Query 048774
Match_columns 519
No_of_seqs 237 out of 2833
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:03:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-62 7.1E-67 518.9 28.9 474 22-509 161-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-47 3.4E-52 428.2 33.2 466 19-518 184-700 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.5E-42 7.6E-47 331.5 5.9 278 24-305 1-284 (287)
4 PRK04841 transcriptional regul 99.6 1.3E-14 2.9E-19 162.1 22.7 296 16-353 11-332 (903)
5 PRK00411 cdc6 cell division co 99.5 2.9E-13 6.2E-18 136.3 19.3 311 8-332 18-358 (394)
6 TIGR02928 orc1/cdc6 family rep 99.5 3.8E-12 8.1E-17 126.9 21.0 311 8-333 3-351 (365)
7 COG2909 MalT ATP-dependent tra 99.4 1.3E-11 2.9E-16 126.6 17.1 298 18-355 18-340 (894)
8 PF01637 Arch_ATPase: Archaeal 99.3 1.7E-12 3.7E-17 120.8 6.0 196 21-225 1-233 (234)
9 TIGR03015 pepcterm_ATPase puta 99.3 3.1E-10 6.6E-15 108.1 19.0 184 42-231 42-243 (269)
10 COG3899 Predicted ATPase [Gene 99.3 3.4E-11 7.4E-16 130.2 12.1 314 21-356 2-389 (849)
11 PF05729 NACHT: NACHT domain 99.2 1.5E-10 3.2E-15 101.5 11.1 144 44-193 1-163 (166)
12 PRK00080 ruvB Holliday junctio 99.2 1.9E-10 4E-15 112.4 11.7 276 19-333 25-311 (328)
13 PTZ00112 origin recognition co 99.1 1.2E-09 2.5E-14 113.4 16.2 303 19-332 755-1086(1164)
14 TIGR00635 ruvB Holliday juncti 99.1 4.9E-10 1.1E-14 108.7 12.5 275 19-332 4-289 (305)
15 KOG0617 Ras suppressor protein 99.1 1.1E-11 2.4E-16 102.9 -0.9 116 393-517 50-190 (264)
16 KOG0617 Ras suppressor protein 99.0 1.4E-11 2.9E-16 102.4 -2.8 99 394-499 97-196 (264)
17 COG2256 MGS1 ATPase related to 98.9 2.3E-08 5E-13 94.9 14.7 261 9-304 19-301 (436)
18 PF13401 AAA_22: AAA domain; P 98.9 3.3E-09 7.1E-14 89.0 7.4 116 42-162 3-125 (131)
19 PLN00113 leucine-rich repeat r 98.9 3.4E-09 7.4E-14 119.5 7.8 118 394-517 183-302 (968)
20 PRK06893 DNA replication initi 98.9 3.1E-08 6.7E-13 91.3 12.4 154 42-227 38-204 (229)
21 PLN00113 leucine-rich repeat r 98.8 3.2E-09 6.9E-14 119.7 6.8 138 374-518 140-279 (968)
22 PF13191 AAA_16: AAA ATPase do 98.8 1.5E-09 3.3E-14 97.0 3.3 50 21-72 2-51 (185)
23 COG3903 Predicted ATPase [Gene 98.8 3E-09 6.5E-14 101.5 4.5 293 42-355 13-316 (414)
24 COG1474 CDC6 Cdc6-related prot 98.8 3.9E-07 8.5E-12 89.2 19.0 294 18-334 16-336 (366)
25 TIGR03420 DnaA_homol_Hda DnaA 98.8 5.1E-08 1.1E-12 90.2 11.0 154 42-227 37-202 (226)
26 PRK13342 recombination factor 98.8 1.1E-07 2.4E-12 95.8 13.5 175 20-226 13-196 (413)
27 KOG0444 Cytoskeletal regulator 98.7 2.1E-09 4.6E-14 106.5 0.9 113 392-510 71-184 (1255)
28 KOG0444 Cytoskeletal regulator 98.7 2E-09 4.2E-14 106.8 0.6 90 425-516 74-166 (1255)
29 PRK07003 DNA polymerase III su 98.7 1.1E-07 2.3E-12 98.7 11.5 198 20-226 17-221 (830)
30 PRK12402 replication factor C 98.7 9.4E-08 2E-12 94.2 10.1 197 19-224 15-224 (337)
31 KOG0472 Leucine-rich repeat pr 98.7 6.9E-09 1.5E-13 97.8 1.4 97 418-517 424-544 (565)
32 PF13173 AAA_14: AAA domain 98.6 9.1E-08 2E-12 79.7 7.1 120 43-185 2-127 (128)
33 cd00009 AAA The AAA+ (ATPases 98.6 5.7E-08 1.2E-12 83.0 5.8 124 22-163 1-130 (151)
34 PRK14961 DNA polymerase III su 98.6 2.5E-07 5.5E-12 91.4 10.7 194 20-222 17-216 (363)
35 PLN03025 replication factor C 98.6 2.7E-07 5.8E-12 89.8 10.4 178 21-222 15-196 (319)
36 PLN03150 hypothetical protein; 98.6 5.9E-08 1.3E-12 102.7 6.2 100 417-516 430-532 (623)
37 PLN03150 hypothetical protein; 98.6 9.5E-08 2.1E-12 101.2 7.7 89 430-518 419-509 (623)
38 PRK14949 DNA polymerase III su 98.6 2.6E-07 5.6E-12 97.8 10.7 189 20-223 17-217 (944)
39 PF14580 LRR_9: Leucine-rich r 98.6 3.9E-08 8.5E-13 85.4 3.6 108 393-510 13-124 (175)
40 PRK08727 hypothetical protein; 98.6 8.3E-07 1.8E-11 82.0 12.5 150 42-223 40-201 (233)
41 TIGR00678 holB DNA polymerase 98.6 2E-06 4.3E-11 76.9 14.2 90 122-221 95-186 (188)
42 PRK14960 DNA polymerase III su 98.6 4.1E-07 8.8E-12 93.5 10.7 187 20-222 16-215 (702)
43 PF05496 RuvB_N: Holliday junc 98.5 3.5E-08 7.5E-13 87.5 2.1 177 19-228 24-223 (233)
44 PRK14963 DNA polymerase III su 98.5 6.2E-08 1.3E-12 98.9 4.1 192 21-223 16-214 (504)
45 PRK09087 hypothetical protein; 98.5 8.7E-07 1.9E-11 81.2 11.1 142 42-226 43-195 (226)
46 PRK12323 DNA polymerase III su 98.5 4.5E-07 9.7E-12 92.9 9.7 190 21-222 18-221 (700)
47 PTZ00202 tuzin; Provisional 98.5 2.3E-07 5E-12 89.9 6.9 165 19-192 262-433 (550)
48 PRK00440 rfc replication facto 98.5 7.5E-07 1.6E-11 87.1 10.8 177 20-222 18-199 (319)
49 PRK08903 DnaA regulatory inact 98.5 1.2E-06 2.6E-11 80.9 11.0 153 42-230 41-203 (227)
50 PRK08084 DNA replication initi 98.5 2.2E-06 4.7E-11 79.4 12.5 152 43-226 45-209 (235)
51 PRK13341 recombination factor 98.5 4.6E-07 1E-11 96.2 8.9 169 19-221 28-212 (725)
52 PRK14956 DNA polymerase III su 98.5 4.4E-07 9.6E-12 90.5 8.2 192 21-221 20-217 (484)
53 PRK14957 DNA polymerase III su 98.5 1.1E-06 2.4E-11 90.1 10.9 179 21-226 18-221 (546)
54 KOG0472 Leucine-rich repeat pr 98.4 1.8E-08 4E-13 95.0 -1.8 82 427-510 226-308 (565)
55 PRK05564 DNA polymerase III su 98.4 1.8E-06 3.8E-11 83.9 11.7 174 22-223 7-187 (313)
56 cd01128 rho_factor Transcripti 98.4 4E-07 8.6E-12 84.2 6.2 91 41-133 14-113 (249)
57 PRK08691 DNA polymerase III su 98.4 8.7E-07 1.9E-11 91.9 9.2 194 20-222 17-216 (709)
58 TIGR02397 dnaX_nterm DNA polym 98.4 2.5E-06 5.4E-11 84.7 12.3 179 20-225 15-217 (355)
59 PRK04195 replication factor C 98.4 7.2E-07 1.6E-11 91.8 8.5 177 21-224 16-200 (482)
60 PRK06645 DNA polymerase III su 98.4 5.6E-06 1.2E-10 84.4 14.6 193 21-222 23-225 (507)
61 PRK14087 dnaA chromosomal repl 98.4 4.4E-06 9.4E-11 84.6 13.8 170 42-230 140-323 (450)
62 PRK14962 DNA polymerase III su 98.4 1.7E-06 3.6E-11 87.8 10.4 181 20-229 15-222 (472)
63 PRK07994 DNA polymerase III su 98.4 1.2E-06 2.5E-11 91.3 9.2 190 20-222 17-216 (647)
64 PRK05642 DNA replication initi 98.4 4.3E-06 9.3E-11 77.3 12.1 152 43-226 45-208 (234)
65 PRK14951 DNA polymerase III su 98.4 2.4E-06 5.2E-11 88.8 11.2 194 20-223 17-222 (618)
66 PRK14964 DNA polymerase III su 98.4 2.6E-06 5.7E-11 86.0 11.1 175 21-221 15-212 (491)
67 PF00308 Bac_DnaA: Bacterial d 98.4 6.2E-06 1.3E-10 75.3 12.3 162 40-226 31-208 (219)
68 PRK07940 DNA polymerase III su 98.3 3.4E-06 7.3E-11 83.5 11.1 92 122-222 116-209 (394)
69 PRK14969 DNA polymerase III su 98.3 2.2E-06 4.9E-11 88.4 10.3 176 21-226 18-221 (527)
70 PLN03210 Resistant to P. syrin 98.3 1.1E-06 2.3E-11 100.2 8.5 96 420-517 625-722 (1153)
71 PF05621 TniB: Bacterial TniB 98.3 3.3E-06 7.1E-11 78.7 10.1 210 10-223 25-258 (302)
72 KOG4194 Membrane glycoprotein 98.3 5.4E-08 1.2E-12 96.1 -1.8 109 395-510 289-427 (873)
73 PF14516 AAA_35: AAA-like doma 98.3 4.6E-05 1E-09 74.3 18.5 200 20-233 12-246 (331)
74 PRK14958 DNA polymerase III su 98.3 3E-06 6.4E-11 86.9 10.3 174 21-222 18-216 (509)
75 PRK07471 DNA polymerase III su 98.3 6.8E-06 1.5E-10 80.7 11.7 194 19-225 19-237 (365)
76 PRK09112 DNA polymerase III su 98.3 3.3E-06 7E-11 82.5 9.1 191 19-223 23-237 (351)
77 PRK05896 DNA polymerase III su 98.3 5.2E-06 1.1E-10 85.3 10.9 196 20-228 17-223 (605)
78 KOG4194 Membrane glycoprotein 98.3 1.5E-07 3.3E-12 93.0 -0.6 135 375-517 246-409 (873)
79 PRK09376 rho transcription ter 98.3 2.5E-06 5.5E-11 82.4 7.6 93 39-133 165-266 (416)
80 PRK06620 hypothetical protein; 98.3 8.3E-06 1.8E-10 74.1 10.7 135 44-223 45-186 (214)
81 KOG2028 ATPase related to the 98.2 4.6E-06 9.9E-11 78.2 8.9 156 42-220 161-330 (554)
82 PF13855 LRR_8: Leucine rich r 98.2 1.4E-06 3E-11 61.9 4.3 56 430-485 2-59 (61)
83 PRK14955 DNA polymerase III su 98.2 3.3E-06 7.2E-11 84.6 8.5 191 20-223 17-225 (397)
84 TIGR03345 VI_ClpV1 type VI sec 98.2 3.8E-06 8.1E-11 91.6 9.5 182 19-221 187-391 (852)
85 PRK14952 DNA polymerase III su 98.2 7E-06 1.5E-10 85.0 11.0 194 21-227 15-221 (584)
86 KOG2543 Origin recognition com 98.2 7.7E-06 1.7E-10 77.4 9.9 167 19-192 6-192 (438)
87 PRK09111 DNA polymerase III su 98.2 7.2E-06 1.6E-10 85.4 10.7 191 21-223 26-230 (598)
88 KOG1259 Nischarin, modulator o 98.2 3.3E-07 7.1E-12 83.5 0.5 112 395-517 303-416 (490)
89 PRK14970 DNA polymerase III su 98.2 1.1E-05 2.3E-10 80.4 11.4 177 19-221 17-204 (367)
90 PRK07764 DNA polymerase III su 98.2 9.3E-06 2E-10 87.5 11.5 188 21-221 17-216 (824)
91 PF13855 LRR_8: Leucine rich r 98.2 9.1E-07 2E-11 62.8 2.5 58 452-510 1-60 (61)
92 PF14580 LRR_9: Leucine-rich r 98.2 1.5E-06 3.1E-11 75.6 4.0 103 397-508 40-149 (175)
93 TIGR00362 DnaA chromosomal rep 98.2 3.8E-05 8.3E-10 77.5 14.2 161 42-225 135-309 (405)
94 PRK14954 DNA polymerase III su 98.2 1E-05 2.3E-10 84.4 10.3 193 19-221 16-223 (620)
95 TIGR02903 spore_lon_C ATP-depe 98.1 2E-05 4.4E-10 83.0 12.5 204 19-229 154-398 (615)
96 PRK14950 DNA polymerase III su 98.1 1.7E-05 3.6E-10 83.4 11.8 193 19-224 16-219 (585)
97 PRK00149 dnaA chromosomal repl 98.1 1.8E-05 3.8E-10 80.9 11.5 161 42-225 147-321 (450)
98 PRK12422 chromosomal replicati 98.1 6.5E-05 1.4E-09 75.9 15.4 154 43-219 141-306 (445)
99 PRK08451 DNA polymerase III su 98.1 2.3E-05 5E-10 80.0 12.0 175 21-223 16-215 (535)
100 KOG0618 Serine/threonine phosp 98.1 2.6E-07 5.6E-12 96.2 -2.1 109 392-510 376-487 (1081)
101 PRK06305 DNA polymerase III su 98.1 1.7E-05 3.7E-10 80.4 10.9 182 19-226 17-223 (451)
102 TIGR02639 ClpA ATP-dependent C 98.1 9E-06 2E-10 87.9 9.4 153 19-193 182-358 (731)
103 KOG2227 Pre-initiation complex 98.1 1.9E-05 4.2E-10 76.7 10.4 220 6-228 137-374 (529)
104 PRK14088 dnaA chromosomal repl 98.1 5.3E-05 1.2E-09 76.7 14.2 159 43-225 130-304 (440)
105 PRK14953 DNA polymerase III su 98.1 3.4E-05 7.3E-10 78.8 12.6 172 21-223 18-217 (486)
106 PRK05707 DNA polymerase III su 98.1 8.9E-05 1.9E-09 71.8 14.9 93 123-223 106-200 (328)
107 PRK14959 DNA polymerase III su 98.1 6E-05 1.3E-09 78.1 14.2 195 22-230 19-225 (624)
108 CHL00181 cbbX CbbX; Provisiona 98.1 9.3E-05 2E-09 70.4 14.4 137 43-196 59-212 (287)
109 TIGR01242 26Sp45 26S proteasom 98.1 3.1E-05 6.8E-10 76.9 11.4 174 20-220 123-328 (364)
110 KOG0532 Leucine-rich repeat (L 98.1 5.1E-07 1.1E-11 89.2 -1.3 95 419-516 156-250 (722)
111 TIGR00767 rho transcription te 98.1 7.8E-06 1.7E-10 79.5 6.7 93 41-134 166-266 (415)
112 KOG0989 Replication factor C, 98.0 6.6E-06 1.4E-10 75.6 5.6 181 20-219 37-223 (346)
113 PRK14971 DNA polymerase III su 98.0 2.3E-05 5E-10 82.3 10.4 173 20-221 18-217 (614)
114 COG0593 DnaA ATPase involved i 98.0 3.1E-05 6.7E-10 75.8 10.5 144 38-201 108-265 (408)
115 PRK15370 E3 ubiquitin-protein 98.0 8.5E-06 1.9E-10 87.2 7.0 124 373-517 198-321 (754)
116 PRK07133 DNA polymerase III su 98.0 4E-05 8.7E-10 80.6 11.7 187 21-226 20-220 (725)
117 TIGR02880 cbbX_cfxQ probable R 98.0 9.6E-05 2.1E-09 70.4 13.4 136 43-195 58-210 (284)
118 PF00004 AAA: ATPase family as 98.0 9.5E-06 2.1E-10 67.8 5.9 20 46-65 1-20 (132)
119 KOG0532 Leucine-rich repeat (L 98.0 4.5E-07 9.7E-12 89.6 -2.6 116 393-519 115-230 (722)
120 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.1E-10 54.0 3.2 39 430-468 2-40 (44)
121 TIGR02881 spore_V_K stage V sp 98.0 6.2E-05 1.3E-09 71.0 11.9 135 42-195 41-193 (261)
122 COG3267 ExeA Type II secretory 98.0 0.00021 4.6E-09 64.4 14.3 184 42-229 50-248 (269)
123 KOG0618 Serine/threonine phosp 98.0 1.5E-06 3.1E-11 90.8 0.6 88 428-517 44-131 (1081)
124 PRK14948 DNA polymerase III su 98.0 5.3E-05 1.2E-09 79.6 11.9 192 20-223 17-219 (620)
125 PRK15370 E3 ubiquitin-protein 98.0 1.2E-05 2.5E-10 86.2 7.0 103 399-518 241-343 (754)
126 smart00382 AAA ATPases associa 98.0 3.6E-05 7.7E-10 65.0 8.8 89 43-136 2-91 (148)
127 PHA02544 44 clamp loader, smal 98.0 3.2E-05 7E-10 75.4 9.5 147 20-191 22-171 (316)
128 PRK05563 DNA polymerase III su 98.0 5.3E-05 1.2E-09 78.9 11.5 187 20-221 17-215 (559)
129 PRK06647 DNA polymerase III su 98.0 7.7E-05 1.7E-09 77.5 12.4 189 21-222 18-216 (563)
130 CHL00095 clpC Clp protease ATP 98.0 2.4E-05 5.3E-10 85.7 9.2 153 19-191 179-352 (821)
131 PRK14086 dnaA chromosomal repl 97.9 8.8E-05 1.9E-09 76.5 11.8 157 43-224 314-486 (617)
132 TIGR03346 chaperone_ClpB ATP-d 97.9 4.8E-05 1E-09 83.7 10.5 154 19-193 173-349 (852)
133 PRK03992 proteasome-activating 97.9 0.00012 2.7E-09 73.0 12.2 175 19-220 131-337 (389)
134 PRK15387 E3 ubiquitin-protein 97.9 9E-06 1.9E-10 86.7 4.2 81 429-516 382-462 (788)
135 COG2255 RuvB Holliday junction 97.9 0.00019 4.2E-09 65.5 11.8 63 156-222 155-219 (332)
136 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 52.7 2.6 33 453-485 2-34 (44)
137 PRK14965 DNA polymerase III su 97.9 6.2E-05 1.3E-09 78.9 9.9 193 20-226 17-221 (576)
138 KOG4658 Apoptotic ATPase [Sign 97.9 7.7E-06 1.7E-10 89.0 3.3 116 393-517 517-636 (889)
139 PRK10865 protein disaggregatio 97.8 8E-05 1.7E-09 81.6 10.6 44 19-65 178-221 (857)
140 KOG4579 Leucine-rich repeat (L 97.8 3.5E-06 7.6E-11 68.0 -0.0 93 422-516 46-139 (177)
141 PRK08116 hypothetical protein; 97.8 6.3E-05 1.4E-09 70.9 8.4 103 44-162 115-220 (268)
142 KOG1259 Nischarin, modulator o 97.8 5.8E-06 1.3E-10 75.5 1.1 86 422-510 300-385 (490)
143 PRK10536 hypothetical protein; 97.8 2.9E-05 6.4E-10 71.0 5.5 140 14-163 50-213 (262)
144 PRK11034 clpA ATP-dependent Cl 97.8 7.8E-05 1.7E-09 79.9 9.4 154 19-192 186-361 (758)
145 PRK07399 DNA polymerase III su 97.8 0.00016 3.4E-09 69.7 9.8 193 21-224 6-219 (314)
146 cd00116 LRR_RI Leucine-rich re 97.7 9.8E-05 2.1E-09 72.0 7.9 113 396-510 133-261 (319)
147 PRK08769 DNA polymerase III su 97.7 0.00094 2E-08 64.2 13.7 93 122-224 112-206 (319)
148 PRK15387 E3 ubiquitin-protein 97.7 9E-05 1.9E-09 79.2 7.2 58 429-493 302-359 (788)
149 KOG4579 Leucine-rich repeat (L 97.6 7.6E-06 1.6E-10 66.1 -0.9 86 430-517 28-117 (177)
150 TIGR03689 pup_AAA proteasome A 97.6 0.00058 1.3E-08 69.6 12.1 140 42-194 215-379 (512)
151 PF04665 Pox_A32: Poxvirus A32 97.6 0.00017 3.6E-09 65.8 7.4 35 45-81 15-49 (241)
152 COG4886 Leucine-rich repeat (L 97.6 3.9E-05 8.4E-10 77.4 3.5 79 430-509 141-219 (394)
153 COG1373 Predicted ATPase (AAA+ 97.6 0.00038 8.2E-09 69.6 10.4 119 45-189 39-163 (398)
154 PRK11331 5-methylcytosine-spec 97.6 5.9E-05 1.3E-09 74.7 4.3 106 22-136 178-285 (459)
155 PRK07993 DNA polymerase III su 97.6 0.002 4.3E-08 62.7 14.5 91 122-221 107-199 (334)
156 KOG0741 AAA+-type ATPase [Post 97.6 0.00054 1.2E-08 67.8 10.4 144 46-216 541-704 (744)
157 PTZ00361 26 proteosome regulat 97.6 0.00032 6.8E-09 70.4 9.1 133 42-195 216-369 (438)
158 KOG0991 Replication factor C, 97.5 0.00013 2.9E-09 64.4 5.4 42 21-65 29-70 (333)
159 COG1222 RPT1 ATP-dependent 26S 97.5 0.0015 3.2E-08 61.9 12.4 153 41-220 183-357 (406)
160 PTZ00454 26S protease regulato 97.5 0.0011 2.3E-08 66.1 12.3 153 42-220 178-351 (398)
161 cd00116 LRR_RI Leucine-rich re 97.5 0.00011 2.4E-09 71.6 5.2 136 374-513 81-234 (319)
162 PRK06871 DNA polymerase III su 97.5 0.0023 5E-08 61.6 14.0 91 122-221 106-198 (325)
163 PRK08181 transposase; Validate 97.5 0.00026 5.6E-09 66.4 7.1 102 43-163 106-209 (269)
164 PRK08058 DNA polymerase III su 97.5 0.0012 2.7E-08 64.3 12.2 71 122-192 109-181 (329)
165 KOG4237 Extracellular matrix p 97.5 8.6E-06 1.9E-10 77.2 -2.8 98 419-517 80-181 (498)
166 PRK06526 transposase; Provisio 97.5 0.00023 5E-09 66.3 6.6 23 43-65 98-120 (254)
167 PRK12608 transcription termina 97.5 0.00074 1.6E-08 65.5 9.8 90 41-132 131-229 (380)
168 PRK06090 DNA polymerase III su 97.4 0.0027 5.8E-08 61.0 13.2 92 122-225 107-200 (319)
169 TIGR01241 FtsH_fam ATP-depende 97.4 0.0021 4.5E-08 66.7 13.2 153 42-220 87-260 (495)
170 PRK09183 transposase/IS protei 97.4 0.00057 1.2E-08 64.1 8.2 23 43-65 102-124 (259)
171 KOG3207 Beta-tubulin folding c 97.4 5E-05 1.1E-09 73.2 1.1 82 428-510 245-337 (505)
172 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00092 2E-08 68.2 10.1 155 42-220 258-429 (489)
173 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0019 4E-08 65.3 11.7 71 42-133 222-292 (802)
174 PF05673 DUF815: Protein of un 97.4 0.0034 7.4E-08 57.0 12.4 118 19-165 27-153 (249)
175 PRK12377 putative replication 97.4 0.00054 1.2E-08 63.4 7.5 38 43-82 101-138 (248)
176 PRK09361 radB DNA repair and r 97.4 0.00055 1.2E-08 63.1 7.6 44 42-88 22-65 (225)
177 CHL00176 ftsH cell division pr 97.4 0.0022 4.7E-08 67.7 12.9 152 43-220 216-388 (638)
178 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0023 4.9E-08 60.4 11.8 43 43-90 21-63 (262)
179 PF01695 IstB_IS21: IstB-like 97.4 0.00025 5.4E-09 62.4 4.9 37 43-81 47-83 (178)
180 PRK04296 thymidine kinase; Pro 97.4 0.00028 6E-09 63.0 5.2 113 44-163 3-116 (190)
181 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00057 1.2E-08 63.5 7.4 48 42-89 18-69 (235)
182 PF00448 SRP54: SRP54-type pro 97.3 0.00078 1.7E-08 60.2 7.9 89 43-133 1-93 (196)
183 KOG1514 Origin recognition com 97.3 0.00098 2.1E-08 68.4 9.4 212 17-229 394-624 (767)
184 PF02562 PhoH: PhoH-like prote 97.3 0.00029 6.3E-09 62.8 5.0 116 43-163 19-156 (205)
185 TIGR02237 recomb_radB DNA repa 97.3 0.00067 1.4E-08 61.7 7.6 46 42-90 11-56 (209)
186 PRK06964 DNA polymerase III su 97.3 0.0011 2.3E-08 64.5 9.2 89 122-222 131-221 (342)
187 PRK06921 hypothetical protein; 97.3 0.00096 2.1E-08 62.8 8.2 38 42-81 116-154 (266)
188 PF13177 DNA_pol3_delta2: DNA 97.3 0.0015 3.3E-08 56.6 8.9 118 43-180 19-161 (162)
189 PF08423 Rad51: Rad51; InterP 97.3 0.00055 1.2E-08 64.0 6.5 55 43-98 37-96 (256)
190 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00016 3.5E-09 79.1 3.2 143 11-162 558-718 (852)
191 COG4886 Leucine-rich repeat (L 97.3 0.00011 2.4E-09 74.1 1.8 103 400-510 141-243 (394)
192 KOG3665 ZYG-1-like serine/thre 97.3 0.00022 4.7E-09 75.8 4.1 107 397-510 146-261 (699)
193 PRK07952 DNA replication prote 97.3 0.00088 1.9E-08 61.9 7.5 81 44-141 100-180 (244)
194 PLN00020 ribulose bisphosphate 97.3 0.0035 7.5E-08 60.4 11.4 24 42-65 147-170 (413)
195 PRK04132 replication factor C 97.3 0.0042 9.2E-08 67.1 13.5 154 48-222 569-727 (846)
196 PRK08118 topology modulation p 97.2 0.00054 1.2E-08 59.7 5.6 34 45-78 3-37 (167)
197 PF10443 RNA12: RNA12 protein; 97.2 0.0064 1.4E-07 59.7 13.3 186 41-236 15-288 (431)
198 PRK08939 primosomal protein Dn 97.2 0.001 2.2E-08 63.9 7.7 101 43-162 156-260 (306)
199 PF07693 KAP_NTPase: KAP famil 97.2 0.0023 5.1E-08 62.6 10.3 25 41-65 18-42 (325)
200 TIGR02639 ClpA ATP-dependent C 97.2 0.001 2.2E-08 72.2 8.2 124 12-147 447-577 (731)
201 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0004 8.7E-09 76.5 5.2 127 12-147 558-691 (852)
202 PRK05541 adenylylsulfate kinas 97.1 0.0008 1.7E-08 59.4 5.8 37 42-80 6-42 (176)
203 PF07728 AAA_5: AAA domain (dy 97.1 0.00026 5.7E-09 59.7 2.6 41 46-91 2-42 (139)
204 PRK08699 DNA polymerase III su 97.1 0.0046 1E-07 59.9 11.3 70 123-192 113-184 (325)
205 cd01393 recA_like RecA is a b 97.1 0.0026 5.6E-08 58.6 9.3 88 42-132 18-123 (226)
206 TIGR00602 rad24 checkpoint pro 97.1 0.00064 1.4E-08 71.2 5.7 45 21-65 86-132 (637)
207 COG2884 FtsE Predicted ATPase 97.1 0.0049 1.1E-07 53.2 9.8 62 107-170 139-204 (223)
208 cd00983 recA RecA is a bacter 97.1 0.00096 2.1E-08 64.0 6.3 83 43-132 55-142 (325)
209 KOG0744 AAA+-type ATPase [Post 97.1 0.0014 2.9E-08 61.1 6.6 81 42-133 176-260 (423)
210 cd01394 radB RadB. The archaea 97.1 0.0016 3.5E-08 59.6 7.3 42 42-85 18-59 (218)
211 PRK06835 DNA replication prote 97.1 0.00074 1.6E-08 65.4 5.1 36 44-81 184-219 (329)
212 PRK10865 protein disaggregatio 97.1 0.00057 1.2E-08 75.1 4.7 127 12-147 561-694 (857)
213 KOG4237 Extracellular matrix p 97.1 0.00019 4.1E-09 68.4 0.9 86 425-510 270-357 (498)
214 PF13207 AAA_17: AAA domain; P 97.0 0.00039 8.5E-09 57.0 2.6 21 45-65 1-21 (121)
215 TIGR02012 tigrfam_recA protein 97.0 0.0012 2.5E-08 63.3 6.0 85 42-133 54-143 (321)
216 cd01120 RecA-like_NTPases RecA 97.0 0.0034 7.3E-08 54.3 8.5 38 46-85 2-39 (165)
217 KOG1969 DNA replication checkp 97.0 0.0017 3.6E-08 67.0 7.1 78 40-136 323-400 (877)
218 PRK07261 topology modulation p 97.0 0.0023 5.1E-08 56.0 7.3 21 45-65 2-22 (171)
219 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0028 6.1E-08 54.1 7.5 117 44-163 3-138 (159)
220 KOG0730 AAA+-type ATPase [Post 97.0 0.0084 1.8E-07 61.4 11.9 154 41-220 466-637 (693)
221 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0039 8.5E-08 58.2 8.8 90 41-132 67-172 (274)
222 PRK15386 type III secretion pr 97.0 0.00088 1.9E-08 65.8 4.6 37 431-469 74-112 (426)
223 KOG1859 Leucine-rich repeat pr 97.0 0.00013 2.8E-09 74.7 -1.2 85 424-510 204-290 (1096)
224 PRK09354 recA recombinase A; P 97.0 0.0015 3.3E-08 63.1 6.2 84 43-133 60-148 (349)
225 PRK11889 flhF flagellar biosyn 97.0 0.0065 1.4E-07 59.4 10.3 89 42-133 240-330 (436)
226 KOG3665 ZYG-1-like serine/thre 97.0 0.00048 1E-08 73.3 2.9 105 399-510 122-231 (699)
227 PRK06696 uridine kinase; Valid 96.9 0.00024 5.1E-09 65.3 0.2 42 24-65 3-44 (223)
228 CHL00095 clpC Clp protease ATP 96.9 0.001 2.2E-08 73.1 5.1 142 12-162 502-661 (821)
229 COG4608 AppF ABC-type oligopep 96.9 0.0056 1.2E-07 56.3 8.9 126 42-171 38-178 (268)
230 COG0542 clpA ATP-binding subun 96.9 0.00073 1.6E-08 71.4 3.6 128 12-148 484-618 (786)
231 COG2812 DnaX DNA polymerase II 96.9 0.0036 7.9E-08 63.5 8.3 96 121-220 117-214 (515)
232 cd01131 PilT Pilus retraction 96.9 0.0015 3.2E-08 58.8 5.0 110 44-165 2-111 (198)
233 KOG2228 Origin recognition com 96.9 0.0096 2.1E-07 56.1 10.2 150 41-193 47-219 (408)
234 KOG0531 Protein phosphatase 1, 96.9 0.00042 9.2E-09 70.2 1.5 109 395-515 91-201 (414)
235 COG0470 HolB ATPase involved i 96.8 0.0039 8.4E-08 61.0 8.2 58 122-179 108-167 (325)
236 PRK05480 uridine/cytidine kina 96.8 0.012 2.6E-07 53.5 10.8 24 42-65 5-28 (209)
237 COG1124 DppF ABC-type dipeptid 96.8 0.01 2.2E-07 53.5 9.8 61 109-170 145-209 (252)
238 TIGR01243 CDC48 AAA family ATP 96.8 0.012 2.7E-07 64.1 12.6 152 43-220 487-657 (733)
239 PRK15386 type III secretion pr 96.8 0.0013 2.7E-08 64.7 4.3 93 400-509 73-187 (426)
240 TIGR01243 CDC48 AAA family ATP 96.8 0.0075 1.6E-07 65.7 10.7 175 21-221 180-382 (733)
241 COG0468 RecA RecA/RadA recombi 96.8 0.005 1.1E-07 57.7 8.0 88 43-132 59-150 (279)
242 KOG0733 Nuclear AAA ATPase (VC 96.8 0.016 3.6E-07 58.7 11.9 155 42-220 544-718 (802)
243 KOG2035 Replication factor C, 96.8 0.014 3E-07 53.5 10.4 139 126-268 130-282 (351)
244 KOG0531 Protein phosphatase 1, 96.8 0.00051 1.1E-08 69.6 1.5 60 425-485 136-196 (414)
245 PRK00771 signal recognition pa 96.8 0.0064 1.4E-07 61.1 9.2 88 42-132 94-184 (437)
246 TIGR02902 spore_lonB ATP-depen 96.8 0.0018 3.9E-08 67.4 5.4 43 20-65 66-108 (531)
247 PRK08233 hypothetical protein; 96.8 0.0037 8.1E-08 55.4 6.7 22 44-65 4-25 (182)
248 cd03247 ABCC_cytochrome_bd The 96.8 0.0045 9.8E-08 54.6 7.1 120 42-167 27-161 (178)
249 KOG0735 AAA+-type ATPase [Post 96.7 0.003 6.6E-08 64.9 6.5 73 42-133 430-504 (952)
250 PRK06067 flagellar accessory p 96.7 0.0069 1.5E-07 56.1 8.5 87 42-133 24-130 (234)
251 COG0466 Lon ATP-dependent Lon 96.7 0.01 2.2E-07 61.5 10.1 140 42-194 349-509 (782)
252 PF13604 AAA_30: AAA domain; P 96.7 0.0034 7.4E-08 56.3 6.1 109 42-163 17-131 (196)
253 PRK11034 clpA ATP-dependent Cl 96.7 0.001 2.3E-08 71.5 3.2 123 11-145 450-579 (758)
254 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0051 1.1E-07 52.2 6.7 106 42-167 25-131 (144)
255 PRK14722 flhF flagellar biosyn 96.7 0.0065 1.4E-07 59.6 8.1 87 42-133 136-225 (374)
256 COG0542 clpA ATP-binding subun 96.7 0.0015 3.3E-08 69.1 4.0 152 19-191 170-344 (786)
257 COG0572 Udk Uridine kinase [Nu 96.7 0.003 6.5E-08 56.4 5.2 76 44-124 9-85 (218)
258 KOG1859 Leucine-rich repeat pr 96.7 0.00017 3.6E-09 73.9 -2.9 81 427-510 185-265 (1096)
259 PTZ00301 uridine kinase; Provi 96.7 0.0026 5.6E-08 57.5 4.9 22 44-65 4-25 (210)
260 TIGR03499 FlhF flagellar biosy 96.6 0.01 2.2E-07 56.6 9.0 88 42-132 193-281 (282)
261 PF14532 Sigma54_activ_2: Sigm 96.6 0.0012 2.5E-08 55.7 2.3 89 42-163 20-110 (138)
262 PLN03187 meiotic recombination 96.6 0.0037 8.1E-08 60.7 5.9 89 43-132 126-230 (344)
263 PF00485 PRK: Phosphoribulokin 96.6 0.0078 1.7E-07 53.9 7.7 80 45-127 1-87 (194)
264 cd03214 ABC_Iron-Siderophores_ 96.6 0.015 3.2E-07 51.5 9.3 122 42-166 24-161 (180)
265 PRK13531 regulatory ATPase Rav 96.6 0.00058 1.3E-08 68.5 0.2 51 10-65 11-61 (498)
266 cd03115 SRP The signal recogni 96.6 0.0096 2.1E-07 52.3 8.0 87 45-133 2-92 (173)
267 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.0083 1.8E-07 55.7 7.8 48 42-93 20-67 (237)
268 TIGR00708 cobA cob(I)alamin ad 96.6 0.016 3.4E-07 50.2 8.8 119 43-163 5-140 (173)
269 TIGR00763 lon ATP-dependent pr 96.6 0.021 4.6E-07 62.5 12.1 53 13-65 314-369 (775)
270 PRK14974 cell division protein 96.6 0.013 2.7E-07 56.9 9.1 91 42-134 139-233 (336)
271 PF00158 Sigma54_activat: Sigm 96.6 0.0048 1E-07 53.6 5.7 23 43-65 22-44 (168)
272 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.011 2.3E-07 55.7 8.4 42 42-85 35-76 (259)
273 PRK11608 pspF phage shock prot 96.5 0.0014 2.9E-08 63.9 2.4 64 18-84 5-68 (326)
274 PF01583 APS_kinase: Adenylyls 96.5 0.0024 5.1E-08 54.3 3.6 36 44-81 3-38 (156)
275 COG0563 Adk Adenylate kinase a 96.5 0.0033 7.1E-08 55.2 4.6 20 46-65 3-22 (178)
276 cd03228 ABCC_MRP_Like The MRP 96.5 0.011 2.4E-07 51.8 7.8 120 42-168 27-160 (171)
277 cd03223 ABCD_peroxisomal_ALDP 96.5 0.023 4.9E-07 49.5 9.7 117 42-167 26-152 (166)
278 KOG0924 mRNA splicing factor A 96.5 0.0027 5.8E-08 64.7 4.2 135 19-166 356-513 (1042)
279 cd03216 ABC_Carb_Monos_I This 96.5 0.0075 1.6E-07 52.4 6.6 117 42-166 25-145 (163)
280 KOG2004 Mitochondrial ATP-depe 96.5 0.011 2.4E-07 61.0 8.5 140 41-194 436-597 (906)
281 cd00544 CobU Adenosylcobinamid 96.5 0.0083 1.8E-07 52.2 6.7 79 46-132 2-82 (169)
282 TIGR02238 recomb_DMC1 meiotic 96.5 0.0052 1.1E-07 59.2 5.9 89 43-132 96-200 (313)
283 COG1484 DnaC DNA replication p 96.5 0.0086 1.9E-07 55.9 7.2 75 42-134 104-178 (254)
284 cd01122 GP4d_helicase GP4d_hel 96.5 0.028 6.1E-07 53.3 11.0 53 42-97 29-81 (271)
285 smart00763 AAA_PrkA PrkA AAA d 96.5 0.00042 9.2E-09 66.9 -1.6 47 20-66 52-101 (361)
286 cd03238 ABC_UvrA The excision 96.5 0.016 3.4E-07 50.8 8.4 116 42-167 20-153 (176)
287 PRK10867 signal recognition pa 96.4 0.011 2.4E-07 59.3 8.2 89 42-132 99-192 (433)
288 PF08433 KTI12: Chromatin asso 96.4 0.0031 6.8E-08 59.2 4.1 22 44-65 2-23 (270)
289 TIGR02239 recomb_RAD51 DNA rep 96.4 0.0066 1.4E-07 58.6 6.4 48 42-89 95-146 (316)
290 COG1223 Predicted ATPase (AAA+ 96.4 0.087 1.9E-06 47.9 12.7 154 40-220 148-319 (368)
291 TIGR02236 recomb_radA DNA repa 96.4 0.0095 2.1E-07 57.8 7.5 51 42-92 94-148 (310)
292 COG4088 Predicted nucleotide k 96.4 0.0061 1.3E-07 53.2 5.3 22 44-65 2-23 (261)
293 KOG0739 AAA+-type ATPase [Post 96.4 0.044 9.4E-07 50.8 11.0 68 44-133 167-235 (439)
294 KOG3207 Beta-tubulin folding c 96.4 0.0044 9.6E-08 60.2 4.9 113 397-517 195-318 (505)
295 TIGR00064 ftsY signal recognit 96.4 0.017 3.8E-07 54.5 8.9 90 42-133 71-164 (272)
296 TIGR00959 ffh signal recogniti 96.4 0.01 2.3E-07 59.5 7.8 90 42-133 98-192 (428)
297 PRK12724 flagellar biosynthesi 96.4 0.011 2.3E-07 58.6 7.6 23 43-65 223-245 (432)
298 cd03246 ABCC_Protease_Secretio 96.4 0.014 3E-07 51.3 7.7 119 42-167 27-160 (173)
299 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0054 1.2E-07 60.2 5.5 105 42-161 61-166 (362)
300 PRK04301 radA DNA repair and r 96.4 0.011 2.3E-07 57.6 7.6 50 43-92 102-155 (317)
301 PF13671 AAA_33: AAA domain; P 96.4 0.0027 5.9E-08 53.7 3.0 21 45-65 1-21 (143)
302 PRK07132 DNA polymerase III su 96.4 0.07 1.5E-06 51.0 12.8 155 43-226 18-185 (299)
303 COG1136 SalX ABC-type antimicr 96.3 0.039 8.4E-07 49.9 10.3 63 107-169 144-209 (226)
304 KOG1051 Chaperone HSP104 and r 96.3 0.0024 5.3E-08 68.5 3.1 121 9-141 552-678 (898)
305 PRK06002 fliI flagellum-specif 96.3 0.021 4.6E-07 57.1 9.5 88 42-132 164-263 (450)
306 PF00154 RecA: recA bacterial 96.3 0.011 2.3E-07 56.7 7.1 84 42-132 52-140 (322)
307 PRK12726 flagellar biosynthesi 96.3 0.019 4.1E-07 56.0 8.7 89 42-133 205-295 (407)
308 PF13238 AAA_18: AAA domain; P 96.3 0.0029 6.2E-08 52.4 2.9 20 46-65 1-20 (129)
309 cd02025 PanK Pantothenate kina 96.3 0.018 3.9E-07 52.6 8.3 74 45-121 1-76 (220)
310 PRK05986 cob(I)alamin adenolsy 96.3 0.013 2.9E-07 51.3 6.8 119 43-163 22-158 (191)
311 cd03222 ABC_RNaseL_inhibitor T 96.3 0.024 5.2E-07 49.7 8.5 110 42-168 24-137 (177)
312 cd00984 DnaB_C DnaB helicase C 96.3 0.027 5.9E-07 52.4 9.5 52 42-96 12-63 (242)
313 PF07724 AAA_2: AAA domain (Cd 96.3 0.0015 3.2E-08 57.0 0.9 40 45-86 5-45 (171)
314 PRK05973 replicative DNA helic 96.3 0.024 5.1E-07 52.0 8.7 48 42-93 63-110 (237)
315 PRK12723 flagellar biosynthesi 96.3 0.033 7.1E-07 55.2 10.3 90 42-134 173-265 (388)
316 cd02019 NK Nucleoside/nucleoti 96.3 0.003 6.6E-08 45.8 2.3 21 45-65 1-21 (69)
317 PRK05703 flhF flagellar biosyn 96.2 0.032 6.9E-07 56.3 10.3 85 43-132 221-308 (424)
318 TIGR01817 nifA Nif-specific re 96.2 0.0053 1.1E-07 64.4 4.9 63 19-84 196-258 (534)
319 PRK10733 hflB ATP-dependent me 96.2 0.051 1.1E-06 58.1 12.2 132 43-195 185-337 (644)
320 COG1618 Predicted nucleotide k 96.2 0.0045 9.8E-08 51.9 3.3 21 45-65 7-27 (179)
321 PF10236 DAP3: Mitochondrial r 96.2 0.008 1.7E-07 58.0 5.6 49 174-223 258-306 (309)
322 KOG0743 AAA+-type ATPase [Post 96.2 0.097 2.1E-06 51.7 12.8 40 20-66 219-258 (457)
323 TIGR02974 phageshock_pspF psp 96.2 0.0033 7.1E-08 61.3 2.9 24 42-65 21-44 (329)
324 TIGR01425 SRP54_euk signal rec 96.2 0.017 3.7E-07 57.6 7.9 39 42-82 99-137 (429)
325 KOG3928 Mitochondrial ribosome 96.2 0.018 4E-07 55.7 7.7 57 173-230 404-460 (461)
326 PTZ00494 tuzin-like protein; P 96.2 0.034 7.4E-07 54.7 9.5 165 19-192 371-543 (664)
327 COG0464 SpoVK ATPases of the A 96.2 0.021 4.5E-07 59.4 9.0 133 42-195 275-425 (494)
328 TIGR03575 selen_PSTK_euk L-ser 96.2 0.017 3.8E-07 55.9 7.6 21 45-65 1-21 (340)
329 KOG0736 Peroxisome assembly fa 96.2 0.0088 1.9E-07 62.2 5.8 71 43-134 705-775 (953)
330 PRK10787 DNA-binding ATP-depen 96.1 0.02 4.4E-07 62.2 8.9 139 42-193 348-506 (784)
331 PF00625 Guanylate_kin: Guanyl 96.1 0.0045 9.7E-08 55.0 3.3 36 43-80 2-37 (183)
332 cd03230 ABC_DR_subfamily_A Thi 96.1 0.012 2.6E-07 51.7 6.0 120 42-167 25-159 (173)
333 PRK06762 hypothetical protein; 96.1 0.0034 7.4E-08 54.7 2.4 22 44-65 3-24 (166)
334 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.024 5.1E-07 52.2 7.9 125 42-168 29-204 (254)
335 PRK04328 hypothetical protein; 96.1 0.016 3.5E-07 54.2 7.0 41 42-84 22-62 (249)
336 PLN03186 DNA repair protein RA 96.1 0.0093 2E-07 58.0 5.5 57 42-99 122-182 (342)
337 cd01121 Sms Sms (bacterial rad 96.1 0.016 3.4E-07 57.3 7.1 83 43-133 82-168 (372)
338 cd03229 ABC_Class3 This class 96.1 0.014 3E-07 51.5 6.1 24 42-65 25-48 (178)
339 PRK12727 flagellar biosynthesi 96.1 0.023 5E-07 57.8 8.2 87 42-133 349-438 (559)
340 PF13481 AAA_25: AAA domain; P 96.1 0.0036 7.8E-08 56.1 2.4 42 43-84 32-81 (193)
341 TIGR03574 selen_PSTK L-seryl-t 96.0 0.017 3.7E-07 54.1 6.9 21 45-65 1-21 (249)
342 PF13245 AAA_19: Part of AAA d 96.0 0.0061 1.3E-07 45.1 3.0 24 42-65 9-32 (76)
343 PRK15429 formate hydrogenlyase 96.0 0.0038 8.3E-08 67.5 2.7 134 20-163 377-521 (686)
344 COG1066 Sms Predicted ATP-depe 96.0 0.033 7.1E-07 54.2 8.5 83 43-134 93-179 (456)
345 PRK08972 fliI flagellum-specif 96.0 0.027 5.9E-07 56.2 8.3 87 42-132 161-261 (444)
346 PRK05022 anaerobic nitric oxid 96.0 0.0048 1E-07 64.1 3.3 64 18-84 186-249 (509)
347 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8.1E-08 56.7 2.1 88 422-509 58-153 (260)
348 COG2607 Predicted ATPase (AAA+ 96.0 0.028 6.1E-07 50.5 7.4 30 42-73 84-113 (287)
349 PF00910 RNA_helicase: RNA hel 96.0 0.0034 7.3E-08 50.2 1.6 20 46-65 1-20 (107)
350 cd02028 UMPK_like Uridine mono 96.0 0.013 2.8E-07 51.7 5.5 21 45-65 1-21 (179)
351 cd00227 CPT Chloramphenicol (C 96.0 0.0056 1.2E-07 53.8 3.2 23 43-65 2-24 (175)
352 PTZ00035 Rad51 protein; Provis 96.0 0.022 4.7E-07 55.6 7.5 48 42-89 117-168 (337)
353 cd02027 APSK Adenosine 5'-phos 96.0 0.027 5.9E-07 48.0 7.3 21 45-65 1-21 (149)
354 cd02024 NRK1 Nicotinamide ribo 96.0 0.011 2.4E-07 52.2 4.9 21 45-65 1-21 (187)
355 KOG0727 26S proteasome regulat 96.0 0.016 3.4E-07 52.2 5.8 25 41-65 187-211 (408)
356 PTZ00088 adenylate kinase 1; P 96.0 0.0061 1.3E-07 55.9 3.4 20 46-65 9-28 (229)
357 KOG0729 26S proteasome regulat 95.9 0.018 3.9E-07 52.3 6.1 25 41-65 209-233 (435)
358 KOG1644 U2-associated snRNP A' 95.9 0.01 2.3E-07 51.7 4.4 57 428-484 87-149 (233)
359 PRK06547 hypothetical protein; 95.9 0.0054 1.2E-07 53.6 2.7 24 42-65 14-37 (172)
360 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.0077 1.7E-07 54.8 3.8 23 43-65 29-51 (213)
361 TIGR00390 hslU ATP-dependent p 95.9 0.0035 7.6E-08 61.7 1.7 51 15-65 8-69 (441)
362 COG1875 NYN ribonuclease and A 95.9 0.029 6.2E-07 53.6 7.5 120 40-163 242-388 (436)
363 PRK12678 transcription termina 95.9 0.021 4.6E-07 58.2 7.0 92 39-132 412-512 (672)
364 PF13479 AAA_24: AAA domain 95.9 0.027 5.8E-07 51.3 7.1 31 44-84 4-34 (213)
365 KOG0731 AAA+-type ATPase conta 95.9 0.1 2.3E-06 55.3 12.1 156 42-222 343-520 (774)
366 COG1120 FepC ABC-type cobalami 95.9 0.051 1.1E-06 50.2 8.9 63 107-170 140-206 (258)
367 KOG1644 U2-associated snRNP A' 95.9 0.018 3.8E-07 50.4 5.4 82 425-507 60-148 (233)
368 PRK15453 phosphoribulokinase; 95.8 0.05 1.1E-06 50.8 8.7 78 42-121 4-88 (290)
369 PF00006 ATP-synt_ab: ATP synt 95.8 0.026 5.5E-07 51.1 6.7 87 42-132 14-114 (215)
370 PRK09519 recA DNA recombinatio 95.8 0.026 5.5E-07 60.5 7.7 84 43-133 60-148 (790)
371 PF07726 AAA_3: ATPase family 95.8 0.004 8.6E-08 50.5 1.3 27 46-74 2-28 (131)
372 PRK07667 uridine kinase; Provi 95.8 0.011 2.4E-07 52.9 4.3 24 42-65 16-39 (193)
373 PRK03839 putative kinase; Prov 95.8 0.0055 1.2E-07 54.2 2.3 21 45-65 2-22 (180)
374 PRK00131 aroK shikimate kinase 95.8 0.0067 1.4E-07 53.3 2.9 24 42-65 3-26 (175)
375 TIGR00235 udk uridine kinase. 95.8 0.0073 1.6E-07 54.8 3.0 24 42-65 5-28 (207)
376 COG0467 RAD55 RecA-superfamily 95.8 0.022 4.8E-07 53.7 6.4 42 41-84 21-62 (260)
377 cd03215 ABC_Carb_Monos_II This 95.8 0.035 7.5E-07 49.2 7.3 24 42-65 25-48 (182)
378 KOG1909 Ran GTPase-activating 95.7 0.0065 1.4E-07 57.4 2.6 113 396-510 182-309 (382)
379 cd01135 V_A-ATPase_B V/A-type 95.7 0.061 1.3E-06 50.2 9.0 93 41-133 67-176 (276)
380 COG1428 Deoxynucleoside kinase 95.7 0.0066 1.4E-07 53.5 2.5 23 43-65 4-26 (216)
381 PRK10875 recD exonuclease V su 95.7 0.026 5.7E-07 59.4 7.3 23 43-65 167-189 (615)
382 cd01125 repA Hexameric Replica 95.7 0.059 1.3E-06 50.0 9.0 21 45-65 3-23 (239)
383 TIGR02322 phosphon_PhnN phosph 95.7 0.0077 1.7E-07 53.2 3.0 22 44-65 2-23 (179)
384 KOG0735 AAA+-type ATPase [Post 95.7 0.024 5.3E-07 58.6 6.7 71 43-134 701-771 (952)
385 PRK14737 gmk guanylate kinase; 95.7 0.0083 1.8E-07 53.2 3.1 24 42-65 3-26 (186)
386 PF06745 KaiC: KaiC; InterPro 95.7 0.011 2.4E-07 54.4 4.1 87 42-133 18-125 (226)
387 COG0396 sufC Cysteine desulfur 95.7 0.076 1.6E-06 47.6 8.9 64 112-175 151-216 (251)
388 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.037 7.9E-07 49.9 7.3 25 42-66 25-49 (200)
389 PRK04040 adenylate kinase; Pro 95.7 0.0074 1.6E-07 53.6 2.7 22 44-65 3-24 (188)
390 TIGR01360 aden_kin_iso1 adenyl 95.7 0.0085 1.9E-07 53.3 3.2 23 43-65 3-25 (188)
391 TIGR00554 panK_bact pantothena 95.7 0.035 7.5E-07 52.7 7.3 79 42-123 61-141 (290)
392 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.03 6.5E-07 48.2 6.4 121 42-169 24-146 (157)
393 cd00071 GMPK Guanosine monopho 95.7 0.0081 1.7E-07 50.4 2.7 21 45-65 1-21 (137)
394 PRK08149 ATP synthase SpaL; Va 95.7 0.073 1.6E-06 53.2 9.8 87 42-132 150-250 (428)
395 PRK06217 hypothetical protein; 95.7 0.015 3.3E-07 51.5 4.7 21 45-65 3-23 (183)
396 COG4240 Predicted kinase [Gene 95.7 0.049 1.1E-06 48.4 7.5 82 41-124 48-134 (300)
397 cd02021 GntK Gluconate kinase 95.7 0.0076 1.6E-07 51.5 2.5 21 45-65 1-21 (150)
398 cd03282 ABC_MSH4_euk MutS4 hom 95.7 0.021 4.4E-07 51.5 5.4 121 42-170 28-158 (204)
399 PRK00889 adenylylsulfate kinas 95.6 0.012 2.6E-07 51.7 3.9 23 43-65 4-26 (175)
400 TIGR01447 recD exodeoxyribonuc 95.6 0.022 4.8E-07 59.8 6.4 23 43-65 160-182 (586)
401 COG0529 CysC Adenylylsulfate k 95.6 0.013 2.9E-07 49.9 3.8 27 44-72 24-50 (197)
402 PRK06731 flhF flagellar biosyn 95.6 0.086 1.9E-06 49.5 9.6 90 42-134 74-165 (270)
403 KOG0734 AAA+-type ATPase conta 95.6 0.028 6.1E-07 56.2 6.5 26 42-67 336-361 (752)
404 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.089 1.9E-06 48.5 9.7 41 42-84 19-59 (229)
405 PRK14721 flhF flagellar biosyn 95.6 0.072 1.6E-06 53.2 9.5 88 42-132 190-278 (420)
406 PF00560 LRR_1: Leucine Rich R 95.6 0.0063 1.4E-07 32.8 1.2 19 431-449 2-20 (22)
407 COG2842 Uncharacterized ATPase 95.6 0.043 9.2E-07 51.1 7.2 99 43-150 94-192 (297)
408 KOG2123 Uncharacterized conser 95.6 0.0013 2.7E-08 60.1 -2.7 78 427-505 39-123 (388)
409 PRK08533 flagellar accessory p 95.6 0.068 1.5E-06 49.2 8.6 49 42-94 23-71 (230)
410 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.0089 1.9E-07 53.0 2.6 21 45-65 1-21 (183)
411 PRK10820 DNA-binding transcrip 95.5 0.0068 1.5E-07 63.1 2.1 63 19-84 204-266 (520)
412 PRK05439 pantothenate kinase; 95.5 0.046 9.9E-07 52.3 7.5 79 42-124 85-166 (311)
413 PRK12597 F0F1 ATP synthase sub 95.5 0.055 1.2E-06 54.6 8.3 91 41-132 141-246 (461)
414 PRK03846 adenylylsulfate kinas 95.5 0.016 3.5E-07 52.1 4.2 24 42-65 23-46 (198)
415 TIGR01420 pilT_fam pilus retra 95.5 0.014 3.1E-07 57.3 4.1 86 42-134 121-206 (343)
416 TIGR03263 guanyl_kin guanylate 95.5 0.011 2.4E-07 52.2 3.1 22 44-65 2-23 (180)
417 COG5635 Predicted NTPase (NACH 95.5 0.009 2E-07 65.9 3.0 134 45-183 224-368 (824)
418 COG0194 Gmk Guanylate kinase [ 95.5 0.011 2.4E-07 51.1 2.8 23 43-65 4-26 (191)
419 cd01136 ATPase_flagellum-secre 95.5 0.091 2E-06 50.7 9.3 87 42-132 68-168 (326)
420 cd00820 PEPCK_HprK Phosphoenol 95.5 0.012 2.7E-07 46.3 2.8 22 43-64 15-36 (107)
421 PHA00729 NTP-binding motif con 95.5 0.009 1.9E-07 54.0 2.3 22 44-65 18-39 (226)
422 cd02023 UMPK Uridine monophosp 95.5 0.0087 1.9E-07 53.8 2.3 21 45-65 1-21 (198)
423 KOG3347 Predicted nucleotide k 95.4 0.056 1.2E-06 44.8 6.6 70 43-123 7-76 (176)
424 PF10923 DUF2791: P-loop Domai 95.4 0.015 3.4E-07 57.6 4.1 97 19-117 25-128 (416)
425 PRK14738 gmk guanylate kinase; 95.4 0.016 3.5E-07 52.4 4.0 24 42-65 12-35 (206)
426 TIGR01069 mutS2 MutS2 family p 95.4 0.0081 1.8E-07 65.1 2.4 24 42-65 321-344 (771)
427 PRK00625 shikimate kinase; Pro 95.4 0.0094 2E-07 52.1 2.3 20 46-65 3-22 (173)
428 PF00560 LRR_1: Leucine Rich R 95.4 0.0052 1.1E-07 33.1 0.5 19 454-472 2-20 (22)
429 PRK06793 fliI flagellum-specif 95.4 0.067 1.4E-06 53.6 8.4 90 41-133 154-256 (432)
430 PRK10078 ribose 1,5-bisphospho 95.4 0.012 2.7E-07 52.3 3.0 22 44-65 3-24 (186)
431 COG1419 FlhF Flagellar GTP-bin 95.4 0.093 2E-06 51.4 9.1 88 42-133 202-291 (407)
432 cd01124 KaiC KaiC is a circadi 95.4 0.017 3.8E-07 51.3 4.0 37 46-84 2-38 (187)
433 TIGR03498 FliI_clade3 flagella 95.4 0.057 1.2E-06 54.0 7.9 88 42-132 139-239 (418)
434 cd03233 ABC_PDR_domain1 The pl 95.4 0.096 2.1E-06 47.2 8.9 25 42-66 32-56 (202)
435 COG1102 Cmk Cytidylate kinase 95.4 0.0091 2E-07 50.1 1.9 21 45-65 2-22 (179)
436 PRK06936 type III secretion sy 95.4 0.1 2.2E-06 52.3 9.6 87 42-132 161-261 (439)
437 TIGR02858 spore_III_AA stage I 95.4 0.043 9.4E-07 51.6 6.7 114 44-166 112-232 (270)
438 cd03243 ABC_MutS_homologs The 95.4 0.012 2.6E-07 53.1 2.9 23 43-65 29-51 (202)
439 PRK09270 nucleoside triphospha 95.4 0.063 1.4E-06 49.5 7.7 24 42-65 32-55 (229)
440 TIGR02655 circ_KaiC circadian 95.4 0.077 1.7E-06 54.8 9.1 86 42-132 262-362 (484)
441 PRK00300 gmk guanylate kinase; 95.3 0.013 2.9E-07 53.0 3.2 24 42-65 4-27 (205)
442 KOG2739 Leucine-rich acidic nu 95.3 0.012 2.6E-07 53.5 2.7 57 427-483 89-151 (260)
443 PRK14723 flhF flagellar biosyn 95.3 0.093 2E-06 56.2 9.7 88 43-133 185-273 (767)
444 PTZ00185 ATPase alpha subunit; 95.3 0.14 3E-06 51.9 10.3 93 41-133 187-299 (574)
445 PRK05201 hslU ATP-dependent pr 95.3 0.0099 2.1E-07 58.6 2.2 55 11-65 7-72 (443)
446 PRK11823 DNA repair protein Ra 95.3 0.04 8.7E-07 56.1 6.6 83 43-133 80-166 (446)
447 KOG0726 26S proteasome regulat 95.3 0.064 1.4E-06 49.6 7.1 31 41-73 217-247 (440)
448 PF12775 AAA_7: P-loop contain 95.2 0.014 2.9E-07 55.2 2.9 23 43-65 33-55 (272)
449 PRK09280 F0F1 ATP synthase sub 95.2 0.11 2.3E-06 52.5 9.3 90 41-132 142-247 (463)
450 TIGR00416 sms DNA repair prote 95.2 0.041 8.9E-07 56.0 6.5 84 42-133 93-180 (454)
451 PRK05922 type III secretion sy 95.2 0.14 3.1E-06 51.2 10.1 87 42-132 156-256 (434)
452 COG2401 ABC-type ATPase fused 95.2 0.022 4.7E-07 55.3 4.1 45 20-65 386-431 (593)
453 PRK08927 fliI flagellum-specif 95.2 0.12 2.5E-06 51.9 9.3 87 42-132 157-257 (442)
454 PF03205 MobB: Molybdopterin g 95.2 0.027 5.8E-07 47.3 4.2 38 44-83 1-39 (140)
455 PRK00409 recombination and DNA 95.2 0.0087 1.9E-07 65.1 1.6 24 42-65 326-349 (782)
456 PRK13947 shikimate kinase; Pro 95.2 0.012 2.6E-07 51.5 2.3 21 45-65 3-23 (171)
457 smart00534 MUTSac ATPase domai 95.2 0.02 4.4E-07 50.8 3.7 21 45-65 1-21 (185)
458 PRK07594 type III secretion sy 95.2 0.083 1.8E-06 52.9 8.2 87 42-132 154-254 (433)
459 KOG0728 26S proteasome regulat 95.2 0.22 4.7E-06 45.1 9.9 131 41-193 179-331 (404)
460 cd00046 DEXDc DEAD-like helica 95.2 0.055 1.2E-06 44.9 6.2 36 45-80 2-37 (144)
461 PRK10416 signal recognition pa 95.2 0.11 2.4E-06 50.2 8.9 39 42-82 113-151 (318)
462 PRK10751 molybdopterin-guanine 95.1 0.021 4.6E-07 49.6 3.6 24 42-65 5-28 (173)
463 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.26 5.6E-06 57.4 12.7 25 42-66 1629-1653(2281)
464 PF03266 NTPase_1: NTPase; In 95.1 0.015 3.3E-07 50.5 2.6 20 46-65 2-21 (168)
465 PRK14527 adenylate kinase; Pro 95.1 0.021 4.5E-07 51.1 3.5 24 42-65 5-28 (191)
466 TIGR03496 FliI_clade1 flagella 95.1 0.083 1.8E-06 52.8 8.0 87 42-132 136-236 (411)
467 cd01134 V_A-ATPase_A V/A-type 95.1 0.099 2.1E-06 50.4 8.1 49 42-94 156-205 (369)
468 TIGR02868 CydC thiol reductant 95.1 0.12 2.6E-06 54.4 9.7 24 42-65 360-383 (529)
469 COG4618 ArpD ABC-type protease 95.1 0.23 5E-06 49.8 10.7 23 43-65 362-384 (580)
470 PRK09099 type III secretion sy 95.1 0.099 2.1E-06 52.6 8.5 89 41-132 161-262 (441)
471 TIGR01313 therm_gnt_kin carboh 95.1 0.013 2.8E-07 50.9 2.0 20 46-65 1-20 (163)
472 COG2274 SunT ABC-type bacterio 95.0 0.077 1.7E-06 56.9 8.2 24 42-65 498-521 (709)
473 TIGR03522 GldA_ABC_ATP gliding 95.0 0.18 3.8E-06 48.7 10.0 24 42-65 27-50 (301)
474 PRK12339 2-phosphoglycerate ki 95.0 0.017 3.7E-07 51.6 2.7 23 43-65 3-25 (197)
475 COG1703 ArgK Putative periplas 95.0 0.019 4.1E-07 53.4 3.0 53 41-93 49-101 (323)
476 COG0003 ArsA Predicted ATPase 95.0 0.036 7.9E-07 53.3 5.1 47 43-91 2-48 (322)
477 TIGR03305 alt_F1F0_F1_bet alte 95.0 0.11 2.4E-06 52.1 8.6 91 41-132 136-241 (449)
478 PF03193 DUF258: Protein of un 95.0 0.025 5.5E-07 48.3 3.5 24 43-66 35-58 (161)
479 smart00072 GuKc Guanylate kina 95.0 0.021 4.5E-07 50.7 3.2 23 43-65 2-24 (184)
480 PRK07721 fliI flagellum-specif 95.0 0.11 2.4E-06 52.4 8.6 88 42-132 157-257 (438)
481 PRK06761 hypothetical protein; 95.0 0.034 7.3E-07 52.4 4.6 22 44-65 4-25 (282)
482 PRK14530 adenylate kinase; Pro 94.9 0.018 3.9E-07 52.5 2.8 22 44-65 4-25 (215)
483 PF03308 ArgK: ArgK protein; 94.9 0.016 3.4E-07 53.1 2.3 48 42-91 28-77 (266)
484 PRK14529 adenylate kinase; Pro 94.9 0.062 1.3E-06 48.9 6.2 20 46-65 3-22 (223)
485 cd01672 TMPK Thymidine monopho 94.9 0.052 1.1E-06 48.7 5.8 21 45-65 2-22 (200)
486 COG1126 GlnQ ABC-type polar am 94.9 0.025 5.4E-07 50.1 3.4 37 42-81 27-63 (240)
487 cd02020 CMPK Cytidine monophos 94.9 0.018 4E-07 48.8 2.6 21 45-65 1-21 (147)
488 TIGR00041 DTMP_kinase thymidyl 94.9 0.052 1.1E-06 48.6 5.7 22 44-65 4-25 (195)
489 TIGR00150 HI0065_YjeE ATPase, 94.9 0.023 4.9E-07 47.0 3.0 25 42-66 21-45 (133)
490 PF13555 AAA_29: P-loop contai 94.9 0.027 5.9E-07 39.4 2.9 21 44-64 24-44 (62)
491 cd02029 PRK_like Phosphoribulo 94.9 0.12 2.6E-06 48.0 7.8 77 45-123 1-84 (277)
492 PF13086 AAA_11: AAA domain; P 94.9 0.031 6.7E-07 51.5 4.2 21 45-65 19-39 (236)
493 PF09848 DUF2075: Uncharacteri 94.9 0.054 1.2E-06 53.5 6.1 41 44-84 2-42 (352)
494 PRK06995 flhF flagellar biosyn 94.9 0.12 2.6E-06 52.6 8.6 88 43-133 256-344 (484)
495 COG2019 AdkA Archaeal adenylat 94.9 0.02 4.4E-07 48.3 2.6 23 43-65 4-26 (189)
496 PRK13948 shikimate kinase; Pro 94.9 0.021 4.6E-07 50.3 2.9 24 42-65 9-32 (182)
497 PLN02796 D-glycerate 3-kinase 94.9 0.14 3E-06 49.5 8.6 23 43-65 100-122 (347)
498 COG0541 Ffh Signal recognition 94.9 0.11 2.4E-06 51.0 7.9 59 42-102 99-158 (451)
499 TIGR01039 atpD ATP synthase, F 94.9 0.17 3.7E-06 50.9 9.4 90 41-132 141-246 (461)
500 cd02034 CooC The accessory pro 94.8 0.11 2.5E-06 41.9 6.8 35 46-82 2-36 (116)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-62 Score=518.86 Aligned_cols=474 Identities=31% Similarity=0.491 Sum_probs=397.7
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChh-hhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDR-VQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT 100 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 100 (519)
||.+..++.+...+-. ....+++|+||||+||||||+.++++.. ++.+|+.++||.+++.++...++++|+..++.
T Consensus 161 VG~e~~~~kl~~~L~~---d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME---DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred ccHHHHHHHHHHHhcc---CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 8999999988876653 2338889999999999999999999877 99999999999999999999999999999987
Q ss_pred cCCC-CCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHh-cCCCCeeecC
Q 048774 101 HQNV-DNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKI-MGTLPAYQLK 178 (519)
Q Consensus 101 ~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~-~~~~~~~~l~ 178 (519)
.... .....+..+..+.+.|+.+|+|||+||+|+.. +|+.+..++|....||||++|||+++++.. ++....++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 5442 33344788899999999999999999999864 699999999988889999999999999988 6777889999
Q ss_pred CCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhccccc----Ccccc
Q 048774 179 KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWE----LPEER 254 (519)
Q Consensus 179 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~----~~~~~ 254 (519)
.|+.+|||+||.+.++.... ..++.+++.+++++++|+|+|||+.++|+.|+.+....+|.++.+..... .....
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred ccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999987644 33344899999999999999999999999999999999999998876544 22223
Q ss_pred cchhhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHHHHHHccCcccccC
Q 048774 255 CRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSAT 334 (519)
Q Consensus 255 ~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~ 334 (519)
..+..++..||+.|+++.|.||+|||.||+++.|+.+.++.+|+++|++.+.+.+...++.+++++++|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 57889999999999988999999999999999999999999999999999988788899999999999999999987652
Q ss_pred --CCCeEEEeHHHHHHHHHHhc-----ccceEeecc--cccccccccCCCeEEEEEEecCCccchhhhhhhcCCCCceec
Q 048774 335 --DASRFVMHDLINDLARWAAG-----ETYFTLEYT--SEVNKQQCFSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFL 405 (519)
Q Consensus 335 --~~~~~~~H~lv~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 405 (519)
+...+.|||+||++|.++++ .++...... .........+..++++++..+.. ...+.-..++++++|.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~---~~~~~~~~~~~L~tLl 551 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI---EHIAGSSENPKLRTLL 551 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccch---hhccCCCCCCccceEE
Confidence 45789999999999999999 555444432 11111222345667777776543 2334445566899998
Q ss_pred ccccccCCCCCCCchhhhhhc-cCCcccEEeecCc-cccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEecc
Q 048774 406 PVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGY-HISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLE 483 (519)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~ 483 (519)
+..+.. .....+..++ .++.|++||+++| .+.++|.+|+.|.+||||+++++.+..+|.++.+|.+|.+||+.
T Consensus 552 l~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 552 LQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred Eeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 877641 1233444444 8999999999987 55699999999999999999999999999999999999999999
Q ss_pred CCCchhHhHHhhcccccCCEEEccCC
Q 048774 484 DCRRLKKLCAAMGNLIKLHHLNNSNT 509 (519)
Q Consensus 484 ~~~~~~~lp~~~~~l~~L~~l~l~~~ 509 (519)
.+..+..+|.....|++|++|.+..-
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccchhhhcccccEEEeecc
Confidence 98777777776777999999988654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-47 Score=428.19 Aligned_cols=466 Identities=22% Similarity=0.299 Sum_probs=332.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc---CCC----------
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS---DDF---------- 85 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~---~~~---------- 85 (519)
+.||||+..++.+.+.+... ....++++|+||||+||||||+++|+ ++..+|++.+|++.. ...
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~-~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE-SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccc-cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 56899999988887655432 34567888999999999999999998 788899988887531 110
Q ss_pred --CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 86 --DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 86 --~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
....+...++.++........... ..+++.++++++||||||||+. ..++.+.....++++|++||||||++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 012344555665544432222222 4567788999999999999654 45666666666677899999999999
Q ss_pred hHHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHH
Q 048774 164 EVAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVL 243 (519)
Q Consensus 164 ~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l 243 (519)
.++...+....|+++.++.+||++||.++||.... ++..+.+++.+|+++|+|+||||+++|+.|+++ +..+|..++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 99877766789999999999999999999997543 345678899999999999999999999999987 789999999
Q ss_pred hcccccCcccccchhhHHHHhhhcCCc-chhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHHH
Q 048774 244 SSKIWELPEERCRIIPALAVSYYYLPP-TLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFKE 322 (519)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 322 (519)
.+...... ..+..+++.||+.|++ ..|.+|+++|+|+.+..++. +..|.+.+... +...++.
T Consensus 412 ~~L~~~~~---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~-----------~~~~l~~ 474 (1153)
T PLN03210 412 PRLRNGLD---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLD-----------VNIGLKN 474 (1153)
T ss_pred HHHHhCcc---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCC-----------chhChHH
Confidence 88665432 3589999999999986 58999999999998876643 44555554332 2234889
Q ss_pred HHHccCcccccCCCCeEEEeHHHHHHHHHHhcccce------Eeecccccc---cccccCCCeEEEEEEecCCccc-hhh
Q 048774 323 LRSRSFFQQSATDASRFVMHDLINDLARWAAGETYF------TLEYTSEVN---KQQCFSRNLCHLSYIRGDCDGV-QRF 392 (519)
Q Consensus 323 L~~~sLi~~~~~~~~~~~~H~lv~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~-~~~ 392 (519)
|++++||+... +++.||+++|+|+++...++.. .+....... ....-...+.++.+........ ...
T Consensus 475 L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 475 LVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 99999998653 5799999999999999866531 111000000 0011123344444432222111 112
Q ss_pred hhhhcCCCCceeccccccc------------------------CCCCCCCchhhhhhccCCcccEEeecCccccccCccc
Q 048774 393 EKLYDIQHLRTFLPVMLSN------------------------SLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSV 448 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 448 (519)
..+..|++|+.|.+..... .+.++-....|. .+.+.+|+.|++.++.++.+|..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cCCccCCcEEECcCcccccccccc
Confidence 3455666776665532210 000101112222 235678888888888888888888
Q ss_pred cCCCcCcEEeccCCC-CcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 449 GDLRYLRHLNLSRTE-IKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 449 ~~l~~L~~l~l~~~~-i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
..+++|++|+++++. +..+| .++.+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|..
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 888889999988765 44665 4778888888888888888888888888888888888888778888864
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.5e-42 Score=331.50 Aligned_cols=278 Identities=33% Similarity=0.542 Sum_probs=215.7
Q ss_pred ceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC
Q 048774 24 RKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN 103 (519)
Q Consensus 24 R~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 103 (519)
||.++++|.+.+.... ...++++|+|+||+||||||.+++++..++.+|+.++|++++...+...++..++.++.....
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 5556666655554322 467788899999999999999999966688999999999999998889999999999988854
Q ss_pred C--CCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcCC-CCeeecCCC
Q 048774 104 V--DNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMGT-LPAYQLKKL 180 (519)
Q Consensus 104 ~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~-~~~~~l~~L 180 (519)
. ...+.+.....+.+.++++++||||||+|+.. .|+.+...++....+++||||||+..+...... ...+++++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 56778889999999999999999999997653 677777777766679999999999988765543 568999999
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhcccccCc---ccccch
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWELP---EERCRI 257 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~~~~ 257 (519)
+.+||++||.+.++... .......++.+++|++.|+|+||||.++|++++.+....+|...+.+...... ....++
T Consensus 158 ~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp -HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987654 12233446789999999999999999999999665466788888765443322 234678
Q ss_pred hhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccC
Q 048774 258 IPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDH 305 (519)
Q Consensus 258 ~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~ 305 (519)
..++..||+.|+++.|+||++||+||.++.|+.+.++.+|+++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999999999999999999999875
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=1.3e-14 Score=162.06 Aligned_cols=296 Identities=15% Similarity=0.160 Sum_probs=187.5
Q ss_pred ccccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHH
Q 048774 16 AAHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTI 94 (519)
Q Consensus 16 ~~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 94 (519)
+.....+-|++.++.|... ...++++|+|++|.||||++..+.. . ++.++|+++... .+...+...+
T Consensus 11 ~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHH
Confidence 3446678899998888532 2468889999999999999999875 2 236899999754 4556666777
Q ss_pred HHHhhccCCC------------CCCCHHHHHHHHHHHhc--CCeEEEEecCccccCccchhhhccc-cCCCCCCcEEEEE
Q 048774 95 LTSIVTHQNV------------DNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRNYDDWVDFSRP-LGASAQGSKIIVS 159 (519)
Q Consensus 95 l~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~-l~~~~~~~~ilvT 159 (519)
+..+...... ...+.......+...+. +.+++|||||++..+.....++... +....++.+++||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7776432211 11222333333333332 6899999999976553333333333 3334457788899
Q ss_pred ecchhHH---HhcCCCCeeecC----CCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccC
Q 048774 160 TRNHEVA---KIMGTLPAYQLK----KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRG 232 (519)
Q Consensus 160 sr~~~~~---~~~~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~ 232 (519)
||..... ..........+. +|+.+|+.++|....... . .++.+.+|++.|+|+|+++.+++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 111112234555 899999999998754221 1 1567889999999999999999987765
Q ss_pred CCC-HHHHHHHHhcccccCcccccchhhHHH-HhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCC
Q 048774 233 EHD-RREWERVLSSKIWELPEERCRIIPALA-VSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVEN 310 (519)
Q Consensus 233 ~~~-~~~w~~~l~~~~~~~~~~~~~~~~~l~-~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~ 310 (519)
... .... ..... ......+...+. ..++.||++.++.++.+|+++ . ++.+...... |
T Consensus 232 ~~~~~~~~---~~~~~---~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l~~~l~---~--------- 290 (903)
T PRK04841 232 NNSSLHDS---ARRLA---GINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDALIVRVT---G--------- 290 (903)
T ss_pred CCCchhhh---hHhhc---CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHHHHHHc---C---------
Confidence 421 1111 11100 001122455443 347899999999999999986 3 3333221111 1
Q ss_pred ChHHHHHHHHHHHHHccCccc-ccCCCCeEEEeHHHHHHHHHHh
Q 048774 311 PSEDLGRDFFKELRSRSFFQQ-SATDASRFVMHDLINDLARWAA 353 (519)
Q Consensus 311 ~~~~~~~~~l~~L~~~sLi~~-~~~~~~~~~~H~lv~~~~~~~~ 353 (519)
.+.....+.+|.+.+++.. .+.+..+|..|++++++.+...
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1124678999999999653 3324468999999999998765
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.55 E-value=2.9e-13 Score=136.32 Aligned_cols=311 Identities=13% Similarity=0.077 Sum_probs=180.0
Q ss_pred eehhhhhhc-cccccccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 8 VRSDALEAA-AHDVFPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 8 ~~~~~l~~~-~~~~f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
+++..+... ..+.|+||+++++.|...+.... ++.++.++|+|++|+|||++++.++++.......-..+++++....
T Consensus 18 ~~~~~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 18 KDEEVLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CChhhCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 444444433 44779999999999988764432 3345667899999999999999999842222212345677777667
Q ss_pred CHHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccC----ccchhhhccccCCCC-CCcEEE
Q 048774 86 DVIRLTKTILTSIVTH-QNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRN----YDDWVDFSRPLGASA-QGSKII 157 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~-~~~~il 157 (519)
+...++..++.++... .+....+.++....+.+.+. +++.+||||+++... ...+..+...+.... .+..+|
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI 177 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVI 177 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEE
Confidence 7788889999988763 22233455666677776664 456899999997532 122333333222211 123356
Q ss_pred EEecchhHHHhcC-------CCCeeecCCCChhhHHHHHHHhhhCCC--CCCCCchHHHHHHHHHHhhCCCchhHHHHhh
Q 048774 158 VSTRNHEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQHSLGTR--DFSSHMSLEEIGRKIVTKCDGLPLAAQTLGG 228 (519)
Q Consensus 158 vTsr~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 228 (519)
.++.+........ ....+.+.+++.++..+++..++...- ....+..++.+++......|..+.|+.++-.
T Consensus 178 ~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred EEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6665543322211 124678999999999999988764321 1122222233333333334556777776643
Q ss_pred hcc----C-C--CCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCCC--CCccChHHHHHHHH-
Q 048774 229 LLR----G-E--HDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPK--DYEFEEEEIILLWC- 298 (519)
Q Consensus 229 ~l~----~-~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~--~~~i~~~~l~~~w~- 298 (519)
+.. . . -+.+...+++++. -.......+..||.++|..+..++.... ...+....+.....
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 321 1 1 1334444444322 1223455688999998888877764432 12344444443221
Q ss_pred -HCCCccCCCCCCChHHHHHHHHHHHHHccCcccc
Q 048774 299 -ASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQS 332 (519)
Q Consensus 299 -~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~ 332 (519)
+... ...........+++..|.+.++|...
T Consensus 328 l~~~~----~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 328 LCEEL----GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHc----CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 11122334567799999999999754
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=3.8e-12 Score=126.89 Aligned_cols=311 Identities=13% Similarity=0.084 Sum_probs=176.3
Q ss_pred eehhhhhhccc-cccccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------CceEEE
Q 048774 8 VRSDALEAAAH-DVFPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------DLKAWT 79 (519)
Q Consensus 8 ~~~~~l~~~~~-~~f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv 79 (519)
+++..|+..+. +.|+||+++++.|...+.... ++.++.++|+|++|+|||++++.+++. ..... -..+|+
T Consensus 3 ~~~~~l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 3 RNRDLLEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYV 80 (365)
T ss_pred CChhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEE
Confidence 34455554444 569999999999887765322 334567889999999999999999873 22211 145678
Q ss_pred EEcCCCCHHHHHHHHHHHhhc---cCCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccC---ccchhhhccc--cCC
Q 048774 80 CVSDDFDVIRLTKTILTSIVT---HQNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRN---YDDWVDFSRP--LGA 149 (519)
Q Consensus 80 ~~~~~~~~~~~~~~il~~l~~---~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---~~~~~~l~~~--l~~ 149 (519)
++....+...++..++.++.. ..+....+.++....+.+.+. +++++||||+++... ...+..+... ...
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 877777778889999998842 222122344455555555553 568899999997652 1112222222 111
Q ss_pred -CCCCcEEEEEecchhHHHhcC-------CCCeeecCCCChhhHHHHHHHhhhCCC-CCCCCchHHHHHHHHHHhhCCCc
Q 048774 150 -SAQGSKIIVSTRNHEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQHSLGTR-DFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 150 -~~~~~~ilvTsr~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.+....+|+++.......... ....+.+.+++.++..+++..++.... ...-..+.-+.+..++..+.|.|
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 112344555554433221111 124578999999999999988864211 11122222334555677777888
Q ss_pred hh-HHHHhhhc----cC---CCCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCC--CCCccCh
Q 048774 221 LA-AQTLGGLL----RG---EHDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLP--KDYEFEE 290 (519)
Q Consensus 221 La-l~~~~~~l----~~---~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~--~~~~i~~ 290 (519)
.. +.++-.+. .. .-+.+......... -.......+..||.+++.++..++... .+..+..
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~ 310 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRT 310 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 44 33322211 11 01222222222211 113345567788888887777665322 2334555
Q ss_pred HHHHHHHHHC-CCccCCCCCCChHHHHHHHHHHHHHccCccccc
Q 048774 291 EEIILLWCAS-GFLDHKEVENPSEDLGRDFFKELRSRSFFQQSA 333 (519)
Q Consensus 291 ~~l~~~w~~~-~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 333 (519)
..+...+... ..+ ............++..|...|+|+...
T Consensus 311 ~~~~~~y~~~~~~~---~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 311 GEVYEVYKEVCEDI---GVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 5555522211 111 112344567888999999999998653
No 7
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.38 E-value=1.3e-11 Score=126.63 Aligned_cols=298 Identities=17% Similarity=0.211 Sum_probs=194.4
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHH
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILT 96 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~ 96 (519)
....|-|.+.+..|.... ..++++|.-|+|.|||||+.+... .... =..+.|++++... +...+...++.
T Consensus 18 ~~~~v~R~rL~~~L~~~~------~~RL~li~APAGfGKttl~aq~~~--~~~~-~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVRPRLLDRLRRAN------DYRLILISAPAGFGKTTLLAQWRE--LAAD-GAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred cccccccHHHHHHHhcCC------CceEEEEeCCCCCcHHHHHHHHHH--hcCc-ccceeEeecCCccCCHHHHHHHHHH
Confidence 455667888888775432 468999999999999999999875 2222 2468999988774 56777888888
Q ss_pred HhhccCCC------------CCCCHHHHHHHHHHHhc--CCeEEEEecCccccCccchhh-hccccCCCCCCcEEEEEec
Q 048774 97 SIVTHQNV------------DNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRNYDDWVD-FSRPLGASAQGSKIIVSTR 161 (519)
Q Consensus 97 ~l~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~-l~~~l~~~~~~~~ilvTsr 161 (519)
.+..-.+. ...+...+.+.+..-+. .++.++||||..-........ +...+....++-..+||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 77743332 12233334444444332 468999999986433223332 3333444456899999999
Q ss_pred chhHHHhcC---CCCeeec----CCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCC
Q 048774 162 NHEVAKIMG---TLPAYQL----KKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEH 234 (519)
Q Consensus 162 ~~~~~~~~~---~~~~~~l----~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~ 234 (519)
...-..... .....++ -.|+.+|+.++|.......- ....++.++...+|.+-|+.+++=.++.+.
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L-------d~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL-------DAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC-------ChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 863321110 1122222 34789999999988642211 145688899999999999999999998544
Q ss_pred CHHHHHHHHhcccccCcccccchhh-HHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChH
Q 048774 235 DRREWERVLSSKIWELPEERCRIIP-ALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSE 313 (519)
Q Consensus 235 ~~~~w~~~l~~~~~~~~~~~~~~~~-~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~ 313 (519)
+.+.-..-++.. ..-+.. ....-++.||++.|..++.+|+++.- . +.|+.... .+
T Consensus 242 ~~~q~~~~LsG~-------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Lt-------------g~ 297 (894)
T COG2909 242 SAEQSLRGLSGA-------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALT-------------GE 297 (894)
T ss_pred cHHHHhhhccch-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHh-------------cC
Confidence 544433323211 111222 45667899999999999999998442 1 22222221 12
Q ss_pred HHHHHHHHHHHHccCcc-cccCCCCeEEEeHHHHHHHHHHhcc
Q 048774 314 DLGRDFFKELRSRSFFQ-QSATDASRFVMHDLINDLARWAAGE 355 (519)
Q Consensus 314 ~~~~~~l~~L~~~sLi~-~~~~~~~~~~~H~lv~~~~~~~~~~ 355 (519)
+.+...+++|.+++|.- +-++...+|..|++..+|.+.....
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 34667899999999974 3444678999999999999876654
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.32 E-value=1.7e-12 Score=120.83 Aligned_cols=196 Identities=17% Similarity=0.123 Sum_probs=101.1
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHH------
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTI------ 94 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i------ 94 (519)
|+||++|++.|.+.+.. +..+.++|+|+.|+|||+|++.+.+ ..++.-..++|+...... .......+
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEES-NESSLRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBS-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccch-hhhHHHHHHHHHHH
Confidence 89999999999876652 3468888999999999999999987 332221234444443332 22222222
Q ss_pred ----HHHhhccCCC---------CCCCHHHHHHHHHHHhc--CCeEEEEecCccccC------ccchhhhccccCC--CC
Q 048774 95 ----LTSIVTHQNV---------DNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRN------YDDWVDFSRPLGA--SA 151 (519)
Q Consensus 95 ----l~~l~~~~~~---------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~--~~ 151 (519)
...+....+. ...........+.+.+. +++++||+||++... ......+...+.. ..
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ 154 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc
Confidence 1122211110 01112222233333332 345999999996544 1111122222222 12
Q ss_pred CCcEEEEEecchhHHHh--------cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 152 QGSKIIVSTRNHEVAKI--------MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 152 ~~~~ilvTsr~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
....++++......... .+....+.+++++.+++.+++...+... . .. +.-++..++|++.++|+|..|
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHH
T ss_pred CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHHH
Confidence 34445555544444332 2223458999999999999999876443 1 11 112667899999999999988
Q ss_pred HH
Q 048774 224 QT 225 (519)
Q Consensus 224 ~~ 225 (519)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=3.1e-10 Score=108.10 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=113.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH----
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN---- 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~---- 117 (519)
..++++|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++.+.. ..+.......+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLI 116 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHH
Confidence 3568889999999999999999884221 111 12232 22334667788888887765532 222222233332
Q ss_pred HH-hcCCeEEEEecCccccCccchhhhccccC---CCCCCcEEEEEecchhHHHhcC----------CCCeeecCCCChh
Q 048774 118 KQ-LSGKKFLLVLDDVWNRNYDDWVDFSRPLG---ASAQGSKIIVSTRNHEVAKIMG----------TLPAYQLKKLSYN 183 (519)
Q Consensus 118 ~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~---~~~~~~~ilvTsr~~~~~~~~~----------~~~~~~l~~L~~~ 183 (519)
.. ..+++.++|+||++......++.+..... .......|++|..... ..... ....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 22 25788999999998766544554432221 1122335566665432 11111 1235789999999
Q ss_pred hHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhcc
Q 048774 184 DCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLR 231 (519)
Q Consensus 184 ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~ 231 (519)
|..+++...+..........-.++....|++.++|.|..|..++..+.
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 999999877654332111112267899999999999999999887763
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.25 E-value=3.4e-11 Score=130.20 Aligned_cols=314 Identities=14% Similarity=0.146 Sum_probs=189.8
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC---ceEEEEEcCCCC---HHHHHHHH
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD---LKAWTCVSDDFD---VIRLTKTI 94 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~---~~~wv~~~~~~~---~~~~~~~i 94 (519)
++||+.+++.|...++....+...++.+.|.+|||||+|++++.. .+.+.+. ...+-...+... ..+.++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 579999999999888887888888999999999999999999998 4444422 112222333322 23444455
Q ss_pred HHHhhccCC-------------------C--------------CC-------CCHHH-----HHHHHHHHh-cCCeEEEE
Q 048774 95 LTSIVTHQN-------------------V--------------DN-------LNLNK-----LQEELNKQL-SGKKFLLV 128 (519)
Q Consensus 95 l~~l~~~~~-------------------~--------------~~-------~~~~~-----~~~~l~~~l-~~~~~Llv 128 (519)
+.++..... . .. ..... .+..+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 554421110 0 00 00000 112222222 45699999
Q ss_pred ecCccccCccchhhhccccCCCC------CCcEEEEEecch--hHHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCC
Q 048774 129 LDDVWNRNYDDWVDFSRPLGASA------QGSKIIVSTRNH--EVAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFS 200 (519)
Q Consensus 129 lDdv~~~~~~~~~~l~~~l~~~~------~~~~ilvTsr~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 200 (519)
+||+++.+...+.-+........ ...-.+.|.+.. .+.........+.+.||+..+...+..........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 99998777655444322221111 112222333332 22222233467999999999999999887643222
Q ss_pred CCchHHHHHHHHHHhhCCCchhHHHHhhhccCC------CCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhh
Q 048774 201 SHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGE------HDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQ 274 (519)
Q Consensus 201 ~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 274 (519)
...+....|.++..|+|+.+..+-..+..+ .+...|+....+....... ..+...+..-+++||...|+
T Consensus 238 ---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~--~~vv~~l~~rl~kL~~~t~~ 312 (849)
T COG3899 238 ---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT--DAVVEFLAARLQKLPGTTRE 312 (849)
T ss_pred ---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh--HHHHHHHHHHHhcCCHHHHH
Confidence 125678899999999999999999888764 3445565443322211111 11455688899999999999
Q ss_pred HhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHHHHHHccCcccccC-----CCCeE---EEeHHHH
Q 048774 275 CFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSAT-----DASRF---VMHDLIN 346 (519)
Q Consensus 275 ~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~-----~~~~~---~~H~lv~ 346 (519)
.+...|+++..++ ...|...+- +.....+....+.|.....+-..+. ..... ..|+.|+
T Consensus 313 Vl~~AA~iG~~F~--l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 313 VLKAAACIGNRFD--LDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHhCccCC--HHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999986655 555555552 1234456666666666555532211 12222 6799999
Q ss_pred HHHHHHhccc
Q 048774 347 DLARWAAGET 356 (519)
Q Consensus 347 ~~~~~~~~~~ 356 (519)
+.+.....++
T Consensus 380 qaaY~~i~~~ 389 (849)
T COG3899 380 QAAYNLIPES 389 (849)
T ss_pred HHHhccCchh
Confidence 9887555443
No 11
>PF05729 NACHT: NACHT domain
Probab=99.19 E-value=1.5e-10 Score=101.53 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=86.3
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHH---HHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVI---RLTKTILTSIVTHQNVDNLNLNKLQEEL 116 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 116 (519)
++++|+|.+|+||||+++.++.+...... +...+|.+........ .+...+..+.... ........ .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~--~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELL--Q 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHH--H
Confidence 56789999999999999998874222222 3456666666554332 2333333332221 11111111 1
Q ss_pred HHHhcCCeEEEEecCccccCccc-------hhh-hccccCC-CCCCcEEEEEecchhH---HHhcCCCCeeecCCCChhh
Q 048774 117 NKQLSGKKFLLVLDDVWNRNYDD-------WVD-FSRPLGA-SAQGSKIIVSTRNHEV---AKIMGTLPAYQLKKLSYND 184 (519)
Q Consensus 117 ~~~l~~~~~LlvlDdv~~~~~~~-------~~~-l~~~l~~-~~~~~~ilvTsr~~~~---~~~~~~~~~~~l~~L~~~e 184 (519)
......++++||+|+++...... +.. +...+.. ..++++++||||.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 11225789999999996543211 112 2222222 2468999999998765 3334444679999999999
Q ss_pred HHHHHHHhh
Q 048774 185 CLAIFAQHS 193 (519)
Q Consensus 185 a~~L~~~~~ 193 (519)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999997753
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=1.9e-10 Score=112.39 Aligned_cols=276 Identities=16% Similarity=0.077 Sum_probs=140.9
Q ss_pred cccccceeeeEeecCCCCCC--CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETM--PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+||+++++.+...+... .+...+.++|+|++|+|||++|+.+++ .....+ .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecc-cccChHHHHHHHH
Confidence 55999999988876544321 123456778999999999999999988 333221 111111 1111111222222
Q ss_pred HhhccCCCCCCCHH----HHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcC--
Q 048774 97 SIVTHQNVDNLNLN----KLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG-- 170 (519)
Q Consensus 97 ~l~~~~~~~~~~~~----~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~-- 170 (519)
.+....-.-.++.+ .....+...+.+.+..+++|+..+.. .+...++ +.+-|..|++...+.....
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHh
Confidence 22111100000000 11122333333444444444432211 0111111 2344556666443322211
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhcccccC
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWEL 250 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~ 250 (519)
....+.+++++.++..+++.+.+.......+ ++.+..|++.|+|.|..+..+...+. .|..... ...+
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~--~~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG--DGVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC--CCCC
Confidence 1245889999999999999988765433222 56788999999999965554443322 1111100 0111
Q ss_pred cccc-cchhhHHHHhhhcCCcchhhHhh-hhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHH-HHHHcc
Q 048774 251 PEER-CRIIPALAVSYYYLPPTLKQCFA-YCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFK-ELRSRS 327 (519)
Q Consensus 251 ~~~~-~~~~~~l~~s~~~L~~~~~~~ll-~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~s 327 (519)
.... ......+...+..|++..+..+. .+..|..+ ++..+.+.... | .....++..++ .|++.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhHHHHHcC
Confidence 1000 11223344556677777777776 45556544 45555553322 1 12234566677 999999
Q ss_pred Cccccc
Q 048774 328 FFQQSA 333 (519)
Q Consensus 328 Li~~~~ 333 (519)
||+...
T Consensus 306 li~~~~ 311 (328)
T PRK00080 306 FIQRTP 311 (328)
T ss_pred CcccCC
Confidence 997543
No 13
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.14 E-value=1.2e-09 Score=113.45 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=161.5
Q ss_pred cccccceeeeEeecCCCCCCCC--CCCCeEEEEecCCchHHHHHHHHhCChhh---hcCCC--ceEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPE--WPEPMHVFAGFGGLGKTTLARLAYNDDRV---QNHFD--LKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~--~~~~~~~I~G~~G~GKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~~~~ 91 (519)
+.++|||++++.|...+...-. ++..++.|+|++|+|||++++.+.+.... ....+ .++++++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 6788999999999887665432 23356679999999999999999873211 11112 35678877777888899
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHhc---CCeEEEEecCccccCccchhhhccccCC-CCCCcEEEE--EecchhH
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQLS---GKKFLLVLDDVWNRNYDDWVDFSRPLGA-SAQGSKIIV--STRNHEV 165 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~~~~ilv--Tsr~~~~ 165 (519)
..|..++....+............+...+. ....+||||+++......-+.+...+.+ ...++++++ +|.+.+.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 999988855443333334445555554442 2345999999964321111112211111 113455443 3432211
Q ss_pred ----HHhcC---CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCC----
Q 048774 166 ----AKIMG---TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEH---- 234 (519)
Q Consensus 166 ----~~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~---- 234 (519)
...+. ....+...+++.++-.+++..++........+..++..|..+++..|-.=.||.++-.+.....
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 11111 1234677999999999999998864333233333444445444455555566666655543211
Q ss_pred CHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCCC---CCccChHHHHHHHHHCCC--ccCCCCC
Q 048774 235 DRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPK---DYEFEEEEIILLWCASGF--LDHKEVE 309 (519)
Q Consensus 235 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~---~~~i~~~~l~~~w~~~~~--~~~~~~~ 309 (519)
..+....+..+. -...+...+..||.+.|-+|..+..... ...++...+........- ...-...
T Consensus 995 T~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~ 1064 (1164)
T PTZ00112 995 VPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMC 1064 (1164)
T ss_pred CHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCC
Confidence 111111111110 1123455667788777766664443222 113444444332211110 0000111
Q ss_pred CChHHHHHHHHHHHHHccCcccc
Q 048774 310 NPSEDLGRDFFKELRSRSFFQQS 332 (519)
Q Consensus 310 ~~~~~~~~~~l~~L~~~sLi~~~ 332 (519)
...+ ...+++.+|...|+|-..
T Consensus 1065 plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1065 SNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CcHH-HHHHHHHHHHhcCeEEec
Confidence 2233 566677777777776543
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=4.9e-10 Score=108.68 Aligned_cols=275 Identities=14% Similarity=0.047 Sum_probs=138.1
Q ss_pred cccccceeeeEeecCCCCCC--CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETM--PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+||+++++.|...+... .....+.++|+|++|+|||+||+.+++ .....+ ..+.......... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCchh-HHHHHH
Confidence 35899999988776544321 122345678999999999999999987 333222 1111111111111 112222
Q ss_pred HhhccCCCCCCCH----HHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcC--
Q 048774 97 SIVTHQNVDNLNL----NKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG-- 170 (519)
Q Consensus 97 ~l~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~-- 170 (519)
.+....-.-.++. ......+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|++...+.....
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~-----~~~~~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR-----SVRLDL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc-----ceeecC---CCeEEEEecCCccccCHHHHhh
Confidence 2221110000000 111223344444444455555442211 111111 12455566676643322211
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhcccccC
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWEL 250 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~ 250 (519)
....+.+++++.+|..+++.+.+.......+ ++.+..|++.|+|.|..+..++..+. ...........
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCCc
Confidence 1245789999999999999988754332111 56778899999999977655554321 11000000001
Q ss_pred cccc-cchhhHHHHhhhcCCcchhhHhhhh-ccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHH-HHHHcc
Q 048774 251 PEER-CRIIPALAVSYYYLPPTLKQCFAYC-SLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFK-ELRSRS 327 (519)
Q Consensus 251 ~~~~-~~~~~~l~~s~~~L~~~~~~~ll~l-a~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~s 327 (519)
.... ......+...+..+++..+..+..+ +.+..+ .+..+.+.... |. ....+...++ .|++.+
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHcC
Confidence 1000 0111224445667777777777634 555433 44444433222 11 2234666678 699999
Q ss_pred Ccccc
Q 048774 328 FFQQS 332 (519)
Q Consensus 328 Li~~~ 332 (519)
||+..
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99744
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.09 E-value=1.1e-11 Score=102.91 Aligned_cols=116 Identities=26% Similarity=0.390 Sum_probs=67.4
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCc-------
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIK------- 465 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~------- 465 (519)
|.+..+.+|..|.+..+ ...+.|.+++++++|+.|+++-|.+..+|..+++++.|+.|++++|++.
T Consensus 50 pnia~l~nlevln~~nn-------qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNN-------QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred CcHHHhhhhhhhhcccc-------hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc
Confidence 44445555554433322 2355666677777777777777777777777777777777777665443
Q ss_pred ------------------ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 466 ------------------TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 466 ------------------~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
.+|++++++.+|+.|.++.| .+-++|.+++.++.|+.|.+.+|. +.-+|.
T Consensus 123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 24445555555555555554 455555555555555555555555 444443
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-11 Score=102.43 Aligned_cols=99 Identities=25% Similarity=0.353 Sum_probs=81.4
Q ss_pred hhhcCCCCceecccccccCCCCCCC-chhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchh
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLA-PSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVS 472 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~ 472 (519)
.+..++.|..|.+..++ +. ...|..++.|..|+.|+++.|.++-+|+.++.+++|+.|.++.|.+-++|..++
T Consensus 97 gfgs~p~levldltynn------l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNN------LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred ccCCCchhhhhhccccc------cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 34455556655555444 22 234555678999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeccCCCchhHhHHhhcccc
Q 048774 473 KLYNLHTLLLEDCRRLKKLCAAMGNLI 499 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~~~~~l~ 499 (519)
.+.+|+.|.+.+| .+..+|++++++.
T Consensus 171 ~lt~lrelhiqgn-rl~vlppel~~l~ 196 (264)
T KOG0617|consen 171 DLTRLRELHIQGN-RLTVLPPELANLD 196 (264)
T ss_pred HHHHHHHHhcccc-eeeecChhhhhhh
Confidence 9999999999998 8888998887754
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.94 E-value=2.3e-08 Score=94.90 Aligned_cols=261 Identities=17% Similarity=0.182 Sum_probs=141.4
Q ss_pred ehhhhhhccc-cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCH
Q 048774 9 RSDALEAAAH-DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDV 87 (519)
Q Consensus 9 ~~~~l~~~~~-~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 87 (519)
++..|+...+ ...+|.+..+.++.. .+.-.-.+++||+|+||||||+.+.. .....|. .++...+.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~g 85 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSG 85 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----Eecccccc
Confidence 4455555544 445677777666643 22345567899999999999999987 4444442 22222221
Q ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHH-HHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec--chh
Q 048774 88 IRLTKTILTSIVTHQNVDNLNLNKLQEEL-NKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR--NHE 164 (519)
Q Consensus 88 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr--~~~ 164 (519)
.+-++. ..+.- .....+++.+|++|.++..+-.+.+.+...+ -.|.-|+|.+. ++.
T Consensus 86 vkdlr~------------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPs 144 (436)
T COG2256 86 VKDLRE------------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPS 144 (436)
T ss_pred HHHHHH------------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCC
Confidence 111222 22222 1223478999999999766544444444333 34777776544 332
Q ss_pred H---HHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCC--Cc-hHHHHHHHHHHhhCCCchh----HHHHhhhccCCC
Q 048774 165 V---AKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSS--HM-SLEEIGRKIVTKCDGLPLA----AQTLGGLLRGEH 234 (519)
Q Consensus 165 ~---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~--~~-~~~~~~~~i~~~~~g~PLa----l~~~~~~l~~~~ 234 (519)
. ........++.+++|+.+|-.+++.+.+......-. .. -.++....+++.++|--.+ +++++...+...
T Consensus 145 F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~ 224 (436)
T COG2256 145 FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE 224 (436)
T ss_pred eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc
Confidence 1 111223478999999999999999984433222111 11 1145667788888876643 344444444331
Q ss_pred --CHHHHHHHHhcccccCcccc---cchhhHHHHhhhcCCcchhhHhhhhccCCCCCc---cChHHHHHHHHHCCCcc
Q 048774 235 --DRREWERVLSSKIWELPEER---CRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYE---FEEEEIILLWCASGFLD 304 (519)
Q Consensus 235 --~~~~w~~~l~~~~~~~~~~~---~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~---i~~~~l~~~w~~~~~~~ 304 (519)
..+..+..+.+.......+. ..+..++..|...=++++ .++...-++..|.+ |-+..++.-|-.-|...
T Consensus 225 ~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA-ALyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 225 VLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA-ALYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH-HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 34555555555443333332 345666666666665553 33333334444432 33444444444444433
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.91 E-value=3.3e-09 Score=88.97 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=81.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-----CCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-----FDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEEL 116 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l 116 (519)
..++++|+|++|+|||++++.+.++ .... -..++|+++....+...+...++..+...... ..+.+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHH
Confidence 3567889999999999999999883 3221 34677999988888999999999999988763 56677777888
Q ss_pred HHHhcCCe-EEEEecCcccc-CccchhhhccccCCCCCCcEEEEEecc
Q 048774 117 NKQLSGKK-FLLVLDDVWNR-NYDDWVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 117 ~~~l~~~~-~LlvlDdv~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
.+.+...+ .+||+|+++.. +...+..+..... ..+.++++..++
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 88876654 59999999765 5434444433323 457788888776
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.87 E-value=3.4e-09 Score=119.52 Aligned_cols=118 Identities=26% Similarity=0.335 Sum_probs=82.4
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcch
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESV 471 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~ 471 (519)
.+..+++|++|.+.++. +....|..+.++++|+.|++++|.+. .+|..++.+++|++|++++|.++ .+|..+
T Consensus 183 ~~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQ------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred hhhhCcCCCeeeccCCC------CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 44556666666655544 34455666677777777777777776 56777777777777777777776 677777
Q ss_pred hcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+++++|+.|++++|.....+|..+.++++|++|++++|...+.+|.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 7777777777777755556777777777888888887775555664
No 20
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=3.1e-08 Score=91.30 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=92.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+|+..+++ ....+...+.|++..... .... .+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc
Confidence 446678999999999999999998 444344456676654210 0000 1111112
Q ss_pred CCeEEEEecCccccC-ccchh-hhccccCCC-CCCcEEE-EEecc---------hhHHHhcCCCCeeecCCCChhhHHHH
Q 048774 122 GKKFLLVLDDVWNRN-YDDWV-DFSRPLGAS-AQGSKII-VSTRN---------HEVAKIMGTLPAYQLKKLSYNDCLAI 188 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~-~~~~~-~l~~~l~~~-~~~~~il-vTsr~---------~~~~~~~~~~~~~~l~~L~~~ea~~L 188 (519)
+.-+|+|||+|... ...|. .+...+... ..+..++ +|++. +.+...+.....+++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 23489999997532 12232 222222211 1345554 45543 34445555556889999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHh
Q 048774 189 FAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLG 227 (519)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 227 (519)
+.+.+.......+ ++...-|++.+.|....+..+-
T Consensus 170 L~~~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 170 LQRNAYQRGIELS----DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 9988865432222 5667778888887766555443
No 21
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.85 E-value=3.2e-09 Score=119.74 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=101.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccc-ccCccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~ 452 (519)
..++.+.+..+...+. ....+..+++|+.|.+.++. +....|..+.++++|++|++++|.+. .+|..++.++
T Consensus 140 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 140 PNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNV------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred CCCCEEECcCCccccc-CChHHhcCCCCCEEECccCc------ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 3444555544433221 22456677888888776665 44566777778888888888888877 6688888888
Q ss_pred cCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 453 ~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
+|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 8888888888887 78888888888888888888656678888888888888888888755666653
No 22
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.85 E-value=1.5e-09 Score=97.01 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH 72 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~ 72 (519)
|+||++++++|.+.+.....+..+.++|+|++|+|||+|.++++. .....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 899999999999988655566778888999999999999999988 44444
No 23
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=3e-09 Score=101.52 Aligned_cols=293 Identities=17% Similarity=0.123 Sum_probs=186.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCC-ceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD-LKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
..+.+.++|+||+||||++-.+.. ++..|. .+.++++..-.+...+.......+..+.. +.+...+.+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 457778999999999999988875 455664 56666766666666666666666766654 2234455666677
Q ss_pred cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcCCCCeeecCCCChh-hHHHHHHHhhhCCCCC
Q 048774 121 SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMGTLPAYQLKKLSYN-DCLAIFAQHSLGTRDF 199 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~~~ 199 (519)
.+++.++|+||....- .........+....+.-.|+.|+|..... .....+.+..++.. ++.++|...+......
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7889999999973211 11222333344444566788888875432 23456778888765 7899987776443321
Q ss_pred -CCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhc-------ccccCcccccchhhHHHHhhhcCCcc
Q 048774 200 -SSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSS-------KIWELPEERCRIIPALAVSYYYLPPT 271 (519)
Q Consensus 200 -~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~-------~~~~~~~~~~~~~~~l~~s~~~L~~~ 271 (519)
.-...-.....+|+++.+|.|++|..+++..+.- ...+-...+.. -............+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1122225678899999999999999999988775 22222222211 11111122246778999999999999
Q ss_pred hhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHHHHHHHHccCcccccC-CCCeEEEeHHHHHHHH
Q 048774 272 LKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSAT-DASRFVMHDLINDLAR 350 (519)
Q Consensus 272 ~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~-~~~~~~~H~lv~~~~~ 350 (519)
++..|..++.|...+..... .|.+.|-.... ........+-.+++.+++...+. +...|+.-.-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~l~----~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLA----LAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhcccHH----HHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999888765532 34443322100 11123445667888888765443 3445666666777776
Q ss_pred HHhcc
Q 048774 351 WAAGE 355 (519)
Q Consensus 351 ~~~~~ 355 (519)
.+..+
T Consensus 312 aeL~r 316 (414)
T COG3903 312 AELHR 316 (414)
T ss_pred HHHHh
Confidence 55544
No 24
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.9e-07 Score=89.17 Aligned_cols=294 Identities=14% Similarity=0.062 Sum_probs=163.7
Q ss_pred ccccccceeeeEeecCCCCCCCCCCC-CeEEEEecCCchHHHHHHHHhCChhhhcCCC-c-eEEEEEcCCCCHHHHHHHH
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPE-PMHVFAGFGGLGKTTLARLAYNDDRVQNHFD-L-KAWTCVSDDFDVIRLTKTI 94 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~-~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~i 94 (519)
++.+++|+++++.++..+...-.+.. .-++|+|++|+|||+.++.+.+ ++..... . ++++++....+..+++..+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 46699999999999876554443333 3377999999999999999998 5554432 2 7899999999999999999
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccCccchhhhccccCCCCC-CcEEE--EEecchhHHHh-
Q 048774 95 LTSIVTHQNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQ-GSKII--VSTRNHEVAKI- 168 (519)
Q Consensus 95 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~-~~~il--vTsr~~~~~~~- 168 (519)
++++..... ......+....+.+.+. ++.+++|||+++..-...-+.+...+..... .++|+ ..+-+......
T Consensus 94 ~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999973322 34455556666666664 5789999999964322111112111221111 34333 33433322222
Q ss_pred -------cCCCCeeecCCCChhhHHHHHHHhhhCCCCC-CCCchHHHHHHHHHHhhC-CCchhHHHHhhhcc--CC----
Q 048774 169 -------MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDF-SSHMSLEEIGRKIVTKCD-GLPLAAQTLGGLLR--GE---- 233 (519)
Q Consensus 169 -------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-g~PLal~~~~~~l~--~~---- 233 (519)
.+. ..+...+.+.+|-.+++..++-.+-.. ....+.-+.+..++..-+ -.=.||.++..+.. +.
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCC
Confidence 222 347789999999999998887543211 222223333444444444 33344443332221 10
Q ss_pred -CCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHH--HHHHCCCccCCCCCC
Q 048774 234 -HDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIIL--LWCASGFLDHKEVEN 310 (519)
Q Consensus 234 -~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~--~w~~~~~~~~~~~~~ 310 (519)
-..+.-.....+ --.......+..|+.+.+..+...+... ..+....+-. .+....+-.
T Consensus 252 ~v~~~~v~~a~~~----------~~~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~------ 313 (366)
T COG1474 252 KVSEDHVREAQEE----------IERDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT------ 313 (366)
T ss_pred CcCHHHHHHHHHH----------hhHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc------
Confidence 011111111000 0122445557788888777665555443 2333333322 222221111
Q ss_pred ChHHHHHHHHHHHHHccCcccccC
Q 048774 311 PSEDLGRDFFKELRSRSFFQQSAT 334 (519)
Q Consensus 311 ~~~~~~~~~l~~L~~~sLi~~~~~ 334 (519)
.+....+++.+|...+++.....
T Consensus 314 -~~~~~~~ii~~L~~lgiv~~~~~ 336 (366)
T COG1474 314 -SQRRFSDIISELEGLGIVSASLI 336 (366)
T ss_pred -hHHHHHHHHHHHHhcCeEEeeec
Confidence 23355677888888888865443
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.77 E-value=5.1e-08 Score=90.18 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+||+.+++ .........+++++..-... ...+ ...+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~~~~~~~---~~~~----------------------~~~~~ 89 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPLAELAQA---DPEV----------------------LEGLE 89 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeHHHHHHh---HHHH----------------------Hhhcc
Confidence 467888999999999999999987 33333334555554432100 0011 11122
Q ss_pred CCeEEEEecCccccCccc--hhhhccccCC-CCCCcEEEEEecchh---------HHHhcCCCCeeecCCCChhhHHHHH
Q 048774 122 GKKFLLVLDDVWNRNYDD--WVDFSRPLGA-SAQGSKIIVSTRNHE---------VAKIMGTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~--~~~l~~~l~~-~~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~ 189 (519)
. .-+|||||++...... ...+...+.. ...+..+|+||+... +...+.....+++.+++.++...++
T Consensus 90 ~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 90 Q-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred c-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence 2 2389999997543211 2223322221 112457888887432 2222322357899999999989988
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHh
Q 048774 190 AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLG 227 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 227 (519)
...+...... .+ ++..+.+++.+.|+|..+.-+.
T Consensus 169 ~~~~~~~~~~-~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 169 QSRAARRGLQ-LP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHcCCC-CC---HHHHHHHHHhccCCHHHHHHHH
Confidence 8765332221 11 5667788888999988766554
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=1.1e-07 Score=95.76 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=98.3
Q ss_pred ccccceeeeEe---ecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 20 VFPCRKQAFIW---AASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 20 ~f~gR~~~~~~---l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
.|+|++..+.. |...+. .+..+.++|+|++|+||||+|+.+++ .....| +.+........-.+.++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~---~~~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIE---AGRLSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVKDLREVIE 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHH---cCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHHHHHHHHH
Confidence 47777777655 443332 22345677999999999999999987 332222 222221111111112211
Q ss_pred HhhccCCCCCCCHHHHHHHHHHH-hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEE--ecchh--HH-HhcC
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQ-LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVS--TRNHE--VA-KIMG 170 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT--sr~~~--~~-~~~~ 170 (519)
..... ..+++.+++||+++.........+...+.. +..+++. |.+.. +. ....
T Consensus 83 ------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 83 ------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhc
Confidence 11111 135778999999986654444444444432 4445543 33321 11 1112
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
....+.+.+++.++...++.+.+....... ..-.++....|++.|+|.+..+.-+
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 236789999999999999988653311100 0112566788999999999765433
No 27
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.75 E-value=2.1e-09 Score=106.53 Aligned_cols=113 Identities=29% Similarity=0.368 Sum_probs=88.3
Q ss_pred hhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcch
Q 048774 392 FEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESV 471 (519)
Q Consensus 392 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~ 471 (519)
+..+..++.||++....++. ...-+|+.++.+..|.+||+|+|.+.+.|..+..-+++-.|++++|.|..+|.++
T Consensus 71 hGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~l 145 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSL 145 (1255)
T ss_pred hhhhccchhhHHHhhhcccc-----ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchH
Confidence 35666777788777766652 2244678888888888888888888888888888888888888888888888754
Q ss_pred -hcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 472 -SKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 472 -~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
.+|..|-.||||+| .+..+|+.+..|..|++|.|++|+
T Consensus 146 finLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred HHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh
Confidence 47777888888887 788888888888888888888876
No 28
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.75 E-value=2e-09 Score=106.76 Aligned_cols=90 Identities=28% Similarity=0.381 Sum_probs=44.9
Q ss_pred hccCCcccEEeecCcccc--ccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHh-hcccccC
Q 048774 425 LFKLQRLRIFSLRGYHIS--ELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKL 501 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L 501 (519)
++.+++||.+.+..|+++ -+|+.|..|..|..|++++|.+.+.|..+..-+++-+|+||+| ++..+|.. +-+|+-|
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDL 152 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhH
Confidence 344444555555555444 3455555555555555555555555555555555555555554 44445433 3445555
Q ss_pred CEEEccCCCCCCCCC
Q 048774 502 HHLNNSNTDSLEEMP 516 (519)
Q Consensus 502 ~~l~l~~~~~l~~lP 516 (519)
-+||||+|. +..+|
T Consensus 153 LfLDLS~Nr-Le~LP 166 (1255)
T KOG0444|consen 153 LFLDLSNNR-LEMLP 166 (1255)
T ss_pred hhhccccch-hhhcC
Confidence 555555544 44444
No 29
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=1.1e-07 Score=98.71 Aligned_cols=198 Identities=12% Similarity=0.104 Sum_probs=109.0
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|.+..++.|...+.. +.-.+.++++|+.|+||||+|+.+.+.......+. ...++.+.+-..+...-...+.
T Consensus 17 EVIGQe~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 17 SLVGQEHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---SQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred HHcCcHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---CCCCcccHHHHHHhcCCCceEE
Confidence 357888888877665442 22245667999999999999998876321111110 0001111000000000000000
Q ss_pred ccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HHh-cCCCC
Q 048774 100 THQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AKI-MGTLP 173 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~-~~~~~ 173 (519)
.-........++....+... ..++.-++|||+++..+...+..+...+.......++|++|++..- ... .....
T Consensus 92 EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq 171 (830)
T PRK07003 92 EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCL 171 (830)
T ss_pred EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheE
Confidence 00000111223322222221 1245568999999877665666676666655567888888876432 111 12236
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHH
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTL 226 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 226 (519)
.++++.++.++..+.+.+.+...+...+ ++....|++.++|.. -++.++
T Consensus 172 ~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 172 QFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999887644332111 567788999998865 455553
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=9.4e-08 Score=94.24 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=104.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-CC-ceEEEEEcCCCC-H-HHHHH--
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FD-LKAWTCVSDDFD-V-IRLTK-- 92 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~-~~~wv~~~~~~~-~-~~~~~-- 92 (519)
+.|+|++..++.|...... +..+.++++|++|+|||++|+.+++ ..... +. ..+.+++..... . ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCc
Confidence 4577999998888765542 2334577999999999999999887 33222 21 233444322100 0 00000
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HH
Q 048774 93 TILTSIVTHQNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VA 166 (519)
Q Consensus 93 ~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~ 166 (519)
.....+...........+.....+.... ...+-++|+||++.........+...+......+++|+|+.... +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 0000000000000111222222222221 13345899999965543333334444433344677887775432 22
Q ss_pred Hhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 167 KIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 167 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
..+ .....+.+.+++.++...++...+...+...+ ++.+..+++.++|.+-.+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 222 12356788999999999998887654332212 5678888889988765543
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.66 E-value=6.9e-09 Score=97.82 Aligned_cols=97 Identities=31% Similarity=0.500 Sum_probs=73.1
Q ss_pred CchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccC-----------------------cc-hhc
Q 048774 418 APSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLP-----------------------ES-VSK 473 (519)
Q Consensus 418 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp-----------------------~~-~~~ 473 (519)
....|..++.+++|..|++++|.+.++|.+.+.+..||.|+++.|++..+| ++ +.+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 344455555667777777777766677766666666777777766655554 33 778
Q ss_pred CCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 474 LYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+.+|.+|||.+| .+..+|+.+++|++|++|.+++|+ ++ .|.
T Consensus 504 m~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred hhhcceeccCCC-chhhCChhhccccceeEEEecCCc-cC-CCH
Confidence 899999999987 899999999999999999999999 55 553
No 32
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=9.1e-08 Score=79.66 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.++++|.|+.|+||||++++++++. . ....+++++............ + ..+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~--~-~~~~~~yi~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL--L-PPENILYINFDDPRDRRLADP-----------------D-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh--c-ccccceeeccCCHHHHHHhhh-----------------h-hHHHHHHhhcc
Confidence 4788899999999999999998732 2 224566776665422110000 0 22333333334
Q ss_pred CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHh-c-----CCCCeeecCCCChhhH
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKI-M-----GTLPAYQLKKLSYNDC 185 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~-~-----~~~~~~~l~~L~~~ea 185 (519)
++.+++||+++.. .+|......+....++.+|++|+........ . +....+++.||+..|-
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7789999999544 4676666666655567899999887655432 1 1224578899987763
No 33
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.61 E-value=5.7e-08 Score=83.04 Aligned_cols=124 Identities=17% Similarity=0.082 Sum_probs=67.7
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhcc
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTH 101 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 101 (519)
+||++++..+...+.. ...+.++|+|++|+|||++++.+++ .....-..+++++.............+...
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 71 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF---- 71 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh----
Confidence 3666666666554432 2456788999999999999999998 332222355666655433222111111000
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccc---hhhhccccCCC---CCCcEEEEEecch
Q 048774 102 QNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDD---WVDFSRPLGAS---AQGSKIIVSTRNH 163 (519)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~---~~~l~~~l~~~---~~~~~ilvTsr~~ 163 (519)
............++.++|+||++...... +......+... ..+..+|+|+...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 01111122234567899999997532212 22222222221 3577888888764
No 34
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=2.5e-07 Score=91.43 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=102.7
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|-+..++.|...... +.-++.++++|+.|+||||+|+.+++...-....... .++....-..+.....-.+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~--~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSL--GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred hccChHHHHHHHHHHHHc--CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCCCceE
Confidence 356888887777654442 2234566799999999999999988731100000000 00000000000000000000
Q ss_pred ccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCC
Q 048774 100 THQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLP 173 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~ 173 (519)
.-........++....+... ..++.-++|+|+++......+..+...+......+++|++|.+. .+...+ ....
T Consensus 92 ~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 92 EIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCL 171 (363)
T ss_pred EecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhce
Confidence 00000001222222111111 12345699999997766545555666665555567777776543 232222 2236
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
.+++.+++.++..+.+...+...+...+ ++.+..|++.++|.|..
T Consensus 172 ~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 172 QFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 7899999999999988876644332111 56678899999998853
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.59 E-value=2.7e-07 Score=89.81 Aligned_cols=178 Identities=12% Similarity=0.109 Sum_probs=98.5
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhh-cCCC-ceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFD-LKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
++|.++.+..|..... .+..+.+.++|++|+||||+|..+++ ... ..|. .++-++.+...+. +..+.++..+
T Consensus 15 ~~g~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 15 IVGNEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred hcCcHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccH-HHHHHHHHHH
Confidence 5677777777654333 22334567999999999999999887 322 2222 1111111111111 1222222211
Q ss_pred hccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCCeee
Q 048774 99 VTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLPAYQ 176 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~~~~ 176 (519)
..... . .-.++.-++|||+++.........+...+......+++++++... .+...+ .....++
T Consensus 89 ~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 89 AQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred Hhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 11100 0 001346699999997665444444544444444567777776542 111111 1125688
Q ss_pred cCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 177 LKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 177 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
+.+++.++....+...+...+.... ++....|++.++|....
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 9999999999888877654332222 56678888888887643
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=5.9e-08 Score=102.70 Aligned_cols=100 Identities=28% Similarity=0.426 Sum_probs=71.0
Q ss_pred CCchhhhhhccCCcccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHh
Q 048774 417 LAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAA 494 (519)
Q Consensus 417 ~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~ 494 (519)
+...+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.++ .+|..++++++|+.|+|++|...+.+|..
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 44556666777777777777777776 66777777777777777777777 67777777777777777777666677776
Q ss_pred hccc-ccCCEEEccCCCCCCCCC
Q 048774 495 MGNL-IKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 495 ~~~l-~~L~~l~l~~~~~l~~lP 516 (519)
++.+ .++..+++.+|..+...|
T Consensus 510 l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HhhccccCceEEecCCccccCCC
Confidence 6653 356677777776555444
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=9.5e-08 Score=101.18 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=82.1
Q ss_pred cccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEcc
Q 048774 430 RLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNS 507 (519)
Q Consensus 430 ~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~ 507 (519)
.+..|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998 78999999999999999999998 899999999999999999997777899999999999999999
Q ss_pred CCCCCCCCCCC
Q 048774 508 NTDSLEEMPVG 518 (519)
Q Consensus 508 ~~~~l~~lP~~ 518 (519)
+|...+.+|..
T Consensus 499 ~N~l~g~iP~~ 509 (623)
T PLN03150 499 GNSLSGRVPAA 509 (623)
T ss_pred CCcccccCChH
Confidence 99988889864
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.6e-07 Score=97.76 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=106.0
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
.++|-+.++..|...+.. +.-.+..+++|+.|+||||+|+.+++. +... .... .++.... -..+...
T Consensus 17 dIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~---pCg~C~s----C~~i~~g 85 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTAT---PCGVCSS----CVEIAQG 85 (944)
T ss_pred HhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCC---CCCCchH----HHHHhcC
Confidence 357888877777554432 112345579999999999999999873 2211 0000 0000000 0000000
Q ss_pred hh---c-cCCCCCCCHHHH---HHHHH-HHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHh
Q 048774 98 IV---T-HQNVDNLNLNKL---QEELN-KQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKI 168 (519)
Q Consensus 98 l~---~-~~~~~~~~~~~~---~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~ 168 (519)
.. . -........+.. .+.+. ....++.-++|||+++.........+...+......+++|++|.+. .+...
T Consensus 86 ~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 86 RFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 00 0 000001112222 21111 1123567799999998777666677777766655677777666553 23222
Q ss_pred -cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 169 -MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 169 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
......|++.+++.++....+.+.+....... .++.+..|++.++|.|.-+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDA 217 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 12236799999999999999888664322211 1567888999999988533
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=3.9e-08 Score=85.36 Aligned_cols=108 Identities=24% Similarity=0.333 Sum_probs=31.8
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcch
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESV 471 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~ 471 (519)
+...+..+++.|.+.++. ......+. .+.+|+.|++++|.++.++ .+..++.|+.|++++|.|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 333444455555555554 22233444 4667777777777777664 3666777777777777777665544
Q ss_pred h-cCCCCcEEeccCCCchhHhH--HhhcccccCCEEEccCCC
Q 048774 472 S-KLYNLHTLLLEDCRRLKKLC--AAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 472 ~-~l~~L~~l~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~ 510 (519)
. .+++|+.|++++| .+..+- ..+..+++|+.|++.+|+
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 3 4677777777766 443332 235566777777777776
No 40
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=8.3e-07 Score=82.01 Aligned_cols=150 Identities=14% Similarity=0.066 Sum_probs=86.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
....++|+|++|+|||.|+..+++ ...++...+.+++.... ...+. +.+ +.+
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~------~~~~~------------------~~~-~~l- 91 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAA------AGRLR------------------DAL-EAL- 91 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHh------hhhHH------------------HHH-HHH-
Confidence 345688999999999999999987 33333345566664321 11110 111 111
Q ss_pred CCeEEEEecCccccCc-cchh-hhccccCC-CCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHHHHH
Q 048774 122 GKKFLLVLDDVWNRNY-DDWV-DFSRPLGA-SAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~-~~~~-~l~~~l~~-~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 189 (519)
.+.-+|||||++.... ..+. .+...+.. ...+..+|+||+.. .+..++.....+++++++.++-.+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 1234899999964321 1111 22222221 12356699998842 22223333467899999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 190 AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.+++...+...+ ++...-|++.+.|-.-.+
T Consensus 172 ~~~a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 987654322122 566677777777655443
No 41
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.55 E-value=2e-06 Score=76.94 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
+.+-++|+||++.........+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 456789999997766555666666666555567777777653 222211 123578999999999999888761
Q ss_pred CCCchHHHHHHHHHHhhCCCch
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.. ++.+..|++.++|.|.
T Consensus 169 i~----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 IS----EEAAELLLALAGGSPG 186 (188)
T ss_pred CC----HHHHHHHHHHcCCCcc
Confidence 11 5678899999999885
No 42
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=4.1e-07 Score=93.45 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=104.7
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE---EcCCCCHHHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC---VSDDFDVIRLTKTILT 96 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~il~ 96 (519)
.++|.+...+.|...+.. +.-.+.++++|+.|+||||+|+.+++. +.... +.. ++... .-+.+..
T Consensus 16 dVIGQe~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~--LnC~~----~~~~~pCg~C~----sC~~I~~ 83 (702)
T PRK14960 16 ELVGQNHVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKC--LNCET----GVTSTPCEVCA----TCKAVNE 83 (702)
T ss_pred HhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCc----CCCCCCCccCH----HHHHHhc
Confidence 356888877777655442 222456679999999999999988772 21110 000 00000 0000000
Q ss_pred H----hhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HH-
Q 048774 97 S----IVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VA- 166 (519)
Q Consensus 97 ~----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~- 166 (519)
. +..-........++....+... ..++.-++|||+++..+......+...+.....+.++|++|.+.. +.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0 0000000111233322222111 235667999999987665555666666655555677887776532 21
Q ss_pred HhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 167 KIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 167 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
........+++.+++.++....+.+.+...+.... ++....|++.++|.+..
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRD 215 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 11223467899999999999988877654332222 56678899999987743
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.53 E-value=3.5e-08 Score=87.53 Aligned_cols=177 Identities=20% Similarity=0.107 Sum_probs=84.9
Q ss_pred cccccceeeeEeecCCCCCC--CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETM--PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+|-++++..+.-..... .+..-.-++++||+|+||||||.-+++ .....|. +.+...-....++ ..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~dl-~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGDL-AAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHHH-HHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHHH-HHHHH
Confidence 56889888777654322211 122345677999999999999999988 4444432 2222111111111 11222
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccC--------CCC-----------CCcEEE
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLG--------ASA-----------QGSKII 157 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~--------~~~-----------~~~~il 157 (519)
.+ + ++-+|.+|+++.......+.+..... ..+ +-+-|=
T Consensus 98 ~l----------------------~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 98 NL----------------------K-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp T-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred hc----------------------C-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11 1 23355556665433211111111110 001 123344
Q ss_pred EEecchhHHHhcCCCC--eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhh
Q 048774 158 VSTRNHEVAKIMGTLP--AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGG 228 (519)
Q Consensus 158 vTsr~~~~~~~~~~~~--~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 228 (519)
.|||...+........ ..+++.++.+|-.++..+.+..-.. .-.++.+.+|++++.|-|.--.-+-+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 6777654443333322 2479999999999999887644322 11267899999999999964443333
No 44
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=6.2e-08 Score=98.90 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=105.0
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT 100 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 100 (519)
++|-+..++.|...... +.-.+..+++|++|+||||+|+.+++.....+.+...+|.+.+.. .+......-+..+..
T Consensus 16 vvGq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~el~~ 92 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLEIDA 92 (504)
T ss_pred hcChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEEecc
Confidence 46777766666443332 112345579999999999999998873221122222333322110 000000000000000
Q ss_pred cCCCCCCCHHHHHHHHHHH-----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-CCCC
Q 048774 101 HQNVDNLNLNKLQEELNKQ-----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-GTLP 173 (519)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~~~~ 173 (519)
. .....+.... +... ..+++-++|||+++......+..+...+......+.+|+++.. ..+...+ ....
T Consensus 93 ~---~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 93 A---SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred c---ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0 1112222222 2222 2345669999999766655566676666655455565555543 3332222 2246
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.+++.+++.++....+.+.+...+.... ++.+..|++.++|.+.-+
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 7899999999999999887654432221 567888999999998544
No 45
>PRK09087 hypothetical protein; Validated
Probab=98.52 E-value=8.7e-07 Score=81.19 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=85.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+|++.+++.. ...+++.. .+...++. .+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~----------------------~~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN----------------------AAA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH----------------------hhh
Confidence 45678899999999999999888621 11233221 11111111 111
Q ss_pred CCeEEEEecCccccC--ccchhhhccccCCCCCCcEEEEEecc---------hhHHHhcCCCCeeecCCCChhhHHHHHH
Q 048774 122 GKKFLLVLDDVWNRN--YDDWVDFSRPLGASAQGSKIIVSTRN---------HEVAKIMGTLPAYQLKKLSYNDCLAIFA 190 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~--~~~~~~l~~~l~~~~~~~~ilvTsr~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~ 190 (519)
+ -++++||++... +..+..+...+. ..|..+|+|++. +.+..++.....+++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 278889996432 222222222222 236779999873 2344445555789999999999999999
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 191 QHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
+.+.......+ ++...-|++.+.|...++..+
T Consensus 164 ~~~~~~~~~l~----~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD----PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC----HHHHHHHHHHhhhhHHHHHHH
Confidence 88755332122 566777788777776665543
No 46
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=4.5e-07 Score=92.92 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=103.8
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHHHHHHHHHH
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
.+|-+..++.|...+.. +.-.+..+++|+.|+||||+|+.+.+. +... -.....-.++... .-+.|..
T Consensus 18 VIGQe~vv~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAka--LnC~~p~~~~g~~~~PCG~C~----sC~~I~a 89 (700)
T PRK12323 18 LVGQEHVVRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKS--LNCTGADGEGGITAQPCGQCR----ACTEIDA 89 (700)
T ss_pred HcCcHHHHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCccccccCCCCCCcccH----HHHHHHc
Confidence 46877777766654442 112345679999999999999988762 2110 0000000001000 0000000
Q ss_pred H----hhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHH
Q 048774 97 S----IVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAK 167 (519)
Q Consensus 97 ~----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~ 167 (519)
. +..-.......+++..+.+... ..++.-++|||+++..+......+...+.....++++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 0000000112233333332221 1355669999999877766666677766655556776666654 33322
Q ss_pred hc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 168 IM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 168 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
.+ .....+.+..++.++..+.+.+.+...+.... ++....|++.++|.|.-
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRD 221 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 21 12367899999999999988876543222111 45567899999999853
No 47
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=2.3e-07 Score=89.88 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=95.3
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
..|+||++++.+|...+.....+.+++++|+|++|+|||||++.+.... . + ..++++.. +..+++..++.++
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l--~--~-~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M-PAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC--C--c-eEEEECCC---CHHHHHHHHHHHc
Confidence 6799999999999887765455555677899999999999999998732 1 2 23333333 6799999999999
Q ss_pred hccCCCCCC-CHHHHHHHHHHHh-c-CCeEEEEecCccccCc-cchhhhccccCCCCCCcEEEEEecchhHHHh---cCC
Q 048774 99 VTHQNVDNL-NLNKLQEELNKQL-S-GKKFLLVLDDVWNRNY-DDWVDFSRPLGASAQGSKIIVSTRNHEVAKI---MGT 171 (519)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~~-~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~---~~~ 171 (519)
+.+...... -.+.+.+.+.+.- . +++.+||+-==+-.+. ..+.+. -.+-....-|+|++----+.+... .+.
T Consensus 334 GV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lpr 412 (550)
T PTZ00202 334 GVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPR 412 (550)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCcc
Confidence 974321111 1222333333322 2 5666666532111110 111111 112222234666654332222111 122
Q ss_pred CCeeecCCCChhhHHHHHHHh
Q 048774 172 LPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 172 ~~~~~l~~L~~~ea~~L~~~~ 192 (519)
-.-|.+.+++.++|..+-.+.
T Consensus 413 ldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 413 LDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ceeEecCCCCHHHHHHHHhhc
Confidence 245889999999998887664
No 48
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=7.5e-07 Score=87.09 Aligned_cols=177 Identities=13% Similarity=0.090 Sum_probs=100.5
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc-CCCceEEEEEc--CCCCHHHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN-HFDLKAWTCVS--DDFDVIRLTKTILT 96 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~--~~~~~~~~~~~il~ 96 (519)
.++|+++.++.+...... +..+.++|+|++|+||||+|+.+++ .... .+. ..++.+. ...... .....+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~-~~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAALALAR--ELYGEDWR-ENFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHH--HHcCCccc-cceEEeccccccchH-HHHHHHH
Confidence 367999988888765442 2334568999999999999999987 3221 121 1122221 111111 1111111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHh-cCCCCe
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKI-MGTLPA 174 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~-~~~~~~ 174 (519)
.+....+ .....+-++++|+++.........+...+......+++|+++.... +... ......
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1111110 0012356899999865543333445444444445677777764321 1111 112246
Q ss_pred eecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 175 YQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 175 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
+.+.+++.++....+...+...+.... ++.+..+++.++|.+.-
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 889999999998888887654332122 56788889999998765
No 49
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.47 E-value=1.2e-06 Score=80.95 Aligned_cols=153 Identities=15% Similarity=0.101 Sum_probs=88.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+||+.+++ .....-..+.+++..... ..+ ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~--~~~~~~~~~~~i~~~~~~------~~~-----------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVA--DASYGGRNARYLDAASPL------LAF-----------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEEehHHhH------HHH-----------------------hhc-
Confidence 456788999999999999999987 322221234455543311 000 011
Q ss_pred CCeEEEEecCccccCccchhhhccccCCC-CCCc-EEEEEecchhH--------HHhcCCCCeeecCCCChhhHHHHHHH
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGAS-AQGS-KIIVSTRNHEV--------AKIMGTLPAYQLKKLSYNDCLAIFAQ 191 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~~~-~ilvTsr~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~ 191 (519)
...-++|+||++..+......+...+... ..+. .+++|++.... ...+.....+++.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 22347899999654332322333333211 1233 36666664321 11222235789999999887777776
Q ss_pred hhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhc
Q 048774 192 HSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLL 230 (519)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 230 (519)
.+...+. ..+ ++....+++.+.|++..+..+...+
T Consensus 169 ~~~~~~v-~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERGL-QLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5433222 222 5677888888999998877665544
No 50
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.47 E-value=2.2e-06 Score=79.38 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.+.++|+|++|+|||+|+..+++ .....-..+.++++..... . ..+..+. +..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~---~------------------~~~~~~~----~~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW---F------------------VPEVLEG----MEQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh---h------------------hHHHHHH----hhh
Confidence 35778999999999999999887 3333333455665543100 0 0111111 111
Q ss_pred CeEEEEecCccccCc-cchhh-hccccCCC--CCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHHHHH
Q 048774 123 KKFLLVLDDVWNRNY-DDWVD-FSRPLGAS--AQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~-~~~~~-l~~~l~~~--~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 189 (519)
--+++|||++.... ..|+. +...+... ..+.++|+||+.. .+..++.....+.+++++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 13789999964321 12221 21222111 1234789998753 22333444468899999999999988
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 190 AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
.+++...+. ..+ ++...-|++.+.|..-.+..+
T Consensus 177 ~~~a~~~~~-~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 177 QLRARLRGF-ELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 876644322 222 566777888887766554433
No 51
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.46 E-value=4.6e-07 Score=96.17 Aligned_cols=169 Identities=21% Similarity=0.216 Sum_probs=92.5
Q ss_pred cccccceeeeEe---ecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHH
Q 048774 19 DVFPCRKQAFIW---AASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTIL 95 (519)
Q Consensus 19 ~~f~gR~~~~~~---l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 95 (519)
+.|+|++.++.. |..... .+..+.++|+|++|+||||+|+.+++ .....|. .++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~---~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIK---ADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHh---cCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH-------
Confidence 347888887742 322222 22345668999999999999999997 4444441 111100 0000
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHh--cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec--chh--HHHh-
Q 048774 96 TSIVTHQNVDNLNLNKLQEELNKQL--SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR--NHE--VAKI- 168 (519)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr--~~~--~~~~- 168 (519)
+...........+ .+++.++|||+++.........+...+. .+..++++++ +.. +...
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh
Confidence 1111111221111 2456799999997655434444443333 2455555433 321 1111
Q ss_pred cCCCCeeecCCCChhhHHHHHHHhhhC------CCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 169 MGTLPAYQLKKLSYNDCLAIFAQHSLG------TRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 169 ~~~~~~~~l~~L~~~ea~~L~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
......+.+++++.++...++.+.+.. .....- .++....|++.+.|...
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R 212 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDAR 212 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHH
Confidence 112357899999999999999876641 111111 15667778888888754
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.4e-07 Score=90.53 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=103.2
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT 100 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 100 (519)
++|-+..+..|...+.. +.-.+..+++|+.|+||||+|+.+++. +...-.. -...++...+-..+.......+..
T Consensus 20 vVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~-~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 20 VIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKR--LNCENPI-GNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred HhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHh--cCccccc-CccccCCCcHHHHHHccCCcccee
Confidence 46777766666544332 112345679999999999999999873 2211000 001111111111111111000000
Q ss_pred cCCCCCCCHHHHH---HHHHH-HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-CCCCe
Q 048774 101 HQNVDNLNLNKLQ---EELNK-QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-GTLPA 174 (519)
Q Consensus 101 ~~~~~~~~~~~~~---~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~~~~~ 174 (519)
-........+... +.+.. ...++.-++|||+++......+..+...+........+|++|.. ..+...+ .....
T Consensus 95 Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 95 IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhe
Confidence 0000111222222 22221 12356679999999877766677776666554445555555543 3332222 22357
Q ss_pred eecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 175 YQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 175 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
|.+.+++.++..+.+.+.+...+.... ++....|++.++|.+.
T Consensus 175 ~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 175 FIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVR 217 (484)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHH
Confidence 999999999998888887654332111 5678889999999884
No 53
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.1e-06 Score=90.06 Aligned_cols=179 Identities=18% Similarity=0.143 Sum_probs=104.0
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc---------------------CCCceEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN---------------------HFDLKAWT 79 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~~~wv 79 (519)
++|-+..++.|...+.. +.-.+..+++|+.|+||||+|+.+++ .+.. .|...+++
T Consensus 18 iiGq~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk--~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 18 VAGQQHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAK--CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 56888877776655442 12234567999999999999999886 2211 11122222
Q ss_pred EEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH-HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEE
Q 048774 80 CVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK-QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIV 158 (519)
Q Consensus 80 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv 158 (519)
+......+. +...+.+.+.. ...+++-++|+|+++..+......+...+......+.+|+
T Consensus 94 daas~~gvd-------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 94 DAASRTGVE-------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred ecccccCHH-------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 221111111 11112222111 1235667999999987666566667666666555666665
Q ss_pred Eecch-hHHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHH
Q 048774 159 STRNH-EVAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTL 226 (519)
Q Consensus 159 Tsr~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 226 (519)
+|.+. .+... ......+++.+++.++....+.+.+...+.... ++....|++.++|.+. |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e----~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD----EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 55443 33222 222367899999999988888776543322111 5667788999998664 44444
No 54
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.45 E-value=1.8e-08 Score=95.00 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=38.9
Q ss_pred cCCcccEEeecCccccccCcccc-CCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEE
Q 048774 427 KLQRLRIFSLRGYHISELPDSVG-DLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLN 505 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~ 505 (519)
.+..|..|.++.|.++-+|...+ .+.+|..||++.|++++.|..++.+.+|..||+++| .+..+|..++++ .|+.|.
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehh
Confidence 33333333333333333333322 445555555555555555555555555555555544 444455455555 555555
Q ss_pred ccCCC
Q 048774 506 NSNTD 510 (519)
Q Consensus 506 l~~~~ 510 (519)
+.||+
T Consensus 304 leGNP 308 (565)
T KOG0472|consen 304 LEGNP 308 (565)
T ss_pred hcCCc
Confidence 55554
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.8e-06 Score=83.90 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=104.6
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCCh----hhhcCCCceEEEE-EcCCCCHHHHHHHHHH
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDD----RVQNHFDLKAWTC-VSDDFDVIRLTKTILT 96 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~----~~~~~f~~~~wv~-~~~~~~~~~~~~~il~ 96 (519)
+|-++.++.|...+. .+.-++...++|+.|+|||++|..+++.. ....|.+...|.. .+....+.+ .+++..
T Consensus 7 ~g~~~~~~~l~~~~~--~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 7 IGHENIKNRIKNSII--KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred cCcHHHHHHHHHHHH--cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 465555555544333 12234566799999999999999888621 1123444444433 122222222 222222
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HHhc-CCCCe
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AKIM-GTLPA 174 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~~-~~~~~ 174 (519)
.+.... ..+++-++|+|+++..+...+..+...+....+++.+|++|.+.+. .+.+ .....
T Consensus 84 ~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 84 EVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 222111 1245668888888776666777788888777778888888865432 1211 12367
Q ss_pred eecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 175 YQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 175 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
+.+.+++.++....+...... .+ ++.+..++..++|.|.-.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHH
Confidence 889999999998888764311 11 455778899999988644
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=4e-07 Score=84.21 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC--CCHHHHHHHHHHHhhccCCCCCCCHH------HH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD--FDVIRLTKTILTSIVTHQNVDNLNLN------KL 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~------~~ 112 (519)
+....++|.|++|+|||||++.++++.... +|+..+|+.+... .+..++++.+...+....... .... ..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHHH
Confidence 356788899999999999999999854333 7899999886555 688888888844333332211 1111 11
Q ss_pred HHHHHHH-hcCCeEEEEecCcc
Q 048774 113 QEELNKQ-LSGKKFLLVLDDVW 133 (519)
Q Consensus 113 ~~~l~~~-l~~~~~LlvlDdv~ 133 (519)
....... -.++++++++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 2222222 24789999999994
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=8.7e-07 Score=91.89 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=102.8
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|.+..++.|...+.. +.-.+.++++|+.|+||||+|+.+.+. +...- ..-+..++....-..+...-.-.+.
T Consensus 17 dIIGQe~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~--LnC~~-~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 17 DLVGQEHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKS--LNCEN-AQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHH--hcccC-CCCCCCCcccHHHHHHhccCccceE
Confidence 357888888877665442 222456679999999999999988772 21110 0000111110000000000000000
Q ss_pred ccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHh-cCCCC
Q 048774 100 THQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKI-MGTLP 173 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~-~~~~~ 173 (519)
.-........+.+...+... ..+++-++|||+++..+......+...+......+++|++|.+.. +... .....
T Consensus 92 EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~ 171 (709)
T PRK08691 92 EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171 (709)
T ss_pred EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHh
Confidence 00000111222222222211 234567999999976554444455555554445677777775432 2111 12225
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
.+.+..++.++....+.+.+...+.... ++.+..|++.++|.+.-
T Consensus 172 ~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 172 QFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRD 216 (709)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHH
Confidence 6788899999999999877654332111 56778899999998843
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.41 E-value=2.5e-06 Score=84.72 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=102.1
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc----------------------CCCceE
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN----------------------HFDLKA 77 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~----------------------~f~~~~ 77 (519)
..+|.++.++.|...+.. +.-++..+++|++|+|||++|+.+.+. +.. +++ ++
T Consensus 15 ~iig~~~~~~~l~~~~~~--~~~~~~~Ll~G~~G~GKt~~a~~la~~--l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~ 89 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKN--GRIAHAYLFSGPRGTGKTSIARIFAKA--LNCQNGPDGEPCNECESCKEINSGSSLD-VI 89 (355)
T ss_pred hccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhcCCCCC-EE
Confidence 357999988887665442 223456679999999999999888762 211 111 12
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEE
Q 048774 78 WTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKII 157 (519)
Q Consensus 78 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (519)
+++........ ..+.++..+... -..+++-++|+|+++.........+...+......+.+|
T Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~~~-----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 90 EIDAASNNGVD-DIREILDNVKYA-----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EeeccccCCHH-HHHHHHHHHhcC-----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 22211111111 111121111110 012345588999986554444455555555444566666
Q ss_pred EEecchh-HHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 158 VSTRNHE-VAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 158 vTsr~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
++|.+.. +...+ .....+++.+++.++..+++...+...+...+ ++.+..+++.++|.|..+..
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALS 217 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHH
Confidence 6665443 22222 12356888999999998888877654332111 56788899999998865443
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=7.2e-07 Score=91.78 Aligned_cols=177 Identities=16% Similarity=0.110 Sum_probs=100.5
Q ss_pred cccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 21 FPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
++|+++.++.|...+.... +...+.++|+|++|+||||+|+.++++ . .|+ ++-++.+.... ......++....
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l--~~~-~ielnasd~r~-~~~i~~~i~~~~ 89 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--Y--GWE-VIELNASDQRT-ADVIERVAGEAA 89 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEccccccc-HHHHHHHHHHhh
Confidence 6788877776665443222 223677889999999999999999883 2 122 22233332221 122222222221
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCc----cchhhhccccCCCCCCcEEEEEecchh-HHH--hcCCC
Q 048774 100 THQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY----DDWVDFSRPLGASAQGSKIIVSTRNHE-VAK--IMGTL 172 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~--~~~~~ 172 (519)
.... ....++.+||||+++.... .....+...+.. .+..||+|+.+.. ... .-...
T Consensus 90 ~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 90 TSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred ccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccc
Confidence 1110 0113577999999975432 223344444432 2445666665431 111 11223
Q ss_pred CeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 173 PAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 173 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
..+.+.+++..+....+...+...+...+ ++....|++.++|....+.
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 56889999999998888877654333222 5678889999988775543
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=5.6e-06 Score=84.40 Aligned_cols=193 Identities=14% Similarity=0.172 Sum_probs=104.5
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC-ceEEEEEcCCCCHHHHHHH---HHH
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD-LKAWTCVSDDFDVIRLTKT---ILT 96 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~---il~ 96 (519)
.+|-+..+..|...... +.-.+..+++|+.|+||||+|+.+++...-..... ..-+..++...+-..+... -+.
T Consensus 23 liGq~~vv~~L~~ai~~--~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 23 LQGQEVLVKVLSYTILN--DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 36777777766543331 11235677999999999999999987321111000 0000011111000000000 000
Q ss_pred HhhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEe-cchhHHHhcC-
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVST-RNHEVAKIMG- 170 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTs-r~~~~~~~~~- 170 (519)
.+... .....++....+... ..+++-++|+|+++..+...+..+...+....+.+.+|++| +...+...+.
T Consensus 101 eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S 177 (507)
T PRK06645 101 EIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177 (507)
T ss_pred Eeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh
Confidence 00000 112233333322211 23566789999998766666667776666655566666544 4434433222
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
....+++.+++.++....+.+.+...+.... ++.+..|++.++|.+.-
T Consensus 178 Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 178 RCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARD 225 (507)
T ss_pred cceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 2357899999999999999888754432212 46677899999997743
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=4.4e-06 Score=84.63 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=100.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
....++|+|..|+|||+|++++++ .+.... ..+++++. .++...+...+.... .....+++.
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~--------~~~~~~~~~ 203 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSG------DEFARKAVDILQKTH--------KEIEQFKNE 203 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh--------hHHHHHHHH
Confidence 445688999999999999999987 333222 23334333 345555555543311 112233333
Q ss_pred hcCCeEEEEecCccccC--ccchhhhccccCCC-CCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHHH
Q 048774 120 LSGKKFLLVLDDVWNRN--YDDWVDFSRPLGAS-AQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCLA 187 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~--~~~~~~l~~~l~~~-~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 187 (519)
++. .-+|||||++... ....+.+...+... ..+..||+||... .+..++...-.+.+++++.++...
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 443 3478889996432 11122232222211 2355788887642 122223334567899999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhc
Q 048774 188 IFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLL 230 (519)
Q Consensus 188 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 230 (519)
++.+++...+... .--++...-|++.+.|.|..+.-+...+
T Consensus 283 iL~~~~~~~gl~~--~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIKQ--EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCCC--CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9998875432100 1126778889999999998877665433
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.7e-06 Score=87.78 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=100.4
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--C-----------------CceEEEE
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--F-----------------DLKAWTC 80 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f-----------------~~~~wv~ 80 (519)
.++|.+...+.|...+.. +.-++..+++|++|+||||+|+.+++...-... + ..+..++
T Consensus 15 divGq~~i~~~L~~~i~~--~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 15 EVVGQDHVKKLIINALKK--NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 367877776666554331 112344679999999999999998763111000 0 0111111
Q ss_pred EcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH-----hcCCeEEEEecCccccCccchhhhccccCCCCCCcE
Q 048774 81 VSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ-----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSK 155 (519)
Q Consensus 81 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ 155 (519)
.... ...+... .+.+. ..+++-++|+|+++.........+...+......+.
T Consensus 93 aa~~----------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 93 AASN----------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred Cccc----------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 1111 1122222 12211 224566999999976544444555555554434455
Q ss_pred EEEEecc-hhHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCC-CchhHHHHhhh
Q 048774 156 IIVSTRN-HEVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDG-LPLAAQTLGGL 229 (519)
Q Consensus 156 ilvTsr~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~~~~ 229 (519)
++++|.+ ..+...+ .....+.+.+++.++....+.+.+...+...+ ++....|++.++| .+.++..+-..
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444443 3333222 23467889999999999988887654332122 5667778887764 46666666543
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.2e-06 Score=91.32 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=105.4
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh-
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI- 98 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l- 98 (519)
.++|-+..++.|...+.. +.-.+..+++|+.|+||||+|+.+++. +..... ...-.++.. ...+.+...-
T Consensus 17 divGQe~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~-~~~~pCg~C----~~C~~i~~g~~ 87 (647)
T PRK07994 17 EVVGQEHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKG--LNCETG-ITATPCGEC----DNCREIEQGRF 87 (647)
T ss_pred HhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHh--hhhccC-CCCCCCCCC----HHHHHHHcCCC
Confidence 357888887777655542 112344679999999999999998873 221100 000011111 1111111000
Q ss_pred ---hccCCCCCCCHHHHHHHHHH----HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHh-c
Q 048774 99 ---VTHQNVDNLNLNKLQEELNK----QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKI-M 169 (519)
Q Consensus 99 ---~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~-~ 169 (519)
..-........++....+.. -..++.-++|||+++..+......+...+......+++|++|.+. .+... .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 00000001123332222211 124566799999998777666666666666655567666666553 33222 1
Q ss_pred CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 170 GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 170 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
.....+.+.+++.++....+.+.+........ ++....|++.++|.+.-
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRD 216 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 22467999999999999998876533222111 45677899999998863
No 64
>PRK05642 DNA replication initiation factor; Validated
Probab=98.38 E-value=4.3e-06 Score=77.28 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++|+|++|+|||.|++.+++ .....-..++|++... +... .. .+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 46778999999999999999987 3333334566666532 1110 01 12222332
Q ss_pred CeEEEEecCccccC-ccchhh-hccccCC-CCCCcEEEEEecchhH---------HHhcCCCCeeecCCCChhhHHHHHH
Q 048774 123 KKFLLVLDDVWNRN-YDDWVD-FSRPLGA-SAQGSKIIVSTRNHEV---------AKIMGTLPAYQLKKLSYNDCLAIFA 190 (519)
Q Consensus 123 ~~~LlvlDdv~~~~-~~~~~~-l~~~l~~-~~~~~~ilvTsr~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~ 190 (519)
-. ++|+||++... ...|.+ +...+.. ...|..+|+||+...- ..++.....+.+++++.++-..++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 23 67889995321 112222 2222221 1236779998874321 2222233568899999999999988
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 191 QHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
.++..... ..+ ++...-|++.+.|-...+..+
T Consensus 177 ~ka~~~~~-~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 177 LRASRRGL-HLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 66544321 111 566677777777765554443
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.4e-06 Score=88.76 Aligned_cols=194 Identities=14% Similarity=0.143 Sum_probs=104.4
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
.++|-+..+..|...+.. +.-.+...++|+.|+||||+|+.+.+...-... ..+.-.-.++.. ..-+.+...
T Consensus 17 dviGQe~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~g 90 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDSG 90 (618)
T ss_pred HhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHcC
Confidence 457878777777655442 122345679999999999999988652110000 000000011111 001111000
Q ss_pred ----hhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHh
Q 048774 98 ----IVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKI 168 (519)
Q Consensus 98 ----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~ 168 (519)
+..-........++....+... ..++.-++|||+++..+......+...+......+++|++|.+ ..+...
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000000112233333222211 1234558999999877766666677666655556667666544 333222
Q ss_pred -cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 169 -MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 169 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
......++++.++.++....+.+.+...+...+ ++.+..|++.++|.+.-+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 223467899999999999988877644332222 466788889999877443
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.6e-06 Score=86.04 Aligned_cols=175 Identities=15% Similarity=0.114 Sum_probs=103.1
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc---------------------CCCceEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN---------------------HFDLKAWT 79 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~~~wv 79 (519)
++|-+..++.|...... +.-++...++|+.|+||||+|+.+++ .+.. .+.-++.+
T Consensus 15 liGQe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk--~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 15 LVGQDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISL--CLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHH--HHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 46777777666543331 12234677999999999999988875 2111 11122233
Q ss_pred EEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEE
Q 048774 80 CVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVS 159 (519)
Q Consensus 80 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT 159 (519)
+.....++.+ .+.++...... -..++.-++|+|+++..+......+...+....+.+++|++
T Consensus 91 daas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3322222221 11111111100 01245668999999776655566677777666567777766
Q ss_pred ecc-hhHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 160 TRN-HEVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 160 sr~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
|.. ..+...+ .....+++.+++.++....+.+.+...+...+ ++.+..|++.++|.+.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMR 212 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 644 3333222 22467899999999999998887654432222 5667789999998875
No 67
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.35 E-value=6.2e-06 Score=75.30 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=90.7
Q ss_pred CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC--ceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 048774 40 EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD--LKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN 117 (519)
Q Consensus 40 ~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 117 (519)
+.....++|+|+.|+|||.|.+++++ .+.+..+ .+++++. .+....+...+... ..+ .++
T Consensus 31 ~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~------~~~----~~~ 92 (219)
T PF00308_consen 31 GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFADALRDG------EIE----EFK 92 (219)
T ss_dssp TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT------SHH----HHH
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHHHHHHcc------cch----hhh
Confidence 33445678999999999999999998 5444332 3445443 33444444444331 112 223
Q ss_pred HHhcCCeEEEEecCccccCc-----cchhhhccccCCCCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChh
Q 048774 118 KQLSGKKFLLVLDDVWNRNY-----DDWVDFSRPLGASAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYN 183 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~~~~~-----~~~~~l~~~l~~~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ 183 (519)
..+.+ -=+|+|||++.... ..+..+...+.. .|.++|+||+.. .+..++.....+++++.+.+
T Consensus 93 ~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 93 DRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred hhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 33332 33789999965332 122222222222 367899999643 22233334467899999999
Q ss_pred hHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 184 DCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 184 ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
+..+++.+.+......-+ ++.+.-+++.+.+..-.|..+
T Consensus 170 ~r~~il~~~a~~~~~~l~----~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELP----EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCc----HHHHHHHHHhhcCCHHHHHHH
Confidence 999999988765443222 566677777776665555443
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=3.4e-06 Score=83.55 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=61.0
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
+++-++|||+++.........+...+....+++.+|++|.+. .+...+ .....+.+.+++.++..+.+.....
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----
Confidence 345588889998766555455655565555567677666653 333232 2246789999999999888874321
Q ss_pred CCCchHHHHHHHHHHhhCCCchh
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
. + ++.+..+++.++|.|..
T Consensus 191 ~-~---~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 191 V-D---PETARRAARASQGHIGR 209 (394)
T ss_pred C-C---HHHHHHHHHHcCCCHHH
Confidence 1 1 45678899999999853
No 69
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2.2e-06 Score=88.41 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=101.5
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC---------------------CCceEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH---------------------FDLKAWT 79 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~---------------------f~~~~wv 79 (519)
++|-+..++.|...+.. +.-.+..+++|+.|+||||+|+.+.+. +... |.-++++
T Consensus 18 ivGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 18 LVGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKS--LNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 46888877777554432 112345679999999999999988762 2111 1111122
Q ss_pred EEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcE
Q 048774 80 CVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSK 155 (519)
Q Consensus 80 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ 155 (519)
+... ....++....+... ..+++-++|+|+++..+......+...+......+.
T Consensus 94 ~~~~----------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 94 DAAS----------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eccc----------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1111 11222222222111 135567999999977665555556666665555676
Q ss_pred EEEEecchh-HHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHH
Q 048774 156 IIVSTRNHE-VAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTL 226 (519)
Q Consensus 156 ilvTsr~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 226 (519)
+|++|.+.. +... ......+++..++.++....+.+.+...+.... ++.+..|++.++|.+. |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 776665432 2211 111256889999999999888776543322111 4567889999999775 44444
No 70
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.34 E-value=1.1e-06 Score=100.18 Aligned_cols=96 Identities=30% Similarity=0.451 Sum_probs=77.6
Q ss_pred hhhhhhccCCcccEEeecCcc-ccccCccccCCCcCcEEeccCCC-CcccCcchhcCCCCcEEeccCCCchhHhHHhhcc
Q 048774 420 SILTELFKLQRLRIFSLRGYH-ISELPDSVGDLRYLRHLNLSRTE-IKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGN 497 (519)
Q Consensus 420 ~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~l~l~~~~-i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~ 497 (519)
..+..+..+++|+.|+++++. +..+| .++.+++|+.|++++|. +..+|.+++.+++|+.|++++|..+..+|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 345566688999999998764 55666 47888999999998765 55889999999999999999988888888765 7
Q ss_pred cccCCEEEccCCCCCCCCCC
Q 048774 498 LIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 498 l~~L~~l~l~~~~~l~~lP~ 517 (519)
+++|+.|++++|..++.+|.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc
Confidence 88899999998877777764
No 71
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.34 E-value=3.3e-06 Score=78.73 Aligned_cols=210 Identities=16% Similarity=0.148 Sum_probs=121.1
Q ss_pred hhhhhhcccccccccee---eeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------CceEEEE
Q 048774 10 SDALEAAAHDVFPCRKQ---AFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------DLKAWTC 80 (519)
Q Consensus 10 ~~~l~~~~~~~f~gR~~---~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~ 80 (519)
.+.+.....+.|+|=.+ +++.|.+.+..-+....+...|+|.+|.|||++++++.+. ....+ -.++.+.
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEe
Confidence 34455556677877433 4444444444333445567779999999999999998863 11111 2567778
Q ss_pred EcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC-CeEEEEecCcccc------CccchhhhccccCCCCCC
Q 048774 81 VSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG-KKFLLVLDDVWNR------NYDDWVDFSRPLGASAQG 153 (519)
Q Consensus 81 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~------~~~~~~~l~~~l~~~~~~ 153 (519)
....++...++..|+.+++.+.. ...........+...++. +.-+||||++++. .+........++...-.-
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 88888999999999999999876 344555555555555554 3449999999652 122222223333322233
Q ss_pred cEEEEEecchhHHHh-----cCCCCeeecCCCC-hhhHHHHHHHhhhC--CCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 154 SKIIVSTRNHEVAKI-----MGTLPAYQLKKLS-YNDCLAIFAQHSLG--TRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 154 ~~ilvTsr~~~~~~~-----~~~~~~~~l~~L~-~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
+-|.+.|++..-+-. ..-...+.+..-. .+|...|+...... -+. ...-..++.++.|+..++|+.=-+
T Consensus 182 piV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 445566654322111 0112344554444 33455565433211 111 111223778999999999976433
No 72
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.33 E-value=5.4e-08 Score=96.11 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=52.7
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-ccc------------------------
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVG------------------------ 449 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~------------------------ 449 (519)
+.++.+|+.|.+..+. +....++.+...++|+.|++++|.++.+++ ++.
T Consensus 289 lfgLt~L~~L~lS~Na------I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNA------IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred ccccchhhhhccchhh------hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 3444445444444333 334445555556666666666666665543 333
Q ss_pred CCCcCcEEeccCCCCc-cc---CcchhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCC
Q 048774 450 DLRYLRHLNLSRTEIK-TL---PESVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~-~l---p~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~ 510 (519)
.+.+|+.|+|++|.+. .+ ...+..|++|+.|.+.|| .++.+|. .|..+..|++|||.+|.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 3444444444444433 11 112334555555555554 4444443 35555555555555554
No 73
>PF14516 AAA_35: AAA-like domain
Probab=98.33 E-value=4.6e-05 Score=74.31 Aligned_cols=200 Identities=16% Similarity=0.062 Sum_probs=112.8
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-----CCHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-----FDVIRLTKTI 94 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i 94 (519)
..|.|..+-+.+...+. .+...+.|.|+..+|||+|..++.+ ..+..=..++++++..- .+....++.+
T Consensus 12 ~Yi~R~~~e~~~~~~i~----~~G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIV----QPGSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred cccCchHHHHHHHHHHh----cCCCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 34677733333332222 1356788999999999999999887 33332234567776642 2455555555
Q ss_pred HHHhhccCCCC----------CCCHHHHHHHHHHHh---cCCeEEEEecCccccCc--cchhhhccccC----CC-----
Q 048774 95 LTSIVTHQNVD----------NLNLNKLQEELNKQL---SGKKFLLVLDDVWNRNY--DDWVDFSRPLG----AS----- 150 (519)
Q Consensus 95 l~~l~~~~~~~----------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~--~~~~~l~~~l~----~~----- 150 (519)
...+......+ ..........+.+.+ .+++++|+||+++..-. ....++...++ ..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 55544433211 112222233333332 26899999999964221 11112221111 10
Q ss_pred CCCcE-EEEEecchhHHHh-----cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 151 AQGSK-IIVSTRNHEVAKI-----MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 151 ~~~~~-ilvTsr~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
...-+ |++.+........ .+....++|.+++.+|...|+..+-..-. .+..++|...++|||..+.
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCCHHHHH
Confidence 01111 2233322211111 11225688999999999999988643211 3448899999999999999
Q ss_pred HHhhhccCC
Q 048774 225 TLGGLLRGE 233 (519)
Q Consensus 225 ~~~~~l~~~ 233 (519)
.++..+..+
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999764
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=3e-06 Score=86.95 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=101.2
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc-------------------CCCceEEEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN-------------------HFDLKAWTCV 81 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~ 81 (519)
.||-+..++.|...+.. +.-++..+++|+.|+||||+|+.+++...-.. .|.-++.++.
T Consensus 18 ivGq~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 18 VIGQAPVVRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred hcCCHHHHHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 46888777777655542 12244567999999999999988877211000 1111222222
Q ss_pred cCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH----HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEE
Q 048774 82 SDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK----QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKII 157 (519)
Q Consensus 82 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (519)
... ...++....+.. ...++.-++|||+++..+......+...+....+.+++|
T Consensus 96 as~----------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 96 ASR----------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred ccc----------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 111 222222222211 113455689999998766556666666666555677777
Q ss_pred EEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 158 VSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 158 vTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
++|.+. .+...+ .....+++.+++.++....+.+.+...+.... ++....|++.++|.+.-
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRD 216 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHH
Confidence 766553 222111 12356889999999888877766544332111 45677888999998743
No 75
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=6.8e-06 Score=80.71 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=106.4
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceE----EEEEcCCCCHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKA----WTCVSDDFDVIRLTKTI 94 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~----wv~~~~~~~~~~~~~~i 94 (519)
+..+|.++..+.|...... +.-++...++|+.|+||+++|..+.+..--........ -.+..... .-..-+.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~-~c~~c~~i 95 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDP-DHPVARRI 95 (365)
T ss_pred hhccChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCC-CChHHHHH
Confidence 3457988888888665442 22244567999999999999988776211001000000 00000000 00011111
Q ss_pred HHHhhccC---------C-----CCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcE
Q 048774 95 LTSIVTHQ---------N-----VDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSK 155 (519)
Q Consensus 95 l~~l~~~~---------~-----~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ 155 (519)
. .-..+. . .....+++. +.+.+.+ .+.+.++|||+++..+......+...+.....++.
T Consensus 96 ~-~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 96 A-AGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred H-ccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 1 000000 0 011123332 2333333 24567999999988776666666666665555666
Q ss_pred EEEEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 156 IIVSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 156 ilvTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
+|++|.+. .+...+ .....+.+.+++.++..+++...... .. .+....+++.++|.|+....
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 77766654 333222 23467899999999999999875311 11 22236789999999975433
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=3.3e-06 Score=82.46 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=107.6
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVIRLTKTI 94 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i 94 (519)
+..+|.++..+.|...... +.-++..+|+|+.|+||||+|..+.+. +..+ +.... ...........+.+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~--grl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE--GKLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred hhccCcHHHHHHHHHHHHc--CCCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 3457999988888776552 223446779999999999999988762 2221 11110 00000011122222
Q ss_pred HHH-------hhccCC------CCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEE
Q 048774 95 LTS-------IVTHQN------VDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKI 156 (519)
Q Consensus 95 l~~-------l~~~~~------~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~i 156 (519)
... +..+.. ...-.+++.. .+.+.+ .++.-++|||+++..+......+...+.....++.+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 211 111100 0112234433 333333 345679999999877665555666666554445555
Q ss_pred EEEe-cchhHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 157 IVST-RNHEVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 157 lvTs-r~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
|++| +...+...+ .....+.+.+++.++..+++........ -.++.+..+++.++|.|...
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~A 237 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKA 237 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHH
Confidence 5544 433332222 1236899999999999999987432111 11455778999999999744
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=5.2e-06 Score=85.30 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=103.7
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|++.+++.|...... +..++..+++|+.|+||||+|+.+++ .+... -|...... ..-...+.+.....
T Consensus 17 dIIGQe~iv~~L~~aI~~--~rl~hA~Lf~GP~GvGKTTlA~~lAk--~L~C~----~~~~~~~C-g~C~sCr~i~~~~h 87 (605)
T PRK05896 17 QIIGQELIKKILVNAILN--NKLTHAYIFSGPRGIGKTSIAKIFAK--AINCL----NPKDGDCC-NSCSVCESINTNQS 87 (605)
T ss_pred HhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHH--HhcCC----CCCCCCCC-cccHHHHHHHcCCC
Confidence 357999998888765432 22345677999999999999999876 22110 01110000 00001111110000
Q ss_pred c----cCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec-chhHHHh-c
Q 048774 100 T----HQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR-NHEVAKI-M 169 (519)
Q Consensus 100 ~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr-~~~~~~~-~ 169 (519)
. -........++....+... ..+++-++|+|+++..+......+...+......+.+|++|. ...+... .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 0 0000111222222221111 122344799999976655555556666554444565555543 3333322 2
Q ss_pred CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHHhh
Q 048774 170 GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTLGG 228 (519)
Q Consensus 170 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 228 (519)
.....+++.+++.++....+...+...+...+ ++.+..+++.++|.+. |+..+-.
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22357899999999999888876644322111 5667889999999664 4444443
No 78
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.25 E-value=1.5e-07 Score=93.01 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=87.0
Q ss_pred CeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCc
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRY 453 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~ 453 (519)
.++.+.+-+++..+... ..++.|.+++.|.+..+. +..-.-..++.+..|+.|++++|.|+.+ +.+++.-+.
T Consensus 246 Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N~------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETNR------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhhhcCcccccC-cceeeecccceeecccch------hhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 34444444444444433 455677777777666554 2122223456899999999999999955 677788889
Q ss_pred CcEEeccCCCCcccCcc-hhc------------------------CCCCcEEeccCCCchh---HhHHhhcccccCCEEE
Q 048774 454 LRHLNLSRTEIKTLPES-VSK------------------------LYNLHTLLLEDCRRLK---KLCAAMGNLIKLHHLN 505 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~-~~~------------------------l~~L~~l~l~~~~~~~---~lp~~~~~l~~L~~l~ 505 (519)
|++|+|++|.|++++++ +.- +.+|+.|||++|..-+ +-...|..|++|+.|+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 99999999999988763 333 4555555555553211 1122356677777777
Q ss_pred ccCCCCCCCCCC
Q 048774 506 NSNTDSLEEMPV 517 (519)
Q Consensus 506 l~~~~~l~~lP~ 517 (519)
+.+|+ +++||+
T Consensus 399 l~gNq-lk~I~k 409 (873)
T KOG4194|consen 399 LTGNQ-LKSIPK 409 (873)
T ss_pred ecCce-eeecch
Confidence 77777 777765
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=2.5e-06 Score=82.39 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC--CHHHHHHHHHHHhhccCCCCCCCHHH-----
Q 048774 39 PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF--DVIRLTKTILTSIVTHQNVDNLNLNK----- 111 (519)
Q Consensus 39 ~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~----- 111 (519)
|-+..+...|+|++|+||||||+++++..... +|+..+|+.+.... ++.++++.+...+..... +......
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~ 242 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAE 242 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHH
Confidence 34456777899999999999999999853333 89999999877665 667777777643333322 1111111
Q ss_pred -HHHHHHHH-hcCCeEEEEecCcc
Q 048774 112 -LQEELNKQ-LSGKKFLLVLDDVW 133 (519)
Q Consensus 112 -~~~~l~~~-l~~~~~LlvlDdv~ 133 (519)
........ ..+++++|++|++.
T Consensus 243 ~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 243 MVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEEEChH
Confidence 11111111 25799999999994
No 80
>PRK06620 hypothetical protein; Validated
Probab=98.25 E-value=8.3e-06 Score=74.08 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=77.4
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK 123 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (519)
+.++|+|++|+|||+|++.+++.. .. .++..... . + ...+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~~~~~------~------------------~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIKDIFF------N------------------E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcchhhh------c------------------h-------hHHh-c
Confidence 567899999999999999887632 11 12110000 0 0 0111 2
Q ss_pred eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-------HHHhcCCCCeeecCCCChhhHHHHHHHhhhCC
Q 048774 124 KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-------VAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGT 196 (519)
Q Consensus 124 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 196 (519)
.-++++||++......+..+...+.. .|..+|+|++... +..++.....+.+++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 24688899964322222222222222 3668999987432 23334444579999999999888888776532
Q ss_pred CCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 197 RDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
+. ..+ ++...-|++.+.|--..+
T Consensus 164 ~l-~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SV-TIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CC-CCC---HHHHHHHHHHccCCHHHH
Confidence 21 121 566666777776654433
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.25 E-value=4.6e-06 Score=78.20 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=92.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.-+-.++||++|+||||||+.+... -+.+ ...||..+......+-.+.++.+-... ..+.
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~t--sk~~--SyrfvelSAt~a~t~dvR~ife~aq~~----------------~~l~ 220 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIAST--SKKH--SYRFVELSATNAKTNDVRDIFEQAQNE----------------KSLT 220 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhh--cCCC--ceEEEEEeccccchHHHHHHHHHHHHH----------------Hhhh
Confidence 4566779999999999999999873 2222 256677766544333344444332111 1245
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEE--ecchhH---HHhcCCCCeeecCCCChhhHHHHHHHhhh--
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVS--TRNHEV---AKIMGTLPAYQLKKLSYNDCLAIFAQHSL-- 194 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvT--sr~~~~---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~-- 194 (519)
.++-+|.+|.+......+.+. ++|.-..|.-++|. |.+... ...+....++.++.|..++-..++.+..-
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 678899999996544333333 34444457766654 444322 11223347789999999999998887322
Q ss_pred -CCCC---CCCCc---hHHHHHHHHHHhhCCCc
Q 048774 195 -GTRD---FSSHM---SLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 195 -~~~~---~~~~~---~~~~~~~~i~~~~~g~P 220 (519)
.+.. ..+++ ..+.+..-++..|+|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 2222 11221 12445556667777655
No 82
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.4e-06 Score=61.91 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=36.2
Q ss_pred cccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCC
Q 048774 430 RLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDC 485 (519)
Q Consensus 430 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~ 485 (519)
+|++|++++|.+..+|+ .+..+++|++|++++|.++.+|+ .|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56667777777766653 45666777777777666664443 5566666666666665
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.3e-06 Score=84.56 Aligned_cols=191 Identities=14% Similarity=0.146 Sum_probs=102.3
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceE-----EEEEcCCCCHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKA-----WTCVSDDFDVIRLTK 92 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~-----wv~~~~~~~~~~~~~ 92 (519)
.++|.+..++.|...+.. +.-++..+++|+.|+||||+|..+++. +... +.... +-.++... .-+
T Consensus 17 eiiGq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~--l~c~~~~~~~~~~~~~~~~c~~c~----~c~ 88 (397)
T PRK14955 17 DITAQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKA--VNCQRMIDDADYLQEVTEPCGECE----SCR 88 (397)
T ss_pred hccChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHH--hcCCCCcCcccccccCCCCCCCCH----HHH
Confidence 346877777766654442 112345669999999999999988772 2210 00000 00111110 001
Q ss_pred HHHHHhhcc----CCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec-c
Q 048774 93 TILTSIVTH----QNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR-N 162 (519)
Q Consensus 93 ~il~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr-~ 162 (519)
.+....... ........++..+ +.+.+ .+++-++|+|+++......+..+...+....+.+.+|+++. .
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 110000000 0001111233322 22222 24556889999976665566667677666555666665553 3
Q ss_pred hhHHHhcC-CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 163 HEVAKIMG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 163 ~~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
..+...+. ....+++.+++.++....+...+...+.... ++.+..|++.++|.+.-+
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 33332211 1246889999999988888776543221111 677888999999987533
No 84
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=3.8e-06 Score=91.58 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=94.4
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------CceE-EEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------DLKA-WTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~-wv~~~~~~~~~~~~ 91 (519)
+.++||++++.++...+.. ....-++++|++|+||||+|+.+++ ++.... +..+ .++.+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r---~~~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~l------- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR---RRQNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGLL------- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhc---CCcCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhhh-------
Confidence 5678999999888754432 2334557999999999999999987 433221 1222 2333221
Q ss_pred HHHHHHhhccCCCCCCCH-HHHHHHHHHHh-cCCeEEEEecCccccC-------ccchhhhccccCCCCCCcEEEEEecc
Q 048774 92 KTILTSIVTHQNVDNLNL-NKLQEELNKQL-SGKKFLLVLDDVWNRN-------YDDWVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~-~~~~~~l~~~l-~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
..... ...+. +.+...+...- .+.+++|++|+++... ..+...+..+.... ..-++|-+|..
T Consensus 255 -------~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 255 -------QAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred -------hcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 00000 01111 11222222221 2468999999986431 11211222221111 23556666665
Q ss_pred hhHHHh-------cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 163 HEVAKI-------MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 163 ~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.+..+. ......+.+.+++.+++.+++............-.-.++....+++.+.++.-
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 433211 11346799999999999999754332111100001115566667777766553
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=7e-06 Score=85.05 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=105.4
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT 100 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 100 (519)
++|.+.+++.|...+.. +.-.+..+++|+.|+||||+|+.+++. +.... ..-+-.++...+ -+.+...-..
T Consensus 15 ivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~-~~~~~pCg~C~~----C~~i~~~~~~ 85 (584)
T PRK14952 15 VVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARS--LNCAQ-GPTATPCGVCES----CVALAPNGPG 85 (584)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHH--hcccc-CCCCCcccccHH----HHHhhcccCC
Confidence 46888877777665542 223445679999999999999998872 22110 000001111100 1111000000
Q ss_pred c------CCCCCCCHHHHHH---HHHH-HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc
Q 048774 101 H------QNVDNLNLNKLQE---ELNK-QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM 169 (519)
Q Consensus 101 ~------~~~~~~~~~~~~~---~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~ 169 (519)
. .......+++... .+.. -..+++-++|||+++..+......+...+......+.+|++|.+ ..+...+
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 0 0001112222221 1111 11245568999999877666666677777665556666655543 3333222
Q ss_pred -CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHHh
Q 048774 170 -GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTLG 227 (519)
Q Consensus 170 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 227 (519)
.....+++..++.++..+.+.+.+...+...+ ++.+..|++.++|.+. ++..+-
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22467999999999998888876654332111 4567778889999774 444443
No 86
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.22 E-value=7.7e-06 Score=77.39 Aligned_cols=167 Identities=20% Similarity=0.171 Sum_probs=105.1
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
..|.+|+.++..|...+...+..-+..+.|+|-+|+|||.+.+.+.+.. -...+|+++-..++...+...|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHHHHHh
Confidence 5688999999999987776665445556799999999999999999832 12578999999999999999999998
Q ss_pred hccCC-CCC-----CCHHHHHHHHHHH--h--cCCeEEEEecCccccCccc------hhhhccccCCCCCCcEEEEEecc
Q 048774 99 VTHQN-VDN-----LNLNKLQEELNKQ--L--SGKKFLLVLDDVWNRNYDD------WVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 99 ~~~~~-~~~-----~~~~~~~~~l~~~--l--~~~~~LlvlDdv~~~~~~~------~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
..... ... +........+.++ . +++.++||+||++.....+ +..+-..++. +...|+...-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~ 158 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPS 158 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccc
Confidence 62221 111 1222333444442 2 2468999999995432111 1111111121 24444433322
Q ss_pred hhH--HHhcCC--CCeeecCCCChhhHHHHHHHh
Q 048774 163 HEV--AKIMGT--LPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 163 ~~~--~~~~~~--~~~~~l~~L~~~ea~~L~~~~ 192 (519)
-+. ....+. ..++.....+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 211 111222 245667889999999998764
No 87
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=7.2e-06 Score=85.45 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=105.4
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC----ceEEEEEcCCCCHHHHHHHHHH
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD----LKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~il~ 96 (519)
.+|.+.+++.|...+.. +.-.+..+++|+.|+||||+|+.+++. +..... +..+-.++... --+.+..
T Consensus 26 liGq~~~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~--L~c~~~~~~~~~~~~~cg~c~----~C~~i~~ 97 (598)
T PRK09111 26 LIGQEAMVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARA--LNYEGPDGDGGPTIDLCGVGE----HCQAIME 97 (598)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHh--hCcCCccccCCCccccCcccH----HHHHHhc
Confidence 57888888877665442 223446679999999999999998873 221110 00010111110 0011111
Q ss_pred Hhhc----cCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHH
Q 048774 97 SIVT----HQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAK 167 (519)
Q Consensus 97 ~l~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~ 167 (519)
.... -........++....+... ..+++-++|+|+++..+......+...+......+++|++|.. ..+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 0000 0000112233333222111 1244568999999776655566666666655557777666533 33322
Q ss_pred hc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 168 IM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 168 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.+ .....+.+..++.++....+.+.+........ ++.+..|++.++|.+.-+
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDG 230 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22 12367899999999999988887644332111 467788899999988544
No 88
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=3.3e-07 Score=83.48 Aligned_cols=112 Identities=24% Similarity=0.296 Sum_probs=78.3
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcC
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKL 474 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l 474 (519)
+.-.++++.|.+..+. .....++..+.+|..||+++|.++++-.+-..|-+++.|.++.|.|..+ +.+.+|
T Consensus 303 vKL~Pkir~L~lS~N~--------i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KL 373 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR--------IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKL 373 (490)
T ss_pred hhhccceeEEeccccc--------eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhh
Confidence 3345666666655544 2222334567777777777777776644444566677777777777655 457889
Q ss_pred CCCcEEeccCCCchhHhH--HhhcccccCCEEEccCCCCCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLC--AAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
.+|..||+++| +++.+- ..++++++|+++.+.+|+ +..+|.
T Consensus 374 YSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 374 YSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 99999999998 777764 369999999999999998 776664
No 89
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.1e-05 Score=80.44 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc--------CCCceE-EEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN--------HFDLKA-WTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~--------~f~~~~-wv~~~~~~~~~~ 89 (519)
+.++|.+..++.+...... +.-++.++++|++|+|||++|..+.+ .+.. .|...+ -++....... +
T Consensus 17 ~~iig~~~~~~~l~~~i~~--~~~~~~~L~~G~~G~GKt~~a~~la~--~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN--NHLAQALLFCGPRGVGKTTCARILAR--KINQPGYDDPNEDFSFNIFELDAASNNSV-D 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence 3457999888877765542 22345777999999999999998876 2221 121111 1111110111 1
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHh
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKI 168 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~ 168 (519)
..+.++.+.... -..+++-++|+|+++......+..+...+......+.+|+++.. ..+...
T Consensus 92 ~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111222211100 01234568999999655444455554444433345555555533 222211
Q ss_pred -cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 169 -MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 169 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
......+++.+++.++....+...+...+...+ ++.+..+++.++|.+-
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 112356889999999998888876654332112 5677888888888665
No 90
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=9.3e-06 Score=87.53 Aligned_cols=188 Identities=9% Similarity=0.037 Sum_probs=103.8
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH---
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS--- 97 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~--- 97 (519)
++|.+.+++.|...+.. +.-.+..+++|+.|+||||+|+.+.+...-.+..... .++.+.+ -+.+...
T Consensus 17 iiGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~s----C~~~~~g~~~ 87 (824)
T PRK07764 17 VIGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDS----CVALAPGGPG 87 (824)
T ss_pred hcCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHH----HHHHHcCCCC
Confidence 46888877777665542 2234566799999999999999888732110110000 0011000 0000000
Q ss_pred ---hhccCCCCCCCHHHHHHHHH----HHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc
Q 048774 98 ---IVTHQNVDNLNLNKLQEELN----KQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM 169 (519)
Q Consensus 98 ---l~~~~~~~~~~~~~~~~~l~----~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~ 169 (519)
+..-.......+++...... .-..++.-++|||+++.........|...+......+.+|++|.+. .+...+
T Consensus 88 ~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred CCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 00000001112333322111 1123556689999998777666667777777665677777666443 333322
Q ss_pred C-CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 170 G-TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 170 ~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
. ....|++..++.++..+++.+.+........ ++....|++.++|.+.
T Consensus 168 rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR 216 (824)
T PRK07764 168 RSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVR 216 (824)
T ss_pred HhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 2 2467899999999988888776533222111 4567788999999874
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=9.1e-07 Score=62.84 Aligned_cols=58 Identities=36% Similarity=0.459 Sum_probs=51.0
Q ss_pred CcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCC
Q 048774 452 RYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~ 510 (519)
++|++|++++|.++.+|+ .|..+++|++|++++| .+..+|+ .|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999998885 6788999999999988 6667654 68999999999999997
No 92
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.5e-06 Score=75.61 Aligned_cols=103 Identities=25% Similarity=0.290 Sum_probs=50.0
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcccc-CCCcCcEEeccCCCCcccC--cchhc
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVG-DLRYLRHLNLSRTEIKTLP--ESVSK 473 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~l~l~~~~i~~lp--~~~~~ 473 (519)
.+.+|+.|.+..+. ....+.+..+++|+.|++++|.++.+++.+. .+++|+.|++++|.|..+- ..+..
T Consensus 40 ~l~~L~~L~Ls~N~--------I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ--------ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSS 111 (175)
T ss_dssp T-TT--EEE-TTS----------S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG
T ss_pred hhcCCCEEECCCCC--------CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHc
Confidence 45677777666555 3345567789999999999999999876553 6899999999999987543 35678
Q ss_pred CCCCcEEeccCCCchhHhHH----hhcccccCCEEEccC
Q 048774 474 LYNLHTLLLEDCRRLKKLCA----AMGNLIKLHHLNNSN 508 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~----~~~~l~~L~~l~l~~ 508 (519)
+++|+.|++.+| .+...+. -+..+++|+.||-..
T Consensus 112 l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 112 LPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 899999999998 4443332 377899999997643
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.15 E-value=3.8e-05 Score=77.47 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=91.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
....++|+|++|+|||.|++++++ ...... ..+++++. .++...+...+... ..+... +.
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~~----~~ 196 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEFK----EK 196 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHHH----HH
Confidence 345678999999999999999998 444333 23455543 23334444444321 222332 23
Q ss_pred hcCCeEEEEecCccccCcc--chhhhccccCCC-CCCcEEEEEecch-hH--------HHhcCCCCeeecCCCChhhHHH
Q 048774 120 LSGKKFLLVLDDVWNRNYD--DWVDFSRPLGAS-AQGSKIIVSTRNH-EV--------AKIMGTLPAYQLKKLSYNDCLA 187 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~~~--~~~~l~~~l~~~-~~~~~ilvTsr~~-~~--------~~~~~~~~~~~l~~L~~~ea~~ 187 (519)
+++ .-+|+|||++..... ....+...+... ..+..+|+||... .. ..++.....+.+++.+.++-..
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 322 237889999643211 111222222111 1355688887642 11 1122222468889999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 188 IFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 188 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
++.+.+.......+ ++...-|++.+.|....+.-
T Consensus 276 il~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 276 ILQKKAEEEGLELP----DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHH
Confidence 99988765332222 56677788888887765443
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1e-05 Score=84.39 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=103.2
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEE-----EEcCCCCHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWT-----CVSDDFDVIRLTKT 93 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~~~~ 93 (519)
+.++|-+.++..|...+.. +.-.+..+++|+.|+||||+|+.+++...-........|. .++...+ -+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s----C~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES----CRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH----HHH
Confidence 3457888888777664432 2223456799999999999998887631110101000010 1111100 000
Q ss_pred HHHHhhc----cCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec-chh
Q 048774 94 ILTSIVT----HQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR-NHE 164 (519)
Q Consensus 94 il~~l~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr-~~~ 164 (519)
+...-.. -........+++...+... ..+++-++|+|+++.........+...+......+.+|++|. ...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1000000 0000111233333222111 234455889999977665556667777666555666555553 333
Q ss_pred HHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 165 VAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 165 ~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
+... ......+++.+++.++....+.+.+...+...+ ++.+..|++.++|..-
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr 223 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMR 223 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHH
Confidence 3322 223467899999999988888776543222111 5678889999999664
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=2e-05 Score=83.00 Aligned_cols=204 Identities=16% Similarity=0.091 Sum_probs=107.2
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC---CceEEEEEcCC---CCHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF---DLKAWTCVSDD---FDVIRLTK 92 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~~~~~ 92 (519)
+.++|++..+..+.+... ......++|+|++|+||||+|+.+++.......+ ...-|+.+... .+...+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia---~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA---SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCcHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 346788887777654432 2234568899999999999999998743222222 12234433321 11111111
Q ss_pred HH---------------HHHhhccCC---------------CCCCCH-HHHHHHHHHHhcCCeEEEEecCccccCccchh
Q 048774 93 TI---------------LTSIVTHQN---------------VDNLNL-NKLQEELNKQLSGKKFLLVLDDVWNRNYDDWV 141 (519)
Q Consensus 93 ~i---------------l~~l~~~~~---------------~~~~~~-~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~ 141 (519)
.+ +...+.... .+...+ ...+..+.+.+.++++.++-|+.|..+...|.
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 111110000 001111 22456677777777777777666655555565
Q ss_pred hhccccCCCCCCcEEEE--EecchhH-HHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhC
Q 048774 142 DFSRPLGASAQGSKIIV--STRNHEV-AKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCD 217 (519)
Q Consensus 142 ~l~~~l~~~~~~~~ilv--Tsr~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 217 (519)
.+...+....+...+++ ||++... ...+ .....+.+.+++.+|...++.+.+..... ..+ ++....|.+.+.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~~ys~ 386 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIARYTI 386 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHCCC
Confidence 55554444444444555 4553321 1111 12245788999999999999987653221 111 344555555554
Q ss_pred CCchhHHHHhhh
Q 048774 218 GLPLAAQTLGGL 229 (519)
Q Consensus 218 g~PLal~~~~~~ 229 (519)
.-+.++..++..
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 445666655444
No 96
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1.7e-05 Score=83.44 Aligned_cols=193 Identities=12% Similarity=0.114 Sum_probs=105.4
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
+.++|-+..++.|...+.. +.-.+..+++|+.|+||||+|+.+++ .+.......-+-.++ .-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~--~~i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~~~~~~c~----~c~~c~~i~~~~ 87 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE--GRVAHAYLFTGPRGVGKTSTARILAK--AVNCTTNDPKGRPCG----TCEMCRAIAEGS 87 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCCCCc----cCHHHHHHhcCC
Confidence 3467888888877654432 11234567999999999999999886 222111000000011 111122221111
Q ss_pred hcc----CCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHh
Q 048774 99 VTH----QNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKI 168 (519)
Q Consensus 99 ~~~----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~ 168 (519)
... ........++....+ +.+ .+++-++|||+++.........+...+......+.+|+++.+. .+...
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 000 000112233332222 211 2456689999997665555556666665554566666666442 23222
Q ss_pred c-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 169 M-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 169 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
+ .....+.+..++..+....+.+.+...+.... ++.+..|++.++|.+..+.
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAE 219 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 1 22356788999999988888877654332111 5678889999999886443
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.14 E-value=1.8e-05 Score=80.95 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=92.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCC--ceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD--LKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
..+.++|+|++|+|||+|++.+++ ....++. .+++++.. .+...+...+... ..+. +.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~----~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TMEE----FKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cHHH----HHHH
Confidence 345678999999999999999998 5554432 34455433 2233333333211 1222 2233
Q ss_pred hcCCeEEEEecCccccCcc--chhhhccccCC-CCCCcEEEEEecchh---------HHHhcCCCCeeecCCCChhhHHH
Q 048774 120 LSGKKFLLVLDDVWNRNYD--DWVDFSRPLGA-SAQGSKIIVSTRNHE---------VAKIMGTLPAYQLKKLSYNDCLA 187 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~~~--~~~~l~~~l~~-~~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~L~~~ea~~ 187 (519)
++. .-+|+|||++..... ....+...+.. ...+..|++||.... +..++.....+.+++.+.++-..
T Consensus 209 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 332 348899999643211 11122221111 112456888876431 12223333568899999999999
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 188 IFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 188 L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
++.+.+...... .+ ++...-|++.+.|....+.-
T Consensus 288 il~~~~~~~~~~-l~---~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 288 ILKKKAEEEGID-LP---DEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHHcCCC-CC---HHHHHHHHcCcCCCHHHHHH
Confidence 999887643221 12 56788888888887765443
No 98
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=6.5e-05 Score=75.90 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=84.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++|+|++|+|||+|++.+++ .+......+++++. ..+...+...+... .. ..++..++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~------~~f~~~~~~~l~~~------~~----~~f~~~~~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS------ELFTEHLVSAIRSG------EM----QRFRQFYRN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH------HHHHHHHHHHHhcc------hH----HHHHHHccc
Confidence 35678999999999999999998 44333334455542 23334444443221 11 223333333
Q ss_pred CeEEEEecCccccCc--cchhhhccccCC-CCCCcEEEEEecch-h--------HHHhcCCCCeeecCCCChhhHHHHHH
Q 048774 123 KKFLLVLDDVWNRNY--DDWVDFSRPLGA-SAQGSKIIVSTRNH-E--------VAKIMGTLPAYQLKKLSYNDCLAIFA 190 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTsr~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L~~ 190 (519)
.-++++||++.... ...+++...+.. ...+..||+||... . +..++.....+.+.+++.++-..++.
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34788899854321 111222222211 11355788888542 1 12223333578899999999999998
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhhCCC
Q 048774 191 QHSLGTRDFSSHMSLEEIGRKIVTKCDGL 219 (519)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 219 (519)
+.+......-+ ++...-|++.+.+.
T Consensus 282 ~k~~~~~~~l~----~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIRIE----ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhcCCC
Confidence 87754332111 44455566655544
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=2.3e-05 Score=80.04 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=101.1
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhh--hcC----------------CC-ceEEEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRV--QNH----------------FD-LKAWTCV 81 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~--~~~----------------f~-~~~wv~~ 81 (519)
.+|-+...+.|...+.. +.-++..+++|+.|+||||+|+.+++...- ... +. .++.++.
T Consensus 16 iiGqe~v~~~L~~~I~~--grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 16 LIGQESVSKTLSLALDN--NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred ccCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 45666665556544432 223445579999999999999987762100 000 10 1111111
Q ss_pred cCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEE
Q 048774 82 SDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKII 157 (519)
Q Consensus 82 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il 157 (519)
.. ....++....+... ..++.-++|+|+++..+......+...+....+.+++|
T Consensus 94 as----------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 94 AS----------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred cc----------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 11 11223333322211 12456689999998776656666666666555677777
Q ss_pred EEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 158 VSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 158 vTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
++|.+. .+...+ .....+++.+++.++....+.+.+...+.... ++.+..|++.++|.+.-+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDT 215 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 777653 111111 12367899999999999988876654332221 567788999999988443
No 100
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.13 E-value=2.6e-07 Score=96.20 Aligned_cols=109 Identities=26% Similarity=0.367 Sum_probs=61.6
Q ss_pred hhhhhcCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcc
Q 048774 392 FEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPES 470 (519)
Q Consensus 392 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~ 470 (519)
++.+-++++|+.|.+..+. ...+|.... ++..|+.|++|||.++.+|..+-.+..|++|...+|.+...| .
T Consensus 376 ~p~l~~~~hLKVLhLsyNr-------L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e 447 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNR-------LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-E 447 (1081)
T ss_pred hhhhccccceeeeeecccc-------cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-h
Confidence 4555556666655554443 122333322 566666666666666666666666666666666666666665 5
Q ss_pred hhcCCCCcEEeccCCCchhH--hHHhhcccccCCEEEccCCC
Q 048774 471 VSKLYNLHTLLLEDCRRLKK--LCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 471 ~~~l~~L~~l~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~ 510 (519)
+.++++|+.+|++.| .+.. +|..... ++|++||++||.
T Consensus 448 ~~~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCc
Confidence 666677777777665 3332 3332222 567777777765
No 101
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=1.7e-05 Score=80.38 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=101.2
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc---------------------CCCceE
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN---------------------HFDLKA 77 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~~~ 77 (519)
+..+|.+..+..|...+.. +.-.+..+++|+.|+||||+|+.+++...-.. +++ .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 3456988888877665442 11235567999999999999988876211000 011 11
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH-HHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEE
Q 048774 78 WTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN-KQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKI 156 (519)
Q Consensus 78 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~i 156 (519)
+++........ +...+...+. ....+++-++|+|+++.........+...+......+.+
T Consensus 94 ~i~g~~~~gid-------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 94 EIDGASHRGIE-------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred EeeccccCCHH-------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11110000111 1111111111 011255678999999765544455566666555456667
Q ss_pred EEEecc-hhHHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHH
Q 048774 157 IVSTRN-HEVAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTL 226 (519)
Q Consensus 157 lvTsr~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 226 (519)
|++|.. ..+... ......+++.+++.++....+...+...+...+ ++.+..|++.++|.+. |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 222222 112356899999999998888876543222111 5678889999999764 44333
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.12 E-value=9e-06 Score=87.95 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=82.3
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-----C-CceEE-EEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-----F-DLKAW-TCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-----f-~~~~w-v~~~~~~~~~~~~ 91 (519)
+.++||++++..+...+.. ....-++++|++|+|||++|+.+++ ++... + ...+| ++++ .
T Consensus 182 ~~~igr~~ei~~~~~~L~~---~~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~~------~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR---RKKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDMG------S-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecHH------H--
Confidence 5678999999988765542 2334567999999999999999987 33221 1 22233 2211 1
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHh-cCCeEEEEecCccccC------c--cchhh-hccccCCCCCCcEEEEEec
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQL-SGKKFLLVLDDVWNRN------Y--DDWVD-FSRPLGASAQGSKIIVSTR 161 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------~--~~~~~-l~~~l~~~~~~~~ilvTsr 161 (519)
++. ... ...+.+.....+.+.+ ..++.+|++|+++..- . .+... +...+.. ..-++|-+|.
T Consensus 249 --l~a----~~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt 319 (731)
T TIGR02639 249 --LLA----GTK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTT 319 (731)
T ss_pred --Hhh----hcc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecC
Confidence 110 000 0112222222222222 3468899999996321 0 11112 2222221 1345555555
Q ss_pred chhHHHh-------cCCCCeeecCCCChhhHHHHHHHhh
Q 048774 162 NHEVAKI-------MGTLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 162 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
..+.... ......+.++.++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4332111 1123578999999999999998654
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=1.9e-05 Score=76.74 Aligned_cols=220 Identities=14% Similarity=0.084 Sum_probs=124.0
Q ss_pred eeeehhhhhhccccccccceeeeEeecCCCCCCCCC-CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEc
Q 048774 6 AIVRSDALEAAAHDVFPCRKQAFIWAASPEETMPEW-PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVS 82 (519)
Q Consensus 6 ~~~~~~~l~~~~~~~f~gR~~~~~~l~~~~~~~~~~-~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~ 82 (519)
+..+-..+........+||+.++..+..++...-+. ..+-..|.|-+|.|||.+...++.+ ..... ..++.+++.
T Consensus 137 ~~~~~~l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~--~~~~~~~~~~v~inc~ 214 (529)
T KOG2227|consen 137 EQRSESLLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS--LSKSSKSPVTVYINCT 214 (529)
T ss_pred HHHHHHHHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh--hhhhcccceeEEEeec
Confidence 333333344445567889999887776544433332 3455669999999999999988874 22222 245777777
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC--CeEEEEecCccccCccchhhhccccCCCC-CCcEEEEE
Q 048774 83 DDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG--KKFLLVLDDVWNRNYDDWVDFSRPLGASA-QGSKIIVS 159 (519)
Q Consensus 83 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-~~~~ilvT 159 (519)
.-....+++..|+..+.........+ .+....+..+..+ ..+|+|+|..+......-..+...+.+.. +++++++.
T Consensus 215 sl~~~~aiF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 215 SLTEASAIFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred cccchHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 76678888888888774333212222 3445555555544 36899999986432222222222222221 46665544
Q ss_pred ecch--hH----HHhcC-----CCCeeecCCCChhhHHHHHHHhhhCCCCC-CCCchHHHHHHHHHHhhCCCchhHHHHh
Q 048774 160 TRNH--EV----AKIMG-----TLPAYQLKKLSYNDCLAIFAQHSLGTRDF-SSHMSLEEIGRKIVTKCDGLPLAAQTLG 227 (519)
Q Consensus 160 sr~~--~~----~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~ 227 (519)
---. +. ...+. ....+..++++.++-.++|..++...... ..++..+-.|++++.-.|.+-.|+.+.-
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3211 11 11111 23577889999999999999887543221 1122233333444433444445554444
Q ss_pred h
Q 048774 228 G 228 (519)
Q Consensus 228 ~ 228 (519)
+
T Consensus 374 ~ 374 (529)
T KOG2227|consen 374 R 374 (529)
T ss_pred H
Confidence 3
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=5.3e-05 Score=76.71 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=91.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCC-C-ceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-D-LKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
...++|+|++|+|||+|+..+++ .+.... . .++|++. .++...+...+... ..+.. .+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~f----~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNEF----REKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHHH----HHHH
Confidence 34588999999999999999998 444433 2 4556654 33444454444321 22222 2233
Q ss_pred cCCeEEEEecCccccC-----ccchhhhccccCCCCCCcEEEEEec-chhHH--------HhcCCCCeeecCCCChhhHH
Q 048774 121 SGKKFLLVLDDVWNRN-----YDDWVDFSRPLGASAQGSKIIVSTR-NHEVA--------KIMGTLPAYQLKKLSYNDCL 186 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~-----~~~~~~l~~~l~~~~~~~~ilvTsr-~~~~~--------~~~~~~~~~~l~~L~~~ea~ 186 (519)
....-+|++||++... +..+..+...+.. .+..||+||. +..-. .++.....+.+++.+.+.-.
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 3345589999996321 1112122222222 2457888875 32211 12223356789999999999
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 187 AIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
.++.+.+.......+ ++...-|++.+.|.-..+.-
T Consensus 270 ~IL~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 270 KIARKMLEIEHGELP----EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHHhcCCCCC----HHHHHHHHhccccCHHHHHH
Confidence 999888754332222 56677788887776555443
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.4e-05 Score=78.80 Aligned_cols=172 Identities=13% Similarity=0.137 Sum_probs=97.5
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc---------------------CCCceEEE
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN---------------------HFDLKAWT 79 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~---------------------~f~~~~wv 79 (519)
++|-+..+..|...... +.-.+..+++|+.|+||||+|+.++.. +.. .+..++++
T Consensus 18 iiGq~~i~~~L~~~i~~--~~i~hayLf~Gp~G~GKTtlAr~lAk~--L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 18 VIGQEIVVRILKNAVKL--QRVSHAYIFAGPRGTGKTTIARILAKV--LNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred ccChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHH--hcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 45777777666554432 122345568999999999999988762 211 01111111
Q ss_pred EEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCc
Q 048774 80 CVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGS 154 (519)
Q Consensus 80 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~ 154 (519)
+... ....++.. .+.... .+++-++|+|+++.........+...+....+.+
T Consensus 94 daas----------------------~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 94 DAAS----------------------NRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred eCcc----------------------CCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 1111 11122211 122221 3456799999997665444555555555544455
Q ss_pred EEEEEecc-hhHHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 155 KIIVSTRN-HEVAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 155 ~ilvTsr~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.+|++|.+ ..+... ......+.+.+++.++....+...+...+...+ ++.+..|++.++|.+..+
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDA 217 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 55555533 333222 122357889999999998888876654332221 466778888999977543
No 106
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=8.9e-05 Score=71.82 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=63.0
Q ss_pred CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCC
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFS 200 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 200 (519)
++-++|||+++..+......+...+.....++.+|++|.+.. +...+ .....+.+.+++.+++.+.+...... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~----~ 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE----S 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----C
Confidence 344557899987776666667777766556777777777653 33222 22467899999999999988765311 1
Q ss_pred CCchHHHHHHHHHHhhCCCchhH
Q 048774 201 SHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 201 ~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.++.+..++..++|.|...
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRA 200 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHH
Confidence 1445667889999999643
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6e-05 Score=78.06 Aligned_cols=195 Identities=13% Similarity=0.173 Sum_probs=103.6
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc-
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT- 100 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~- 100 (519)
+|-+..++.|...... +.-.+..+++|+.|+||||+|+.+++...-....... .++.. ..-+.+......
T Consensus 19 iGQe~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~~g~hpD 89 (624)
T PRK14959 19 AGQETVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVTQGMHVD 89 (624)
T ss_pred cCCHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHhcCCCCc
Confidence 5766666666554432 1124566699999999999999888732110000000 00000 000111100000
Q ss_pred ---cCCCCCCCHHHHHHHHHHH-----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-C
Q 048774 101 ---HQNVDNLNLNKLQEELNKQ-----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-G 170 (519)
Q Consensus 101 ---~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~ 170 (519)
-........+.... +.+. ..+++-++|||+++.........+...+........+|++|.. ..+...+ .
T Consensus 90 v~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 90 VVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred eEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh
Confidence 00000111222211 2211 2345679999999776655556666666544445666665554 3333221 2
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHHhhhc
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTLGGLL 230 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~l 230 (519)
....+++.+++.++....+...+........ ++.+..|++.++|.+ .|+..+...+
T Consensus 169 Rcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2357889999999999888876543322111 567888999999865 5776665443
No 108
>CHL00181 cbbX CbbX; Provisional
Probab=98.08 E-value=9.3e-05 Score=70.41 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=71.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++++|++|+|||++|+.+++.....+.-...-|+.+.. . .+...+.... .......+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~----~l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----D----DLVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----H----HHHHHHhccc------hHHHHHHHHHc---
Confidence 34567999999999999999976211111111111333331 1 1222221111 11122222222
Q ss_pred CeEEEEecCcccc---------CccchhhhccccCCCCCCcEEEEEecchhHHHhc--------CCCCeeecCCCChhhH
Q 048774 123 KKFLLVLDDVWNR---------NYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIM--------GTLPAYQLKKLSYNDC 185 (519)
Q Consensus 123 ~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~--------~~~~~~~l~~L~~~ea 185 (519)
..-+|+||+++.. .......+...+.....+.+||+++....+.... .....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2348999999642 1111222333333333456777776544332111 1134688999999999
Q ss_pred HHHHHHhhhCC
Q 048774 186 LAIFAQHSLGT 196 (519)
Q Consensus 186 ~~L~~~~~~~~ 196 (519)
.+++...+...
T Consensus 202 ~~I~~~~l~~~ 212 (287)
T CHL00181 202 LQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHh
Confidence 99988876543
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.07 E-value=3.1e-05 Score=76.86 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=91.2
Q ss_pred ccccceeeeEeecCCCCC---C-------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 20 VFPCRKQAFIWAASPEET---M-------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~---~-------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
...|+++.++.+...... . .-..++.++|+|++|+|||++|+.+++ .....| +.+.. ..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~ 191 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SE 191 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HH
Confidence 456878777666543211 0 112345678999999999999999998 433333 11111 11
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHH-HhcCCeEEEEecCccccC-----------c---cchhhhccccCC--CCC
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELNK-QLSGKKFLLVLDDVWNRN-----------Y---DDWVDFSRPLGA--SAQ 152 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~-----------~---~~~~~l~~~l~~--~~~ 152 (519)
+. ..... ........+.+ .-...+.+|+||+++... . ..+..+...+.. ...
T Consensus 192 l~----~~~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 192 LV----RKYIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HH----HHhhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11 11000 01111222222 223467899999986421 0 011122211211 123
Q ss_pred CcEEEEEecchhHH-Hhc----CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 153 GSKIIVSTRNHEVA-KIM----GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 153 ~~~ilvTsr~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+..||.||...... ... .....+.+...+.++..++|..++...... ... ....+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccC----CHHHHHHHcCCCC
Confidence 66788777754321 111 123568899999999999998876443221 111 2455777777654
No 110
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.07 E-value=5.1e-07 Score=89.18 Aligned_cols=95 Identities=27% Similarity=0.368 Sum_probs=73.8
Q ss_pred chhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhccc
Q 048774 419 PSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNL 498 (519)
Q Consensus 419 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l 498 (519)
...|.++....+|..||.++|.+..+|..++.+.+|+.|.++.|.+..+|+.+..|+ |..||++.| .+..+|-.|.+|
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN-kis~iPv~fr~m 233 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN-KISYLPVDFRKM 233 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC-ceeecchhhhhh
Confidence 456666777777777777888777777777778888888888777788888777544 788888876 778888888888
Q ss_pred ccCCEEEccCCCCCCCCC
Q 048774 499 IKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 499 ~~L~~l~l~~~~~l~~lP 516 (519)
+.|++|-|.+|+ +.+=|
T Consensus 234 ~~Lq~l~LenNP-LqSPP 250 (722)
T KOG0532|consen 234 RHLQVLQLENNP-LQSPP 250 (722)
T ss_pred hhheeeeeccCC-CCCCh
Confidence 888888888887 66544
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=7.8e-06 Score=79.46 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC--CCHHHHHHHHHHHhhccCCCCCCCHH-HHHH---
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD--FDVIRLTKTILTSIVTHQNVDNLNLN-KLQE--- 114 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~--- 114 (519)
+....+.|+|++|+|||||++.+++.... .+|+..+|+.+... .++.++++.++..+............ .+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 35677889999999999999999984322 36888889887744 68888888886554444322211111 1111
Q ss_pred -HHHHH-hcCCeEEEEecCccc
Q 048774 115 -ELNKQ-LSGKKFLLVLDDVWN 134 (519)
Q Consensus 115 -~l~~~-l~~~~~LlvlDdv~~ 134 (519)
..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 11111 257999999999943
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.05 E-value=6.6e-06 Score=75.64 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=102.8
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEE-EEEcCCCCHHHHHHHHHHHh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAW-TCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~il~~l 98 (519)
.++|-+..++.|...+.. ..-+..+.+||+|+|||+-|..+++..--.+-|++.+- .+.+...++. +.+.-
T Consensus 37 e~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K---- 108 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK---- 108 (346)
T ss_pred hhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh----
Confidence 345666666666554442 34567779999999999999888772211234443222 2222221111 11000
Q ss_pred hccCCCCCCCHHHHHHHHHHHh--cCCe-EEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HH-HhcCCCC
Q 048774 99 VTHQNVDNLNLNKLQEELNKQL--SGKK-FLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VA-KIMGTLP 173 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~~~~~~~ 173 (519)
..+-+.+.....+.. ...+ -+||||+++......|..++..+..+...++.++.+..-+ +- .......
T Consensus 109 -------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 109 -------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred -------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 000000000000000 0123 3899999998888889999888887766777665554422 11 1111124
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL 219 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 219 (519)
-|..++|..++.+.-+...+-..+...+ ++....|++.++|-
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 5889999999999988888765544333 56677788888773
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=2.3e-05 Score=82.30 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=101.7
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhh---------------------hcCCCceEE
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRV---------------------QNHFDLKAW 78 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~---------------------~~~f~~~~w 78 (519)
.++|.+..++.|...... +.-.+..+++|+.|+||||+|+.+.+...- ..+|+ +..
T Consensus 18 ~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ 94 (614)
T PRK14971 18 SVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHE 94 (614)
T ss_pred HhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEE
Confidence 456888777777655442 223455679999999999999887762110 01121 111
Q ss_pred EEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCc
Q 048774 79 TCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGS 154 (519)
Q Consensus 79 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~ 154 (519)
++.... ...++....+... ..+++-++|||+++..+......+...+......+
T Consensus 95 ld~~~~----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 95 LDAASN----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred eccccc----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 111111 1122222222111 12345588999997776656666777776655566
Q ss_pred EEEEEe-cchhHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 155 KIIVST-RNHEVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 155 ~ilvTs-r~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.+|++| ....+...+ .....+++.+++.++....+.+.+...+.... ++.+..|++.++|...
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr 217 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMR 217 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 666555 433333322 22467899999999999888876654332111 4567889999998664
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.05 E-value=3.1e-05 Score=75.85 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=85.4
Q ss_pred CCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 048774 38 MPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN 117 (519)
Q Consensus 38 ~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 117 (519)
.++.....++|+|+.|.|||.|++++.+ ....+.+....+.+. .......++..+... ..+..+
T Consensus 108 ~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~----------~~~~Fk 171 (408)
T COG0593 108 NPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN----------EMEKFK 171 (408)
T ss_pred ccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh----------hHHHHH
Confidence 3444678899999999999999999998 555555433333333 223333333333221 123333
Q ss_pred HHhcCCeEEEEecCccccC-----ccchhhhccccCCCCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChh
Q 048774 118 KQLSGKKFLLVLDDVWNRN-----YDDWVDFSRPLGASAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYN 183 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~~~~-----~~~~~~l~~~l~~~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ 183 (519)
+.. .-=++++||++-.. +.+...+...+.. .|-.||+||+.. .+..++...-.+.+.+.+.+
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 333 22388999996321 2222222333332 244899998642 23334444567899999999
Q ss_pred hHHHHHHHhhhCCCCCCC
Q 048774 184 DCLAIFAQHSLGTRDFSS 201 (519)
Q Consensus 184 ea~~L~~~~~~~~~~~~~ 201 (519)
....++.+.+.......+
T Consensus 248 ~r~aiL~kka~~~~~~i~ 265 (408)
T COG0593 248 TRLAILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 999999987755544333
No 115
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.03 E-value=8.5e-06 Score=87.21 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=85.9
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
+..+..+.+..+..... +.. ..++|+.|.+.++. + ..+|..+ ..+|+.|++++|.+..+|..+. .
T Consensus 198 p~~L~~L~Ls~N~LtsL---P~~-l~~nL~~L~Ls~N~------L-tsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s 262 (754)
T PRK15370 198 PEQITTLILDNNELKSL---PEN-LQGNIKTLYANSNQ------L-TSIPATL--PDTIQEMELSINRITELPERLP--S 262 (754)
T ss_pred ccCCcEEEecCCCCCcC---Chh-hccCCCEEECCCCc------c-ccCChhh--hccccEEECcCCccCcCChhHh--C
Confidence 34566666665544432 321 23577777766543 1 1234333 2468899999999998887664 5
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+|++|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++|. +..+|.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~ 321 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNS-LTALPE 321 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCc-cccCCc
Confidence 79999999999988887664 57999999998 6777776543 478889999887 777775
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=4e-05 Score=80.58 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=101.6
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT 100 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 100 (519)
.+|.+..++.|...+.. +.-.+..+++|+.|+||||+|+.+++. +...-....+-.++.. ... ...
T Consensus 20 IiGQe~~v~~L~~aI~~--~rl~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~~~~~pC~~C-------~~~---~~~ 85 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKS--NKISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKTDLLEPCQEC-------IEN---VNN 85 (725)
T ss_pred hcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHH--hcccccCCCCCchhHH-------HHh---hcC
Confidence 46888877777665542 223456679999999999999988762 2110000000000000 000 000
Q ss_pred cCC------CCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEE-EecchhHHHh
Q 048774 101 HQN------VDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIV-STRNHEVAKI 168 (519)
Q Consensus 101 ~~~------~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv-Tsr~~~~~~~ 168 (519)
... ......++.. .+.+.+ .+++-++|+|+++......+..+...+......+.+|+ |++...+...
T Consensus 86 ~~Dvieidaasn~~vd~IR-eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIR-ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000 0001122222 222222 34566899999976665556666666655444555554 4444444322
Q ss_pred -cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHH
Q 048774 169 -MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTL 226 (519)
Q Consensus 169 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 226 (519)
......+++.+++.++....+...+...+.... ++.+..+++.++|-+. |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 222367999999999999888876543322111 4567789999988764 44443
No 117
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=9.6e-05 Score=70.36 Aligned_cols=136 Identities=14% Similarity=0.087 Sum_probs=70.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++++|++|+|||++|+.+++.....+.....-++.+.. . .++..+.... .......+.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a--- 120 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA--- 120 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---
Confidence 34677999999999999977765211111111112333332 1 1222222111 12222222222
Q ss_pred CeEEEEecCccccC---------ccchhhhccccCCCCCCcEEEEEecchhHHHhc--C------CCCeeecCCCChhhH
Q 048774 123 KKFLLVLDDVWNRN---------YDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIM--G------TLPAYQLKKLSYNDC 185 (519)
Q Consensus 123 ~~~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~--~------~~~~~~l~~L~~~ea 185 (519)
.+-+|+||+++... ......+...+.....+.+||+++......... . ....+.+++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 23588999996320 111223334443334466677776543222111 1 124688999999999
Q ss_pred HHHHHHhhhC
Q 048774 186 LAIFAQHSLG 195 (519)
Q Consensus 186 ~~L~~~~~~~ 195 (519)
.+++.+.+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887644
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.02 E-value=9.5e-06 Score=67.82 Aligned_cols=20 Identities=45% Similarity=0.489 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|+|++|+|||++|+.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 46999999999999999998
No 119
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=4.5e-07 Score=89.57 Aligned_cols=116 Identities=23% Similarity=0.378 Sum_probs=88.1
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchh
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVS 472 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~ 472 (519)
..+..+..|..+.+..+. ....|..++.++ |++|-+++|+++.+|+.++.+..|..|+.+.|.+..+|+.++
T Consensus 115 ~~i~~L~~lt~l~ls~Nq-------lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQ-------LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred hhhhhhhHHHHhhhccch-------hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 344455555555444443 234566777777 888889999999888888888888889998888888999899
Q ss_pred cCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCCC
Q 048774 473 KLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVGI 519 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~~ 519 (519)
.+.+|+.|++++| .+..+|+++. --.|..||+|.|+ +..||-.|
T Consensus 187 ~l~slr~l~vrRn-~l~~lp~El~-~LpLi~lDfScNk-is~iPv~f 230 (722)
T KOG0532|consen 187 YLTSLRDLNVRRN-HLEDLPEELC-SLPLIRLDFSCNK-ISYLPVDF 230 (722)
T ss_pred hHHHHHHHHHhhh-hhhhCCHHHh-CCceeeeecccCc-eeecchhh
Confidence 8888999988887 7788888777 3468888998777 88888643
No 120
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.3e-06 Score=54.04 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=23.5
Q ss_pred cccEEeecCccccccCccccCCCcCcEEeccCCCCcccC
Q 048774 430 RLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLP 468 (519)
Q Consensus 430 ~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp 468 (519)
+|++|++++|.++++|+.++.+++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666666666666666666666665443
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.02 E-value=6.2e-05 Score=71.03 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
....++++|++|+||||+|+.+++ ..... -....++.+... . +..... ..........+...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~--~l~~~~~~~~~~~v~~~~~----~----l~~~~~------g~~~~~~~~~~~~a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK--LFKEMNVLSKGHLIEVERA----D----LVGEYI------GHTAQKTREVIKKA 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH--HHHhcCcccCCceEEecHH----H----hhhhhc------cchHHHHHHHHHhc
Confidence 345667999999999999999976 22111 111112222221 1 111110 11112222222222
Q ss_pred hcCCeEEEEecCccccCc--------cchhhhccccCCCCCCcEEEEEecchhHHH------hc-CC-CCeeecCCCChh
Q 048774 120 LSGKKFLLVLDDVWNRNY--------DDWVDFSRPLGASAQGSKIIVSTRNHEVAK------IM-GT-LPAYQLKKLSYN 183 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~~--------~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~------~~-~~-~~~~~l~~L~~~ 183 (519)
..-+|+||+++.... .....+...+........+++++...+... .. .. ...+.+++++.+
T Consensus 105 ---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~ 181 (261)
T TIGR02881 105 ---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVE 181 (261)
T ss_pred ---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHH
Confidence 234889999964221 122333333333333445555654433211 11 11 245788999999
Q ss_pred hHHHHHHHhhhC
Q 048774 184 DCLAIFAQHSLG 195 (519)
Q Consensus 184 ea~~L~~~~~~~ 195 (519)
|-.+++.+.+..
T Consensus 182 el~~Il~~~~~~ 193 (261)
T TIGR02881 182 ELMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 122
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00021 Score=64.41 Aligned_cols=184 Identities=15% Similarity=0.175 Sum_probs=106.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCC-CHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNL-NLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~-~~~~~~~~l~~~l 120 (519)
...++.++|.-|+|||.+.+.+.. ...+. ....-+......+...+...++..+......... ..+.....+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~--s~~~d-~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLA--SLNED-QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHH--hcCCC-ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 455778999999999999995543 22211 1222223334456777888888888773322222 1222223333332
Q ss_pred -cCCe-EEEEecCccccCccchhhhccccCCC---CCCcEEEEEecchh-------HHHhcC-CCCe-eecCCCChhhHH
Q 048774 121 -SGKK-FLLVLDDVWNRNYDDWVDFSRPLGAS---AQGSKIIVSTRNHE-------VAKIMG-TLPA-YQLKKLSYNDCL 186 (519)
Q Consensus 121 -~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~---~~~~~ilvTsr~~~-------~~~~~~-~~~~-~~l~~L~~~ea~ 186 (519)
++++ +.+++|+........++.++...... ...-+|+..-..+- +..... .... |.+.|++.++..
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~ 206 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETG 206 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHH
Confidence 4566 99999999765544444443332221 11123444443321 111111 1123 899999999999
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhh
Q 048774 187 AIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGL 229 (519)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 229 (519)
.++..+......+.+-. .++....|.....|.|.+|..++..
T Consensus 207 ~yl~~~Le~a~~~~~l~-~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 207 LYLRHRLEGAGLPEPLF-SDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHhccCCCcccC-ChhHHHHHHHHhccchHHHHHHHHH
Confidence 99988876653322211 1566788999999999999887743
No 123
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.01 E-value=1.5e-06 Score=90.78 Aligned_cols=88 Identities=34% Similarity=0.480 Sum_probs=59.0
Q ss_pred CCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEcc
Q 048774 428 LQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNS 507 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~ 507 (519)
.-+|+.|+++.|.+..+|..+..+.+|+.|+++.|.|.++|.+..++.+|++|+|..| .+..+|.++..+.+|++|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 3336667777776666666666666777777776666666666666667777777665 666666666667777777777
Q ss_pred CCCCCCCCCC
Q 048774 508 NTDSLEEMPV 517 (519)
Q Consensus 508 ~~~~l~~lP~ 517 (519)
.|. ++.+|.
T Consensus 123 ~N~-f~~~Pl 131 (1081)
T KOG0618|consen 123 FNH-FGPIPL 131 (1081)
T ss_pred hhc-cCCCch
Confidence 666 566654
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=5.3e-05 Score=79.59 Aligned_cols=192 Identities=11% Similarity=0.120 Sum_probs=102.1
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
..+|.+.+++.|...+... .-.+.++++|+.|+||||+|+.+++. +... ......-.++. -...+.+....
T Consensus 17 ~liGq~~i~~~L~~~l~~~--rl~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~~~~~Cg~----C~~C~~i~~g~ 88 (620)
T PRK14948 17 ELVGQEAIATTLKNALISN--RIAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDKPTPEPCGK----CELCRAIAAGN 88 (620)
T ss_pred hccChHHHHHHHHHHHHcC--CCCceEEEECCCCCChHHHHHHHHHH--hcCCCcCCCCCCCCcc----cHHHHHHhcCC
Confidence 3568888777776554421 12345679999999999999998873 2211 10000001111 11111111110
Q ss_pred hc----cCCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc
Q 048774 99 VT----HQNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM 169 (519)
Q Consensus 99 ~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~ 169 (519)
.. -........+.....+... ..+++-++|||+++.........+...+......+.+|++|.+. .+...+
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 00 0000112233333322211 12445689999997766555666666666544456555555443 332222
Q ss_pred -CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 170 -GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 170 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.....+++..++.++....+.+.+...+.... ++.+..|++.++|.+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22356788899998888877776543222111 456888999999987543
No 125
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.99 E-value=1.2e-05 Score=86.22 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCc
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLH 478 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~ 478 (519)
.+|+.|.+..+. + ..+|..+. .+|+.|++++|.+..+|..+. ++|++|++++|.++.+|..+. .+|+
T Consensus 241 ~~L~~L~Ls~N~------L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~ 307 (754)
T PRK15370 241 DTIQEMELSINR------I-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGIT 307 (754)
T ss_pred ccccEEECcCCc------c-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHH
Confidence 356666665543 2 23444443 478999999999998887664 589999999999998887653 4788
Q ss_pred EEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 479 TLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 479 ~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
.|++++| .+..+|..+. ++|+.|++++|. +.++|..
T Consensus 308 ~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~ 343 (754)
T PRK15370 308 HLNVQSN-SLTALPETLP--PGLKTLEAGENA-LTSLPAS 343 (754)
T ss_pred HHHhcCC-ccccCCcccc--ccceeccccCCc-cccCChh
Confidence 9999988 6667776543 589999999987 7778854
No 126
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.99 E-value=3.6e-05 Score=64.98 Aligned_cols=89 Identities=16% Similarity=-0.010 Sum_probs=47.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.+.+.|+|++|+||||+|+.++. ........+++++............. ...................+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL---LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH---hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999988 33333234566655544322211111 11111111222222233334444433
Q ss_pred C-eEEEEecCccccC
Q 048774 123 K-KFLLVLDDVWNRN 136 (519)
Q Consensus 123 ~-~~LlvlDdv~~~~ 136 (519)
. ..++++|+++...
T Consensus 77 ~~~~viiiDei~~~~ 91 (148)
T smart00382 77 LKPDVLILDEITSLL 91 (148)
T ss_pred cCCCEEEEECCcccC
Confidence 3 4899999996543
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.98 E-value=3.2e-05 Score=75.39 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=77.5
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|.++..+.+...... +..+++++++|++|+|||++|+.+++ .... ....++... .. ....+..+....
T Consensus 22 ~~~~~~~~~~~l~~~~~~--~~~~~~lll~G~~G~GKT~la~~l~~--~~~~---~~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 22 ECILPAADKETFKSIVKK--GRIPNMLLHSPSPGTGKTTVAKALCN--EVGA---EVLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HhcCcHHHHHHHHHHHhc--CCCCeEEEeeCcCCCCHHHHHHHHHH--HhCc---cceEeccCc-cc-HHHHHHHHHHHH
Confidence 346777776666554432 22345666899999999999999987 3222 123334333 11 111111111111
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccC-ccchhhhccccCCCCCCcEEEEEecchhH-HHh-cCCCCeee
Q 048774 100 THQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRN-YDDWVDFSRPLGASAQGSKIIVSTRNHEV-AKI-MGTLPAYQ 176 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~-~~~~~~~~ 176 (519)
... ...+.+-++|+|+++... ......+...+.....++++|+||..... .+. ......+.
T Consensus 93 ~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 93 STV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred Hhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 000 011345689999996542 12223333334444457888888865321 111 11224566
Q ss_pred cCCCChhhHHHHHHH
Q 048774 177 LKKLSYNDCLAIFAQ 191 (519)
Q Consensus 177 l~~L~~~ea~~L~~~ 191 (519)
+...+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 777777777666543
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=5.3e-05 Score=78.94 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=99.0
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHH
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
.++|.+..+..|...+.. +.-.+..+++|+.|+|||++|+.+.+. +...- +. ..++.. ..-+.+...
T Consensus 17 ~viGq~~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~~~~---~pC~~C----~~C~~i~~g 85 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNPPDG---EPCNEC----EICKAITNG 85 (559)
T ss_pred hccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC---CCCCcc----HHHHHHhcC
Confidence 457888887777655442 223455668999999999999888762 21100 00 001111 011111100
Q ss_pred hhcc----CCCCCCCHHHHHHHHHHH----hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEec-chhHHHh
Q 048774 98 IVTH----QNVDNLNLNKLQEELNKQ----LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTR-NHEVAKI 168 (519)
Q Consensus 98 l~~~----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr-~~~~~~~ 168 (519)
.... ........++........ ..++.-++|||+++.........+...+......+.+|++|. ...+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000 000112222222221111 134566899999976655555566655554444555555443 3333222
Q ss_pred c-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 169 M-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 169 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
+ .....+.+.+++.++....+...+...+.... ++.+..|++.++|.+.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R 215 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMR 215 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 1 12356888999999988888876643332111 4667788888888774
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=7.7e-05 Score=77.50 Aligned_cols=189 Identities=14% Similarity=0.105 Sum_probs=101.8
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh--
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI-- 98 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-- 98 (519)
.+|-+.+++.|...... +.-.+..+++|+.|+||||+|+.+++...-...... ..++...+- +.+...-
T Consensus 18 iiGqe~iv~~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~~~ 88 (563)
T PRK06647 18 LEGQDFVVETLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDNSL 88 (563)
T ss_pred ccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCCCC
Confidence 45766666666554432 223445679999999999999998873211100000 001111000 0000000
Q ss_pred h--ccCCCCCCCHHHHHHHHHH----HhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-C
Q 048774 99 V--THQNVDNLNLNKLQEELNK----QLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-G 170 (519)
Q Consensus 99 ~--~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~ 170 (519)
. .-........++....... -..+++-++|+|+++..+......+...+....+.+.+|++|.. ..+...+ .
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 0 0000001222333222111 12356668999999776655666676666655556666666544 3332222 2
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
....+++.+++.++....+...+...+.... ++.+..|++.++|.+..
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRD 216 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 2356889999999998888877644332221 56677889999998753
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.97 E-value=2.4e-05 Score=85.67 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=81.8
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-----C-CceEEEEEcCCCCHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-----F-DLKAWTCVSDDFDVIRLTK 92 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-----f-~~~~wv~~~~~~~~~~~~~ 92 (519)
+..+||++++..+...+.. ...+-++++|++|+|||++|+.++. ++... . ...+|. +. ...
T Consensus 179 ~~~igr~~ei~~~~~~L~r---~~~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l~----~~~--- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR---RTKNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-LD----IGL--- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc---cccCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-ee----HHH---
Confidence 4467999999999876652 2334557999999999999999887 33211 1 233442 11 111
Q ss_pred HHHHHhhccCCCCCCCHHH-HHHHHHHHhcCCeEEEEecCccccC-------ccchhhhccccCCCCCCcEEEEEecchh
Q 048774 93 TILTSIVTHQNVDNLNLNK-LQEELNKQLSGKKFLLVLDDVWNRN-------YDDWVDFSRPLGASAQGSKIIVSTRNHE 164 (519)
Q Consensus 93 ~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 164 (519)
++. ... ...+.++ +...+......++++|++|+++..- ..+...+..+.... ..-++|.+|...+
T Consensus 246 -l~a----g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 246 -LLA----GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred -Hhc----cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 110 111 1111222 2223333334568999999995211 01112222221111 2345666666554
Q ss_pred HHHh-------cCCCCeeecCCCChhhHHHHHHH
Q 048774 165 VAKI-------MGTLPAYQLKKLSYNDCLAIFAQ 191 (519)
Q Consensus 165 ~~~~-------~~~~~~~~l~~L~~~ea~~L~~~ 191 (519)
.... ......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 4221 11235678888888888888764
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=8.8e-05 Score=76.50 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
...++|+|..|+|||.|+..+++ .....+ ..+++++. .++...+...+... ..+. +++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~~----f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGDS----FRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHHH----HHHHh
Confidence 34578999999999999999998 443322 23445543 33333443333221 1122 22233
Q ss_pred cCCeEEEEecCccccCc-----cchhhhccccCCCCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHH
Q 048774 121 SGKKFLLVLDDVWNRNY-----DDWVDFSRPLGASAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCL 186 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~-----~~~~~l~~~l~~~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~ 186 (519)
.+ .=+|||||++.... ..+..+...+. ..+..|||||+.. .+...+.....+.+...+.+.-.
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 32 23788899964321 11222222222 2356688888752 22333444467899999999999
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 187 AIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
.++.+++.......+ ++.+.-|++.+.+..-.|.
T Consensus 453 aIL~kka~~r~l~l~----~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 453 AILRKKAVQEQLNAP----PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHhcCCCCC----HHHHHHHHHhccCCHHHHH
Confidence 999988755432222 5666667776666554443
No 132
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.92 E-value=4.8e-05 Score=83.69 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=82.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------Cc-eEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------DL-KAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~~-~~wv~~~~~~~~~~~~ 91 (519)
+.++||++++.++...+.. ......+++|++|+|||++|+.++. ++...+ .. ++.++++. +
T Consensus 173 ~~~igr~~ei~~~~~~l~r---~~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~~------l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR---RTKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMGA------L- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHHH------H-
Confidence 4578999999999865542 2345566899999999999999887 332211 11 22222211 1
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHh-c-CCeEEEEecCccccC-----c--cchhhhccccCCCCCCcEEEEEecc
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQL-S-GKKFLLVLDDVWNRN-----Y--DDWVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~-----~--~~~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
+ .... ...+.+.....+...+ + +++.+|+||+++..- . .+...+..+.... ..-++|-+|..
T Consensus 241 ---~----a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 ---I----AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ---h----hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 0 0000 0112222222222222 2 468999999996321 0 1112222222211 23455555554
Q ss_pred hhHHHhc-------CCCCeeecCCCChhhHHHHHHHhh
Q 048774 163 HEVAKIM-------GTLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 163 ~~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
.+..... .....+.+...+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4432111 123567888889999999887543
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.90 E-value=0.00012 Score=73.00 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=90.5
Q ss_pred cccccceeeeEeecCCCC----------CCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHH
Q 048774 19 DVFPCRKQAFIWAASPEE----------TMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVI 88 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~----------~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 88 (519)
+.++|+++.++++..... ...-..++.++++|++|+|||++|+.+++ ..... |+.+.. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----H
Confidence 345689888877765321 11113456678999999999999999987 33322 222211 1
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHH-HhcCCeEEEEecCccccC-----------ccc---hhhhccccCC--CC
Q 048774 89 RLTKTILTSIVTHQNVDNLNLNKLQEELNK-QLSGKKFLLVLDDVWNRN-----------YDD---WVDFSRPLGA--SA 151 (519)
Q Consensus 89 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~-----------~~~---~~~l~~~l~~--~~ 151 (519)
. +..... . ........+.. .-...+.+|+||+++... ... +..+...+.. ..
T Consensus 200 ~----l~~~~~------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 200 E----LVQKFI------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred H----HhHhhc------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1 111110 0 11112222222 223467899999996421 000 1111111111 11
Q ss_pred CCcEEEEEecchhHH-Hhc----CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 152 QGSKIIVSTRNHEVA-KIM----GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 152 ~~~~ilvTsr~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.+..||.||...... ... .....+.+...+.++..++|..+...... .... ....+++.+.|+-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDV----DLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcC----CHHHHHHHcCCCC
Confidence 355677676653321 111 12356889999999999999887643321 1111 1345666666644
No 134
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.90 E-value=9e-06 Score=86.71 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=67.1
Q ss_pred CcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccC
Q 048774 429 QRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSN 508 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 508 (519)
.+|+.|++++|.++.+|.. +.+|+.|++++|.++.+|... .+|+.|++++| .+..+|..++++++|+.|++++
T Consensus 382 ~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 382 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccC-cccccChHHhhccCCCeEECCC
Confidence 5688999999999888764 367899999999999888643 46788999998 6788999999999999999999
Q ss_pred CCCCCCCC
Q 048774 509 TDSLEEMP 516 (519)
Q Consensus 509 ~~~l~~lP 516 (519)
|+..+..|
T Consensus 455 N~Ls~~~~ 462 (788)
T PRK15387 455 NPLSERTL 462 (788)
T ss_pred CCCCchHH
Confidence 98555444
No 135
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00019 Score=65.54 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=41.5
Q ss_pred EEEEecchhHHHhcC--CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 156 IIVSTRNHEVAKIMG--TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 156 ilvTsr~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
|=.|||--.+..... ..-..+++..+.+|-.++..+.+..-..... ++.+.+|+++..|-|.-
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRI 219 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHH
Confidence 446777543322221 1135678899999999999887743332222 57789999999999953
No 136
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1e-05 Score=52.73 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=18.3
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDC 485 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~ 485 (519)
+|++|++++|.|+.+|+.+.+|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455666666666655555555666666666555
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=6.2e-05 Score=78.85 Aligned_cols=193 Identities=14% Similarity=0.153 Sum_probs=100.8
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|.+..++.|...+.. +.-.+..+++|+.|+||||+|+.+++...-...... -.++.. ..-..+...-.
T Consensus 17 ~iiGq~~v~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~~g~~ 87 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEITEGRS 87 (576)
T ss_pred HccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHhcCCC
Confidence 356888777776654432 223455679999999999999988773110010000 000000 00000000000
Q ss_pred c----cCCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc
Q 048774 100 T----HQNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM 169 (519)
Q Consensus 100 ~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~ 169 (519)
. -........++... +...+ .++.-++|||+++..+......+...+......+.+|++|.+ ..+...+
T Consensus 88 ~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 0 00000111222211 11111 244568999999776655555666666555556666655543 3333222
Q ss_pred -CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHH
Q 048774 170 -GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTL 226 (519)
Q Consensus 170 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 226 (519)
.....+++..++.++....+...+...+...+ ++.+..|++.++|.. .++..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 12356788999999988888765543322111 566778888888866 444444
No 138
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=7.7e-06 Score=88.97 Aligned_cols=116 Identities=27% Similarity=0.328 Sum_probs=87.5
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcc--ccccCcc-ccCCCcCcEEeccCCC-CcccC
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYH--ISELPDS-VGDLRYLRHLNLSRTE-IKTLP 468 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-~~~l~~L~~l~l~~~~-i~~lp 468 (519)
+........|...+..+. ......-.+.+.|+.|-+.+|. +..++.. +..++.|++||+++|. +.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 444445555655554443 1112222344578889888885 6666543 6779999999999765 66999
Q ss_pred cchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 469 ESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 469 ~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
.+++.|-+|++|+++++ .+..+|.++++|.+|.+||+..+..+.++|.
T Consensus 589 ~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccc
Confidence 99999999999999997 8889999999999999999999876666654
No 139
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.85 E-value=8e-05 Score=81.62 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=35.1
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++||++++.++...+.. .....++++|++|+|||++|+.++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r---~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc---CCcCceEEECCCCCCHHHHHHHHHH
Confidence 5578999999998765542 2345667999999999999999887
No 140
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=3.5e-06 Score=68.03 Aligned_cols=93 Identities=25% Similarity=0.255 Sum_probs=58.5
Q ss_pred hhhhccCCcccEEeecCccccccCccccCC-CcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhccccc
Q 048774 422 LTELFKLQRLRIFSLRGYHISELPDSVGDL-RYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIK 500 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l-~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~ 500 (519)
+..+.....|...++++|.++++|+.+... +.+..+++.+|.|+.+|..+..++.|+.|+++.| .+..+|.-+..|.+
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK 124 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence 334445555666677777777666655433 3566677777777777777777777777777766 45556665566667
Q ss_pred CCEEEccCCCCCCCCC
Q 048774 501 LHHLNNSNTDSLEEMP 516 (519)
Q Consensus 501 L~~l~l~~~~~l~~lP 516 (519)
|-+|+..+|. +.+||
T Consensus 125 l~~Lds~~na-~~eid 139 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEID 139 (177)
T ss_pred HHHhcCCCCc-cccCc
Confidence 7777666655 45544
No 141
>PRK08116 hypothetical protein; Validated
Probab=97.84 E-value=6.3e-05 Score=70.88 Aligned_cols=103 Identities=21% Similarity=0.217 Sum_probs=55.9
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK 123 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (519)
..++|+|.+|+|||.||.++++ ....+-..+++++ ...++..+...+.... ..+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 4577999999999999999998 4443334455655 3334444433332211 111222 33334443
Q ss_pred eEEEEecCccccCccchhh--hccccCC-CCCCcEEEEEecc
Q 048774 124 KFLLVLDDVWNRNYDDWVD--FSRPLGA-SAQGSKIIVSTRN 162 (519)
Q Consensus 124 ~~LlvlDdv~~~~~~~~~~--l~~~l~~-~~~~~~ilvTsr~ 162 (519)
+ ||||||+......+|.. +...+.. ...+..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 89999995332223322 2222221 1235668888865
No 142
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=5.8e-06 Score=75.51 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=55.7
Q ss_pred hhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccC
Q 048774 422 LTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL 501 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L 501 (519)
-.++.-.+.+++|++++|.+..+.. +..|++|+.|++++|.++++-..--+|-|+++|.|++| .++.+ .++..+-+|
T Consensus 300 DESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSL 376 (490)
T KOG1259|consen 300 DESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSL 376 (490)
T ss_pred hhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhh
Confidence 3344455666666666666665533 55666666666666666655544445666666777665 55555 357788888
Q ss_pred CEEEccCCC
Q 048774 502 HHLNNSNTD 510 (519)
Q Consensus 502 ~~l~l~~~~ 510 (519)
..||+++|+
T Consensus 377 vnLDl~~N~ 385 (490)
T KOG1259|consen 377 VNLDLSSNQ 385 (490)
T ss_pred eeccccccc
Confidence 999999886
No 143
>PRK10536 hypothetical protein; Provisional
Probab=97.81 E-value=2.9e-05 Score=71.02 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=73.0
Q ss_pred hhccccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE----EcC-----C
Q 048774 14 EAAAHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC----VSD-----D 84 (519)
Q Consensus 14 ~~~~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~----~~~-----~ 84 (519)
++.......+|.+....+...+. ...++++.|++|+|||+||.++..+....+.|..++... .++ +
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~-----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIE-----SKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHh-----cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCC
Confidence 33333444567776666655444 245888999999999999988776432234454433321 111 1
Q ss_pred CCHHHHHHH----HHHHhhccCCCCCCCHHHHHH----H----HHHHhcCCeE---EEEecCccccCccchhhhccccCC
Q 048774 85 FDVIRLTKT----ILTSIVTHQNVDNLNLNKLQE----E----LNKQLSGKKF---LLVLDDVWNRNYDDWVDFSRPLGA 149 (519)
Q Consensus 85 ~~~~~~~~~----il~~l~~~~~~~~~~~~~~~~----~----l~~~l~~~~~---LlvlDdv~~~~~~~~~~l~~~l~~ 149 (519)
.+..+-+.- +...+..-. .....+.... . -...++++.+ ++|+|++++.+..+...+...
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR--- 199 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR--- 199 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---
Confidence 122222222 222221110 0001111100 0 0123456544 999999987766555555444
Q ss_pred CCCCcEEEEEecch
Q 048774 150 SAQGSKIIVSTRNH 163 (519)
Q Consensus 150 ~~~~~~ilvTsr~~ 163 (519)
.+.+|++++|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 45699999886543
No 144
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.80 E-value=7.8e-05 Score=79.92 Aligned_cols=154 Identities=20% Similarity=0.232 Sum_probs=83.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhh-cC----C-CceEEEEEcCCCCHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NH----F-DLKAWTCVSDDFDVIRLTK 92 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~----f-~~~~wv~~~~~~~~~~~~~ 92 (519)
+..+||++++..+...+.. ....-++++|++|+|||++|+.++. .+. .. + +..+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r---~~~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~~l-----~~~---- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR---RRKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSL-----DIG---- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEEec-----cHH----
Confidence 4578999999999875553 2334557899999999999999886 322 11 1 2233311 111
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHHh-cCCeEEEEecCcccc--------CccchhhhccccCCCCCCcEEEEEecch
Q 048774 93 TILTSIVTHQNVDNLNLNKLQEELNKQL-SGKKFLLVLDDVWNR--------NYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 93 ~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
.++ .... ...+.+.....+...+ +..+.+|+||+++.. ...+...+..++... ..-++|-+|...
T Consensus 252 ~ll----aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 252 SLL----AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred HHh----cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 111 0100 1112222222222222 346789999999632 112222222222222 234555555544
Q ss_pred hHHHh-------cCCCCeeecCCCChhhHHHHHHHh
Q 048774 164 EVAKI-------MGTLPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 164 ~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~ 192 (519)
+.... ......+.++..+.+++.+++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 43211 113367899999999999998854
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00016 Score=69.73 Aligned_cols=193 Identities=13% Similarity=0.105 Sum_probs=102.3
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhh-------------hcCCCceEEEEEcCCCCH
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRV-------------QNHFDLKAWTCVSDDFDV 87 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~~~~~~ 87 (519)
.+|.++..+.|...... +.-++...++|+.|+||+++|..+++..-- ...++-..|+.-......
T Consensus 6 iiGq~~~~~~L~~~i~~--~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQ--NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred hCCHHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 45777777777655442 122466779999999999999777652100 111222344322100000
Q ss_pred HHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEe-
Q 048774 88 IRLTKTILTSIVTH-QNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVST- 160 (519)
Q Consensus 88 ~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTs- 160 (519)
......-+...+.. .....-.+++. +.+.+.+ .+.+-++|+|+++.........+...+.... .+.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 00000011111100 00012223332 2333333 3456699999997766555555666665444 44555554
Q ss_pred cchhHHHhcC-CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 161 RNHEVAKIMG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 161 r~~~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
....+...+. ....+.+.+++.++..+.+........ .+.....++..++|.|....
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAI 219 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHH
Confidence 4434433322 346789999999999999987642111 01113578899999996543
No 146
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.71 E-value=9.8e-05 Score=72.04 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=65.4
Q ss_pred hcC-CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccc-----ccCccccCCCcCcEEeccCCCCc----
Q 048774 396 YDI-QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS-----ELPDSVGDLRYLRHLNLSRTEIK---- 465 (519)
Q Consensus 396 ~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~l~l~~~~i~---- 465 (519)
..+ ++++.+.+.++... .......+..+..+.+|+.|++++|.+. .++..+...++|+.|++++|.++
T Consensus 133 ~~~~~~L~~L~L~~n~l~--~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 133 KDLPPALEKLVLGRNRLE--GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HhCCCCceEEEcCCCcCC--chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 344 66777766666511 0001223333446677888888888776 23334455567888888877765
Q ss_pred -ccCcchhcCCCCcEEeccCCCchhHhHHhhc-----ccccCCEEEccCCC
Q 048774 466 -TLPESVSKLYNLHTLLLEDCRRLKKLCAAMG-----NLIKLHHLNNSNTD 510 (519)
Q Consensus 466 -~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~-----~l~~L~~l~l~~~~ 510 (519)
.++..+..+++|++|++++|.....-+..+. ..++|++|++++|.
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 2334455667788888888743221111111 23688888888876
No 147
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00094 Score=64.21 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=63.4
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhcC-CCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIMG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
++.-++|||+++......-..+...+.....++.+|++|.+. .+...+. ....+.+.+++.+++...+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 455699999998776655566666666666678777777643 3333322 23678899999999998887531
Q ss_pred CCCchHHHHHHHHHHhhCCCchhHH
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
.. ++.+..++..++|.|+...
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHH
Confidence 11 3346678999999997543
No 148
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.67 E-value=9e-05 Score=79.23 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=34.6
Q ss_pred CcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHH
Q 048774 429 QRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCA 493 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~ 493 (519)
++|+.|++++|.+..+|.. ...|+.|++++|.++.+|.. ..+|+.|++++| .+..+|.
T Consensus 302 ~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~ 359 (788)
T PRK15387 302 PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPT 359 (788)
T ss_pred cccceeECCCCccccCCCC---cccccccccccCcccccccc---ccccceEecCCC-ccCCCCC
Confidence 5577777777766666542 23455566666666655541 236777777776 5555554
No 149
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=7.6e-06 Score=66.14 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=71.3
Q ss_pred cccEEeecCcccccc---CccccCCCcCcEEeccCCCCcccCcchhcCC-CCcEEeccCCCchhHhHHhhcccccCCEEE
Q 048774 430 RLRIFSLRGYHISEL---PDSVGDLRYLRHLNLSRTEIKTLPESVSKLY-NLHTLLLEDCRRLKKLCAAMGNLIKLHHLN 505 (519)
Q Consensus 430 ~L~~L~l~~~~~~~l---p~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~-~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~ 505 (519)
.+..++++.|.+-.+ +..+....+|..+++++|.+.+.|+.+...+ -+++|++++| .+.++|.++..++.|+.||
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 466778888866644 3456677889999999999999999888654 7999999998 8999999999999999999
Q ss_pred ccCCCCCCCCCC
Q 048774 506 NSNTDSLEEMPV 517 (519)
Q Consensus 506 l~~~~~l~~lP~ 517 (519)
++.|. +...|+
T Consensus 107 l~~N~-l~~~p~ 117 (177)
T KOG4579|consen 107 LRFNP-LNAEPR 117 (177)
T ss_pred cccCc-cccchH
Confidence 99998 555553
No 150
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.63 E-value=0.00058 Score=69.59 Aligned_cols=140 Identities=13% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-----CCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-----FDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEEL 116 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l 116 (519)
.++-++++|++|+|||++|+.+++ ..... .....|+++.... ++...... ............
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~~e--------Ll~kyvGe---te~~ir~iF~~A 281 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKGPE--------LLNKYVGE---TERQIRLIFQRA 281 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEeccchh--------hcccccch---HHHHHHHHHHHH
Confidence 345678999999999999999998 33322 1234444443321 11110000 000011111122
Q ss_pred HHH-hcCCeEEEEecCccccC-------ccc-----hhhhccccCCC--CCCcEEEEEecchhHH-Hhc----CCCCeee
Q 048774 117 NKQ-LSGKKFLLVLDDVWNRN-------YDD-----WVDFSRPLGAS--AQGSKIIVSTRNHEVA-KIM----GTLPAYQ 176 (519)
Q Consensus 117 ~~~-l~~~~~LlvlDdv~~~~-------~~~-----~~~l~~~l~~~--~~~~~ilvTsr~~~~~-~~~----~~~~~~~ 176 (519)
+.. ..+++++++||+++..- ..+ ...+...+... ..+..||.||...+.. ..+ ..+..+.
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 221 13478999999996321 001 11222222211 1234455555443321 111 1234588
Q ss_pred cCCCChhhHHHHHHHhhh
Q 048774 177 LKKLSYNDCLAIFAQHSL 194 (519)
Q Consensus 177 l~~L~~~ea~~L~~~~~~ 194 (519)
+...+.++..++|..+..
T Consensus 362 ~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 362 IERPDAEAAADIFSKYLT 379 (512)
T ss_pred eCCCCHHHHHHHHHHHhh
Confidence 999999999999998753
No 151
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.63 E-value=0.00017 Score=65.81 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=28.6
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
.++|.|.+|+|||+++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 556899999999999999987 67778876666644
No 152
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.62 E-value=3.9e-05 Score=77.41 Aligned_cols=79 Identities=30% Similarity=0.451 Sum_probs=41.1
Q ss_pred cccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCC
Q 048774 430 RLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNT 509 (519)
Q Consensus 430 ~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 509 (519)
+|+.|+++.|.+..+|..+..++.|+.|+++.|.+..+|...+.+++|+.|++++| .+..+|..+..+..|+.|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCC
Confidence 55555555555555544455555555555555555555554444555555555554 45555544434444555555554
No 153
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.61 E-value=0.00038 Score=69.56 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=73.4
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCe
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKK 124 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 124 (519)
+++|.|+.++||||+++.+.. ...+. .++++.........-..+.+..+ ...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~~~------------------~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLRAY------------------IELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHHHH------------------HHhhccCC
Confidence 888999999999999976665 22222 44444433221111112222211 11111267
Q ss_pred EEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHh------cCCCCeeecCCCChhhHHHHH
Q 048774 125 FLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKI------MGTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 125 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~------~~~~~~~~l~~L~~~ea~~L~ 189 (519)
.+++||.|+. ...|......+...++. ++++|+-+..+... .+....+.+.||+..|-..+-
T Consensus 96 ~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8999999944 46788888888777666 78888776544221 223467899999999876654
No 154
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.59 E-value=5.9e-05 Score=74.70 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=62.7
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhcc
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTH 101 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 101 (519)
++.++.++.+...+. ..+.++++|++|+|||++|+.+++.......|..+.|+.+....+..+.+... ...
T Consensus 178 ~i~e~~le~l~~~L~-----~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~ 248 (459)
T PRK11331 178 FIPETTIETILKRLT-----IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPN 248 (459)
T ss_pred cCCHHHHHHHHHHHh-----cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCC
Confidence 356666666655554 35677899999999999999998743333456778899988776655544322 111
Q ss_pred CCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccC
Q 048774 102 QNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRN 136 (519)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~ 136 (519)
...-........+.+..... ++++++|||++...+
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 00000000112222222222 468999999996544
No 155
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.002 Score=62.71 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=63.1
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
+++-++|||+++......-..+...+....+++.+|++|.+. .+...+ .....+.+.+++.+++.+.+.... .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T-- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C--
Confidence 456699999998777666666777777666677777666653 344332 223568899999999988886532 1
Q ss_pred CCCchHHHHHHHHHHhhCCCch
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.+ ++.+..+++.++|.|.
T Consensus 182 ~~----~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 182 MS----QDALLAALRLSAGAPG 199 (334)
T ss_pred CC----HHHHHHHHHHcCCCHH
Confidence 11 3447788999999995
No 156
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00054 Score=67.79 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=77.9
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeE
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKF 125 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (519)
++++|++|+|||+||..++. ...|+.+--++-..-....+- .......+......++.--
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sEs----------------aKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSES----------------AKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred EEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccHH----------------HHHHHHHHHHHHhhcCcce
Confidence 34999999999999999986 456765443332221111110 0111122333344456667
Q ss_pred EEEecCccccCccchhh---------------hccccCCCCCCcEEEEEecchhHHHhcC----CCCeeecCCCCh-hhH
Q 048774 126 LLVLDDVWNRNYDDWVD---------------FSRPLGASAQGSKIIVSTRNHEVAKIMG----TLPAYQLKKLSY-NDC 185 (519)
Q Consensus 126 LlvlDdv~~~~~~~~~~---------------l~~~l~~~~~~~~ilvTsr~~~~~~~~~----~~~~~~l~~L~~-~ea 185 (519)
.||+||+.. ..+|.. +....|+.++.--|+-||....+...++ ....+.++.++. ++.
T Consensus 601 iivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 601 IIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred EEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 999999832 122222 2222233334444556666667776654 235788999987 566
Q ss_pred HHHHHHhhhCCCCCCCCchHHHHHHHHHHhh
Q 048774 186 LAIFAQHSLGTRDFSSHMSLEEIGRKIVTKC 216 (519)
Q Consensus 186 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 216 (519)
.+.+...- .-.+...+..+++.+.+|
T Consensus 679 ~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 679 LEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 66665532 111222344555555555
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.56 E-value=0.00032 Score=70.40 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++.++|+|++|+|||++|+.+++ .....| +.+... .+. .... ..........+.....
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----eL~----~k~~------Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----ELI----QKYL------GDGPKLVRELFRVAEE 274 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----hhh----hhhc------chHHHHHHHHHHHHHh
Confidence 445677999999999999999998 443333 222111 011 1110 0111122222333334
Q ss_pred CCeEEEEecCccccCc--------c------chhhhccccCC--CCCCcEEEEEecchhHHHh-c----CCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY--------D------DWVDFSRPLGA--SAQGSKIIVSTRNHEVAKI-M----GTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~--------~------~~~~l~~~l~~--~~~~~~ilvTsr~~~~~~~-~----~~~~~~~l~~L 180 (519)
..+.+++||+++..-. . .+..+...+.. ...+.+||+||...+.... + .....+.+...
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 5788999999853110 0 01111111111 1235677777765443221 1 12356788999
Q ss_pred ChhhHHHHHHHhhhC
Q 048774 181 SYNDCLAIFAQHSLG 195 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~ 195 (519)
+.++..++|..+...
T Consensus 355 d~~~R~~Il~~~~~k 369 (438)
T PTZ00361 355 DEKTKRRIFEIHTSK 369 (438)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999877543
No 158
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.55 E-value=0.00013 Score=64.39 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=32.1
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.||.|+.+.+|.-.. .++..+-++|.||+|+||||-+..+++
T Consensus 29 IVGNe~tv~rl~via---~~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIA---KEGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred hhCCHHHHHHHHHHH---HcCCCCceEeeCCCCCchhhHHHHHHH
Confidence 478888877775332 245667788999999999998877776
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0015 Score=61.89 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=83.4
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+++-|.++|++|+|||-||+++++ +....| +.+..+ ++.+..... ...+++.+.+..
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS--------ElVqKYiGE-------GaRlVRelF~lA 240 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS--------ELVQKYIGE-------GARLVRELFELA 240 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH--------HHHHHHhcc-------chHHHHHHHHHH
Confidence 4677888999999999999999998 544444 222221 222222111 123444444444
Q ss_pred c-CCeEEEEecCcccc--------C------ccchhhhccccCCCC--CCcEEEEEecchhHHHh----cC-CCCeeecC
Q 048774 121 S-GKKFLLVLDDVWNR--------N------YDDWVDFSRPLGASA--QGSKIIVSTRNHEVAKI----MG-TLPAYQLK 178 (519)
Q Consensus 121 ~-~~~~LlvlDdv~~~--------~------~~~~~~l~~~l~~~~--~~~~ilvTsr~~~~~~~----~~-~~~~~~l~ 178 (519)
+ ..+.+|.+|.++.. . +...-++...+..+. .+.|||..|...++... .+ -++.+++.
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp 320 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP 320 (406)
T ss_pred hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecC
Confidence 3 46899999998521 0 111222333333332 46788887766554321 12 23556676
Q ss_pred CCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 179 KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 179 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.-+.+.-.++|.-+...... ...-+ .+.+++.|.|.-
T Consensus 321 lPd~~gR~~Il~IHtrkM~l-~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 321 LPDEEGRAEILKIHTRKMNL-ADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCHHHHHHHHHHHhhhccC-ccCcC----HHHHHHhcCCCc
Confidence 44455556778766644332 22222 344666666655
No 160
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.53 E-value=0.0011 Score=66.10 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=78.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++.+.++|++|+|||++|+.+++ .....| +.+.. .. +..... ......+...+.....
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~--~l~~~f-----i~i~~----s~----l~~k~~------ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAH--HTTATF-----IRVVG----SE----FVQKYL------GEGPRMVRDVFRLARE 236 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----HH----HHHHhc------chhHHHHHHHHHHHHh
Confidence 456778999999999999999987 332222 12211 11 111111 1111222233333335
Q ss_pred CCeEEEEecCccccC------c----c----chhhhccccCC--CCCCcEEEEEecchhHH-Hh-c---CCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRN------Y----D----DWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KI-M---GTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~------~----~----~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~-~---~~~~~~~l~~L 180 (519)
..+.+|+||+++... . . .+..+...+.. ...+..||+||...+.. .. . .....+.+...
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 678999999985310 0 0 11112222221 12356677777654332 11 1 12355788888
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.++..++|..+...... ...- ...++++.+.|+-
T Consensus 317 ~~~~R~~Il~~~~~~~~l-~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNL-SEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCC-Cccc----CHHHHHHHcCCCC
Confidence 888888888866533221 1111 2345666666654
No 161
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.52 E-value=0.00011 Score=71.62 Aligned_cols=136 Identities=20% Similarity=0.159 Sum_probs=88.2
Q ss_pred CCeEEEEEEecCCccchhhhhhhcC---CCCceecccccccCCCCCCCchhhhhhccC-CcccEEeecCcccc-----cc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDI---QHLRTFLPVMLSNSLDGYLAPSILTELFKL-QRLRIFSLRGYHIS-----EL 444 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-----~l 444 (519)
..++.+.+........ ....+..+ ++|+.|.+..+.. ...-...+...+..+ ++|+.|++++|.++ .+
T Consensus 81 ~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 81 CGLQELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGL--GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred CceeEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCcc--chHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 4566666654433311 11223333 3488877766541 100112333445566 89999999999887 33
Q ss_pred CccccCCCcCcEEeccCCCCc-----ccCcchhcCCCCcEEeccCCCch----hHhHHhhcccccCCEEEccCCCCCC
Q 048774 445 PDSVGDLRYLRHLNLSRTEIK-----TLPESVSKLYNLHTLLLEDCRRL----KKLCAAMGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 445 p~~~~~l~~L~~l~l~~~~i~-----~lp~~~~~l~~L~~l~l~~~~~~----~~lp~~~~~l~~L~~l~l~~~~~l~ 513 (519)
+..+..+.+|+.|++++|.++ .++..+...++|+.|++++|... ..++..+.++++|++|++++|. ++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cc
Confidence 445667788999999999887 24445566679999999998432 2355567788999999999997 44
No 162
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0023 Score=61.63 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=63.8
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhcC-CCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIMG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
++.-++|+|+++.........+...+....+++.+|++|.+. .+...+. ....+.+.+++.++..+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 455688899998777666667777777766778877777664 3333322 246789999999999988887531
Q ss_pred CCCchHHHHHHHHHHhhCCCch
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.. ...+...++.++|.|.
T Consensus 181 ~~----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 181 AE----ISEILTALRINYGRPL 198 (325)
T ss_pred cC----hHHHHHHHHHcCCCHH
Confidence 11 2235667888999995
No 163
>PRK08181 transposase; Validated
Probab=97.51 E-value=0.00026 Score=66.37 Aligned_cols=102 Identities=20% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++|+|++|+|||.||..+.+ ........++|++. .++...+.... .....+..... +.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~------~~~~~~~~l~~----l~- 166 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVAR------RELQLESAIAK----LD- 166 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHH------hCCcHHHHHHH----Hh-
Confidence 34578999999999999999987 33333334555543 33444443221 11222222222 22
Q ss_pred CeEEEEecCccccCccch--hhhccccCCCCCCcEEEEEecch
Q 048774 123 KKFLLVLDDVWNRNYDDW--VDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~--~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
+.=||||||+.......+ ..+...+...-.+..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 234999999954322221 12222222111123588888753
No 164
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0012 Score=64.30 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhc-CCCCeeecCCCChhhHHHHHHHh
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIM-GTLPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 192 (519)
+.+-++|+|+++..+......+...+.....++.+|++|.+. .+...+ .....+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 445689999997766555666777777666678777777653 233222 22467899999999998888653
No 165
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.50 E-value=8.6e-06 Score=77.24 Aligned_cols=98 Identities=29% Similarity=0.318 Sum_probs=72.5
Q ss_pred chhhhhhc-cCCcccEEeecCcccccc-CccccCCCcCcEEeccC-CCCcccCc-chhcCCCCcEEeccCCCchhHhHHh
Q 048774 419 PSILTELF-KLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSR-TEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAA 494 (519)
Q Consensus 419 ~~~~~~~~-~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~-~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~ 494 (519)
..+|+..+ .+++||.||++.|.|+++ |..+.+++.|-.|-+.+ |+|+.+|. .|+.|..|+.|.+.-|.........
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 44555555 888999999999998876 77788888877766665 88888886 4677888888888777444445556
Q ss_pred hcccccCCEEEccCCCCCCCCCC
Q 048774 495 MGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 495 ~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+..|++|..|.+-.|. +..++.
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~ 181 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICK 181 (498)
T ss_pred HHHhhhcchhcccchh-hhhhcc
Confidence 8888888888777776 666654
No 166
>PRK06526 transposase; Provisional
Probab=97.49 E-value=0.00023 Score=66.34 Aligned_cols=23 Identities=39% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|+|++|+|||+||..+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 45678999999999999999877
No 167
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.46 E-value=0.00074 Score=65.51 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=57.0
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-Cc-eEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHH-H---HH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DL-KAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLN-K---LQ 113 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~-~---~~ 113 (519)
+..+..+|+|++|+|||||++.+++ .+..+. +. ++|+.+++. .+..++.+.+...+..+......... . ..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~ 208 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELV 208 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHH
Confidence 3456668999999999999999887 444333 33 467677665 46778888887766654321111110 1 11
Q ss_pred HHHHHHh--cCCeEEEEecCc
Q 048774 114 EELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 114 ~~l~~~l--~~~~~LlvlDdv 132 (519)
..+.+.+ .+++++||+|++
T Consensus 209 ~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 209 LERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHcCCCEEEEEeCc
Confidence 1112222 579999999999
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0027 Score=61.05 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=63.2
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhcC-CCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIMG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
+..-++|||+++.........+...+....+++.+|++|.+. .+...+. ....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 345689999998777666666777777666677777666654 4443332 34678999999999999887531 1
Q ss_pred CCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
. .+..+++.++|.|+....
T Consensus 182 -~------~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 182 -T------VPAYALKLNMGSPLKTLA 200 (319)
T ss_pred -c------hHHHHHHHcCCCHHHHHH
Confidence 1 134578899999985543
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.0021 Score=66.68 Aligned_cols=153 Identities=11% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-++++|++|+|||++|+.+++. ....| +.+.. ..+. ... .......+...+.....
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~i~~----~~~~----~~~------~g~~~~~l~~~f~~a~~ 145 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISG----SDFV----EMF------VGVGASRVRDLFEQAKK 145 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----eeccH----HHHH----HHH------hcccHHHHHHHHHHHHh
Confidence 3455779999999999999999872 22222 22211 1111 111 01122233334444445
Q ss_pred CCeEEEEecCccccCc----------cc----hhhhccccCC--CCCCcEEEEEecchh-HHHhc----CCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY----------DD----WVDFSRPLGA--SAQGSKIIVSTRNHE-VAKIM----GTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~----------~~----~~~l~~~l~~--~~~~~~ilvTsr~~~-~~~~~----~~~~~~~l~~L 180 (519)
..+.+|+||+++.... .. ...+...+.. ...+..||.||.... +...+ .....+.+...
T Consensus 146 ~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence 6788999999953210 00 1111111111 112344555554432 11111 12356788888
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.++-.++|..+...... .. ......+++.+.|+-
T Consensus 226 d~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 226 DIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGFS 260 (495)
T ss_pred CHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCCC
Confidence 888888888877643221 11 223456777777754
No 170
>PRK09183 transposase/IS protein; Provisional
Probab=97.41 E-value=0.00057 Score=64.11 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=20.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|+|++|+|||+||..+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45677999999999999999876
No 171
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=5e-05 Score=73.15 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=42.2
Q ss_pred CCcccEEeecCccccccC--ccccCCCcCcEEeccCCCCc--ccCcc-----hhcCCCCcEEeccCCCchhHhHH--hhc
Q 048774 428 LQRLRIFSLRGYHISELP--DSVGDLRYLRHLNLSRTEIK--TLPES-----VSKLYNLHTLLLEDCRRLKKLCA--AMG 496 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~l~l~~~~i~--~lp~~-----~~~l~~L~~l~l~~~~~~~~lp~--~~~ 496 (519)
+..|+.|++++|.+-.++ .-++.++.|..|+++.|+|. ..|+- ....++|++|++..| .+.+.+. .+.
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR 323 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhh
Confidence 444666666666555444 34555666666666666655 22322 234456666666665 3433322 233
Q ss_pred ccccCCEEEccCCC
Q 048774 497 NLIKLHHLNNSNTD 510 (519)
Q Consensus 497 ~l~~L~~l~l~~~~ 510 (519)
.+.+|++|++..|.
T Consensus 324 ~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 324 TLENLKHLRITLNY 337 (505)
T ss_pred ccchhhhhhccccc
Confidence 44455555554443
No 172
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.40 E-value=0.00092 Score=68.20 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++|++|+|||.+|+.+++ ...-.| +-++.+. +.... -..+...+...+...-.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~~----------l~~~~------vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVGK----------LFGGI------VGESESRMRQMIRIAEA 316 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhHH----------hcccc------cChHHHHHHHHHHHHHh
Confidence 456778999999999999999987 322222 1222211 11100 01111222223332234
Q ss_pred CCeEEEEecCccccCc-----cc-------hhhhccccCCCCCCcEEEEEecchhH-HHhc----CCCCeeecCCCChhh
Q 048774 122 GKKFLLVLDDVWNRNY-----DD-------WVDFSRPLGASAQGSKIIVSTRNHEV-AKIM----GTLPAYQLKKLSYND 184 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~-----~~-------~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~L~~~e 184 (519)
..+++|+||+++..-. .+ ...+...+.....+.-||.||.+... ...+ ..+..+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 5789999999963210 00 11112222222233445556654332 1111 224567788888888
Q ss_pred HHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 185 CLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 185 a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
-.++|..+.......... ......+++.+.|+-
T Consensus 397 R~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 889998876443211100 122455666666655
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0019 Score=65.28 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=47.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
+++-+.+|||+|+|||.||++++++. .-. ++.+..+ +++..+ ..++.+.+.+...+.-.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel--~vP-----f~~isAp--------eivSGv------SGESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGEL--GVP-----FLSISAP--------EIVSGV------SGESEKKIRELFDQAKS 280 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhc--CCc-----eEeecch--------hhhccc------CcccHHHHHHHHHHHhc
Confidence 56777899999999999999999832 222 2333322 222222 33344555555556666
Q ss_pred CCeEEEEecCcc
Q 048774 122 GKKFLLVLDDVW 133 (519)
Q Consensus 122 ~~~~LlvlDdv~ 133 (519)
.-+++++||+++
T Consensus 281 ~aPcivFiDeID 292 (802)
T KOG0733|consen 281 NAPCIVFIDEID 292 (802)
T ss_pred cCCeEEEeeccc
Confidence 789999999995
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.39 E-value=0.0034 Score=57.01 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=64.5
Q ss_pred cccccceeeeEeecC----CCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAAS----PEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTI 94 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~----~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 94 (519)
+..+|-|+..+.|.. .+. +.+..-+.++|..|+|||++++++.+ .+... +.--|.+.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~---G~pannvLL~G~rGtGKSSlVkall~--~y~~~--GLRlIev~k~---------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQ---GLPANNVLLWGARGTGKSSLVKALLN--EYADQ--GLRLIEVSKE---------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc---CCCCcceEEecCCCCCHHHHHHHHHH--HHhhc--CceEEEECHH----------
Confidence 445665555444433 122 23455667899999999999999987 33332 1222333321
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCcc-ccCccchhhhccccC----CCCCCcEEEEEecchhH
Q 048774 95 LTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVW-NRNYDDWVDFSRPLG----ASAQGSKIIVSTRNHEV 165 (519)
Q Consensus 95 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~-~~~~~~~~~l~~~l~----~~~~~~~ilvTsr~~~~ 165 (519)
...++..+.+.++. +..+++|.+||+. +.....+..+...+. ....+..|..||..+.+
T Consensus 90 ----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 22233333444432 3578999999983 222334444443332 23345666677766554
No 175
>PRK12377 putative replication protein; Provisional
Probab=97.38 E-value=0.00054 Score=63.42 Aligned_cols=38 Identities=29% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
...++|+|++|+|||.||.++++ ........++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH
Confidence 35678999999999999999998 444444445665543
No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.38 E-value=0.00055 Score=63.10 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=32.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVI 88 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 88 (519)
...++.|+|++|+|||++|.+++. .....-..++|++.. ..+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~ 65 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPE 65 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHH
Confidence 345667999999999999999887 333344678899887 44433
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=97.38 E-value=0.0022 Score=67.73 Aligned_cols=152 Identities=13% Similarity=0.168 Sum_probs=80.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
++-++++|++|+|||++|+.++.. .... ++.++.. ++.. .. ...........+......
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~f~~----~~------~g~~~~~vr~lF~~A~~~ 274 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----EFVE----MF------VGVGAARVRDLFKKAKEN 274 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----HHHH----Hh------hhhhHHHHHHHHHHHhcC
Confidence 456789999999999999999872 2211 2222211 1110 00 001122333444455567
Q ss_pred CeEEEEecCccccC----------c----cchhhhccccCC--CCCCcEEEEEecchhHH-Hhc----CCCCeeecCCCC
Q 048774 123 KKFLLVLDDVWNRN----------Y----DDWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KIM----GTLPAYQLKKLS 181 (519)
Q Consensus 123 ~~~LlvlDdv~~~~----------~----~~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~~----~~~~~~~l~~L~ 181 (519)
.+++|+||+++... . ..+..+...+.. ...+..+|.||...+.. ..+ .....+.+...+
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 88999999995321 0 011122222211 12344555555553322 111 123567888888
Q ss_pred hhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 182 YNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 182 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.++-.+++..++..... . .......+++.+.|..
T Consensus 355 ~~~R~~IL~~~l~~~~~-~----~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 355 REGRLDILKVHARNKKL-S----PDVSLELIARRTPGFS 388 (638)
T ss_pred HHHHHHHHHHHHhhccc-c----hhHHHHHHHhcCCCCC
Confidence 88888999887643111 1 1334566777777743
No 178
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.37 E-value=0.0023 Score=60.38 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=28.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRL 90 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 90 (519)
...+.|.|++|+|||++|+.+++ .... ..+.+++.......++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 35667999999999999999986 3222 3445555554444333
No 179
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=0.00025 Score=62.39 Aligned_cols=37 Identities=22% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
...++|+|++|+|||.||..+.+. ...+=..+.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec
Confidence 456889999999999999999873 2222234556553
No 180
>PRK04296 thymidine kinase; Provisional
Probab=97.36 E-value=0.00028 Score=63.01 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=60.5
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC-CCCCHHHHHHHHHHHhcC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV-DNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 122 (519)
.+.+|+|+.|+||||+|..++. +...+-..++.+.- ..+.......++.+++..... .....++....+.. ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4667999999999999988877 44434333444421 111111122344444322211 12334445555544 333
Q ss_pred CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
+.-+||+|.++-.+..+..++...+. ..|..|++|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 44599999995433222333333322 3478899998874
No 181
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.35 E-value=0.00057 Score=63.47 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ 89 (519)
...++.|+|++|+|||++|..++........ -..++|++.........
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~r 69 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPER 69 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHH
Confidence 4567779999999999999988742111221 35789999877655443
No 182
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.35 E-value=0.00078 Score=60.23 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCC--CCCCCHHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQN--VDNLNLNKLQEELNKQ 119 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~l~~~ 119 (519)
+++++++|+.|+||||.+..++. ..+.+-..+..++.... ....+.++...+.++.+.. ....+.........+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 35778999999999998888877 33433346677777654 3556677777888876642 1233444444333333
Q ss_pred hcCCe-EEEEecCcc
Q 048774 120 LSGKK-FLLVLDDVW 133 (519)
Q Consensus 120 l~~~~-~LlvlDdv~ 133 (519)
++.++ =++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 33333 378888763
No 183
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.35 E-value=0.00098 Score=68.39 Aligned_cols=212 Identities=11% Similarity=0.061 Sum_probs=116.9
Q ss_pred cccccccceeeeEeecCCCCCCCC--CCCCeEEEEecCCchHHHHHHHHhCChh---hhcCCC--ceEEEEEcCCCCHHH
Q 048774 17 AHDVFPCRKQAFIWAASPEETMPE--WPEPMHVFAGFGGLGKTTLARLAYNDDR---VQNHFD--LKAWTCVSDDFDVIR 89 (519)
Q Consensus 17 ~~~~f~gR~~~~~~l~~~~~~~~~--~~~~~~~I~G~~G~GKTtLa~~~~~~~~---~~~~f~--~~~wv~~~~~~~~~~ 89 (519)
......+||.|...+.+.+...-. +....+.|+|.+|+|||+.+..+.+... -++.-+ ..+.++.-+-.+..+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 556778999988877665433222 2334666999999999999999987421 112222 344566666678899
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHH-HHhcCCeEEEEecCccccCccchhhhccccCCC-CCCcEEEEEecc--hhH
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELN-KQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS-AQGSKIIVSTRN--HEV 165 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr~--~~~ 165 (519)
++..|..++..........++.+..... ..-+.+..++++|+++..-....+.+...+.+. .+++|++|.+=- .+.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 9999999887765433333333332222 111345789999998432111112222333322 256665554321 111
Q ss_pred HHh-cC-------CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhh
Q 048774 166 AKI-MG-------TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGL 229 (519)
Q Consensus 166 ~~~-~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 229 (519)
.+. +. ....+..++.++++-.++...+...... ......+-.++.|+.-.|-.-.|+.+..++
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111 11 1245778888888888888777643311 122222334455555555555555544433
No 184
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.34 E-value=0.00029 Score=62.79 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC----C-----CHHHH----HHHHHHHhhccCCCCCCCH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD----F-----DVIRL----TKTILTSIVTHQNVDNLNL 109 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~----~-----~~~~~----~~~il~~l~~~~~~~~~~~ 109 (519)
.+++++.|++|+|||.||.+.+.+.-..+.|+.++++.-.-. . +..+- ...+...+..-. .....
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~--~~~~~ 96 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF--GKEKL 96 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS---TTCH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh--ChHhH
Confidence 468889999999999999887765445577887777642211 0 11111 111111111110 11122
Q ss_pred HHHHHHH------HHHhcCC---eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 110 NKLQEEL------NKQLSGK---KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 110 ~~~~~~l------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
+.....- ...++++ +.++|+|++++.+..++..+... .+.+||++++--..
T Consensus 97 ~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 97 EELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 2221100 1123443 56999999988776666655444 45699999987543
No 185
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.00067 Score=61.74 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=33.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRL 90 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 90 (519)
...++.|+|++|+|||++|.+++. .....-..++|++... .+...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl 56 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERF 56 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHH
Confidence 345666999999999999998876 3334446789999875 444433
No 186
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0011 Score=64.46 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=60.2
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
++.-++|||+++.........+...+....+++.+|++|.+ ..+...+ .....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~------ 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG------ 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC------
Confidence 34558899999887766677777777766667766655554 4444332 224678999999999999887641
Q ss_pred CCCchHHHHHHHHHHhhCCCchh
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
.. + ...++..++|.|..
T Consensus 205 ~~----~--~~~~l~~~~Gsp~~ 221 (342)
T PRK06964 205 VA----D--ADALLAEAGGAPLA 221 (342)
T ss_pred CC----h--HHHHHHHcCCCHHH
Confidence 11 1 12357788999963
No 187
>PRK06921 hypothetical protein; Provisional
Probab=97.29 E-value=0.00096 Score=62.78 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEE
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCV 81 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~ 81 (519)
....++++|++|+|||.||.++++ ....+ -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 356788999999999999999998 43333 344566664
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.29 E-value=0.0015 Score=56.56 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=64.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhh------------------cCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQ------------------NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV 104 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 104 (519)
++..+++|+.|+||+++|..+++..--. ....-..|+.-....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~------------------- 79 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK------------------- 79 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-------------------
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-------------------
Confidence 4566799999999999998877621100 111222333222110
Q ss_pred CCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHhc-CCCCeeec
Q 048774 105 DNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKIM-GTLPAYQL 177 (519)
Q Consensus 105 ~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~~-~~~~~~~l 177 (519)
..-..++.. .+...+ .++.-++|||+++.........+...+.....++.+|++|++.. +...+ .....+.+
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 012233333 333332 23566999999988877777778877777777899998888754 22222 22344555
Q ss_pred CCC
Q 048774 178 KKL 180 (519)
Q Consensus 178 ~~L 180 (519)
.++
T Consensus 159 ~~l 161 (162)
T PF13177_consen 159 RPL 161 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 189
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.28 E-value=0.00055 Score=64.03 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=36.0
Q ss_pred CCeEE-EEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 43 EPMHV-FAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 43 ~~~~~-I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
.+.+. |+|++|+|||+|+..++-...+... =..++|++-...++...+. +|+++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 34455 9999999999999877542222221 2468999988877766554 345443
No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.00016 Score=79.08 Aligned_cols=143 Identities=14% Similarity=0.060 Sum_probs=73.5
Q ss_pred hhhhhccccccccceeeeEeecCCCCC------CCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 11 DALEAAAHDVFPCRKQAFIWAASPEET------MPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 11 ~~l~~~~~~~f~gR~~~~~~l~~~~~~------~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
..|+.......+|-++.+..+.+.+.. .+..+..++.++|++|+|||.+|+.++. ...+.....+-++++..
T Consensus 558 ~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~ 635 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEF 635 (852)
T ss_pred HHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHh
Confidence 345666677778888888777664321 1222223566999999999999998876 33222222333333321
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC-CeEEEEecCccccCccchhhhccccCCCC-----------C
Q 048774 85 FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG-KKFLLVLDDVWNRNYDDWVDFSRPLGASA-----------Q 152 (519)
Q Consensus 85 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~ 152 (519)
... .-...+....+..... ++ ...+.+.++. ..-+|+||+++..++..+..+...+.... .
T Consensus 636 ~~~-----~~~~~l~g~~~gyvg~-~~-~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 636 QEA-----HTVSRLKGSPPGYVGY-GE-GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred hhh-----hhhccccCCCCCcccc-cc-cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 110 0111222221111100 00 0112233333 34599999998777655555544443221 3
Q ss_pred CcEEEEEecc
Q 048774 153 GSKIIVSTRN 162 (519)
Q Consensus 153 ~~~ilvTsr~ 162 (519)
++-||+||.-
T Consensus 709 n~iiI~TSNl 718 (852)
T TIGR03345 709 NTVILLTSNA 718 (852)
T ss_pred ccEEEEeCCC
Confidence 5557777654
No 191
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.27 E-value=0.00011 Score=74.10 Aligned_cols=103 Identities=27% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcE
Q 048774 400 HLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHT 479 (519)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~ 479 (519)
+++.|.+..+. ..+.|..+..++.|+.|+++.|.+.++|...+.++.|+.|++++|.+..+|..+..+..|+.
T Consensus 141 nL~~L~l~~N~-------i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNK-------IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred hcccccccccc-------hhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence 56655554443 23333556677788888888888877777666777788888888888877777666666778
Q ss_pred EeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 480 LLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 480 l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
+.+++| .....+..+.++.++..+.+.+|.
T Consensus 214 l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 214 LDLSNN-SIIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhcCC-cceecchhhhhcccccccccCCce
Confidence 777776 344455557777777777776665
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=0.00022 Score=75.85 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.2
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccC--cchhc
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLP--ESVSK 473 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp--~~~~~ 473 (519)
.++.|++|.+.+-. +.......++ ++++|..||+|+++++.+ ..++.|++|+.|.+++-.+..-+ ..+..
T Consensus 146 ~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 47888888776654 2233344455 899999999999999887 67889999999988876665322 35667
Q ss_pred CCCCcEEeccCCCchhH------hHHhhcccccCCEEEccCCC
Q 048774 474 LYNLHTLLLEDCRRLKK------LCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~------lp~~~~~l~~L~~l~l~~~~ 510 (519)
|++|++||+|....... .-+.-..|+.|+.||.|++.
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 89999999987533221 12223458899999998765
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.00088 Score=61.85 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK 123 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (519)
..++++|.+|+|||+||.++++ .....-..++++++ .++...+-..... .....+. +.+.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~~----~~~~~~~----~l~~l~~- 162 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFSN----SETSEEQ----LLNDLSN- 162 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHhh----ccccHHH----HHHHhcc-
Confidence 4678999999999999999998 33333345555543 3333333322211 1112222 2233442
Q ss_pred eEEEEecCccccCccchh
Q 048774 124 KFLLVLDDVWNRNYDDWV 141 (519)
Q Consensus 124 ~~LlvlDdv~~~~~~~~~ 141 (519)
.=+|||||+......+|.
T Consensus 163 ~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYE 180 (244)
T ss_pred CCEEEEeCCCCCCCCHHH
Confidence 338888999654444444
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.25 E-value=0.0035 Score=60.39 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+..++|+|++|+|||.+|+.+++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHH
Confidence 456777999999999999999998
No 195
>PRK04132 replication factor C small subunit; Provisional
Probab=97.25 E-value=0.0042 Score=67.08 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=95.5
Q ss_pred EEe--cCCchHHHHHHHHhCChhhhcCC-CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCe
Q 048774 48 FAG--FGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKK 124 (519)
Q Consensus 48 I~G--~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 124 (519)
+.| |.++||||+|..++++. ..+.+ ..++-++.+...+.. ..+.++.......+. -..+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCC
Confidence 568 88999999999999831 12222 234555555433333 334444333222110 01235
Q ss_pred EEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHhc-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCC
Q 048774 125 FLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKIM-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSH 202 (519)
Q Consensus 125 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 202 (519)
-++|||+++..+......+...+......+++|+++.+.. +...+ .....+++.+++.++-...+.+.+...+...+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~- 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT- 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-
Confidence 6999999988776666667777666556788887776643 22221 22467899999999988888776543222111
Q ss_pred chHHHHHHHHHHhhCCCchh
Q 048774 203 MSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 203 ~~~~~~~~~i~~~~~g~PLa 222 (519)
++....|++.++|.+..
T Consensus 711 ---~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 711 ---EEGLQAILYIAEGDMRR 727 (846)
T ss_pred ---HHHHHHHHHHcCCCHHH
Confidence 56788899999998843
No 196
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00054 Score=59.68 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=25.3
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhh-cCCCceEE
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAW 78 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 78 (519)
.++|+|++|+||||||+.+++...+. -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 46799999999999999999843222 34555665
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.24 E-value=0.0064 Score=59.72 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=105.9
Q ss_pred CCCCeEEEEecCCchHHHHH-HHHhCChhhhcCCCceEEEEEcCCC---CHHHHHHHHHHHhhc----------------
Q 048774 41 WPEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFDLKAWTCVSDDF---DVIRLTKTILTSIVT---------------- 100 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~il~~l~~---------------- 100 (519)
...-+++|+||.|+||+.|+ .++.++. ..+..++|..-. +-..++..++.+++-
T Consensus 15 ~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~IDL 88 (431)
T PF10443_consen 15 NPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFIDL 88 (431)
T ss_pred CCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 34578999999999999999 6666532 236666655332 233444444444432
Q ss_pred -------cCCCCCCCHHHHHHHHHHH----h-----------------c---------CCeEEEEecCccccCc------
Q 048774 101 -------HQNVDNLNLNKLQEELNKQ----L-----------------S---------GKKFLLVLDDVWNRNY------ 137 (519)
Q Consensus 101 -------~~~~~~~~~~~~~~~l~~~----l-----------------~---------~~~~LlvlDdv~~~~~------ 137 (519)
....-..+.+.....+... | + .++-++||||+.....
T Consensus 89 a~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy 168 (431)
T PF10443_consen 89 AVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFIY 168 (431)
T ss_pred HHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchHH
Confidence 1111122333222211111 1 0 1255899999843221
Q ss_pred ---cchhhhccccCCCCCCcEEEEEecchhHHH----hcC--CCCeeecCCCChhhHHHHHHHhhhCCCCC---------
Q 048774 138 ---DDWVDFSRPLGASAQGSKIIVSTRNHEVAK----IMG--TLPAYQLKKLSYNDCLAIFAQHSLGTRDF--------- 199 (519)
Q Consensus 138 ---~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~----~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~--------- 199 (519)
.+|...... .+-.+||++|.+..... .++ ....+.|...+.+.|..+...+.......
T Consensus 169 ~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~ 244 (431)
T PF10443_consen 169 DKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNE 244 (431)
T ss_pred HHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccc
Confidence 223222111 23457888887754433 332 34678899999999999998887543111
Q ss_pred ---CCC----chHHHHHHHHHHhhCCCchhHHHHhhhccCCCCH
Q 048774 200 ---SSH----MSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDR 236 (519)
Q Consensus 200 ---~~~----~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~ 236 (519)
... ..........+...||=-.=|+.+++.++...++
T Consensus 245 ~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 245 QNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 000 1223445667788889888899888888876444
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.23 E-value=0.001 Score=63.90 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=55.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.+.++|+|+.|+|||.||.++++. ....-..+.++.+. .++..+-..... .+... .+.. ++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~------~~~~~---~l~~-l~- 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISD------GSVKE---KIDA-VK- 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhc------CcHHH---HHHH-hc-
Confidence 457789999999999999999984 33322334555443 344444333321 11222 2222 22
Q ss_pred CeEEEEecCccccCccchhh--hcccc-CCC-CCCcEEEEEecc
Q 048774 123 KKFLLVLDDVWNRNYDDWVD--FSRPL-GAS-AQGSKIIVSTRN 162 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~--l~~~l-~~~-~~~~~ilvTsr~ 162 (519)
+-=||||||+.......|.. +...+ ... ..+..+++||.-
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 34489999996544444542 33333 211 234557777753
No 199
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.20 E-value=0.0023 Score=62.60 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=21.8
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+-+++|.|.=|+|||++.+.+.+
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777999999999999999887
No 200
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.19 E-value=0.001 Score=72.21 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred hhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
.++.......+|-++.++.+...+... ++.+...+.++|++|+|||.||+.+++ .. +...+.++++...
T Consensus 447 ~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~ 521 (731)
T TIGR02639 447 NLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYM 521 (731)
T ss_pred HHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhh
Confidence 455556666678888777666543311 111223456999999999999999987 33 2334555554422
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-eEEEEecCccccCccchhhhcccc
Q 048774 86 DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK-KFLLVLDDVWNRNYDDWVDFSRPL 147 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l 147 (519)
+... ...+....+ .....+. ...+.+.++.+ .-+++||+++..+...+..+...+
T Consensus 522 ~~~~-----~~~lig~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 522 EKHT-----VSRLIGAPP-GYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred hccc-----HHHHhcCCC-CCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 1111 111111111 1111111 12233333333 359999999877665555444443
No 201
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.19 E-value=0.0004 Score=76.51 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=67.6
Q ss_pred hhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
.|+.......+|.+..+..+...+... +..+...+.++|++|+|||++|+.+.. .....-...+.++++...
T Consensus 558 ~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhc
Confidence 344555566789999888887765432 111223566999999999999999987 322222334444544322
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCe-EEEEecCccccCccchhhhcccc
Q 048774 86 DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKK-FLLVLDDVWNRNYDDWVDFSRPL 147 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l~~~l 147 (519)
... ....+....+ ....-++ ...+...++.++ .+|+||+++..++..+..+...+
T Consensus 636 ~~~-----~~~~l~g~~~-g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 636 EKH-----SVARLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred ccc-----hHHHhcCCCC-CccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 211 1112222211 1101100 112222232333 48999999877766655555544
No 202
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.15 E-value=0.0008 Score=59.35 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC 80 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 80 (519)
++.+++|.|++|+||||+|+.+++ .....+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456888999999999999999998 5655666666654
No 203
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.14 E-value=0.00026 Score=59.71 Aligned_cols=41 Identities=29% Similarity=0.178 Sum_probs=28.1
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHH
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 91 (519)
|+|+|++|+|||+||+.+++ .... ...-+.+....+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccce
Confidence 57999999999999999987 4311 23345666665655544
No 204
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0046 Score=59.93 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=43.8
Q ss_pred CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHhcC-CCCeeecCCCChhhHHHHHHHh
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKIMG-TLPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~~~-~~~~~~l~~L~~~ea~~L~~~~ 192 (519)
++-++|+|+++..+......+...+.....++.+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 334556788876665555555555544434566777776643 333322 2367889999999998888653
No 205
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0026 Score=58.63 Aligned_cols=88 Identities=19% Similarity=0.104 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC------CceEEEEEcCCCCHHHHHHHHHHHhhccC--------CCCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------DLKAWTCVSDDFDVIRLTKTILTSIVTHQ--------NVDNL 107 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~ 107 (519)
...++.|+|++|+|||+||..++.. ....- ..++|++.....+...+. .+........ -....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 4567779999999999999988762 22222 567898887765544333 3333221110 01223
Q ss_pred CHHHHHHHHHHHhc----CCeEEEEecCc
Q 048774 108 NLNKLQEELNKQLS----GKKFLLVLDDV 132 (519)
Q Consensus 108 ~~~~~~~~l~~~l~----~~~~LlvlDdv 132 (519)
+.++....+..... .+.-|+|+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 45555555554432 34458999998
No 206
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.13 E-value=0.00064 Score=71.19 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.8
Q ss_pred cccceeeeEeecCCCCCCC--CCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 21 FPCRKQAFIWAASPEETMP--EWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~--~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.++.+..+...+.... ....++++|+|++|+||||+++.+++
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566665555544333221 22446788999999999999999987
No 207
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.12 E-value=0.0049 Score=53.21 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEecCcc-ccCc-cchhh--hccccCCCCCCcEEEEEecchhHHHhcC
Q 048774 107 LNLNKLQEELNKQLSGKKFLLVLDDVW-NRNY-DDWVD--FSRPLGASAQGSKIIVSTRNHEVAKIMG 170 (519)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~-~~~~-~~~~~--l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 170 (519)
...++..-.+.+.+-+++-+++-|.-- +.++ ..|+. +...++ ..|+.||++|-+..+...+.
T Consensus 139 SGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 139 SGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 444555666777888899999999752 1121 22322 222333 35999999999998877654
No 208
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.11 E-value=0.00096 Score=63.96 Aligned_cols=83 Identities=19% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC----CCCCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ----NVDNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~----~~~~~~~~~~~~~l~~ 118 (519)
.+++.|+|++|+||||||..++. .....-..++|++.....+.. .+.+++... -..+.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 44666999999999999998876 333444578899887765542 222232211 0123345666666655
Q ss_pred HhcC-CeEEEEecCc
Q 048774 119 QLSG-KKFLLVLDDV 132 (519)
Q Consensus 119 ~l~~-~~~LlvlDdv 132 (519)
..+. ..-++|+|.+
T Consensus 128 li~s~~~~lIVIDSv 142 (325)
T cd00983 128 LVRSGAVDLIVVDSV 142 (325)
T ss_pred HHhccCCCEEEEcch
Confidence 5544 4569999998
No 209
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0014 Score=61.14 Aligned_cols=81 Identities=11% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh--cCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ--NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
-++++.+|||+|.|||+|.+++++...++ +.|....-+.+... .+++.+... ...-+..+-+.+.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE---SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE---SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh---hhhHHHHHHHHHHHH
Confidence 35788899999999999999999865443 44544444444322 223333222 122233444555566
Q ss_pred hcCCe--EEEEecCcc
Q 048774 120 LSGKK--FLLVLDDVW 133 (519)
Q Consensus 120 l~~~~--~LlvlDdv~ 133 (519)
+.++. +.+.+|.|.
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 65554 355689984
No 210
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.08 E-value=0.0016 Score=59.63 Aligned_cols=42 Identities=17% Similarity=0.006 Sum_probs=30.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
...++.|+|++|+||||+|.+++. .....-..++|++.....
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 456777999999999999999886 333333467788765443
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.06 E-value=0.00074 Score=65.36 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=26.8
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
..++++|++|+|||.||.++++ .....-..+++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH
Confidence 6688999999999999999998 33333334556554
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.05 E-value=0.00057 Score=75.09 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=67.3
Q ss_pred hhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
.|+......++|.+..+..+...+... ++.+..+++++|+.|+|||++|+.+++ .....-...+.++++...
T Consensus 561 ~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred HHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhh
Confidence 456666677789998877776654321 111223567999999999999999886 322222233444444321
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCe-EEEEecCccccCccchhhhcccc
Q 048774 86 DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKK-FLLVLDDVWNRNYDDWVDFSRPL 147 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l~~~l 147 (519)
. . .....+....+ .....+. ...+...++.++ -+|+||++...+...+..+...+
T Consensus 639 ~-~----~~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 639 E-K----HSVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred h-h----hhHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1 1 11222222221 1111111 112233333333 59999999776655555554444
No 213
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.05 E-value=0.00019 Score=68.39 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=63.2
Q ss_pred hccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHhhcccccCC
Q 048774 425 LFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLH 502 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~ 502 (519)
+..+++|+.|++++|.++.+ +.++..+..++.|.+..|++..+-. -|..+..|++|+|.+|+....-|-.|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 34788888888888888866 5677888888888888888774433 355677788888888744444566677888888
Q ss_pred EEEccCCC
Q 048774 503 HLNNSNTD 510 (519)
Q Consensus 503 ~l~l~~~~ 510 (519)
.|++-.|+
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 88877665
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.00039 Score=57.03 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 215
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.03 E-value=0.0012 Score=63.34 Aligned_cols=85 Identities=19% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC----CCCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ----NVDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~----~~~~~~~~~~~~~l~ 117 (519)
..+++.|+|++|+||||||..++. .....-..++|++.....+.. .+.+++... ...+...++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 345666999999999999988776 333334567788877655442 233332211 012345566666665
Q ss_pred HHhc-CCeEEEEecCcc
Q 048774 118 KQLS-GKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~-~~~~LlvlDdv~ 133 (519)
...+ +..-++|+|.+.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 356699999983
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.01 E-value=0.0034 Score=54.31 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=28.7
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
++|+|++|+|||+++..+.. .....-..++|++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 56999999999999999987 333333567787776553
No 217
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.01 E-value=0.0017 Score=67.01 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=50.4
Q ss_pred CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 40 EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 40 ~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
....++..++|++|.||||||.-+++ +..| .++=++.+...+...+-..|...+..+....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAk----qaGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------- 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAK----QAGY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------- 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHH----hcCc-eEEEecccccccHHHHHHHHHHHHhhccccc--------------
Confidence 34567888999999999999999886 2233 3555666665555555555555544443200
Q ss_pred hcCCeEEEEecCccccC
Q 048774 120 LSGKKFLLVLDDVWNRN 136 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~ 136 (519)
..+++.-+|+|.++-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 02577788999886443
No 218
>PRK07261 topology modulation protein; Provisional
Probab=97.01 E-value=0.0023 Score=55.96 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.8
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999999876
No 219
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.01 E-value=0.0028 Score=54.08 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=62.3
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC---CCHHHHHHHHHHHhh-----ccCCCCCCCHHH----
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD---FDVIRLTKTILTSIV-----THQNVDNLNLNK---- 111 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~-----~~~~~~~~~~~~---- 111 (519)
.++.|++..|.||||+|...+- +...+=..+.++-.-+. .+....++.+ ..+. ........+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4666888889999999977665 33333334555444333 2333333332 1000 000000111111
Q ss_pred ---HHHHHHHHhcCCeE-EEEecCccc---cCccchhhhccccCCCCCCcEEEEEecch
Q 048774 112 ---LQEELNKQLSGKKF-LLVLDDVWN---RNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 112 ---~~~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
.....++.+....| |+|||++-. ......+++...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22333444444444 999999832 23344555666666666678899999984
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0084 Score=61.39 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=77.4
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+++-|.++||+|+|||++|+++++ .-.-.| +.+..+ +++..+.+ +++..+.+..++.=
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vG------eSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVG------ESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcC------chHHHHHHHHHHHh
Confidence 4677888999999999999999998 444444 222221 12222211 11222222233332
Q ss_pred cCCeEEEEecCccccCc-----------cchhhhccccCCCCC-CcEEEEE--ecchhHHHh-cC---CCCeeecCCCCh
Q 048774 121 SGKKFLLVLDDVWNRNY-----------DDWVDFSRPLGASAQ-GSKIIVS--TRNHEVAKI-MG---TLPAYQLKKLSY 182 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~~~~-~~~ilvT--sr~~~~~~~-~~---~~~~~~l~~L~~ 182 (519)
.--+.++.||.++.... ..+.++...+..... +..+++. -|+..+... +. -++.+.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 34578899998853110 111222222222111 2233333 333333222 22 235566666666
Q ss_pred hhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 183 NDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 183 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.-.++|..++..... .+.-++ .+|++.+.|+.
T Consensus 605 ~aR~~Ilk~~~kkmp~-~~~vdl----~~La~~T~g~S 637 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPF-SEDVDL----EELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHHhcCCC-CccccH----HHHHHHhccCC
Confidence 6668899998865443 222233 34555555544
No 221
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.98 E-value=0.0039 Score=58.16 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=54.3
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-CceEEEEEcCCC-CHHHHHHHHHHHhhcc------CCCCCCCHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVSDDF-DVIRLTKTILTSIVTH------QNVDNLNLNKL 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~ 112 (519)
+..+-+.|.|.+|+|||+|+..+++ .++.+| +.++++-+++.. ...++...+...=... ...+.......
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3566778999999999999999998 666556 455667777664 3445555554321100 01111111111
Q ss_pred -----HHHHHHHh---cCCeEEEEecCc
Q 048774 113 -----QEELNKQL---SGKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l---~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 12233444 378999999998
No 222
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.96 E-value=0.00088 Score=65.82 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=16.0
Q ss_pred ccEEeecCc-cccccCccccCCCcCcEEeccCC-CCcccCc
Q 048774 431 LRIFSLRGY-HISELPDSVGDLRYLRHLNLSRT-EIKTLPE 469 (519)
Q Consensus 431 L~~L~l~~~-~~~~lp~~~~~l~~L~~l~l~~~-~i~~lp~ 469 (519)
|+.|.++++ .++.+|..+ ..+|++|.+++| .+..+|+
T Consensus 74 LtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 455554432 333444333 234555555544 3334443
No 223
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=0.00013 Score=74.74 Aligned_cols=85 Identities=22% Similarity=0.177 Sum_probs=55.2
Q ss_pred hhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHH--hhcccccC
Q 048774 424 ELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCA--AMGNLIKL 501 (519)
Q Consensus 424 ~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~--~~~~l~~L 501 (519)
.+..+++|+.||+++|.+..+|.--..=.+|+.|.+++|.++.+ ..+.+|.+|+.||++.| .+..+.+ -+|.|.+|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHH
Confidence 34467777777777777776664211112377777777777666 44677777888888776 4443321 26677778
Q ss_pred CEEEccCCC
Q 048774 502 HHLNNSNTD 510 (519)
Q Consensus 502 ~~l~l~~~~ 510 (519)
+.|+|.||+
T Consensus 282 ~~L~LeGNP 290 (1096)
T KOG1859|consen 282 IVLWLEGNP 290 (1096)
T ss_pred HHHhhcCCc
Confidence 888888776
No 224
>PRK09354 recA recombinase A; Provisional
Probab=96.96 E-value=0.0015 Score=63.08 Aligned_cols=84 Identities=19% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC----CCCCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ----NVDNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~----~~~~~~~~~~~~~l~~ 118 (519)
.+++-|+|++|+||||||..++. .....-..++|++.....+.. .++.++... ...+...++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 44666999999999999998876 333444678899888776643 223332211 0123345666666655
Q ss_pred HhcC-CeEEEEecCcc
Q 048774 119 QLSG-KKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~-~~~LlvlDdv~ 133 (519)
.++. ..-++|+|.+-
T Consensus 133 li~s~~~~lIVIDSva 148 (349)
T PRK09354 133 LVRSGAVDLIVVDSVA 148 (349)
T ss_pred HhhcCCCCEEEEeChh
Confidence 5544 45699999983
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0065 Score=59.37 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+++++|+|++|+||||++..++. ....+=..+..++..... ...+-++.....++.+.. ...+.+.+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHHH
Confidence 357888999999999999999886 333322245556654432 122222233333332221 2345555555554442
Q ss_pred cC-CeEEEEecCcc
Q 048774 121 SG-KKFLLVLDDVW 133 (519)
Q Consensus 121 ~~-~~~LlvlDdv~ 133 (519)
.. +.=++++|-..
T Consensus 317 ~~~~~DvVLIDTaG 330 (436)
T PRK11889 317 EEARVDYILIDTAG 330 (436)
T ss_pred hccCCCEEEEeCcc
Confidence 22 23478888874
No 226
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00048 Score=73.29 Aligned_cols=105 Identities=23% Similarity=0.294 Sum_probs=79.4
Q ss_pred CCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCcccc--ccCccccCCCcCcEEeccCCCCcccCcchhcCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHIS--ELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLY 475 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~ 475 (519)
.+|+.|.+.+.. .+....|..++ .+|+|+.|.+++-.+. ++-.-+.++++|..||+++++++.+ ..++.|+
T Consensus 122 ~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 446666665533 24556677777 8999999999987664 3334467899999999999999977 7899999
Q ss_pred CCcEEeccCCCchhHhH--HhhcccccCCEEEccCCC
Q 048774 476 NLHTLLLEDCRRLKKLC--AAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 476 ~L~~l~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~ 510 (519)
+|+.|.+.+- .+...+ ..+.+|++|++||+|...
T Consensus 196 nLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 196 NLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccc
Confidence 9999988764 333322 357899999999999765
No 227
>PRK06696 uridine kinase; Validated
Probab=96.91 E-value=0.00024 Score=65.34 Aligned_cols=42 Identities=26% Similarity=0.072 Sum_probs=29.3
Q ss_pred ceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 24 RKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 24 R~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
|++.++.|++.......+.+.+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555555443322334556777999999999999999987
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.90 E-value=0.001 Score=73.10 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=74.3
Q ss_pred hhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
.|+.......+|-++.+..+...+... +..+.....++||.|+|||+||+.+++ ..-+.-...+-++.+...
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcc
Confidence 456666777889888888876643211 111122345999999999999999886 322221234444444322
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCe-EEEEecCccccCccchhhhccccCCC-----------CCC
Q 048774 86 DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKK-FLLVLDDVWNRNYDDWVDFSRPLGAS-----------AQG 153 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~ 153 (519)
+...+ ..+....+ .....++ ...+...++.++ .+++||+++..+...+..+...+... -.+
T Consensus 580 ~~~~~-----~~l~g~~~-gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 580 EKHTV-----SKLIGSPP-GYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred ccccH-----HHhcCCCC-cccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 21111 11111111 0000000 112334444445 48999999877665555554444321 135
Q ss_pred cEEEEEecc
Q 048774 154 SKIIVSTRN 162 (519)
Q Consensus 154 ~~ilvTsr~ 162 (519)
+-+|+||..
T Consensus 653 ~i~I~Tsn~ 661 (821)
T CHL00095 653 TLIIMTSNL 661 (821)
T ss_pred eEEEEeCCc
Confidence 556777764
No 229
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0056 Score=56.26 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=73.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC-----CCCHHHHHHHHHHHhhccCC------CCCCCHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD-----DFDVIRLTKTILTSIVTHQN------VDNLNLN 110 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~------~~~~~~~ 110 (519)
...+++|+|.+|+||||+++.+.. ...-. .+.++..... .....+...+++...+.... -+-...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 457888999999999999999997 33322 2333333211 22234455666666553331 1223333
Q ss_pred HHHHHHHHHhcCCeEEEEecCccccCc----cchhhhccccCCCCCCcEEEEEecchhHHHhcCC
Q 048774 111 KLQEELNKQLSGKKFLLVLDDVWNRNY----DDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMGT 171 (519)
Q Consensus 111 ~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~ 171 (519)
...-.+.+.+.-++-++|.|..-+.-. .+...+...+.. ..+...++.|-+-.+...+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcc
Confidence 444557788888999999999743211 111222222221 236678888888777766543
No 230
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00073 Score=71.38 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=72.2
Q ss_pred hhhhccccccccceeeeEeecCCCCC---CCCCCCC---eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEET---MPEWPEP---MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~---~~~~~~~---~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
.|+...+...+|-++.+..+.+.... +-.++++ .....||.|+|||-||++++. ..-+.=...+-+++++.-
T Consensus 484 ~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 484 NLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYM 561 (786)
T ss_pred HHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHH
Confidence 46666777777999888887764211 1112222 333899999999999998886 221111344444444321
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeE-EEEecCccccCccchhhhccccC
Q 048774 86 DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKF-LLVLDDVWNRNYDDWVDFSRPLG 148 (519)
Q Consensus 86 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l~ 148 (519)
-+--++.|.+..+....- ++ ...+-+..+.+|| ++.||++...++.....+...+.
T Consensus 562 -----EkHsVSrLIGaPPGYVGy-ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 -----EKHSVSRLIGAPPGYVGY-EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred -----HHHHHHHHhCCCCCCcee-cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 112234444443321111 11 2334455567777 88899998877655555555443
No 231
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.0036 Score=63.52 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=63.2
Q ss_pred cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HH-HhcCCCCeeecCCCChhhHHHHHHHhhhCCCC
Q 048774 121 SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VA-KIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRD 198 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 198 (519)
.++.=+.|||.|+-.+...+..+...+....+..+.|+.|++.. +. ........|.++.++.++-...+...+.....
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI 196 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC
Confidence 34555999999976666677777777766666777776666542 22 11223467899999999888888887654443
Q ss_pred CCCCchHHHHHHHHHHhhCCCc
Q 048774 199 FSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 199 ~~~~~~~~~~~~~i~~~~~g~P 220 (519)
... ++...-|++..+|-.
T Consensus 197 ~~e----~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 197 NIE----EDALSLIARAAEGSL 214 (515)
T ss_pred ccC----HHHHHHHHHHcCCCh
Confidence 322 455556666666643
No 232
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.87 E-value=0.0015 Score=58.79 Aligned_cols=110 Identities=11% Similarity=0.202 Sum_probs=56.2
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK 123 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (519)
.+++|+|+.|+||||++..+.. .+.......++. +..+.... .... ..+....+ ...+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t-~e~~~E~~--~~~~-~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILT-IEDPIEFV--HESK-RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEE-EcCCcccc--ccCc-cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 4678999999999999998876 333333333332 22221110 0000 00000101 1112234556677778777
Q ss_pred eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH
Q 048774 124 KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV 165 (519)
Q Consensus 124 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~ 165 (519)
+=++++|++.+. ......... ...|..++.|+-..+.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 889999999432 222222222 1235556666654433
No 233
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0096 Score=56.07 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=81.4
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-CceEEEEEcCCCCHHH-HHHHHHHHhhccCCC---CCCCHHHHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVSDDFDVIR-LTKTILTSIVTHQNV---DNLNLNKLQEE 115 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~---~~~~~~~~~~~ 115 (519)
+...-+.|.||.|+|||+|......+ .+.| +..+-|........++ .++.|.+++...... ...+..+....
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~ 123 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSK 123 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHH
Confidence 34566779999999999999888875 2223 2333344443333322 445565555433221 12222333344
Q ss_pred HHHHhc------CCeEEEEecCccccC----ccchhhhccccC-CCCCCcEEEEEecchh-------HHHhcCCCCeeec
Q 048774 116 LNKQLS------GKKFLLVLDDVWNRN----YDDWVDFSRPLG-ASAQGSKIIVSTRNHE-------VAKIMGTLPAYQL 177 (519)
Q Consensus 116 l~~~l~------~~~~LlvlDdv~~~~----~~~~~~l~~~l~-~~~~~~~ilvTsr~~~-------~~~~~~~~~~~~l 177 (519)
+...|+ +-++++|+|.++-.. +..+..+.+... ...|-|-|-+|||-.. |..+.....++-+
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~ 203 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFML 203 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeecc
Confidence 444443 236899999885322 222222222222 2345677779999642 2222333345556
Q ss_pred CCCChhhHHHHHHHhh
Q 048774 178 KKLSYNDCLAIFAQHS 193 (519)
Q Consensus 178 ~~L~~~ea~~L~~~~~ 193 (519)
+.+.-++-+++++...
T Consensus 204 ~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 204 PSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCCChHHHHHHHHHHh
Confidence 7777777777777654
No 234
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.86 E-value=0.00042 Score=70.18 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=73.7
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhc
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSK 473 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~ 473 (519)
+..++++..+...++. ...... +..+.+|++|++++|.|+.+. .+..++.|+.|++.+|.|..+.. +..
T Consensus 91 l~~~~~l~~l~l~~n~--------i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK--------IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LES 160 (414)
T ss_pred cccccceeeeeccccc--------hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Ccc
Confidence 4455555555554443 222333 557888888888888888773 36677778888888888876644 455
Q ss_pred CCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCC
Q 048774 474 LYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~l 515 (519)
+.+|+.+++++| .+..++.. ...+.+|+.+.+.+|. +..+
T Consensus 161 l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i 201 (414)
T KOG0531|consen 161 LKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNS-IREI 201 (414)
T ss_pred chhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCc-hhcc
Confidence 788888888887 55555442 4677888888888876 4433
No 235
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0039 Score=61.00 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=36.0
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhcC-CCCeeecCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIMG-TLPAYQLKK 179 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~-~~~~~~l~~ 179 (519)
+..-++|+|+++.........+...+......+.+|++|.+. .+...+. ....+++.+
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 456799999997766555555666666666788888888743 2322221 224555655
No 236
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.83 E-value=0.012 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456777999999999999999887
No 237
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.01 Score=53.50 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCcccc-C---ccchhhhccccCCCCCCcEEEEEecchhHHHhcC
Q 048774 109 LNKLQEELNKQLSGKKFLLVLDDVWNR-N---YDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG 170 (519)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~~-~---~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 170 (519)
.+..+-.+.+.|.-++-+||+|..-+. + +.+..++...+.. ..+-.+|+.|-+-.+...++
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHh
Confidence 344445577888889999999997321 1 1111122222221 23567889999887766554
No 238
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.012 Score=64.08 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=76.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
++-+.++|++|+|||++|+++++ .....| +.+... .++... .......+.......-..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~~--------~l~~~~------vGese~~i~~~f~~A~~~ 545 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRGP--------EILSKW------VGESEKAIREIFRKARQA 545 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEehH--------HHhhcc------cCcHHHHHHHHHHHHHhc
Confidence 44567999999999999999998 333222 222211 111111 111122223333333345
Q ss_pred CeEEEEecCccccC--------cc----chhhhccccCC--CCCCcEEEEEecchhHH-Hhc----CCCCeeecCCCChh
Q 048774 123 KKFLLVLDDVWNRN--------YD----DWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KIM----GTLPAYQLKKLSYN 183 (519)
Q Consensus 123 ~~~LlvlDdv~~~~--------~~----~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~~----~~~~~~~l~~L~~~ 183 (519)
.+.+|+||+++... .. ...++...+.. ...+.-||.||...+.. ... .....+.+...+.+
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~ 625 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEE 625 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHH
Confidence 78999999985321 00 11112222221 12234455555443321 111 12356778888888
Q ss_pred hHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 184 DCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 184 ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+-.++|..+...... ... .....+++.+.|+-
T Consensus 626 ~R~~i~~~~~~~~~~-~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 626 ARKEIFKIHTRSMPL-AED----VDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHhcCCCC-Ccc----CCHHHHHHHcCCCC
Confidence 888888765432211 111 12455667777654
No 239
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.0013 Score=64.74 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCceecccccccCCCCCCCchhhhhhccCCcccEEeecCc-cccccCccccCCCcCcEEeccCCC---CcccCcchhcC-
Q 048774 400 HLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGY-HISELPDSVGDLRYLRHLNLSRTE---IKTLPESVSKL- 474 (519)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~l~l~~~~---i~~lp~~~~~l- 474 (519)
+|+.|.+..+.+ ....|..+ ..+|+.|.+++| .+..+|++ |+.|++.++. +..+|+++..|
T Consensus 73 sLtsL~Lsnc~n------LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 73 ELTEITIENCNN------LTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred CCcEEEccCCCC------cccCCchh--hhhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhhee
Confidence 467776655542 12223222 247899999988 77777764 4555555443 45677665443
Q ss_pred -----------------CCCcEEeccCCCchhHhHHhhcccccCCEEEccCC
Q 048774 475 -----------------YNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNT 509 (519)
Q Consensus 475 -----------------~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 509 (519)
.+|++|++++|..+ .+|.. -..+|++|+++.|
T Consensus 139 I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 139 INSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK--LPESLQSITLHIE 187 (426)
T ss_pred ccccccccccccccccCCcccEEEecCCCcc-cCccc--ccccCcEEEeccc
Confidence 36788888887433 35532 2348888888765
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.81 E-value=0.0075 Score=65.74 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=85.7
Q ss_pred cccceeeeEeecCCCC----------CCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHH
Q 048774 21 FPCRKQAFIWAASPEE----------TMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRL 90 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~----------~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 90 (519)
+.|.+++++.+..... ...-..++.++|+|++|+|||+||+.+++ .....| +.++... +
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~---i~i~~~~------i 248 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF---ISINGPE------I 248 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE---EEEecHH------H
Confidence 5687777666644321 00112346678999999999999999987 332222 2222111 0
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCc------c-----chhhhccccCCC-CCCcEEEE
Q 048774 91 TKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY------D-----DWVDFSRPLGAS-AQGSKIIV 158 (519)
Q Consensus 91 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~-----~~~~l~~~l~~~-~~~~~ilv 158 (519)
.... .....+.+...+.......+.+|+||+++.... . ....+...+... ..+..+++
T Consensus 249 ----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 249 ----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred ----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 0000 011122233333344456678999999853210 0 111222222211 12333444
Q ss_pred -Eecchh-HHHhcC----CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 159 -STRNHE-VAKIMG----TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 159 -Tsr~~~-~~~~~~----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
||.... +..... ....+.+...+.++..+++..+...... .. ......+++.+.|+--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-cc----ccCHHHHHHhCCCCCH
Confidence 343322 211111 1245677777888888888755422111 11 1235567777877653
No 241
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.005 Score=57.70 Aligned_cols=88 Identities=22% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCeEE-EEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHH---HHHHHHH
Q 048774 43 EPMHV-FAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNK---LQEELNK 118 (519)
Q Consensus 43 ~~~~~-I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~---~~~~l~~ 118 (519)
...++ |+|+.|+||||+|.+++- ..+..-..++|++-....+...+.+-.-..+..-....+.+.++ .++.+.+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 34455 999999999999988876 34444457899998887776654333222122111113333333 3344444
Q ss_pred HhcCCeEEEEecCc
Q 048774 119 QLSGKKFLLVLDDV 132 (519)
Q Consensus 119 ~l~~~~~LlvlDdv 132 (519)
....+--|+|+|.+
T Consensus 137 ~~~~~i~LvVVDSv 150 (279)
T COG0468 137 SGAEKIDLLVVDSV 150 (279)
T ss_pred hccCCCCEEEEecC
Confidence 44443459999998
No 242
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.016 Score=58.75 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=81.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh-
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL- 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l- 120 (519)
.+.-+.++||+|+|||-||+++++ .-.-+| +++..+ +++...-. ..+..++.+.+..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG-------ESErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG-------ESERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh-------hHHHHHHHHHHHhh
Confidence 345677999999999999999999 444444 444432 12222111 1133344443333
Q ss_pred cCCeEEEEecCccccCc-----------cchhhhccccCCC--CCCcEEEEEe-cchhHHHhc---C-CCCeeecCCCCh
Q 048774 121 SGKKFLLVLDDVWNRNY-----------DDWVDFSRPLGAS--AQGSKIIVST-RNHEVAKIM---G-TLPAYQLKKLSY 182 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~~--~~~~~ilvTs-r~~~~~~~~---~-~~~~~~l~~L~~ 182 (519)
..-+++|.||.++..-+ ....++...+... ..|.-||-.| |..-+-..+ + -+....++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 45799999999953211 1112222222211 1344444333 333222221 1 235667777788
Q ss_pred hhHHHHHHHhhhCCCCC-CCCchHHHHHHHHHHhhCCCc
Q 048774 183 NDCLAIFAQHSLGTRDF-SSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 183 ~ea~~L~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 220 (519)
+|-.+++.........+ ..+-++++++.. .+|.|+-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 89999998876532222 222334454432 3455554
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.80 E-value=0.014 Score=53.48 Aligned_cols=139 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred EEEecCccccCccchhhhccccCCCCCCcEEEEEecc--hhHHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCc
Q 048774 126 LLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN--HEVAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHM 203 (519)
Q Consensus 126 LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~--~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 203 (519)
++|+-.++.........++.........+|+|+...+ +-+...-...-.+++...+++|....+.+.+...+...+
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--
Confidence 6677777554444455566655555668888876543 222222112346789999999999999887765443222
Q ss_pred hHHHHHHHHHHhhCCCchhHHHHhhhccC----------CCCHHHHHHHHhcccccCc--ccccchhhHHHHhhhcC
Q 048774 204 SLEEIGRKIVTKCDGLPLAAQTLGGLLRG----------EHDRREWERVLSSKIWELP--EERCRIIPALAVSYYYL 268 (519)
Q Consensus 204 ~~~~~~~~i~~~~~g~PLal~~~~~~l~~----------~~~~~~w~~~l~~~~~~~~--~~~~~~~~~l~~s~~~L 268 (519)
++.+.+|+++++|+-.---++...++- .-..-+|+-.+.+....+. ..+.++..+-..-|+-|
T Consensus 208 --~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 208 --KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 788999999999875322222222211 1134568776665433322 22233444444445544
No 244
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.00051 Score=69.60 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=29.9
Q ss_pred hccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCC
Q 048774 425 LFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDC 485 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~ 485 (519)
+..+..|+.|++++|.++.++. +..+..|+.+++.+|.+..+... ...+.+|+.+++.+|
T Consensus 136 l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hhhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 3344445555555555554422 33355555555555555544432 344455555555554
No 245
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.78 E-value=0.0064 Score=61.12 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=48.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCC--CCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNV--DNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~ 118 (519)
.+.++.++|++|+||||+|..++. .....-..+..++.... ....+.++.+..++..+... ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 456777999999999999999887 34333223444554432 22334445555555443321 12333333333333
Q ss_pred HhcCCeEEEEecCc
Q 048774 119 QLSGKKFLLVLDDV 132 (519)
Q Consensus 119 ~l~~~~~LlvlDdv 132 (519)
.+.+. -++|+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33443 46888887
No 246
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.77 E-value=0.0018 Score=67.38 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=32.7
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.+..++.+...+. ......++|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~---~~~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALC---GPNPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 36788888877765432 22345678999999999999999875
No 247
>PRK08233 hypothetical protein; Provisional
Probab=96.76 E-value=0.0037 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5777999999999999999986
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.75 E-value=0.0045 Score=54.65 Aligned_cols=120 Identities=15% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC-C------------C-CCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ-N------------V-DNL 107 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-~------------~-~~~ 107 (519)
+..+++|.|+.|+|||||++.+..- .. ...+.++++.. ........+-+.+..-. . . .-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~--~~-~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD--LK-PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc--CC-CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 4578889999999999999999873 11 12344443221 11111111111111000 0 0 011
Q ss_pred CHHHHHHHHHHHhcCCeEEEEecCcccc-CccchhhhccccCCCCCCcEEEEEecchhHHH
Q 048774 108 NLNKLQEELNKQLSGKKFLLVLDDVWNR-NYDDWVDFSRPLGASAQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 108 ~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 167 (519)
..+...-.+.+.+-.++-++++|+.... +......+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1122233355666677889999997421 22222222222222223567888888776654
No 249
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.003 Score=64.93 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC--CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF--DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
...-+.|.|+.|+|||+||+++++... +...-.+.+++++... ....+++. +.....++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHHH
Confidence 456677999999999999999998432 3333345566666542 11222111 12334455
Q ss_pred hcCCeEEEEecCcc
Q 048774 120 LSGKKFLLVLDDVW 133 (519)
Q Consensus 120 l~~~~~LlvlDdv~ 133 (519)
+...+-+|||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 67789999999995
No 250
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.73 E-value=0.0069 Score=56.14 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC-------------------
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ------------------- 102 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------- 102 (519)
...++.|+|++|+|||++|.++... ...+=..++|++.... ..++.+.+ .+++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 4567779999999999999998652 2223357888888754 34444433 1221100
Q ss_pred CCCCCCHHHHHHHHHHHhcC-CeEEEEecCcc
Q 048774 103 NVDNLNLNKLQEELNKQLSG-KKFLLVLDDVW 133 (519)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 133 (519)
.....+.+.....+...+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00123345566666666654 55689999984
No 251
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.01 Score=61.53 Aligned_cols=140 Identities=18% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..++++++||+|+|||.|++.+++ .....| +-++++.-.+..++ +....+. -..-+...+..+++ .+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI-----RGHRRTY--IGamPGrIiQ~mkk-a~ 415 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI-----RGHRRTY--IGAMPGKIIQGMKK-AG 415 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh-----ccccccc--cccCChHHHHHHHH-hC
Confidence 447888999999999999999987 555554 22344433332221 1111111 01111122222222 24
Q ss_pred CCeEEEEecCccccC----------------ccchhhhccccCCCC-CCcEEE-EEecc-hh-H-HHhcCCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRN----------------YDDWVDFSRPLGASA-QGSKII-VSTRN-HE-V-AKIMGTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~----------------~~~~~~l~~~l~~~~-~~~~il-vTsr~-~~-~-~~~~~~~~~~~l~~L 180 (519)
.++-+++||.++... +++-..|.+...... .=|+|+ |+|-+ -+ + .......+++++.+.
T Consensus 416 ~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgY 495 (782)
T COG0466 416 VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGY 495 (782)
T ss_pred CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCC
Confidence 567799999996421 111111222211111 123343 33333 11 1 233345678999999
Q ss_pred ChhhHHHHHHHhhh
Q 048774 181 SYNDCLAIFAQHSL 194 (519)
Q Consensus 181 ~~~ea~~L~~~~~~ 194 (519)
+++|-.++-.++..
T Consensus 496 t~~EKl~IAk~~Li 509 (782)
T COG0466 496 TEDEKLEIAKRHLI 509 (782)
T ss_pred ChHHHHHHHHHhcc
Confidence 99999988877753
No 252
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.72 E-value=0.0034 Score=56.28 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh-
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL- 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l- 120 (519)
..++.+|.|++|+|||+++..+.. .+...-..++++ ........ .+........ .............-
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~-apT~~Aa~----~L~~~~~~~a----~Ti~~~l~~~~~~~~ 85 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGL-APTNKAAK----ELREKTGIEA----QTIHSFLYRIPNGDD 85 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEE-ESSHHHHH----HHHHHHTS-E----EEHHHHTTEECCEEC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEE-CCcHHHHH----HHHHhhCcch----hhHHHHHhcCCcccc
Confidence 457888999999999999998876 333331223333 22221222 2222221110 01100000000000
Q ss_pred -----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 121 -----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 121 -----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
..+.-++|+|++.-.+...+..+...... .++|+|+.--..
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12334999999965554555555555544 377888766543
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.71 E-value=0.001 Score=71.47 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=65.2
Q ss_pred hhhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 11 DALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 11 ~~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
..|+.......+|-++.+..+...+... +..+...+.++|++|+|||.+|+.++. ... ...+.++++..
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~---~~~i~id~se~ 524 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEY 524 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhC---CCcEEeechhh
Confidence 3466666777789888877776654321 111223566999999999999999987 332 23344454433
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-eEEEEecCccccCccchhhhcc
Q 048774 85 FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGK-KFLLVLDDVWNRNYDDWVDFSR 145 (519)
Q Consensus 85 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~ 145 (519)
..... ...+....+.... . .....+...++.+ ..+++||+++..+...+..+..
T Consensus 525 ~~~~~-----~~~LiG~~~gyvg-~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq 579 (758)
T PRK11034 525 MERHT-----VSRLIGAPPGYVG-F-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQ 579 (758)
T ss_pred ccccc-----HHHHcCCCCCccc-c-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHH
Confidence 21111 1222222111100 0 0011222333333 4599999998766544444443
No 254
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.69 E-value=0.0051 Score=52.16 Aligned_cols=106 Identities=19% Similarity=0.136 Sum_probs=57.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
...+++|.|+.|+|||||++.+.... ....+.++++... .+..-. +-...+...-.+.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~ 86 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLL 86 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHh
Confidence 45788899999999999999998732 1223444443210 000000 01112223333456666
Q ss_pred CCeEEEEecCccc-cCccchhhhccccCCCCCCcEEEEEecchhHHH
Q 048774 122 GKKFLLVLDDVWN-RNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 122 ~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 167 (519)
.++-++++|+... .+......+...+... +..||++|.+.+...
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 6778999999742 2222233333333322 246788887765543
No 255
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0065 Score=59.58 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=49.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 118 (519)
...+++++|+.|+||||++..+.. .....+ ..+..++.... ....+.++...+.++.+.. ...+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-
Confidence 456888999999999999999887 332222 34556664443 2333444444455544332 2222223333333
Q ss_pred HhcCCeEEEEecCcc
Q 048774 119 QLSGKKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~ 133 (519)
.+.++ -++++|...
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 33444 466699984
No 256
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0015 Score=69.06 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=80.6
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc-CCC------ceEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN-HFD------LKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~-~f~------~~~wv~~~~~~~~~~~~ 91 (519)
|-.+||++|+.++...|.- ....--+++|.+|+|||++|.-++. ++.. .-+ .++=++++
T Consensus 170 DPvIGRd~EI~r~iqIL~R---R~KNNPvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~g--------- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSR---RTKNNPVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDLG--------- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhc---cCCCCCeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecHH---------
Confidence 4456999999998776552 2233345799999999999977766 3322 111 11111111
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCcccc----C----ccchhhhccccCCCCCCcEEE-EEecc
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNR----N----YDDWVDFSRPLGASAQGSKII-VSTRN 162 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----~----~~~~~~l~~~l~~~~~~~~il-vTsr~ 162 (519)
.+........+-.+.+...+.+.-+..+++|++|.++.. . ..+...+..+-...+ .-+.| .||-+
T Consensus 236 -----~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~ 309 (786)
T COG0542 236 -----SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLD 309 (786)
T ss_pred -----HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHH
Confidence 111111112222333334444444455899999998531 1 112222222222222 23444 44444
Q ss_pred hhHHHhcC-------CCCeeecCCCChhhHHHHHHH
Q 048774 163 HEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQ 191 (519)
Q Consensus 163 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~ 191 (519)
+.-+.+. .++.+.+..-+.+++..++.-
T Consensus 310 -EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 -EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred -HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 3322221 346788999999999999864
No 257
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.003 Score=56.39 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=41.4
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHH-HHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTIL-TSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il-~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.+++|.|.+|+||||+|+.++. .+..+. +.-++......-. -..... +....-..+..-+.+.+.+.+...+.+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~-~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQ-SHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccch-hhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 4666999999999999999987 554432 1112211111100 000111 111111123456677777888888777
Q ss_pred Ce
Q 048774 123 KK 124 (519)
Q Consensus 123 ~~ 124 (519)
++
T Consensus 84 ~~ 85 (218)
T COG0572 84 KP 85 (218)
T ss_pred Cc
Confidence 76
No 258
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.67 E-value=0.00017 Score=73.93 Aligned_cols=81 Identities=25% Similarity=0.274 Sum_probs=64.7
Q ss_pred cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEc
Q 048774 427 KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNN 506 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l 506 (519)
-++.|+.|+|++|++++.- .+..+++|+.||+++|.+..+|.--..--+|+.|++++| .+..+- ++.+|.+|+.||+
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhh-hHHhhhhhhccch
Confidence 5677899999999998774 688899999999999998888763222234899999987 677773 5889999999999
Q ss_pred cCCC
Q 048774 507 SNTD 510 (519)
Q Consensus 507 ~~~~ 510 (519)
+.|-
T Consensus 262 syNl 265 (1096)
T KOG1859|consen 262 SYNL 265 (1096)
T ss_pred hHhh
Confidence 9885
No 259
>PTZ00301 uridine kinase; Provisional
Probab=96.66 E-value=0.0026 Score=57.45 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+|+|.|++|+||||||+.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5677999999999999998876
No 260
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.01 Score=56.57 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=46.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
..++++|+|++|+||||++..++.....+..-..+..++..... .....+......+..+.. ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc-
Confidence 35678899999999999999887632222111345666655432 122222223333332222 233444554444433
Q ss_pred cCCeEEEEecCc
Q 048774 121 SGKKFLLVLDDV 132 (519)
Q Consensus 121 ~~~~~LlvlDdv 132 (519)
.+ .=++++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777754
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.63 E-value=0.0012 Score=55.66 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=50.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhh-hcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRV-QNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
....|+|+|..|+||+++|+.++..... ...|.. +++.... .+.+..
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~---------------------------~~~l~~-- 67 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP---------------------------AELLEQ-- 67 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC---------------------------HHHHHH--
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc---------------------------HHHHHH--
Confidence 3466789999999999999988863211 111211 1111110 111111
Q ss_pred cCCeEEEEecCccccCccchhhhccccCCC-CCCcEEEEEecch
Q 048774 121 SGKKFLLVLDDVWNRNYDDWVDFSRPLGAS-AQGSKIIVSTRNH 163 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~ 163 (519)
.+.--++|+|++..+......+...+... ..+.|+|+||+..
T Consensus 68 -a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 -AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 14456889999776655555555555422 4678999998753
No 262
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.61 E-value=0.0037 Score=60.69 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhh----cCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC--------CCCCCHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQ----NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN--------VDNLNLN 110 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~ 110 (519)
..+.-|+|++|+|||+|+..++-..... +.-..++|++-...+....+.+ +++.++.... ....+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 3444499999999999998775321211 1124789999988877766554 4444433211 1223444
Q ss_pred HHHHHHH---HHhcC-CeEEEEecCc
Q 048774 111 KLQEELN---KQLSG-KKFLLVLDDV 132 (519)
Q Consensus 111 ~~~~~l~---~~l~~-~~~LlvlDdv 132 (519)
.....+. ..+.. +--|||+|.+
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3332222 23322 3448888887
No 263
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.61 E-value=0.0078 Score=53.94 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=43.5
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcC-CC---ceEEEEEcCCCCHHHHHHHHHHHh---hccCCCCCCCHHHHHHHHH
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNH-FD---LKAWTCVSDDFDVIRLTKTILTSI---VTHQNVDNLNLNKLQEELN 117 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~---~~~wv~~~~~~~~~~~~~~il~~l---~~~~~~~~~~~~~~~~~l~ 117 (519)
+|+|.|++|+||||+|+.+.. .+... .. ....+.............. -... ..-..+...+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 577999999999999999987 44422 22 1333333332222222111 1111 1111234567777777777
Q ss_pred HHhcCCeEEE
Q 048774 118 KQLSGKKFLL 127 (519)
Q Consensus 118 ~~l~~~~~Ll 127 (519)
....++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665544
No 264
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.61 E-value=0.015 Score=51.49 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=63.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC--CCCHHHHH------HHHHHHhhccCC-----CCCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD--DFDVIRLT------KTILTSIVTHQN-----VDNLN 108 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~------~~il~~l~~~~~-----~~~~~ 108 (519)
+..+++|.|+.|+|||||++.+... . ....+.++++... ..+..... .+++..+..... ..-..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4578889999999999999999872 2 2233444432111 11111111 113333332211 01122
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccc-cCccchhhhccccCCCC-C-CcEEEEEecchhHH
Q 048774 109 LNKLQEELNKQLSGKKFLLVLDDVWN-RNYDDWVDFSRPLGASA-Q-GSKIIVSTRNHEVA 166 (519)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~-~-~~~ilvTsr~~~~~ 166 (519)
.+...-.+.+.+-..+-++++|+... .+......+...+.... . +..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22333445566777888999999742 22222333333332221 2 56788888876554
No 265
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.59 E-value=0.00058 Score=68.45 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=42.5
Q ss_pred hhhhhhccccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 10 SDALEAAAHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 10 ~~~l~~~~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+.......|+||++.++.+...+. ....++|.|++|+|||++|+.+..
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal-----ag~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL-----SGESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc-----cCCCEEEECCCChhHHHHHHHHHH
Confidence 345667777899999999998876655 456778999999999999999986
No 266
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.59 E-value=0.0096 Score=52.27 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=44.4
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC--CCCCCCHHHHH-HHHHHHh
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ--NVDNLNLNKLQ-EELNKQL 120 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~--~~~~~~~~~~~-~~l~~~l 120 (519)
+++++|++|+||||++..++. .....-..++.++..... ...+.+.........+. .....+..... +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998886 443332234445544321 22233333333332211 11223444433 3333334
Q ss_pred cCCeEEEEecCcc
Q 048774 121 SGKKFLLVLDDVW 133 (519)
Q Consensus 121 ~~~~~LlvlDdv~ 133 (519)
....-++|+|...
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4444466688763
No 267
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.57 E-value=0.0083 Score=55.68 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKT 93 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 93 (519)
...++.|.|++|+|||++|.++.. .....-..++|++.... ..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeCC--HHHHHHH
Confidence 456777999999999999988765 22233457888887764 4444443
No 268
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.57 E-value=0.016 Score=50.18 Aligned_cols=119 Identities=16% Similarity=0.074 Sum_probs=62.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC---CCCHHHHHHHHHHH---hhccCCCCCCC-------H
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD---DFDVIRLTKTILTS---IVTHQNVDNLN-------L 109 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~---l~~~~~~~~~~-------~ 109 (519)
..++.|++..|.||||.|..++- +...+=..++.+-.-+ .......+..+.-. ..........+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 45777888899999999976655 3333322333332222 22333333332000 00100000011 1
Q ss_pred HHHHHHHHHHhcCCeE-EEEecCcc---ccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 110 NKLQEELNKQLSGKKF-LLVLDDVW---NRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 110 ~~~~~~l~~~l~~~~~-LlvlDdv~---~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
.......++.+...+| |+|||.+- +......+++...+....++..+|+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223344455555555 99999983 122344455666666666688999999975
No 269
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.021 Score=62.52 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=33.7
Q ss_pred hhhccccccccceeeeEeecCCCC---CCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 13 LEAAAHDVFPCRKQAFIWAASPEE---TMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 13 l~~~~~~~f~gR~~~~~~l~~~~~---~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++...++..+|-++..+.+...+. .......+++.++|++|+|||++|+.+++
T Consensus 314 ~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 314 AKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344444556676666555543211 11122345677999999999999999987
No 270
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.013 Score=56.94 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=46.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCC--CCCCHHHHH-HHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNV--DNLNLNKLQ-EELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~--~~~~~~~~~-~~l~ 117 (519)
.+.+++++|++|+||||++..++. ....+=..++.++.... ......++.....++.+... ...+..... +.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 456777999999999998888776 33332113334443321 12233344455555443221 122333322 3222
Q ss_pred HHhcCCeEEEEecCccc
Q 048774 118 KQLSGKKFLLVLDDVWN 134 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~~ 134 (519)
.......-++++|....
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222223899999844
No 271
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.55 E-value=0.0048 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..|+|+|..|+||+.+|+.+++
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHH
Confidence 46677999999999999999997
No 272
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.55 E-value=0.011 Score=55.68 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
...++.|.|++|+|||++|.+++.. ....=..+++++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCCc
Confidence 4567779999999999999987652 22223467888887543
No 273
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.54 E-value=0.0014 Score=63.94 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=40.6
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
.+.++|+...+..+.+....... ....|.|+|..|+||+++|+.++.. -...-...+.+++...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~-~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAP-LDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCC
Confidence 34577888776666554443332 4567789999999999999999852 1111123445566553
No 274
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.54 E-value=0.0024 Score=54.27 Aligned_cols=36 Identities=28% Similarity=0.103 Sum_probs=27.4
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
.++.|+|.+|+||||||+++.+ +....-..+++++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecC
Confidence 4566999999999999999998 65555556666653
No 275
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0033 Score=55.15 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999987
No 276
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.011 Score=51.81 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC--CCHHHHHHHHHHHhhc--cCC-CCCCC--------
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD--FDVIRLTKTILTSIVT--HQN-VDNLN-------- 108 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~--~~~-~~~~~-------- 108 (519)
+..+++|.|+.|+|||||.+.++.- .. ...+.+++..... ...... -+.+.. +.. .....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 4578889999999999999999873 21 2234444322110 011111 111110 000 00001
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccc-cCccchhhhccccCCCCCCcEEEEEecchhHHHh
Q 048774 109 LNKLQEELNKQLSGKKFLLVLDDVWN-RNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKI 168 (519)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~ 168 (519)
.+...-.+.+.+..++-++++|+-.. .+......+...+.....+..||++|.+......
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11122334556667788999999742 1222223333333222224668888887766543
No 277
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.50 E-value=0.023 Score=49.51 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=59.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE-------EcCCCCH--HHHHHHHHHHhhccCCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC-------VSDDFDV--IRLTKTILTSIVTHQNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~-------~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~ 112 (519)
+..+++|.|+.|+|||||++.+.... . ...+.+++. +.+.... ..+...+. ......-...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~--~-~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~----~~~~~~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW--P-WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLI----YPWDDVLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC--C-CCCceEEECCCceEEEECCCCccccccHHHHhh----ccCCCCCCHHHHH
Confidence 45788899999999999999998732 1 112222211 1111111 12222221 1011122223333
Q ss_pred HHHHHHHhcCCeEEEEecCccc-cCccchhhhccccCCCCCCcEEEEEecchhHHH
Q 048774 113 QEELNKQLSGKKFLLVLDDVWN-RNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 113 ~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 167 (519)
.-.+.+.+-.++-++++|+-.. .+......+...+... +..+|++|.+.....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 4445666677888999999732 1222222232333222 356788887765543
No 278
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.49 E-value=0.0027 Score=64.69 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=79.2
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHH-HHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
.+|-.|++++..+. .+++|+|+|..|+||||-. +.+|.+.. .-++.+-++-.+......+.+.+..+
T Consensus 356 Pvf~~R~~ll~~ir---------~n~vvvivgETGSGKTTQl~QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIR---------ENQVVVIVGETGSGKTTQLAQYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred chHHHHHHHHHHHh---------hCcEEEEEecCCCCchhhhHHHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHH
Confidence 67888999888774 3689999999999999655 55554311 11344444444445556677777777
Q ss_pred hhccCCC-----------CCC--------CHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhcccc---CCCCCCcE
Q 048774 98 IVTHQNV-----------DNL--------NLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPL---GASAQGSK 155 (519)
Q Consensus 98 l~~~~~~-----------~~~--------~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l---~~~~~~~~ 155 (519)
++..... ... +.-.+.+.+.+..-++--.||+|.++..+. ..+.+...+ ......-|
T Consensus 424 M~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERsl-NtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSL-NTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred hCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhccc-chHHHHHHHHHHHHhhccce
Confidence 7543210 001 111233444444445666999999965442 222222221 22235789
Q ss_pred EEEEecchhHH
Q 048774 156 IIVSTRNHEVA 166 (519)
Q Consensus 156 ilvTsr~~~~~ 166 (519)
+||||---+..
T Consensus 503 liVtSATm~a~ 513 (1042)
T KOG0924|consen 503 LIVTSATMDAQ 513 (1042)
T ss_pred EEEeeccccHH
Confidence 99998765443
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.49 E-value=0.0075 Score=52.36 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=61.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC--CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF--DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
+..+++|.|+.|+|||||.+.++.. . ....+.++++..... +..... -+.+..-. +-...+...-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~--qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY--QLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE--ecCHHHHHHHHHHHH
Confidence 4578889999999999999999873 2 223445554322111 111111 01111110 122223333445566
Q ss_pred hcCCeEEEEecCccc-cCccchhhhccccCCC-CCCcEEEEEecchhHH
Q 048774 120 LSGKKFLLVLDDVWN-RNYDDWVDFSRPLGAS-AQGSKIIVSTRNHEVA 166 (519)
Q Consensus 120 l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~ 166 (519)
+-.++-++++|+... .+......+...+... ..+..||++|.+....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 677788999999742 2222223333333221 2356688888886543
No 280
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.011 Score=61.01 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC-CCCCHHHHHHHHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV-DNLNLNKLQEELNKQ 119 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~ 119 (519)
.+.++++++||+|+|||.+|+.+++ .....|. -++++.-.+..++ ..+-.. -..-+...+..++..
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI--------kGHRRTYVGAMPGkiIq~LK~v 502 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI--------KGHRRTYVGAMPGKIIQCLKKV 502 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh--------cccceeeeccCChHHHHHHHhh
Confidence 3567888999999999999999987 4444442 2444443333322 111110 011112223333222
Q ss_pred hcCCeEEEEecCcccc----------------CccchhhhccccCC-CCCCcEEEEEecchhHH----HhcCCCCeeecC
Q 048774 120 LSGKKFLLVLDDVWNR----------------NYDDWVDFSRPLGA-SAQGSKIIVSTRNHEVA----KIMGTLPAYQLK 178 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~----------------~~~~~~~l~~~l~~-~~~~~~ilvTsr~~~~~----~~~~~~~~~~l~ 178 (519)
+..+-|+.||.++.. ++++-..|.+.... .-.=|+|++.+.-..+. ......+.+++.
T Consensus 503 -~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIels 581 (906)
T KOG2004|consen 503 -KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELS 581 (906)
T ss_pred -CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeecc
Confidence 345678899998531 11111222222211 11246677655432221 112234788999
Q ss_pred CCChhhHHHHHHHhhh
Q 048774 179 KLSYNDCLAIFAQHSL 194 (519)
Q Consensus 179 ~L~~~ea~~L~~~~~~ 194 (519)
++..+|-+.+-.++..
T Consensus 582 GYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 582 GYVAEEKVKIAERYLI 597 (906)
T ss_pred CccHHHHHHHHHHhhh
Confidence 9999998887776654
No 281
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.47 E-value=0.0083 Score=52.16 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=43.0
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH--HhhccCCCCCCCHHHHHHHHHHHhcCC
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT--SIVTHQNVDNLNLNKLQEELNKQLSGK 123 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (519)
+.|.|.+|+|||++|.++... ....++++.-....+.+ +.+.+.+ +.........+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 569999999999999998752 22355666555554432 3333322 22222222223333334433222 2 2
Q ss_pred eEEEEecCc
Q 048774 124 KFLLVLDDV 132 (519)
Q Consensus 124 ~~LlvlDdv 132 (519)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 282
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.47 E-value=0.0052 Score=59.18 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=50.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhh----cCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC--------CCCCCHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQ----NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN--------VDNLNLN 110 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~~ 110 (519)
..+.-|+|++|+|||+|+..++-..... ..=..++|++....++...+.+ +++.+..... ....+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHH
Confidence 3455599999999999998765321211 1124788999888777766544 4444433211 0122333
Q ss_pred HHHHHH---HHHhc-CCeEEEEecCc
Q 048774 111 KLQEEL---NKQLS-GKKFLLVLDDV 132 (519)
Q Consensus 111 ~~~~~l---~~~l~-~~~~LlvlDdv 132 (519)
.....+ ...+. .+.-|+|+|.+
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 333222 22333 34448888887
No 283
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.0086 Score=55.93 Aligned_cols=75 Identities=25% Similarity=0.224 Sum_probs=43.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
+..-++++|++|+|||.||.++.++ ....--.+.++++ .+++..+....... . ....+.+.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~~------~---~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDEG------R---LEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcC------c---hHHHHHHHhh
Confidence 4556789999999999999999984 3332223445443 34444444443321 1 1112222111
Q ss_pred CCeEEEEecCccc
Q 048774 122 GKKFLLVLDDVWN 134 (519)
Q Consensus 122 ~~~~LlvlDdv~~ 134 (519)
+-=||||||+..
T Consensus 167 -~~dlLIiDDlG~ 178 (254)
T COG1484 167 -KVDLLIIDDIGY 178 (254)
T ss_pred -cCCEEEEecccC
Confidence 123899999954
No 284
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.47 E-value=0.028 Score=53.35 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=36.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
...+++|.|++|+|||+++..++.... ..+-..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 456888999999999999998876321 221246888887764 44555555444
No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.46 E-value=0.00042 Score=66.87 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=34.9
Q ss_pred ccccceeeeEeecCCCCCCC---CCCCCeEEEEecCCchHHHHHHHHhCC
Q 048774 20 VFPCRKQAFIWAASPEETMP---EWPEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~---~~~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.|+|-++.+..+++.+.... +...++++|+|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46688777777766443322 335677789999999999999999873
No 286
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.46 E-value=0.016 Score=50.82 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC---hhhhcC---C--CceEEEEEcCCCCHHHHHHHHHHHhhccCC---CCCCC--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND---DRVQNH---F--DLKAWTCVSDDFDVIRLTKTILTSIVTHQN---VDNLN-- 108 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~---~~~~~~---f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~~~~~-- 108 (519)
+..+++|.|+.|+|||||.+.+..+ ..+... | ..+.|+. + .+.+..+..... .....
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 4578889999999999999988632 111111 1 0122221 1 344555543221 11111
Q ss_pred -HHHHHHHHHHHhcCC--eEEEEecCccc-cCccchhhhccccCCC-CCCcEEEEEecchhHHH
Q 048774 109 -LNKLQEELNKQLSGK--KFLLVLDDVWN-RNYDDWVDFSRPLGAS-AQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 109 -~~~~~~~l~~~l~~~--~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 167 (519)
-+...-.+.+.+..+ +-++++|+... .+......+...+... ..+..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122233345555566 77889999732 2222222233322211 13666888888876553
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.011 Score=59.31 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=46.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCC-CHHHHHHHHHHHhhccCCC--CCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNV--DNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~ 117 (519)
.+.++.++|++|+||||.|..++. ..... -..+..++..... ...+.++......+.+... ...+.........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 356777999999999998888776 33333 2334555554332 2222333344444332111 2234444444333
Q ss_pred HHhcCCeE-EEEecCc
Q 048774 118 KQLSGKKF-LLVLDDV 132 (519)
Q Consensus 118 ~~l~~~~~-LlvlDdv 132 (519)
+..+.+.+ ++|+|-.
T Consensus 177 ~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 EEAKENGYDVVIVDTA 192 (433)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 33333334 6777766
No 288
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.43 E-value=0.0031 Score=59.24 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.6
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|+|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4678999999999999999887
No 289
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.0066 Score=58.63 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=32.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh---c-CCCceEEEEEcCCCCHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ---N-HFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~ 89 (519)
...++.|+|++|+|||+|+..++...... + .-..++|++....+....
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R 146 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER 146 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH
Confidence 35566799999999999998876421111 1 113578998887666554
No 290
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.42 E-value=0.087 Score=47.94 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 40 EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 40 ~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
+..++-|..+|++|.|||.+|+++++.. +--| +.+... +++... ..+....+..+.+.
T Consensus 148 ~WAPknVLFyGppGTGKTm~Akalane~--kvp~-----l~vkat--------~liGeh-------VGdgar~Ihely~r 205 (368)
T COG1223 148 DWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL-----LLVKAT--------ELIGEH-------VGDGARRIHELYER 205 (368)
T ss_pred ccCcceeEEECCCCccHHHHHHHHhccc--CCce-----EEechH--------HHHHHH-------hhhHHHHHHHHHHH
Confidence 4567888899999999999999999842 2222 222211 111111 01111222222222
Q ss_pred -hcCCeEEEEecCccccC----c----cchhh----hccccC--CCCCCcEEEEEecchhHH-HhcC--CCCeeecCCCC
Q 048774 120 -LSGKKFLLVLDDVWNRN----Y----DDWVD----FSRPLG--ASAQGSKIIVSTRNHEVA-KIMG--TLPAYQLKKLS 181 (519)
Q Consensus 120 -l~~~~~LlvlDdv~~~~----~----~~~~~----l~~~l~--~~~~~~~ilvTsr~~~~~-~~~~--~~~~~~l~~L~ 181 (519)
-+.-++++.+|.++-.. + .+..+ +...+. ..+.|...|-.|.+.++. ..+. ....++..--+
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~ 285 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPN 285 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCC
Confidence 24468999999985211 1 11111 111221 123455555445444432 2222 12445666667
Q ss_pred hhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 182 YNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 182 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
++|-.+++..++..-.-+. +...+.++++.+|+.
T Consensus 286 ~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~S 319 (368)
T COG1223 286 DEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGMS 319 (368)
T ss_pred hHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCCC
Confidence 8888889988875433221 122455666666654
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.41 E-value=0.0095 Score=57.79 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc----CCCceEEEEEcCCCCHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN----HFDLKAWTCVSDDFDVIRLTK 92 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~ 92 (519)
...++.|+|++|+|||+++..++....... .-..++|++....++...+.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 345666999999999999988875322111 113789999988776665443
No 292
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0061 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++++|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4677999999999999999987
No 293
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.044 Score=50.80 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=42.1
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh-cC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL-SG 122 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~ 122 (519)
+-+.++||+|.|||.||++++.+. ...| .+++.. ++.+.+.... +.+++.+.+.. .+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSS--------DLvSKWmGES-------EkLVknLFemARe~ 224 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSS--------DLVSKWMGES-------EKLVKNLFEMAREN 224 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehH--------HHHHHHhccH-------HHHHHHHHHHHHhc
Confidence 445599999999999999999733 2222 334332 2333333322 33444444443 35
Q ss_pred CeEEEEecCcc
Q 048774 123 KKFLLVLDDVW 133 (519)
Q Consensus 123 ~~~LlvlDdv~ 133 (519)
++-+|.+|.++
T Consensus 225 kPSIIFiDEiD 235 (439)
T KOG0739|consen 225 KPSIIFIDEID 235 (439)
T ss_pred CCcEEEeehhh
Confidence 88999999995
No 294
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0044 Score=60.16 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=80.8
Q ss_pred cCCCCceecccccccCCCCCCCch-hhhhhccCCcccEEeecCcc-ccccCccccCCCcCcEEeccCCCCcccC--cchh
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPS-ILTELFKLQRLRIFSLRGYH-ISELPDSVGDLRYLRHLNLSRTEIKTLP--ESVS 472 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~l~l~~~~i~~lp--~~~~ 472 (519)
.+++++.|.+.+|. ++-. +......+++|.+|++++|. +..--.+..-+..|+.|+|++|.+-..+ ...+
T Consensus 195 ~l~~lK~L~l~~CG------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG------LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhhheEEeccCC------CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 56778888887776 3333 33334489999999999994 3222233445778999999999877665 6678
Q ss_pred cCCCCcEEeccCCCchhH--hHHh-----hcccccCCEEEccCCCCCCCCCC
Q 048774 473 KLYNLHTLLLEDCRRLKK--LCAA-----MGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~--lp~~-----~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
.++.|..|+++.| .+.+ +|+. ...+++|++|+++.|+ +..+|.
T Consensus 269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~s 318 (505)
T KOG3207|consen 269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRS 318 (505)
T ss_pred cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccc
Confidence 8999999999987 4544 3432 4577899999999998 766553
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.40 E-value=0.017 Score=54.48 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=49.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCC--CCCCCHHHH-HHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQN--VDNLNLNKL-QEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~--~~~~~~~~~-~~~l~ 117 (519)
..++++++|++|+||||++..++. .....-..+.+++..... ...+-+.........+.. ....+.... .+.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 456777899999999999988876 344333356666655422 122333334444442211 112233332 23343
Q ss_pred HHhcCCeEEEEecCcc
Q 048774 118 KQLSGKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~ 133 (519)
.......-++++|-.-
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 3333444588899873
No 296
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.40 E-value=0.01 Score=59.46 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCCC--CCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNV--DNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~ 117 (519)
.+.+++++|++|+||||+|..++. ... ..-..+..+++.... ...+.+.........+... ...++........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 345777999999999999988876 332 121234455554332 2233333344444333211 2234444444333
Q ss_pred HHhcCCeE-EEEecCcc
Q 048774 118 KQLSGKKF-LLVLDDVW 133 (519)
Q Consensus 118 ~~l~~~~~-LlvlDdv~ 133 (519)
+.+..+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 34434444 78888773
No 297
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.011 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++++|++|+||||++..++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45677999999999999999886
No 298
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.38 E-value=0.014 Score=51.26 Aligned_cols=119 Identities=22% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC--CCHHHHHHHHHHHhhccC-CC--C--------CCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD--FDVIRLTKTILTSIVTHQ-NV--D--------NLN 108 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~-~~--~--------~~~ 108 (519)
+..+++|.|+.|+|||||++.+... . ....+.++++.... ...... ...+..-. .. . -..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 4578889999999999999999862 1 12234443321111 111111 11111110 00 0 011
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccc-cCccchhhhccccCCC-CCCcEEEEEecchhHHH
Q 048774 109 LNKLQEELNKQLSGKKFLLVLDDVWN-RNYDDWVDFSRPLGAS-AQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 167 (519)
.+...-.+.+.+..++-++++|+... .+......+...+... ..+..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12223335566667788999999742 1222222222222211 23567888888776554
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.38 E-value=0.0054 Score=60.21 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.|+|..|.|||.|+..+|+...+... ......+.+..+.+.+..... .... ...+.+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~-~~~~----l~~va~~l~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRG-QDDP----LPQVADELA 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhC-CCcc----HHHHHHHHH
Confidence 4567779999999999999999984322111 111223334444443333221 2222 334444555
Q ss_pred CCeEEEEecCccccCccchhhhccccCC-CCCCcEEEEEec
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGA-SAQGSKIIVSTR 161 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~~~~ilvTsr 161 (519)
++..||+||.+.-.+..+-..+...+.. ...|..++.||.
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 6677999999865444333333322221 224664444443
No 300
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.37 E-value=0.011 Score=57.55 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcC----CCceEEEEEcCCCCHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNH----FDLKAWTCVSDDFDVIRLTK 92 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~ 92 (519)
..++.|+|++|+|||+++..++........ =..++|++....++...+.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 456669999999999999888753211111 14789999988776665543
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.37 E-value=0.0027 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999885
No 302
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.37 E-value=0.07 Score=50.99 Aligned_cols=155 Identities=8% Similarity=0.081 Sum_probs=87.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhh--------h--cCCCceEEEEE-cCCCCHHHHHHHHHHHhhccCCCCCCCHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRV--------Q--NHFDLKAWTCV-SDDFDVIRLTKTILTSIVTHQNVDNLNLNK 111 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~--------~--~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 111 (519)
.+...++|+.|.||+++|..+.+ .+ . .+-+.+.+++. +.....+++. .+...+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~--------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS--------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC---------
Confidence 45666999999999999988876 32 1 11112222221 1111222111 2222221111
Q ss_pred HHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc-hhHHHhc-CCCCeeecCCCChhhHHHHH
Q 048774 112 LQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN-HEVAKIM-GTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 112 ~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~ 189 (519)
.-.+++-++|+|+++.........+...+....+.+.+|++|.+ ..+.+.+ .....+++.+++.++....+
T Consensus 86 -------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 86 -------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158 (299)
T ss_pred -------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence 00146778999999766655555677777666667777766644 3344332 23467899999999988877
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 190 AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
.... .+ ++.+..++...+|.=.|+..+
T Consensus 159 ~~~~------~~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 159 LSKN------KE----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHcC------CC----hhHHHHHHHHcCCHHHHHHHH
Confidence 6531 11 344666666666633455543
No 303
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.34 E-value=0.039 Score=49.93 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEecCcc-ccCccchhhhccccCCC--CCCcEEEEEecchhHHHhc
Q 048774 107 LNLNKLQEELNKQLSGKKFLLVLDDVW-NRNYDDWVDFSRPLGAS--AQGSKIIVSTRNHEVAKIM 169 (519)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~-~~~~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~~~ 169 (519)
...+..+-.+.+.+-.++-+|+.|+-- +.+...-..+...+... ..|..||+.|-+..++..+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC
Confidence 344555666778888889999999852 11111122222222211 2367799999999888764
No 304
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0024 Score=68.51 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred ehhhhhhccccccccceeeeEeecCCCCCCCCC-----CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC
Q 048774 9 RSDALEAAAHDVFPCRKQAFIWAASPEETMPEW-----PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD 83 (519)
Q Consensus 9 ~~~~l~~~~~~~f~gR~~~~~~l~~~~~~~~~~-----~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 83 (519)
++-.|+.+.+...+|-++.+..+..+......+ +.-+..+.|+.|+|||-||++++. .+-+..+..+-+++++
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE 629 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh
Confidence 556677788888889999888887754332211 222444999999999999999987 4444445566666554
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeE-EEEecCccccCccchh
Q 048774 84 DFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKF-LLVLDDVWNRNYDDWV 141 (519)
Q Consensus 84 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~ 141 (519)
.-. ..++....+ .--..+....+.+.++.++| +|.|||++..++....
T Consensus 630 ~~e--------vskligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n 678 (898)
T KOG1051|consen 630 FQE--------VSKLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLN 678 (898)
T ss_pred hhh--------hhhccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHH
Confidence 211 223322221 11122234466777777776 7889999877654444
No 305
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.34 E-value=0.021 Score=57.12 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhcc-----CCCCCCCHHHH----
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTH-----QNVDNLNLNKL---- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----~~~~~~~~~~~---- 112 (519)
....++|.|++|+|||||++.+.... ....+++++...+..++.++....+...... ...+.......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 45678899999999999999887621 1223445554434445555555444433211 11122222211
Q ss_pred -HHHHHHHh--cCCeEEEEecCc
Q 048774 113 -QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 -~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 11223333 478999999998
No 306
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.33 E-value=0.011 Score=56.71 Aligned_cols=84 Identities=20% Similarity=0.096 Sum_probs=51.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
..+++-|+|+.|+||||||..+.. ..+..-..++|++.....+.. .+..++.... ..++..++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 345666999999999999998887 445555678899987765543 2333333221 12345566666666
Q ss_pred HHhcCCe-EEEEecCc
Q 048774 118 KQLSGKK-FLLVLDDV 132 (519)
Q Consensus 118 ~~l~~~~-~LlvlDdv 132 (519)
..++... -++|+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 6665543 48999998
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.019 Score=56.01 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCC-HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFD-VIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
+.++++|+|+.|+||||++..++. ....+-..+.+++...... ....++.....+..+.. ...+.+++.+.+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 467888999999999999988876 3332223566777664422 23334444444443322 2345556555554432
Q ss_pred c-CCeEEEEecCcc
Q 048774 121 S-GKKFLLVLDDVW 133 (519)
Q Consensus 121 ~-~~~~LlvlDdv~ 133 (519)
. +..=++++|-..
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 334588889874
No 308
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.0029 Score=52.36 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
|+|.|++|+||||+|+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987
No 309
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.32 E-value=0.018 Score=52.58 Aligned_cols=74 Identities=14% Similarity=-0.011 Sum_probs=39.3
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcC-C-CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNH-F-DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
+++|.|++|+||||+|+.+.. .+... . ..+..++.............. ..+.....+...+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~-~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIER-GLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHh-hhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 467999999999999999887 43321 1 234445544433222222211 11111112245566666666655544
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.28 E-value=0.013 Score=51.35 Aligned_cols=119 Identities=18% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC---CHHHHHHHHH--H--HhhccC-CCCCC---CHH-
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF---DVIRLTKTIL--T--SIVTHQ-NVDNL---NLN- 110 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~---~~~~~~~~il--~--~l~~~~-~~~~~---~~~- 110 (519)
...+.|+|..|-||||.|..+.- +..++=..+..+-.-+.. +....+..+- . +.+... ..... +..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46778999999999999976655 333332234444333322 3333333210 0 001110 00111 111
Q ss_pred --HHHHHHHHHhcCCeE-EEEecCcc---ccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 111 --KLQEELNKQLSGKKF-LLVLDDVW---NRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 111 --~~~~~l~~~l~~~~~-LlvlDdv~---~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
......++.+.+.+| |+|||.+- +......+++...+....++..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122334455555444 99999983 223344556666666666688999999975
No 311
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.28 E-value=0.024 Score=49.74 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=56.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT-HQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~~~~~~~~~~~~l~~~l 120 (519)
+..+++|.|+.|+|||||++.+..- .. ...+.+++.... +.. .....-...+...-.+.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~-p~~G~i~~~g~~--------------i~~~~q~~~LSgGq~qrv~laral 86 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ--LI-PNGDNDEWDGIT--------------PVYKPQYIDLSGGELQRVAIAAAL 86 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC--CC-CCCcEEEECCEE--------------EEEEcccCCCCHHHHHHHHHHHHH
Confidence 4578889999999999999998862 21 122333322100 000 00000112223334455666
Q ss_pred cCCeEEEEecCccc-cCccchhhhccccCCC--CCCcEEEEEecchhHHHh
Q 048774 121 SGKKFLLVLDDVWN-RNYDDWVDFSRPLGAS--AQGSKIIVSTRNHEVAKI 168 (519)
Q Consensus 121 ~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~~ 168 (519)
..++-++++|+-.. .+......+...+... ..+..||++|.+......
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 67788999999732 1222222222222211 122567778877655443
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.28 E-value=0.027 Score=52.44 Aligned_cols=52 Identities=15% Similarity=0.129 Sum_probs=35.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
...+++|.|++|+|||+++..++..... .+=..++|++...+ ..++...++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~--~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMS--KEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCC--HHHHHHHHHH
Confidence 3468889999999999999887763222 21246778887764 4455555443
No 313
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.27 E-value=0.0015 Score=57.00 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=29.3
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCCC
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDFD 86 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~ 86 (519)
.+.+.||.|+|||.+|+.+.+ .+. +.....+-++++....
T Consensus 5 ~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 455999999999999999987 444 4455666666665443
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.024 Score=52.04 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=33.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKT 93 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 93 (519)
+..+++|.|.+|+|||++|.++... ...+-..+++++.... ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHH
Confidence 4568889999999999999988763 2223345777777765 3444443
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.033 Score=55.19 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=51.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh--cCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ--NHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 118 (519)
.+++++++|+.|+||||.+..++...... .+-..+..++..... .....++...+.++.+.. .....+.+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHHH
Confidence 45678899999999999998887632211 112345556665432 122224444444444322 33344555444444
Q ss_pred HhcCCeEEEEecCccc
Q 048774 119 QLSGKKFLLVLDDVWN 134 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~~ 134 (519)
. ...-++++|....
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3455899999854
No 316
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.25 E-value=0.003 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|.+|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999887
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.24 E-value=0.032 Score=56.29 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=46.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhh--cCCCceEEEEEcCCCC-HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQ--NHFDLKAWTCVSDDFD-VIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
.++++++|++|+||||++..++. ... ..-..+..++...... ....+....+.+..+.. ...+.+++...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh
Confidence 45778999999999999988776 332 2223566676654321 11222222333333322 233344555555433
Q ss_pred hcCCeEEEEecCc
Q 048774 120 LSGKKFLLVLDDV 132 (519)
Q Consensus 120 l~~~~~LlvlDdv 132 (519)
. ..=++++|..
T Consensus 298 -~-~~DlVlIDt~ 308 (424)
T PRK05703 298 -R-DCDVILIDTA 308 (424)
T ss_pred -C-CCCEEEEeCC
Confidence 2 2458889976
No 318
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.23 E-value=0.0053 Score=64.42 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=41.2
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
+.++|+...++.+......... ....|.|+|+.|+|||++|+.+++.. ...-...+.+++...
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-SNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVKVNCAAL 258 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-cCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeecCCC
Confidence 4678888877777654443332 45567899999999999999998731 111123455555543
No 319
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.21 E-value=0.051 Score=58.13 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=66.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
++-+.|+|++|+|||++|+.++. .....| +.++... +.. .. ...........+......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~~~----~~------~g~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------FVE----MF------VGVGASRVRDMFEQAKKA 243 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------hHH----hh------hcccHHHHHHHHHHHHhc
Confidence 34477999999999999999987 322222 1222111 110 00 011122233333334445
Q ss_pred CeEEEEecCccccCc----------cc----hhhhccccCCC--CCCcEEEEEecchhHH-Hhc---C-CCCeeecCCCC
Q 048774 123 KKFLLVLDDVWNRNY----------DD----WVDFSRPLGAS--AQGSKIIVSTRNHEVA-KIM---G-TLPAYQLKKLS 181 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~----------~~----~~~l~~~l~~~--~~~~~ilvTsr~~~~~-~~~---~-~~~~~~l~~L~ 181 (519)
.+++|+||+++.... .. ...+...+... ..+.-+|.||...+.. ... + ....+.+...+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 789999999954210 01 11111111111 1233444455544332 111 1 23567777778
Q ss_pred hhhHHHHHHHhhhC
Q 048774 182 YNDCLAIFAQHSLG 195 (519)
Q Consensus 182 ~~ea~~L~~~~~~~ 195 (519)
.++-.+++..+...
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
No 320
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0045 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-++|+|++|+||||++..+..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHH
Confidence 456999999999999999987
No 321
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.20 E-value=0.008 Score=57.97 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=33.7
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhH
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAA 223 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 223 (519)
.+++++++++|+..++....-.+-... ....+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988764432211 1222455666777779999644
No 322
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.097 Score=51.65 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.4
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.|..+++--+++..+.. +--.++||+|+|||++..++++.
T Consensus 219 ~F~k~k~~YkrvGkawK-------RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 219 DFIKGKDFYKRVGKAWK-------RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred HHHhcchHHHhcCcchh-------ccceeeCCCCCCHHHHHHHHHhh
Confidence 36666666566654433 45569999999999999999983
No 323
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.20 E-value=0.0033 Score=61.26 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....|.|+|..|+||+++|+.++.
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHH
Confidence 346678999999999999999986
No 324
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.19 E-value=0.017 Score=57.64 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
.+.++.++|++|+||||+|..++. ..+.+-..++.++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEcCc
Confidence 356777999999999999988876 333322245555544
No 325
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.018 Score=55.68 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=35.9
Q ss_pred CeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhc
Q 048774 173 PAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLL 230 (519)
Q Consensus 173 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 230 (519)
.+++++.++.+|+..+...+.-..-. .....-++...++.-..+|+|--++.++..+
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl-~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWL-LKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHH-HhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 56788999999998887765422110 0000114556677777799997776666554
No 326
>PTZ00494 tuzin-like protein; Provisional
Probab=96.18 E-value=0.034 Score=54.68 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=97.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
..||.|+++-.|+..-+.......+++++++|..|+|||+|.+.+.+.+ + -..++|++.... +-++.+...+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE----~-~paV~VDVRg~E---DtLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE----G-VALVHVDVGGTE---DTLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc----C-CCeEEEEecCCc---chHHHHHHHh
Confidence 5589999999999887777777788999999999999999999888732 2 356788887654 4466777777
Q ss_pred hccCCCCCCCH-HHHHHHH---HHHhcCCeEEEEecCccccCc-cchhhhccccCCCCCCcEEEEEecchhHHHh---cC
Q 048774 99 VTHQNVDNLNL-NKLQEEL---NKQLSGKKFLLVLDDVWNRNY-DDWVDFSRPLGASAQGSKIIVSTRNHEVAKI---MG 170 (519)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~l---~~~l~~~~~LlvlDdv~~~~~-~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~---~~ 170 (519)
+.+....-.|. +...+.. .....++.-+||+-==+-.+. ..+.+. -.+-....-|+|++--=-+.+... .+
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LP 521 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSR 521 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCc
Confidence 77654222222 2222222 223445655666531110110 111111 111122234556643322222111 12
Q ss_pred CCCeeecCCCChhhHHHHHHHh
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~ 192 (519)
.-.-|.+.+++.++|.++-.+.
T Consensus 522 RLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 522 RLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred cceeEecCCcCHHHHHHHHhcc
Confidence 2245889999999999887764
No 327
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.021 Score=59.38 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++.+.++|++|+|||.||+++++ ....+| +.+... .++... -...............+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~------vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKW------VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccc------cchHHHHHHHHHHHHHc
Confidence 445677999999999999999998 434444 222221 111111 11122233333444445
Q ss_pred CCeEEEEecCccccC----c-------cchhhhccccCCC--CCCcEEEEEecchhH-HHhc----CCCCeeecCCCChh
Q 048774 122 GKKFLLVLDDVWNRN----Y-------DDWVDFSRPLGAS--AQGSKIIVSTRNHEV-AKIM----GTLPAYQLKKLSYN 183 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~----~-------~~~~~l~~~l~~~--~~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~L~~~ 183 (519)
..++.|.+|+++... . ....++...+... ..+..+|-+|..... .... .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 789999999995311 0 1122222223211 223333333333222 1111 12356778888899
Q ss_pred hHHHHHHHhhhC
Q 048774 184 DCLAIFAQHSLG 195 (519)
Q Consensus 184 ea~~L~~~~~~~ 195 (519)
+..+.|..+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
No 328
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.16 E-value=0.017 Score=55.91 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.8
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++.|++|+||||+++.+..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999886
No 329
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0088 Score=62.24 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
..-+.++|++|+|||-+|++++- ... .-|+++..+ +++...- .++++.+++...+.-..
T Consensus 705 RSGILLYGPPGTGKTLlAKAVAT--Ecs-----L~FlSVKGP--------ELLNMYV------GqSE~NVR~VFerAR~A 763 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVAT--ECS-----LNFLSVKGP--------ELLNMYV------GQSEENVREVFERARSA 763 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHh--hce-----eeEEeecCH--------HHHHHHh------cchHHHHHHHHHHhhcc
Confidence 34566999999999999999987 222 334566543 2222221 22334444444444456
Q ss_pred CeEEEEecCccc
Q 048774 123 KKFLLVLDDVWN 134 (519)
Q Consensus 123 ~~~LlvlDdv~~ 134 (519)
.+++|.+|.+++
T Consensus 764 ~PCVIFFDELDS 775 (953)
T KOG0736|consen 764 APCVIFFDELDS 775 (953)
T ss_pred CCeEEEeccccc
Confidence 899999999975
No 330
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.14 E-value=0.02 Score=62.21 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
...+++++|++|+||||+|+.++. .....| +-++.+...+...+...- +.. ...........+... .
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~-~~~------~g~~~G~~~~~l~~~-~ 414 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHR-RTY------IGSMPGKLIQKMAKV-G 414 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccch-hcc------CCCCCcHHHHHHHhc-C
Confidence 345778999999999999999986 333332 223333322222111000 000 001111222233222 2
Q ss_pred CCeEEEEecCccccCccc----hhhhccccCC--------------CC-CCcEEEEEecchhHHHh-cCCCCeeecCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDD----WVDFSRPLGA--------------SA-QGSKIIVSTRNHEVAKI-MGTLPAYQLKKLS 181 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~----~~~l~~~l~~--------------~~-~~~~ilvTsr~~~~~~~-~~~~~~~~l~~L~ 181 (519)
..+-+++||.++...... ...+...+.. .. .+.-+|.|+.+..+... ......+.+.+++
T Consensus 415 ~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t 494 (784)
T PRK10787 415 VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYT 494 (784)
T ss_pred CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCC
Confidence 234478899996543211 1122221111 11 23334444443322111 2233678899999
Q ss_pred hhhHHHHHHHhh
Q 048774 182 YNDCLAIFAQHS 193 (519)
Q Consensus 182 ~~ea~~L~~~~~ 193 (519)
.+|-.++..++.
T Consensus 495 ~eek~~Ia~~~L 506 (784)
T PRK10787 495 EDEKLNIAKRHL 506 (784)
T ss_pred HHHHHHHHHHhh
Confidence 999988887765
No 331
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.13 E-value=0.0045 Score=54.96 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=28.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC 80 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 80 (519)
.++++|+|++|+|||||++++.. .....|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 57889999999999999999987 5556664444443
No 332
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.012 Score=51.65 Aligned_cols=120 Identities=20% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc-cCCC---CC---------CC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT-HQNV---DN---------LN 108 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~~---~~---------~~ 108 (519)
+..+++|.|+.|+|||||++.++... ....+.++++........ ...-..+.. .... .. ..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 45788899999999999999998732 122344444321111100 111111110 0000 01 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccc-cCccchhhhccccCCC-CCCcEEEEEecchhHHH
Q 048774 109 LNKLQEELNKQLSGKKFLLVLDDVWN-RNYDDWVDFSRPLGAS-AQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~ 167 (519)
.+...-.+.+.+..++-++++|+... .+......+...+... ..+..+|++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 12222345566777888999999732 1222222233332221 12567888888776544
No 333
>PRK06762 hypothetical protein; Provisional
Probab=96.13 E-value=0.0034 Score=54.71 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|++|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999999886
No 334
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.024 Score=52.16 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=70.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCCh-----hhh---c---CC---CceEEEEEcC------CCCH--------------
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDD-----RVQ---N---HF---DLKAWTCVSD------DFDV-------------- 87 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~-----~~~---~---~f---~~~~wv~~~~------~~~~-------------- 87 (519)
...++.|.||-|.|||||.+.+..-. .+. . .. ..+.||.-.. +.++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 34788899999999999999987610 000 0 01 1244443111 0111
Q ss_pred --------HHHHHHHHHHhhccCC-----CCCCCHHHHHHHHHHHhcCCeEEEEecCcc----ccCccchhhhccccCCC
Q 048774 88 --------IRLTKTILTSIVTHQN-----VDNLNLNKLQEELNKQLSGKKFLLVLDDVW----NRNYDDWVDFSRPLGAS 150 (519)
Q Consensus 88 --------~~~~~~il~~l~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~----~~~~~~~~~l~~~l~~~ 150 (519)
.+...+.+++.+...- ..-...+..+-.+.+.|.+++=|++||.-. ........++...+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1334444444433221 122334445566788899999999999852 22233344444444443
Q ss_pred CCCcEEEEEecchhHHHh
Q 048774 151 AQGSKIIVSTRNHEVAKI 168 (519)
Q Consensus 151 ~~~~~ilvTsr~~~~~~~ 168 (519)
|+.||++|-+-.....
T Consensus 189 --g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 --GKTVLMVTHDLGLVMA 204 (254)
T ss_pred --CCEEEEEeCCcHHhHh
Confidence 8889999988655433
No 335
>PRK04328 hypothetical protein; Provisional
Probab=96.11 E-value=0.016 Score=54.15 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
...++.|.|++|+|||+||.++.. .....-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCC
Confidence 456777999999999999988765 22233456888888764
No 336
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.11 E-value=0.0093 Score=58.04 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=37.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh----cCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ----NHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
...+..|+|++|+|||+++..++...... ..-..++|++....+....+. ++++.+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 34566699999999999998776421111 111368999999887766554 4444443
No 337
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.10 E-value=0.016 Score=57.31 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC----CCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV----DNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~ 118 (519)
..++.|.|.+|+|||||+.+++. .....-..++|++.... ..++. .-+..+...... ...+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 45777999999999999998886 33333346778876543 23222 223333322110 1233444444332
Q ss_pred HhcCCeEEEEecCcc
Q 048774 119 QLSGKKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~ 133 (519)
..++-++|+|.+.
T Consensus 156 --~~~~~lVVIDSIq 168 (372)
T cd01121 156 --ELKPDLVIIDSIQ 168 (372)
T ss_pred --hcCCcEEEEcchH
Confidence 2356689999983
No 338
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.014 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|.|+.|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999986
No 339
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.023 Score=57.84 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 118 (519)
...+++|+|++|+||||++..+.. ..... ...+..++..... .....+......++.... ...+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa--~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~ 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ--RFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLER 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHH
Confidence 457888999999999999988876 32222 2345555544321 112222222222222211 22333444444443
Q ss_pred HhcCCeEEEEecCcc
Q 048774 119 QLSGKKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~ 133 (519)
+.+ .-+|++|..-
T Consensus 426 -l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 -LRD-YKLVLIDTAG 438 (559)
T ss_pred -hcc-CCEEEecCCC
Confidence 333 4588899873
No 340
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.07 E-value=0.0036 Score=56.08 Aligned_cols=42 Identities=26% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCC--------CceEEEEEcCC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--------DLKAWTCVSDD 84 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 84 (519)
..+.+|.|++|+|||+++..+.........| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4678899999999999998776632221112 36778877765
No 341
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.05 E-value=0.017 Score=54.07 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++++|++|+||||+|+.+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 342
>PF13245 AAA_19: Part of AAA domain
Probab=96.03 E-value=0.0061 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++++|.|++|+|||+++.....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHH
Confidence 357788999999999955544443
No 343
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.02 E-value=0.0038 Score=67.52 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=68.2
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|+...+..+......... ....|.|+|+.|+|||++|+.++... ...-...+.+++.... ...+...++..-.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~-~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~~~~~~~lfg~~~ 452 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ-SDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-AGLLESDLFGHER 452 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC-CCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-hhHhhhhhcCccc
Confidence 467888776666443332222 44577899999999999999998732 1112244555655432 1111222222111
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCC-----------CCCcEEEEEecch
Q 048774 100 THQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS-----------AQGSKIIVSTRNH 163 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTsr~~ 163 (519)
.... . ........+. ...+=.|+||+++.........+...+... ..+.|||.||...
T Consensus 453 ~~~~--g-~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 453 GAFT--G-ASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccc--c-cccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1100 0 0001111111 123457999999766544444444433211 1356888887653
No 344
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.033 Score=54.18 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=54.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC----CCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV----DNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~ 118 (519)
..++.|-|.+|+|||||.-++.. ++...- .+.+|+..+...- .+--+.++..+... .+-++++....+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 45677999999999999999888 555554 7888887765322 22334455433321 23444554444444
Q ss_pred HhcCCeEEEEecCccc
Q 048774 119 QLSGKKFLLVLDDVWN 134 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~~ 134 (519)
.++-++|+|.++.
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 5788999999843
No 345
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.027 Score=56.16 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....+.|.|+.|+|||||++.+.+. . ..+.++.+-+++.. ...++...++..-.... ..+.......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4567889999999999999999862 1 22466667777664 34445555433311110 1111112211
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11133333 578999999999
No 346
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.01 E-value=0.0048 Score=64.13 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=43.4
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
.+.++|+...++.+.+....... ....|.|+|..|+|||++|+.+++. -...-...+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~-~~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA-SDLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccC
Confidence 34578988887776665444333 4567789999999999999999873 1212234556666654
No 347
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.00 E-value=0.0037 Score=56.69 Aligned_cols=88 Identities=28% Similarity=0.301 Sum_probs=59.3
Q ss_pred hhhhccCCcccEEeecCc--ccc-ccCccccCCCcCcEEeccCCCCccc--CcchhcCCCCcEEeccCCCchhHh-H--H
Q 048774 422 LTELFKLQRLRIFSLRGY--HIS-ELPDSVGDLRYLRHLNLSRTEIKTL--PESVSKLYNLHTLLLEDCRRLKKL-C--A 493 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~l~l~~~~i~~l--p~~~~~l~~L~~l~l~~~~~~~~l-p--~ 493 (519)
..++..+++|+.|.++.| .+. .++......++|+++++++|+|..+ -+.+.++.+|..|++.+|.....- + .
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 344557888999999998 555 5555555668999999999987631 123567788888898888544421 1 1
Q ss_pred hhcccccCCEEEccCC
Q 048774 494 AMGNLIKLHHLNNSNT 509 (519)
Q Consensus 494 ~~~~l~~L~~l~l~~~ 509 (519)
-|.-+++|++|+--..
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 2556678888765543
No 348
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.00 E-value=0.028 Score=50.50 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF 73 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f 73 (519)
+..-|.++|..|+|||.|++++.+ .+.+..
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~--e~~~~g 113 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLN--EYADEG 113 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHH--HHHhcC
Confidence 445677999999999999999998 555554
No 349
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.00 E-value=0.0034 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=18.1
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
|.|+|++|+|||++|..++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999887
No 350
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.99 E-value=0.013 Score=51.68 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999887
No 351
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.99 E-value=0.0056 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++++.|++|+||||+|+.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999986
No 352
>PTZ00035 Rad51 protein; Provisional
Probab=95.98 E-value=0.022 Score=55.58 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=32.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh----cCCCceEEEEEcCCCCHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ----NHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~ 89 (519)
...+..|+|++|+|||+|+..++...... ..-..++|++....+....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er 168 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER 168 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH
Confidence 34566699999999999998876422211 1123567888877655554
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.98 E-value=0.027 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999887
No 354
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.97 E-value=0.011 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999887
No 355
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.016 Score=52.22 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++-|.++|++|+|||.||+++++
T Consensus 187 dpprgvllygppg~gktml~kava~ 211 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVAN 211 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhh
Confidence 4667788999999999999999998
No 356
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.97 E-value=0.0061 Score=55.87 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999876
No 357
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.018 Score=52.27 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=22.5
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++-+.++|++|.|||-+|+++++
T Consensus 209 dppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc
Confidence 3567788999999999999999998
No 358
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.94 E-value=0.01 Score=51.74 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCcccEEeecCccccccC--ccccCCCcCcEEeccCCCCcccCc----chhcCCCCcEEeccC
Q 048774 428 LQRLRIFSLRGYHISELP--DSVGDLRYLRHLNLSRTEIKTLPE----SVSKLYNLHTLLLED 484 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~l~l~~~~i~~lp~----~~~~l~~L~~l~l~~ 484 (519)
+++|..|.+.+|++..+. ..+..++.|++|.+-+|.++..+. -+.++++|++||.++
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 334444444444444321 112333444444444444432221 133444455554443
No 359
>PRK06547 hypothetical protein; Provisional
Probab=95.93 E-value=0.0054 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456777999999999999999986
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.93 E-value=0.0077 Score=54.75 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37888999999999999998864
No 361
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.92 E-value=0.0035 Score=61.67 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=32.9
Q ss_pred hccccccccceeeeEeecCCCCC-----------CCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 15 AAAHDVFPCRKQAFIWAASPEET-----------MPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 15 ~~~~~~f~gR~~~~~~l~~~~~~-----------~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+..++|.++....+.-.+.. ..+-.++.++++|++|+|||++|+.+..
T Consensus 8 ~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~ 69 (441)
T TIGR00390 8 AELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK 69 (441)
T ss_pred HHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 34445566776665555322111 0112346778999999999999999987
No 362
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.92 E-value=0.029 Score=53.58 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCCCCeEEEEecCCchHHHHHHHHhCChh-hhcCCCceE-E---EEEcCCC-----CHHHHHHHHHHHhhcc----CCCC
Q 048774 40 EWPEPMHVFAGFGGLGKTTLARLAYNDDR-VQNHFDLKA-W---TCVSDDF-----DVIRLTKTILTSIVTH----QNVD 105 (519)
Q Consensus 40 ~~~~~~~~I~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~-w---v~~~~~~-----~~~~~~~~il~~l~~~----~~~~ 105 (519)
+..-+.|.+.|.+|+|||.||-++.-.+. .+..|..++ . +.+++.. ..++-+.-+++.+... ....
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 34567888999999999999865543211 223343222 1 2333321 1222222222222211 1111
Q ss_pred CCCHHHHHHHH-H---------HHhcCC---eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 106 NLNLNKLQEEL-N---------KQLSGK---KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 106 ~~~~~~~~~~l-~---------~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
... +...+.+ . .+.+++ +.++|+|.+++.+. .++..-+...+.|+||+.|--..
T Consensus 322 ~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp---heikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 322 EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP---HELKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH---HHHHHHHHhccCCCEEEEcCCHH
Confidence 112 2222221 1 112333 56999999977654 44555566677899999887553
No 363
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.89 E-value=0.021 Score=58.24 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=49.5
Q ss_pred CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-Cce-EEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCH----HH
Q 048774 39 PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLK-AWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNL----NK 111 (519)
Q Consensus 39 ~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~-~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~----~~ 111 (519)
|-+.....+|+|++|+|||||+..+++ .+.... +.. +.+-+++.. .+.++.+.+-..+........... ..
T Consensus 412 PIGkGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 412 PIGKGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred ccccCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 344567778999999999999999987 443322 333 344555543 333333222111111111111111 11
Q ss_pred HHHHHHHHh--cCCeEEEEecCc
Q 048774 112 LQEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 112 ~~~~l~~~l--~~~~~LlvlDdv 132 (519)
..-.+.+++ .++.+||++|++
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCc
Confidence 112223333 578999999998
No 364
>PF13479 AAA_24: AAA domain
Probab=95.87 E-value=0.027 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=23.4
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
-.++|+|++|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 34569999999999999876 34566666554
No 365
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.1 Score=55.26 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=81.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
-++-+.++||+|+|||-||++++.+.. +=|++++.. +++..+... ......+.....-.
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS--------EFvE~~~g~------~asrvr~lf~~ar~ 401 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS--------EFVEMFVGV------GASRVRDLFPLARK 401 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH--------HHHHHhccc------chHHHHHHHHHhhc
Confidence 356677999999999999999998432 223444432 111111111 11112222222334
Q ss_pred CCeEEEEecCccccC---------------ccchhhhccccCCCCC-CcEEEEEec-chhHHHh----cC-CCCeeecCC
Q 048774 122 GKKFLLVLDDVWNRN---------------YDDWVDFSRPLGASAQ-GSKIIVSTR-NHEVAKI----MG-TLPAYQLKK 179 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~---------------~~~~~~l~~~l~~~~~-~~~ilvTsr-~~~~~~~----~~-~~~~~~l~~ 179 (519)
..++++.+|+++... ...+.++......+.. +..|++.+. ..++... .+ .++.+.++.
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 568899999884211 0112222222222222 223444443 3333211 11 246677888
Q ss_pred CChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 180 LSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 180 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
-+.....++|.-|+..-... .+..+..+ |+..+.|++=|
T Consensus 482 p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 88888889998887443221 22244455 88888888854
No 366
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.86 E-value=0.051 Score=50.24 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEecCccc----cCccchhhhccccCCCCCCcEEEEEecchhHHHhcC
Q 048774 107 LNLNKLQEELNKQLSGKKFLLVLDDVWN----RNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG 170 (519)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~----~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 170 (519)
...+...-.+.+.|.+++=++++|+--+ ..+.+.-++...+.. ..|..||++.-+-..+...+
T Consensus 140 SGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 140 SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhC
Confidence 3445556667888889999999998621 112222223333322 23667899998887766654
No 367
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.85 E-value=0.018 Score=50.35 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=41.1
Q ss_pred hccCCcccEEeecCccccccCccccC-CCcCcEEeccCCCCcccCc--chhcCCCCcEEeccCCCchhHhHH----hhcc
Q 048774 425 LFKLQRLRIFSLRGYHISELPDSVGD-LRYLRHLNLSRTEIKTLPE--SVSKLYNLHTLLLEDCRRLKKLCA----AMGN 497 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~lp~~~~~-l~~L~~l~l~~~~i~~lp~--~~~~l~~L~~l~l~~~~~~~~lp~----~~~~ 497 (519)
+..++.|+.|.+..|.|+.+.+.+.. +++|..|.+.+|+|.++-. .+..++.|++|.+-+| .....+. -+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEe
Confidence 34555566666666666655444432 3446666666665553321 2334555666655555 2332221 1445
Q ss_pred cccCCEEEcc
Q 048774 498 LIKLHHLNNS 507 (519)
Q Consensus 498 l~~L~~l~l~ 507 (519)
+++|+.||..
T Consensus 139 lp~l~~LDF~ 148 (233)
T KOG1644|consen 139 LPSLRTLDFQ 148 (233)
T ss_pred cCcceEeehh
Confidence 5566666544
No 368
>PRK15453 phosphoribulokinase; Provisional
Probab=95.84 E-value=0.05 Score=50.85 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=42.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC--CHHHHHHHHH--HHhhc---cCCCCCCCHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF--DVIRLTKTIL--TSIVT---HQNVDNLNLNKLQE 114 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il--~~l~~---~~~~~~~~~~~~~~ 114 (519)
...+++|+|.+|+||||+|+.+.. .++..-...+.++..... +..++-..+. ..-+. +..++..+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 456788999999999999998875 333221124444444332 2222222221 11111 11235667777777
Q ss_pred HHHHHhc
Q 048774 115 ELNKQLS 121 (519)
Q Consensus 115 ~l~~~l~ 121 (519)
.++....
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7776554
No 369
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.83 E-value=0.026 Score=51.11 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=50.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....++|.|.+|+|||+|+.++.+. . .-+.++++.+++. ....++.+.+...-.... ..+.......
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~--~--~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANN--Q--DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--C--TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhc--c--cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 4467789999999999999999872 2 2245578888765 345555555533211100 1011111111
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+.+ .++++|+++||+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hccchhhhHHHhhcCCceeehhhhh
Confidence 11112222 589999999998
No 370
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.82 E-value=0.026 Score=60.50 Aligned_cols=84 Identities=17% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~~ 118 (519)
..++.|+|++|+||||||..++. .....=..++|++.....+.. .+.+++.... ......+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 45666999999999999987665 222333567898887765532 4444443221 123444555556666
Q ss_pred HhcC-CeEEEEecCcc
Q 048774 119 QLSG-KKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~-~~~LlvlDdv~ 133 (519)
.++. +.-|+|+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 5544 56699999984
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.82 E-value=0.004 Score=50.53 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCC
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFD 74 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~ 74 (519)
+.|.|.+|+|||++|+.+++ .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56999999999999999998 5555553
No 372
>PRK07667 uridine kinase; Provisional
Probab=95.81 E-value=0.011 Score=52.88 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+|+|.|.+|+||||+|+.+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345777999999999999999887
No 373
>PRK03839 putative kinase; Provisional
Probab=95.81 E-value=0.0055 Score=54.23 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 374
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.81 E-value=0.0067 Score=53.26 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|+|++|+||||+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346788999999999999999987
No 375
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.78 E-value=0.0073 Score=54.79 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 345777999999999999999986
No 376
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.77 E-value=0.022 Score=53.67 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=35.7
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
....+++|+|.+|+|||++|.++.. ....+...++|++....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 3567888999999999999999887 55666788999999875
No 377
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.77 E-value=0.035 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|.|+.|+|||||++.+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456888999999999999999987
No 378
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.75 E-value=0.0065 Score=57.35 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=76.7
Q ss_pred hcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-----cCccccCCCcCcEEeccCCCCc-ccCc
Q 048774 396 YDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-----LPDSVGDLRYLRHLNLSRTEIK-TLPE 469 (519)
Q Consensus 396 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~l~l~~~~i~-~lp~ 469 (519)
..++.|..+.+..+.=...+. ......+..+++|++||+..|.++. +...++.+++|+.|++..|.+. .-..
T Consensus 182 ~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 344566666666554111111 2233445699999999999998873 3455778899999999998775 3222
Q ss_pred chh-----cCCCCcEEeccCCCchhH----hHHhhcccccCCEEEccCCC
Q 048774 470 SVS-----KLYNLHTLLLEDCRRLKK----LCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 470 ~~~-----~l~~L~~l~l~~~~~~~~----lp~~~~~l~~L~~l~l~~~~ 510 (519)
.+. ..++|+++.+.+|....+ +-..+...+.|..|++++|.
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 221 368899999999843332 33456778999999999998
No 379
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.75 E-value=0.061 Score=50.22 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhh--hcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRV--QNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNK 111 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~ 111 (519)
+..+.+.|.|.+|+|||+|+.++.+...+ +++-+.++++-+++.. +..++...+...=.... ..+......
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 35567789999999999999998873221 1223677888888764 44555555544311110 111122221
Q ss_pred H-----HHHHHHHh---cCCeEEEEecCcc
Q 048774 112 L-----QEELNKQL---SGKKFLLVLDDVW 133 (519)
Q Consensus 112 ~-----~~~l~~~l---~~~~~LlvlDdv~ 133 (519)
. .-.+.+++ .++++|+++||+.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1 12233444 3689999999993
No 380
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.0066 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.||-|+||||||+++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 46888999999999999999988
No 381
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.74 E-value=0.026 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++.+|+|.+|+||||++..+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 57888999999999999988876
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.73 E-value=0.059 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 445999999999999987764
No 383
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.73 E-value=0.0077 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999876
No 384
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.024 Score=58.59 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=46.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
+.-+.++|++|+|||.||.+++. . + ..-++++..+ +++....+. +++..++...+.-.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~--~----~-~~~fisvKGP--------ElL~KyIGa------SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIAS--N----S-NLRFISVKGP--------ELLSKYIGA------SEQNVRDLFERAQSA 759 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHh--h----C-CeeEEEecCH--------HHHHHHhcc------cHHHHHHHHHHhhcc
Confidence 44566999999999999999887 2 1 2335666654 233333222 234455555555567
Q ss_pred CeEEEEecCccc
Q 048774 123 KKFLLVLDDVWN 134 (519)
Q Consensus 123 ~~~LlvlDdv~~ 134 (519)
+++++.+|.+++
T Consensus 760 ~PCiLFFDEfdS 771 (952)
T KOG0735|consen 760 KPCILFFDEFDS 771 (952)
T ss_pred CCeEEEeccccc
Confidence 999999999964
No 385
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.72 E-value=0.0083 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457888999999999999999987
No 386
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.72 E-value=0.011 Score=54.44 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCCCHHHHHHHHHHHhhc-------c-------CCCC-
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDFDVIRLTKTILTSIVT-------H-------QNVD- 105 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~l~~-------~-------~~~~- 105 (519)
...+++|.|++|+|||++|.++.. ..... =..++|++...+. ..+.+.+- .++. . ....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 456888999999999999988765 22222 3467888876653 33333321 2211 0 0001
Q ss_pred ----CCCHHHHHHHHHHHhcC-CeEEEEecCcc
Q 048774 106 ----NLNLNKLQEELNKQLSG-KKFLLVLDDVW 133 (519)
Q Consensus 106 ----~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 133 (519)
..+.+.+...+.+.++. +.-.+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 35677777777766654 44689999973
No 387
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.076 Score=47.58 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCeEEEEecCccccC-ccchhhhccccCC-CCCCcEEEEEecchhHHHhcCCCCee
Q 048774 112 LQEELNKQLSGKKFLLVLDDVWNRN-YDDWVDFSRPLGA-SAQGSKIIVSTRNHEVAKIMGTLPAY 175 (519)
Q Consensus 112 ~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~-~~~~~~ilvTsr~~~~~~~~~~~~~~ 175 (519)
-+..+.+.+-=+|-+.|||..++.= ...+..+...+.. ..+++-+|+.|-.+.++.....+.++
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3444555555668899999985431 1122222222221 12466788888888887776544433
No 388
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.71 E-value=0.037 Score=49.88 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
+..+++|.|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999998873
No 389
>PRK04040 adenylate kinase; Provisional
Probab=95.71 E-value=0.0074 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.1
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5778999999999999999987
No 390
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.70 E-value=0.0085 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|.|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999885
No 391
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.69 E-value=0.035 Score=52.71 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
.+-+++|.|+.|+||||+|+.+.. ...... ..+..++...-....+..... ..+.....+...+.+.+...+...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHHH
Confidence 345667999999999999987764 332211 124444444332222222211 111111223556677777777766
Q ss_pred hcCC
Q 048774 120 LSGK 123 (519)
Q Consensus 120 l~~~ 123 (519)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 392
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.03 Score=48.21 Aligned_cols=121 Identities=17% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
+..+++|.|+.|+|||||++.+... .. ...+.++++........ .......+..... -...+...-.+...+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKLP--LEELRRRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccCC--HHHHHhceEEEee--CCHHHHHHHHHHHHHh
Confidence 3478889999999999999999873 22 23444544332111100 0011111111110 1122333334555666
Q ss_pred CCeEEEEecCccc-cCccchhhhccccCCC-CCCcEEEEEecchhHHHhc
Q 048774 122 GKKFLLVLDDVWN-RNYDDWVDFSRPLGAS-AQGSKIIVSTRNHEVAKIM 169 (519)
Q Consensus 122 ~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~~~~ilvTsr~~~~~~~~ 169 (519)
..+-++++|+... .+......+...+... ..+..++++|.+.......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6788999999842 1222223333333221 1246688888776665443
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.68 E-value=0.0081 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|+|++|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 367999999999999999987
No 394
>PRK08149 ATP synthase SpaL; Validated
Probab=95.67 E-value=0.073 Score=53.22 Aligned_cols=87 Identities=15% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccC------CCCCCCHHH---
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQ------NVDNLNLNK--- 111 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~--- 111 (519)
....++|.|.+|+|||||+..+++.. .-+.++...++.. .+..++....+....... ..+......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 45778899999999999999988721 2233344445444 345556666655322111 111212211
Q ss_pred --HHHHHHHHh--cCCeEEEEecCc
Q 048774 112 --LQEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 112 --~~~~l~~~l--~~~~~LlvlDdv 132 (519)
..-.+.+++ .++++|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 112223333 478999999999
No 395
>PRK06217 hypothetical protein; Validated
Probab=95.67 E-value=0.015 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|.+|+||||+|+++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 396
>COG4240 Predicted kinase [General function prediction only]
Probab=95.66 E-value=0.049 Score=48.44 Aligned_cols=82 Identities=16% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-CceEEEEEcCCCCHHHHHHHHHHHhh----ccCCCCCCCHHHHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVSDDFDVIRLTKTILTSIV----THQNVDNLNLNKLQEE 115 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~----~~~~~~~~~~~~~~~~ 115 (519)
+.+-+++|.|+.|+||||++..+++ ...... ..+.-.+...-.-..+-...++++.. ....+..+++..+...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~--~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVR--LLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHH--HHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 3455666999999999999999988 333333 35555555544333333344444431 1122356777777877
Q ss_pred HHHHhcCCe
Q 048774 116 LNKQLSGKK 124 (519)
Q Consensus 116 l~~~l~~~~ 124 (519)
+....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 777776653
No 397
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.66 E-value=0.0076 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367999999999999999887
No 398
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.65 E-value=0.021 Score=51.51 Aligned_cols=121 Identities=15% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHH---HHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLN---KLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~---~~~~~l~~ 118 (519)
..++.+|.|+.|.||||+.+.+..-. +..+. .+++.... ....+...++..+...+. ...... .....+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~--~~l~~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY--ATLPIFNRLLSRLSNDDS-MERNLSTFASEMSETAY 101 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh--cCccChhheeEecCCccc-cchhhhHHHHHHHHHHH
Confidence 34788899999999999998876421 11111 11221111 111222233333222211 111111 11111222
Q ss_pred H--hcCCeEEEEecCccccC-ccc----hhhhccccCCCCCCcEEEEEecchhHHHhcC
Q 048774 119 Q--LSGKKFLLVLDDVWNRN-YDD----WVDFSRPLGASAQGSKIIVSTRNHEVAKIMG 170 (519)
Q Consensus 119 ~--l~~~~~LlvlDdv~~~~-~~~----~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 170 (519)
. +..++-|+++|+..... ..+ ...+...+.. .++.+|++|-+.++.....
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2 23567899999984321 111 1222333332 2788999999888776654
No 399
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.65 E-value=0.012 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|+|++|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 400
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.65 E-value=0.022 Score=59.77 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++.+|.|.+|+||||++..+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 57888999999999999988775
No 401
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.013 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=21.8
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNH 72 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~ 72 (519)
.++.++|.+|+||||+|.++.+ .....
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence 4555999999999999999987 44443
No 402
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.086 Score=49.53 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=47.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
+...+++.|++|+||||++..+.. .....=..+.+++..... ......+.....+..+.. ...+.+.+...+...-
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHH
Confidence 346888999999999999988876 333222345566655332 111122222222222211 2234445544443332
Q ss_pred c-CCeEEEEecCccc
Q 048774 121 S-GKKFLLVLDDVWN 134 (519)
Q Consensus 121 ~-~~~~LlvlDdv~~ 134 (519)
+ .+.=++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2 2345889998843
No 403
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.028 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCCh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDD 67 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~ 67 (519)
=++-|.++||+|.|||-||++++.+.
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhccc
Confidence 46678899999999999999999854
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.62 E-value=0.089 Score=48.49 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
....++|.|++|+|||++|..+... ....-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4567889999999999999887652 2223356788887554
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.072 Score=53.24 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
...+++++|+.|+||||++..+............+..+..... ....+.+....+.++.+.. ...+..+....+. .+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~-~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLH-EL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHH-Hh
Confidence 4578889999999999999887752111222233344443332 2233334444444443332 2333444333333 23
Q ss_pred cCCeEEEEecCc
Q 048774 121 SGKKFLLVLDDV 132 (519)
Q Consensus 121 ~~~~~LlvlDdv 132 (519)
.++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 443 45667765
No 406
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0063 Score=32.82 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=10.4
Q ss_pred ccEEeecCccccccCcccc
Q 048774 431 LRIFSLRGYHISELPDSVG 449 (519)
Q Consensus 431 L~~L~l~~~~~~~lp~~~~ 449 (519)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555443
No 407
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.58 E-value=0.043 Score=51.13 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
...++++|..|+|||+-++.+++. .+..+-+..+..+....+...+........ .....+....+...+.+
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~---~~~~~d~~~~~~~~l~~ 164 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT---DGTINDLTERLMIRLRD 164 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHcc
Confidence 347889999999999999999872 122222344444455555555555544442 22334455556666688
Q ss_pred CeEEEEecCccccCccchhhhccccCCC
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGAS 150 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~ 150 (519)
..-++++|+.+...+..++.++......
T Consensus 165 ~~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 165 TVRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred CcceeeeehhhccChHHHHHHHHHHHhh
Confidence 8899999999877777777766554443
No 408
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.0013 Score=60.07 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=54.3
Q ss_pred cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCc--chhcCCCCcEEeccCCCchhHhHHh-----hcccc
Q 048774 427 KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPE--SVSKLYNLHTLLLEDCRRLKKLCAA-----MGNLI 499 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~--~~~~l~~L~~l~l~~~~~~~~lp~~-----~~~l~ 499 (519)
+|+.|++|.|+-|.|+.+-+ +...+.|+.|+|+.|.|..+-+ -+.++++|++|.|..|...+.-+.. +.-|+
T Consensus 39 kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 88888888888888887733 6667788888888887765543 2457788888888777665554331 44556
Q ss_pred cCCEEE
Q 048774 500 KLHHLN 505 (519)
Q Consensus 500 ~L~~l~ 505 (519)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 666664
No 409
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.56 E-value=0.068 Score=49.24 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTI 94 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 94 (519)
...++.|.|++|+||||+|.+++... .+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34577899999999999986665521 1222 4566777443 344544444
No 410
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.54 E-value=0.0089 Score=53.02 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 411
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.53 E-value=0.0068 Score=63.08 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=38.6
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
+.|+|+...++.+......... ....+.|+|..|+||+.+|+.++.. -...-...+.+++...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~ 266 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-LDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASI 266 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-CCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccC
Confidence 4577887765555443322222 3456789999999999999998752 1111123455666554
No 412
>PRK05439 pantothenate kinase; Provisional
Probab=95.52 E-value=0.046 Score=52.33 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLTKTILTSIV-THQNVDNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~~l~~ 118 (519)
.+-+++|.|.+|+||||+|+.+.. ...... ..+.-++...-....+.+.. ..+. ....+...+.+.+...+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 445667999999999999998876 333221 23344444433222222211 1111 1122355677777777777
Q ss_pred HhcCCe
Q 048774 119 QLSGKK 124 (519)
Q Consensus 119 ~l~~~~ 124 (519)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 766664
No 413
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.51 E-value=0.055 Score=54.62 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhcc------CCCCCCCHHHH-
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTH------QNVDNLNLNKL- 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~- 112 (519)
+..+.++|.|.+|+|||+|+.++.+... +.+-+.++++-+++.. ...++...+...-... ...+.......
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3567778999999999999998887322 1244677777777653 4455555554321110 01111222211
Q ss_pred ----HHHHHHHh---cCCeEEEEecCc
Q 048774 113 ----QEELNKQL---SGKKFLLVLDDV 132 (519)
Q Consensus 113 ----~~~l~~~l---~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++|++
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12233444 378999999999
No 414
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.49 E-value=0.016 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++.+++|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456777999999999999999987
No 415
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.49 E-value=0.014 Score=57.32 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
....++|+|+.|+||||++..+.+ .+.......++. +..+.... .... ..+....+ ...+.....+.++..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEYV--HRNK-RSLINQRE-VGLDTLSFANALRAALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhhh--ccCc-cceEEccc-cCCCCcCHHHHHHHhhc
Confidence 357888999999999999999886 444344444432 33221111 0000 00001111 11122345666778888
Q ss_pred CCeEEEEecCccc
Q 048774 122 GKKFLLVLDDVWN 134 (519)
Q Consensus 122 ~~~~LlvlDdv~~ 134 (519)
..+=.|++|.+.+
T Consensus 194 ~~pd~i~vgEird 206 (343)
T TIGR01420 194 EDPDVILIGEMRD 206 (343)
T ss_pred cCCCEEEEeCCCC
Confidence 8899999999943
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.49 E-value=0.011 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.4
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|.|++|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5788999999999999999987
No 417
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.48 E-value=0.009 Score=65.86 Aligned_cols=134 Identities=15% Similarity=0.093 Sum_probs=66.5
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhh--cCCCceEEEEEcCCC----CHHH-HHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQ--NHFDLKAWTCVSDDF----DVIR-LTKTILTSIVTHQNVDNLNLNKLQEELN 117 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~----~~~~-~~~~il~~l~~~~~~~~~~~~~~~~~l~ 117 (519)
-+.|+|.+|+||||+...++-....+ ..=+..+++.+.... ...+ .+...+........ ..........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHHH
Confidence 45699999999999998776521111 111344444443211 1111 11222222222211 1111122224
Q ss_pred HHhcCCeEEEEecCccccCccc----hhhhccccCCCCCCcEEEEEecchhHHHhcCCCCeeecCCCChh
Q 048774 118 KQLSGKKFLLVLDDVWNRNYDD----WVDFSRPLGASAQGSKIIVSTRNHEVAKIMGTLPAYQLKKLSYN 183 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~~~~~~~l~~L~~~ 183 (519)
..++..++++.+|.++...... ...+...++.. +.+++|+|+|.............+.+..+.+.
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~-~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~ 368 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY-PDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDL 368 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc-cCCeEEEEeccchhhhhhhhhhhccchhhhHH
Confidence 6778889999999986543222 22222223332 57889999998654433322333444444433
No 418
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.011 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.||+|+|||||++++..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~ 26 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLE 26 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46778999999999999999987
No 419
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.46 E-value=0.091 Score=50.69 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=48.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC-CCCHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD-DFDVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....++|.|+.|+|||||++.+.+. .. -+..+..-++. ..+..++....+..-.... ..+.......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~--~~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARG--TT--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 4567889999999999999998872 22 13334444443 3455555555544321110 1111111111
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+.+ .++++|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 11122333 478999999998
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.45 E-value=0.012 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.6
Q ss_pred CCeEEEEecCCchHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAY 64 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~ 64 (519)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4677899999999999999876
No 421
>PHA00729 NTP-binding motif containing protein
Probab=95.45 E-value=0.009 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.244 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++|+|.+|+||||||..+.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999887
No 422
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.45 E-value=0.0087 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 423
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.056 Score=44.76 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=42.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
.+-+.|+|-+|+||||+|.+++. . + ..-|++++.-..-.++ .........-..-+.+.+.+.+...+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~----~-~~~~i~isd~vkEn~l----~~gyDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--K----T-GLEYIEISDLVKENNL----YEGYDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--H----h-CCceEehhhHHhhhcc----hhcccccccCccccHHHHHHHHHHHHhc
Confidence 45677999999999999999885 2 1 2345666544322222 2222222223455667777777777655
Q ss_pred C
Q 048774 123 K 123 (519)
Q Consensus 123 ~ 123 (519)
.
T Consensus 76 G 76 (176)
T KOG3347|consen 76 G 76 (176)
T ss_pred C
Confidence 3
No 424
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.44 E-value=0.015 Score=57.56 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-------CHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-------DVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-------~~~~~~ 91 (519)
..-|||+.+++.|...++....+...+.+|.|.=|+|||.+++.+.. ...++=-.+..++++... ....++
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~--~A~~~~fvvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRE--RALEKGFVVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred ceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHH--HHHHcCCEEEEEecCCCcccccccccHHHHH
Confidence 34599999999999888877778888899999999999999998876 333322256666666532 456788
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHH
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELN 117 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~ 117 (519)
+++++.+.....++......+.+.+.
T Consensus 103 r~l~~nL~t~~~p~G~al~~ild~wi 128 (416)
T PF10923_consen 103 RELMRNLSTKTKPEGGALRSILDRWI 128 (416)
T ss_pred HHHHHhcCCCCCCCchHHHHHHHHHH
Confidence 88888888776544434555444443
No 425
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.44 E-value=0.016 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++++|+|++|+|||||++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 567788999999999999999875
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.44 E-value=0.0081 Score=65.11 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+.++|+|+.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 347888999999999999988865
No 427
>PRK00625 shikimate kinase; Provisional
Probab=95.43 E-value=0.0094 Score=52.08 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|+|++|+||||+++.+.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999976
No 428
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0052 Score=33.14 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=10.5
Q ss_pred CcEEeccCCCCcccCcchh
Q 048774 454 LRHLNLSRTEIKTLPESVS 472 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~ 472 (519)
|++|++++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5555555555555555543
No 429
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.067 Score=53.57 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC------CCCCCCHHH---
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ------NVDNLNLNK--- 111 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~--- 111 (519)
+....++|.|..|+|||||+..++... . ....++.....+..+..+.....+..-+... ..+......
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~--~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA--K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC--C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 355678899999999999999998732 1 1123333333333556666555544421111 111111111
Q ss_pred --HHHHHHHHh--cCCeEEEEecCcc
Q 048774 112 --LQEELNKQL--SGKKFLLVLDDVW 133 (519)
Q Consensus 112 --~~~~l~~~l--~~~~~LlvlDdv~ 133 (519)
..-.+.+++ .++++|+++|++.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchH
Confidence 112222333 4789999999994
No 430
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.40 E-value=0.012 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999976
No 431
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.40 E-value=0.093 Score=51.38 Aligned_cols=88 Identities=18% Similarity=0.060 Sum_probs=48.6
Q ss_pred CCCeEEEEecCCchHHH-HHHHHhCChhhhcCCCceEEEEEcCCCCHH-HHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTT-LARLAYNDDRVQNHFDLKAWTCVSDDFDVI-RLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
+.+++.++||.|+|||| ||+.+++... ...=..+..++.....--. +.++.-.+-++.+.. -..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh
Confidence 36888899999999995 5555544111 1222467777777654322 333333333444332 445555555554433
Q ss_pred hcCCeEEEEecCcc
Q 048774 120 LSGKKFLLVLDDVW 133 (519)
Q Consensus 120 l~~~~~LlvlDdv~ 133 (519)
++. =+|.+|-+.
T Consensus 280 -~~~-d~ILVDTaG 291 (407)
T COG1419 280 -RDC-DVILVDTAG 291 (407)
T ss_pred -hcC-CEEEEeCCC
Confidence 333 466677774
No 432
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.39 E-value=0.017 Score=51.27 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=27.3
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
++|.|++|+|||++|.++... ....=..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCC
Confidence 569999999999999988763 2222356778877654
No 433
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.39 E-value=0.057 Score=53.99 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC------CCCCCCHHHH---
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ------NVDNLNLNKL--- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~--- 112 (519)
....++|.|..|+|||||++.+... .. ....++.....+.....++....+..-.... ..+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~--~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARN--TD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4567889999999999999988873 21 2223333333334455555555443321111 1111122211
Q ss_pred --HHHHHHHh--cCCeEEEEecCc
Q 048774 113 --QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 --~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 11233444 478999999999
No 434
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.096 Score=47.23 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
+..+++|.|+.|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4578889999999999999998873
No 435
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.0091 Score=50.09 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++.|.|++|+||||+|+.+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe 22 (179)
T COG1102 2 VITISGLPGSGKTTVARELAE 22 (179)
T ss_pred EEEeccCCCCChhHHHHHHHH
Confidence 356999999999999999987
No 436
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.38 E-value=0.1 Score=52.31 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....++|.|.+|+|||||...+++.. .-+.++++-+++.. ...++....+..-.... ..+.......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 45778899999999999999998732 22567777777664 34444444332211000 1111111111
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++|++
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11123333 478999999999
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.38 E-value=0.043 Score=51.58 Aligned_cols=114 Identities=18% Similarity=0.043 Sum_probs=56.6
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc-cCC-----CCCCCHHHHHHHHH
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT-HQN-----VDNLNLNKLQEELN 117 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~-----~~~~~~~~~~~~l~ 117 (519)
.-++|.|+.|+|||||.+.+.. .+.. ..+.+++....-... +...++...... +.. .+..+...-..-+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~--~~~~-~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR--ILST-GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC--ccCC-CCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 4667999999999999999997 3322 234444321111111 111222221111 110 01111111111223
Q ss_pred HHhc-CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHH
Q 048774 118 KQLS-GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA 166 (519)
Q Consensus 118 ~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 166 (519)
..+. ..+-++++|.+. .......+...+. .|..+|+||-+..+.
T Consensus 188 ~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 3332 578899999983 3333444444432 477799998875553
No 438
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.36 E-value=0.012 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36888999999999999999874
No 439
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.36 E-value=0.063 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++|.|++|+|||||++.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456777999999999999999886
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.35 E-value=0.077 Score=54.81 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC--------------CCCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ--------------NVDNL 107 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------------~~~~~ 107 (519)
...+++|.|++|+|||||+.+++. ....+-..+++++..+. ..++.... +.++... .+...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 455777999999999999998887 33333356777777764 44444333 2222111 11223
Q ss_pred CHHHHHHHHHHHhcC-CeEEEEecCc
Q 048774 108 NLNKLQEELNKQLSG-KKFLLVLDDV 132 (519)
Q Consensus 108 ~~~~~~~~l~~~l~~-~~~LlvlDdv 132 (519)
..++....+.+.+.. +.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 445566666666543 4457888887
No 441
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.35 E-value=0.013 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+||||||+.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457888999999999999999987
No 442
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.34 E-value=0.012 Score=53.51 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=27.6
Q ss_pred cCCcccEEeecCccccccC--ccccCCCcCcEEeccCCCCcccCc----chhcCCCCcEEecc
Q 048774 427 KLQRLRIFSLRGYHISELP--DSVGDLRYLRHLNLSRTEIKTLPE----SVSKLYNLHTLLLE 483 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~l~l~~~~i~~lp~----~~~~l~~L~~l~l~ 483 (519)
++++|++|.+++|.+..+- +.+..+++|..|++.+|..+.+-. -+.-+++|++|+-.
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 3466666666666555321 123445555566665555443211 13334555555543
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.093 Score=56.16 Aligned_cols=88 Identities=17% Similarity=0.105 Sum_probs=48.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..++.++|+.|+||||.+..++...........+..++.... ....+.++...+.++.+.. ...+.+++.+.+. .++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~-~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALA-ALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHH-Hhc
Confidence 468889999999999999888873211221234555554432 1233344444444444332 2334555544443 334
Q ss_pred CCeEEEEecCcc
Q 048774 122 GKKFLLVLDDVW 133 (519)
Q Consensus 122 ~~~~LlvlDdv~ 133 (519)
++. ++++|-.-
T Consensus 263 ~~D-~VLIDTAG 273 (767)
T PRK14723 263 DKH-LVLIDTVG 273 (767)
T ss_pred CCC-EEEEeCCC
Confidence 433 66677663
No 444
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.31 E-value=0.14 Score=51.87 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=51.9
Q ss_pred CCCCeEEEEecCCchHHHHH-HHHhCChhhh-----cCCCceEEEEEcCCCCHHHHHHHHHHHhhccC-------CCCCC
Q 048774 41 WPEPMHVFAGFGGLGKTTLA-RLAYNDDRVQ-----NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ-------NVDNL 107 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~~~~~ 107 (519)
+..+...|.|..|+|||+|| ..+.+...+. ++-..++++-+++......-+...+.+-+.-. ..+..
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 45667789999999999997 5556532111 23356788888887544333444444332110 01111
Q ss_pred CHHHH-----HHHHHHHh--cCCeEEEEecCcc
Q 048774 108 NLNKL-----QEELNKQL--SGKKFLLVLDDVW 133 (519)
Q Consensus 108 ~~~~~-----~~~l~~~l--~~~~~LlvlDdv~ 133 (519)
..... .-.+.+.+ .++++|+|+||+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11111 11222333 4789999999993
No 445
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.29 E-value=0.0099 Score=58.64 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=35.7
Q ss_pred hhhhhccccccccceeeeEeecCCCCC-----------CCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 11 DALEAAAHDVFPCRKQAFIWAASPEET-----------MPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 11 ~~l~~~~~~~f~gR~~~~~~l~~~~~~-----------~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+-+....+...+|.++....+...+.. ..+-.++.++++|++|+|||++|+.+..
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344445556667777766655533211 0111246678999999999999999987
No 446
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.27 E-value=0.04 Score=56.06 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELNK 118 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~~ 118 (519)
..++.|.|++|+|||||+.+++. ....+-..++|++.... ..++... ++.++.... ....+.+.+...+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 44777999999999999999887 33333346788886553 3333222 333332111 122344444444322
Q ss_pred HhcCCeEEEEecCcc
Q 048774 119 QLSGKKFLLVLDDVW 133 (519)
Q Consensus 119 ~l~~~~~LlvlDdv~ 133 (519)
.+.-++|+|.+.
T Consensus 155 ---~~~~lVVIDSIq 166 (446)
T PRK11823 155 ---EKPDLVVIDSIQ 166 (446)
T ss_pred ---hCCCEEEEechh
Confidence 355689999984
No 447
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.064 Score=49.56 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF 73 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f 73 (519)
.+++-|+++|.+|.|||-||+++++ .....|
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhc--ccchhh
Confidence 3567888999999999999999999 555555
No 448
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.24 E-value=0.014 Score=55.22 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+.++|++|+|||++++...+
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHhhhc
Confidence 46778999999999999998876
No 449
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.23 E-value=0.11 Score=52.49 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNKL 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~~ 112 (519)
+..+.++|.|.+|+|||+|+.++.+. .... =..++++-+++.. ...++...+...=.... ..+.......
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 35667789999999999999988762 2222 1356677777664 44555555554311110 1111122221
Q ss_pred -----HHHHHHHh---cCCeEEEEecCc
Q 048774 113 -----QEELNKQL---SGKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l---~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++|++
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecch
Confidence 12234444 578999999999
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.22 E-value=0.041 Score=56.03 Aligned_cols=84 Identities=12% Similarity=0.188 Sum_probs=47.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...+++|.|.+|+|||||+.++.. .....-..++|++.... ..++... +..+..... ....+.+.+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 345777999999999999998876 23222235778876653 3332221 222222111 11233444433332
Q ss_pred HHhcCCeEEEEecCcc
Q 048774 118 KQLSGKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv~ 133 (519)
+ .+.-++|+|.+.
T Consensus 168 ~---~~~~~vVIDSIq 180 (454)
T TIGR00416 168 E---ENPQACVIDSIQ 180 (454)
T ss_pred h---cCCcEEEEecch
Confidence 2 355689999984
No 451
>PRK05922 type III secretion system ATPase; Validated
Probab=95.22 E-value=0.14 Score=51.23 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....++|.|+.|+|||||++.+.+.. ..+..+.+.++.. ......+.+......... ..+.......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 45667899999999999999998721 2233444444444 333344444333222111 0111111111
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233333 478999999999
No 452
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.21 E-value=0.022 Score=55.28 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=29.8
Q ss_pred ccccceeeeEeec-CCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAA-SPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~-~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.|.-|...+++-. +.++ ....+..++.|+|.+|+||||+.+++..
T Consensus 386 SFGv~~r~ieryvlr~vN-L~ikpGdvvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 386 SFGVRQRVIERYVLRNLN-LEIKPGDVVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred Hhcchheeeeeeeeecee-eEecCCCeEEEEecCCCCcchHHHHHHH
Confidence 4544555555443 2222 2233557888999999999999999876
No 453
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.18 E-value=0.12 Score=51.92 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
....+.|.|..|+|||||++.+.+.. ..+.++++-+++.. ...++....+..-.... ..+.......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 45777899999999999999988622 22455566666653 44445444443311110 1111112221
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11233333 478999999999
No 454
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.17 E-value=0.027 Score=47.35 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=26.6
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSD 83 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~ 83 (519)
+++.|+|+.|+|||||++.+.+ ... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4677999999999999999998 444 4455555666665
No 455
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.17 E-value=0.0087 Score=65.08 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++++|+|+.+.||||+.+.+.-
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHH
Confidence 457888999999999999988753
No 456
>PRK13947 shikimate kinase; Provisional
Probab=95.17 E-value=0.012 Score=51.46 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 457
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.17 E-value=0.02 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.4
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998873
No 458
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.16 E-value=0.083 Score=52.94 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=49.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhcc------CCCCCCCHHHHH-
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTH------QNVDNLNLNKLQ- 113 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~~~~~- 113 (519)
....++|.|..|+|||||++.+.+.. +.+..++..++.. ..+.+........=... ...+....+...
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 56788899999999999999988722 2344556555554 34444444432210000 011122222221
Q ss_pred ----HHHHHHh--cCCeEEEEecCc
Q 048774 114 ----EELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 114 ----~~l~~~l--~~~~~LlvlDdv 132 (519)
-.+.+++ .++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1233333 478999999999
No 459
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.22 Score=45.08 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=68.1
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH-HH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN-KQ 119 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~ 119 (519)
.+++-+.++|++|.|||-||+++++ ...+.|+.++.. ++.+..+.. . ...++.+. -.
T Consensus 179 aQPKGvlLygppgtGktLlaraVah-------ht~c~firvsgs----elvqk~ige----g-------srmvrelfvma 236 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAH-------HTDCTFIRVSGS----ELVQKYIGE----G-------SRMVRELFVMA 236 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHh-------hcceEEEEechH----HHHHHHhhh----h-------HHHHHHHHHHH
Confidence 4677888999999999999999987 223445555542 222222111 0 11111111 11
Q ss_pred hcCCeEEEEecCccccC--------------ccchhhhccccCCC--CCCcEEEEEecchhHHHh--c---CCCCeeecC
Q 048774 120 LSGKKFLLVLDDVWNRN--------------YDDWVDFSRPLGAS--AQGSKIIVSTRNHEVAKI--M---GTLPAYQLK 178 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~~--~---~~~~~~~l~ 178 (519)
-.+-+.+|.+|.+++.- +....++...+..+ ..+-++|+.|..-++... . ..++.++..
T Consensus 237 rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 237 REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCC
Confidence 13457788888885310 01111222222222 346678877765444321 1 123456666
Q ss_pred CCChhhHHHHHHHhh
Q 048774 179 KLSYNDCLAIFAQHS 193 (519)
Q Consensus 179 ~L~~~ea~~L~~~~~ 193 (519)
+-+++.-.+++.-+.
T Consensus 317 ~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 317 PPNEEARLDILKIHS 331 (404)
T ss_pred CCCHHHHHHHHHHhh
Confidence 666666566665443
No 460
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.15 E-value=0.055 Score=44.92 Aligned_cols=36 Identities=19% Similarity=-0.087 Sum_probs=24.0
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEE
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTC 80 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 80 (519)
.++|.|+.|+|||+.+..+............++++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 457999999999999977766322222334555554
No 461
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.15 E-value=0.11 Score=50.22 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=27.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
...++.++|++|+||||++..++. .....-..+..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~--~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH--KYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCeEEEEecC
Confidence 456888999999999999999887 333332234444443
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.14 E-value=0.021 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++.|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 345777999999999999999987
No 463
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.12 E-value=0.26 Score=57.40 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.++-+.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4667789999999999999999984
No 464
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.10 E-value=0.015 Score=50.50 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.5
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|+|.+|+|||||++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 57999999999999999887
No 465
>PRK14527 adenylate kinase; Provisional
Probab=95.10 E-value=0.021 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++|.|++|+||||+|+.+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457888999999999999999876
No 466
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.08 E-value=0.083 Score=52.79 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhcc------CCCCCCCHHHH--
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTH------QNVDNLNLNKL-- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~~~~-- 112 (519)
....++|.|..|+|||||+..+.+.. ..+..+...++.. ....++...+...-... ...+.......
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 45678899999999999999888622 1234445555554 33444444443321100 01111121111
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 11223333 478999999999
No 467
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.08 E-value=0.099 Score=50.41 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTI 94 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 94 (519)
..+.+.|.|..|+|||+|+.++.+. .+-+.++++-+++.. ...+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 4567779999999999999999873 233567888887764 334444443
No 468
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.07 E-value=0.12 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+...++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457788999999999999999876
No 469
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.06 E-value=0.23 Score=49.79 Aligned_cols=23 Identities=39% Similarity=0.403 Sum_probs=20.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+.|.|++|+||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45677999999999999998865
No 470
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.05 E-value=0.099 Score=52.58 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccC------CCCCCCHHHH--
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ------NVDNLNLNKL-- 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~-- 112 (519)
.....++|.|..|+|||||++.+..... . -.++++....+.....++.+.+...-.... ..+.......
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~--~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ--C-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3567888999999999999999986321 1 123444443444455555555543311100 1111112211
Q ss_pred ---HHHHHHHh--cCCeEEEEecCc
Q 048774 113 ---QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ---~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233333 478999999999
No 471
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.05 E-value=0.013 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.0
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999887
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.05 E-value=0.077 Score=56.90 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+...++|+|.+|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999998865
No 473
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.04 E-value=0.18 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|.|+.|+|||||.+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999876
No 474
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.00 E-value=0.017 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|.+|+||||+|+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35777999999999999999987
No 475
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.00 E-value=0.019 Score=53.38 Aligned_cols=53 Identities=19% Similarity=0.037 Sum_probs=35.2
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKT 93 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 93 (519)
+...+++|+|.||+|||||..++.....-+++=-.++-|+-+++++--.++-+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 35668889999999999999988873332333234555666666654444433
No 476
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.99 E-value=0.036 Score=53.27 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 91 (519)
.+++++.|.||+||||+|.+.+- ........++-++...-.+..+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 36788999999999999988665 444444556666666555554444
No 477
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.98 E-value=0.11 Score=52.13 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhcc-C-----CCCCCCHHHH-
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTH-Q-----NVDNLNLNKL- 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-~-----~~~~~~~~~~- 112 (519)
+..+.+.|.|.+|+|||+|+.++.+... +.+-+.++++-++... ...++.+.+...=... . ..+.......
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 3556778999999999999999877422 2233677888887664 3445555554321110 0 1111122221
Q ss_pred ----HHHHHHHh---cCCeEEEEecCc
Q 048774 113 ----QEELNKQL---SGKKFLLVLDDV 132 (519)
Q Consensus 113 ----~~~l~~~l---~~~~~LlvlDdv 132 (519)
.-.+.+++ +++++|+++||+
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 22234444 358999999999
No 478
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.97 E-value=0.025 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=22.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.+++++.|.+|+|||||++.+..+
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 488999999999999999999884
No 479
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.96 E-value=0.021 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|.|++|+||+||+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~ 24 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQ 24 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 36788999999999999999987
No 480
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.96 E-value=0.11 Score=52.42 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh------hccCCCCCCCHHHH---
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI------VTHQNVDNLNLNKL--- 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l------~~~~~~~~~~~~~~--- 112 (519)
....++|.|..|+|||||++.+... .. .-.+++++...+..+..++....+..- ..-...+.......
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~--~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN--TS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc--cC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 5678889999999999999988862 21 122444544444444555443322211 10111111111111
Q ss_pred --HHHHHHHh--cCCeEEEEecCc
Q 048774 113 --QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 --~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dsl 257 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSV 257 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCh
Confidence 12233333 478999999998
No 481
>PRK06761 hypothetical protein; Provisional
Probab=94.95 E-value=0.034 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.6
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|.|++|+||||+++.+++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999998
No 482
>PRK14530 adenylate kinase; Provisional
Probab=94.95 E-value=0.018 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=19.7
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|.|++|+||||+|+.+++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 483
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.94 E-value=0.016 Score=53.11 Aligned_cols=48 Identities=19% Similarity=0.030 Sum_probs=28.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCCCHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~ 91 (519)
...+++|+|+||+|||||..++.. .+...= -.++-|+-+++++--+++
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~--~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR--ELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH--HHHHTT--EEEEEE-GGGGCC---SS
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH--HHhhcCCceEEEEECCCCCCCCCccc
Confidence 456777999999999999999887 334332 244455555555444433
No 484
>PRK14529 adenylate kinase; Provisional
Probab=94.94 E-value=0.062 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.307 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999998876
No 485
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.94 E-value=0.052 Score=48.67 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.4
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999987
No 486
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.93 E-value=0.025 Score=50.10 Aligned_cols=37 Identities=22% Similarity=0.052 Sum_probs=26.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
...+++|.|++|+|||||.+.+-.=+. .-.+.+|++.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECC
Confidence 457889999999999999998865221 1235666654
No 487
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.92 E-value=0.018 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999986
No 488
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.92 E-value=0.052 Score=48.59 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.2
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++|.|+.|+||||+++.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999987
No 489
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.91 E-value=0.023 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
...++++.|.-|+||||+++.+++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999873
No 490
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.90 E-value=0.027 Score=39.39 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.9
Q ss_pred CeEEEEecCCchHHHHHHHHh
Q 048774 44 PMHVFAGFGGLGKTTLARLAY 64 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~ 64 (519)
.+.+|+|+.|+|||||..++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999997654
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.89 E-value=0.12 Score=48.03 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=41.7
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCC--HHHHHHHHHHHhh---ccC--CCCCCCHHHHHHHHH
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFD--VIRLTKTILTSIV---THQ--NVDNLNLNKLQEELN 117 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~il~~l~---~~~--~~~~~~~~~~~~~l~ 117 (519)
+++|+|.+|+||||+|+++.. .++..-..+..++...-.. ....-..+..... .-. .+++.+.+.+...++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 467999999999999998876 3332212234444333222 2222222222111 111 135667777777777
Q ss_pred HHhcCC
Q 048774 118 KQLSGK 123 (519)
Q Consensus 118 ~~l~~~ 123 (519)
....++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 666554
No 492
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.88 E-value=0.031 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=16.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+|+|++|+|||+++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 577999999999987766665
No 493
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.88 E-value=0.054 Score=53.54 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.1
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
.+++|.|.+|+|||.||-.++.+..........++++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 57789999999999999999883211444556667666654
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.87 E-value=0.12 Score=52.63 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=45.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+++++|+.|+||||++..++.....+..-..+..++.... ....+-++...+.++.+.. ...+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hhcc
Confidence 468889999999999999998863222221223555554432 2223333334444443322 112222222222 2334
Q ss_pred CCeEEEEecCcc
Q 048774 122 GKKFLLVLDDVW 133 (519)
Q Consensus 122 ~~~~LlvlDdv~ 133 (519)
++ -.+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 477788763
No 495
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.02 Score=48.30 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|+|.+|+||||+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 46788999999999999988876
No 496
>PRK13948 shikimate kinase; Provisional
Probab=94.87 E-value=0.021 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....+++.|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999999986
No 497
>PLN02796 D-glycerate 3-kinase
Probab=94.86 E-value=0.14 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=19.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+-+++|.|+.|+|||||++.+..
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 34556999999999999999887
No 498
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.86 E-value=0.11 Score=51.04 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC-CCCHHHHHHHHHHHhhccC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD-DFDVIRLTKTILTSIVTHQ 102 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~ 102 (519)
.+.++.++|.-|+||||-|..+++ .++.+=..+.-|.+.. .+...+.++.+..+...+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~--~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK--YLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH--HHHHcCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 345666999999999999988887 3333222333333332 2344555666666666554
No 499
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.85 E-value=0.17 Score=50.91 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=53.2
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC------CCCCCCHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ------NVDNLNLNKL 112 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~~ 112 (519)
+..+.++|.|.+|+|||+|+.++.+ ... ++-..++++-+++.. ...+++..+...=.... ..+.......
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~--~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELIN--NIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHH--HHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3566778999999999999999876 222 222366777777664 44555555543211100 1112222221
Q ss_pred -----HHHHHHHh---cCCeEEEEecCc
Q 048774 113 -----QEELNKQL---SGKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l---~~~~~LlvlDdv 132 (519)
.-.+.+++ +++++|+++||+
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 12234444 468999999999
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.84 E-value=0.11 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=24.1
Q ss_pred EEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 46 HVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
+++.|.||+|||+++..+.. .....-..+.-++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~--~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR--YLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECC
Confidence 56999999999999998877 443332334444433
Done!