Query 048774
Match_columns 519
No_of_seqs 237 out of 2833
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 22:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.5E-44 2.2E-48 371.9 14.7 316 22-357 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.6E-36 5.4E-41 320.7 13.1 285 21-349 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-35 3.8E-40 341.1 20.2 309 19-356 124-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.2E-34 4.2E-39 306.2 19.3 306 18-354 123-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 2.6E-17 9E-22 161.8 14.6 293 17-350 10-349 (350)
6 2fna_A Conserved hypothetical 99.7 2.4E-16 8.3E-21 155.3 17.8 293 17-349 11-356 (357)
7 1w5s_A Origin recognition comp 99.7 2.1E-17 7.3E-22 166.3 10.0 320 9-345 11-387 (412)
8 2v1u_A Cell division control p 99.6 4.9E-14 1.7E-18 140.4 16.4 301 9-332 8-351 (387)
9 2qby_A CDC6 homolog 1, cell di 99.5 4.7E-14 1.6E-18 140.4 13.5 314 8-342 8-361 (386)
10 1fnn_A CDC6P, cell division co 99.5 1.8E-13 6.3E-18 136.3 17.8 310 8-333 5-352 (389)
11 2qby_B CDC6 homolog 3, cell di 99.5 1.3E-13 4.5E-18 137.2 16.2 289 18-332 19-339 (384)
12 4fcg_A Uncharacterized protein 99.3 1.8E-12 6E-17 125.9 9.3 115 398-519 182-297 (328)
13 1njg_A DNA polymerase III subu 99.3 3.6E-12 1.2E-16 118.0 10.8 197 19-229 23-230 (250)
14 4fcg_A Uncharacterized protein 99.3 2.7E-12 9.3E-17 124.6 8.6 88 422-509 222-311 (328)
15 2chg_A Replication factor C sm 99.3 1.3E-11 4.4E-16 112.6 9.6 182 19-225 17-202 (226)
16 2ell_A Acidic leucine-rich nuc 99.2 2.6E-11 9E-16 105.3 7.5 136 373-518 23-165 (168)
17 4ezg_A Putative uncharacterize 99.2 8.1E-11 2.8E-15 105.2 10.5 109 393-510 82-192 (197)
18 3e6j_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 107.5 9.9 131 372-511 38-171 (229)
19 4b8c_D Glucose-repressible alc 99.2 9.1E-12 3.1E-16 133.6 3.6 97 421-517 262-359 (727)
20 1ogq_A PGIP-2, polygalacturona 99.1 4.2E-11 1.4E-15 115.4 7.4 137 374-516 50-191 (313)
21 2v70_A SLIT-2, SLIT homolog 2 99.1 1.6E-10 5.5E-15 105.1 10.5 132 373-511 31-165 (220)
22 2je0_A Acidic leucine-rich nuc 99.1 6.2E-11 2.1E-15 100.7 7.1 109 399-516 17-129 (149)
23 4ezg_A Putative uncharacterize 99.1 1E-10 3.5E-15 104.5 8.8 129 375-516 45-175 (197)
24 3m19_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 105.5 11.9 136 373-517 34-172 (251)
25 1a9n_A U2A', U2A'; complex (nu 99.1 9.9E-11 3.4E-15 102.5 7.0 125 374-510 19-151 (176)
26 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.2E-15 101.1 7.5 112 397-517 22-137 (168)
27 3e6j_A Variable lymphocyte rec 99.1 3.7E-10 1.3E-14 103.4 11.0 111 399-517 40-152 (229)
28 1sxj_B Activator 1 37 kDa subu 99.1 1.4E-10 4.8E-15 112.2 8.5 185 19-228 21-211 (323)
29 2v9t_B SLIT homolog 2 protein 99.1 3.1E-10 1E-14 103.3 9.9 130 373-510 31-163 (220)
30 2v9t_B SLIT homolog 2 protein 99.1 2.6E-10 9E-15 103.7 9.3 112 399-517 32-145 (220)
31 1p9a_G Platelet glycoprotein I 99.1 5.7E-10 1.9E-14 106.1 11.0 97 420-518 91-190 (290)
32 2o6s_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 100.2 10.8 135 373-516 27-165 (208)
33 1p9a_G Platelet glycoprotein I 99.0 4E-10 1.4E-14 107.1 8.9 88 427-516 75-164 (290)
34 3rfs_A Internalin B, repeat mo 99.0 7.5E-10 2.6E-14 104.2 10.7 83 427-510 107-192 (272)
35 1ozn_A Reticulon 4 receptor; N 99.0 6.2E-10 2.1E-14 105.6 10.1 83 427-510 151-236 (285)
36 3rgz_A Protein brassinosteroid 99.0 2.4E-10 8.1E-15 124.0 8.1 97 422-518 625-723 (768)
37 1dce_A Protein (RAB geranylger 99.0 2.8E-10 9.7E-15 118.3 7.9 91 424-517 458-550 (567)
38 3rfs_A Internalin B, repeat mo 99.0 8.2E-10 2.8E-14 104.0 10.4 117 391-517 55-174 (272)
39 2xot_A Amphoterin-induced prot 99.0 6E-10 2.1E-14 109.5 9.8 136 372-516 37-179 (361)
40 1ogq_A PGIP-2, polygalacturona 99.0 3E-10 1E-14 109.4 7.2 88 422-510 142-232 (313)
41 2v70_A SLIT-2, SLIT homolog 2 99.0 6.4E-10 2.2E-14 101.1 8.7 111 400-517 33-147 (220)
42 1a9n_A U2A', U2A'; complex (nu 99.0 4.6E-10 1.6E-14 98.2 7.3 114 393-517 13-130 (176)
43 2o6q_A Variable lymphocyte rec 99.0 1.4E-09 4.6E-14 102.4 10.9 88 427-516 107-197 (270)
44 4eco_A Uncharacterized protein 99.0 8.2E-10 2.8E-14 117.0 10.4 96 421-517 198-322 (636)
45 2r9u_A Variable lymphocyte rec 99.0 4.6E-10 1.6E-14 97.9 7.0 93 420-516 26-121 (174)
46 2je0_A Acidic leucine-rich nuc 99.0 2.7E-10 9.1E-15 96.8 5.1 126 374-508 17-149 (149)
47 4b8c_D Glucose-repressible alc 99.0 2.8E-10 9.6E-15 122.1 6.2 115 394-516 219-333 (727)
48 3m19_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 101.6 9.5 130 374-511 59-191 (251)
49 2z62_A TOLL-like receptor 4, v 99.0 9.2E-10 3.1E-14 103.9 8.9 134 373-515 27-164 (276)
50 3zyi_A Leucine-rich repeat-con 99.0 1.1E-09 3.9E-14 111.1 10.1 138 372-517 73-213 (452)
51 2o6q_A Variable lymphocyte rec 99.0 1.7E-09 5.8E-14 101.7 10.6 136 372-517 35-174 (270)
52 2z66_A Variable lymphocyte rec 99.0 8.8E-10 3E-14 105.7 8.5 110 394-510 121-234 (306)
53 1w8a_A SLIT protein; signaling 99.0 8.9E-10 3.1E-14 97.9 7.8 108 400-513 30-140 (192)
54 3vq2_A TLR4, TOLL-like recepto 99.0 1.1E-09 3.7E-14 115.7 9.9 137 372-516 30-169 (606)
55 3zyj_A Leucine-rich repeat-con 99.0 1.6E-09 5.3E-14 109.7 10.6 138 372-517 62-202 (440)
56 2o6s_A Variable lymphocyte rec 99.0 1.9E-09 6.4E-14 97.1 10.0 111 398-517 27-141 (208)
57 4ecn_A Leucine-rich repeat pro 99.0 1E-09 3.4E-14 119.2 9.4 136 374-518 491-637 (876)
58 1hqc_A RUVB; extended AAA-ATPa 99.0 5.3E-10 1.8E-14 108.2 6.2 180 19-230 12-214 (324)
59 1ozn_A Reticulon 4 receptor; N 99.0 1.6E-09 5.5E-14 102.8 9.4 115 394-515 75-192 (285)
60 1h6u_A Internalin H; cell adhe 99.0 2.2E-09 7.4E-14 103.0 10.4 111 393-516 101-211 (308)
61 1h6t_A Internalin B; cell adhe 99.0 2.6E-09 8.9E-14 101.6 10.9 82 425-510 108-189 (291)
62 3rgz_A Protein brassinosteroid 99.0 8.8E-10 3E-14 119.5 8.6 119 394-518 437-557 (768)
63 4eco_A Uncharacterized protein 99.0 1.9E-09 6.6E-14 114.2 10.9 115 397-519 455-585 (636)
64 4g8a_A TOLL-like receptor 4; l 98.9 1.2E-09 4.1E-14 115.8 9.1 137 372-516 50-189 (635)
65 4ecn_A Leucine-rich repeat pro 98.9 2.4E-09 8.3E-14 116.2 11.6 115 397-519 695-825 (876)
66 2wfh_A SLIT homolog 2 protein 98.9 1.8E-09 6.2E-14 95.9 8.6 104 399-510 31-137 (193)
67 3vq2_A TLR4, TOLL-like recepto 98.9 8.2E-10 2.8E-14 116.6 7.4 118 394-518 419-539 (606)
68 2wfh_A SLIT homolog 2 protein 98.9 2E-09 6.8E-14 95.6 8.7 104 374-485 31-136 (193)
69 2z80_A TOLL-like receptor 2, v 98.9 8.9E-10 3E-14 108.0 7.0 130 374-510 52-185 (353)
70 3g39_A Variable lymphocyte rec 98.9 1.6E-09 5.6E-14 94.1 7.0 81 429-510 30-113 (170)
71 3o6n_A APL1; leucine-rich repe 98.9 3.6E-09 1.2E-13 105.2 10.2 134 374-515 45-180 (390)
72 2id5_A Lingo-1, leucine rich r 98.9 3E-09 1E-13 108.7 9.9 137 372-516 30-168 (477)
73 2xwt_C Thyrotropin receptor; s 98.9 2.2E-09 7.6E-14 98.9 7.8 88 427-516 103-196 (239)
74 1h6u_A Internalin H; cell adhe 98.9 3.1E-09 1.1E-13 101.9 9.1 127 374-516 107-233 (308)
75 2z63_A TOLL-like receptor 4, v 98.9 2.8E-09 9.6E-14 111.5 9.5 136 372-515 26-164 (570)
76 2o6r_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 92.8 8.0 108 398-513 27-138 (177)
77 3o53_A Protein LRIM1, AGAP0063 98.9 5E-09 1.7E-13 101.0 9.9 128 374-510 120-248 (317)
78 1wwl_A Monocyte differentiatio 98.9 1.8E-09 6.3E-14 103.8 6.9 132 373-514 94-242 (312)
79 1xku_A Decorin; proteoglycan, 98.9 8.2E-09 2.8E-13 100.1 11.5 136 373-518 51-189 (330)
80 1xeu_A Internalin C; cellular 98.9 3.4E-09 1.2E-13 99.1 8.5 125 374-515 41-165 (263)
81 3oja_B Anopheles plasmodium-re 98.9 3.7E-09 1.3E-13 111.2 9.6 115 395-516 71-187 (597)
82 1h6t_A Internalin B; cell adhe 98.9 6.7E-09 2.3E-13 98.7 10.5 112 392-516 61-172 (291)
83 1ds9_A Outer arm dynein; leuci 98.9 1E-10 3.5E-15 104.6 -2.1 107 394-510 43-151 (198)
84 1xku_A Decorin; proteoglycan, 98.9 1.4E-08 4.8E-13 98.4 12.9 87 429-517 192-280 (330)
85 2chq_A Replication factor C sm 98.9 9.5E-09 3.3E-13 99.0 11.6 178 19-224 17-201 (319)
86 3oja_A Leucine-rich immune mol 98.9 5E-09 1.7E-13 107.2 10.1 129 374-511 120-249 (487)
87 2z62_A TOLL-like receptor 4, v 98.9 5E-09 1.7E-13 98.8 9.0 116 395-517 72-217 (276)
88 2z81_A CD282 antigen, TOLL-lik 98.9 2.1E-09 7.3E-14 111.9 6.8 139 373-518 25-167 (549)
89 3zyj_A Leucine-rich repeat-con 98.9 6.5E-09 2.2E-13 105.1 10.1 116 394-517 155-272 (440)
90 1dce_A Protein (RAB geranylger 98.9 4.3E-09 1.5E-13 109.4 8.8 119 376-506 443-567 (567)
91 1m9s_A Internalin B; cell inva 98.8 5.8E-09 2E-13 109.1 9.8 106 393-510 103-208 (605)
92 1ziw_A TOLL-like receptor 3; i 98.8 5.3E-09 1.8E-13 112.0 9.7 131 373-510 24-156 (680)
93 2ft3_A Biglycan; proteoglycan, 98.8 1.2E-08 4E-13 99.0 11.1 134 373-517 53-189 (332)
94 2z66_A Variable lymphocyte rec 98.8 2.7E-09 9.3E-14 102.3 6.4 94 421-515 93-190 (306)
95 1iqp_A RFCS; clamp loader, ext 98.8 2.4E-09 8.2E-14 103.6 6.1 182 19-225 25-210 (327)
96 1w8a_A SLIT protein; signaling 98.8 4.1E-09 1.4E-13 93.5 7.1 86 430-517 30-120 (192)
97 1xeu_A Internalin C; cellular 98.8 1.1E-08 3.9E-13 95.6 10.4 127 373-516 62-188 (263)
98 3zyi_A Leucine-rich repeat-con 98.8 8.9E-09 3E-13 104.5 10.1 134 375-517 148-283 (452)
99 3o6n_A APL1; leucine-rich repe 98.8 8.4E-09 2.9E-13 102.5 9.7 108 394-510 243-350 (390)
100 2xwt_C Thyrotropin receptor; s 98.8 5.2E-09 1.8E-13 96.4 7.6 135 374-518 80-223 (239)
101 1jr3_A DNA polymerase III subu 98.8 5.7E-09 2E-13 103.0 8.0 196 19-227 16-221 (373)
102 3te6_A Regulatory protein SIR3 98.8 3.8E-09 1.3E-13 100.2 6.2 171 19-194 20-212 (318)
103 2xot_A Amphoterin-induced prot 98.8 7.4E-09 2.5E-13 101.7 8.2 112 399-517 39-153 (361)
104 3oja_A Leucine-rich immune mol 98.8 5.3E-09 1.8E-13 107.0 7.4 132 374-518 99-232 (487)
105 3v47_A TOLL-like receptor 5B a 98.8 1.1E-08 3.6E-13 103.9 9.6 135 374-516 275-412 (455)
106 3j0a_A TOLL-like receptor 5; m 98.8 8.6E-09 2.9E-13 113.0 9.4 133 372-511 22-160 (844)
107 3oja_B Anopheles plasmodium-re 98.8 1E-08 3.5E-13 107.9 9.6 124 375-510 233-356 (597)
108 3v47_A TOLL-like receptor 5B a 98.8 1.2E-08 4.3E-13 103.4 9.9 113 398-517 274-388 (455)
109 4g8a_A TOLL-like receptor 4; l 98.8 7.5E-09 2.6E-13 109.6 8.6 109 399-515 52-163 (635)
110 2z7x_B TOLL-like receptor 1, v 98.8 2.3E-08 7.7E-13 103.4 11.7 134 373-518 20-159 (520)
111 2z7x_B TOLL-like receptor 1, v 98.8 1.6E-08 5.5E-13 104.5 10.5 115 393-517 342-461 (520)
112 2o6r_A Variable lymphocyte rec 98.8 1.7E-08 6E-13 88.1 8.9 89 428-518 27-118 (177)
113 1m9s_A Internalin B; cell inva 98.8 9.8E-09 3.4E-13 107.4 8.5 127 374-516 65-191 (605)
114 4glp_A Monocyte differentiatio 98.8 3.6E-09 1.2E-13 101.7 4.6 86 427-516 195-288 (310)
115 3o53_A Protein LRIM1, AGAP0063 98.8 9.8E-09 3.4E-13 98.9 7.3 113 397-518 118-232 (317)
116 2z80_A TOLL-like receptor 2, v 98.8 9E-09 3.1E-13 100.8 7.1 111 399-516 52-166 (353)
117 2z63_A TOLL-like receptor 4, v 98.7 1.1E-08 3.8E-13 107.0 7.7 117 394-517 416-536 (570)
118 1ds9_A Outer arm dynein; leuci 98.7 7.3E-10 2.5E-14 99.0 -1.2 121 374-505 48-180 (198)
119 4fmz_A Internalin; leucine ric 98.7 7.2E-08 2.5E-12 94.0 12.6 110 395-515 217-326 (347)
120 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3.3E-08 1.1E-12 103.3 10.3 134 374-518 353-491 (562)
121 4glp_A Monocyte differentiatio 98.7 2.8E-08 9.6E-13 95.4 8.8 138 374-518 117-269 (310)
122 3t6q_A CD180 antigen; protein- 98.7 2E-08 7E-13 105.8 8.4 106 373-485 32-139 (606)
123 2z81_A CD282 antigen, TOLL-lik 98.7 1.5E-08 5.3E-13 105.4 6.9 112 399-517 26-141 (549)
124 1wwl_A Monocyte differentiatio 98.7 4.7E-08 1.6E-12 93.8 9.7 138 373-519 120-272 (312)
125 4fmz_A Internalin; leucine ric 98.7 6.5E-08 2.2E-12 94.3 10.7 105 395-510 84-188 (347)
126 2id5_A Lingo-1, leucine rich r 98.7 4.5E-08 1.5E-12 100.0 9.7 85 425-510 244-331 (477)
127 2ft3_A Biglycan; proteoglycan, 98.7 4.2E-08 1.4E-12 95.1 8.9 87 429-517 193-281 (332)
128 3g39_A Variable lymphocyte rec 98.7 4.2E-08 1.4E-12 85.0 7.9 85 430-518 10-96 (170)
129 2r9u_A Variable lymphocyte rec 98.7 4E-08 1.4E-12 85.5 7.7 84 431-518 14-99 (174)
130 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 4.7E-08 1.6E-12 102.1 9.6 127 373-511 51-181 (562)
131 3t6q_A CD180 antigen; protein- 98.6 6.5E-08 2.2E-12 102.0 10.2 114 395-516 421-539 (606)
132 3bz5_A Internalin-J, INLJ; leu 98.6 4.4E-08 1.5E-12 99.2 8.4 124 374-516 42-165 (457)
133 3bz5_A Internalin-J, INLJ; leu 98.6 8.9E-08 3E-12 97.0 9.9 124 373-516 63-186 (457)
134 3cvr_A Invasion plasmid antige 98.6 1.4E-08 4.8E-13 105.1 3.9 120 375-516 121-247 (571)
135 3cvr_A Invasion plasmid antige 98.6 1E-07 3.5E-12 98.7 10.3 81 427-518 138-225 (571)
136 2ast_B S-phase kinase-associat 98.6 2E-08 6.9E-13 97.5 4.7 86 425-510 164-258 (336)
137 1o6v_A Internalin A; bacterial 98.6 2.8E-08 9.6E-13 101.2 5.8 120 374-508 46-165 (466)
138 1sxj_D Activator 1 41 kDa subu 98.6 1.5E-07 5.2E-12 91.9 10.9 193 19-224 37-232 (353)
139 1jbk_A CLPB protein; beta barr 98.6 2E-08 6.9E-13 88.8 3.9 45 18-65 21-65 (195)
140 2ifg_A High affinity nerve gro 98.6 7E-08 2.4E-12 94.2 8.0 89 420-510 23-114 (347)
141 3j0a_A TOLL-like receptor 5; m 98.6 7.1E-08 2.4E-12 105.7 8.8 136 374-515 48-190 (844)
142 1ziw_A TOLL-like receptor 3; i 98.6 7.7E-08 2.6E-12 102.9 8.7 111 399-516 25-138 (680)
143 3bos_A Putative DNA replicatio 98.6 4.2E-08 1.4E-12 90.3 5.6 173 19-226 28-216 (242)
144 2ca6_A RAN GTPase-activating p 98.6 9.1E-08 3.1E-12 94.8 8.0 132 374-511 159-315 (386)
145 1o6v_A Internalin A; bacterial 98.5 3.3E-07 1.1E-11 93.2 11.6 82 425-510 283-364 (466)
146 2ifg_A High affinity nerve gro 98.5 1.2E-07 4E-12 92.6 7.7 83 433-518 12-98 (347)
147 2z4s_A Chromosomal replication 98.5 5E-07 1.7E-11 90.7 11.7 161 43-225 130-304 (440)
148 4ay9_X Follicle-stimulating ho 98.5 1.9E-07 6.6E-12 91.1 8.2 65 453-518 155-220 (350)
149 3uk6_A RUVB-like 2; hexameric 98.5 1.7E-07 5.7E-12 92.3 6.7 195 19-225 44-301 (368)
150 1sxj_E Activator 1 40 kDa subu 98.5 4.4E-07 1.5E-11 88.7 9.6 192 19-225 14-235 (354)
151 2ast_B S-phase kinase-associat 98.4 1.3E-07 4.5E-12 91.7 5.4 133 374-512 93-235 (336)
152 3g06_A SSPH2 (leucine-rich rep 98.4 2.2E-07 7.5E-12 97.4 7.3 78 428-512 220-297 (622)
153 1jl5_A Outer protein YOPM; leu 98.4 4.3E-07 1.5E-11 91.9 9.2 123 374-516 131-253 (454)
154 2ca6_A RAN GTPase-activating p 98.4 3.1E-07 1.1E-11 90.9 7.5 109 399-514 159-288 (386)
155 1jl5_A Outer protein YOPM; leu 98.4 1.2E-07 4.2E-12 95.9 4.5 80 429-517 91-170 (454)
156 1a5t_A Delta prime, HOLB; zinc 98.4 5.3E-06 1.8E-10 80.2 15.6 96 122-226 107-204 (334)
157 3pfi_A Holliday junction ATP-d 98.4 4.8E-07 1.6E-11 87.8 8.1 175 19-226 29-226 (338)
158 3g06_A SSPH2 (leucine-rich rep 98.4 9E-07 3.1E-11 92.7 10.6 39 428-469 120-158 (622)
159 1sxj_A Activator 1 95 kDa subu 98.4 3.4E-07 1.2E-11 94.1 6.4 194 19-227 39-253 (516)
160 1l8q_A Chromosomal replication 98.3 4.9E-06 1.7E-10 80.1 13.5 156 42-222 36-203 (324)
161 2p65_A Hypothetical protein PF 98.3 1.9E-07 6.3E-12 82.0 2.5 45 18-65 21-65 (187)
162 3pvs_A Replication-associated 98.3 1.3E-06 4.6E-11 87.5 8.9 176 19-224 26-212 (447)
163 3h4m_A Proteasome-activating n 98.3 6.1E-07 2.1E-11 84.8 5.6 180 19-224 17-228 (285)
164 1d2n_A N-ethylmaleimide-sensit 98.2 1.5E-06 5.3E-11 81.4 7.2 183 9-220 23-230 (272)
165 3u61_B DNA polymerase accessor 98.2 7.1E-07 2.4E-11 86.1 4.7 173 19-222 26-211 (324)
166 1sxj_C Activator 1 40 kDa subu 98.2 4E-06 1.4E-10 81.3 10.0 177 21-222 27-207 (340)
167 3eie_A Vacuolar protein sortin 98.2 6.9E-06 2.4E-10 78.9 11.0 181 19-227 18-228 (322)
168 3n70_A Transport activator; si 98.2 3.4E-07 1.2E-11 76.9 0.8 114 20-162 2-115 (145)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.2 1.3E-05 4.3E-10 74.6 11.5 156 42-221 38-215 (262)
170 2qp9_X Vacuolar protein sortin 98.1 2E-05 6.8E-10 76.7 13.0 182 19-227 51-261 (355)
171 3goz_A Leucine-rich repeat-con 98.1 3.2E-06 1.1E-10 82.8 7.3 109 399-514 80-210 (362)
172 1xwi_A SKD1 protein; VPS4B, AA 98.1 7E-05 2.4E-09 71.7 16.1 160 42-227 44-223 (322)
173 3d8b_A Fidgetin-like protein 1 98.1 1.3E-05 4.4E-10 78.2 10.8 183 19-227 84-295 (357)
174 4ay9_X Follicle-stimulating ho 98.1 4.4E-06 1.5E-10 81.4 7.5 139 372-518 28-196 (350)
175 3syl_A Protein CBBX; photosynt 98.1 2.2E-05 7.5E-10 74.9 12.1 156 19-195 31-219 (309)
176 3vfd_A Spastin; ATPase, microt 98.0 5.1E-05 1.7E-09 74.9 13.2 184 19-227 115-326 (389)
177 3goz_A Leucine-rich repeat-con 98.0 5.3E-06 1.8E-10 81.3 6.0 114 392-513 14-151 (362)
178 1z7x_W Ribonuclease inhibitor; 98.0 7.7E-06 2.6E-10 82.8 7.4 110 395-510 52-181 (461)
179 1z7x_W Ribonuclease inhibitor; 98.0 8.2E-06 2.8E-10 82.6 7.6 133 374-514 56-213 (461)
180 3ec2_A DNA replication protein 98.0 1.2E-06 4.2E-11 76.5 1.1 103 42-162 37-142 (180)
181 1qvr_A CLPB protein; coiled co 98.0 2.5E-06 8.5E-11 93.2 3.6 152 19-192 170-344 (854)
182 3pxg_A Negative regulator of g 98.0 6.6E-06 2.3E-10 83.2 6.0 145 19-193 180-338 (468)
183 3b9p_A CG5977-PA, isoform A; A 98.0 0.0002 6.9E-09 67.7 15.8 181 19-227 21-233 (297)
184 2gno_A DNA polymerase III, gam 97.9 9.1E-06 3.1E-10 77.1 6.0 132 43-193 18-152 (305)
185 3un9_A NLR family member X1; l 97.9 8.9E-06 3.1E-10 79.7 6.1 110 397-513 124-252 (372)
186 3cf0_A Transitional endoplasmi 97.9 0.0001 3.6E-09 69.9 12.6 155 42-222 48-223 (301)
187 2zan_A Vacuolar protein sortin 97.9 0.00023 7.7E-09 71.4 15.4 185 19-227 134-345 (444)
188 1ofh_A ATP-dependent HSL prote 97.9 1.1E-05 3.9E-10 76.9 5.4 57 9-65 5-72 (310)
189 1in4_A RUVB, holliday junction 97.9 3.8E-05 1.3E-09 74.1 9.0 174 19-225 25-221 (334)
190 4fcw_A Chaperone protein CLPB; 97.8 6.5E-06 2.2E-10 78.7 3.2 71 12-84 10-86 (311)
191 2kjq_A DNAA-related protein; s 97.8 4.8E-06 1.6E-10 70.0 1.6 39 42-82 35-73 (149)
192 2w58_A DNAI, primosome compone 97.8 1.9E-05 6.5E-10 70.2 5.2 36 44-81 55-90 (202)
193 3e4g_A ATP synthase subunit S, 97.8 2.6E-05 8.9E-10 66.8 5.7 84 430-513 62-153 (176)
194 2bjv_A PSP operon transcriptio 97.8 9.1E-06 3.1E-10 75.7 3.1 46 19-65 6-51 (265)
195 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 71.3 5.5 79 427-506 168-258 (267)
196 1r6b_X CLPA protein; AAA+, N-t 97.7 9E-05 3.1E-09 79.9 9.2 154 19-193 186-362 (758)
197 3un9_A NLR family member X1; l 97.7 4.1E-05 1.4E-09 75.0 5.9 107 399-513 101-224 (372)
198 3co5_A Putative two-component 97.7 2.9E-06 1E-10 70.9 -2.1 45 20-65 5-49 (143)
199 3pxi_A Negative regulator of g 97.6 3.9E-05 1.3E-09 82.7 6.0 145 19-193 180-338 (758)
200 1ojl_A Transcriptional regulat 97.6 2.1E-05 7.2E-10 74.7 3.3 45 20-65 3-47 (304)
201 4b4t_J 26S protease regulatory 97.6 0.00022 7.4E-09 69.4 10.0 153 42-220 181-354 (405)
202 3ogk_B Coronatine-insensitive 97.5 6.1E-05 2.1E-09 78.8 5.2 84 426-510 217-304 (592)
203 1io0_A Tropomodulin; LRR prote 97.5 0.00012 4.2E-09 63.9 6.3 110 394-510 31-162 (185)
204 2p1m_B Transport inhibitor res 97.5 0.00013 4.6E-09 76.2 7.8 129 375-509 106-245 (594)
205 4b4t_L 26S protease subunit RP 97.5 0.00024 8.2E-09 70.2 9.0 153 42-220 214-387 (437)
206 3pxi_A Negative regulator of g 97.5 2.8E-05 9.5E-10 83.9 2.5 157 13-193 485-675 (758)
207 3hu3_A Transitional endoplasmi 97.5 0.0004 1.4E-08 70.2 10.2 175 19-219 204-406 (489)
208 2c9o_A RUVB-like 1; hexameric 97.5 0.00037 1.3E-08 70.2 9.8 91 125-223 297-406 (456)
209 1lv7_A FTSH; alpha/beta domain 97.5 0.0014 4.8E-08 60.4 13.1 130 43-193 45-195 (257)
210 3ogk_B Coronatine-insensitive 97.5 0.0002 6.7E-09 74.9 8.1 138 374-513 378-526 (592)
211 2r62_A Cell division protease 97.4 6.1E-05 2.1E-09 70.2 3.6 47 19-65 11-66 (268)
212 4b4t_K 26S protease regulatory 97.4 0.00017 5.9E-09 71.1 6.9 24 42-65 205-228 (428)
213 3t15_A Ribulose bisphosphate c 97.4 0.00042 1.4E-08 65.3 9.1 24 42-65 35-58 (293)
214 4b4t_H 26S protease regulatory 97.4 0.00034 1.2E-08 69.0 8.4 153 42-220 242-415 (467)
215 2p1m_B Transport inhibitor res 97.4 0.00019 6.3E-09 75.1 7.1 113 397-510 395-517 (594)
216 2cvh_A DNA repair and recombin 97.4 0.00056 1.9E-08 61.3 9.3 86 42-133 19-115 (220)
217 3rw6_A Nuclear RNA export fact 97.4 3.3E-05 1.1E-09 71.4 0.9 81 434-516 148-237 (267)
218 4b4t_M 26S protease regulatory 97.4 7.5E-05 2.5E-09 73.8 3.5 152 42-220 214-387 (434)
219 2ce7_A Cell division protein F 97.3 0.00095 3.2E-08 67.0 10.8 152 43-220 49-221 (476)
220 2ra8_A Uncharacterized protein 97.3 0.00022 7.4E-09 69.4 6.0 106 398-510 192-318 (362)
221 4b4t_I 26S protease regulatory 97.3 0.00056 1.9E-08 66.8 8.1 152 42-220 215-388 (437)
222 2qgz_A Helicase loader, putati 97.2 0.00016 5.4E-09 68.7 3.1 37 43-81 152-189 (308)
223 3cf2_A TER ATPase, transitiona 97.2 0.00066 2.3E-08 72.2 8.2 155 42-222 237-409 (806)
224 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.0002 6.9E-09 67.2 3.4 68 43-133 123-192 (331)
225 1io0_A Tropomodulin; LRR prote 97.1 0.00052 1.8E-08 59.8 5.7 88 424-513 31-136 (185)
226 1g5t_A COB(I)alamin adenosyltr 97.1 0.00038 1.3E-08 60.4 4.3 119 43-163 28-163 (196)
227 1xp8_A RECA protein, recombina 97.0 0.002 6.7E-08 62.4 9.3 85 42-133 73-162 (366)
228 1qvr_A CLPB protein; coiled co 97.0 0.00018 6.2E-09 78.4 1.6 48 18-65 557-610 (854)
229 3hr8_A Protein RECA; alpha and 97.0 0.0012 4.2E-08 63.4 7.2 85 42-133 60-149 (356)
230 3m6a_A ATP-dependent protease 97.0 0.0021 7.1E-08 66.1 9.3 24 42-65 107-130 (543)
231 2zr9_A Protein RECA, recombina 96.9 0.0029 1E-07 60.9 9.5 85 42-133 60-149 (349)
232 2b8t_A Thymidine kinase; deoxy 96.9 0.0004 1.4E-08 62.2 3.0 114 42-163 11-126 (223)
233 1jr3_D DNA polymerase III, del 96.9 0.013 4.5E-07 56.3 14.1 156 42-225 17-183 (343)
234 1r6b_X CLPA protein; AAA+, N-t 96.9 0.00025 8.4E-09 76.5 1.6 53 13-65 452-510 (758)
235 1u94_A RECA protein, recombina 96.9 0.0024 8.2E-08 61.6 8.4 85 42-133 62-151 (356)
236 1v5w_A DMC1, meiotic recombina 96.8 0.0034 1.2E-07 60.4 8.8 90 42-132 121-228 (343)
237 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0029 9.8E-08 57.1 7.7 117 42-163 22-168 (235)
238 3sb4_A Hypothetical leucine ri 96.8 0.0013 4.6E-08 63.0 5.7 87 427-517 224-314 (329)
239 3io5_A Recombination and repai 96.7 0.0039 1.3E-07 58.3 8.2 82 45-133 30-121 (333)
240 2z43_A DNA repair and recombin 96.7 0.0038 1.3E-07 59.7 8.2 90 42-132 106-212 (324)
241 1n0w_A DNA repair protein RAD5 96.6 0.003 1E-07 57.4 6.6 91 42-133 23-129 (243)
242 3e4g_A ATP synthase subunit S, 96.6 0.0026 8.9E-08 54.3 5.5 62 452-513 61-128 (176)
243 2i1q_A DNA repair and recombin 96.5 0.0038 1.3E-07 59.6 6.6 90 42-132 97-213 (322)
244 3sb4_A Hypothetical leucine ri 96.3 0.0055 1.9E-07 58.6 6.5 100 397-506 224-328 (329)
245 2ra8_A Uncharacterized protein 96.3 0.007 2.4E-07 58.6 7.2 109 395-513 168-292 (362)
246 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.8E-08 55.2 3.3 22 44-65 4-25 (178)
247 3bh0_A DNAB-like replicative h 96.2 0.021 7.2E-07 54.2 10.3 52 42-97 67-118 (315)
248 2dhr_A FTSH; AAA+ protein, hex 96.2 0.03 1E-06 56.4 11.8 148 43-220 64-236 (499)
249 1ex7_A Guanylate kinase; subst 96.2 0.0017 5.9E-08 56.2 2.4 22 44-65 2-23 (186)
250 3lw7_A Adenylate kinase relate 96.0 0.0031 1.1E-07 54.0 3.0 20 44-63 2-21 (179)
251 4a74_A DNA repair and recombin 96.0 0.014 4.8E-07 52.4 7.5 43 42-84 24-70 (231)
252 2x8a_A Nuclear valosin-contain 96.0 0.0057 2E-07 56.8 4.9 20 46-65 47-66 (274)
253 4a1f_A DNAB helicase, replicat 96.0 0.023 7.8E-07 54.1 9.0 52 42-97 45-96 (338)
254 3ice_A Transcription terminati 96.0 0.0071 2.4E-07 58.1 5.4 42 42-85 173-216 (422)
255 1rz3_A Hypothetical protein rb 96.0 0.00075 2.6E-08 59.7 -1.3 24 42-65 21-44 (201)
256 1kgd_A CASK, peripheral plasma 96.0 0.0039 1.3E-07 53.9 3.3 23 43-65 5-27 (180)
257 3kb2_A SPBC2 prophage-derived 95.9 0.0037 1.3E-07 53.4 3.0 22 44-65 2-23 (173)
258 1vma_A Cell division protein F 95.9 0.013 4.4E-07 55.2 7.0 89 42-132 103-195 (306)
259 1zp6_A Hypothetical protein AT 95.9 0.0039 1.3E-07 54.3 3.2 23 43-65 9-31 (191)
260 2px0_A Flagellar biosynthesis 95.9 0.019 6.4E-07 53.9 7.9 86 42-132 104-191 (296)
261 1ypw_A Transitional endoplasmi 95.9 0.014 4.8E-07 62.9 7.9 47 19-65 204-260 (806)
262 1ly1_A Polynucleotide kinase; 95.9 0.0035 1.2E-07 54.0 2.7 22 44-65 3-24 (181)
263 2qor_A Guanylate kinase; phosp 95.8 0.0046 1.6E-07 54.6 3.3 25 41-65 10-34 (204)
264 3ney_A 55 kDa erythrocyte memb 95.8 0.0053 1.8E-07 53.6 3.6 24 42-65 18-41 (197)
265 3vaa_A Shikimate kinase, SK; s 95.8 0.0046 1.6E-07 54.4 3.3 24 42-65 24-47 (199)
266 1sky_E F1-ATPase, F1-ATP synth 95.8 0.016 5.4E-07 57.4 7.2 50 43-94 151-202 (473)
267 3lda_A DNA repair protein RAD5 95.8 0.023 7.9E-07 55.6 8.4 91 42-133 177-283 (400)
268 1kag_A SKI, shikimate kinase I 95.8 0.0046 1.6E-07 52.9 3.0 22 44-65 5-26 (173)
269 3trf_A Shikimate kinase, SK; a 95.8 0.005 1.7E-07 53.3 3.2 23 43-65 5-27 (185)
270 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.00086 2.9E-08 67.8 -2.1 51 10-65 13-63 (500)
271 3tau_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 54.3 3.5 24 42-65 7-30 (208)
272 3dm5_A SRP54, signal recogniti 95.7 0.031 1.1E-06 55.2 9.0 24 42-65 99-122 (443)
273 1q57_A DNA primase/helicase; d 95.7 0.043 1.5E-06 55.8 10.3 52 42-97 241-293 (503)
274 2rhm_A Putative kinase; P-loop 95.7 0.0053 1.8E-07 53.5 3.1 23 43-65 5-27 (193)
275 3hws_A ATP-dependent CLP prote 95.7 0.0012 4E-08 64.4 -1.3 56 10-65 6-73 (363)
276 1odf_A YGR205W, hypothetical 3 95.7 0.031 1.1E-06 52.2 8.4 79 42-122 30-117 (290)
277 3uie_A Adenylyl-sulfate kinase 95.7 0.0054 1.8E-07 54.0 3.1 24 42-65 24-47 (200)
278 1knq_A Gluconate kinase; ALFA/ 95.7 0.0059 2E-07 52.3 3.3 23 43-65 8-30 (175)
279 4eun_A Thermoresistant glucoki 95.7 0.0059 2E-07 53.7 3.3 24 42-65 28-51 (200)
280 3rfe_A Platelet glycoprotein I 95.7 0.019 6.4E-07 46.5 6.1 52 433-486 12-66 (130)
281 3iij_A Coilin-interacting nucl 95.6 0.006 2E-07 52.6 3.2 24 42-65 10-33 (180)
282 1y63_A LMAJ004144AAA protein; 95.6 0.0072 2.5E-07 52.4 3.7 24 42-65 9-32 (184)
283 3a00_A Guanylate kinase, GMP k 95.6 0.0057 2E-07 53.1 3.0 22 44-65 2-23 (186)
284 3cmu_A Protein RECA, recombina 95.6 0.022 7.5E-07 66.2 8.5 85 42-133 1426-1515(2050)
285 3t61_A Gluconokinase; PSI-biol 95.6 0.0055 1.9E-07 54.0 2.9 23 43-65 18-40 (202)
286 2q6t_A DNAB replication FORK h 95.6 0.042 1.4E-06 54.9 9.6 52 42-97 199-251 (444)
287 1kht_A Adenylate kinase; phosp 95.6 0.0062 2.1E-07 53.0 3.2 22 44-65 4-25 (192)
288 3tr0_A Guanylate kinase, GMP k 95.6 0.0069 2.3E-07 53.4 3.5 24 42-65 6-29 (205)
289 1nn5_A Similar to deoxythymidy 95.5 0.011 3.8E-07 52.4 4.7 24 42-65 8-31 (215)
290 1nks_A Adenylate kinase; therm 95.5 0.0098 3.4E-07 51.7 4.2 21 45-65 3-23 (194)
291 2r44_A Uncharacterized protein 95.5 0.0012 4.2E-08 63.3 -2.0 44 17-65 25-68 (331)
292 2j41_A Guanylate kinase; GMP, 95.5 0.0081 2.8E-07 53.0 3.5 23 43-65 6-28 (207)
293 2r6a_A DNAB helicase, replicat 95.4 0.06 2.1E-06 53.9 10.1 51 42-95 202-252 (454)
294 2c95_A Adenylate kinase 1; tra 95.4 0.0087 3E-07 52.2 3.5 23 43-65 9-31 (196)
295 1pzn_A RAD51, DNA repair and r 95.4 0.018 6.1E-07 55.5 5.9 44 42-85 130-177 (349)
296 1lvg_A Guanylate kinase, GMP k 95.4 0.0077 2.6E-07 52.9 2.9 23 43-65 4-26 (198)
297 2iyv_A Shikimate kinase, SK; t 95.3 0.0082 2.8E-07 51.9 3.0 22 44-65 3-24 (184)
298 2cdn_A Adenylate kinase; phosp 95.3 0.01 3.6E-07 52.1 3.7 23 43-65 20-42 (201)
299 4gp7_A Metallophosphoesterase; 95.3 0.0074 2.5E-07 51.6 2.6 23 43-65 9-31 (171)
300 2yvu_A Probable adenylyl-sulfa 95.3 0.014 4.7E-07 50.6 4.4 23 43-65 13-35 (186)
301 1gvn_B Zeta; postsegregational 95.3 0.007 2.4E-07 56.6 2.6 24 42-65 32-55 (287)
302 3cf2_A TER ATPase, transitiona 95.3 0.017 5.8E-07 61.5 5.7 72 42-134 510-581 (806)
303 2z0h_A DTMP kinase, thymidylat 95.3 0.02 6.8E-07 49.9 5.4 21 45-65 2-22 (197)
304 1via_A Shikimate kinase; struc 95.3 0.0086 2.9E-07 51.3 2.9 21 45-65 6-26 (175)
305 2wwf_A Thymidilate kinase, put 95.3 0.012 4.1E-07 52.1 3.9 24 42-65 9-32 (212)
306 3c8u_A Fructokinase; YP_612366 95.3 0.0072 2.5E-07 53.6 2.4 24 42-65 21-44 (208)
307 2qt1_A Nicotinamide riboside k 95.2 0.0098 3.4E-07 52.6 3.2 23 43-65 21-43 (207)
308 1zuh_A Shikimate kinase; alpha 95.2 0.0097 3.3E-07 50.6 3.0 23 43-65 7-29 (168)
309 3bgw_A DNAB-like replicative h 95.2 0.067 2.3E-06 53.2 9.5 50 42-95 196-245 (444)
310 1ukz_A Uridylate kinase; trans 95.2 0.01 3.6E-07 52.2 3.3 24 42-65 14-37 (203)
311 1qf9_A UMP/CMP kinase, protein 95.2 0.012 3.9E-07 51.3 3.5 23 43-65 6-28 (194)
312 1tev_A UMP-CMP kinase; ploop, 95.2 0.0085 2.9E-07 52.2 2.7 22 44-65 4-25 (196)
313 2bwj_A Adenylate kinase 5; pho 95.2 0.011 3.7E-07 51.8 3.3 23 43-65 12-34 (199)
314 2vli_A Antibiotic resistance p 95.2 0.0074 2.5E-07 52.1 2.1 23 43-65 5-27 (183)
315 2ck3_D ATP synthase subunit be 95.1 0.069 2.3E-06 52.8 9.1 54 42-97 152-207 (482)
316 1e6c_A Shikimate kinase; phosp 95.1 0.01 3.4E-07 50.7 2.9 22 44-65 3-24 (173)
317 2ze6_A Isopentenyl transferase 95.1 0.0098 3.4E-07 54.5 2.9 21 45-65 3-23 (253)
318 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.0096 3.3E-07 54.8 2.8 23 43-65 4-26 (260)
319 1uf9_A TT1252 protein; P-loop, 95.1 0.011 3.8E-07 51.9 3.1 24 42-65 7-30 (203)
320 1z6g_A Guanylate kinase; struc 95.1 0.012 4E-07 52.6 3.2 24 42-65 22-45 (218)
321 3asz_A Uridine kinase; cytidin 95.1 0.011 3.7E-07 52.4 3.0 23 43-65 6-28 (211)
322 1fx0_B ATP synthase beta chain 95.1 0.097 3.3E-06 52.0 9.9 53 42-96 164-218 (498)
323 2plr_A DTMP kinase, probable t 95.1 0.01 3.5E-07 52.5 2.8 22 44-65 5-26 (213)
324 2pbr_A DTMP kinase, thymidylat 95.0 0.027 9.4E-07 48.9 5.5 21 45-65 2-22 (195)
325 2bdt_A BH3686; alpha-beta prot 95.0 0.011 3.8E-07 51.3 2.9 22 44-65 3-24 (189)
326 1s96_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 52.3 3.3 24 42-65 15-38 (219)
327 1zak_A Adenylate kinase; ATP:A 95.0 0.014 4.6E-07 52.3 3.5 23 43-65 5-27 (222)
328 3kl4_A SRP54, signal recogniti 95.0 0.056 1.9E-06 53.3 8.1 39 42-82 96-134 (433)
329 1aky_A Adenylate kinase; ATP:A 95.0 0.014 4.7E-07 52.2 3.3 23 43-65 4-26 (220)
330 1znw_A Guanylate kinase, GMP k 95.0 0.014 4.8E-07 51.6 3.4 24 42-65 19-42 (207)
331 3cmu_A Protein RECA, recombina 95.0 0.048 1.6E-06 63.5 8.5 86 42-134 382-472 (2050)
332 2jaq_A Deoxyguanosine kinase; 94.9 0.012 4.1E-07 51.7 2.9 21 45-65 2-22 (205)
333 3e70_C DPA, signal recognition 94.9 0.088 3E-06 50.0 9.1 56 42-99 128-184 (328)
334 1zd8_A GTP:AMP phosphotransfer 94.9 0.014 4.8E-07 52.4 3.3 23 43-65 7-29 (227)
335 2v54_A DTMP kinase, thymidylat 94.9 0.015 5.1E-07 51.1 3.5 23 43-65 4-26 (204)
336 3cm0_A Adenylate kinase; ATP-b 94.9 0.012 4.2E-07 50.8 2.9 22 44-65 5-26 (186)
337 3umf_A Adenylate kinase; rossm 94.9 0.013 4.4E-07 52.1 2.9 24 42-65 28-51 (217)
338 1cke_A CK, MSSA, protein (cyti 94.9 0.014 4.7E-07 52.4 3.1 22 44-65 6-27 (227)
339 2bbw_A Adenylate kinase 4, AK4 94.9 0.015 5E-07 53.0 3.3 23 43-65 27-49 (246)
340 1jjv_A Dephospho-COA kinase; P 94.8 0.014 4.6E-07 51.6 3.0 21 45-65 4-24 (206)
341 3rfe_A Platelet glycoprotein I 94.8 0.023 7.8E-07 46.0 4.0 53 455-510 11-66 (130)
342 1ye8_A Protein THEP1, hypothet 94.8 0.015 5.1E-07 50.1 3.0 21 45-65 2-22 (178)
343 2if2_A Dephospho-COA kinase; a 94.8 0.015 5.2E-07 51.1 3.2 21 45-65 3-23 (204)
344 3cmw_A Protein RECA, recombina 94.8 0.048 1.7E-06 62.6 7.8 86 42-134 382-472 (1706)
345 1xjc_A MOBB protein homolog; s 94.8 0.026 9E-07 47.8 4.4 23 43-65 4-26 (169)
346 2pt5_A Shikimate kinase, SK; a 94.7 0.015 5E-07 49.4 2.8 21 45-65 2-22 (168)
347 1uj2_A Uridine-cytidine kinase 94.7 0.014 4.8E-07 53.4 2.8 24 42-65 21-44 (252)
348 1tue_A Replication protein E1; 94.7 0.012 4.2E-07 51.2 2.2 23 43-65 58-80 (212)
349 2pez_A Bifunctional 3'-phospho 94.7 0.015 5.1E-07 50.0 2.8 23 43-65 5-27 (179)
350 3jvv_A Twitching mobility prot 94.7 0.016 5.4E-07 55.9 3.2 112 43-166 123-234 (356)
351 2f6r_A COA synthase, bifunctio 94.6 0.02 6.9E-07 53.3 3.7 22 43-64 75-96 (281)
352 2xxa_A Signal recognition part 94.6 0.12 4.2E-06 51.1 9.5 40 42-83 99-139 (433)
353 1rj9_A FTSY, signal recognitio 94.6 0.027 9.3E-07 52.9 4.6 24 42-65 101-124 (304)
354 2ffh_A Protein (FFH); SRP54, s 94.6 0.065 2.2E-06 52.7 7.4 39 42-82 97-135 (425)
355 1zu4_A FTSY; GTPase, signal re 94.6 0.087 3E-06 49.9 8.1 39 42-82 104-142 (320)
356 1gtv_A TMK, thymidylate kinase 94.6 0.012 4E-07 52.3 1.9 21 45-65 2-22 (214)
357 3fb4_A Adenylate kinase; psych 94.6 0.017 5.7E-07 51.4 2.9 20 46-65 3-22 (216)
358 2p5t_B PEZT; postsegregational 94.6 0.013 4.4E-07 53.7 2.2 24 42-65 31-54 (253)
359 3tlx_A Adenylate kinase 2; str 94.6 0.017 5.8E-07 52.6 2.9 23 43-65 29-51 (243)
360 3llm_A ATP-dependent RNA helic 94.5 0.03 1E-06 50.5 4.5 22 43-64 76-97 (235)
361 1ls1_A Signal recognition part 94.5 0.09 3.1E-06 49.2 7.8 89 42-132 97-189 (295)
362 2jeo_A Uridine-cytidine kinase 94.5 0.018 6.1E-07 52.4 2.9 23 43-65 25-47 (245)
363 3lnc_A Guanylate kinase, GMP k 94.5 0.014 4.8E-07 52.6 2.2 24 42-65 26-50 (231)
364 3aez_A Pantothenate kinase; tr 94.5 0.018 6E-07 54.5 3.0 24 42-65 89-112 (312)
365 2dr3_A UPF0273 protein PH0284; 94.5 0.031 1.1E-06 50.6 4.6 40 42-83 22-61 (247)
366 3dl0_A Adenylate kinase; phosp 94.5 0.018 6.3E-07 51.1 2.9 20 46-65 3-22 (216)
367 3pqc_A Probable GTP-binding pr 94.5 0.052 1.8E-06 46.9 5.8 31 36-66 16-46 (195)
368 3upu_A ATP-dependent DNA helic 94.4 0.027 9.3E-07 56.5 4.4 22 44-65 46-67 (459)
369 2grj_A Dephospho-COA kinase; T 94.4 0.019 6.6E-07 50.0 2.9 22 44-65 13-34 (192)
370 3e1s_A Exodeoxyribonuclease V, 94.4 0.076 2.6E-06 54.7 7.7 23 43-65 204-226 (574)
371 4e22_A Cytidylate kinase; P-lo 94.4 0.022 7.7E-07 52.0 3.4 23 43-65 27-49 (252)
372 1ixz_A ATP-dependent metallopr 94.4 0.021 7.1E-07 52.3 3.1 21 45-65 51-71 (254)
373 1m7g_A Adenylylsulfate kinase; 94.4 0.02 6.8E-07 50.7 2.9 23 43-65 25-47 (211)
374 3zvl_A Bifunctional polynucleo 94.3 0.023 7.8E-07 56.2 3.5 24 42-65 257-280 (416)
375 3nwj_A ATSK2; P loop, shikimat 94.3 0.022 7.5E-07 51.9 3.1 23 43-65 48-70 (250)
376 1htw_A HI0065; nucleotide-bind 94.3 0.022 7.5E-07 47.8 2.9 23 43-65 33-55 (158)
377 2ewv_A Twitching motility prot 94.3 0.024 8.3E-07 55.1 3.6 109 42-164 135-245 (372)
378 3a8t_A Adenylate isopentenyltr 94.3 0.018 6E-07 54.6 2.4 22 44-65 41-62 (339)
379 1cr0_A DNA primase/helicase; R 94.2 0.072 2.5E-06 49.9 6.7 39 42-82 34-73 (296)
380 1vht_A Dephospho-COA kinase; s 94.2 0.022 7.6E-07 50.7 3.0 22 44-65 5-26 (218)
381 2ehv_A Hypothetical protein PH 94.2 0.025 8.5E-07 51.5 3.3 24 42-65 29-52 (251)
382 3tif_A Uncharacterized ABC tra 94.2 0.027 9.3E-07 50.8 3.5 24 42-65 30-53 (235)
383 3tqc_A Pantothenate kinase; bi 94.2 0.025 8.5E-07 53.5 3.3 78 42-123 91-171 (321)
384 2f1r_A Molybdopterin-guanine d 94.2 0.021 7.2E-07 48.6 2.5 22 44-65 3-24 (171)
385 2r9v_A ATP synthase subunit al 94.1 0.063 2.2E-06 53.4 6.1 87 42-132 174-276 (515)
386 1j8m_F SRP54, signal recogniti 94.1 0.12 4.2E-06 48.3 7.9 88 43-132 98-189 (297)
387 4eaq_A DTMP kinase, thymidylat 94.1 0.034 1.2E-06 50.0 3.9 24 42-65 25-48 (229)
388 4edh_A DTMP kinase, thymidylat 94.1 0.062 2.1E-06 47.6 5.5 23 43-65 6-28 (213)
389 3exa_A TRNA delta(2)-isopenten 94.1 0.023 8E-07 53.1 2.8 23 43-65 3-25 (322)
390 1ak2_A Adenylate kinase isoenz 94.1 0.03 1E-06 50.4 3.5 23 43-65 16-38 (233)
391 2pcj_A ABC transporter, lipopr 94.0 0.03 1E-06 50.1 3.4 24 42-65 29-52 (224)
392 3be4_A Adenylate kinase; malar 94.0 0.026 8.8E-07 50.3 2.9 22 44-65 6-27 (217)
393 2qmh_A HPR kinase/phosphorylas 94.0 0.024 8.1E-07 49.1 2.5 23 43-65 34-56 (205)
394 2qe7_A ATP synthase subunit al 94.0 0.069 2.4E-06 53.1 6.1 87 42-132 161-263 (502)
395 3ake_A Cytidylate kinase; CMP 94.0 0.029 9.9E-07 49.4 3.2 22 44-65 3-24 (208)
396 3foz_A TRNA delta(2)-isopenten 94.0 0.028 9.6E-07 52.4 3.1 23 43-65 10-32 (316)
397 3l0o_A Transcription terminati 94.0 0.022 7.4E-07 54.7 2.3 42 41-84 173-216 (427)
398 2xb4_A Adenylate kinase; ATP-b 93.9 0.027 9.2E-07 50.4 2.9 21 45-65 2-22 (223)
399 1np6_A Molybdopterin-guanine d 93.9 0.03 1E-06 47.8 3.0 23 43-65 6-28 (174)
400 3vr4_D V-type sodium ATPase su 93.9 0.088 3E-06 51.7 6.6 89 42-132 150-257 (465)
401 1e4v_A Adenylate kinase; trans 93.9 0.029 9.9E-07 49.8 3.0 20 46-65 3-22 (214)
402 2cbz_A Multidrug resistance-as 93.9 0.033 1.1E-06 50.3 3.5 24 42-65 30-53 (237)
403 1iy2_A ATP-dependent metallopr 93.9 0.026 8.8E-07 52.5 2.7 21 45-65 75-95 (278)
404 1sq5_A Pantothenate kinase; P- 93.9 0.03 1E-06 52.8 3.3 24 42-65 79-102 (308)
405 2eyu_A Twitching motility prot 93.9 0.035 1.2E-06 51.0 3.5 112 42-165 24-135 (261)
406 3sr0_A Adenylate kinase; phosp 93.8 0.03 1E-06 49.3 2.9 21 45-65 2-22 (206)
407 1ltq_A Polynucleotide kinase; 93.8 0.026 8.9E-07 53.1 2.7 22 44-65 3-24 (301)
408 3r20_A Cytidylate kinase; stru 93.8 0.033 1.1E-06 50.0 3.2 23 43-65 9-31 (233)
409 4tmk_A Protein (thymidylate ki 93.8 0.088 3E-06 46.6 5.9 23 43-65 3-25 (213)
410 3cmw_A Protein RECA, recombina 93.8 0.1 3.5E-06 60.0 7.8 84 42-132 1430-1518(1706)
411 2orw_A Thymidine kinase; TMTK, 93.8 0.063 2.1E-06 46.3 4.9 23 43-65 3-25 (184)
412 3lv8_A DTMP kinase, thymidylat 93.8 0.087 3E-06 47.4 5.9 23 43-65 27-49 (236)
413 3crm_A TRNA delta(2)-isopenten 93.8 0.028 9.5E-07 53.0 2.7 22 44-65 6-27 (323)
414 2i3b_A HCR-ntpase, human cance 93.7 0.034 1.2E-06 48.3 3.0 22 44-65 2-23 (189)
415 1sgw_A Putative ABC transporte 93.7 0.035 1.2E-06 49.2 3.2 24 42-65 34-57 (214)
416 1um8_A ATP-dependent CLP prote 93.7 0.028 9.6E-07 54.8 2.8 56 10-65 12-94 (376)
417 1a7j_A Phosphoribulokinase; tr 93.7 0.018 6.3E-07 53.8 1.3 24 42-65 4-27 (290)
418 1b0u_A Histidine permease; ABC 93.7 0.038 1.3E-06 50.7 3.4 24 42-65 31-54 (262)
419 4fdw_A Leucine rich hypothetic 93.7 0.097 3.3E-06 51.4 6.5 87 426-517 268-362 (401)
420 3hjn_A DTMP kinase, thymidylat 93.6 0.088 3E-06 46.0 5.5 33 45-79 2-34 (197)
421 3v9p_A DTMP kinase, thymidylat 93.6 0.062 2.1E-06 48.0 4.6 24 42-65 24-47 (227)
422 2ged_A SR-beta, signal recogni 93.6 0.023 7.7E-07 49.3 1.7 25 42-66 47-71 (193)
423 3d3q_A TRNA delta(2)-isopenten 93.6 0.033 1.1E-06 52.9 2.9 22 44-65 8-29 (340)
424 2onk_A Molybdate/tungstate ABC 93.6 0.039 1.3E-06 49.9 3.2 22 44-65 25-46 (240)
425 3b5x_A Lipid A export ATP-bind 93.6 0.19 6.5E-06 52.0 8.9 24 42-65 368-391 (582)
426 4fdw_A Leucine rich hypothetic 93.6 0.17 5.7E-06 49.7 8.0 111 393-509 265-380 (401)
427 2v9p_A Replication protein E1; 93.5 0.041 1.4E-06 51.6 3.4 24 42-65 125-148 (305)
428 2olj_A Amino acid ABC transpor 93.5 0.042 1.4E-06 50.5 3.4 24 42-65 49-72 (263)
429 3gfo_A Cobalt import ATP-bindi 93.5 0.039 1.3E-06 51.0 3.2 24 42-65 33-56 (275)
430 2ck3_A ATP synthase subunit al 93.5 0.098 3.4E-06 52.1 6.2 89 42-132 161-271 (510)
431 3oaa_A ATP synthase subunit al 93.5 0.15 5.2E-06 50.6 7.5 87 42-132 161-263 (513)
432 4g1u_C Hemin import ATP-bindin 93.4 0.042 1.4E-06 50.6 3.3 24 42-65 36-59 (266)
433 3fwy_A Light-independent proto 93.4 0.067 2.3E-06 50.5 4.7 41 42-84 47-87 (314)
434 2ghi_A Transport protein; mult 93.4 0.045 1.5E-06 50.2 3.5 24 42-65 45-68 (260)
435 1vpl_A ABC transporter, ATP-bi 93.4 0.045 1.5E-06 50.0 3.4 24 42-65 40-63 (256)
436 3eph_A TRNA isopentenyltransfe 93.4 0.037 1.3E-06 53.7 3.0 23 43-65 2-24 (409)
437 1yrb_A ATP(GTP)binding protein 93.4 0.057 1.9E-06 49.5 4.2 24 42-65 13-36 (262)
438 2pze_A Cystic fibrosis transme 93.4 0.044 1.5E-06 49.2 3.3 24 42-65 33-56 (229)
439 2ff7_A Alpha-hemolysin translo 93.4 0.044 1.5E-06 49.9 3.3 24 42-65 34-57 (247)
440 2r8r_A Sensor protein; KDPD, P 93.4 0.089 3E-06 46.7 5.1 38 45-84 8-45 (228)
441 3kta_A Chromosome segregation 93.4 0.047 1.6E-06 46.9 3.4 22 44-65 27-48 (182)
442 1ji0_A ABC transporter; ATP bi 93.4 0.044 1.5E-06 49.6 3.3 24 42-65 31-54 (240)
443 3f9v_A Minichromosome maintena 93.4 0.023 8E-07 58.9 1.6 53 13-65 289-349 (595)
444 2ixe_A Antigen peptide transpo 93.4 0.046 1.6E-06 50.5 3.5 24 42-65 44-67 (271)
445 1g6h_A High-affinity branched- 93.4 0.045 1.5E-06 50.2 3.3 24 42-65 32-55 (257)
446 1svm_A Large T antigen; AAA+ f 93.4 0.045 1.5E-06 53.0 3.5 24 42-65 168-191 (377)
447 2zu0_C Probable ATP-dependent 93.3 0.047 1.6E-06 50.3 3.4 24 42-65 45-68 (267)
448 3ld9_A DTMP kinase, thymidylat 93.3 0.072 2.5E-06 47.4 4.5 24 42-65 20-43 (223)
449 1tf7_A KAIC; homohexamer, hexa 93.3 0.07 2.4E-06 54.5 5.1 24 42-65 280-303 (525)
450 3mfy_A V-type ATP synthase alp 93.3 0.19 6.3E-06 50.6 7.7 49 42-94 226-275 (588)
451 1mv5_A LMRA, multidrug resista 93.3 0.041 1.4E-06 49.9 2.9 24 42-65 27-50 (243)
452 2d2e_A SUFC protein; ABC-ATPas 93.3 0.048 1.6E-06 49.7 3.3 24 42-65 28-51 (250)
453 2j37_W Signal recognition part 93.3 0.36 1.2E-05 48.6 10.0 39 42-82 100-138 (504)
454 2vp4_A Deoxynucleoside kinase; 93.3 0.034 1.2E-06 50.0 2.3 24 42-65 19-42 (230)
455 1fx0_A ATP synthase alpha chai 93.2 0.067 2.3E-06 53.2 4.5 50 41-94 161-213 (507)
456 1nlf_A Regulatory protein REPA 93.2 0.048 1.7E-06 50.6 3.4 24 42-65 29-52 (279)
457 2yz2_A Putative ABC transporte 93.2 0.05 1.7E-06 50.1 3.5 24 42-65 32-55 (266)
458 3b9q_A Chloroplast SRP recepto 93.2 0.054 1.8E-06 50.9 3.7 24 42-65 99-122 (302)
459 2qi9_C Vitamin B12 import ATP- 93.2 0.051 1.7E-06 49.5 3.3 24 42-65 25-48 (249)
460 3nh6_A ATP-binding cassette SU 93.1 0.051 1.7E-06 51.0 3.3 24 42-65 79-102 (306)
461 3b85_A Phosphate starvation-in 93.1 0.036 1.2E-06 48.9 2.1 23 43-65 22-44 (208)
462 2nq2_C Hypothetical ABC transp 93.0 0.055 1.9E-06 49.4 3.3 24 42-65 30-53 (253)
463 2zej_A Dardarin, leucine-rich 93.0 0.049 1.7E-06 46.9 2.8 22 45-66 4-25 (184)
464 2ihy_A ABC transporter, ATP-bi 93.0 0.055 1.9E-06 50.2 3.3 24 42-65 46-69 (279)
465 3gqb_B V-type ATP synthase bet 93.0 0.11 3.6E-06 51.2 5.4 91 42-132 146-260 (464)
466 2c61_A A-type ATP synthase non 92.9 0.089 3E-06 52.0 4.9 91 42-132 151-258 (469)
467 2fz4_A DNA repair protein RAD2 92.9 0.22 7.6E-06 44.8 7.2 105 45-163 110-229 (237)
468 2j9r_A Thymidine kinase; TK1, 92.9 0.12 4.2E-06 45.3 5.2 110 43-163 28-138 (214)
469 1u0j_A DNA replication protein 92.8 0.054 1.9E-06 49.4 3.0 23 43-65 104-126 (267)
470 1q3t_A Cytidylate kinase; nucl 92.8 0.064 2.2E-06 48.3 3.5 23 43-65 16-38 (236)
471 3fvq_A Fe(3+) IONS import ATP- 92.8 0.065 2.2E-06 51.4 3.6 24 42-65 29-52 (359)
472 2ocp_A DGK, deoxyguanosine kin 92.7 0.057 2E-06 48.8 3.0 22 44-65 3-24 (241)
473 2hf9_A Probable hydrogenase ni 92.6 0.061 2.1E-06 48.0 3.1 23 43-65 38-60 (226)
474 1p5z_B DCK, deoxycytidine kina 92.6 0.033 1.1E-06 51.2 1.3 24 42-65 23-46 (263)
475 3k1j_A LON protease, ATP-depen 92.6 0.019 6.4E-07 59.9 -0.4 42 19-65 41-82 (604)
476 3iqw_A Tail-anchored protein t 92.6 0.13 4.3E-06 49.0 5.3 42 42-85 15-56 (334)
477 2wji_A Ferrous iron transport 92.6 0.062 2.1E-06 45.2 2.9 23 44-66 4-26 (165)
478 1svi_A GTP-binding protein YSX 92.6 0.092 3.1E-06 45.4 4.1 27 40-66 20-46 (195)
479 3io3_A DEHA2D07832P; chaperone 92.6 0.13 4.3E-06 49.3 5.3 41 42-84 17-59 (348)
480 1oix_A RAS-related protein RAB 92.6 0.061 2.1E-06 46.6 2.9 22 45-66 31-52 (191)
481 2og2_A Putative signal recogni 92.5 0.074 2.5E-06 51.1 3.6 24 42-65 156-179 (359)
482 2bbs_A Cystic fibrosis transme 92.5 0.075 2.6E-06 49.5 3.6 24 42-65 63-86 (290)
483 2zts_A Putative uncharacterize 92.4 0.076 2.6E-06 48.1 3.5 42 42-84 29-70 (251)
484 3tqf_A HPR(Ser) kinase; transf 92.3 0.073 2.5E-06 44.9 2.9 22 44-65 17-38 (181)
485 1g41_A Heat shock protein HSLU 92.3 0.058 2E-06 53.3 2.6 23 43-65 50-72 (444)
486 4hlc_A DTMP kinase, thymidylat 92.3 0.074 2.5E-06 46.8 3.1 29 44-74 3-31 (205)
487 2axn_A 6-phosphofructo-2-kinas 92.3 0.071 2.4E-06 54.2 3.3 23 43-65 35-57 (520)
488 2lkc_A Translation initiation 92.2 0.11 3.9E-06 43.9 4.2 25 42-66 7-31 (178)
489 2wsm_A Hydrogenase expression/ 92.2 0.071 2.4E-06 47.3 2.9 23 43-65 30-52 (221)
490 1g8p_A Magnesium-chelatase 38 92.2 0.034 1.1E-06 53.5 0.7 43 20-65 25-67 (350)
491 2f9l_A RAB11B, member RAS onco 92.1 0.069 2.4E-06 46.6 2.7 22 45-66 7-28 (199)
492 2yhs_A FTSY, cell division pro 92.1 0.09 3.1E-06 52.5 3.8 39 42-83 292-330 (503)
493 3d31_A Sulfate/molybdate ABC t 92.1 0.08 2.7E-06 50.6 3.3 24 42-65 25-48 (348)
494 1ny5_A Transcriptional regulat 92.1 0.55 1.9E-05 45.7 9.4 45 20-65 138-182 (387)
495 3rlf_A Maltose/maltodextrin im 92.1 0.086 2.9E-06 51.0 3.4 24 42-65 28-51 (381)
496 2yyz_A Sugar ABC transporter, 92.0 0.088 3E-06 50.6 3.5 24 42-65 28-51 (359)
497 2pjz_A Hypothetical protein ST 92.0 0.086 2.9E-06 48.3 3.2 23 43-65 30-52 (263)
498 2it1_A 362AA long hypothetical 92.0 0.089 3E-06 50.6 3.4 24 42-65 28-51 (362)
499 2gza_A Type IV secretion syste 92.0 0.086 3E-06 50.9 3.4 24 42-65 174-197 (361)
500 3p32_A Probable GTPase RV1496/ 92.0 0.13 4.4E-06 49.6 4.6 24 42-65 78-101 (355)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.5e-44 Score=371.86 Aligned_cols=316 Identities=17% Similarity=0.231 Sum_probs=238.7
Q ss_pred ccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC--ChhhhcCCCceEEEEEcCCC--CHHHHHHHHHHH
Q 048774 22 PCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN--DDRVQNHFDLKAWTCVSDDF--DVIRLTKTILTS 97 (519)
Q Consensus 22 ~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~ 97 (519)
+||+++++.|.+.+....+...++++|+||||+||||||+++|+ +.+++.+|++++|++++... +...++..++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999988766433233467888999999999999999997 56889999999999998875 788999999999
Q ss_pred hhccCC------CCCCCHHHHHHHHHHHhcCC-eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcC
Q 048774 98 IVTHQN------VDNLNLNKLQEELNKQLSGK-KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG 170 (519)
Q Consensus 98 l~~~~~------~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~ 170 (519)
+..... ....+.+.+...+++.|+++ ++||||||+|+.++..|.. .+||+||||||++.++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcC
Confidence 986532 12334567789999999996 9999999998854332321 16999999999999987765
Q ss_pred -CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhccccc
Q 048774 171 -TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWE 249 (519)
Q Consensus 171 -~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~ 249 (519)
....|++++|+.+||++||.++++... .++..++.+.+|+++|+|+||||+++|+.++.+ . .+|...+.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~ 357 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLES 357 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhc
Confidence 335799999999999999999987543 235678899999999999999999999999875 3 2333334332211
Q ss_pred CcccccchhhHHHHhhhcCCcchhhHhh-----------hhccCCCCCccChHHHHHHHHHC--CCccCCCCCCChHHHH
Q 048774 250 LPEERCRIIPALAVSYYYLPPTLKQCFA-----------YCSLLPKDYEFEEEEIILLWCAS--GFLDHKEVENPSEDLG 316 (519)
Q Consensus 250 ~~~~~~~~~~~l~~s~~~L~~~~~~~ll-----------~la~f~~~~~i~~~~l~~~w~~~--~~~~~~~~~~~~~~~~ 316 (519)
. ....+..++..||+.|+++.+.||+ +||+||+++.++ +..|+++ |++.........++.+
T Consensus 358 ~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 358 R--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp H--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 1 1123555566666666555566655 999999999998 7899999 8887654344556666
Q ss_pred HHHHHHHHHccCcccccC-CCCeEEEeHHHHHHHHHHhcccc
Q 048774 317 RDFFKELRSRSFFQQSAT-DASRFVMHDLINDLARWAAGETY 357 (519)
Q Consensus 317 ~~~l~~L~~~sLi~~~~~-~~~~~~~H~lv~~~~~~~~~~~~ 357 (519)
+ ++++|++++|++.... +..+|.||++||+|++..+.++.
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 6 9999999999987653 35689999999999998776654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.6e-36 Score=320.73 Aligned_cols=285 Identities=18% Similarity=0.257 Sum_probs=220.6
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCc-eEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDL-KAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.|||+++++.|.+.+... +..++++|+||||+||||||++++++.+++.+|+. ++|++++...+...+...++..+.
T Consensus 130 ~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 399999999887765421 23678889999999999999999987678899985 999999998888888777777544
Q ss_pred ccCC---CC-------CCCHHHHHHHHHHHh---cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHH
Q 048774 100 THQN---VD-------NLNLNKLQEELNKQL---SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA 166 (519)
Q Consensus 100 ~~~~---~~-------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 166 (519)
.... .. ..+.+.+...++..+ .++++||||||+|+. ..|..+ + +||+||||||++.+.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCSHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccChHHH
Confidence 3211 01 112345566677665 689999999999873 234332 2 599999999999887
Q ss_pred HhcCCCCeeecC------CCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCC-CCHHHH
Q 048774 167 KIMGTLPAYQLK------KLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGE-HDRREW 239 (519)
Q Consensus 167 ~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~-~~~~~w 239 (519)
..+.....|.++ +|+.+||++||.+.. ... . .+...++ |+|+||||+++|+.|+.+ ...+.|
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 543323356676 899999999999984 221 1 2233333 999999999999999877 366778
Q ss_pred HHHHhcccccCcccccchhhHHHHhhhcCCcch-hhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHH
Q 048774 240 ERVLSSKIWELPEERCRIIPALAVSYYYLPPTL-KQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRD 318 (519)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~-~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~ 318 (519)
... ....+..++..||+.|+++. |+||++||+||.++.|+.+.++..|.++| ++.+..
T Consensus 348 ~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~ 406 (1221)
T 1vt4_I 348 KHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMV 406 (1221)
T ss_dssp HHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHH
T ss_pred hcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHH
Confidence 642 13468999999999999999 99999999999999999999999997665 235788
Q ss_pred HHHHHHHccCcccccCCCCeEEEeHHHHHHH
Q 048774 319 FFKELRSRSFFQQSATDASRFVMHDLINDLA 349 (519)
Q Consensus 319 ~l~~L~~~sLi~~~~~~~~~~~~H~lv~~~~ 349 (519)
++++|+++||++... +..+|.||+++++++
T Consensus 407 ~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 999999999999753 457899999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-35 Score=341.09 Aligned_cols=309 Identities=20% Similarity=0.295 Sum_probs=239.3
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhh-hcCC-CceEEEEEcCCCC--HHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRV-QNHF-DLKAWTCVSDDFD--VIRLTKTI 94 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~~~~~i 94 (519)
..||||+++++.|.+.+... ++..++++|+||||+||||||.+++++... ..+| +.++|++++.... ....++.+
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhc-cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 56999999999998766422 235678889999999999999999996543 4555 5778999988533 34456667
Q ss_pred HHHhhccCC---CCCCCHHHHHHHHHHHhcCC--eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHh-
Q 048774 95 LTSIVTHQN---VDNLNLNKLQEELNKQLSGK--KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKI- 168 (519)
Q Consensus 95 l~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~- 168 (519)
+..+..... ....+.+.....++..+.++ ++||||||+|+.. .+. ..+++|+||||||++.++..
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~-------~~~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLK-------AFDNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHT-------TTCSSCEEEEEESSTTTTTTC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHH-------hhcCCCEEEEEcCCHHHHHhh
Confidence 777665432 23467788889999999877 9999999998642 222 23579999999999988743
Q ss_pred cCCCCeeecCC-CChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhccc
Q 048774 169 MGTLPAYQLKK-LSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKI 247 (519)
Q Consensus 169 ~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~ 247 (519)
......+.+.. |+.+||++||...+.... +..++.+.+|+++|+|+||||+++|++|+.+. ..|...+....
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 34557789986 999999999998874322 22356789999999999999999999998763 34666555432
Q ss_pred ccC--------cccccchhhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHHHHH
Q 048774 248 WEL--------PEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLGRDF 319 (519)
Q Consensus 248 ~~~--------~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~ 319 (519)
... ......+..++.+||+.|+++.|.||++||+||.++.|+.+.++..|.++ ++.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHH
Confidence 211 11224688999999999999999999999999999999999999999432 4578899
Q ss_pred HHHHHHccCcccccCC-CCeEEEeHHHHHHHHHHhccc
Q 048774 320 FKELRSRSFFQQSATD-ASRFVMHDLINDLARWAAGET 356 (519)
Q Consensus 320 l~~L~~~sLi~~~~~~-~~~~~~H~lv~~~~~~~~~~~ 356 (519)
+++|++++|++....+ ..+|.||+++|+|++....++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999876532 336999999999999887665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=306.21 Aligned_cols=306 Identities=23% Similarity=0.319 Sum_probs=229.7
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhh-hcCC-CceEEEEEcCCCCHHHHHHHH-
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRV-QNHF-DLKAWTCVSDDFDVIRLTKTI- 94 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i- 94 (519)
...||||+++++.|.+.+... .+..++++|+||||+||||||.+++++..+ +.+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc-cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 356999999999998766532 235678889999999999999999997655 7889 48999999875 333333333
Q ss_pred --HHHhhccC---CCCCCCHHHHHHHHHHHhcC--CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHH
Q 048774 95 --LTSIVTHQ---NVDNLNLNKLQEELNKQLSG--KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAK 167 (519)
Q Consensus 95 --l~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 167 (519)
+..+.... .....+.+.....+...+.+ +++||||||+|+.. .+. . .+++++||||||+..+..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~----~---l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK----A---FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH----T---TCSSCEEEEEESCGGGGT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH----H---hcCCCeEEEECCCcHHHH
Confidence 33443211 22445677778888888766 78999999997632 121 2 256899999999988765
Q ss_pred hcCCCCeeec---CCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHh
Q 048774 168 IMGTLPAYQL---KKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLS 244 (519)
Q Consensus 168 ~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~ 244 (519)
.+. ...+.+ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~ 343 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLK 343 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHH
Confidence 543 234554 5899999999999987532 112245788999999999999999999998763 35766655
Q ss_pred cccccC--------cccccchhhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccCCCCCCChHHHH
Q 048774 245 SKIWEL--------PEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDHKEVENPSEDLG 316 (519)
Q Consensus 245 ~~~~~~--------~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~ 316 (519)
...... .....++..++..||+.|+++.|.||+++|+||.+..++.+.+...|.. ..+.+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~------------~~~~~ 411 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM------------ETEEV 411 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC------------CHHHH
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc------------CHHHH
Confidence 432211 1222468899999999999999999999999999999999999988842 23457
Q ss_pred HHHHHHHHHccCcccccC-CCCeEEEeHHHHHHHHHHhc
Q 048774 317 RDFFKELRSRSFFQQSAT-DASRFVMHDLINDLARWAAG 354 (519)
Q Consensus 317 ~~~l~~L~~~sLi~~~~~-~~~~~~~H~lv~~~~~~~~~ 354 (519)
...+++|++++|++.... +..+|.||+++++|++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 889999999999986543 23589999999999998743
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.73 E-value=2.6e-17 Score=161.79 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=177.7
Q ss_pred cccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC------CHHHH
Q 048774 17 AHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF------DVIRL 90 (519)
Q Consensus 17 ~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 90 (519)
..+.|+||+++++.|.+.+.. .++++|+|++|+|||+|++++++ .. ..+|+++.... +...+
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----~~~v~i~G~~G~GKT~Ll~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----YPLTLLLGIRRVGKSSLLRAFLN--ER-----PGILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----CSEEEEECCTTSSHHHHHHHHHH--HS-----SEEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc-----CCeEEEECCCcCCHHHHHHHHHH--Hc-----CcEEEEeecccccccCCCHHHH
Confidence 346799999999998765542 27888999999999999999986 32 26777765432 45555
Q ss_pred HHHHHHHhhc-----------------cCCCCCCCHHHHHHHHHHHhcC-CeEEEEecCccccCc-------cchhhhcc
Q 048774 91 TKTILTSIVT-----------------HQNVDNLNLNKLQEELNKQLSG-KKFLLVLDDVWNRNY-------DDWVDFSR 145 (519)
Q Consensus 91 ~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~-------~~~~~l~~ 145 (519)
...+...+.. .......+.+.+...+...... ++++|||||+++... ..+..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666554432 0000123555666666655543 389999999976432 11222222
Q ss_pred ccCCCCCCcEEEEEecchhHHHhc-----------CC-CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHH
Q 048774 146 PLGASAQGSKIIVSTRNHEVAKIM-----------GT-LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIV 213 (519)
Q Consensus 146 ~l~~~~~~~~ilvTsr~~~~~~~~-----------~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~ 213 (519)
.+.. .++.++++|++........ +. ...+.+.+|+.+|+.+++.......... .. ++.+..++
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~---~~~~~~i~ 232 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VP---ENEIEEAV 232 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CC---HHHHHHHH
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHH
Confidence 1111 2478899998876432211 11 1368899999999999998754322211 11 56788999
Q ss_pred HhhCCCchhHHHHhhhccCCCCHHHHHHHHhcccccCcccccchhhHHHHhhhcC---CcchhhHhhhhccCCCCCccCh
Q 048774 214 TKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWELPEERCRIIPALAVSYYYL---PPTLKQCFAYCSLLPKDYEFEE 290 (519)
Q Consensus 214 ~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L---~~~~~~~ll~la~f~~~~~i~~ 290 (519)
+.|+|+|+++..++..+....+...+...+.+ .....+...+..+ ++..+.++..+|. . ..+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g---~~~~ 298 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE----------VAKGLIMGELEELRRRSPRYVDILRAIAL-G---YNRW 298 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T---CCSH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHH----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh-C---CCCH
Confidence 99999999999988754321122222111100 0111222222333 6788999999987 2 2344
Q ss_pred HHHHHHHHHCCCccCCCCCCChHHHHHHHHHHHHHccCcccccCCCCeEE-EeHHHHHHHH
Q 048774 291 EEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSATDASRFV-MHDLINDLAR 350 (519)
Q Consensus 291 ~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~~~-~H~lv~~~~~ 350 (519)
..+........ . .........+++.|.+.++|.... +.|. .|++++.|.+
T Consensus 299 ~~l~~~~~~~~-~------~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVKG-T------KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTT-C------CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHh-C------CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 44443332211 0 112345678899999999998653 3555 5888888764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=2.4e-16 Score=155.27 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=172.4
Q ss_pred cccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-----CCHHHHH
Q 048774 17 AHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-----FDVIRLT 91 (519)
Q Consensus 17 ~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 91 (519)
..+.|+||+++++.|.+ +.. ++++|+|++|+|||+|++++.+ .... ..+|+++... .+.....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHH
Confidence 44679999999999987 652 6888999999999999999987 3322 3578887642 2344444
Q ss_pred HHHHHHhhc-------------c-----CCC----------CCCCHHHHHHHHHHHhcCCeEEEEecCccccCc---cch
Q 048774 92 KTILTSIVT-------------H-----QNV----------DNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY---DDW 140 (519)
Q Consensus 92 ~~il~~l~~-------------~-----~~~----------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~ 140 (519)
..+...+.. . .+. .....+.+...+.+... ++++|||||+++... ..+
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 444443311 0 000 12344455555544322 499999999976432 122
Q ss_pred hhhccccCCCCCCcEEEEEecchhHHHhc-----------CC-CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHH
Q 048774 141 VDFSRPLGASAQGSKIIVSTRNHEVAKIM-----------GT-LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEI 208 (519)
Q Consensus 141 ~~l~~~l~~~~~~~~ilvTsr~~~~~~~~-----------~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 208 (519)
..+...+....++.++|+|++........ +. ...+.+.+|+.+|+.+++...+..... ....
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~----- 231 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD----- 231 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC-----
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc-----
Confidence 22222221112467899999976532211 11 246889999999999999875421111 1111
Q ss_pred HHHHHHhhCCCchhHHHHhhhccCCCCHHHHHHHHhcccccCcccccchhhHHHHhh---hcCCcchhhHhhhhccCCCC
Q 048774 209 GRKIVTKCDGLPLAAQTLGGLLRGEHDRREWERVLSSKIWELPEERCRIIPALAVSY---YYLPPTLKQCFAYCSLLPKD 285 (519)
Q Consensus 209 ~~~i~~~~~g~PLal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~---~~L~~~~~~~ll~la~f~~~ 285 (519)
...|++.|+|+|+++..++..+....+...|...+-+. ....+...+...+ ..+++..+.++..+|+ ..
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~- 303 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSK-CG- 303 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC-
Confidence 17899999999999999987764322333332211100 0000111122111 1577889999999998 21
Q ss_pred CccChHHHHHHHH-HCCCccCCCCCCChHHHHHHHHHHHHHccCcccccCCCCeEE-EeHHHHHHH
Q 048774 286 YEFEEEEIILLWC-ASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSATDASRFV-MHDLINDLA 349 (519)
Q Consensus 286 ~~i~~~~l~~~w~-~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~~~-~H~lv~~~~ 349 (519)
+...+..... ..|. .........+++.|.+.++|.... +.|. .|++++++.
T Consensus 304 ---~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 ---KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 4444432211 1120 012345678899999999998653 3565 688888764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=2.1e-17 Score=166.34 Aligned_cols=320 Identities=12% Similarity=0.042 Sum_probs=185.1
Q ss_pred ehhhhh-hccccccccceeeeEeecCCC-CCCCC---CCCCeEEE--EecCCchHHHHHHHHhCChhhhc-----CCC-c
Q 048774 9 RSDALE-AAAHDVFPCRKQAFIWAASPE-ETMPE---WPEPMHVF--AGFGGLGKTTLARLAYNDDRVQN-----HFD-L 75 (519)
Q Consensus 9 ~~~~l~-~~~~~~f~gR~~~~~~l~~~~-~~~~~---~~~~~~~I--~G~~G~GKTtLa~~~~~~~~~~~-----~f~-~ 75 (519)
+++.+. ....+.|+||+++++.|...+ ..... ...+.++| +|++|+|||+||+.+++ .... .+. .
T Consensus 11 ~~~~~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~ 88 (412)
T 1w5s_A 11 DRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVK 88 (412)
T ss_dssp CGGGGSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEE
T ss_pred cHhhcCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCcee
Confidence 344443 223467999999988887665 32111 24557778 99999999999999987 3332 122 4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccCc------cchhhhcccc
Q 048774 76 KAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRNY------DDWVDFSRPL 147 (519)
Q Consensus 76 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~------~~~~~l~~~l 147 (519)
++|+++....+...++..++.++.........+.+.....+...+. +++++|||||++.... ..+..+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 168 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH
Confidence 5778876667788899999998866543233445566666666664 6799999999976321 2222222222
Q ss_pred CCC---C--CCcEEEEEecchhHHHhc--------C-CCCeeecCCCChhhHHHHHHHhhhCCCC-CCCCchHHHHHHHH
Q 048774 148 GAS---A--QGSKIIVSTRNHEVAKIM--------G-TLPAYQLKKLSYNDCLAIFAQHSLGTRD-FSSHMSLEEIGRKI 212 (519)
Q Consensus 148 ~~~---~--~~~~ilvTsr~~~~~~~~--------~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~~i 212 (519)
... + .+..+|+||+...+.... . ....+.+.+++.+++.++|...+..... ...+ ++.+..+
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i 245 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELI 245 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHH
Confidence 111 2 355688788755432111 1 1123899999999999999765421111 0111 5678889
Q ss_pred HHhhC------CCchhHHHHhhhcc------CC--CCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhh
Q 048774 213 VTKCD------GLPLAAQTLGGLLR------GE--HDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAY 278 (519)
Q Consensus 213 ~~~~~------g~PLal~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~ 278 (519)
++.++ |+|..+..++.... +. -+...+...+..... ...+...+..|++..+.++..
T Consensus 246 ~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~a 316 (412)
T 1w5s_A 246 SDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRL 316 (412)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHH
Confidence 99999 99975554433211 11 122333333322110 123444567889889999998
Q ss_pred hccCC--CCCccChHHHHHHHHHCC--CccCCCCCCChHHHHHHHHHHHHHccCcccccC---CCCeEEEeHHH
Q 048774 279 CSLLP--KDYEFEEEEIILLWCASG--FLDHKEVENPSEDLGRDFFKELRSRSFFQQSAT---DASRFVMHDLI 345 (519)
Q Consensus 279 la~f~--~~~~i~~~~l~~~w~~~~--~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~---~~~~~~~H~lv 345 (519)
++.+. .+..++...+...+.... ... ...........+++.|.+.++|..... ..++|.+|.+.
T Consensus 317 ia~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 317 IAEATLGGMEWINAGLLRQRYEDASLTMYN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHHHHHSC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 88753 223455544443332111 000 011233456788999999999976532 23445555443
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=4.9e-14 Score=140.37 Aligned_cols=301 Identities=15% Similarity=0.071 Sum_probs=182.2
Q ss_pred ehhhhhhcc-ccccccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcC------CCceEEEE
Q 048774 9 RSDALEAAA-HDVFPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH------FDLKAWTC 80 (519)
Q Consensus 9 ~~~~l~~~~-~~~f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~------f~~~~wv~ 80 (519)
+.+.+...+ .+.|+||+++++.+...+.... .+..+.++|+|++|+|||++|+.+++ ..... -...+|++
T Consensus 8 ~~~~l~~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 8 KRWVLLPDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CHHHHSTTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEE
T ss_pred CHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEE
Confidence 444444333 3779999999999887664321 23566888999999999999999987 33221 12466788
Q ss_pred EcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh--cCCeEEEEecCccccCcc-----chhhhccccCCC--C
Q 048774 81 VSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL--SGKKFLLVLDDVWNRNYD-----DWVDFSRPLGAS--A 151 (519)
Q Consensus 81 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~-----~~~~l~~~l~~~--~ 151 (519)
+....+...+...++.++.................+...+ .+++.+||||+++..... .+..+....... .
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~ 165 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR 165 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC---
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCC
Confidence 7777788888999999886654434445666666776666 356889999999653321 122222222111 3
Q ss_pred CCcEEEEEecchhH--------HHhcCCCCeeecCCCChhhHHHHHHHhhhC--CCCCCCCchHHHHHHHHHHhhC---C
Q 048774 152 QGSKIIVSTRNHEV--------AKIMGTLPAYQLKKLSYNDCLAIFAQHSLG--TRDFSSHMSLEEIGRKIVTKCD---G 218 (519)
Q Consensus 152 ~~~~ilvTsr~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g 218 (519)
.+..+|+||+.... ...+. ...+.+.+++.++..+++...+.. ...... ++....+++.++ |
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHG 240 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSC
T ss_pred ceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhcc
Confidence 46677777776422 11111 136889999999999999887532 111111 344667777777 9
Q ss_pred Cch-hHHHHhhhcc-----C--CCCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhc-cCCCCCccC
Q 048774 219 LPL-AAQTLGGLLR-----G--EHDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCS-LLPKDYEFE 289 (519)
Q Consensus 219 ~PL-al~~~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la-~f~~~~~i~ 289 (519)
.|. ++.++..+.. + .-+.+.+...+... ....+..++..|++..+..+..++ .+.....+.
T Consensus 241 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~ 310 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPAS 310 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Confidence 994 3333322221 1 12344444444332 122456677889988888888777 343222344
Q ss_pred hHHHHHHHH----HCCCccCCCCCCChHHHHHHHHHHHHHccCcccc
Q 048774 290 EEEIILLWC----ASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQS 332 (519)
Q Consensus 290 ~~~l~~~w~----~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~ 332 (519)
...+..... ..| . .......+..+++.|...++++..
T Consensus 311 ~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 311 TGEIYERYKELTSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHHHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 443333221 122 1 122445678899999999999874
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=4.7e-14 Score=140.43 Aligned_cols=314 Identities=13% Similarity=0.071 Sum_probs=181.7
Q ss_pred eehhhhhhcc-ccccccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC---CceEEEEEc
Q 048774 8 VRSDALEAAA-HDVFPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF---DLKAWTCVS 82 (519)
Q Consensus 8 ~~~~~l~~~~-~~~f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~ 82 (519)
++.+.+...+ .+.|+||+++++.|...+.... ....+.++|+|++|+||||||+.+++ .....+ ..++|+++.
T Consensus 8 ~~~~~l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 8 INREYLLPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SCGGGGSSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHH
T ss_pred cchhhCCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECC
Confidence 3444454333 3679999999998877665321 23456888999999999999999997 444332 356777776
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccC----ccchhhhccccCC-CCCCcE
Q 048774 83 DDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRN----YDDWVDFSRPLGA-SAQGSK 155 (519)
Q Consensus 83 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~~~~ 155 (519)
...+...+...++..+.........+.......+...+. +++.+||||+++... ...+..+...+.. ...+..
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~ 165 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKIS 165 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEE
Confidence 666677777777777754433233345555666666654 458999999996532 2223333322211 233566
Q ss_pred EEEEecchhHHHhcC-------CCCeeecCCCChhhHHHHHHHhhhCCC-CCCCCchHHHHHHHHHHhhC---CCchhH-
Q 048774 156 IIVSTRNHEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQHSLGTR-DFSSHMSLEEIGRKIVTKCD---GLPLAA- 223 (519)
Q Consensus 156 ilvTsr~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~PLal- 223 (519)
+|+||+......... ....+.+++++.++..+++...+.... ..... ++....+++.++ |.|..+
T Consensus 166 ~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 166 FIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp EEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred EEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 777877654322211 114789999999999999987653111 11111 556677777777 999843
Q ss_pred HHHhhhcc-----C--CCCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCCC-C-CccChHHHH
Q 048774 224 QTLGGLLR-----G--EHDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPK-D-YEFEEEEII 294 (519)
Q Consensus 224 ~~~~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~-~-~~i~~~~l~ 294 (519)
.++..... + .-+.+.+...+.+. ....+...+..+++.++.++..++.... + ..+....+.
T Consensus 243 ~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~ 312 (386)
T 2qby_A 243 DLLRVSGEIAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVY 312 (386)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHH
Confidence 33322211 1 11333343333321 1234666778898888888887774322 2 123333221
Q ss_pred HHH----HHCCCccCCCCCCChHHHHHHHHHHHHHccCcccccC---CCCeEEEe
Q 048774 295 LLW----CASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSAT---DASRFVMH 342 (519)
Q Consensus 295 ~~w----~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~~---~~~~~~~H 342 (519)
... ...|. ..........+++.|.+.++|+.... ..++|..+
T Consensus 313 ~~~~~~~~~~g~------~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~y~~~ 361 (386)
T 2qby_A 313 ETYLNICKKLGV------EAVTQRRVSDIINELDMVGILTAKVVNRGRYGKTKEI 361 (386)
T ss_dssp HHHHHHHHHHTC------CCCCHHHHHHHHHHHHHHTSEEEEECCCTTSCCCEEE
T ss_pred HHHHHHHHhcCC------CCCCHHHHHHHHHHHHhCCCEEEEeecCCCCCCeEEE
Confidence 211 11121 11233456788999999999976421 23445544
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1.8e-13 Score=136.32 Aligned_cols=310 Identities=13% Similarity=0.039 Sum_probs=186.9
Q ss_pred eehhhhhhc-cccccccceeeeEeecCCCCCC---CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-CceEEEEEc
Q 048774 8 VRSDALEAA-AHDVFPCRKQAFIWAASPEETM---PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVS 82 (519)
Q Consensus 8 ~~~~~l~~~-~~~~f~gR~~~~~~l~~~~~~~---~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~ 82 (519)
++.+.+... ..+.|+||+++++.+...+... ..+..+.++|+|++|+||||+|+.+++ ...... ..++++++.
T Consensus 5 ~~~~~l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 5 VDDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGF 82 (389)
T ss_dssp SCGGGGSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETT
T ss_pred cCHhhcCCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCc
Confidence 445555533 3377999999988887655432 111223788999999999999999987 443331 356777777
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc--CCeEEEEecCccccCccchhhhccccCCCC----CCcEE
Q 048774 83 DDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS--GKKFLLVLDDVWNRNYDDWVDFSRPLGASA----QGSKI 156 (519)
Q Consensus 83 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~----~~~~i 156 (519)
...+...+...++..+.................+...+. +++.+||||+++..+......+...+.... .+..+
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEE
Confidence 777788888888888865543333455566666665553 568899999997765444445544443211 36778
Q ss_pred EEEecchhHHHhcC-------CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhh---------CCCc
Q 048774 157 IVSTRNHEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKC---------DGLP 220 (519)
Q Consensus 157 lvTsr~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~P 220 (519)
|++|+......... ....+.+.+++.++..+++...+....... .-.++....+++.+ +|.|
T Consensus 163 I~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~ 240 (389)
T 1fnn_A 163 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDA 240 (389)
T ss_dssp EEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCH
T ss_pred EEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcH
Confidence 88877654332221 123699999999999999988754211000 11156778899999 7887
Q ss_pred hhHHHHhhhcc------CC--CCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCC---CCCccC
Q 048774 221 LAAQTLGGLLR------GE--HDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLP---KDYEFE 289 (519)
Q Consensus 221 Lal~~~~~~l~------~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~---~~~~i~ 289 (519)
..+..+..... +. -+.+.......... ...+...+..|+++.+.++..++.+. .+..+.
T Consensus 241 r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~ 310 (389)
T 1fnn_A 241 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYIT 310 (389)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCcc
Confidence 55443332211 11 12222222222211 12234456778888888888787654 221445
Q ss_pred hHHHHHHHHHCCCccCCCCCCChHHHHHHHHHHHHHccCccccc
Q 048774 290 EEEIILLWCASGFLDHKEVENPSEDLGRDFFKELRSRSFFQQSA 333 (519)
Q Consensus 290 ~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 333 (519)
...+...+....-. .............++..|.+.++|....
T Consensus 311 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 311 FGDAEESYKIVCEE--YGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 55554443321000 0011223456788999999999998754
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=1.3e-13 Score=137.18 Aligned_cols=289 Identities=13% Similarity=0.054 Sum_probs=176.2
Q ss_pred ccccccceeeeEeecCCCCCC-CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--------CCceEEEEEcCCC-CH
Q 048774 18 HDVFPCRKQAFIWAASPEETM-PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--------FDLKAWTCVSDDF-DV 87 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~-~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--------f~~~~wv~~~~~~-~~ 87 (519)
.+.|+||+++++.+...+... .++..+.++|+|++|+|||++|+.+++ ..... ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 377999999998876544321 123456788999999999999999987 33221 2356778877666 77
Q ss_pred HHHHHHHHHHhhccCC-CCCCCHHHHHHHHHHHhcCCeEEEEecCccccCcc----c-hhhhccccCCCCCCcEEEEEec
Q 048774 88 IRLTKTILTSIVTHQN-VDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYD----D-WVDFSRPLGASAQGSKIIVSTR 161 (519)
Q Consensus 88 ~~~~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~----~-~~~l~~~l~~~~~~~~ilvTsr 161 (519)
..++..++.++..... ............+...+..++.+|||||++..... . +..+.... .+..+|+||+
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~ 172 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEEC
Confidence 8888888888743322 12334456677777778776669999999654321 1 22222222 5788898888
Q ss_pred chhH----HHhc--CCCCeeecCCCChhhHHHHHHHhhhCC-CCCCCCchHHHHHHHHHHhhC---CCch-hHHHHhhhc
Q 048774 162 NHEV----AKIM--GTLPAYQLKKLSYNDCLAIFAQHSLGT-RDFSSHMSLEEIGRKIVTKCD---GLPL-AAQTLGGLL 230 (519)
Q Consensus 162 ~~~~----~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~~~~l 230 (519)
.... .... .....+.+.+++.++..+++...+... .....+ ++....+++.++ |.|. ++.++..+.
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6521 1111 112379999999999999999875321 111112 345667777887 8887 444333222
Q ss_pred ---cC--CCCHHHHHHHHhcccccCcccccchhhHHHHhhhcCCcchhhHhhhhccCCCCCccChHHHHHHHHHCCCccC
Q 048774 231 ---RG--EHDRREWERVLSSKIWELPEERCRIIPALAVSYYYLPPTLKQCFAYCSLLPKDYEFEEEEIILLWCASGFLDH 305 (519)
Q Consensus 231 ---~~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ll~la~f~~~~~i~~~~l~~~w~~~~~~~~ 305 (519)
.+ .-+.+.+...+.+.. ...+..+++.|++..+.++..++....+..+. ......-...| .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-- 315 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-- 315 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C--
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C--
Confidence 11 124455555554321 23466778889988888888887611101111 11111111222 1
Q ss_pred CCCCCChHHHHHHHHHHHHHccCcccc
Q 048774 306 KEVENPSEDLGRDFFKELRSRSFFQQS 332 (519)
Q Consensus 306 ~~~~~~~~~~~~~~l~~L~~~sLi~~~ 332 (519)
..........++..|.+.++|+..
T Consensus 316 ---~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 ---KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 122345678889999999999864
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=1.8e-12 Score=125.89 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=90.9
Q ss_pred CCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCc-ccCcchhcCCC
Q 048774 398 IQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIK-TLPESVSKLYN 476 (519)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~ 476 (519)
+++|+.|.+..+. +. .+|..+..+++|++|++++|.+..+|+.++.+++|++|++++|.+. .+|..++.+++
T Consensus 182 l~~L~~L~L~~n~------l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 182 LVNLQSLRLEWTG------IR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp STTCCEEEEEEEC------CC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred CCCCCEEECcCCC------cC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 5555555544443 22 5566677888888888888888888888888888888888887766 77888888888
Q ss_pred CcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVGI 519 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~~ 519 (519)
|+.|++++|...+.+|..+.++++|++|++++|+.++.+|.++
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999998887788888888889999999999988888888753
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=3.6e-12 Score=118.02 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=114.3
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
+.|+||+++++.|...+.. +...+.++|+|++|+||||+|+.+++ .....+.... ..+.. .... ..+....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~--~~~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~-~~~~~---~~~~-~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITA-TPCGV---CDNC-REIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHH--TCCCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCS-SCCSC---SHHH-HHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCC-CCCcc---cHHH-HHHhccC
Confidence 4589999998888665442 22345788999999999999999987 3332221000 00000 0000 0000000
Q ss_pred ----hccCCCCCCCHHHHHHHHHHHh-----cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HH-
Q 048774 99 ----VTHQNVDNLNLNKLQEELNKQL-----SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AK- 167 (519)
Q Consensus 99 ----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~- 167 (519)
...........+.. ..+...+ .+++.+||+||++......+..+...+.....+..+|+||+.... ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 00000000111111 1222221 346799999999776555555665555544567888888876432 11
Q ss_pred hcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhh
Q 048774 168 IMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGL 229 (519)
Q Consensus 168 ~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 229 (519)
.......+.+.+++.++..+++...+........ ++....|++.|+|+|..+..+...
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1122357899999999999999887654322111 566788999999999988766543
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.31 E-value=2.7e-12 Score=124.56 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=45.8
Q ss_pred hhhhccCCcccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccc
Q 048774 422 LTELFKLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLI 499 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~ 499 (519)
|+.+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|..++.+|..+++++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 334445555555555554443 44445555555555555554443 5555555555555555555545555555555555
Q ss_pred cCCEEEccCC
Q 048774 500 KLHHLNNSNT 509 (519)
Q Consensus 500 ~L~~l~l~~~ 509 (519)
+|+.+++..+
T Consensus 302 ~L~~l~l~~~ 311 (328)
T 4fcg_A 302 ANCIILVPPH 311 (328)
T ss_dssp TTCEEECCGG
T ss_pred CceEEeCCHH
Confidence 5555555544
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=1.3e-11 Score=112.58 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=110.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-C-ceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-D-LKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+||+++++.+...+.. +..+.++|+|++|+|||++|+.+++ ...... . ..+.++.........+.. .+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRH-KIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT---TCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHH-HHH
T ss_pred HHHcCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHH-HHH
Confidence 4588999998888765542 2233488999999999999999987 332222 1 223333333223222221 111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HH-hcCCCCe
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AK-IMGTLPA 174 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~-~~~~~~~ 174 (519)
.+..... ....++.+|||||++.........+...+.....++++|+||+.... .. .......
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 1111100 01256889999999776544444555554444557888888876432 11 1122347
Q ss_pred eecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 175 YQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 175 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
+.+.+++.++..+++...+....... + ++....+++.++|+|..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKI-T---EDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCB-C---HHHHHHHHHHHTTCHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 89999999999999988764322111 1 56678899999999985443
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.6e-11 Score=105.34 Aligned_cols=136 Identities=23% Similarity=0.247 Sum_probs=105.2
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCccccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l 451 (519)
+..++.+.+..+..........+..+++|+.|.+..+. +... ..+..+++|++|++++|.+.. +|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 35566666655544311111234678888888877665 2221 566789999999999999997 67767779
Q ss_pred CcCcEEeccCCCCcccC--cchhcCCCCcEEeccCCCchhHhHH----hhcccccCCEEEccCCCCCCCCCCC
Q 048774 452 RYLRHLNLSRTEIKTLP--ESVSKLYNLHTLLLEDCRRLKKLCA----AMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp--~~~~~l~~L~~l~l~~~~~~~~lp~----~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
++|++|++++|.++.+| ..+..+++|+.|++++| .+..+|. .+..+++|++|++++|. +.++|..
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 99999999999999876 78899999999999998 6666665 68999999999999998 8888864
No 17
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=8.1e-11 Score=105.16 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=54.7
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCccccCCCcCcEEeccCCC-CcccCcc
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVGDLRYLRHLNLSRTE-IKTLPES 470 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~l~l~~~~-i~~lp~~ 470 (519)
+.+..+++|+.|.+..+. +....+..+..+++|++|++++|.+.. .|..+..+++|++|++++|. ++.+| .
T Consensus 82 ~~l~~l~~L~~L~l~~n~------l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~ 154 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKD------VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P 154 (197)
T ss_dssp GGGTTCTTCCEEEEECTT------CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G
T ss_pred hhhhcCCCCCEEEeECCc------cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h
Confidence 344445555555444433 223334444455555555555555552 34445555555555555554 44444 3
Q ss_pred hhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 471 VSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 471 ~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
+..+++|+.|++++| .+..+| .+..+++|++|++++|+
T Consensus 155 l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 155 LKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred hcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 555555555555555 344444 35555555555555554
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=9e-11 Score=107.54 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=94.9
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCcc-cc
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDS-VG 449 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~-~~ 449 (519)
....++.+.+..+....... ..+..+++|+.|.+..+. + ..++.. +..+++|++|++++|.++.+|+. +.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~------l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQ------L-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC------C-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCC------C-CCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 34566677766665544321 345677778887776654 2 233333 34788888888888888877654 57
Q ss_pred CCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCC
Q 048774 450 DLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDS 511 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~ 511 (519)
.+++|++|++++|.++.+|..+..+++|++|++++| .+..+|. .+..+++|+.|++++|+.
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 788888888888888888888888888888888887 5556654 477888888888888873
No 19
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=9.1e-12 Score=133.62 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=47.7
Q ss_pred hhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccc-
Q 048774 421 ILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLI- 499 (519)
Q Consensus 421 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~- 499 (519)
+|..+..+++|++|++++|.++.+|..++.+++|++|+|++|.|+.+|..|+.+++|++|+|++|...+.+|..+..+.
T Consensus 262 lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred cChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 3444445555555555555555555555555555555555555555555555555555555555533334444333322
Q ss_pred cCCEEEccCCCCCCCCCC
Q 048774 500 KLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 500 ~L~~l~l~~~~~l~~lP~ 517 (519)
.+..+++++|...+.+|.
T Consensus 342 ~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp HHHHHHHHHCCCCCCCCC
T ss_pred hhhHHhhccCcccCcCcc
Confidence 112244555554444444
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=4.2e-11 Score=115.36 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCeEEEEEEecCCccc-hhhhhhhcCCCCceecccc-cccCCCCCCCchhhhhhccCCcccEEeecCcccc-ccCccccC
Q 048774 374 RNLCHLSYIRGDCDGV-QRFEKLYDIQHLRTFLPVM-LSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGD 450 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~ 450 (519)
..+..+.+......+. ...+.+..+++|+.|.+.+ +. +....|..+..+++|++|++++|.+. .+|..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 3455555555544431 1124555666666666653 22 33345555666666666666666666 55666666
Q ss_pred CCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccc-cCCEEEccCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLI-KLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 451 l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~-~L~~l~l~~~~~l~~lP 516 (519)
+++|++|++++|.++ .+|..+..+++|++|++++|.....+|..+++++ +|++|++++|...+.+|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 666666666666666 5666666666666666666643335666666666 66666666665333444
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=105.13 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=99.9
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l 451 (519)
...++.+.+..+..........+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|+ .+..+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 34455666666555444322336678888888876665 333334456789999999999999997765 47889
Q ss_pred CcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHh-HHhhcccccCCEEEccCCCC
Q 048774 452 RYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKL-CAAMGNLIKLHHLNNSNTDS 511 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~l-p~~~~~l~~L~~l~l~~~~~ 511 (519)
++|++|++++|.++.+ |..+..+++|++|++++| .+..+ |..+..+++|+.|++++|+.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999999955 677889999999999998 45554 77788999999999999973
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=6.2e-11 Score=100.70 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCceecccccccCCCCCCC-chhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcc-cCcchhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLA-PSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKT-LPESVSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~-lp~~~~~l~~ 476 (519)
++++.+.+.++. +. ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++
T Consensus 17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 445555554443 22 23444445666677777777766655 556666677777777766664 5555555667
Q ss_pred CcEEeccCCCchhHhH--HhhcccccCCEEEccCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLC--AAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 129 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLN 129 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGST
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchH
Confidence 777777766 344433 456666677777777665 55544
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=1e-10 Score=104.51 Aligned_cols=129 Identities=11% Similarity=0.170 Sum_probs=105.3
Q ss_pred CeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCccccCCCc
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVGDLRY 453 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~ 453 (519)
.++.+.+..+... .++.+..+++|+.|.+..+. ...++.+..+++|++|++++|.++. .|..++.+++
T Consensus 45 ~L~~L~l~~n~i~---~l~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 45 SLTYITLANINVT---DLTGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp TCCEEEEESSCCS---CCTTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred CccEEeccCCCcc---ChHHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 3445555554333 34467788899998887664 2334577799999999999999994 6888999999
Q ss_pred CcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 454 LRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 454 L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++|.++ ..|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..+|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH
Confidence 999999999999 678889999999999999996588887 69999999999999998 67665
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.12 E-value=3.2e-10 Score=105.47 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=78.5
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l 451 (519)
+..++.+.+..+....... ..+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|+ .+..+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106 (251)
T ss_dssp CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECCCCcccccChhHhccc
Confidence 3455555555444333321 345566677777665554 222223334466677777777776665543 34566
Q ss_pred CcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCCCC
Q 048774 452 RYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
++|++|++++|.++.+|+. +..+++|+.|++++| .+..+|. .++.+++|++|++++|. +..+|.
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 172 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPH 172 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCH
Confidence 6777777777666655554 456666777777666 4444444 46666667777776666 555543
No 25
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=9.9e-11 Score=102.53 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=80.6
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCC-CCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccc-cCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQ-HLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSV-GDL 451 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~-~~l 451 (519)
..++.+.+..+.... ++.+..+. +|+.|.+..+. +.. .+.+..+++|++|++++|.++.+|+.+ ..+
T Consensus 19 ~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N~------l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDNE------IRK--LDGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSSC------CCE--ECCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCCC------CCc--ccccccCCCCCEEECCCCcccccCcchhhcC
Confidence 344555555443332 23344444 66666665554 222 145567777777777777777776554 677
Q ss_pred CcCcEEeccCCCCcccCc--chhcCCCCcEEeccCCCchhHhHHh----hcccccCCEEEccCCC
Q 048774 452 RYLRHLNLSRTEIKTLPE--SVSKLYNLHTLLLEDCRRLKKLCAA----MGNLIKLHHLNNSNTD 510 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp~--~~~~l~~L~~l~l~~~~~~~~lp~~----~~~l~~L~~l~l~~~~ 510 (519)
++|++|++++|.++.+|. .+..+++|+.|++++| .+..+|.. ++.+++|+.|++++|.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777777777777766 6777777777777777 55566653 6777777777777765
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=1.2e-10 Score=101.08 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=93.7
Q ss_pred cCCCCceecccccccCCCCCCC-chhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcc-cCcchhcC
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLA-PSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKT-LPESVSKL 474 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~-lp~~~~~l 474 (519)
..++++.|.+..+. +. ..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+
T Consensus 22 ~~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 34678888777765 33 35566667999999999999999987 778999999999999999996 77777789
Q ss_pred CCCcEEeccCCCchhHhH--HhhcccccCCEEEccCCCCCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLC--AAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp--~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
++|++|++++| .+..+| ..+..+++|++|++++|. +..+|.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~ 137 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLND 137 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHH
Confidence 99999999998 667665 679999999999999998 677664
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=3.7e-10 Score=103.44 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=94.9
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCcc-hhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPES-VSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~ 476 (519)
++++.|.+..+. +....+..+..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|+. +..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 678888777665 4444455667999999999999999988754 58899999999999999977765 688999
Q ss_pred CcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|+.|++++| .+..+|..+..+++|++|++++|. +..+|.
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~ 152 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPH 152 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCT
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCH
Confidence 999999998 677899999999999999999998 788875
No 28
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.4e-10 Score=112.21 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=110.8
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-CC-ceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FD-LKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+||+++++.|...+.. +..+.++|+|++|+|||++|+.+++ ..... +. .+++++....... ...+.++.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD---GNMPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS---CCCCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHHHCCHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence 4588999998888665442 2223378999999999999999987 33221 11 2233333222221 12222222
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHh-cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HHh-cCCCC
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQL-SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AKI-MGTLP 173 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~-~~~~~ 173 (519)
.+..... .+ .+++.++|+||++.........+...+.....++.+|+||+.... ... .....
T Consensus 95 ~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 95 HFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 2211000 01 345889999999776544455555555444457888888866421 111 12234
Q ss_pred eeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHHhh
Q 048774 174 AYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTLGG 228 (519)
Q Consensus 174 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~~ 228 (519)
.+.+.+++.++..+++...+...+.... ++.+..+++.++|.|. ++..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7899999999999999876543221111 5667889999999994 4555443
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=3.1e-10 Score=103.26 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=95.6
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l 451 (519)
+..++.+.+..+....... ..+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+|+. +..+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp CTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 3456666666555443321 245667788888776665 4444466677888999999999988888765 5778
Q ss_pred CcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCC
Q 048774 452 RYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~ 510 (519)
++|++|++++|.++.+ |..+..+++|+.|++++| .+..+|. .+..+++|++|++++|+
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 8999999999988855 556888889999999988 5555554 47888899999998886
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=2.6e-10 Score=103.68 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=91.2
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCcc-hhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~ 476 (519)
+.++.|.+..+. +....+..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|+. +..+++
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 567777766554 3333333566899999999999999976 77899999999999999999988876 578999
Q ss_pred CcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|+.|++++|......|..+..+++|++|++++|. +..+|.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 145 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAK 145 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECH
Confidence 9999999994444446679999999999999998 777765
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=5.7e-10 Score=106.09 Aligned_cols=97 Identities=27% Similarity=0.343 Sum_probs=70.4
Q ss_pred hhhhhhccCCcccEEeecCccccccC-ccccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHHh-hc
Q 048774 420 SILTELFKLQRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCAA-MG 496 (519)
Q Consensus 420 ~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~~-~~ 496 (519)
.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|+. +..+++|+.|++++| .+..+|.. +.
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 169 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLN 169 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTT
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhc
Confidence 34445557777888888888887765 4577788888888888888766654 467778888888887 56666654 56
Q ss_pred ccccCCEEEccCCCCCCCCCCC
Q 048774 497 NLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 497 ~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
.+++|++|++++|. +..+|..
T Consensus 170 ~l~~L~~L~L~~N~-l~~ip~~ 190 (290)
T 1p9a_G 170 GLENLDTLLLQENS-LYTIPKG 190 (290)
T ss_dssp TCTTCCEEECCSSC-CCCCCTT
T ss_pred CcCCCCEEECCCCc-CCccChh
Confidence 78888888888887 7777764
No 32
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=6.5e-10 Score=100.16 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=101.9
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCcc-ccC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDS-VGD 450 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~ 450 (519)
...++.+.+..+...... ...+..+++|+.|.+..+. +. .++.. +..+++|++|++++|.++.+|+. +..
T Consensus 27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNK------LQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC------CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCc------cC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 445667776665544332 1235678888888877664 32 33444 45899999999999999988765 688
Q ss_pred CCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+++|++|++++|.++.+|+. +..+++|+.|++++| .+..+|.. +..+++|++|++++|...+..|
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999999999999977765 688999999999998 56666654 7889999999999998665555
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.04 E-value=4e-10 Score=107.12 Aligned_cols=88 Identities=28% Similarity=0.358 Sum_probs=41.7
Q ss_pred cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHh-hcccccCCEE
Q 048774 427 KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHL 504 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l 504 (519)
.+++|++|++++|.++.+|..+..+++|++|++++|.++.+|+ .+..+++|+.|++++| .+..+|.. +..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEE
Confidence 4445555555555555554444445555555555555554432 3444555555555554 33333322 3444555555
Q ss_pred EccCCCCCCCCC
Q 048774 505 NNSNTDSLEEMP 516 (519)
Q Consensus 505 ~l~~~~~l~~lP 516 (519)
++++|. +.++|
T Consensus 154 ~L~~N~-l~~l~ 164 (290)
T 1p9a_G 154 SLANNN-LTELP 164 (290)
T ss_dssp ECTTSC-CSCCC
T ss_pred ECCCCc-CCccC
Confidence 555544 44444
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=7.5e-10 Score=104.25 Aligned_cols=83 Identities=30% Similarity=0.434 Sum_probs=37.9
Q ss_pred cCCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHH-hhcccccCCE
Q 048774 427 KLQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHH 503 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~ 503 (519)
.+++|++|++++|.++.+|+. +..+++|++|++++|.++.+|+. +..+++|+.|++++| .+..+|. .++.+++|++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCE
Confidence 445555555555555544332 34445555555555555433332 344445555555544 2223322 2344445555
Q ss_pred EEccCCC
Q 048774 504 LNNSNTD 510 (519)
Q Consensus 504 l~l~~~~ 510 (519)
|++++|.
T Consensus 186 L~L~~N~ 192 (272)
T 3rfs_A 186 LRLYQNQ 192 (272)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 5555444
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.04 E-value=6.2e-10 Score=105.62 Aligned_cols=83 Identities=28% Similarity=0.338 Sum_probs=38.7
Q ss_pred cCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhH-HhhcccccCCE
Q 048774 427 KLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHH 503 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~ 503 (519)
.+++|+.|++++|.++.+|. .+..+++|++|++++|.++ ..|..+..+++|+.|++++| .+..+| ..+..+++|+.
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQY 229 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCE
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCE
Confidence 44455555555554444433 2444455555555555544 22444444555555555554 222232 23445555555
Q ss_pred EEccCCC
Q 048774 504 LNNSNTD 510 (519)
Q Consensus 504 l~l~~~~ 510 (519)
|++++|+
T Consensus 230 L~l~~N~ 236 (285)
T 1ozn_A 230 LRLNDNP 236 (285)
T ss_dssp EECCSSC
T ss_pred EeccCCC
Confidence 5555544
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.04 E-value=2.4e-10 Score=124.01 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=86.1
Q ss_pred hhhhccCCcccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccc
Q 048774 422 LTELFKLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLI 499 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~ 499 (519)
|..+..+++|++|++++|.+. .+|..++.++.|+.|++++|.++ .+|..++.+++|+.|+|++|...+.+|..+.+++
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 344556788999999999998 78999999999999999999999 8999999999999999999977778999999999
Q ss_pred cCCEEEccCCCCCCCCCCC
Q 048774 500 KLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 500 ~L~~l~l~~~~~l~~lP~~ 518 (519)
+|++|++++|+..|.+|..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSEEECCSSEEEEECCSS
T ss_pred CCCEEECcCCcccccCCCc
Confidence 9999999999977888863
No 37
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=2.8e-10 Score=118.29 Aligned_cols=91 Identities=24% Similarity=0.283 Sum_probs=80.2
Q ss_pred hhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHh--HHhhcccccC
Q 048774 424 ELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKL--CAAMGNLIKL 501 (519)
Q Consensus 424 ~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~l--p~~~~~l~~L 501 (519)
.+..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|+|++| .+..+ |..++.+++|
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCC
Confidence 377899999999999999999999999999999999999999888 8999999999999998 55555 8889999999
Q ss_pred CEEEccCCCCCCCCCC
Q 048774 502 HHLNNSNTDSLEEMPV 517 (519)
Q Consensus 502 ~~l~l~~~~~l~~lP~ 517 (519)
+.|++++|+ +..+|.
T Consensus 536 ~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CEEECTTSG-GGGSSS
T ss_pred CEEEecCCc-CCCCcc
Confidence 999999998 666654
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.03 E-value=8.2e-10 Score=104.01 Aligned_cols=117 Identities=25% Similarity=0.377 Sum_probs=96.3
Q ss_pred hhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCc
Q 048774 391 RFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPE 469 (519)
Q Consensus 391 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~ 469 (519)
.++.+..+++|+.|.+.++. +.. ++.+..+++|++|++++|.++.+|+. +..+++|++|++++|.++.+|+
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~------l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNK------LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSC------CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cccccccCCCCcEEECCCCC------CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 44567788999999887765 222 34677999999999999999987654 6899999999999999997766
Q ss_pred c-hhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCCCC
Q 048774 470 S-VSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 470 ~-~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
. +..+++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.
T Consensus 127 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 174 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE 174 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH
Confidence 5 789999999999999 56666554 6899999999999998 777765
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.03 E-value=6e-10 Score=109.54 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=103.3
Q ss_pred cCCCeEEEEEEecCCccchhhhhhh-cCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-ccc
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLY-DIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVG 449 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~ 449 (519)
.+..++.+.+..+....... ..+. .+++|+.|.+..+. +....+..+..+++|+.|++++|.++.+|+ .+.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 109 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH------LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS 109 (361)
T ss_dssp CCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc------CCccChhhccCCCCCCEEECCCCcCCcCCHHHhC
Confidence 34556667766665544432 2233 78888888876665 433334456789999999999999998765 578
Q ss_pred CCCcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHHhh----cccccCCEEEccCCCCCCCCC
Q 048774 450 DLRYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCAAM----GNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~~~----~~l~~L~~l~l~~~~~l~~lP 516 (519)
.+++|++|++++|.|+.+ |..+..+++|+.|+|++| .+..+|..+ ..+++|+.|++++|. +..+|
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~ 179 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP 179 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCC
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccC
Confidence 899999999999999955 668899999999999998 677787664 578999999999998 77877
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.02 E-value=3e-10 Score=109.38 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=42.8
Q ss_pred hhhhccCCcccEEeecCcccc-ccCccccCCC-cCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhccc
Q 048774 422 LTELFKLQRLRIFSLRGYHIS-ELPDSVGDLR-YLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNL 498 (519)
Q Consensus 422 ~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l 498 (519)
|..+..+++|++|++++|.+. .+|..++.++ .|++|++++|.++ ..|..+..+. |+.|++++|......|..+..+
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC
Confidence 333444444444444444444 4444444444 4444444444444 4444444443 5555555543233344455566
Q ss_pred ccCCEEEccCCC
Q 048774 499 IKLHHLNNSNTD 510 (519)
Q Consensus 499 ~~L~~l~l~~~~ 510 (519)
++|+.|++++|.
T Consensus 221 ~~L~~L~L~~N~ 232 (313)
T 1ogq_A 221 KNTQKIHLAKNS 232 (313)
T ss_dssp SCCSEEECCSSE
T ss_pred CCCCEEECCCCc
Confidence 666666666665
No 41
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.01 E-value=6.4e-10 Score=101.13 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCcc-hhcCCC
Q 048774 400 HLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPES-VSKLYN 476 (519)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~ 476 (519)
.++.|.+..+. +....+.. +..+++|++|++++|.++.+++ .+..+++|++|++++|.++.+|+. +..+++
T Consensus 33 ~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45566555544 33322333 5589999999999999997765 789999999999999999977664 889999
Q ss_pred CcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCC-CC
Q 048774 477 LHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEM-PV 517 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~l-P~ 517 (519)
|++|++++|......|..+..+++|++|++++|. +..+ |.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 147 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPG 147 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTT
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHH
Confidence 9999999994444446779999999999999998 6666 44
No 42
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=4.6e-10 Score=98.23 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=93.2
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCC-cccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcch
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQ-RLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESV 471 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~ 471 (519)
+.+..+.+++.|.+.++. +. .+ +.+..+. +|++|++++|.++.+ +.+..+++|++|++++|.++.+|+.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 344567788888777665 22 22 3455555 999999999999987 67899999999999999999888766
Q ss_pred -hcCCCCcEEeccCCCchhHhHH--hhcccccCCEEEccCCCCCCCCCC
Q 048774 472 -SKLYNLHTLLLEDCRRLKKLCA--AMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 472 -~~l~~L~~l~l~~~~~~~~lp~--~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 89999999999998 6777886 78899999999999998 677765
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.00 E-value=1.4e-09 Score=102.37 Aligned_cols=88 Identities=30% Similarity=0.448 Sum_probs=42.7
Q ss_pred cCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHH-hhcccccCCE
Q 048774 427 KLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHH 503 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~ 503 (519)
.+++|++|++++|.++.+|+ .+..+++|++|++++|.++.+|.. +..+++|+.|++++| .+..+|. .+..+++|++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCE
Confidence 45555555555555554432 234455555555555555544433 444555555555554 3333332 2445555555
Q ss_pred EEccCCCCCCCCC
Q 048774 504 LNNSNTDSLEEMP 516 (519)
Q Consensus 504 l~l~~~~~l~~lP 516 (519)
|++++|. +..+|
T Consensus 186 L~L~~N~-l~~~~ 197 (270)
T 2o6q_A 186 LKLDNNQ-LKRVP 197 (270)
T ss_dssp EECCSSC-CSCCC
T ss_pred EECCCCc-CCcCC
Confidence 5555554 44444
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.00 E-value=8.2e-10 Score=117.05 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=85.2
Q ss_pred hhhhhccCCcccEEeecCccccc------------------cCcccc--CCCcCcEEeccCCCCc-ccCcchhcCCCCcE
Q 048774 421 ILTELFKLQRLRIFSLRGYHISE------------------LPDSVG--DLRYLRHLNLSRTEIK-TLPESVSKLYNLHT 479 (519)
Q Consensus 421 ~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~~~--~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~ 479 (519)
+|..+.++++|++|++++|.++. +|..++ .+++|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 67788899999999999999997 999998 9999999999999877 89999999999999
Q ss_pred EeccCCC-chh-HhHHhhccc------ccCCEEEccCCCCCCCCCC
Q 048774 480 LLLEDCR-RLK-KLCAAMGNL------IKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 480 l~l~~~~-~~~-~lp~~~~~l------~~L~~l~l~~~~~l~~lP~ 517 (519)
|++++|. ..+ .+|..++++ ++|++|++++|. +..+|.
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~ 322 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPV 322 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCc
Confidence 9999996 444 689888887 899999999998 668886
No 45
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=4.6e-10 Score=97.94 Aligned_cols=93 Identities=24% Similarity=0.306 Sum_probs=75.5
Q ss_pred hhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHHh-hc
Q 048774 420 SILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCAA-MG 496 (519)
Q Consensus 420 ~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~~-~~ 496 (519)
.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+++|++|+|++| .+..+|.. +.
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 3444443 7889999999999977 55788899999999999999988876 578999999999998 66677765 88
Q ss_pred ccccCCEEEccCCCCCCCCC
Q 048774 497 NLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 497 ~l~~L~~l~l~~~~~l~~lP 516 (519)
.+++|++|++++|+ +...|
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTB
T ss_pred cccCCCEEEeCCCC-ccccc
Confidence 89999999999998 55544
No 46
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.99 E-value=2.7e-10 Score=96.75 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=95.3
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~ 452 (519)
..++.+.+..+..........+..+++|+.|.+..+. +... ..+..+++|++|++++|.+.. +|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG------LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC------CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC------CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4445555544433311112344678888888877664 2222 567799999999999999997 777777799
Q ss_pred cCcEEeccCCCCcccC--cchhcCCCCcEEeccCCCchhHhHH----hhcccccCCEEEccC
Q 048774 453 YLRHLNLSRTEIKTLP--ESVSKLYNLHTLLLEDCRRLKKLCA----AMGNLIKLHHLNNSN 508 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp--~~~~~l~~L~~l~l~~~~~~~~lp~----~~~~l~~L~~l~l~~ 508 (519)
+|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999765 88999999999999998 6666654 688999999999864
No 47
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=2.8e-10 Score=122.05 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=99.4
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSK 473 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~ 473 (519)
.+..+..|+.|.+..+. + ..+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++|.|+.+|..++.
T Consensus 219 ~~~~l~~L~~L~Ls~n~------l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ------I-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSC------C-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECCCCC------C-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 45567888888776665 3 3567778899999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 474 LYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++|+|++| .+..+|..|+++++|++|+|++|...+.+|
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 999999999998 678999999999999999999999544444
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=1.2e-09 Score=101.56 Aligned_cols=130 Identities=24% Similarity=0.279 Sum_probs=100.5
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~ 452 (519)
..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|+. +..++
T Consensus 59 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc------ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 45556665555444332 1336778889988877765 3332233455899999999999999988765 58899
Q ss_pred cCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCC
Q 048774 453 YLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDS 511 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~ 511 (519)
+|++|++++|.++.+|+ .+..+++|++|++++| .+..+|. .+..+++|++|++++|+.
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99999999999998877 6889999999999998 5556554 688999999999999984
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.98 E-value=9.2e-10 Score=103.90 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccC-ccccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELP-DSVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l 451 (519)
+..++.+.+..+....... ..+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.++ ..+..+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CTTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCccEEECCCCcccccCH-hHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 3445555554443333221 244556666666655543 22222223446666666666666666443 445666
Q ss_pred CcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhH--hHHhhcccccCCEEEccCCCCCCCC
Q 048774 452 RYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKK--LCAAMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~--lp~~~~~l~~L~~l~l~~~~~l~~l 515 (519)
++|++|++++|.+..++. .+..+++|++|++++| .+.. +|..+.++++|++|++++|. +..+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~ 164 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcC
Confidence 666666666666664443 4566666666666665 3332 45556666666666666665 4443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.98 E-value=1.1e-09 Score=111.11 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=100.7
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~ 450 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|+. +..
T Consensus 73 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 4456677776666554432 2456778888888777665 4444445566888999999999988877654 778
Q ss_pred CCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+++|++|++++|.++.+|. .+.++++|+.|++++|..+..+|. .+..+++|++|++++|. +..+|.
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~ 213 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN 213 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc
Confidence 8899999999998886665 677888888888888767777765 37777888888888776 666653
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.98 E-value=1.7e-09 Score=101.72 Aligned_cols=136 Identities=21% Similarity=0.269 Sum_probs=104.7
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhh-ccCCcccEEeecCccccccCc-ccc
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTEL-FKLQRLRIFSLRGYHISELPD-SVG 449 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~lp~-~~~ 449 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. + ..++..+ ..+++|++|++++|.+..+|. .+.
T Consensus 35 ~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~------l-~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK------L-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC------C-SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc------c-CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 3455667776665544332 1356778889988876654 2 2345554 489999999999999998875 468
Q ss_pred CCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCCCC
Q 048774 450 DLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
.+++|++|++++|.++.+|+ .+..+++|++|++++| .+..+|.. +..+++|+.|++++|. +..+|.
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 174 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE 174 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh
Confidence 89999999999999996665 5789999999999998 66667654 7899999999999998 777765
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=8.8e-10 Score=105.72 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=66.3
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc--cCccccCCCcCcEEeccCCCCccc-Ccc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE--LPDSVGDLRYLRHLNLSRTEIKTL-PES 470 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~l~l~~~~i~~l-p~~ 470 (519)
.+..+++|+.|.+..+. +....+..+..+++|+.|++++|.+.. +|..+..+++|++|++++|.++.+ |..
T Consensus 121 ~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTH------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp TTTTCTTCCEEECTTSC------CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhhhccCCCEEECCCCc------CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 45556666666655543 223333344566677777777776653 566666667777777777766644 455
Q ss_pred hhcCCCCcEEeccCCCchhHhH-HhhcccccCCEEEccCCC
Q 048774 471 VSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 471 ~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~ 510 (519)
+..+++|+.|++++| .+..+| ..+..+++|++|++++|.
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCC
Confidence 666667777777766 333333 345666677777777666
No 53
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.97 E-value=8.9e-10 Score=97.86 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCc-chhcCCC
Q 048774 400 HLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYN 476 (519)
Q Consensus 400 ~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~ 476 (519)
+++.|.+..+. +....+.. +..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|+ .+..+++
T Consensus 30 ~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCc------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 56666665554 22222222 56899999999999999976 6788999999999999999996655 4888999
Q ss_pred CcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~ 513 (519)
|++|++++|......|..+..+++|++|++++|+...
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9999999985444557778899999999999998443
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.97 E-value=1.1e-09 Score=115.65 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=105.7
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~ 450 (519)
.+..++.+.+..+....... ..+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+ |..++.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 44667777776665544432 356788888888877765 4444455667899999999999999876 778899
Q ss_pred CCcCcEEeccCCCCcccC-cchhcCCCCcEEeccCCCchh-HhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLP-ESVSKLYNLHTLLLEDCRRLK-KLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp-~~~~~l~~L~~l~l~~~~~~~-~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+++|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|. +..+|
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~ 169 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTIT 169 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEEC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecC
Confidence 999999999999998666 678899999999999984433 578889999999999999987 55543
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=1.6e-09 Score=109.67 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=91.4
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~ 450 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|+ .+..
T Consensus 62 ~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSC------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCc------CCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 3455566666555444433 2456677777777776654 333334455678888888888888887765 5777
Q ss_pred CCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+++|++|++++|.++.+|. .+..+++|+.|++++|..+..+|. .+.++++|++|++++|. +..+|.
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~ 202 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN 202 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc
Confidence 8888888888888876554 566777777777777656666654 36667777777777765 556653
No 56
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.97 E-value=1.9e-09 Score=97.12 Aligned_cols=111 Identities=26% Similarity=0.344 Sum_probs=90.0
Q ss_pred CCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCcc-hhcC
Q 048774 398 IQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPES-VSKL 474 (519)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~~-~~~l 474 (519)
.++++.|.+..+. +. ..++. +..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|+. +..+
T Consensus 27 ~~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNS------LK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEcCCCc------cC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 4567777776664 33 23343 45899999999999999988765 57899999999999999977765 6899
Q ss_pred CCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
++|++|++++| .+..+|.. +.++++|++|++++|. +..+|.
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 141 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD 141 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCH
Confidence 99999999998 56666654 7899999999999998 777765
No 57
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1e-09 Score=119.15 Aligned_cols=136 Identities=15% Similarity=0.245 Sum_probs=107.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCc-hhhhhhccCC-------cccEEeecCccccccC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAP-SILTELFKLQ-------RLRIFSLRGYHISELP 445 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~lp 445 (519)
..++.+.+..+...+.. ...+..+++|+.|.+..+.. +.. .+|..+..+. +|+.|++++|.+..+|
T Consensus 491 ~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp TTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred CCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCC-----cccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 45677777766543332 25677888898888766631 334 5777666655 9999999999999898
Q ss_pred c--cccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhccccc-CCEEEccCCCCCCCCCCC
Q 048774 446 D--SVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIK-LHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 446 ~--~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~-L~~l~l~~~~~l~~lP~~ 518 (519)
. .++.+++|+.|++++|.++.+| .++.+++|+.|++++| .+..+|..+.++++ |+.|++++|. +.++|..
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~ 637 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI 637 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC
T ss_pred ChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchh
Confidence 8 8999999999999999999888 8889999999999998 45588888999998 9999999988 6788864
No 58
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.96 E-value=5.3e-10 Score=108.23 Aligned_cols=180 Identities=14% Similarity=0.000 Sum_probs=103.0
Q ss_pred cccccceeeeEeecCCCCCCC--CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMP--EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~--~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+|++..+..+...+.... ......++|+|++|+|||++|+.+++ .... ..+++++........+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l------ 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDL------ 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHH------
Confidence 558899988777654432111 12346778999999999999999987 3322 2334443332222111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCC------------------CCCcEEEE
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS------------------AQGSKIIV 158 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~~~~ilv 158 (519)
...+... ..++.+|+||+++.........+...+... .++..+|.
T Consensus 81 ----------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 ----------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111110 134668899999665432222222211110 12455666
Q ss_pred Eecchh-HHHhc-CC-CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHhhhc
Q 048774 159 STRNHE-VAKIM-GT-LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLGGLL 230 (519)
Q Consensus 159 Tsr~~~-~~~~~-~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~l 230 (519)
+|.... +...+ .. ...+.+.+++.+|...++...+....... + ++....+++.+.|+|..+..+...+
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-T---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-C---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-C---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 665432 11111 11 24789999999999999988765433211 1 5678889999999998877655443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.96 E-value=1.6e-09 Score=102.75 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=73.0
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCcc-h
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPES-V 471 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~~-~ 471 (519)
.+..+++|+.|.+..+.. +....+..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+|.. +
T Consensus 75 ~~~~l~~L~~L~l~~n~~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQ-----LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp TTTTCTTCCEEECCSCTT-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hcCCccCCCEEeCCCCCC-----ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 344555555555544420 1111234455677777777777777755 44567777777887777777766543 6
Q ss_pred hcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~l 515 (519)
..+++|+.|++++| .+..+|. .+..+++|++|++++|. +..+
T Consensus 150 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 192 (285)
T 1ozn_A 150 RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHV 192 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEE
T ss_pred ccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-cccc
Confidence 67777888888777 4555554 37777788888888776 4443
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.96 E-value=2.2e-09 Score=103.04 Aligned_cols=111 Identities=18% Similarity=0.334 Sum_probs=71.2
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchh
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVS 472 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~ 472 (519)
+.+..+++|+.|.+..+. +.. .+.+..+++|+.|++++|.+..+|+ +..+++|++|++++|.++.+|+ +.
T Consensus 101 ~~~~~l~~L~~L~l~~n~------l~~--~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQ------ITD--VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp GGGTTCTTCCEEECTTSC------CCC--CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred hhhcCCCCCCEEECCCCC------CCC--chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hc
Confidence 445556666666555443 111 1235567777777777777776655 6677777777777777776655 67
Q ss_pred cCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 473 KLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
.+++|+.|++++| .+..+|. +..+++|++|++++|. +..+|
T Consensus 171 ~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 171 NLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp TCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCG
T ss_pred CCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCccc
Confidence 7777777777776 4555554 6677777777777776 55543
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=2.6e-09 Score=101.57 Aligned_cols=82 Identities=30% Similarity=0.433 Sum_probs=39.3
Q ss_pred hccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEE
Q 048774 425 LFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHL 504 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l 504 (519)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+ +.+..+++|+.|++++| .+..++. +..+++|++|
T Consensus 108 l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L 183 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNL 183 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEE
T ss_pred hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEE
Confidence 445555555555555554442 344455555555555554443 33444555555555544 3333332 4445555555
Q ss_pred EccCCC
Q 048774 505 NNSNTD 510 (519)
Q Consensus 505 ~l~~~~ 510 (519)
++++|.
T Consensus 184 ~L~~N~ 189 (291)
T 1h6t_A 184 YLSKNH 189 (291)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 555544
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.95 E-value=8.8e-10 Score=119.53 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=90.3
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccc-ccCccccCCCcCcEEeccCCCCc-ccCcch
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGDLRYLRHLNLSRTEIK-TLPESV 471 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~l~l~~~~i~-~lp~~~ 471 (519)
.+..+++|+.|.+..+. +....|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+
T Consensus 437 ~l~~l~~L~~L~L~~n~------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNM------LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp GGGGCTTCCEEECCSSC------CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred HHhcCCCCCEEECCCCc------ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 34445555555554443 44456667778888888888888887 66777888888888888888888 788888
Q ss_pred hcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
+.+++|++|++++|...+.+|..++++++|+.|++++|+..+.+|..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 88888888888888666678888888888888888888866777753
No 63
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=1.9e-09 Score=114.19 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=92.3
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhcc--------CCcccEEeecCccccccCcccc--CCCcCcEEeccCCCCcc
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELFK--------LQRLRIFSLRGYHISELPDSVG--DLRYLRHLNLSRTEIKT 466 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~lp~~~~--~l~~L~~l~l~~~~i~~ 466 (519)
.+++|+.|.+..+. +. .+|..++. +++|+.|++++|.++.+|..+. .+++|+.|++++|.++.
T Consensus 455 ~l~~L~~L~Ls~N~------l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 455 TGSPLSSINLMGNM------LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp TTCCCSEEECCSSC------CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCEEECCCCC------CC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC
Confidence 46677777665554 22 44444432 3389999999999999998887 89999999999999999
Q ss_pred cCcchhcCCCCcEEecc------CCCchhHhHHhhcccccCCEEEccCCCCCCCCCCCC
Q 048774 467 LPESVSKLYNLHTLLLE------DCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVGI 519 (519)
Q Consensus 467 lp~~~~~l~~L~~l~l~------~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~~ 519 (519)
+|..+..+++|+.|+++ +|...+.+|..+.++++|+.|++++|. ++++|..+
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~ 585 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI 585 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhH
Confidence 99999999999999995 454567789899999999999999998 69998753
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.95 E-value=1.2e-09 Score=115.81 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=107.3
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~ 450 (519)
.+..++.+.+..+....... ..+..+++|+.|.+..+. +..-.+..+.++++|++|++++|.++.+|+ .+..
T Consensus 50 lp~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCcCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 45677888877766555432 457788999999887765 333223345689999999999999998875 5789
Q ss_pred CCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchh-HhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLK-KLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~-~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+++|++|++++|.++.+|+ .++++++|++|++++|.... .+|..++.+++|++|++++|. +..++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 189 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 189 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccc
Confidence 9999999999999997776 58999999999999984322 357788999999999999998 65543
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=2.4e-09 Score=116.16 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=92.4
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhc--------cCCcccEEeecCccccccCcccc--CCCcCcEEeccCCCCcc
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELF--------KLQRLRIFSLRGYHISELPDSVG--DLRYLRHLNLSRTEIKT 466 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--------~l~~L~~L~l~~~~~~~lp~~~~--~l~~L~~l~l~~~~i~~ 466 (519)
.+++|+.|.+..+. +. .+|..++ ++++|+.|++++|.+..+|..+. .+++|+.|++++|.++.
T Consensus 695 ~l~~L~~L~Ls~N~------L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 695 TGSPISTIILSNNL------MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp TTCCCSEEECCSCC------CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCEEECCCCc------CC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc
Confidence 46667766665553 22 4444443 23489999999999999998887 89999999999999999
Q ss_pred cCcchhcCCCCcEEeccC------CCchhHhHHhhcccccCCEEEccCCCCCCCCCCCC
Q 048774 467 LPESVSKLYNLHTLLLED------CRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVGI 519 (519)
Q Consensus 467 lp~~~~~l~~L~~l~l~~------~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~~ 519 (519)
+|..+..+++|+.|++++ |.....+|..+.++++|+.|++++|. ++.+|..+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh
Confidence 999999999999999976 54466788889999999999999998 69999753
No 66
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.8e-09 Score=95.88 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=84.7
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccC-ccccCCCcCcEEeccCCCCcccCc-chhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~ 476 (519)
++++.|.+..+. + ..+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+|+ .+..+++
T Consensus 31 ~~l~~L~L~~n~------i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQ------F-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSC------C-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCCEEECCCCc------C-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 567777666554 2 245567779999999999999999775 468899999999999999996665 6889999
Q ss_pred CcEEeccCCCchhHhHH-hhcccccCCEEEccCCC
Q 048774 477 LHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~ 510 (519)
|++|+|++| .+..+|. .+..+++|+.|++++|+
T Consensus 104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 999999998 6667765 48889999999999987
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.94 E-value=8.2e-10 Score=116.60 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=82.5
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc--cCccccCCCcCcEEeccCCCCcc-cCcc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE--LPDSVGDLRYLRHLNLSRTEIKT-LPES 470 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~l~l~~~~i~~-lp~~ 470 (519)
.+..+++|+.|.+..+. +....|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++. .|..
T Consensus 419 ~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN------TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTCTTCCEEECTTSC------CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhhccccCCEEECcCCC------CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 45566667776665554 334445556677788888888887774 56677778888888888887773 4556
Q ss_pred hhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 471 VSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 471 ~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
+..+++|+.|++++|......|..+.++++|+.|++++|+ +..+|..
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 7777888888888874444456677778888888888877 6666653
No 68
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=95.64 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~ 452 (519)
..++.+.+..+...... ..+..+++|+.|.+..+. +....+..+..+++|+.|++++|.++.+|+ .+..++
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNR------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCc------CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence 34444444444333222 344455555555554443 222222234455666666666666665433 455566
Q ss_pred cCcEEeccCCCCcccCcc-hhcCCCCcEEeccCC
Q 048774 453 YLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDC 485 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~ 485 (519)
+|++|++++|.++.+|+. +..+++|+.|++++|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666666666666655543 455566666666655
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.93 E-value=8.9e-10 Score=108.00 Aligned_cols=130 Identities=21% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~ 452 (519)
..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+|.. +..++
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 35555555544433322 1235666777777665554 3333334455677777777777777766654 66677
Q ss_pred cCcEEeccCCCCcccCc--chhcCCCCcEEeccCCCchhHh-HHhhcccccCCEEEccCCC
Q 048774 453 YLRHLNLSRTEIKTLPE--SVSKLYNLHTLLLEDCRRLKKL-CAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~--~~~~l~~L~~l~l~~~~~~~~l-p~~~~~l~~L~~l~l~~~~ 510 (519)
+|++|++++|.++.+|. .+..+++|++|++++|..+..+ |..+.++++|++|++++|.
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 77777777777776665 5666777777777776444444 3456666777777777666
No 70
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=1.6e-09 Score=94.07 Aligned_cols=81 Identities=30% Similarity=0.422 Sum_probs=65.8
Q ss_pred CcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEE
Q 048774 429 QRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLN 505 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~ 505 (519)
++|++|++++|.++.+ |..+..+++|++|++++|.|+.+|+. +..+++|++|+|++| .+..+|. .+.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 6788888888888877 55678888899999988888877765 478888899999888 5666665 478888889999
Q ss_pred ccCCC
Q 048774 506 NSNTD 510 (519)
Q Consensus 506 l~~~~ 510 (519)
+++|+
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 88887
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.91 E-value=3.6e-09 Score=105.21 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccC-ccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELP-DSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~ 452 (519)
..++.+.+.......... ..+..+++|+.|.+.++. +....+..+..+++|++|++++|.+..+| ..+..++
T Consensus 45 ~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCceEEEecCCchhhCCh-hHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 344555555443333221 225667788888776654 33333345667888888888888888664 4467888
Q ss_pred cCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~l 515 (519)
+|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|++|++++|. +..+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 180 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV 180 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcc
Confidence 888888888888877776 4778888888888874333334557788888888888876 5544
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.90 E-value=3e-09 Score=108.73 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=78.3
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~ 450 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+|.. +..
T Consensus 30 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp CCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 3445556665555444432 1345667777777665554 3333345555677777777777777766543 466
Q ss_pred CCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 451 l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+++|++|++++|.++ ..|..+..+++|+.|++++|......|..+.++++|+.|++++|. +..+|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 168 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIP 168 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCC
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccC
Confidence 677777777776666 334456666666666666653222233345555666666666554 44443
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=2.2e-09 Score=98.91 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=41.3
Q ss_pred cCCcccEEeecCccccccCccccCCCcCc---EEeccCC-CCcccCcc-hhcCCCCc-EEeccCCCchhHhHHhhccccc
Q 048774 427 KLQRLRIFSLRGYHISELPDSVGDLRYLR---HLNLSRT-EIKTLPES-VSKLYNLH-TLLLEDCRRLKKLCAAMGNLIK 500 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~l~l~~~-~i~~lp~~-~~~l~~L~-~l~l~~~~~~~~lp~~~~~l~~ 500 (519)
.+++|++|++++|.++.+|. +..+++|+ +|++++| .++.+|+. +..+++|+ .|++++| .+..+|......++
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTK 180 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCE
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCC
Confidence 44455555555554444443 44444444 5555555 45444432 44455555 5555554 33344443333345
Q ss_pred CCEEEccCCCCCCCCC
Q 048774 501 LHHLNNSNTDSLEEMP 516 (519)
Q Consensus 501 L~~l~l~~~~~l~~lP 516 (519)
|+.|++++|..+..+|
T Consensus 181 L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVID 196 (239)
T ss_dssp EEEEECTTCTTCCEEC
T ss_pred CCEEEcCCCCCcccCC
Confidence 5555555552244443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=3.1e-09 Score=101.95 Aligned_cols=127 Identities=17% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+.... ++.+..+++|+.|.+..+. +.. . +.+..+++|+.|++++|.+..+|+ +..+++
T Consensus 107 ~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l~~n~------l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 174 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD---VTPLAGLSNLQVLYLDLNQ------ITN-I-SPLAGLTNLQYLSIGNAQVSDLTP-LANLSK 174 (308)
T ss_dssp TTCCEEECTTSCCCC---CGGGTTCTTCCEEECCSSC------CCC-C-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred CCCCEEECCCCCCCC---chhhcCCCCCCEEECCCCc------cCc-C-ccccCCCCccEEEccCCcCCCChh-hcCCCC
Confidence 345555554443333 3456677777777766654 211 1 226678888888888888887766 778888
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|+.|++++|.++.+|+ +..+++|+.|++++| .+..+|+ +..+++|+.|++++|. +...|
T Consensus 175 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred CCEEECCCCccCcChh-hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 8888888888887665 777888888888887 5555553 7788888888888877 55544
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.89 E-value=2.8e-09 Score=111.53 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=93.1
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccC-ccccC
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELP-DSVGD 450 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~ 450 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.++.+| ..+..
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 3456667766655544433 1356678888888776664 33333344567888888888888887664 56777
Q ss_pred CCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchh-HhHHhhcccccCCEEEccCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLK-KLCAAMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~-~lp~~~~~l~~L~~l~l~~~~~l~~l 515 (519)
+++|++|++++|.++.+|. .++.+++|++|++++|.... .+|..++++++|++|++++|. +..+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~ 164 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEE
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-ccee
Confidence 8888888888888876665 57778888888888873333 367778888888888888776 4444
No 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=3.3e-09 Score=92.79 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCcc-hhcC
Q 048774 398 IQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPES-VSKL 474 (519)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~~-~~~l 474 (519)
.++++.|.+.++. +. ..++. +..+++|++|++++|.++.+|+. +..+++|++|++++|.++.+|+. +..+
T Consensus 27 ~~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK------LQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCc------cc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 3567777766654 22 23333 45889999999999999988754 58899999999999999977765 6789
Q ss_pred CCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~ 513 (519)
++|++|++++| .+..+|.. +..+++|++|++++|+..+
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999998 66677765 5789999999999998443
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.88 E-value=5e-09 Score=100.99 Aligned_cols=128 Identities=11% Similarity=0.061 Sum_probs=94.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
..++.+.+..+....... ..+..+++|+.|.+..+. +....+..+. .+++|++|++++|.++.+|. ...++
T Consensus 120 ~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~ 191 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNE------IDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFA 191 (317)
T ss_dssp SSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSC------CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCT
T ss_pred CCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCC------CCcccHHHHhhccCcCCEEECCCCcCccccc-ccccc
Confidence 345666655554444321 244567777777776654 4444455554 68889999999998887754 34588
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
+|++|++++|.++.+|+.+..+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 899999999999988888888899999999988 666788888888899999999887
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.88 E-value=1.8e-09 Score=103.78 Aligned_cols=132 Identities=21% Similarity=0.237 Sum_probs=96.8
Q ss_pred CCCeEEEEEEecCCccchhhhhh--hcCCCCceecccccccCCCCCCCchhhhhhccC-----CcccEEeecCccccccC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKL--YDIQHLRTFLPVMLSNSLDGYLAPSILTELFKL-----QRLRIFSLRGYHISELP 445 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp 445 (519)
...++.+.+..+...+... ..+ ..+++|+.|.+..+. +... |..+..+ ++|++|++++|.+..+|
T Consensus 94 l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~Ls~N~------l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAP-PPLLEATGPDLNILNLRNVS------WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCC-CCSSSCCSCCCSEEEEESCB------CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred cCCccEEEccCCcccchhH-HHHHHhcCCCccEEEccCCC------Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 3567777777765543221 222 678888888887765 3232 4444444 89999999999999775
Q ss_pred -ccccCCCcCcEEeccCCCCc-c--cCcch--hcCCCCcEEeccCCCchh---HhHHh-hcccccCCEEEccCCCCCCC
Q 048774 446 -DSVGDLRYLRHLNLSRTEIK-T--LPESV--SKLYNLHTLLLEDCRRLK---KLCAA-MGNLIKLHHLNNSNTDSLEE 514 (519)
Q Consensus 446 -~~~~~l~~L~~l~l~~~~i~-~--lp~~~--~~l~~L~~l~l~~~~~~~---~lp~~-~~~l~~L~~l~l~~~~~l~~ 514 (519)
..++.+++|++|++++|.+. . +|..+ ..+++|++|++++| .+. .++.. +.++++|++|++++|. +..
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 242 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRD 242 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCS
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCc
Confidence 78899999999999999876 3 35555 78999999999998 455 44433 4678999999999998 554
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.88 E-value=8.2e-09 Score=100.05 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=103.0
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
...++.+.+..+....... ..+..+++|++|.+..+. +....|..+..+++|++|++++|.++.+|..+. +
T Consensus 51 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~ 121 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNK------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--K 121 (330)
T ss_dssp CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--T
T ss_pred CCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCc------CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--c
Confidence 3456666666554444321 346778889988877665 444446677799999999999999999887765 7
Q ss_pred cCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchh--HhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLK--KLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~--~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
+|++|++++|.++.+++ .+..+++|++|++++|.... ..|..+.++++|++|++++|. +..+|..
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~ 189 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG 189 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc
Confidence 89999999999996665 47889999999999984422 456678889999999999988 7778764
No 80
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=3.4e-09 Score=99.09 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=96.1
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+. ...++.+..+++|+.|.+..+. +.. .++ +..+++|+.|++++|.++.+|.... ++
T Consensus 41 ~~L~~L~l~~n~---i~~l~~l~~l~~L~~L~L~~N~------i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSN---IQSLAGMQFFTNLKELHLSHNQ------ISD-LSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp TTCSEEECTTSC---CCCCTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred CcCcEEECcCCC---cccchHHhhCCCCCEEECCCCc------cCC-Chh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 344555554443 3344567788888888877665 222 233 7799999999999999998876433 89
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~l 515 (519)
|++|++++|.++.+| .+..+++|+.|++++| .+..+| .+..+++|++|++++|. +..+
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch
Confidence 999999999999875 5889999999999998 667776 58899999999999998 6554
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=3.7e-09 Score=111.22 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=79.4
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCcc-hh
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPES-VS 472 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~~-~~ 472 (519)
+..+++|+.|.+.++. +....+..+..+++|++|++++|.+..+|+ .++.+++|++|++++|.++.+|+. ++
T Consensus 71 ~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp HHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 4567777777766654 334334456677888888888888776654 457788888888888888777765 47
Q ss_pred cCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 473 KLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
.+++|++|++++|......|..++++++|++|++++|. +..+|
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 187 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD 187 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC
Confidence 77888888888774333344557778888888888776 55443
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.87 E-value=6.7e-09 Score=98.71 Aligned_cols=112 Identities=19% Similarity=0.334 Sum_probs=92.9
Q ss_pred hhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcch
Q 048774 392 FEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESV 471 (519)
Q Consensus 392 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~ 471 (519)
++.+..+++|+.|.+..+. +.. .++ +..+++|++|++++|.++.+|. +..+++|++|++++|.++.+ +.+
T Consensus 61 ~~~~~~l~~L~~L~L~~n~------l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l 130 (291)
T 1h6t_A 61 VQGIQYLPNVTKLFLNGNK------LTD-IKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGL 130 (291)
T ss_dssp CTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGG
T ss_pred ChhHhcCCCCCEEEccCCc------cCC-Ccc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhh
Confidence 3556778899998887765 222 233 7799999999999999998765 89999999999999999987 468
Q ss_pred hcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
..+++|+.|++++| .+..+ ..+..+++|++|++++|. +..+|
T Consensus 131 ~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~ 172 (291)
T 1h6t_A 131 VHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIV 172 (291)
T ss_dssp GGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCG
T ss_pred cCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccch
Confidence 89999999999998 56666 468999999999999998 66664
No 83
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=1e-10 Score=104.59 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=83.3
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSK 473 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~ 473 (519)
.+..+++|+.|.+..+. +.. +| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC------Ccc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 56677888888776665 212 33 666888888999988888888877777788889999888888776 5888
Q ss_pred CCCCcEEeccCCCchhHhHH--hhcccccCCEEEccCCC
Q 048774 474 LYNLHTLLLEDCRRLKKLCA--AMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~--~~~~l~~L~~l~l~~~~ 510 (519)
+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 888999999887 5655543 68888899999998886
No 84
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.87 E-value=1.4e-08 Score=98.39 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=67.6
Q ss_pred CcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEc
Q 048774 429 QRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNN 506 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l 506 (519)
++|+.|++++|.++.+ |..+..+++|++|++++|.++.+++ .+..+++|+.|++++| .+..+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEEC
Confidence 5677777777777754 5567788888888888888885544 6778888888888887 66678888888888888888
Q ss_pred cCCCCCCCCCC
Q 048774 507 SNTDSLEEMPV 517 (519)
Q Consensus 507 ~~~~~l~~lP~ 517 (519)
++|. +..+|.
T Consensus 271 ~~N~-i~~~~~ 280 (330)
T 1xku_A 271 HNNN-ISAIGS 280 (330)
T ss_dssp CSSC-CCCCCT
T ss_pred CCCc-CCccCh
Confidence 8887 777764
No 85
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.87 E-value=9.5e-09 Score=99.00 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=109.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhc-CCC-ceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQN-HFD-LKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~-~f~-~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.++|+++.++.+...+.. +..+.++|+|++|+|||++|+.+++ .... .+. ..+.++......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~---------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERG---------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT---TCCCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTC----------
T ss_pred HHHhCCHHHHHHHHHHHhC---CCCCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccC----------
Confidence 3478999999998876653 2333478999999999999999887 3211 111 122233322111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHH--h-cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHh-cCC
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQ--L-SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKI-MGT 171 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~-~~~ 171 (519)
.............. + .+++.++|+|+++.........+...+.....++++|+||.... +... ...
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 11111111111111 1 25678999999977655455556666655556788888876543 1111 122
Q ss_pred CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 172 LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 172 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
...+.+.+++.++..+++...+...+.... ++....+++.++|.+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 347899999999999999887654332111 5667888999999997543
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.87 E-value=5e-09 Score=107.17 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
..+..+.+..+...... ...+..+++|+.|.+..+. +....|..+. .+++|+.|++++|.++.+|. ...++
T Consensus 120 ~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~------l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~ 191 (487)
T 3oja_A 120 QGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNE------IDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFA 191 (487)
T ss_dssp SSCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSC------CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCT
T ss_pred CCCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCC------CCCcChHHHhhhCCcccEEecCCCccccccc-cccCC
Confidence 44566666555444432 1345667788888776665 5555666666 78899999999998887754 44688
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDS 511 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~ 511 (519)
+|++|++++|.++.+|+.+..+++|+.|++++| .+..+|..+..+++|+.|++++|..
T Consensus 192 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp TCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 899999999999988888888999999999988 5667888888889999999998873
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.86 E-value=5e-09 Score=98.77 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=56.7
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcc--cCcch
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKT--LPESV 471 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~--lp~~~ 471 (519)
+..+++|+.|.+..+. +....+..+..+++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+
T Consensus 72 ~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 72 YQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp TTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ccCCcCCCEEECCCCc------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh
Confidence 3445555555544433 222222333455555555555555554432 34455555555555555543 34455
Q ss_pred hcCCCCcEEeccCCC---------------------------chhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCR---------------------------RLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~---------------------------~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
..+++|+.|++++|. .+..+|.......+|+.|++++|. +..+|.
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH
Confidence 555555555555542 233333333333466677777766 566654
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.85 E-value=2.1e-09 Score=111.92 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCcc-ccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDS-VGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l 451 (519)
...++.+.+..+...... ...+..+++|++|.+..+. +....+..+..+++|++|++++|.+..+|+. ++.+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCccEEECcCCccCccC-hhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 356667776665544332 2456778888888877765 4444455677899999999999999877665 8889
Q ss_pred CcCcEEeccCCCCc--ccCcchhcCCCCcEEeccCCCchhHhH-HhhcccccCCEEEccCCCCCCCCCCC
Q 048774 452 RYLRHLNLSRTEIK--TLPESVSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 452 ~~L~~l~l~~~~i~--~lp~~~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
++|++|++++|.++ ..|..++.+++|++|++++|..+..+| ..+.++++|++|++++|...+.+|..
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 99999999999888 346778889999999999886577776 46888999999999988744445543
No 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.85 E-value=6.5e-09 Score=105.08 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=75.8
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhh-hhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCccc-Ccch
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILT-ELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTL-PESV 471 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~l-p~~~ 471 (519)
.+..+++|+.|.+..+. ....++. .+..+++|++|++++|.++.+|. +..+++|+.|++++|.++.+ |..+
T Consensus 155 ~~~~l~~L~~L~l~~~~------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELK------RLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp TTTTCTTCCEEECCCCT------TCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTT
T ss_pred HhhhCcccCEeCCCCCC------CcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhh
Confidence 34556666666655433 1122333 34477778888888887777763 67777788888887777744 5667
Q ss_pred hcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 472 SKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 472 ~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
..+++|+.|++++|......|..+.++++|+.|++++|. +..+|.
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 272 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPH 272 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCT
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccCh
Confidence 777778888887773333334557777778888887776 666654
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=4.3e-09 Score=109.42 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=96.7
Q ss_pred eEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCc
Q 048774 376 LCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLR 455 (519)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~ 455 (519)
++.+.+..+.... ++.+..+++|+.|.+..+. +. .+|..+..+++|+.|++++|.++.+| .++.+++|+
T Consensus 443 L~~L~Ls~n~l~~---lp~~~~l~~L~~L~Ls~N~------l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 443 VRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNR------LR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp CSEEECTTSCCSS---CCCGGGGTTCCEEECCSSC------CC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred ceEEEecCCCCCC---CcCccccccCcEeecCccc------cc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 4455555544433 4567888999999887765 43 67788889999999999999999998 899999999
Q ss_pred EEeccCCCCccc--CcchhcCCCCcEEeccCCCchhHhHHh----hcccccCCEEEc
Q 048774 456 HLNLSRTEIKTL--PESVSKLYNLHTLLLEDCRRLKKLCAA----MGNLIKLHHLNN 506 (519)
Q Consensus 456 ~l~l~~~~i~~l--p~~~~~l~~L~~l~l~~~~~~~~lp~~----~~~l~~L~~l~l 506 (519)
+|++++|.++.+ |..++.+++|+.|++++| .+..+|+. +..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 999999999977 899999999999999998 66666543 345789999874
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=5.8e-09 Score=109.11 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=68.7
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchh
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVS 472 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~ 472 (519)
+.+..+++|+.|.+..+. +. .++.+..+++|+.|++++|.+..+ +.++.+++|+.|++++|.+..+++ +.
T Consensus 103 ~~l~~l~~L~~L~Ls~N~------l~--~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNG------IS--DINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp TTSTTCTTCCEEECTTSC------CC--CCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred hhhccCCCCCEEEecCCC------CC--CCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 445556666666555443 11 124456677777777777777766 456677777777777777775555 67
Q ss_pred cCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 473 KLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
.+++|+.|+|++| .+..+| .+..+++|+.|++++|+
T Consensus 173 ~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 7777777777776 455554 36777777777777776
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.85 E-value=5.3e-09 Score=111.97 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l 451 (519)
+..++.+.+..+...... ...+..+++|++|.+..+. +....|..+..+++|++|++++|.++.+|+ .+..+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 455666666655444432 1346667777777665554 333334445567777777777777766665 46667
Q ss_pred CcCcEEeccCCCCcccC-cchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 452 RYLRHLNLSRTEIKTLP-ESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp-~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|.
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 77777777777666554 356666667777776663333334445566666666666665
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.84 E-value=1.2e-08 Score=99.02 Aligned_cols=134 Identities=20% Similarity=0.265 Sum_probs=97.2
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
...++.+.+..+...... ...+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+|..+. +
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~ 123 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S 123 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--T
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--c
Confidence 345666666655444332 1356778888888877665 444456677789999999999999998888765 7
Q ss_pred cCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCch--hHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRL--KKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~--~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+|++|++++|.++.+|+. +..+++|+.|++++|... ...|..+..+ +|++|++++|. +..+|.
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~ 189 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK 189 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc
Confidence 899999999999977764 788999999999988432 2345556666 77777777776 566664
No 94
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.84 E-value=2.7e-09 Score=102.27 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=68.0
Q ss_pred hhhhhccCCcccEEeecCccccccCc--cccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchh-HhHHhhc
Q 048774 421 ILTELFKLQRLRIFSLRGYHISELPD--SVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLK-KLCAAMG 496 (519)
Q Consensus 421 ~~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~-~lp~~~~ 496 (519)
.+..+..+++|++|++++|.++.+|. .+..+++|++|++++|.+. ..|..+..+++|++|++++|.... .+|..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 44455677777777777777776653 5677778888888888777 445567778888888888874333 3677788
Q ss_pred ccccCCEEEccCCCCCCCC
Q 048774 497 NLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 497 ~l~~L~~l~l~~~~~l~~l 515 (519)
.+++|++|++++|. +..+
T Consensus 173 ~l~~L~~L~Ls~n~-l~~~ 190 (306)
T 2z66_A 173 ELRNLTFLDLSQCQ-LEQL 190 (306)
T ss_dssp TCTTCCEEECTTSC-CCEE
T ss_pred hCcCCCEEECCCCC-cCCc
Confidence 88888888888887 5554
No 95
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=2.4e-09 Score=103.64 Aligned_cols=182 Identities=15% Similarity=0.041 Sum_probs=107.7
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC--ceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD--LKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.++|++++++.|...+.. +..+.++|+|++|+|||++|+.+++ ....... ..+.++....... ...+..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 98 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGI-NVIREKVK 98 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHH-HTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCch-HHHHHHHH
Confidence 4578999998888755442 2334578999999999999999987 3322211 1222322211000 11111111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH-HHh-cCCCCe
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV-AKI-MGTLPA 174 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~-~~~~~~ 174 (519)
....... ...+++.++|+|+++.........+...+.....++++|+|+..... ... ......
T Consensus 99 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 99 EFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 1110000 11256789999999776544455555555444557888888876421 111 111246
Q ss_pred eecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 175 YQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 175 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
+.+.+++.++...++...+...+... .++....+++.++|.|..+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLEL----TEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEE----CHHHHHHHHHHHTTCHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHCCCCHHHHHH
Confidence 88999999999999988765433211 156778899999999986443
No 96
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.84 E-value=4.1e-09 Score=93.50 Aligned_cols=86 Identities=19% Similarity=0.329 Sum_probs=74.0
Q ss_pred cccEEeecCccccccCcc--ccCCCcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhH-HhhcccccCCEEE
Q 048774 430 RLRIFSLRGYHISELPDS--VGDLRYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLN 505 (519)
Q Consensus 430 ~L~~L~l~~~~~~~lp~~--~~~l~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~ 505 (519)
+|+.|++++|.+..+|+. +..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+| ..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 899999999999988764 88999999999999999955 778999999999999999 555554 4588999999999
Q ss_pred ccCCCCCCCC-CC
Q 048774 506 NSNTDSLEEM-PV 517 (519)
Q Consensus 506 l~~~~~l~~l-P~ 517 (519)
+++|. +..+ |.
T Consensus 109 L~~N~-l~~~~~~ 120 (192)
T 1w8a_A 109 LYDNQ-ISCVMPG 120 (192)
T ss_dssp CCSSC-CCEECTT
T ss_pred CCCCc-CCeeCHH
Confidence 99998 5544 44
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.84 E-value=1.1e-08 Score=95.56 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=98.7
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
...++.+.+..+..... +.+..+++|+.|.+..+. +.. ++ .+.. ++|+.|++++|.++.+| .+..++
T Consensus 62 l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~L~~N~------l~~-l~-~~~~-~~L~~L~L~~N~l~~~~-~l~~l~ 128 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDL---SPLKDLTKLEELSVNRNR------LKN-LN-GIPS-ACLSRLFLDNNELRDTD-SLIHLK 128 (263)
T ss_dssp CTTCCEEECCSSCCCCC---GGGTTCSSCCEEECCSSC------CSC-CT-TCCC-SSCCEEECCSSCCSBSG-GGTTCT
T ss_pred CCCCCEEECCCCccCCC---hhhccCCCCCEEECCCCc------cCC-cC-cccc-CcccEEEccCCccCCCh-hhcCcc
Confidence 35667777766554443 447788999998887765 211 22 2333 89999999999999875 589999
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+|++|++++|.++.+| .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +...|
T Consensus 129 ~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 129 NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred cccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence 9999999999999886 6899999999999998 55555 568899999999999997 55444
No 98
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.83 E-value=8.9e-09 Score=104.46 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=83.4
Q ss_pred CeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhh-hccCCcccEEeecCccccccCccccCCCc
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTE-LFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
.++.+.+..+...... ...+..+++|+.|.+..+. ....++.. +..+++|++|++++|.++.+| .+..+++
T Consensus 148 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~------~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 219 (452)
T 3zyi_A 148 KLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELK------KLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVG 219 (452)
T ss_dssp TCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCT------TCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTT
T ss_pred CCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCC------CccccChhhccCCCCCCEEECCCCcccccc-ccccccc
Confidence 4444544444333222 1234556666666655433 11223332 447777888888888777775 3677778
Q ss_pred CcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 454 L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|+.|++++|.++.+ |..+..+++|+.|++++|......|..+..+++|+.|++++|. +..+|.
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 283 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH 283 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh
Confidence 88888888877744 5567777788888888774333345567777788888888776 666664
No 99
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.82 E-value=8.4e-09 Score=102.48 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=57.3
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSK 473 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~ 473 (519)
.+..+++|+.|.+..+. +....|..+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+|..+..
T Consensus 243 ~l~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 316 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNE------LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316 (390)
T ss_dssp GGGGCTTCSEEECCSSC------CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH
T ss_pred HHcCCCCccEEECCCCc------CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccc
Confidence 34445555555544443 333334444455555555555555555555555555555555555555555555555
Q ss_pred CCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 474 LYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 474 l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
+++|+.|++++| .+..+| +..+++|+.|++++|+
T Consensus 317 l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 555555555555 333343 4455555556555554
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.82 E-value=5.2e-09 Score=96.40 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=98.6
Q ss_pred CCeEEEEEEe-cCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCccc---EEeecCc-cccccCc-c
Q 048774 374 RNLCHLSYIR-GDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLR---IFSLRGY-HISELPD-S 447 (519)
Q Consensus 374 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~lp~-~ 447 (519)
..++.+.+.. +...... ...+..+++|+.|.+..+. +.. +|. +..+++|+ +|++++| .++.+|+ .
T Consensus 80 ~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~------l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTG------LKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp TTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEEC------CCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred cCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCC------Ccc-ccc-cccccccccccEEECCCCcchhhcCccc
Confidence 4556666665 4444332 1345567778887776664 211 333 55667776 9999999 8988865 4
Q ss_pred ccCCCcCc-EEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHH-hhccc-ccCCEEEccCCCCCCCCCCC
Q 048774 448 VGDLRYLR-HLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCA-AMGNL-IKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 448 ~~~l~~L~-~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l-~~L~~l~l~~~~~l~~lP~~ 518 (519)
+..+++|+ .|++++|.++.+|.......+|+.|++++|..+..+|. .+..+ ++|+.|++++|. +..+|..
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~ 223 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK 223 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT
T ss_pred ccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh
Confidence 78899999 99999999998888766568899999999854767754 57888 899999999988 7888763
No 101
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.81 E-value=5.7e-09 Score=103.00 Aligned_cols=196 Identities=13% Similarity=0.123 Sum_probs=108.8
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH-
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS- 97 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~- 97 (519)
+.++||+++++.|...+.. +...+.++|+|++|+|||++|+.+++. ....... ....++.. .. ...+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~-~~~~~~~~---~~-~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-TATPCGVC---DN-CREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHHHHHHHH--HSCTTCS-CSSCCSSS---HH-HHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHH--hCCCCCC-CCCCCccc---HH-HHHHhccC
Confidence 4489999998887665432 223456789999999999999998862 2211100 00000100 00 0111100
Q ss_pred ---h---hccCCCCCCCHHHHHHHHHHH-hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHH-h
Q 048774 98 ---I---VTHQNVDNLNLNKLQEELNKQ-LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAK-I 168 (519)
Q Consensus 98 ---l---~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~-~ 168 (519)
+ .............+...+... ..+++.++|+||++.........+...+.....+..+|++|.... +.. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0 000001112222222221110 134678999999977655555555555554445677777776432 111 1
Q ss_pred cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHHh
Q 048774 169 MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTLG 227 (519)
Q Consensus 169 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 227 (519)
......+.+.+++.++..+++...+...+.... ++.+..|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 122357899999999999999876533221111 5667889999999998765543
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.8e-09 Score=100.20 Aligned_cols=171 Identities=10% Similarity=0.019 Sum_probs=103.2
Q ss_pred cccccceeeeEeecCCCCCCC-CCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-----C--ceEEEEEcCCCCHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMP-EWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-----D--LKAWTCVSDDFDVIRL 90 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~-~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-----~--~~~wv~~~~~~~~~~~ 90 (519)
+..+|||+++..+...+...- ++.++.+.|+|++|+|||++++.+++. ..... . ..+.+++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 346899999999876544332 345667789999999999999999983 33211 1 3556777677788889
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHH--hcCCeEEEEecCccccCccchhhhccccC---CCCCCcEEEEEecchh-
Q 048774 91 TKTILTSIVTHQNVDNLNLNKLQEELNKQ--LSGKKFLLVLDDVWNRNYDDWVDFSRPLG---ASAQGSKIIVSTRNHE- 164 (519)
Q Consensus 91 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~~~~~~~~l~~~l~---~~~~~~~ilvTsr~~~- 164 (519)
+..|++++...........+.+...+... -.+++++++||+++... ..+.+...+. .......+|.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999998655332233333333333332 24678999999996543 1122222221 1111223333343321
Q ss_pred ----H----HHhcCCCCeeecCCCChhhHHHHHHHhhh
Q 048774 165 ----V----AKIMGTLPAYQLKKLSYNDCLAIFAQHSL 194 (519)
Q Consensus 165 ----~----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 194 (519)
+ ...+. ...+.+.+++.+|-.+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 14688999999999999988764
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.80 E-value=7.4e-09 Score=101.69 Aligned_cols=112 Identities=22% Similarity=0.204 Sum_probs=88.9
Q ss_pred CCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccC-ccccCCCcCcEEeccCCCCcccCc-chhcCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIKTLPE-SVSKLY 475 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~ 475 (519)
..++.|.+..+. +....+..+. .+++|+.|++++|.+..+| ..+..+++|++|++++|.++.+|+ .+..++
T Consensus 39 ~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCEEECCCCC------CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 345666655554 3332333344 8999999999999999876 468999999999999999997766 588999
Q ss_pred CCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 476 NLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 476 ~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+|+.|+|++|......|..|..+++|++|++++|. +..+|.
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~ 153 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV 153 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCG
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCH
Confidence 99999999994433346679999999999999998 888875
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=5.3e-09 Score=106.98 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=100.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCcccc-CC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVG-DL 451 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~-~l 451 (519)
..+..+.+..+....... ..+++|+.|.+.++. +....|..+..+++|++|++++|.+.. .|..+. .+
T Consensus 99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSC------CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCC------CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 344455544443333221 245677877776665 445556667789999999999999995 466665 79
Q ss_pred CcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 452 RYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
++|++|++++|.++.+|. ...+++|+.|++++| .+..+|+.+..+++|+.|++++|. +..+|..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 232 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA 232 (487)
T ss_dssp TTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTT
T ss_pred CcccEEecCCCccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccccchh
Confidence 999999999999997765 446899999999998 677788789999999999999998 7778864
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.80 E-value=1.1e-08 Score=103.94 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLR 452 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~ 452 (519)
..++.+.+..+...... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.+..+ |..+..++
T Consensus 275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNE------INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred cCceEEEecCccccccc-hhhcccCCCCCEEECCCCc------ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 45566666555443332 2345677888888876665 4444455677899999999999999866 56778899
Q ss_pred cCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 453 ~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+|++|++++|.++.+ |..+..+++|++|++++| .+..+|. .+..+++|++|++++|+.....|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999955 778899999999999998 5666665 46889999999999998666666
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.80 E-value=8.6e-09 Score=112.98 Aligned_cols=133 Identities=19% Similarity=0.119 Sum_probs=102.7
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchh-hhhhccCCcccEEeecCcccccc-Ccccc
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSI-LTELFKLQRLRIFSLRGYHISEL-PDSVG 449 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~~ 449 (519)
.+..++.+.+..+...... ...+..+++|+.|.+..+. ....+ |..+.++++|++|++++|.+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 5677888888877655443 2567788888888887764 23444 45567899999999999999865 77899
Q ss_pred CCCcCcEEeccCCCCc-ccCcc--hhcCCCCcEEeccCCCchhHh-HHhhcccccCCEEEccCCCC
Q 048774 450 DLRYLRHLNLSRTEIK-TLPES--VSKLYNLHTLLLEDCRRLKKL-CAAMGNLIKLHHLNNSNTDS 511 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~-~lp~~--~~~l~~L~~l~l~~~~~~~~l-p~~~~~l~~L~~l~l~~~~~ 511 (519)
.+++|++|++++|.++ ..|.. +.++++|++|++++|...... +..++++++|++|++++|..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 9999999999999988 46665 888999999999998443332 35688999999999999873
No 107
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=1e-08 Score=107.87 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=75.6
Q ss_pred CeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcC
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYL 454 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 454 (519)
.+..+.+..+.... .+.+..+++|+.|.+.++. +....|..+..+++|+.|++++|.+..+|..+..+++|
T Consensus 233 ~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 303 (597)
T 3oja_B 233 ELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNE------LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303 (597)
T ss_dssp CCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSC------CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC
T ss_pred CCCEEECCCCCCCC---ChhhccCCCCCEEECCCCc------cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC
Confidence 34444444433332 2445556666666655544 34444555566677777777777766666666666677
Q ss_pred cEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 455 RHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 455 ~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
++|++++|.++.+|..+..+++|+.|++++| .+..+| +..+++|+.|++++|+
T Consensus 304 ~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 7777777777666666666677777777766 344443 5566677777777665
No 108
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.79 E-value=1.2e-08 Score=103.45 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCccc-CcchhcCC
Q 048774 398 IQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTL-PESVSKLY 475 (519)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~l-p~~~~~l~ 475 (519)
.++++.+.+..+. +....|..+..+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ |..+..++
T Consensus 274 ~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 274 ASGVKTCDLSKSK------IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TSCCCEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccCceEEEecCcc------ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 3567777776665 4455566677999999999999999966 56888999999999999999955 56788999
Q ss_pred CCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 476 NLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 476 ~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+|++|++++|......|..+..+++|++|++++|. +.++|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCH
Confidence 99999999995444457789999999999999998 777775
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.79 E-value=7.5e-09 Score=109.64 Aligned_cols=109 Identities=21% Similarity=0.271 Sum_probs=88.5
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCc-chhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPE-SVSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~ 476 (519)
..++.|.+..+. +..-.+..+..+++|++|++++|.++.+|+ .+..+++|++|++++|.++.+|+ .|..+.+
T Consensus 52 ~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 356777666554 333333456799999999999999998865 58899999999999999998886 4789999
Q ss_pred CcEEeccCCCchhHhHH-hhcccccCCEEEccCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCA-AMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l~~~~~l~~l 515 (519)
|++|++++| .+..+|. .|+++++|++|++++|. +..+
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~ 163 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSF 163 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCC
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccC
Confidence 999999998 6666765 48999999999999998 5543
No 110
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.78 E-value=2.3e-08 Score=103.43 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=104.2
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
...++.+.+..+...... ...+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+|.. .++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 20 SQKTTILNISQNYISELW-TSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp CTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred cccccEEECCCCcccccC-hhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 366777777766554443 2467788999999887775 5555567778999999999999999998876 899
Q ss_pred cCcEEeccCCCCcc--cCcchhcCCCCcEEeccCCCchhHhHHhhcccccC--CEEEccCCCC--CCCCCCC
Q 048774 453 YLRHLNLSRTEIKT--LPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL--HHLNNSNTDS--LEEMPVG 518 (519)
Q Consensus 453 ~L~~l~l~~~~i~~--lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L--~~l~l~~~~~--l~~lP~~ 518 (519)
+|++|++++|.++. +|..++.+++|++|++++|. +.. ..+..+++| +.|++++|.. .+..|..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccc
Confidence 99999999999984 67899999999999999984 433 347778888 9999999884 3444543
No 111
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.78 E-value=1.6e-08 Score=104.51 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=67.4
Q ss_pred hhhhcCCCCceecccccccCCCCCCCc--hhhhhhccCCcccEEeecCccccc-cCcc-ccCCCcCcEEeccCCCCc-cc
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAP--SILTELFKLQRLRIFSLRGYHISE-LPDS-VGDLRYLRHLNLSRTEIK-TL 467 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-lp~~-~~~l~~L~~l~l~~~~i~-~l 467 (519)
..+..+++|+.|.+..+. +.. ..|..+..+++|++|++++|.+.. +|.. +..+++|+.|++++|.++ ..
T Consensus 342 ~~~~~l~~L~~L~L~~N~------l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQ------LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp TTCCCCSSCCEEECCSSC------CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred hhhccCCCCCEEEccCCc------cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch
Confidence 344556666666655554 222 344555677777777777777765 6543 555666666666666664 44
Q ss_pred CcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 468 PESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 468 p~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|..+. ++|+.|++++| .+..+|..+..+++|++|++++|. +..+|.
T Consensus 416 ~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 416 FRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp GGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred hhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 44332 45666666665 444566655566666666666665 555654
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.77 E-value=1.7e-08 Score=88.13 Aligned_cols=89 Identities=27% Similarity=0.455 Sum_probs=76.6
Q ss_pred CCcccEEeecCccccccCcc-ccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCCchhHhHH-hhcccccCCEE
Q 048774 428 LQRLRIFSLRGYHISELPDS-VGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHL 504 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l 504 (519)
.++|+.|++++|.++.+|+. +..+++|++|++++|.++.+|+. +..+++|+.|++++| .+..+|. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 36899999999999988764 68899999999999999977765 689999999999998 5666665 47899999999
Q ss_pred EccCCCCCCCCCCC
Q 048774 505 NNSNTDSLEEMPVG 518 (519)
Q Consensus 505 ~l~~~~~l~~lP~~ 518 (519)
++++|. +..+|..
T Consensus 106 ~l~~N~-l~~~~~~ 118 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDG 118 (177)
T ss_dssp ECCSSC-CSCCCTT
T ss_pred ECcCCc-ceEeCHH
Confidence 999998 7888764
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=9.8e-09 Score=107.40 Aligned_cols=127 Identities=24% Similarity=0.330 Sum_probs=100.2
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+.... ++.+..+++|+.|.+..+. + ..++.+..+++|+.|++++|.+..+| .+..+++
T Consensus 65 ~~L~~L~Ls~N~l~~---~~~l~~l~~L~~L~Ls~N~------l--~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~ 132 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDENK------I--KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQ 132 (605)
T ss_dssp TTCCEEECTTSCCCC---CGGGGGCTTCCEEECCSSC------C--CCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTT
T ss_pred CCCCEEEeeCCCCCC---ChhhccCCCCCEEECcCCC------C--CCChhhccCCCCCEEEecCCCCCCCc-cccCCCc
Confidence 455566655544333 3447788899988887765 2 12446779999999999999999874 5889999
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|+.|++++|.++.+ +.+..+++|+.|+|++| .+..+++ +..+++|+.|+|++|. +..+|
T Consensus 133 L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~ 191 (605)
T 1m9s_A 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNH-ISDLR 191 (605)
T ss_dssp CSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCBCG
T ss_pred cCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCC-CCCCh
Confidence 99999999999977 67899999999999998 5555555 8999999999999997 67665
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.77 E-value=3.6e-09 Score=101.66 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=45.6
Q ss_pred cCCcccEEeecCccccccCcc----ccCCCcCcEEeccCCCCccc-CcchhcC---CCCcEEeccCCCchhHhHHhhccc
Q 048774 427 KLQRLRIFSLRGYHISELPDS----VGDLRYLRHLNLSRTEIKTL-PESVSKL---YNLHTLLLEDCRRLKKLCAAMGNL 498 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~l~l~~~~i~~l-p~~~~~l---~~L~~l~l~~~~~~~~lp~~~~~l 498 (519)
.+++|++|++++|.++.+|.. +..+++|++|++++|.++.. |+.+..+ ++|++|++++| .+..+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~-- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP-- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--
Confidence 455555555555555544331 24455666666666665533 5555444 45666666655 3445555443
Q ss_pred ccCCEEEccCCCCCCCCC
Q 048774 499 IKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 499 ~~L~~l~l~~~~~l~~lP 516 (519)
++|++|++++|. +..+|
T Consensus 272 ~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 272 AKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp SCCSCEECCSCC-CCSCC
T ss_pred CCCCEEECCCCc-CCCCc
Confidence 466666666655 44443
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.76 E-value=9.8e-09 Score=98.90 Aligned_cols=113 Identities=15% Similarity=0.063 Sum_probs=90.6
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-Cccc-cCCCcCcEEeccCCCCcccCcchhcC
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSV-GDLRYLRHLNLSRTEIKTLPESVSKL 474 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~-~~l~~L~~l~l~~~~i~~lp~~~~~l 474 (519)
.+++|+.|.+..+. +....+..+..+++|++|++++|.+..+ |..+ ..+++|++|++++|.++.+|.. ..+
T Consensus 118 ~~~~L~~L~l~~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l 190 (317)
T 3o53_A 118 RGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF 190 (317)
T ss_dssp CCSSCEEEECCSSC------CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC
T ss_pred ccCCCCEEECCCCC------CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-ccc
Confidence 35667777766654 3343344566899999999999999965 4445 4789999999999999977654 458
Q ss_pred CCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
++|+.|++++| .+..+|..+..+++|++|++++|. +..+|..
T Consensus 191 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~ 232 (317)
T 3o53_A 191 AKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA 232 (317)
T ss_dssp TTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTT
T ss_pred ccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhH
Confidence 99999999998 677788889999999999999998 7888864
No 116
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=9e-09 Score=100.80 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=91.6
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCcc-hhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~ 476 (519)
++++.|.+.++. +....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|+. +..+++
T Consensus 52 ~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCc------CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 567888776665 3332333567999999999999999976 45689999999999999999988887 889999
Q ss_pred CcEEeccCCCchhHhHH--hhcccccCCEEEccCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLCA--AMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp~--~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++| .+..+|. .+.++++|++|++++|+.++.+|
T Consensus 126 L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 126 LTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 999999998 6677776 68899999999999996577664
No 117
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=106.96 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=87.4
Q ss_pred hhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccc--ccCccccCCCcCcEEeccCCCCccc-Ccc
Q 048774 394 KLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHIS--ELPDSVGDLRYLRHLNLSRTEIKTL-PES 470 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~l~l~~~~i~~l-p~~ 470 (519)
.+..+++|+.|.+..+. +....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++.+ |..
T Consensus 416 ~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTH------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp TTTTCTTCCEEECTTSC------CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhhcCCCCCEEeCcCCc------ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 34556667766665554 33444555668888999999988886 5788888888999999998888844 778
Q ss_pred hhcCCCCcEEeccCCCchhHhH-HhhcccccCCEEEccCCCCCCCCCC
Q 048774 471 VSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 471 ~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
+..+++|++|++++| .+..+| ..+.++++|+.|++++|+..+..|.
T Consensus 490 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 490 FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888889999999888 444444 4578888999999998886665553
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=7.3e-10 Score=98.96 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+.... ++.+..+++|+.|.+..+. +. .+|..+..+++|++|++++|.++.+| .+..+++
T Consensus 48 ~~L~~L~ls~n~l~~---l~~~~~l~~L~~L~l~~n~------l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 48 KACKHLALSTNNIEK---ISSLSGMENLRILSLGRNL------IK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp TTCSEEECSEEEESC---CCCHHHHTTCCEEEEEEEE------EC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred CCCCEEECCCCCCcc---ccccccCCCCCEEECCCCC------cc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 345555554443333 3466778888888877765 22 34555557788999999999988876 5888889
Q ss_pred CcEEeccCCCCcccCc--chhcCCCCcEEeccCCCchhHhHH----------hhcccccCCEEE
Q 048774 454 LRHLNLSRTEIKTLPE--SVSKLYNLHTLLLEDCRRLKKLCA----------AMGNLIKLHHLN 505 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~--~~~~l~~L~~l~l~~~~~~~~lp~----------~~~~l~~L~~l~ 505 (519)
|++|++++|.++.+|. .+..+++|++|++++|......|. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999887664 688889999999999843333332 277888999887
No 119
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.73 E-value=7.2e-08 Score=94.03 Aligned_cols=110 Identities=20% Similarity=0.315 Sum_probs=65.9
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcC
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKL 474 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l 474 (519)
+..+++|+.|.+.++. +.. .++ +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+| .+..+
T Consensus 217 ~~~~~~L~~L~l~~n~------l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l 286 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK------ITD-LSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNL 286 (347)
T ss_dssp GGGCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGC
T ss_pred hhcCCcCCEEEccCCc------cCC-Ccc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh-hhcCC
Confidence 4556666666555543 111 121 556666777777777666553 4666667777777776666553 36666
Q ss_pred CCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCC
Q 048774 475 YNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~l 515 (519)
++|+.|++++|......|..+..+++|++|++++|. +..+
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 677777777664444455556666777777777766 4444
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.71 E-value=3.3e-08 Score=103.26 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=80.3
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCc--hhhhhhccCCcccEEeecCccccc-cCcc-cc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAP--SILTELFKLQRLRIFSLRGYHISE-LPDS-VG 449 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-lp~~-~~ 449 (519)
..++.+.+..+..... ....+..+++|+.|.+..+. +.. ..|..+..+++|+.|++++|.+.. +|.. +.
T Consensus 353 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNG------LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSC------CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred CCceEEECCCCccccc-hhhhhcccCCCCEEECCCCC------cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 3444555544433331 12445566777777665554 222 344556677778888888877775 6653 55
Q ss_pred CCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCCCC
Q 048774 450 DLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 450 ~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
.+++|++|++++|.++ ..|..+. ++|+.|++++| .+..+|..+..+++|++|++++|. +..+|..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~ 491 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDG 491 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTT
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHH
Confidence 6666777777666665 4444332 46777777766 555666666677777777777766 5666653
No 121
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.71 E-value=2.8e-08 Score=95.35 Aligned_cols=138 Identities=15% Similarity=0.055 Sum_probs=87.5
Q ss_pred CCeEEEEEEecCCccchh---hhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc---cCc-
Q 048774 374 RNLCHLSYIRGDCDGVQR---FEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE---LPD- 446 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~- 446 (519)
..++.+.+..+....... ...+..+++|+.|.+..+. +....+..+..+++|++|++++|.+.. ++.
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC------cchhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 344555555554443111 1223356777777766554 333334455578888888888887642 322
Q ss_pred -cccCCCcCcEEeccCCCCcccCcc----hhcCCCCcEEeccCCCchhHhHHhhccc---ccCCEEEccCCCCCCCCCCC
Q 048774 447 -SVGDLRYLRHLNLSRTEIKTLPES----VSKLYNLHTLLLEDCRRLKKLCAAMGNL---IKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 447 -~~~~l~~L~~l~l~~~~i~~lp~~----~~~l~~L~~l~l~~~~~~~~lp~~~~~l---~~L~~l~l~~~~~l~~lP~~ 518 (519)
.+..+++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+ ++|++|++++|. +.++|..
T Consensus 191 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~ 269 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG 269 (310)
T ss_dssp SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC
T ss_pred HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh
Confidence 235778888888888888766552 4677888888888874333347666666 588888888887 6788765
No 122
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.70 E-value=2e-08 Score=105.85 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=50.3
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDL 451 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l 451 (519)
+..++.+.+..+...... ...+..+++|++|.+..+. +....|..+..+++|++|++++|.+..+ |..++.+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCc------cceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 345555555544443332 2345556666666555543 2233333444555555555555555433 3344455
Q ss_pred CcCcEEeccCCCCccc-CcchhcCCCCcEEeccCC
Q 048774 452 RYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDC 485 (519)
Q Consensus 452 ~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~ 485 (519)
++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCC
Confidence 5555555555544433 333444444444444444
No 123
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.69 E-value=1.5e-08 Score=105.42 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=93.9
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccC-ccccCCCcCcEEeccCCCCcccCcc-hhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIKTLPES-VSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~ 476 (519)
++++.|.+..+. +....|..+..+++|++|++++|.+..+| ..+..+++|++|++++|.++.+|+. ++.+++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 678888777765 44444566789999999999999999765 6789999999999999999977776 999999
Q ss_pred CcEEeccCCCchh--HhHHhhcccccCCEEEccCCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLK--KLCAAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 477 L~~l~l~~~~~~~--~lp~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|++|++++| .+. ..|..++++++|++|++++|..++.+|.
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCH
Confidence 999999998 454 3466799999999999999987777763
No 124
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.68 E-value=4.7e-08 Score=93.84 Aligned_cols=138 Identities=16% Similarity=0.089 Sum_probs=102.6
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcC-----CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc---c
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDI-----QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE---L 444 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---l 444 (519)
...++.+.+..+...... ..+..+ ++|+.|.+..+. +....+..+..+++|++|++++|.+.. +
T Consensus 120 l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAH------SLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp SCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCS------CCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred CCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCC------CccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 456778888777665541 333444 888888887765 444445667799999999999998752 3
Q ss_pred Cccc--cCCCcCcEEeccCCCCcccCc---c-hhcCCCCcEEeccCCCchhHhH-HhhcccccCCEEEccCCCCCCCCCC
Q 048774 445 PDSV--GDLRYLRHLNLSRTEIKTLPE---S-VSKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 445 p~~~--~~l~~L~~l~l~~~~i~~lp~---~-~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~l~~lP~ 517 (519)
|..+ ..+++|++|++++|.++.+|. . +..+++|+.|++++|......| ..+..+++|++|++++|. +.++|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhh
Confidence 4455 789999999999999985442 2 3577999999999994434343 346678999999999998 789987
Q ss_pred CC
Q 048774 518 GI 519 (519)
Q Consensus 518 ~~ 519 (519)
.+
T Consensus 271 ~~ 272 (312)
T 1wwl_A 271 GL 272 (312)
T ss_dssp SC
T ss_pred hc
Confidence 53
No 125
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.68 E-value=6.5e-08 Score=94.32 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcC
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKL 474 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l 474 (519)
+..+++|+.|.+..+. +. .++.+..+++|++|++++|.+..+|. +..+++|++|++++|.....++.+..+
T Consensus 84 ~~~l~~L~~L~L~~n~------i~--~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l 154 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNK------IT--DISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNM 154 (347)
T ss_dssp GTTCTTCCEEECCSSC------CC--CCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTC
T ss_pred hhcCCcCCEEEccCCc------cc--CchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhC
Confidence 5555666666554443 11 12234556666666666666655544 555555555555555433333335555
Q ss_pred CCCcEEeccCCCchhHhHHhhcccccCCEEEccCCC
Q 048774 475 YNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 475 ~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~ 510 (519)
++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 155 ~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 155 TGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSC
T ss_pred CCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCc
Confidence 55555555554 2333332 4455555555555554
No 126
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.67 E-value=4.5e-08 Score=99.97 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=52.1
Q ss_pred hccCCcccEEeecCccccccC-ccccCCCcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhHH-hhcccccC
Q 048774 425 LFKLQRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLCA-AMGNLIKL 501 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L 501 (519)
+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.++ ..|..+..+++|+.|++++| .+..+|. .+..+++|
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNL 322 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGC
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCccc
Confidence 346666666666666666543 34566666666666666666 33555666666777777666 4444443 35566667
Q ss_pred CEEEccCCC
Q 048774 502 HHLNNSNTD 510 (519)
Q Consensus 502 ~~l~l~~~~ 510 (519)
+.|++++|+
T Consensus 323 ~~L~l~~N~ 331 (477)
T 2id5_A 323 ETLILDSNP 331 (477)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 777776665
No 127
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.67 E-value=4.2e-08 Score=95.11 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=75.3
Q ss_pred CcccEEeecCccccccC-ccccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEc
Q 048774 429 QRLRIFSLRGYHISELP-DSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNN 506 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l 506 (519)
++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+++ .+..+++|+.|++++| .+..+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEEC
Confidence 67888889999888665 678889999999999999996654 7889999999999998 67789988999999999999
Q ss_pred cCCCCCCCCCC
Q 048774 507 SNTDSLEEMPV 517 (519)
Q Consensus 507 ~~~~~l~~lP~ 517 (519)
++|. +..+|.
T Consensus 272 ~~N~-l~~~~~ 281 (332)
T 2ft3_A 272 HTNN-ITKVGV 281 (332)
T ss_dssp CSSC-CCBCCT
T ss_pred CCCC-CCccCh
Confidence 9998 787764
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.67 E-value=4.2e-08 Score=85.05 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=73.4
Q ss_pred cccEEeecCccccccCccccCCCcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEcc
Q 048774 430 RLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNS 507 (519)
Q Consensus 430 ~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~ 507 (519)
+.+.+++++|.++.+|..+ .++|++|++++|.|+.+ |..+..+++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3578999999999999876 38899999999999976 567899999999999998 66677665 6899999999999
Q ss_pred CCCCCCCCCCC
Q 048774 508 NTDSLEEMPVG 518 (519)
Q Consensus 508 ~~~~l~~lP~~ 518 (519)
+|. +..+|..
T Consensus 87 ~N~-l~~~~~~ 96 (170)
T 3g39_A 87 DNQ-LKSIPRG 96 (170)
T ss_dssp SSC-CCCCCTT
T ss_pred CCc-cCEeCHH
Confidence 998 7888763
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=4e-08 Score=85.54 Aligned_cols=84 Identities=20% Similarity=0.405 Sum_probs=73.6
Q ss_pred ccEEeecCccccccCccccCCCcCcEEeccCCCCccc-CcchhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccC
Q 048774 431 LRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTL-PESVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSN 508 (519)
Q Consensus 431 L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~l-p~~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~ 508 (519)
-+.+++++|.+..+|..+. ++|++|++++|.|+.+ |..+..+++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 3788999999999998774 8999999999999966 567899999999999998 67778765 68999999999999
Q ss_pred CCCCCCCCCC
Q 048774 509 TDSLEEMPVG 518 (519)
Q Consensus 509 ~~~l~~lP~~ 518 (519)
|. +..+|..
T Consensus 91 N~-l~~l~~~ 99 (174)
T 2r9u_A 91 NH-LKSIPRG 99 (174)
T ss_dssp SC-CCCCCTT
T ss_pred Cc-cceeCHH
Confidence 98 8888764
No 130
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.66 E-value=4.7e-08 Score=102.08 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=88.2
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
+..++.+.+..+...... ...+..+++|+.|.+..+. +....|..+..+++|++|++++|.++.+|.. .++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 356666666665544433 1356677788887776665 4444455566888888888888888888776 788
Q ss_pred cCcEEeccCCCCcccC--cchhcCCCCcEEeccCCCchhHhHHhhcccccC--CEEEccCCCC
Q 048774 453 YLRHLNLSRTEIKTLP--ESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL--HHLNNSNTDS 511 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp--~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L--~~l~l~~~~~ 511 (519)
+|++|++++|.++.+| ..++++++|++|++++|. +.. ..+..+++| +.|++++|..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccc
Confidence 8888888888887654 678888888888888873 332 235555666 8888888774
No 131
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.65 E-value=6.5e-08 Score=101.97 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=75.4
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc--c--CccccCCCcCcEEeccCCCCccc-Cc
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE--L--PDSVGDLRYLRHLNLSRTEIKTL-PE 469 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l--p~~~~~l~~L~~l~l~~~~i~~l-p~ 469 (519)
+..+++|+.|.+..+. +....+..+..+++|+.|++++|.+.. + +..+..+++|++|++++|.++.+ |.
T Consensus 421 ~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL------LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp TTTCTTCCEEECTTCC------CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred hhCcccCCEEECCCCc------cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 3445555555554443 333334445577778888888877763 2 24567777888888888877744 56
Q ss_pred chhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 470 SVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 470 ~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
.+..+++|+.|++++|......|..+.++++| +|++++|. +..+|
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~-l~~~~ 539 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH-ISIIL 539 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC-CCCCC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc-ccccC
Confidence 67778888888888875555566677778888 88888877 44444
No 132
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.64 E-value=4.4e-08 Score=99.25 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=98.1
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+..... +.+..+++|+.|.+..+. +.. .+ +..+++|++|++++|.++.+| ++.+++
T Consensus 42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~------l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNN------ITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSC------CSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCc------CCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 5566676666554443 567788889988877765 222 12 678999999999999999875 889999
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|++++|..++.++
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~ 165 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLD 165 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCC
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccc
Confidence 999999999999876 889999999999998 555564 7899999999999997677664
No 133
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.62 E-value=8.9e-08 Score=97.00 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=100.5
Q ss_pred CCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCC
Q 048774 373 SRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLR 452 (519)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~ 452 (519)
...++.+.+..+..... + +..+++|+.|.+..+. +.. . .+..+++|++|++++|.++.+| ++.++
T Consensus 63 l~~L~~L~Ls~n~l~~~---~-~~~l~~L~~L~Ls~N~------l~~-~--~~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL---D-LSQNTNLTYLACDSNK------LTN-L--DVTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp CTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSC------CSC-C--CCTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred cCCCCEEEccCCcCCeE---c-cccCCCCCEEECcCCC------Cce-e--ecCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 35667777766655543 2 6788889988887765 222 1 2678999999999999999886 88999
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
+|++|++++|.++.+| ++.+++|+.|++++|..++.+ .++.+++|++|++++|. +..+|
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~ 186 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD 186 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec
Confidence 9999999999999875 888999999999999777777 47899999999999998 77776
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.62 E-value=1.4e-08 Score=105.09 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=79.4
Q ss_pred CeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCcC
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRYL 454 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L 454 (519)
.+..+.+..+.... ++. .+++|+.|.+.++. +.. +|. .+++|++|++++|.++.+|. +. ++|
T Consensus 121 ~L~~L~Ls~N~l~~---lp~--~l~~L~~L~Ls~N~------l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L 182 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM---LPE--LPALLEYINADNNQ------LTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESL 182 (571)
T ss_dssp TCCEEECCSSCCSC---CCC--CCTTCCEEECCSSC------CSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTC
T ss_pred CCCEEECCCCcCCC---CCC--cCccccEEeCCCCc------cCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCC
Confidence 45555555444333 333 46667776665554 211 232 46778888888888888777 55 788
Q ss_pred cEEeccCCCCcccCcchhcCCCC-------cEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 455 RHLNLSRTEIKTLPESVSKLYNL-------HTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 455 ~~l~l~~~~i~~lp~~~~~l~~L-------~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
++|++++|.|+.+|. +.. +| +.|++++| .+..+|..+.++++|+.|++++|+..+.+|
T Consensus 183 ~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 183 EALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 888888888888777 544 66 88888887 666788878888888888888887444333
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.61 E-value=1e-07 Score=98.66 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=53.8
Q ss_pred cCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccC-----
Q 048774 427 KLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL----- 501 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L----- 501 (519)
.+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++| .+..+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccc
Confidence 46677777777777776665 45677777777777777766 54 67777777776 5556665 443 66
Q ss_pred --CEEEccCCCCCCCCCCC
Q 048774 502 --HHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 502 --~~l~l~~~~~l~~lP~~ 518 (519)
+.|++++|. +.++|..
T Consensus 208 ~L~~L~Ls~N~-l~~lp~~ 225 (571)
T 3cvr_A 208 TEIFFRCRENR-ITHIPEN 225 (571)
T ss_dssp CCEEEECCSSC-CCCCCGG
T ss_pred cceEEecCCCc-ceecCHH
Confidence 777777776 6677753
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.61 E-value=2e-08 Score=97.47 Aligned_cols=86 Identities=27% Similarity=0.242 Sum_probs=41.8
Q ss_pred hccCCcccEEeecCc-cccc--cCccccCCC-cCcEEeccCCC--C--cccCcchhcCCCCcEEeccCCCch-hHhHHhh
Q 048774 425 LFKLQRLRIFSLRGY-HISE--LPDSVGDLR-YLRHLNLSRTE--I--KTLPESVSKLYNLHTLLLEDCRRL-KKLCAAM 495 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~-~~~~--lp~~~~~l~-~L~~l~l~~~~--i--~~lp~~~~~l~~L~~l~l~~~~~~-~~lp~~~ 495 (519)
+..+++|+.|++++| .++. +|..+..++ +|++|++++|. + ..+|..+..+++|+.|++++|..+ ...+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 334555555555555 4442 344444455 55555555552 2 234444445555555555555322 2333445
Q ss_pred cccccCCEEEccCCC
Q 048774 496 GNLIKLHHLNNSNTD 510 (519)
Q Consensus 496 ~~l~~L~~l~l~~~~ 510 (519)
.++++|++|++++|.
T Consensus 244 ~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 244 FQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGCTTCCEEECTTCT
T ss_pred hCCCCCCEeeCCCCC
Confidence 555555555555553
No 137
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=2.8e-08 Score=101.20 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=92.4
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+.... ...++.+..+++|+.|.+..+. +.. .++ +..+++|++|++++|.+..+|+ +..+++
T Consensus 46 ~~l~~L~l~~~~---i~~l~~~~~l~~L~~L~Ls~n~------l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLG---IKSIDGVEYLNNLTQINFSNNQ------LTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSC---CCCCTTGGGCTTCCEEECCSSC------CCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCC---CccCcchhhhcCCCEEECCCCc------cCC-chh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 345555554433 3334567778888888877664 222 233 7789999999999999998877 889999
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSN 508 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 508 (519)
|++|++++|.++.+|+ +..+++|++|++++| .+..+|. ++.+++|++|++++
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN 165 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC
Confidence 9999999999988776 889999999999998 5666664 88999999999874
No 138
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=1.5e-07 Score=91.95 Aligned_cols=193 Identities=11% Similarity=0.062 Sum_probs=107.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCC-ceEEEEEcCCCCHHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD-LKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
+.++|++++++.+...+... ..+.++|+|++|+||||+|+.+++.......+. .+..++......... ....+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREKVKN 112 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC---CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHHHHH
Confidence 45789999998887665532 223378999999999999999987321111111 222333332222222 2222222
Q ss_pred hhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHhc-CCCCee
Q 048774 98 IVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKIM-GTLPAY 175 (519)
Q Consensus 98 l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~~-~~~~~~ 175 (519)
+........... .....-..++-++++|+++.........+...+.......++|+++.... +...+ .....+
T Consensus 113 ~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 113 FARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred Hhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 221111000000 00011123567999999976554444444444443344667777765432 11111 112468
Q ss_pred ecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHH
Q 048774 176 QLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 176 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
.+.+++.++....+...+.......+ ++....|++.++|.|..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGI 232 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 89999999999999887644322111 5678889999999987643
No 139
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.59 E-value=2e-08 Score=88.77 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=36.5
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-+.|+||+++++.+.+.+.. +..+.++|+|++|+|||++|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHH
Confidence 35689999998888765443 3456778999999999999999987
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=7e-08 Score=94.16 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=67.5
Q ss_pred hhhhhhccCCcccEEeecC-ccccccC-ccccCCCcCcEEeccCCCCcccCc-chhcCCCCcEEeccCCCchhHhHHhhc
Q 048774 420 SILTELFKLQRLRIFSLRG-YHISELP-DSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLHTLLLEDCRRLKKLCAAMG 496 (519)
Q Consensus 420 ~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~~l~l~~~~~~~~lp~~~~ 496 (519)
.+|. +..+.+|+.|+|++ |.++.+| ..+..|++|++|+|++|.|+.+|+ .|..+++|+.|+|++| .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 3555 67788888888885 8888776 467888888888888888885554 5788888888888887 6667776544
Q ss_pred ccccCCEEEccCCC
Q 048774 497 NLIKLHHLNNSNTD 510 (519)
Q Consensus 497 ~l~~L~~l~l~~~~ 510 (519)
...+|+.|++++|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 44448888888887
No 141
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.59 E-value=7.1e-08 Score=105.68 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=92.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCcc--ccC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDS--VGD 450 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~--~~~ 450 (519)
..++.+.+..+..........+..+++|++|.+.++. +....|..+..+++|++|++++|.+.. +|.. +..
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~------l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK------IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC------CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc------CcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 4455566554422222223456788888888887765 445556777789999999999998884 5554 888
Q ss_pred CCcCcEEeccCCCCccc--CcchhcCCCCcEEeccCCCchhHhHHhhccc--ccCCEEEccCCCCCCCC
Q 048774 451 LRYLRHLNLSRTEIKTL--PESVSKLYNLHTLLLEDCRRLKKLCAAMGNL--IKLHHLNNSNTDSLEEM 515 (519)
Q Consensus 451 l~~L~~l~l~~~~i~~l--p~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l--~~L~~l~l~~~~~l~~l 515 (519)
+++|++|++++|.++.+ +..++++++|++|++++|......|..+..+ ++|+.|++++|...+..
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 99999999999988854 3468889999999999885444445555554 56666666666533333
No 142
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.58 E-value=7.7e-08 Score=102.91 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCcccccc-CccccCCCcCcEEeccCCCCcccCc-chhcCCC
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTEIKTLPE-SVSKLYN 476 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~ 476 (519)
++++.|.+..+. +....+..+..+++|++|++++|.+..+ |..++.+++|++|++++|.++.+|+ .+..+++
T Consensus 25 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 567888776664 3333344577999999999999999966 5678899999999999999998887 5999999
Q ss_pred CcEEeccCCCchhHhH-HhhcccccCCEEEccCCCCCCCCC
Q 048774 477 LHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 477 L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++| .+..+| ..++++++|++|++++|...+..|
T Consensus 99 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 99 LTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp CSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred CCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCc
Confidence 999999998 455555 569999999999999998433333
No 143
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=4.2e-08 Score=90.25 Aligned_cols=173 Identities=16% Similarity=0.040 Sum_probs=96.8
Q ss_pred cccccce---eeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHH
Q 048774 19 DVFPCRK---QAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTIL 95 (519)
Q Consensus 19 ~~f~gR~---~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 95 (519)
+.|+|++ +.+..+..... ....+.++|+|++|+|||++|+.+++ ........+.++++......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~-------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI-------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS--------
T ss_pred hhccCCCCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH--------
Confidence 4466633 44444433222 12457788999999999999999987 44433345666665432110
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccc--hhhhccccCCC-CCC-cEEEEEecchh-------
Q 048774 96 TSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDD--WVDFSRPLGAS-AQG-SKIIVSTRNHE------- 164 (519)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~~-~~ilvTsr~~~------- 164 (519)
+. .. + ..+ .++.+|||||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 --~~-----------~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~ 156 (242)
T 3bos_A 95 --ST-----------AL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVL 156 (242)
T ss_dssp --CG-----------GG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCC
T ss_pred --HH-----------HH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhh
Confidence 00 00 0 011 345689999997543322 22222222111 112 24777776321
Q ss_pred --HHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 165 --VAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 165 --~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
+...+.....+.+.+++.++..+++...+..... ..+ ++....+++.++|.+..+..+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHH
Confidence 1222211256899999999999999887643222 111 566778889999988665543
No 144
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.56 E-value=9.1e-08 Score=94.82 Aligned_cols=132 Identities=19% Similarity=0.183 Sum_probs=97.9
Q ss_pred CCeEEEEEEecCCccchh--h-hhhhcCCCCceecccccccCCCCCCCch----hhh-hhccCCcccEEeecCccc----
Q 048774 374 RNLCHLSYIRGDCDGVQR--F-EKLYDIQHLRTFLPVMLSNSLDGYLAPS----ILT-ELFKLQRLRIFSLRGYHI---- 441 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~--~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~-~~~~l~~L~~L~l~~~~~---- 441 (519)
..++.+.+..+....... + ..+..+++|+.|.+..+. +... ..+ .+..+++|++|++++|.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC------CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 345555555544432211 1 345678889988887765 3321 333 677999999999999998
Q ss_pred -cccCccccCCCcCcEEeccCCCCcc-----cCcchh--cCCCCcEEeccCCCchh----HhHHhh-cccccCCEEEccC
Q 048774 442 -SELPDSVGDLRYLRHLNLSRTEIKT-----LPESVS--KLYNLHTLLLEDCRRLK----KLCAAM-GNLIKLHHLNNSN 508 (519)
Q Consensus 442 -~~lp~~~~~l~~L~~l~l~~~~i~~-----lp~~~~--~l~~L~~l~l~~~~~~~----~lp~~~-~~l~~L~~l~l~~ 508 (519)
..+|..+..+++|++|++++|.++. +|..+. ++++|+.|++++|.... .+|..+ .++++|++|++++
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 5678888999999999999999973 466664 48999999999995444 388877 6789999999999
Q ss_pred CCC
Q 048774 509 TDS 511 (519)
Q Consensus 509 ~~~ 511 (519)
|..
T Consensus 313 N~l 315 (386)
T 2ca6_A 313 NRF 315 (386)
T ss_dssp SBS
T ss_pred CcC
Confidence 983
No 145
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.54 E-value=3.3e-07 Score=93.19 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=54.0
Q ss_pred hccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEE
Q 048774 425 LFKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHL 504 (519)
Q Consensus 425 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l 504 (519)
+..+++|+.|++++|.+..+++ +..+++|+.|++++|.++..++ +..+++|+.|++++| .+..++ .+.++++|+.|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L 358 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWL 358 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEE
T ss_pred ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCch-hhccCCCCCEE
Confidence 4466666666666666665544 5666677777777776665544 566777777777776 444443 46677777777
Q ss_pred EccCCC
Q 048774 505 NNSNTD 510 (519)
Q Consensus 505 ~l~~~~ 510 (519)
++++|.
T Consensus 359 ~l~~n~ 364 (466)
T 1o6v_A 359 SAGHNQ 364 (466)
T ss_dssp ECCSSC
T ss_pred eCCCCc
Confidence 777776
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.2e-07 Score=92.58 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=72.1
Q ss_pred EEeecCc-cccccCccccCCCcCcEEeccC-CCCcccC-cchhcCCCCcEEeccCCCchhHh-HHhhcccccCCEEEccC
Q 048774 433 IFSLRGY-HISELPDSVGDLRYLRHLNLSR-TEIKTLP-ESVSKLYNLHTLLLEDCRRLKKL-CAAMGNLIKLHHLNNSN 508 (519)
Q Consensus 433 ~L~l~~~-~~~~lp~~~~~l~~L~~l~l~~-~~i~~lp-~~~~~l~~L~~l~l~~~~~~~~l-p~~~~~l~~L~~l~l~~ 508 (519)
.++++++ .++.+|. +..+.+|+.|+|++ |.++.+| ..|..|++|+.|+|++| .+..+ |..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4588887 8999999 99999999999996 9999777 46899999999999999 55555 45689999999999999
Q ss_pred CCCCCCCCCC
Q 048774 509 TDSLEEMPVG 518 (519)
Q Consensus 509 ~~~l~~lP~~ 518 (519)
|. +..+|..
T Consensus 90 N~-l~~~~~~ 98 (347)
T 2ifg_A 90 NA-LESLSWK 98 (347)
T ss_dssp SC-CSCCCST
T ss_pred Cc-cceeCHH
Confidence 98 8888864
No 147
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.51 E-value=5e-07 Score=90.68 Aligned_cols=161 Identities=15% Similarity=0.079 Sum_probs=94.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCC--ceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD--LKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+.++|+|++|+||||||+.+++ .....+. .+++++.. .+...+...+... .. ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG------KL----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------CH----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------cH----HHHHHHh
Confidence 56788999999999999999998 4444442 33444433 2333344333221 11 1233333
Q ss_pred cCCeEEEEecCccccCc--cchhhhccccCC-CCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHHHH
Q 048774 121 SGKKFLLVLDDVWNRNY--DDWVDFSRPLGA-SAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCLAI 188 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~~L 188 (519)
..++-+|+|||++.... .....+...+.. ...+..||+||... .+...+.....+.+++++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 43677999999965432 122223222211 12467888888752 2233333234688999999999999
Q ss_pred HHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 189 FAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
+.+.+.......+ ++....|++.+.|.+.-+.-
T Consensus 272 L~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHGELP----EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHH
Confidence 9887643221111 34466788888888865543
No 148
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.50 E-value=1.9e-07 Score=91.13 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=44.8
Q ss_pred cCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCCCCCCCCCC
Q 048774 453 YLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 453 ~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~~l~~lP~~ 518 (519)
.++.|++++|.|+.+|.......+|+.+++++|..+..+|.. |..+++|+.|++++|. +.++|..
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~ 220 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY 220 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh
Confidence 466677777777777766666666777777765567777653 5677777777777776 7777653
No 149
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.46 E-value=1.7e-07 Score=92.25 Aligned_cols=195 Identities=14% Similarity=0.033 Sum_probs=102.2
Q ss_pred cccccceeeeEee---cCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc----CCCCHHHHH
Q 048774 19 DVFPCRKQAFIWA---ASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS----DDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l---~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~~ 91 (519)
+.|+|+++....+ ...... .....+.++|+|++|+|||++|+.+++ ....... .+.+... .........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~--~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIRE-GKIAGRAVLIAGQPGTGKTAIAMGMAQ--ALGPDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHT-TCCTTCEEEEEESTTSSHHHHHHHHHH--HHCSSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCCCHHHHHHHHHH--HhcccCC-cccccchhhhhcccchhHHH
Confidence 4688999885543 221221 111236788999999999999999987 3332211 1222211 112333333
Q ss_pred HHHHHHhhccC--------------------C--------C-CCCCHHHHHHHHHHHh-----cCC----eEEEEecCcc
Q 048774 92 KTILTSIVTHQ--------------------N--------V-DNLNLNKLQEELNKQL-----SGK----KFLLVLDDVW 133 (519)
Q Consensus 92 ~~il~~l~~~~--------------------~--------~-~~~~~~~~~~~l~~~l-----~~~----~~LlvlDdv~ 133 (519)
...+....... . . .....+.....+.... .++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33333311100 0 0 0001122222222211 133 4599999997
Q ss_pred ccCccchhhhccccCCCCCCcEEEEEecc-----------------hhHHHhcCCCCeeecCCCChhhHHHHHHHhhhCC
Q 048774 134 NRNYDDWVDFSRPLGASAQGSKIIVSTRN-----------------HEVAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGT 196 (519)
Q Consensus 134 ~~~~~~~~~l~~~l~~~~~~~~ilvTsr~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 196 (519)
.........+...+...... .+++++.. +.+..+ ...+.+.+++.++..+++...+...
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHc
Confidence 76554444455444433223 34444431 122222 2457899999999999998776543
Q ss_pred CCCCCCchHHHHHHHHHHhhC-CCchhHHH
Q 048774 197 RDFSSHMSLEEIGRKIVTKCD-GLPLAAQT 225 (519)
Q Consensus 197 ~~~~~~~~~~~~~~~i~~~~~-g~PLal~~ 225 (519)
..... ++....+++.+. |.|..+..
T Consensus 276 ~~~~~----~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 276 DVEMS----EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp TCCBC----HHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCC----HHHHHHHHHHhcCCCHHHHHH
Confidence 22111 566778888887 77765443
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=4.4e-07 Score=88.68 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=102.0
Q ss_pred cccccceeeeEeecCCC-CCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceE--------------------
Q 048774 19 DVFPCRKQAFIWAASPE-ETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKA-------------------- 77 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~-~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-------------------- 77 (519)
+.++|+++.++.|.... .. +..+. ++|+|++|+||||+|+.+++. +...-.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~--~~~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP--RDLPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT--TCCCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccccceeeee
Confidence 44789999999888766 32 22233 789999999999999887761 111111111
Q ss_pred ----EEEEcCCC-C--HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCC
Q 048774 78 ----WTCVSDDF-D--VIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS 150 (519)
Q Consensus 78 ----wv~~~~~~-~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~ 150 (519)
++...... . .....+.++..+...... .... .+.. +..++-++|+|+++..+......+...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 11111100 0 000122222222111100 0000 0000 2346779999999765544444455544433
Q ss_pred CCCcEEEEEecchh-HHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 151 AQGSKIIVSTRNHE-VAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 151 ~~~~~ilvTsr~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
..++.+|++|.+.. +... ......+++.+++.++....+...+...+...+. ++.+..|++.++|.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHH
Confidence 45677888776532 2111 1223678999999999999998776432211110 24567788999998865443
No 151
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.44 E-value=1.3e-07 Score=91.69 Aligned_cols=133 Identities=22% Similarity=0.222 Sum_probs=104.4
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCc-ccc--ccCccccC
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGY-HIS--ELPDSVGD 450 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~ 450 (519)
..++.+.+..+..........+..+++|+.|.+.++. +....+..+..+++|++|++++| .++ .+|..+..
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 4555665554433222233456778999999887775 56677888889999999999999 677 36777888
Q ss_pred CCcCcEEeccCC-CCcc--cCcchhcCC-CCcEEeccCCC-ch--hHhHHhhcccccCCEEEccCCCCC
Q 048774 451 LRYLRHLNLSRT-EIKT--LPESVSKLY-NLHTLLLEDCR-RL--KKLCAAMGNLIKLHHLNNSNTDSL 512 (519)
Q Consensus 451 l~~L~~l~l~~~-~i~~--lp~~~~~l~-~L~~l~l~~~~-~~--~~lp~~~~~l~~L~~l~l~~~~~l 512 (519)
+++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|..+.++++|++|++++|..+
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence 999999999999 8883 678889999 99999999984 23 567888889999999999999843
No 152
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.44 E-value=2.2e-07 Score=97.35 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEcc
Q 048774 428 LQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNS 507 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~ 507 (519)
+++|+.|++++|.++.+| ..+++|++|++++|.++.+|. .+++|+.|++++| .+..+|..+.++++|+.|+++
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 478999999999998887 456889999999999998887 5688999999998 666888889999999999999
Q ss_pred CCCCC
Q 048774 508 NTDSL 512 (519)
Q Consensus 508 ~~~~l 512 (519)
+|+..
T Consensus 293 ~N~l~ 297 (622)
T 3g06_A 293 GNPLS 297 (622)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99843
No 153
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.44 E-value=4.3e-07 Score=91.90 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=59.7
Q ss_pred CCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccccCccccCCCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISELPDSVGDLRY 453 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 453 (519)
..++.+.+..+.... ++.+..+++|+.|.+..+. +. .+|. ...+|++|++++|.++.+| .++.+++
T Consensus 131 ~~L~~L~L~~n~l~~---lp~~~~l~~L~~L~l~~N~------l~-~lp~---~~~~L~~L~L~~n~l~~l~-~~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNS------LK-KLPD---LPPSLEFIAAGNNQLEELP-ELQNLPF 196 (454)
T ss_dssp TTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSC------CS-CCCC---CCTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CCCCEEECcCCCCCC---CcccCCCCCCCEEECCCCc------Cc-ccCC---CcccccEEECcCCcCCcCc-cccCCCC
Confidence 345555554443332 3456666667766665543 11 1111 1235555555555555554 3555555
Q ss_pred CcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCCCCCCCCC
Q 048774 454 LRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNTDSLEEMP 516 (519)
Q Consensus 454 L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~~~l~~lP 516 (519)
|++|++++|.++.+|... .+|+.|++++| .+..+| .++.+++|++|++++|. +..+|
T Consensus 197 L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~ 253 (454)
T 1jl5_A 197 LTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNL-LKTLP 253 (454)
T ss_dssp CCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSCC
T ss_pred CCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCc-CCccc
Confidence 555555555555444322 24555555554 333444 24455555555555544 34443
No 154
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.42 E-value=3.1e-07 Score=90.95 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCceecccccccCCCCCCC-chhh---hhhccCCcccEEeecCcccc------ccCccccCCCcCcEEeccCCCC----
Q 048774 399 QHLRTFLPVMLSNSLDGYLA-PSIL---TELFKLQRLRIFSLRGYHIS------ELPDSVGDLRYLRHLNLSRTEI---- 464 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~------~lp~~~~~l~~L~~l~l~~~~i---- 464 (519)
++|+.|.+..+. +. ...+ ..+..+++|+.|++++|.+. ..|..+..+++|++|++++|.+
T Consensus 159 ~~L~~L~L~~n~------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g 232 (386)
T 2ca6_A 159 PPLRSIICGRNR------LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232 (386)
T ss_dssp CCCCEEECCSSC------CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred CCCcEEECCCCC------CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH
Confidence 667766665554 22 2222 34557778888888888776 2333677788888888888887
Q ss_pred -cccCcchhcCCCCcEEeccCCCchhH----hHHhh--cccccCCEEEccCCCCCCC
Q 048774 465 -KTLPESVSKLYNLHTLLLEDCRRLKK----LCAAM--GNLIKLHHLNNSNTDSLEE 514 (519)
Q Consensus 465 -~~lp~~~~~l~~L~~l~l~~~~~~~~----lp~~~--~~l~~L~~l~l~~~~~l~~ 514 (519)
..+|..+..+++|+.|++++|..... +|..+ +.+++|++|++++|. ++.
T Consensus 233 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence 45677777888888888888743332 45555 347888888888887 443
No 155
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.41 E-value=1.2e-07 Score=95.86 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=47.7
Q ss_pred CcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccC
Q 048774 429 QRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSN 508 (519)
Q Consensus 429 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~ 508 (519)
++|+.|++++|.++.+|.. +.+|++|++++|.++.+|.. .++|++|++++| .+..+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 4566666666666655542 24455555555555544431 146777777776 444566 477777777777777
Q ss_pred CCCCCCCCC
Q 048774 509 TDSLEEMPV 517 (519)
Q Consensus 509 ~~~l~~lP~ 517 (519)
|. +..+|.
T Consensus 163 N~-l~~lp~ 170 (454)
T 1jl5_A 163 NS-LKKLPD 170 (454)
T ss_dssp SC-CSCCCC
T ss_pred Cc-CcccCC
Confidence 76 556664
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.40 E-value=5.3e-06 Score=80.17 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=65.3
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHh-cCCCCeeecCCCChhhHHHHHHHhhhCCCCC
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKI-MGTLPAYQLKKLSYNDCLAIFAQHSLGTRDF 199 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 199 (519)
+++-++|+|+++.........+...+....+++.+|++|.+.. +... ......+.+.+++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~-- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T-- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--
Confidence 4577999999987665555556666655555777777776542 2222 1223578999999999999988764 1
Q ss_pred CCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 200 SSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 200 ~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
.+ ++.+..+++.++|.|.....+
T Consensus 182 ~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 11 456678999999999755443
No 157
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.40 E-value=4.8e-07 Score=87.83 Aligned_cols=175 Identities=15% Similarity=0.054 Sum_probs=99.5
Q ss_pred cccccceeeeEeecCCCCCC--CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETM--PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+|+++.++.+...+... .......++|+|++|+|||++|+.+++ ..... .+.+++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~--------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKS--------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSH---------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccch---------
Confidence 45889999887776544322 123445678999999999999999976 33222 223333222111
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCC------------------CCCcEEEE
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS------------------AQGSKIIV 158 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~~~~ilv 158 (519)
......+.. ..++.+|+||+++.........+...+... .++..+|.
T Consensus 95 -------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 95 -------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp -------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred -------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111111 235678999999765433333332222111 12345665
Q ss_pred EecchhH-HHh-cC-CCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHHH
Q 048774 159 STRNHEV-AKI-MG-TLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQTL 226 (519)
Q Consensus 159 Tsr~~~~-~~~-~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 226 (519)
+|..... ... .. ....+.+.+++.++...++.+.+...... -.++....+++.+.|+|..+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT----CEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE----ECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHCcCHHHHHHH
Confidence 5554321 111 11 12578999999999999998776432211 11566788889999999655443
No 158
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.39 E-value=9e-07 Score=92.70 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred CCcccEEeecCccccccCccccCCCcCcEEeccCCCCcccCc
Q 048774 428 LQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIKTLPE 469 (519)
Q Consensus 428 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~~lp~ 469 (519)
+++|+.|++++|.++.+|.. +++|++|++++|.++.+|.
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC
Confidence 34455555555555444432 2455555555555554443
No 159
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=3.4e-07 Score=94.08 Aligned_cols=194 Identities=13% Similarity=0.093 Sum_probs=100.8
Q ss_pred cccccceeeeEeecCCCCCC--------------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 19 DVFPCRKQAFIWAASPEETM--------------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--------------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
+.++|++++++.|...+... ..+..+.++|+|++|+|||++|+.+++ .. .+ .++.++....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~--~l--~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ--EL--GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH--HT--TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH--Hc--CC-CEEEEeCCCc
Confidence 44789988777665543321 112346788999999999999999987 33 11 2333444333
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccc---hhhhccccCCCCCCcEEEEEec
Q 048774 85 FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDD---WVDFSRPLGASAQGSKIIVSTR 161 (519)
Q Consensus 85 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~---~~~l~~~l~~~~~~~~ilvTsr 161 (519)
.... .....+........... -.+.... ......++.+|+||+++...... +..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhccccHHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 3322 22222222111110000 0000000 00123567899999997543211 2233332222 2344565554
Q ss_pred chh---HHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHHh
Q 048774 162 NHE---VAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTLG 227 (519)
Q Consensus 162 ~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 227 (519)
... +.........+.+.+++.++..+++...+........ ++....|++.++|.+ .++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 422 2221222346889999999999988776543222122 345677888999855 4455443
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.33 E-value=4.9e-06 Score=80.11 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=87.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+||||||+.+++ .....-..+++++.. .+...+...+... ..+.. ...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~------~~~~~~~~~~~~~------~~~~~----~~~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD------DFAQAMVEHLKKG------TINEF----RNMYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH------HHHHHHHHHHHHT------CHHHH----HHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH------HHHHHHHHHHHcC------cHHHH----HHHhc
Confidence 456788999999999999999987 333221234455432 2233333333221 11222 22222
Q ss_pred CCeEEEEecCccccCc--cchhhhccccCC-CCCCcEEEEEecch---------hHHHhcCCCCeeecCCCChhhHHHHH
Q 048774 122 GKKFLLVLDDVWNRNY--DDWVDFSRPLGA-SAQGSKIIVSTRNH---------EVAKIMGTLPAYQLKKLSYNDCLAIF 189 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~~~~ilvTsr~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~ 189 (519)
++.+|+||+++.... .....+...+.. ...+..|++|+... .+...+.....+.+++ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 366999999965432 112222222211 12356788887642 1222332234688999 999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 190 AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
...+...... .+ ++....+++.+ |....
T Consensus 176 ~~~~~~~~~~-l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 176 KEKLKEFNLE-LR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHTTCC-CC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHHhcCCC-CC---HHHHHHHHHhC-CCHHH
Confidence 8876533221 11 55677788888 77654
No 161
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.31 E-value=1.9e-07 Score=82.04 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=36.2
Q ss_pred ccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 18 HDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-+.|+||+++++.+...+.. ...+.++|+|++|+|||++|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHH
Confidence 35689999998888765442 3456778999999999999999887
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=1.3e-06 Score=87.45 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=94.9
Q ss_pred cccccceeee---EeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHH
Q 048774 19 DVFPCRKQAF---IWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTI 94 (519)
Q Consensus 19 ~~f~gR~~~~---~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 94 (519)
+.++|.+.++ ..|...+. .+..+.++|+|++|+||||+|+.+++ ..... ++.+... ..... .+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~---~~~~~~vLL~GppGtGKTtlAr~ia~--~~~~~-----f~~l~a~~~~~~~-ir~~ 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIE---AGHLHSMILWGPPGTGKTTLAEVIAR--YANAD-----VERISAVTSGVKE-IREA 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHH---HTCCCEEEEECSTTSSHHHHHHHHHH--HTTCE-----EEEEETTTCCHHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHH---cCCCcEEEEECCCCCcHHHHHHHHHH--HhCCC-----eEEEEeccCCHHH-HHHH
Confidence 4477888776 33333222 12335688999999999999999987 33222 2222222 12221 1111
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEE-Eecchh--H-HHhcC
Q 048774 95 LTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIV-STRNHE--V-AKIMG 170 (519)
Q Consensus 95 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilv-Tsr~~~--~-~~~~~ 170 (519)
+... ......+++.+|+||+++.........+...+... ...+|. ||.+.. + .....
T Consensus 95 ~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhC
Confidence 1110 00111356889999999765544444444444431 233443 433432 1 11112
Q ss_pred CCCeeecCCCChhhHHHHHHHhhhCCCCC---CCCchHHHHHHHHHHhhCCCchhHH
Q 048774 171 TLPAYQLKKLSYNDCLAIFAQHSLGTRDF---SSHMSLEEIGRKIVTKCDGLPLAAQ 224 (519)
Q Consensus 171 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLal~ 224 (519)
....+.+.+++.++...++.+.+...... ....-.++....+++.++|.+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 23578899999999999998876542110 0011125677888888999886544
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=6.1e-07 Score=84.81 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=94.3
Q ss_pred cccccceeeeEeecCCCCCC----------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHH
Q 048774 19 DVFPCRKQAFIWAASPEETM----------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVI 88 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~----------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 88 (519)
+.++|.++.++.|...+... .-...+.++|+|++|+|||++|+.+++ ..... .+.++...-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHHH--
Confidence 45678888877776544210 012456688999999999999999987 33222 22222211100
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCcccc-----------Cc---cchhhhccccC--CCCC
Q 048774 89 RLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNR-----------NY---DDWVDFSRPLG--ASAQ 152 (519)
Q Consensus 89 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~---~~~~~l~~~l~--~~~~ 152 (519)
.. ...........+.......+.+|+||+++.. .. ..+..+...+. ....
T Consensus 90 ------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 ------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp ------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred ------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00 0011111222233333456789999999542 10 11111221111 1223
Q ss_pred CcEEEEEecchhHHH-h-c---CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC-chhHH
Q 048774 153 GSKIIVSTRNHEVAK-I-M---GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL-PLAAQ 224 (519)
Q Consensus 153 ~~~ilvTsr~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~ 224 (519)
+..||.||....... . . .....+.+...+.++..+++...+..... ... .....+++.+.|. |-.|.
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~----~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AED----VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTT----CCHHHHHHHCTTCCHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCc----CCHHHHHHHcCCCCHHHHH
Confidence 566777776542211 1 1 11246889999999999999887643322 111 1245567777764 43443
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.23 E-value=1.5e-06 Score=81.39 Aligned_cols=183 Identities=11% Similarity=0.094 Sum_probs=91.5
Q ss_pred ehhhhhhccccccccceeeeEeecC-------CCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 9 RSDALEAAAHDVFPCRKQAFIWAAS-------PEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 9 ~~~~l~~~~~~~f~gR~~~~~~l~~-------~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
+.+.++....+.++|+...+..+.. .+........+.++|+|++|+|||++|+.+++ .... . .+.++.
T Consensus 23 ~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~--~~~~--~-~~~i~~ 97 (272)
T 1d2n_A 23 NQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNF--P-FIKICS 97 (272)
T ss_dssp --CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTC--S-EEEEEC
T ss_pred CHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH--HhCC--C-EEEEeC
Confidence 3344455455567777766544433 11111123445677999999999999999987 3222 2 222222
Q ss_pred cCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCcccc------C---ccc-hhhhccccCC--
Q 048774 82 SDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNR------N---YDD-WVDFSRPLGA-- 149 (519)
Q Consensus 82 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~---~~~-~~~l~~~l~~-- 149 (519)
... +.... ...........+......++.+|+||+++.. . ... ...+...+..
T Consensus 98 ~~~-------------~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~ 162 (272)
T 1d2n_A 98 PDK-------------MIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP 162 (272)
T ss_dssp GGG-------------CTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC
T ss_pred HHH-------------hcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc
Confidence 210 00000 0000011222233333467889999998542 1 111 1222222221
Q ss_pred -CCCCcEEEEEecchhHHHh--c-CC-CCeeecCCCCh-hhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 150 -SAQGSKIIVSTRNHEVAKI--M-GT-LPAYQLKKLSY-NDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 150 -~~~~~~ilvTsr~~~~~~~--~-~~-~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.+....||.||........ . .. ...+.+++++. ++...++.+.. ..+ ++....+++.+.|.+
T Consensus 163 ~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 163 PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGKK 230 (272)
T ss_dssp STTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTSE
T ss_pred CCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCCC
Confidence 2234446667766544332 1 11 34578888887 55555555421 111 556778888888853
No 165
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.22 E-value=7.1e-07 Score=86.07 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=96.7
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
+.++|+++.++.+...+.. +..++++++.|++|+|||++|+.+++ .... .++.++.+.. . ....+..+...
T Consensus 26 ~~ivg~~~~~~~l~~~l~~--~~~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~i~~~~~-~-~~~i~~~~~~~ 96 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK--GKIPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMFVNGSDC-K-IDFVRGPLTNF 96 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT--TCCCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEEEETTTC-C-HHHHHTHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHc--CCCCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEEEccccc-C-HHHHHHHHHHH
Confidence 4578999888777655442 22446777889999999999999987 3321 2334443221 2 22222222221
Q ss_pred hccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccC-ccchhhhccccCCCCCCcEEEEEecchh-----HHHhcCCC
Q 048774 99 VTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRN-YDDWVDFSRPLGASAQGSKIIVSTRNHE-----VAKIMGTL 172 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~~~~ilvTsr~~~-----~~~~~~~~ 172 (519)
..... ..+++.++++|+++... ......+...+.....++++|+||.... +...+
T Consensus 97 ~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~--- 157 (324)
T 3u61_B 97 ASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC--- 157 (324)
T ss_dssp HHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---
T ss_pred Hhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---
Confidence 11110 12367899999997654 3333344443333334677888877543 22222
Q ss_pred CeeecCCCChhhHHHHH-------HHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 173 PAYQLKKLSYNDCLAIF-------AQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 173 ~~~~l~~L~~~ea~~L~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
..+.+.+++.++-.+++ ...+.......++ .+....+++.++|.+..
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHH
Confidence 46889999988743332 2222111111111 26677788888887764
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=4e-06 Score=81.32 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=96.0
Q ss_pred cccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-CC-ceEEEEEcCCCCHHHHHHHHHHHh
Q 048774 21 FPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FD-LKAWTCVSDDFDVIRLTKTILTSI 98 (519)
Q Consensus 21 f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~il~~l 98 (519)
++|.++.+..|...+.. +..+.++++|++|+||||+|+.+++ .+... +. .+.-++......... .+..+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~-ir~~i~~~ 100 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDV-VRNQIKDF 100 (340)
T ss_dssp CCSCHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred hcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHH-HHHHHHHH
Confidence 46777777766544332 2222378999999999999999887 32221 11 111111111111111 11111111
Q ss_pred hccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh-HHHh-cCCCCeee
Q 048774 99 VTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE-VAKI-MGTLPAYQ 176 (519)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~~~-~~~~~~~~ 176 (519)
..... .+.+.+-++|+|+++.........+...+......+++++++.... +... ......+.
T Consensus 101 ~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 101 ASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 10000 0113467899999976554344444444443344667777765432 1111 11224688
Q ss_pred cCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 177 LKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 177 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
+.+++.++..+.+...+..... ..+ ++....+++.++|.+.-
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHH
Confidence 9999999988888776533221 111 45677889999998864
No 167
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.19 E-value=6.9e-06 Score=78.92 Aligned_cols=181 Identities=13% Similarity=0.003 Sum_probs=95.9
Q ss_pred cccccceeeeEeecCCC---------CCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPE---------ETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~---------~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|.++..+.|...+ ........+.++|+|++|+|||+||+.+++ ..... .+.++.. .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchH------H
Confidence 34567777666654432 111223456778999999999999999987 33222 2222221 1
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHH-HHHHHhcCCeEEEEecCccccCcc-----------chhhhccc---cCCCCCCc
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQE-ELNKQLSGKKFLLVLDDVWNRNYD-----------DWVDFSRP---LGASAQGS 154 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~---l~~~~~~~ 154 (519)
+.... ....+.... .....-..++.+|+||+++..... ....+... +.....+.
T Consensus 87 ----l~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 87 ----LVSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp ----HHTTT-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred ----Hhhcc-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11110 011122222 222233456789999999643210 01112211 21223355
Q ss_pred EEEEEecchhH-----HHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC-chhHHHHh
Q 048774 155 KIIVSTRNHEV-----AKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL-PLAAQTLG 227 (519)
Q Consensus 155 ~ilvTsr~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 227 (519)
.||.||..... ...+ ...+.+...+.++..+++..++........ +.....|++.+.|+ +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRF--ERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHccc--CeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56656654322 2222 245778888999999999887654322111 45567888888874 44444443
No 168
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=3.4e-07 Score=76.91 Aligned_cols=114 Identities=12% Similarity=-0.016 Sum_probs=63.9
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhh
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIV 99 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 99 (519)
.++|+...+..+.+.+..... ....+.|+|++|+|||++|+.+++... +.. ...+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~-~~~v-~~~~~~~~~------------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQ-GEFV-YRELTPDNA------------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-CCSCEEEESSTTSSHHHHHHHHHHSST-TTT-SCCE-EEECCTTTS------------
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHHHhCC-ccC-CCEE-EECCCCCcc------------
Confidence 357777777666553322222 345678999999999999999987321 111 1233 666543221
Q ss_pred ccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecc
Q 048774 100 THQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
... ...+... +.-.|+||+++.........+...+.......++|.||..
T Consensus 66 -------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 -------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011 1111111 2347899999776654444555544444446778877764
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=1.3e-05 Score=74.56 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=80.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++.++|+|++|+|||++|+.+++ ..... .+.++...-.+. ............+.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV----------------IGGLGAARVRSLFKEARA 96 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS----------------STTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh----------------ccChhHHHHHHHHHHHHh
Confidence 456678999999999999999987 33222 233333321110 000111122223333334
Q ss_pred CCeEEEEecCccccC------------c---cchhhhccccCC--CCCCcEEEEEecchhHH-Hh-c---CCCCeeecCC
Q 048774 122 GKKFLLVLDDVWNRN------------Y---DDWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KI-M---GTLPAYQLKK 179 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~------------~---~~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~-~---~~~~~~~l~~ 179 (519)
..+.+|+||+++... . ..+..+...+.. ...+..+|.||...... .. . .....+.+..
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 567899999996531 0 111122222221 12345566666543321 11 1 1124677888
Q ss_pred CChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch
Q 048774 180 LSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL 221 (519)
Q Consensus 180 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 221 (519)
.+.++..+++...+..... ..........+++.+.|++-
T Consensus 177 p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCH
T ss_pred cCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCH
Confidence 9999999998877643221 11112234678888888764
No 170
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=2e-05 Score=76.70 Aligned_cols=182 Identities=12% Similarity=0.013 Sum_probs=95.5
Q ss_pred cccccceeeeEeecCCCC---------CCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPEE---------TMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~---------~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|.++..+.|..... .......+.++|+|++|+|||+||+.+++ ..... .+.++.. .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH------H
Confidence 446788877666654321 01122345678999999999999999997 33222 2222221 1
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCcc-----------chhhhcccc---CCCCCCcE
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYD-----------DWVDFSRPL---GASAQGSK 155 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~l---~~~~~~~~ 155 (519)
+ ...+ ...........+......++.+|+||+++..... ....+...+ .....+..
T Consensus 120 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 1110 1111222222222233457899999999643211 011122111 11223455
Q ss_pred EEEEecchh-----HHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC-chhHHHHh
Q 048774 156 IIVSTRNHE-----VAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL-PLAAQTLG 227 (519)
Q Consensus 156 ilvTsr~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 227 (519)
||.||.... +.. .....+.+...+.++..+++..++........ ......|++.+.|+ +-.|..++
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 555665432 222 22356778888889889999887643321111 45577888899885 43454443
No 171
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.13 E-value=3.2e-06 Score=82.85 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCCceecccccccCCCCCCCchhhhhh----ccC-CcccEEeecCccccccCc-c----ccC-CCcCcEEeccCCCCc--
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTEL----FKL-QRLRIFSLRGYHISELPD-S----VGD-LRYLRHLNLSRTEIK-- 465 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~lp~-~----~~~-l~~L~~l~l~~~~i~-- 465 (519)
++|+.|.+..+. +....+..+ ..+ ++|+.|++++|.+...+. . +.. .++|++|++++|.++
T Consensus 80 ~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 80 ANVTSLNLSGNF------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp TTCCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred CCccEEECcCCc------CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 566666655554 222222222 233 677777777777665432 2 223 246777777777766
Q ss_pred ---ccCcchhcCC-CCcEEeccCCCchhHhHH----hhccc-ccCCEEEccCCCCCCC
Q 048774 466 ---TLPESVSKLY-NLHTLLLEDCRRLKKLCA----AMGNL-IKLHHLNNSNTDSLEE 514 (519)
Q Consensus 466 ---~lp~~~~~l~-~L~~l~l~~~~~~~~lp~----~~~~l-~~L~~l~l~~~~~l~~ 514 (519)
.++..+..++ +|++|++++|......+. .+..+ ++|++|++++|. ++.
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence 3333444554 677777777733222332 23334 477777777776 443
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=7e-05 Score=71.73 Aligned_cols=160 Identities=16% Similarity=0.079 Sum_probs=84.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+||+.+++ .... ...+.++...-. .. ................-.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~--~~~~--~~~~~i~~~~l~--------------~~--~~g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT--EANN--STFFSISSSDLV--------------SK--WLGESEKLVKNLFQLARE 103 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH--HTTS--CEEEEEECCSSC--------------CS--SCCSCHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH--HcCC--CcEEEEEhHHHH--------------hh--hhhHHHHHHHHHHHHHHh
Confidence 446788999999999999999987 3211 112223332111 00 011122222222223334
Q ss_pred CCeEEEEecCccccCc-------cc----hhhhcccc---CCCCCCcEEEEEecchh-----HHHhcCCCCeeecCCCCh
Q 048774 122 GKKFLLVLDDVWNRNY-------DD----WVDFSRPL---GASAQGSKIIVSTRNHE-----VAKIMGTLPAYQLKKLSY 182 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~-------~~----~~~l~~~l---~~~~~~~~ilvTsr~~~-----~~~~~~~~~~~~l~~L~~ 182 (519)
.++.+|+||+++.... .. ...+...+ .....+..||.||.... +.. .....+.+...+.
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~ 181 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEP 181 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCH
Confidence 5788999999964311 00 11111111 11223455555554331 222 1234677888888
Q ss_pred hhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHHh
Q 048774 183 NDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTLG 227 (519)
Q Consensus 183 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 227 (519)
++..+++..++....... .+.....|++.+.|+. -.|..++
T Consensus 182 ~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSL----TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHHHTTCCBCC----CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888899988764322111 1456778999998874 3455544
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.10 E-value=1.3e-05 Score=78.19 Aligned_cols=183 Identities=12% Similarity=-0.032 Sum_probs=95.9
Q ss_pred cccccceeeeEeecCCCCC---------CCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPEET---------MPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~---------~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|.++.++.|...+.. ......+.++|+|++|+|||++|+.+++ .... ..+.+++..-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhc---
Confidence 4467888877776543321 0123456788999999999999999987 3222 223344332110
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHH-HHHHhcCCeEEEEecCccccCc-----------cchhhhccccC----CCCCC
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEE-LNKQLSGKKFLLVLDDVWNRNY-----------DDWVDFSRPLG----ASAQG 153 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~----~~~~~ 153 (519)
. .....+..... +......++.+|+||+++.... .....+...+. ....+
T Consensus 156 -----------~---~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -----------K---WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -----------S---STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -----------c---ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 00011111222 2222235678999999953211 00112222221 11234
Q ss_pred cEEEEEecchh-HHHh-c-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC-chhHHHHh
Q 048774 154 SKIIVSTRNHE-VAKI-M-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL-PLAAQTLG 227 (519)
Q Consensus 154 ~~ilvTsr~~~-~~~~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~ 227 (519)
..||.||.... +... . .....+.+...+.++..+++...+........ ++....|++.+.|+ +-.|..++
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665432 1111 1 11235778888888888888876643221111 45677888888884 44555543
No 174
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.10 E-value=4.4e-06 Score=81.39 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=76.6
Q ss_pred cCCCeEEEEEEecCCccchhhhhhhcCCCCceecccccccCCCCCCCchhhhh--------------------------h
Q 048774 372 FSRNLCHLSYIRGDCDGVQRFEKLYDIQHLRTFLPVMLSNSLDGYLAPSILTE--------------------------L 425 (519)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--------------------------~ 425 (519)
.+..+..+.+..+....... ..+..+++|+.|.+..+. +...++.. +
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~------i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQND------VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp CCTTCSEEEEESCCCSEECT-TSSTTCTTCCEEEEECCT------TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred cCCCCCEEEccCCcCCCcCH-HHHcCCCCCCEEECcCCC------CCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 34556667766665444321 235667777777665553 11222222 2
Q ss_pred ccCCcccEEeecCccccccCc-cccCCCcCcEEeccC-CCCcccCc-chhcCC-CCcEEeccCCCchhHhHHhhcccccC
Q 048774 426 FKLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSR-TEIKTLPE-SVSKLY-NLHTLLLEDCRRLKKLCAAMGNLIKL 501 (519)
Q Consensus 426 ~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~-~~i~~lp~-~~~~l~-~L~~l~l~~~~~~~~lp~~~~~l~~L 501 (519)
..+++|++|++++|.+..+|+ .......+..+++.+ +.+..+|. .+..+. .++.|++++| .+..+|.......+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccch
Confidence 245555555555555554432 222333344444432 33444443 233333 4777888877 667777776677788
Q ss_pred CEEEccCCCCCCCCCCC
Q 048774 502 HHLNNSNTDSLEEMPVG 518 (519)
Q Consensus 502 ~~l~l~~~~~l~~lP~~ 518 (519)
+.+++++|+.++++|..
T Consensus 180 ~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 180 DELNLSDNNNLEELPND 196 (350)
T ss_dssp EEEECTTCTTCCCCCTT
T ss_pred hHHhhccCCcccCCCHH
Confidence 88888877668888763
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.09 E-value=2.2e-05 Score=74.92 Aligned_cols=156 Identities=14% Similarity=0.079 Sum_probs=84.7
Q ss_pred cccccceeeeEeecCCCCC------------CCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCC
Q 048774 19 DVFPCRKQAFIWAASPEET------------MPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDD 84 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~------------~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~ 84 (519)
..++|.++..+.+...... .+......++|+|++|+|||++|+.+++ ..... ....-++.+...
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGG
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHH
Confidence 3577888877766532111 1123445688999999999999998887 33221 111122333211
Q ss_pred CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCcccc---------CccchhhhccccCCCCCCcE
Q 048774 85 FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNR---------NYDDWVDFSRPLGASAQGSK 155 (519)
Q Consensus 85 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~~~~ 155 (519)
.+.... ...........+... ++.+|+||+++.. .......+...+.....+..
T Consensus 109 ------------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ------------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ------------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ------------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 000000 011111122222222 3459999999743 22233344444444445677
Q ss_pred EEEEecchhH----------HHhcCCCCeeecCCCChhhHHHHHHHhhhC
Q 048774 156 IIVSTRNHEV----------AKIMGTLPAYQLKKLSYNDCLAIFAQHSLG 195 (519)
Q Consensus 156 ilvTsr~~~~----------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 195 (519)
+|+||..... ...+ ...+.+++++.++...++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888764322 2222 256889999999999999877643
No 176
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=5.1e-05 Score=74.94 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=94.1
Q ss_pred cccccceeeeEeecCCCC---------CCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPEE---------TMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~---------~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|++..++.|...+. .......+.++|+|++|+|||++|+.+++ .... ..+.+++..-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~---~~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNA---TFFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcC---cEEEeeHHHhhc--c
Confidence 346798887777765331 11122356788999999999999999986 3222 222333322111 0
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCc-----------cchhhhcccc---CC-CCCCc
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY-----------DDWVDFSRPL---GA-SAQGS 154 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l---~~-~~~~~ 154 (519)
. ...........+...-...+.+|+||+++.... .....+...+ .. .....
T Consensus 188 ~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 001111122222222234668999999964310 0011111111 11 12244
Q ss_pred EEEEEecchh-HHHh-cCC-CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHHh
Q 048774 155 KIIVSTRNHE-VAKI-MGT-LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTLG 227 (519)
Q Consensus 155 ~ilvTsr~~~-~~~~-~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~~ 227 (519)
.||.||.... +... ... ...+.+...+.++..+++...+........ ++....+++.+.|+.- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555555432 1111 111 235778888999999999877643222111 4567788888888654 554443
No 177
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.01 E-value=5.3e-06 Score=81.26 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=80.7
Q ss_pred hhhhhcCC-CCceecccccccCCCCCCCchhh----hhhccCC-cccEEeecCcccccc-CccccCC-----CcCcEEec
Q 048774 392 FEKLYDIQ-HLRTFLPVMLSNSLDGYLAPSIL----TELFKLQ-RLRIFSLRGYHISEL-PDSVGDL-----RYLRHLNL 459 (519)
Q Consensus 392 ~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~l-----~~L~~l~l 459 (519)
++.+.... +++.|.+..+. +....+ ..+..++ +|+.|++++|.+... +..+..+ ++|++|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 44554444 48888887765 333333 4555788 899999999999855 4455554 89999999
Q ss_pred cCCCCcccCc-c----hhcC-CCCcEEeccCCCchhHhH-Hh----hccc-ccCCEEEccCCCCCC
Q 048774 460 SRTEIKTLPE-S----VSKL-YNLHTLLLEDCRRLKKLC-AA----MGNL-IKLHHLNNSNTDSLE 513 (519)
Q Consensus 460 ~~~~i~~lp~-~----~~~l-~~L~~l~l~~~~~~~~lp-~~----~~~l-~~L~~l~l~~~~~l~ 513 (519)
++|.++..+. . +..+ ++|++|++++|. +...+ .. +..+ ++|++|++++|. ++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~ 151 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LG 151 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GG
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CC
Confidence 9999985443 3 4445 799999999994 55433 33 3343 699999999997 54
No 178
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.00 E-value=7.7e-06 Score=82.84 Aligned_cols=110 Identities=21% Similarity=0.208 Sum_probs=62.4
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhc-cCC----cccEEeecCcccc-----ccCccccCCCcCcEEeccCCCC
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQ----RLRIFSLRGYHIS-----ELPDSVGDLRYLRHLNLSRTEI 464 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~-----~lp~~~~~l~~L~~l~l~~~~i 464 (519)
+..+++|+.|.+.++. +....+..+. .+. +|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 52 l~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 52 LRVNPALAELNLRSNE------LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHTCTTCCEEECTTCC------CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHhCCCcCEEeCCCCc------CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3445666666555443 3333333333 343 5777777777665 2355566667777777777766
Q ss_pred c-ccCcchhc-----CCCCcEEeccCCCchh----HhHHhhcccccCCEEEccCCC
Q 048774 465 K-TLPESVSK-----LYNLHTLLLEDCRRLK----KLCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 465 ~-~lp~~~~~-----l~~L~~l~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~ 510 (519)
+ ..+..+.. ..+|++|++++|.... .++..+..+++|++|++++|.
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 5 22332221 3457777777763322 245556666777777777775
No 179
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.00 E-value=8.2e-06 Score=82.63 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=86.5
Q ss_pred CCeEEEEEEecCCccchhhhhh-hcCC----CCceecccccccCCCCCCCc----hhhhhhccCCcccEEeecCcccccc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKL-YDIQ----HLRTFLPVMLSNSLDGYLAP----SILTELFKLQRLRIFSLRGYHISEL 444 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~-~~~~----~l~~l~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~l 444 (519)
..++.+.+..+...... +..+ ..++ +|+.|.+..+. +.. .++..+..+++|+.|++++|.+...
T Consensus 56 ~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 56 PALAELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCC------LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp TTCCEEECTTCCCHHHH-HHHHHHTTCSTTCCCCEEECTTSC------CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred CCcCEEeCCCCcCChHH-HHHHHHHHhhCCCceeEEEccCCC------CCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 45666666554432211 2222 2344 58888777665 332 4566677899999999999988632
Q ss_pred -Cccc-----cCCCcCcEEeccCCCCcc-----cCcchhcCCCCcEEeccCCCchhHhHHhhc-----ccccCCEEEccC
Q 048774 445 -PDSV-----GDLRYLRHLNLSRTEIKT-----LPESVSKLYNLHTLLLEDCRRLKKLCAAMG-----NLIKLHHLNNSN 508 (519)
Q Consensus 445 -p~~~-----~~l~~L~~l~l~~~~i~~-----lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~-----~l~~L~~l~l~~ 508 (519)
+..+ ...++|++|++++|.++. ++..+..+++|+.|++++|......+..+. .+++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 2222 235679999999998873 355677789999999999853333233332 356999999999
Q ss_pred CCCCCC
Q 048774 509 TDSLEE 514 (519)
Q Consensus 509 ~~~l~~ 514 (519)
|. ++.
T Consensus 209 n~-l~~ 213 (461)
T 1z7x_W 209 CG-VTS 213 (461)
T ss_dssp SC-CBT
T ss_pred CC-CcH
Confidence 97 544
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.99 E-value=1.2e-06 Score=76.47 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
....++|+|++|+||||||+.+++.......+ .+++++ ..++...+......... ...... +.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~----~~ 99 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD------TKFLKT----VL 99 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC------SHHHHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH------HHHHHH----hc
Confidence 35778899999999999999998732112222 233433 33444444333332211 122222 22
Q ss_pred CCeEEEEecCcccc--CccchhhhccccCCC-CCCcEEEEEecc
Q 048774 122 GKKFLLVLDDVWNR--NYDDWVDFSRPLGAS-AQGSKIIVSTRN 162 (519)
Q Consensus 122 ~~~~LlvlDdv~~~--~~~~~~~l~~~l~~~-~~~~~ilvTsr~ 162 (519)
++-+||||+++.. +......+...+... ..+..+|+||..
T Consensus 100 -~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 -NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4568999999632 211112222222111 136778888864
No 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.99 E-value=2.5e-06 Score=93.17 Aligned_cols=152 Identities=11% Similarity=0.071 Sum_probs=77.9
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC-------CCceEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-------FDLKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~ 91 (519)
+.++||++++..+...+.. ...+.++|+|++|+|||++|+.+++ .+... -..++.++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~---~~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~----- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR---RTKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLA----- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC---SSCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC----------
T ss_pred cccCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhc-----
Confidence 5588999999888765432 2345568999999999999999987 33221 11233343322100
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHh-c-CCeEEEEecCccccC--------ccchhhhccccCCCCCCcEEEEEec
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQL-S-GKKFLLVLDDVWNRN--------YDDWVDFSRPLGASAQGSKIIVSTR 161 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~~~~ilvTsr 161 (519)
... ...+.+.....+...+ . +++.+|+||+++... ......+...+.. .+..+|.+|.
T Consensus 240 ---------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 000 0112222222222222 2 368999999996432 1011112222211 2344555555
Q ss_pred chhHHH-----hc-CCCCeeecCCCChhhHHHHHHHh
Q 048774 162 NHEVAK-----IM-GTLPAYQLKKLSYNDCLAIFAQH 192 (519)
Q Consensus 162 ~~~~~~-----~~-~~~~~~~l~~L~~~ea~~L~~~~ 192 (519)
...... .+ .....+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443211 11 12245889999999999988643
No 182
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.96 E-value=6.6e-06 Score=83.24 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=77.0
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------C-ceEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------D-LKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~-~~~wv~~~~~~~~~~~~ 91 (519)
+.++||++++..+...+.. .....++|+|++|+|||++|+.+++ .+...+ . .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r---~~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCcHHHHHHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC---------
Confidence 4588999999988765532 2345668999999999999999987 432221 1 12222222
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhc--
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIM-- 169 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~-- 169 (519)
...... .... ....+...-...+.++++|.- ......+...+.. ...++|.+|.........
T Consensus 246 ----~~~~g~---~e~~---~~~~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ----TKYRGE---FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTT
T ss_pred ----ccccch---HHHH---HHHHHHHHHhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhc
Confidence 000000 0111 222222233356789999921 1111223333322 245566665544321111
Q ss_pred -----CCCCeeecCCCChhhHHHHHHHhh
Q 048774 170 -----GTLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 170 -----~~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
.....+.+...+.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 112468899999999999998764
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=0.0002 Score=67.71 Aligned_cols=181 Identities=12% Similarity=-0.022 Sum_probs=94.8
Q ss_pred cccccceeeeEeecCCCCC---------CCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPEET---------MPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~---------~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|.++.++.|...... ......+.++|+|++|+|||++|+.+++ .... ..+.++......
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCC---CeEEeeHHHHhh---
Confidence 4567888877776543311 1112456788999999999999999987 3322 122333322110
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHH-HHHHHHhcCCeEEEEecCccccCcc-----------chhhhc---cccCCC--CC
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQ-EELNKQLSGKKFLLVLDDVWNRNYD-----------DWVDFS---RPLGAS--AQ 152 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~---~~l~~~--~~ 152 (519)
. .....+... ..+......++.+|+||+++..... ....+. ..++.. +.
T Consensus 93 -----------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -----------K---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------S---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------c---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 011122222 2222233456789999999643210 000111 111111 12
Q ss_pred CcEEEEEecchh-----HHHhcCCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCch-hHHHH
Q 048774 153 GSKIIVSTRNHE-----VAKIMGTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPL-AAQTL 226 (519)
Q Consensus 153 ~~~ilvTsr~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 226 (519)
+..||.||.... +...+ ...+.+...+.++...++...+........ .+....+++.+.|++- .+..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 455666665432 22222 245667777788878888776533221111 4567788889999885 55444
Q ss_pred h
Q 048774 227 G 227 (519)
Q Consensus 227 ~ 227 (519)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9.1e-06 Score=77.06 Aligned_cols=132 Identities=7% Similarity=-0.053 Sum_probs=80.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCCh-hhhcCCCceEEEEEcC-CCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDD-RVQNHFDLKAWTCVSD-DFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~-~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+..+++|++|+|||++|..+.+.. ........+.+++... ...+.. .+.++....... .
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p-----------------~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP-----------------E 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC-----------------S
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc-----------------c
Confidence 4567799999999999999987621 0111122334443321 122222 222333332111 1
Q ss_pred cCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch-hHHHhcCCCCeeecCCCChhhHHHHHHHhh
Q 048774 121 SGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH-EVAKIMGTLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
.+++-++|+|+++.........+...+....+.+.+|++|.+. .+.+.+... .+++.+++.++..+.+....
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 2456799999998766555666666666555677777776543 333334344 89999999999999988765
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=8.9e-06 Score=79.74 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=77.7
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhc-----cCCcccEEeecCccccc-----cCccccCCCcCcEEeccCCCCcc
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELF-----KLQRLRIFSLRGYHISE-----LPDSVGDLRYLRHLNLSRTEIKT 466 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~l~l~~~~i~~ 466 (519)
.+++++.|.+..+. +.......+. ..++|+.|++++|.+.. ++..+...++|++|++++|.|..
T Consensus 124 ~L~~L~~L~Ls~n~------l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 124 VFLRARKLGLQLNS------LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HHHTEEEEECCSSC------CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HHHhccHhhcCCCC------CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 34567777766664 4443333332 45789999999998864 44555778889999999998863
Q ss_pred -----cCcchhcCCCCcEEeccCCCchh----HhHHhhcccccCCEEEccCCCCCC
Q 048774 467 -----LPESVSKLYNLHTLLLEDCRRLK----KLCAAMGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 467 -----lp~~~~~l~~L~~l~l~~~~~~~----~lp~~~~~l~~L~~l~l~~~~~l~ 513 (519)
++..+...++|+.|+|++|.... .++..+...++|++|++++|. ++
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~ 252 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LS 252 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CC
T ss_pred HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CC
Confidence 34556677889999999984322 345556677899999999987 54
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.89 E-value=0.0001 Score=69.87 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
..+.++|+|++|+|||+||+.+++ ..... ++.+. ...+. ..+.... .......+.....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~----~~~l~----~~~~g~~------~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----GPELL----TMWFGES------EANVREIFDKARQ 106 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC----HHHHH----HHHHTTC------TTHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE----hHHHH----hhhcCch------HHHHHHHHHHHHh
Confidence 456788999999999999999987 33222 22222 12222 2222111 1122333333334
Q ss_pred CCeEEEEecCccccCc--------------cchhhhccccCC--CCCCcEEEEEecchhHH-Hh-cC---CCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY--------------DDWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KI-MG---TLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~-~~---~~~~~~l~~L 180 (519)
..+.+++||+++.... .....+...+.. ...+..||.||...... .. .. ....+.+...
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 5789999999953110 001222222211 12355666666554221 11 11 2246788888
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
+.++-.+++......... ....+ ...++..+.|+|-+
T Consensus 187 ~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 988888888776643221 11112 23456667777644
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.88 E-value=0.00023 Score=71.44 Aligned_cols=185 Identities=14% Similarity=0.033 Sum_probs=93.1
Q ss_pred cccccceeeeEeecCCC---------CCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHH
Q 048774 19 DVFPCRKQAFIWAASPE---------ETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIR 89 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~---------~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 89 (519)
+.++|.++..+.|.... ........+.++|+|++|+|||+||+.+++ .. ...-++.+.... +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~----~~~~~~~v~~~~-l-- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EA----NNSTFFSISSSD-L-- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HC----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--Hc----CCCCEEEEeHHH-H--
Confidence 33567776666554321 111122446788999999999999999987 32 112233333321 1
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCc-----------cchhhhccccCC---CCCCcE
Q 048774 90 LTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY-----------DDWVDFSRPLGA---SAQGSK 155 (519)
Q Consensus 90 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~---~~~~~~ 155 (519)
....... .......+ +...-...+.+|+||+++.... .....+...+.. ...+..
T Consensus 205 -----~~~~~g~---~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 205 -----VSKWLGE---SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -----Hhhhcch---HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1111111 11122222 2222235688999999964311 011112222221 224555
Q ss_pred EEEEecchhH-HHh-c-CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc-hhHHHHh
Q 048774 156 IIVSTRNHEV-AKI-M-GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP-LAAQTLG 227 (519)
Q Consensus 156 ilvTsr~~~~-~~~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~ 227 (519)
||.||..... ... . .....+.+...+.++...+|..++....... .+.....|++.+.|+. -.|..++
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL----TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666654321 111 1 1224567788888888888888764322111 1455778888898854 3444443
No 188
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.86 E-value=1.1e-05 Score=76.91 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=41.1
Q ss_pred ehhhhhhccccccccceeeeEeecCCCCC-----------CCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 9 RSDALEAAAHDVFPCRKQAFIWAASPEET-----------MPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 9 ~~~~l~~~~~~~f~gR~~~~~~l~~~~~~-----------~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++.+.....+.++|+++.++.+...+.. ........++|+|++|+|||++|+.+++
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34566667777788999988877643321 0012346678999999999999999987
No 189
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.85 E-value=3.8e-05 Score=74.07 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=88.2
Q ss_pred cccccceeeeEeecCCCCCC--CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETM--PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILT 96 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~--~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 96 (519)
+.|+|++..+..+...+..+ .+.....++|+|++|+||||||+.++. .....| ...-+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~----~~~sg~~~~---------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNI----HVTSGPVLV---------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCE----EEEETTTCC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE----EEEechHhc----------
Confidence 55778777666554332211 122346788999999999999999987 332221 111111100
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCC--------C----------CCcEEE-
Q 048774 97 SIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGAS--------A----------QGSKII- 157 (519)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~--------~----------~~~~il- 157 (519)
...+.... ...+ .++.++++|+++.......+.+...+... + +...++
T Consensus 89 -----------~~~~l~~~-~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAAI-LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHHH-HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHHH-HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 01111111 1112 23346778887543321222221111000 0 112222
Q ss_pred EEecchhHHHhcCC--CCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 158 VSTRNHEVAKIMGT--LPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 158 vTsr~~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
.|++...+...... .....+++.+.++-.+++.+.+....... .++.+..|++.+.|.|..+.-
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHH
Confidence 33443322221111 12478999999999999988764322111 156788899999999975443
No 190
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.84 E-value=6.5e-06 Score=78.72 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=44.2
Q ss_pred hhhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 12 ALEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 12 ~l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
.++......++|.+..++.+...+... +..+...++|+|++|+|||++|+.+++ .....-...+.+++...
T Consensus 10 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 10 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp THHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGC
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccc
Confidence 445555667789888876665433221 111234677999999999999999987 33322223455555543
No 191
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=4.8e-06 Score=70.02 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
....++|+|+.|+|||||++.++. .....-..+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEcHH
Confidence 356888999999999999999987 332211125566544
No 192
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.78 E-value=1.9e-05 Score=70.18 Aligned_cols=36 Identities=22% Similarity=0.082 Sum_probs=27.6
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV 81 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 81 (519)
+.++|+|++|+|||+||+.+++ ........++++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 6788999999999999999997 44444445566654
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.6e-05 Score=66.78 Aligned_cols=84 Identities=17% Similarity=0.281 Sum_probs=59.5
Q ss_pred cccEEeecCcccccc-CccccCCCcCcEEeccCCC-Cc-ccCcchhcC----CCCcEEeccCCCchhHh-HHhhcccccC
Q 048774 430 RLRIFSLRGYHISEL-PDSVGDLRYLRHLNLSRTE-IK-TLPESVSKL----YNLHTLLLEDCRRLKKL-CAAMGNLIKL 501 (519)
Q Consensus 430 ~L~~L~l~~~~~~~l-p~~~~~l~~L~~l~l~~~~-i~-~lp~~~~~l----~~L~~l~l~~~~~~~~l-p~~~~~l~~L 501 (519)
.|+.||++++.++.. -..+..+++|+.|++++|. |+ .--..+..+ ++|+.|++++|..+.+- -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 588888888887743 2446778888888888875 65 333345543 36889999888766552 1346788889
Q ss_pred CEEEccCCCCCC
Q 048774 502 HHLNNSNTDSLE 513 (519)
Q Consensus 502 ~~l~l~~~~~l~ 513 (519)
++|++++|..++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999887665
No 194
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.78 E-value=9.1e-06 Score=75.73 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=29.5
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.|+|++..+..+...+..... ....++|+|++|+|||++|+.+++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHHH
Confidence 3467888776655432221111 235678999999999999999987
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=3.3e-05 Score=71.35 Aligned_cols=79 Identities=24% Similarity=0.285 Sum_probs=63.0
Q ss_pred cCCcccEEeecCccccccC---ccccCCCcCcEEeccCCCCcccCcchhcCC--CCcEEeccCCCchhHhH-------Hh
Q 048774 427 KLQRLRIFSLRGYHISELP---DSVGDLRYLRHLNLSRTEIKTLPESVSKLY--NLHTLLLEDCRRLKKLC-------AA 494 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~l~l~~~~i~~lp~~~~~l~--~L~~l~l~~~~~~~~lp-------~~ 494 (519)
++++|+.|++++|.+..++ ..+..+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 7899999999999998654 5567899999999999999866 4455555 89999999996554443 23
Q ss_pred hcccccCCEEEc
Q 048774 495 MGNLIKLHHLNN 506 (519)
Q Consensus 495 ~~~l~~L~~l~l 506 (519)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 778899999974
No 196
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.67 E-value=9e-05 Score=79.94 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=83.6
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcC------CCceEE-EEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNH------FDLKAW-TCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~------f~~~~w-v~~~~~~~~~~~~ 91 (519)
+.++||++++..+...+.. .....++|+|++|+|||++|+.+++ .+... ....++ ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~~~~~~~l------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR---RRKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSLDIGSL------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCccCCHHHHHHHHHHHhc---cCCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEEEEcHHHH-------
Confidence 4578999998888765542 2446678999999999999999887 33221 122222 111110
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHh-cCCeEEEEecCccccC--------ccchhhhccccCCCCCCcEEEEEecc
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQL-SGKKFLLVLDDVWNRN--------YDDWVDFSRPLGASAQGSKIIVSTRN 162 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~~~~ilvTsr~ 162 (519)
.... ......+.....+...+ ..++.+|+||+++... ..+...+...+.. ..+..+|.+|..
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 0000 01223333333333333 3457899999996431 1111122222222 234566666655
Q ss_pred hhHHHhcC-------CCCeeecCCCChhhHHHHHHHhh
Q 048774 163 HEVAKIMG-------TLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 163 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
........ ....+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 43321111 11357889999999888887543
No 197
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.67 E-value=4.1e-05 Score=74.98 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=79.8
Q ss_pred CCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccC-ccc-----cCCCcCcEEeccCCCCcc-----
Q 048774 399 QHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELP-DSV-----GDLRYLRHLNLSRTEIKT----- 466 (519)
Q Consensus 399 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~~-----~~l~~L~~l~l~~~~i~~----- 466 (519)
++|+.|.+..+. +.......+. .+++|+.|++++|.+...+ ..+ ...+.|+.|++++|.++.
T Consensus 101 ~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 567777776665 4454455554 6788999999999987432 222 246789999999999863
Q ss_pred cCcchhcCCCCcEEeccCCCchhH-----hHHhhcccccCCEEEccCCCCCC
Q 048774 467 LPESVSKLYNLHTLLLEDCRRLKK-----LCAAMGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 467 lp~~~~~l~~L~~l~l~~~~~~~~-----lp~~~~~l~~L~~l~l~~~~~l~ 513 (519)
++..+...++|++|+|++|. +.. ++..+...++|+.|++++|. ++
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 44556778999999999994 443 46677888999999999998 54
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.66 E-value=2.9e-06 Score=70.91 Aligned_cols=45 Identities=16% Similarity=-0.024 Sum_probs=29.9
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|+++.++.+......... ....+.|+|++|+|||++|+.+++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHH
Confidence 357877776665543322111 335577999999999999999987
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.65 E-value=3.9e-05 Score=82.67 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=77.7
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCC------C-ceEEEEEcCCCCHHHHH
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF------D-LKAWTCVSDDFDVIRLT 91 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f------~-~~~wv~~~~~~~~~~~~ 91 (519)
+.++||++++..+...+.. ....-++|+|++|+|||++|+.+++ .+.... . ..+.++.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~---~~~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~~~~~~g--------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG--------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC------------
T ss_pred CCccCchHHHHHHHHHHhC---CCCCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeEEEeccc---------
Confidence 4588999999888765532 2345678999999999999999887 332110 1 11112220
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHHHhcC-
Q 048774 92 KTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVAKIMG- 170 (519)
Q Consensus 92 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~~~~- 170 (519)
... .......+...+......++.+|++|.- . .....+...+. ....++|.+|..........
T Consensus 246 --------~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 246 --------TKY--RGEFEDRLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------ccc--cchHHHHHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000 0001111222333333467889999922 1 11122233332 22456676666544211111
Q ss_pred ------CCCeeecCCCChhhHHHHHHHhh
Q 048774 171 ------TLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 171 ------~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
....+.+...+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 12468899999999999998654
No 200
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.64 E-value=2.1e-05 Score=74.71 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=31.5
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|+...+..+........ .....++|+|++|+|||++|+.+++
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHH
Confidence 46777776666544332222 1345677999999999999999986
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00022 Score=69.41 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=79.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++||+|+|||.||+++++ .....| +.++.+.-.+ . . .......+.......-.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s--------------k-~-vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ--------------K-Y-IGEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--------------S-S-TTHHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--------------c-c-cchHHHHHHHHHHHHHH
Confidence 456778999999999999999998 333332 2233221110 0 0 01111112222222234
Q ss_pred CCeEEEEecCccccCc--------c------chhhhccccCC--CCCCcEEEEEecchhH-HHh---c-CCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY--------D------DWVDFSRPLGA--SAQGSKIIVSTRNHEV-AKI---M-GTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~--------~------~~~~l~~~l~~--~~~~~~ilvTsr~~~~-~~~---~-~~~~~~~l~~L 180 (519)
..+++|+||+++..-. . ....+...+.. ...+..||.||...+. -.. . ..+..+.++.-
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 5789999999963210 0 01112222221 1234445555554322 111 1 23467888888
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.++-.++|..+...... ....+ ...+++.+.|+-
T Consensus 320 d~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 888888899877543221 12222 455777777764
No 202
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.53 E-value=6.1e-05 Score=78.84 Aligned_cols=84 Identities=11% Similarity=-0.051 Sum_probs=43.9
Q ss_pred ccCCcccEEeecCccccccCccccCCCcCcEEeccCCCCc----ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccC
Q 048774 426 FKLQRLRIFSLRGYHISELPDSVGDLRYLRHLNLSRTEIK----TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKL 501 (519)
Q Consensus 426 ~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~l~l~~~~i~----~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L 501 (519)
..+++|+.|++++|.+..+|..+..+++|+.|+++.+... ..+..+..+++|+.|+++.+ ....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCC
Confidence 3666666666666666666655666666666666532111 12223333344444444432 233455555556666
Q ss_pred CEEEccCCC
Q 048774 502 HHLNNSNTD 510 (519)
Q Consensus 502 ~~l~l~~~~ 510 (519)
++|++++|.
T Consensus 296 ~~L~Ls~~~ 304 (592)
T 3ogk_B 296 RKLDLLYAL 304 (592)
T ss_dssp CEEEETTCC
T ss_pred cEEecCCCc
Confidence 666666655
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=0.00012 Score=63.89 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=79.9
Q ss_pred hhhcCCCCceeccccc-ccCCCCCCCch----hhhhhccCCcccEEeecCccccc-----cCccccCCCcCcEEeccCCC
Q 048774 394 KLYDIQHLRTFLPVML-SNSLDGYLAPS----ILTELFKLQRLRIFSLRGYHISE-----LPDSVGDLRYLRHLNLSRTE 463 (519)
Q Consensus 394 ~~~~~~~l~~l~~~~~-~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~l~l~~~~ 463 (519)
.+...+.++.|.+..+ . +... +...+...++|++|++++|.+.. +...+...+.|++|++++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~------i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMN------IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTT------CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCC------CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445677888877665 4 3332 23334467899999999998863 33445566889999999999
Q ss_pred Ccc-----cCcchhcCCCCcEEec--cCCCchhH-----hHHhhcccccCCEEEccCCC
Q 048774 464 IKT-----LPESVSKLYNLHTLLL--EDCRRLKK-----LCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 464 i~~-----lp~~~~~l~~L~~l~l--~~~~~~~~-----lp~~~~~l~~L~~l~l~~~~ 510 (519)
|.. +...+...++|++|++ ++| .++. +...+...++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 873 4556677788999999 777 4433 45567777899999999986
No 204
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.52 E-value=0.00013 Score=76.21 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=86.4
Q ss_pred CeEEEEEEecCCccchhhhhhh-cCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccc-----cCcc
Q 048774 375 NLCHLSYIRGDCDGVQRFEKLY-DIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISE-----LPDS 447 (519)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-----lp~~ 447 (519)
.++.+.+....... ..+..+. .+++|+.|.+..+.. +....+..+. .+++|++|++++|.+.. ++.-
T Consensus 106 ~L~~L~L~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKRMVVTD-DCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEESCBCCH-HHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeCcEEcH-HHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 44455555443222 2233443 578899888877641 2233344444 89999999999987653 2222
Q ss_pred ccCCCcCcEEeccCCC--Cc--ccCcchhcCCCCcEEeccCCCchhHhHHhhcccccCCEEEccCC
Q 048774 448 VGDLRYLRHLNLSRTE--IK--TLPESVSKLYNLHTLLLEDCRRLKKLCAAMGNLIKLHHLNNSNT 509 (519)
Q Consensus 448 ~~~l~~L~~l~l~~~~--i~--~lp~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~~L~~l~l~~~ 509 (519)
...+++|+.|++++|. +. .++..+..+++|+.|++++|..+..+|..+.++++|++|+++.|
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3467799999999886 32 23333456799999999998777778888889999999987655
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00024 Score=70.20 Aligned_cols=153 Identities=17% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++||+|+|||.||+++++ .....| +.++.+.-.+ .. ...............-.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD--------------KY--IGESARIIREMFAYAKE 272 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--------------cc--chHHHHHHHHHHHHHHh
Confidence 457788999999999999999998 333322 2333322110 00 01111112222222334
Q ss_pred CCeEEEEecCccccCc----------c----chhhhccccCC--CCCCcEEEEEecchhHH-Hhc---C-CCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY----------D----DWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KIM---G-TLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~----------~----~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~~---~-~~~~~~l~~L 180 (519)
..+++|++|+++..-. . ....+...+.. ...+..||.||...+.. ..+ + .+..+.++.-
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 5789999999963110 0 01112222211 12345566666544321 111 1 1245677777
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.++-.++|..+...... ....+ ...+++.+.|+-
T Consensus 353 d~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 777878888877643322 11222 345677777754
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=2.8e-05 Score=83.87 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=82.4
Q ss_pred hhhccccccccceeeeEeecCCCCCC----CCCCCC--eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCC
Q 048774 13 LEAAAHDVFPCRKQAFIWAASPEETM----PEWPEP--MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFD 86 (519)
Q Consensus 13 l~~~~~~~f~gR~~~~~~l~~~~~~~----~~~~~~--~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 86 (519)
++......++|.++.+..+...+... .....+ .++++|++|+|||++|+.+++ .....-...+.++++...+
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCS
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccc
Confidence 44444566788888765554422211 111122 577999999999999999987 3322223445555543211
Q ss_pred HHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCC-----------CCCCcE
Q 048774 87 VIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGA-----------SAQGSK 155 (519)
Q Consensus 87 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~~~~ 155 (519)
.. ......+...++. ....+|+||+++.........+...+.. ...++.
T Consensus 563 ~~-----------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 563 KH-----------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp SC-----------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred cc-----------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 00 0000111111111 2344899999976654443333332221 123568
Q ss_pred EEEEecc-----h------------hHHHhcCCCCeeecCCCChhhHHHHHHHhh
Q 048774 156 IIVSTRN-----H------------EVAKIMGTLPAYQLKKLSYNDCLAIFAQHS 193 (519)
Q Consensus 156 ilvTsr~-----~------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 193 (519)
||+||.. . +...++ ...+.+.+++.++-..++...+
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHHH
Confidence 8888872 1 111111 2467889999888887776643
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.0004 Score=70.24 Aligned_cols=175 Identities=11% Similarity=0.069 Sum_probs=92.1
Q ss_pred cccccceeeeEeecCCCCCC----------CCCCCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHH
Q 048774 19 DVFPCRKQAFIWAASPEETM----------PEWPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVI 88 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~----------~~~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 88 (519)
+.++|.++.++.|...+... .-..++.++|+|++|+|||++|+.+++ .... ..+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCC---CEEEEEchH-----
Confidence 44688888777775543311 012456688999999999999999987 3322 223333211
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCeEEEEecCccccCc-----------cchhhhccccC--CCCCCcE
Q 048774 89 RLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSGKKFLLVLDDVWNRNY-----------DDWVDFSRPLG--ASAQGSK 155 (519)
Q Consensus 89 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~--~~~~~~~ 155 (519)
+...+ ...........+.....+++.+|+||+++.... .....+...+. ....+..
T Consensus 274 -----l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 -----IMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp -----HHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred -----hhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11110 111112223334444456788999999943211 01112222222 1123455
Q ss_pred EEEEecchh-HHHhc----CCCCeeecCCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCC
Q 048774 156 IIVSTRNHE-VAKIM----GTLPAYQLKKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGL 219 (519)
Q Consensus 156 ilvTsr~~~-~~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 219 (519)
||.||.... +.... .....+.+...+.++-.++|..++..... .... ...++++.+.|+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~----~l~~la~~t~g~ 406 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDV----DLEQVANETHGH 406 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTC----CHHHHHHTCTTC
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchh----hHHHHHHHccCC
Confidence 555665442 21111 12245788999999999999887543221 1111 234566667665
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.46 E-value=0.00037 Score=70.23 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=56.0
Q ss_pred EEEEecCccccCccchhhhccccCCCCCCcEEEEEe----------c----ch----hHHHhcCCCCeeecCCCChhhHH
Q 048774 125 FLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVST----------R----NH----EVAKIMGTLPAYQLKKLSYNDCL 186 (519)
Q Consensus 125 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTs----------r----~~----~~~~~~~~~~~~~l~~L~~~ea~ 186 (519)
-++++|+++..+......+...+....... +|+.| . .. .+..++ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCE-EEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 389999998776655666666665544343 44343 2 11 122222 45789999999999
Q ss_pred HHHHHhhhCCCCCCCCchHHHHHHHHHHhh-CCCchhH
Q 048774 187 AIFAQHSLGTRDFSSHMSLEEIGRKIVTKC-DGLPLAA 223 (519)
Q Consensus 187 ~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~PLal 223 (519)
+++...+........ ++.+..|++.+ +|.|...
T Consensus 373 ~iL~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 373 QIIKIRAQTEGINIS----EEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHccCCCHHHH
Confidence 999877532221111 45667788888 7877643
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.0014 Score=60.40 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
++.++|+|++|+||||+|+.+++ ..... .+.++...-.+ . ............+......
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~i~~~~~~~--------------~--~~~~~~~~~~~~~~~a~~~ 103 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG--EAKVP---FFTISGSDFVE--------------M--FVGVGASRVRDMFEQAKKA 103 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH--HHTCC---EEEECSCSSTT--------------S--CCCCCHHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHH--HcCCC---EEEEeHHHHHH--------------H--hhhhhHHHHHHHHHHHHHc
Confidence 45678999999999999999987 33222 23333221100 0 0111222333333333345
Q ss_pred CeEEEEecCccccCcc--------------chhhhccccCC--CCCCcEEEEEecchh-HHHhc-C---CCCeeecCCCC
Q 048774 123 KKFLLVLDDVWNRNYD--------------DWVDFSRPLGA--SAQGSKIIVSTRNHE-VAKIM-G---TLPAYQLKKLS 181 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~--------------~~~~l~~~l~~--~~~~~~ilvTsr~~~-~~~~~-~---~~~~~~l~~L~ 181 (519)
.+.++++|+++..... ....+...+.. ...+..||.||.... +.... . ....+.+...+
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 6789999999432110 01111111111 123455666665443 21111 1 12356677777
Q ss_pred hhhHHHHHHHhh
Q 048774 182 YNDCLAIFAQHS 193 (519)
Q Consensus 182 ~~ea~~L~~~~~ 193 (519)
.++-.+++..+.
T Consensus 184 ~~~r~~il~~~~ 195 (257)
T 1lv7_A 184 VRGREQILKVHM 195 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777665
No 210
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.46 E-value=0.0002 Score=74.92 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCeEEEEEEecCCccchhhhhhhc-CCCCceecccccc--cCCCCCC-CchhhhhhccCCcccEEeecCcc--cc-ccCc
Q 048774 374 RNLCHLSYIRGDCDGVQRFEKLYD-IQHLRTFLPVMLS--NSLDGYL-APSILTELFKLQRLRIFSLRGYH--IS-ELPD 446 (519)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~--~~-~lp~ 446 (519)
..++.+.+..+.... ..+..+.. +++|+.|.+..+. +.+...- ...++..+..+++|+.|++++|. +. ..+.
T Consensus 378 ~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455666664443332 22334443 7777777765432 1111100 01233334478889999986542 44 2223
Q ss_pred cc-cCCCcCcEEeccCCCCc--ccCcchhcCCCCcEEeccCCCchhH-hHHhhcccccCCEEEccCCCCCC
Q 048774 447 SV-GDLRYLRHLNLSRTEIK--TLPESVSKLYNLHTLLLEDCRRLKK-LCAAMGNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 447 ~~-~~l~~L~~l~l~~~~i~--~lp~~~~~l~~L~~l~l~~~~~~~~-lp~~~~~l~~L~~l~l~~~~~l~ 513 (519)
.+ ..+++|++|++++|.++ .++..+..+++|+.|++++|..... ++..+..+++|++|++++|+ +.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CC
Confidence 33 34788999999999987 3555667889999999999963222 55556789999999999998 44
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.45 E-value=6.1e-05 Score=70.15 Aligned_cols=47 Identities=17% Similarity=0.040 Sum_probs=30.7
Q ss_pred cccccceeeeEeecCCCCCC---------CCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 19 DVFPCRKQAFIWAASPEETM---------PEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~---------~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|.++.++.+....... ....++.++|+|++|+|||++|+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 34667777666554422200 011234467999999999999999987
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00017 Score=71.09 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++-+.++||+|+|||+||+++++
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456678999999999999999997
No 213
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.42 E-value=0.00042 Score=65.32 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++.++++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445677999999999999999997
No 214
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00034 Score=69.02 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=77.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++|++|+|||.||+++++ .....| +.++.+.-.+ .. .......+.......-.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s--------------k~--vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ--------------KY--VGEGARMVRELFEMART 300 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--------------CS--SSHHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--------------cc--CCHHHHHHHHHHHHHHh
Confidence 567788999999999999999998 333332 2233221100 00 01111112222223334
Q ss_pred CCeEEEEecCccccCc-------c-------chhhhccccCCC--CCCcEEEEEecchhH-HHh---c-CCCCeeecCCC
Q 048774 122 GKKFLLVLDDVWNRNY-------D-------DWVDFSRPLGAS--AQGSKIIVSTRNHEV-AKI---M-GTLPAYQLKKL 180 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~-------~-------~~~~l~~~l~~~--~~~~~ilvTsr~~~~-~~~---~-~~~~~~~l~~L 180 (519)
..+++|++|+++..-. . ....+...+... ..+..||.||..... -.. . .....+.+...
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 6789999999963210 0 011111111111 223445555543322 111 1 13456778877
Q ss_pred ChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 181 SYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 181 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
+.++-.++|..+...... ...-+ ...|++.+.|+-
T Consensus 381 d~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp CHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 888888888877543221 11122 345777777764
No 215
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.41 E-value=0.00019 Score=75.12 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=69.9
Q ss_pred cCCCCceecccccc----cCCCCC-CCchhhhhhccCCcccEEeecCcccc-ccCccccC-CCcCcEEeccCCCCc-ccC
Q 048774 397 DIQHLRTFLPVMLS----NSLDGY-LAPSILTELFKLQRLRIFSLRGYHIS-ELPDSVGD-LRYLRHLNLSRTEIK-TLP 468 (519)
Q Consensus 397 ~~~~l~~l~~~~~~----~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~-l~~L~~l~l~~~~i~-~lp 468 (519)
.+++|+.|.+..+. +..... ....++.-+..+++|+.|++++ .+. ..+..+.. +++|++|++++|.++ ..+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 46777777776211 111100 0112222244778888888877 444 22334444 788999999888886 333
Q ss_pred cch-hcCCCCcEEeccCCCchhHhH-HhhcccccCCEEEccCCC
Q 048774 469 ESV-SKLYNLHTLLLEDCRRLKKLC-AAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 469 ~~~-~~l~~L~~l~l~~~~~~~~lp-~~~~~l~~L~~l~l~~~~ 510 (519)
..+ ..+++|+.|++++|......+ ..+..+++|+.|++++|+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 334 568889999999886533322 345568899999999887
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.40 E-value=0.00056 Score=61.29 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHh-----------hccCCCCCCCHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSI-----------VTHQNVDNLNLN 110 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----------~~~~~~~~~~~~ 110 (519)
...+++|.|++|+||||||..++. ..-..++|++.....+...+.. +.... .........+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456888999999999999999886 1224678888766444443332 22221 111111112222
Q ss_pred HHHHHHHHHhcCCeEEEEecCcc
Q 048774 111 KLQEELNKQLSGKKFLLVLDDVW 133 (519)
Q Consensus 111 ~~~~~l~~~l~~~~~LlvlDdv~ 133 (519)
.....++..+..++-++|+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 33444444444457799999984
No 217
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.39 E-value=3.3e-05 Score=71.37 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=58.9
Q ss_pred EeecCccccccCcc----ccCCCcCcEEeccCCCCccc---CcchhcCCCCcEEeccCCCchhHhHHhhcccc--cCCEE
Q 048774 434 FSLRGYHISELPDS----VGDLRYLRHLNLSRTEIKTL---PESVSKLYNLHTLLLEDCRRLKKLCAAMGNLI--KLHHL 504 (519)
Q Consensus 434 L~l~~~~~~~lp~~----~~~l~~L~~l~l~~~~i~~l---p~~~~~l~~L~~l~l~~~~~~~~lp~~~~~l~--~L~~l 504 (519)
++++.|....++.. ...+++|+.|+|++|.|+.+ |..+..+++|+.|+|++| .+..+. .+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceE
Confidence 55666644433321 24688999999999999854 456779999999999998 555552 345555 99999
Q ss_pred EccCCCCCCCCC
Q 048774 505 NNSNTDSLEEMP 516 (519)
Q Consensus 505 ~l~~~~~l~~lP 516 (519)
++++|+..+.+|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 999999555555
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=7.5e-05 Score=73.75 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH-HHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN-KQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l 120 (519)
.++-+.++||+|+|||.||+++++ .....| +.++.+.-.+ . .....+...+.+. ..-
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~--------------~---~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ--------------M---YIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS--------------S---CSSHHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh--------------c---ccchHHHHHHHHHHHHH
Confidence 456778999999999999999998 333322 2233221100 0 0111111222222 222
Q ss_pred cCCeEEEEecCcccc-------Ccc-------chhhhccccCCC--CCCcEEEEEecchhH-HHhc----CCCCeeecCC
Q 048774 121 SGKKFLLVLDDVWNR-------NYD-------DWVDFSRPLGAS--AQGSKIIVSTRNHEV-AKIM----GTLPAYQLKK 179 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~-------~~~-------~~~~l~~~l~~~--~~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~ 179 (519)
...+++|++|+++.. ... ....+...+... ..+..||.||...+. -..+ ..+..+.++.
T Consensus 272 ~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l 351 (434)
T 4b4t_M 272 EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351 (434)
T ss_dssp HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCC
T ss_pred hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCC
Confidence 346899999998521 000 011222222222 123445555554322 1111 1124577787
Q ss_pred CChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 180 LSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 180 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
-+.++..++|..+...... ...-+ ...|++.+.|+-
T Consensus 352 Pd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 352 PSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSCC
T ss_pred cCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 7888888888766533221 11112 345777777754
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.00095 Score=66.96 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
++-++|+|++|+|||+||+.++. ..... .+.++...-... + ...........+......
T Consensus 49 p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~----------~------~g~~~~~~r~lf~~A~~~ 107 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL----------F------VGVGAARVRDLFAQAKAH 107 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC----------C------TTHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH----------H------hcccHHHHHHHHHHHHhc
Confidence 35578999999999999999987 33222 223333221110 0 001112233344444556
Q ss_pred CeEEEEecCccccCc--------------cchhhhccccCC--CCCCcEEEEEecchhHHH-h-cC---CCCeeecCCCC
Q 048774 123 KKFLLVLDDVWNRNY--------------DDWVDFSRPLGA--SAQGSKIIVSTRNHEVAK-I-MG---TLPAYQLKKLS 181 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~~~~ilvTsr~~~~~~-~-~~---~~~~~~l~~L~ 181 (519)
.+.+|+||+++.... .....+...+.. ...+..||.||...+... . .. ....+.+...+
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 789999999964211 011222222211 123455666665543321 1 11 22367788888
Q ss_pred hhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 182 YNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 182 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
.++-.+++..++..... ....+ ...+++.+.|+.
T Consensus 188 ~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 88878888776543221 11111 344778888877
No 220
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=0.00022 Score=69.35 Aligned_cols=106 Identities=16% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCCCceecccccccCCCCCCCchhhhhhc--cCCcccEEeecCc--c------ccccCccc--cCCCcCcEEeccCCCCc
Q 048774 398 IQHLRTFLPVMLSNSLDGYLAPSILTELF--KLQRLRIFSLRGY--H------ISELPDSV--GDLRYLRHLNLSRTEIK 465 (519)
Q Consensus 398 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~------~~~lp~~~--~~l~~L~~l~l~~~~i~ 465 (519)
+++|+.|.+..+. ++......+. .+++|+.|+++.+ . +..+.+.+ ..+++|++|++++|.+.
T Consensus 192 ~~~L~~L~L~~~~------l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGG------LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSB------CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCC------CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 6677777765443 4455555554 6788888887531 1 22222222 24678888888887776
Q ss_pred -ccCcchh---cCCCCcEEeccCCCchhH-----hHHhhcccccCCEEEccCCC
Q 048774 466 -TLPESVS---KLYNLHTLLLEDCRRLKK-----LCAAMGNLIKLHHLNNSNTD 510 (519)
Q Consensus 466 -~lp~~~~---~l~~L~~l~l~~~~~~~~-----lp~~~~~l~~L~~l~l~~~~ 510 (519)
..+..+. .+++|++|+|+.|. +.. ++..+.++++|+.|++++|.
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred hHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3333332 46778888888773 433 44445677888888888775
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00056 Score=66.80 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHH-HHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEE-LNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l 120 (519)
.++-+.++||+|+|||.||+++++ .....| +.++.+.-. .. .....+..... ....-
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~--------------sk---~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELI--------------QK---YLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGC--------------CS---SSSHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhh--------------hc---cCchHHHHHHHHHHHHH
Confidence 456788999999999999999998 333332 222222110 00 01111222222 22222
Q ss_pred cCCeEEEEecCccccCc--------------cchhhhccccCC--CCCCcEEEEEecchhHH-Hhc---C-CCCeeecCC
Q 048774 121 SGKKFLLVLDDVWNRNY--------------DDWVDFSRPLGA--SAQGSKIIVSTRNHEVA-KIM---G-TLPAYQLKK 179 (519)
Q Consensus 121 ~~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~~~~ilvTsr~~~~~-~~~---~-~~~~~~l~~ 179 (519)
...+++|++|+++.... .....+...+.. ...+..||.||...+.. ..+ + .+..+.+..
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l 352 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC
Confidence 45789999999863110 001112221111 12344455555543321 111 1 123466777
Q ss_pred CChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 180 LSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 180 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
-+.++-.++|..+...... ....+ ...|++.+.|+-
T Consensus 353 Pd~~~R~~Il~~~l~~~~l-~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 353 PDLSTKKKILGIHTSKMNL-SEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCHHHHHHHHHHHHTTSCB-CSCCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCCC
Confidence 7777778888776543221 12222 345667777754
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.18 E-value=0.00016 Score=68.72 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=27.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEE
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCV 81 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~ 81 (519)
...++|+|++|+|||+||..+++ ... ..-..++++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 56788999999999999999988 433 33234455544
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.18 E-value=0.00066 Score=72.23 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=80.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++|++|+|||+||+++++ ....+ .+.++... +.... .......+.........
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~--elg~~---~~~v~~~~----------l~sk~------~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE----------IMSKL------AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHT--TTTCE---EEEEEHHH----------HHSSC------TTHHHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HhCCe---EEEEEhHH----------hhccc------chHHHHHHHHHHHHHHH
Confidence 456788999999999999999998 33322 22333211 11000 11122233333444445
Q ss_pred CCeEEEEecCccccCc------cc-----hhhhccccCCC--CCCcEEEEEecchh-HHHhc----CCCCeeecCCCChh
Q 048774 122 GKKFLLVLDDVWNRNY------DD-----WVDFSRPLGAS--AQGSKIIVSTRNHE-VAKIM----GTLPAYQLKKLSYN 183 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~------~~-----~~~l~~~l~~~--~~~~~ilvTsr~~~-~~~~~----~~~~~~~l~~L~~~ 183 (519)
..+.+|+||+++.... .+ ..++...+... ..+..||.||...+ +...+ .....+.+...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 6799999999964211 00 11111111111 12334454554332 22211 12346788888888
Q ss_pred hHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCchh
Q 048774 184 DCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLA 222 (519)
Q Consensus 184 ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 222 (519)
+-.++|..+...... ....+ ...|++.+.|+--|
T Consensus 376 ~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 376 GRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp HHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCCHH
T ss_pred HHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCCHH
Confidence 888898876533221 11112 45577778777533
No 224
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.0002 Score=67.21 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=45.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEE--cCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCV--SDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQL 120 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 120 (519)
.+++.|+|++|+|||+||.+++. . .+ ..++|++. .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~--~-~G--~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE--A-LG--GKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH--H-HH--TTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--h-CC--CCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 34567999999999999999886 2 11 24567777 222110 0145566666666666
Q ss_pred cCCeEEEEecCcc
Q 048774 121 SGKKFLLVLDDVW 133 (519)
Q Consensus 121 ~~~~~LlvlDdv~ 133 (519)
...+ ++|+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6556 99999994
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.13 E-value=0.00052 Score=59.82 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=68.0
Q ss_pred hhccCCcccEEeecCc-cccc-----cCccccCCCcCcEEeccCCCCcc-----cCcchhcCCCCcEEeccCCCchhH--
Q 048774 424 ELFKLQRLRIFSLRGY-HISE-----LPDSVGDLRYLRHLNLSRTEIKT-----LPESVSKLYNLHTLLLEDCRRLKK-- 490 (519)
Q Consensus 424 ~~~~l~~L~~L~l~~~-~~~~-----lp~~~~~l~~L~~l~l~~~~i~~-----lp~~~~~l~~L~~l~l~~~~~~~~-- 490 (519)
-+...++|+.|++++| .+.. +...+...++|++|++++|.|.. +...+...++|++|+|++| .+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 3447899999999999 8763 34556677899999999999862 3344556688999999998 4443
Q ss_pred ---hHHhhcccccCCEEEc--cCCCCCC
Q 048774 491 ---LCAAMGNLIKLHHLNN--SNTDSLE 513 (519)
Q Consensus 491 ---lp~~~~~l~~L~~l~l--~~~~~l~ 513 (519)
+...+...++|++|++ ++|. ++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CC
Confidence 5667888889999999 7776 54
No 226
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.09 E-value=0.00038 Score=60.45 Aligned_cols=119 Identities=17% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC---CCHHHHHHHHHHH---hhccCCCCCCC-------H
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD---FDVIRLTKTILTS---IVTHQNVDNLN-------L 109 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~---l~~~~~~~~~~-------~ 109 (519)
...+.|++..|.||||.|-.+.- +..++=..+.++..... .+...++..+--. .+........+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 45667777788999999977665 33333334555544432 1223333332000 00000001111 1
Q ss_pred HHHHHHHHHHhcCCeE-EEEecCccc---cCccchhhhccccCCCCCCcEEEEEecch
Q 048774 110 NKLQEELNKQLSGKKF-LLVLDDVWN---RNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 110 ~~~~~~l~~~l~~~~~-LlvlDdv~~---~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
......+++.+.+.+| |+|||++-. ..+...+++...+........+|+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2223445555555555 999999832 23445555655555555677899999985
No 227
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.04 E-value=0.002 Score=62.43 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=55.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|+|++|+||||||..++. .....-..++|++.....+.. .+..++.... ....+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 456788999999999999988876 333233468899988765543 1333333211 12345666666666
Q ss_pred HHhcC-CeEEEEecCcc
Q 048774 118 KQLSG-KKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~~-~~~LlvlDdv~ 133 (519)
...+. ..-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 66544 34599999984
No 228
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.98 E-value=0.00018 Score=78.45 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=33.0
Q ss_pred ccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 18 HDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 18 ~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.++.+..+...+... +..+...++|+|++|+|||++|+.+++
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345789988777665433211 111223677999999999999999987
No 229
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.97 E-value=0.0012 Score=63.41 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|.|++|+||||||..++. .....-..++|++.....+.. .++++..... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 345777999999999999999887 333322357788877665543 3344433221 13455666666666
Q ss_pred HHhc-CCeEEEEecCcc
Q 048774 118 KQLS-GKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~-~~~~LlvlDdv~ 133 (519)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5554 445689999983
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.0021 Score=66.08 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|+|++|+||||||+.++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999987
No 231
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.93 E-value=0.0029 Score=60.92 Aligned_cols=85 Identities=16% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|.|++|+||||||..++. .....=..++|++.....+.. .++.++.... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 456788999999999999998876 333333468888887765543 2333432211 12335566666555
Q ss_pred HHhcC-CeEEEEecCcc
Q 048774 118 KQLSG-KKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~~-~~~LlvlDdv~ 133 (519)
..... +.-++|+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 55433 46699999984
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.92 E-value=0.0004 Score=62.20 Aligned_cols=114 Identities=12% Similarity=-0.071 Sum_probs=61.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC-CCCCHHHHHHHHHHHh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV-DNLNLNKLQEELNKQL 120 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l 120 (519)
...+++|+|+.|+||||++..+.. +...+-..++.+...... . ....+++.++..... .....+++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346777999999999999988877 444443344444433321 1 111233333322110 1223344555555544
Q ss_pred cCC-eEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 121 SGK-KFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 121 ~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
.+. .-++|+|.+...+....+.+ ..+.. .+..|++|-++.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 444 44999999965433322222 22222 267788888853
No 233
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.91 E-value=0.013 Score=56.33 Aligned_cols=156 Identities=11% Similarity=-0.053 Sum_probs=95.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH-HH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELN-KQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~ 119 (519)
-.++.+++|+.|.||++.+..+.+ ... ..|+....+......+. .++.+.+. .-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~----------------------~~l~~~~~~~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHTFSIDPNTDW----------------------NAIFSLCQAMS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEEEECCTTCCH----------------------HHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEEEEecCCCCH----------------------HHHHHHhcCcC
Confidence 347788999999999999988876 332 23432111222222222 22222221 12
Q ss_pred hcCCeEEEEecCccc-cCccchhhhccccCCCCCCcEEEEEecc-------hhHHHhcC-CCCeeecCCCChhhHHHHHH
Q 048774 120 LSGKKFLLVLDDVWN-RNYDDWVDFSRPLGASAQGSKIIVSTRN-------HEVAKIMG-TLPAYQLKKLSYNDCLAIFA 190 (519)
Q Consensus 120 l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~-------~~~~~~~~-~~~~~~l~~L~~~ea~~L~~ 190 (519)
+-+++-++|+|+++. ........+...+....+++.+|+++.. ..+.+.+. ....++..+++..+....+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 335567889999865 4444555666666655567777777643 23333332 33578899999999988887
Q ss_pred HhhhCCCCCCCCchHHHHHHHHHHhhCCCchhHHH
Q 048774 191 QHSLGTRDFSSHMSLEEIGRKIVTKCDGLPLAAQT 225 (519)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 225 (519)
..+...+...+ ++.+..+++.++|....+..
T Consensus 153 ~~~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 76643322111 56788899999998876543
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.88 E-value=0.00025 Score=76.53 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=35.3
Q ss_pred hhhccccccccceeeeEeecCCCCCC------CCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 13 LEAAAHDVFPCRKQAFIWAASPEETM------PEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 13 l~~~~~~~f~gR~~~~~~l~~~~~~~------~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++......++|.++.+..+...+... +..+...++++|++|+|||++|+.+++
T Consensus 452 l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 452 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp HHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 44455567789888776554432211 111223577999999999999999987
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.88 E-value=0.0024 Score=61.63 Aligned_cols=85 Identities=18% Similarity=0.060 Sum_probs=52.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|+|++|+||||||..++. .....-..++|++.....+... +..++.... ....+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 456788999999999999988876 3333334688999877665431 333332211 02234555555554
Q ss_pred HHhc-CCeEEEEecCcc
Q 048774 118 KQLS-GKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~-~~~~LlvlDdv~ 133 (519)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 445599999983
No 236
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.80 E-value=0.0034 Score=60.45 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc----CCCceEEEEEcCCCCHHHHHHHHHHHhhccC-----------CCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN----HFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ-----------NVDN 106 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~~ 106 (519)
...++.|+|++|+|||+||..++....... .-..++|++.....+...+.+ ++..++... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 345777999999999999988876211111 224688998887655554443 233332211 1111
Q ss_pred CCHHHHHHHHHHHhc---CCeEEEEecCc
Q 048774 107 LNLNKLQEELNKQLS---GKKFLLVLDDV 132 (519)
Q Consensus 107 ~~~~~~~~~l~~~l~---~~~~LlvlDdv 132 (519)
.........+...+. .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222223333444443 45568899988
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.0029 Score=57.09 Aligned_cols=117 Identities=14% Similarity=0.003 Sum_probs=60.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC------------------
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN------------------ 103 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------------ 103 (519)
...+++|.|++|+|||||+..++. .....-..++|++... ....+...+. .+.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 346888999999999999999885 2222223466666543 3333333322 2221100
Q ss_pred ----CCCCCHHHHHHHHHHHhc-CCe--EEEEecCcccc---CccchhhhccccCCC--CCCcEEEEEecch
Q 048774 104 ----VDNLNLNKLQEELNKQLS-GKK--FLLVLDDVWNR---NYDDWVDFSRPLGAS--AQGSKIIVSTRNH 163 (519)
Q Consensus 104 ----~~~~~~~~~~~~l~~~l~-~~~--~LlvlDdv~~~---~~~~~~~l~~~l~~~--~~~~~ilvTsr~~ 163 (519)
....+.++....+...+. .++ .++|+|..... +......+...+... ..+..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011144555555544442 233 49999998532 222222222222211 2367788888764
No 238
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.0013 Score=63.02 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=59.2
Q ss_pred cCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCcccCc-chhcCCCCc-EEeccCCCchhHhH-HhhcccccCC
Q 048774 427 KLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTLPE-SVSKLYNLH-TLLLEDCRRLKKLC-AAMGNLIKLH 502 (519)
Q Consensus 427 ~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~lp~-~~~~l~~L~-~l~l~~~~~~~~lp-~~~~~l~~L~ 502 (519)
.+++|+.+++++|.++.+|. .+..+.+|+.+++..| ++.++. .|..+.+|+ .+++.. .+..++ ..|.++++|+
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 36777778887777777764 4666777778877776 665544 466777777 777776 344444 3577777788
Q ss_pred EEEccCCCCCCCCCC
Q 048774 503 HLNNSNTDSLEEMPV 517 (519)
Q Consensus 503 ~l~l~~~~~l~~lP~ 517 (519)
.+++++|+ +..++.
T Consensus 301 ~l~l~~n~-i~~I~~ 314 (329)
T 3sb4_A 301 YVLATGDK-ITTLGD 314 (329)
T ss_dssp EEEECSSC-CCEECT
T ss_pred EEEeCCCc-cCccch
Confidence 88777666 666654
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0039 Score=58.32 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=52.3
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHH-HHHHH
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKL-QEELN 117 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~-~~~l~ 117 (519)
++.|.|++|+||||||.+++. ..... =..++|++.....+.. -+++++.... ..+.+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 556999999999999988876 33333 2468899888776653 2455554322 123455555 43333
Q ss_pred HH--h-cCCeEEEEecCcc
Q 048774 118 KQ--L-SGKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~--l-~~~~~LlvlDdv~ 133 (519)
.. + ..++-++|+|.+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 2 3567899999984
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.69 E-value=0.0038 Score=59.65 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc----CCCceEEEEEcCCCCHHHHHHHHHHHhhccCC--------CCCCCH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN----HFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN--------VDNLNL 109 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 109 (519)
...++.|+|++|+|||+||..++....... .-..++|++.....+...+.+ ++..++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 456788999999999999988875211111 024688998887655555443 3344332110 012233
Q ss_pred H---HHHHHHHHHhc--CCeEEEEecCc
Q 048774 110 N---KLQEELNKQLS--GKKFLLVLDDV 132 (519)
Q Consensus 110 ~---~~~~~l~~~l~--~~~~LlvlDdv 132 (519)
+ .....+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 3 23344444443 45679999998
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.60 E-value=0.003 Score=57.39 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=50.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc----CCCceEEEEEcCCCCHHHHHHHHHHHhhccC--------CCCCCCH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN----HFDLKAWTCVSDDFDVIRLTKTILTSIVTHQ--------NVDNLNL 109 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~--------~~~~~~~ 109 (519)
...+++|.|++|+|||||+..++....... .-..++|++.........+. .++..+.... .....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 456888999999999999998875211111 12578888877654443332 2333332211 0011222
Q ss_pred HH---HHHHHHHHhc-CCeEEEEecCcc
Q 048774 110 NK---LQEELNKQLS-GKKFLLVLDDVW 133 (519)
Q Consensus 110 ~~---~~~~l~~~l~-~~~~LlvlDdv~ 133 (519)
++ ....+...+. .+.-++|+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2233444443 467799999983
No 242
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.58 E-value=0.0026 Score=54.33 Aligned_cols=62 Identities=10% Similarity=0.196 Sum_probs=48.5
Q ss_pred CcCcEEeccCCCCc-ccCcchhcCCCCcEEeccCCCchhHhH-Hhhccc----ccCCEEEccCCCCCC
Q 048774 452 RYLRHLNLSRTEIK-TLPESVSKLYNLHTLLLEDCRRLKKLC-AAMGNL----IKLHHLNNSNTDSLE 513 (519)
Q Consensus 452 ~~L~~l~l~~~~i~-~lp~~~~~l~~L~~l~l~~~~~~~~lp-~~~~~l----~~L~~l~l~~~~~l~ 513 (519)
..|+.|++++|.|+ .--..+..+++|+.|+|++|..+.+-- ..+..+ ++|++|++++|..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 47999999999988 444567889999999999997776532 235553 479999999997664
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.48 E-value=0.0038 Score=59.63 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc---------CC-----CceEEEEEcCCCCHHHHHHHHHHHhhccCC----
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN---------HF-----DLKAWTCVSDDFDVIRLTKTILTSIVTHQN---- 103 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 103 (519)
...++.|+|++|+|||+||..++....... .. ..++|++.....+...+.+. +..+.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhc
Confidence 345777999999999999988875211111 11 36788888876655555433 333332110
Q ss_pred ----CCCCCHHH---HHHHHHHHhcC--CeEEEEecCc
Q 048774 104 ----VDNLNLNK---LQEELNKQLSG--KKFLLVLDDV 132 (519)
Q Consensus 104 ----~~~~~~~~---~~~~l~~~l~~--~~~LlvlDdv 132 (519)
....+.+. ....+...+.. +.-++|+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 01223332 33444444443 4558889988
No 244
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.28 E-value=0.0055 Score=58.64 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=78.3
Q ss_pred cCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCc-cccCCCcCc-EEeccCCCCcccC-cchh
Q 048774 397 DIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPD-SVGDLRYLR-HLNLSRTEIKTLP-ESVS 472 (519)
Q Consensus 397 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~-~l~l~~~~i~~lp-~~~~ 472 (519)
.+++|+.+.+..+. + ..++...+ .+.+|+.|++..| ++.++. .+..+.+|+ .+.+.. .++.++ ..|.
T Consensus 224 ~~~~L~~l~L~~n~------i-~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 224 YMPNLVSLDISKTN------A-TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp HCTTCCEEECTTBC------C-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred hcCCCeEEECCCCC------c-ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 37888888776653 2 34555544 8999999999997 887764 578899999 999988 677554 6788
Q ss_pred cCCCCcEEeccCCCchhHhHH-hhcccccCCEEEc
Q 048774 473 KLYNLHTLLLEDCRRLKKLCA-AMGNLIKLHHLNN 506 (519)
Q Consensus 473 ~l~~L~~l~l~~~~~~~~lp~-~~~~l~~L~~l~l 506 (519)
.+.+|+.+++++| .+..++. .|.++++|+.++.
T Consensus 295 ~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 295 GCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 9999999999887 6666665 5889999998864
No 245
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.28 E-value=0.007 Score=58.63 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=68.6
Q ss_pred hhcCCCCceecccccccCCCCCCCchhhhhhccCCcccEEeecCccccc-cCcccc--CCCcCcEEeccCC--C------
Q 048774 395 LYDIQHLRTFLPVMLSNSLDGYLAPSILTELFKLQRLRIFSLRGYHISE-LPDSVG--DLRYLRHLNLSRT--E------ 463 (519)
Q Consensus 395 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~--~l~~L~~l~l~~~--~------ 463 (519)
+..+++|+.|.+.++.+ ...++ + .+++|+.|++..+.+.. ....+. .+++|+.|+|+.+ .
T Consensus 168 l~~~P~L~~L~L~g~~~-------l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNN-------LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHTCTTCCEEEEECCBT-------CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HhcCCCCcEEEEeCCCC-------ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 35567888888766521 11222 2 47889999998887652 112333 6889999988531 1
Q ss_pred CcccCcch--hcCCCCcEEeccCCCchhHhHHhh---cccccCCEEEccCCCCCC
Q 048774 464 IKTLPESV--SKLYNLHTLLLEDCRRLKKLCAAM---GNLIKLHHLNNSNTDSLE 513 (519)
Q Consensus 464 i~~lp~~~--~~l~~L~~l~l~~~~~~~~lp~~~---~~l~~L~~l~l~~~~~l~ 513 (519)
+..+.+.+ ..+++|++|++++|......+..+ ..+++|++|+++.|. ++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~ 292 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LT 292 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CC
Confidence 21222222 247899999999885443333333 368899999999887 54
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.27 E-value=0.0023 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.2
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999886
No 247
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.021 Score=54.15 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=36.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
...+++|.|.+|+||||+|..++.....++ ..++|++... +..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 456888999999999999988876322222 5678887764 456666665543
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.24 E-value=0.03 Score=56.43 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc-
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS- 121 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~- 121 (519)
++-++|+|++|+|||+||+.++. ... ...+.++...-.. .........+...+.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~--~~~---~~~i~i~g~~~~~--------------------~~~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAG--EAR---VPFITASGSDFVE--------------------MFVGVGAARVRDLFET 118 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH--HTT---CCEEEEEGGGGTS--------------------SCTTHHHHHHHHHTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HhC---CCEEEEehhHHHH--------------------hhhhhHHHHHHHHHHH
Confidence 34478999999999999999987 332 2233343322100 000111222222222
Q ss_pred ---CCeEEEEecCccccCc----------c----chhhhccccCCC--CCCcEEEEEecchhHHH-hc----CCCCeeec
Q 048774 122 ---GKKFLLVLDDVWNRNY----------D----DWVDFSRPLGAS--AQGSKIIVSTRNHEVAK-IM----GTLPAYQL 177 (519)
Q Consensus 122 ---~~~~LlvlDdv~~~~~----------~----~~~~l~~~l~~~--~~~~~ilvTsr~~~~~~-~~----~~~~~~~l 177 (519)
..+.++++|+++.... . ....+...+... .....++.+|....... .. .....+.+
T Consensus 119 a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i 198 (499)
T 2dhr_A 119 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 198 (499)
T ss_dssp SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEEC
T ss_pred HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEec
Confidence 2457999999953211 0 011222222211 12334444555443321 11 12356788
Q ss_pred CCCChhhHHHHHHHhhhCCCCCCCCchHHHHHHHHHHhhCCCc
Q 048774 178 KKLSYNDCLAIFAQHSLGTRDFSSHMSLEEIGRKIVTKCDGLP 220 (519)
Q Consensus 178 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 220 (519)
...+.++-.+++..++.... ..... ....++..+.|+.
T Consensus 199 ~~Pd~~~R~~IL~~~~~~~~-l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 199 DAPDVKGREQILRIHARGKP-LAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp CCCCHHHHHHHHHHTTSSSC-CCCSS----TTHHHHTTSCSCC
T ss_pred CCCCHHHHHHHHHHHHhcCC-CChHH----HHHHHHHhcCCCC
Confidence 88888888888877653211 11111 1344677777766
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0017 Score=56.24 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|+||+|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999876
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.01 E-value=0.0031 Score=53.96 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=18.3
Q ss_pred CeEEEEecCCchHHHHHHHH
Q 048774 44 PMHVFAGFGGLGKTTLARLA 63 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~ 63 (519)
.+++|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46779999999999999998
No 251
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.01 E-value=0.014 Score=52.40 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhh---hc-CCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRV---QN-HFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~ 84 (519)
...+++|.|++|+|||||++.++..... .. .-..++|++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3467889999999999999998651111 11 1245777776543
No 252
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.01 E-value=0.0057 Score=56.81 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|+|++|+||||||+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999987
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.99 E-value=0.023 Score=54.15 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
...+++|.|.+|+||||+|..++.. ...+=..++|++... +..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 4578889999999999999888763 222224567777654 456666666544
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.97 E-value=0.0071 Score=58.08 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=29.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC-C-ceEEEEEcCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-D-LKAWTCVSDDF 85 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~ 85 (519)
....+.|+|++|+|||||++.+.+ .+.... + .++++-+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 457788999999999999999886 443322 2 24456777653
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.97 E-value=0.00075 Score=59.69 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445777999999999999998876
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0039 Score=53.88 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46888999999999999999876
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.94 E-value=0.0037 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.7
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999876
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.94 E-value=0.013 Score=55.22 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC-CHHHHHHHHHHHhhccC--CCCCCCHHHH-HHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF-DVIRLTKTILTSIVTHQ--NVDNLNLNKL-QEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~--~~~~~~~~~~-~~~l~ 117 (519)
...++.|+|++|+||||++..++. .....-..+.+++..... ...+.+...+.....+. .....+.... .+.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 456778999999999999999887 443332345555554321 11122233344333221 1122233332 23455
Q ss_pred HHhcCCeEEEEecCc
Q 048774 118 KQLSGKKFLLVLDDV 132 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv 132 (519)
..+..+.-++|+|-.
T Consensus 181 ~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 545555568888976
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.92 E-value=0.0039 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 45788999999999999999987
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.88 E-value=0.019 Score=53.87 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhc-CCCceEEEEEcCC-CCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQN-HFDLKAWTCVSDD-FDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 119 (519)
...+++|+|++|+||||++..++. .... .=..+..++.... ....+.+.......+.+.. ...+...+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~- 179 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL- 179 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-
Confidence 456888999999999999998886 3332 1124555554432 2222223322222222211 12233444444443
Q ss_pred hcCCeEEEEecCc
Q 048774 120 LSGKKFLLVLDDV 132 (519)
Q Consensus 120 l~~~~~LlvlDdv 132 (519)
+ .+.=++|+|-.
T Consensus 180 ~-~~~dlvIiDT~ 191 (296)
T 2px0_A 180 F-SEYDHVFVDTA 191 (296)
T ss_dssp G-GGSSEEEEECC
T ss_pred h-cCCCEEEEeCC
Confidence 3 33458888954
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.88 E-value=0.014 Score=62.88 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=33.3
Q ss_pred cccccceeeeEeecCCCCC----------CCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 19 DVFPCRKQAFIWAASPEET----------MPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~----------~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+|.++.++.|...+.. ..-.....++|+|++|+||||||+.++.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4567888777766543211 1123456788999999999999999987
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.88 E-value=0.0035 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.7
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4677999999999999999875
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.84 E-value=0.0046 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....+++|+|++|+||||+++.+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567888999999999999999876
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.84 E-value=0.0053 Score=53.61 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++++|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 567889999999999999999886
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=0.0046 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346888999999999999999986
No 266
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.80 E-value=0.016 Score=57.44 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCC-CceEEEEEcCCC-CHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-DLKAWTCVSDDF-DVIRLTKTI 94 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i 94 (519)
.+..+|.|++|+|||||++.+.. ....++ ...+++.+++.. ...++...+
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHh
Confidence 45678999999999999999987 333333 445666677653 233444434
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.80 E-value=0.023 Score=55.61 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhh----hcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC--------CCCCCH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRV----QNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN--------VDNLNL 109 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 109 (519)
...++.|.|++|+|||||+..++-.... ...-..++|++.........+ ..+++.+..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 4568889999999999999966421111 112246888887665444433 234444432110 011222
Q ss_pred HH---HHHHHHHHh-cCCeEEEEecCcc
Q 048774 110 NK---LQEELNKQL-SGKKFLLVLDDVW 133 (519)
Q Consensus 110 ~~---~~~~l~~~l-~~~~~LlvlDdv~ 133 (519)
+. ....+...+ ..+.-++|+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 222223332 3467799999973
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.79 E-value=0.0046 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999876
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.76 E-value=0.005 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.75 E-value=0.00086 Score=67.78 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=39.7
Q ss_pred hhhhhhccccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 10 SDALEAAAHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 10 ~~~l~~~~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+.......++|+++.+..+...+. ....++|+|++|+|||+||+.+++
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~-----~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAAL-----SGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHH-----HTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh-----cCCeeEeecCchHHHHHHHHHHHH
Confidence 345555666888999998877765443 235778999999999999999987
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.75 E-value=0.0056 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457888999999999999999986
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.74 E-value=0.031 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++++|++|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 356777999999999999988876
No 273
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.71 E-value=0.043 Score=55.83 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=36.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
...+++|.|.+|+||||+|..++.. .... =..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 4568889999999999999888763 3222 23577887765 355666655543
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.69 E-value=0.0053 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+++|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45777999999999999999876
No 275
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.69 E-value=0.0012 Score=64.40 Aligned_cols=56 Identities=21% Similarity=0.081 Sum_probs=37.6
Q ss_pred hhhhhhccccccccceeeeEeecCCCC------------CCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 10 SDALEAAAHDVFPCRKQAFIWAASPEE------------TMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 10 ~~~l~~~~~~~f~gR~~~~~~l~~~~~------------~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++.+.....+..+|.++.++.+...+. .........++|+|++|+|||++|+.+++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 444555555667788777666544330 11112346778999999999999999987
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.68 E-value=0.031 Score=52.19 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC---CCceEEEEEcCCCCHHHHHHHHHHHh------hccCCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH---FDLKAWTCVSDDFDVIRLTKTILTSI------VTHQNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~il~~l------~~~~~~~~~~~~~~ 112 (519)
.+.+++|.|++|+||||||+.+.. ..... ...+..|+...-.-.......+.... .....+...+.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~--~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 445677999999999999998876 32221 22344435444332233333332221 11112345566666
Q ss_pred HHHHHHHhcC
Q 048774 113 QEELNKQLSG 122 (519)
Q Consensus 113 ~~~l~~~l~~ 122 (519)
.+.+.....+
T Consensus 108 ~~~l~~l~~g 117 (290)
T 1odf_A 108 QEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHhhcc
Confidence 6666555443
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.68 E-value=0.0054 Score=54.01 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346778999999999999999987
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.67 E-value=0.0059 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45778999999999999999875
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.67 E-value=0.0059 Score=53.73 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456888999999999999999986
No 280
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.66 E-value=0.019 Score=46.48 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=36.1
Q ss_pred EEeecCcccc--ccCccccCCCcCcEEeccCCCCcccCcc-hhcCCCCcEEeccCCC
Q 048774 433 IFSLRGYHIS--ELPDSVGDLRYLRHLNLSRTEIKTLPES-VSKLYNLHTLLLEDCR 486 (519)
Q Consensus 433 ~L~l~~~~~~--~lp~~~~~l~~L~~l~l~~~~i~~lp~~-~~~l~~L~~l~l~~~~ 486 (519)
.++.+++.++ .+|..+ ..+|+.|+|++|.|+.+|.. |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5667777776 777543 34677788888887777664 4567778888887764
No 281
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.65 E-value=0.006 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+.++|+|++|+||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346788999999999999999886
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.63 E-value=0.0072 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999998876
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.62 E-value=0.0057 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5788999999999999999886
No 284
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.62 E-value=0.022 Score=66.21 Aligned_cols=85 Identities=18% Similarity=0.061 Sum_probs=54.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
+.+.+.|+|++|+|||+||.++... ...+=..++|++.....+... ++.++.... ......+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4678889999999999999988773 233324577888777655554 334432211 02234455555555
Q ss_pred HHhc-CCeEEEEecCcc
Q 048774 118 KQLS-GKKFLLVLDDVW 133 (519)
Q Consensus 118 ~~l~-~~~~LlvlDdv~ 133 (519)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 466799999993
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.62 E-value=0.0055 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=20.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 286
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.60 E-value=0.042 Score=54.87 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSDDFDVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~ 97 (519)
...+++|.|.+|+||||+|..++.. .... =..++|++... +..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECCC--CHHHHHHHHHHH
Confidence 4568889999999999999888763 3221 23577877764 455666665543
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.60 E-value=0.0062 Score=52.95 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5778999999999999999986
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.59 E-value=0.0069 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346888999999999999999875
No 289
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.54 E-value=0.011 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999987
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.53 E-value=0.0098 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.4
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.+.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999987
No 291
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.48 E-value=0.0012 Score=63.30 Aligned_cols=44 Identities=18% Similarity=0.015 Sum_probs=34.1
Q ss_pred cccccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 17 AHDVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 17 ~~~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+.++|+++++..+...+.. ...++++|++|+|||+||+.+.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~-----~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT-----GGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH-----TCCEEEESCCCHHHHHHHHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc-----CCeEEEECCCCCcHHHHHHHHHH
Confidence 346678999988777554431 35678999999999999999987
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.46 E-value=0.0081 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 293
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.43 E-value=0.06 Score=53.88 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=34.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTIL 95 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 95 (519)
...+++|.|.+|+||||||..++...... .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 45688899999999999999888732211 123577777654 3455555544
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.43 E-value=0.0087 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.40 E-value=0.018 Score=55.47 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=29.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC---C-CceEEEEEcCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH---F-DLKAWTCVSDDF 85 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~---f-~~~~wv~~~~~~ 85 (519)
...++.|+|++|+|||||+..++........ . ..++|++.....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 4467779999999999999988762110111 1 234888776543
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.36 E-value=0.0077 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46788999999999999999876
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.34 E-value=0.0082 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999876
No 298
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.33 E-value=0.01 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=20.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+++|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999876
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.33 E-value=0.0074 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46788999999999999997554
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.32 E-value=0.014 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+++.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45677999999999999999987
No 301
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.31 E-value=0.007 Score=56.63 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445777999999999999999875
No 302
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.30 E-value=0.017 Score=61.54 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=42.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
.++-+.++|++|+|||.+|+++++ ..... ++.+. .. .++... -......+.......-+
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~v~----~~----~l~s~~------vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----GP----ELLTMW------FGESEANVREIFDKARQ 568 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEECC----HH----HHHTTT------CSSCHHHHHHHHHHHHT
T ss_pred CCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEEec----cc----hhhccc------cchHHHHHHHHHHHHHH
Confidence 445677999999999999999998 32222 22222 11 122211 12223333333333335
Q ss_pred CCeEEEEecCccc
Q 048774 122 GKKFLLVLDDVWN 134 (519)
Q Consensus 122 ~~~~LlvlDdv~~ 134 (519)
..+++|+||+++.
T Consensus 569 ~~P~IifiDEiDs 581 (806)
T 3cf2_A 569 AAPCVLFFDELDS 581 (806)
T ss_dssp TCSEEEECSCGGG
T ss_pred cCCceeechhhhH
Confidence 6799999999963
No 303
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.28 E-value=0.02 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999886
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.27 E-value=0.0086 Score=51.34 Aligned_cols=21 Identities=52% Similarity=0.650 Sum_probs=19.3
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.26 E-value=0.012 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346788999999999999999987
No 306
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.25 E-value=0.0072 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446777999999999999999886
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.24 E-value=0.0098 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|+|++|+||||+|+.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677999999999999999886
No 308
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.21 E-value=0.0097 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-.+++|.|++|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 309
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.20 E-value=0.067 Score=53.25 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTIL 95 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 95 (519)
+..+++|.|.+|+||||+|..++.. ....=..++|++...+ ..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSSC--TTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCCC--HHHHHHHHH
Confidence 4568889999999999999888773 2222235777776654 334444443
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.20 E-value=0.01 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677999999999999998875
No 311
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.20 E-value=0.012 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999999876
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.20 E-value=0.0085 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=19.7
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999998875
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999886
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.16 E-value=0.0074 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=16.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999875
No 315
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.15 E-value=0.069 Score=52.83 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCC-CHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDF-DVIRLTKTILTS 97 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~il~~ 97 (519)
..+.+.|.|.+|+|||+|+.++.+ .+. .+-+.++++-+++.. ...++.+.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 456678999999999999999886 332 233567778888764 445566666543
No 316
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.12 E-value=0.01 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999876
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.11 E-value=0.0098 Score=54.50 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||||+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 577999999999999999876
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.10 E-value=0.0096 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35677999999999999999886
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.07 E-value=0.011 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445677999999999999999986
No 320
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.07 E-value=0.012 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|+.|+|||||++.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456888999999999999999876
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.07 E-value=0.011 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.180 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45777999999999999999876
No 322
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.07 E-value=0.097 Score=52.01 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh-cCCCceEEEEEcCCC-CHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ-NHFDLKAWTCVSDDF-DVIRLTKTILT 96 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~il~ 96 (519)
..+-+.|.|.+|+|||+|+.++.+ .+. .+-+.++++-+++.. ...++...+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 456778999999999999998887 332 334677888888775 45556666654
No 323
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.06 E-value=0.01 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4677999999999999999987
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.04 E-value=0.027 Score=48.88 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.02 E-value=0.011 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.4
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3677999999999999999974
No 326
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.013 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999876
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.00 E-value=0.014 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999886
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.99 E-value=0.056 Score=53.30 Aligned_cols=39 Identities=18% Similarity=0.031 Sum_probs=27.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
.+.+++++|++|+||||++..++. .....=..+..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecC
Confidence 456777999999999999998886 333332344455544
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.96 E-value=0.014 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35677999999999999999876
No 330
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.95 E-value=0.014 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457888999999999999999876
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.95 E-value=0.048 Score=63.48 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=56.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|+|++|+||||||..++. .....-..++|++.....+... ++.++.... .+..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456888999999999999999887 3333334688888887765432 344443221 13345666666665
Q ss_pred HHh-cCCeEEEEecCccc
Q 048774 118 KQL-SGKKFLLVLDDVWN 134 (519)
Q Consensus 118 ~~l-~~~~~LlvlDdv~~ 134 (519)
... ....-++|+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34566999999853
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.94 E-value=0.012 Score=51.74 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 467999999999999999886
No 333
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.93 E-value=0.088 Score=49.98 Aligned_cols=56 Identities=23% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC-CCHHHHHHHHHHHhh
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD-FDVIRLTKTILTSIV 99 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~ 99 (519)
++.+++|+|+.|+||||+++.++. ..+..-..+.++...-. ....+.+....+.++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag--~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN--WLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 456777999999999999999886 33332223444443322 223333344444444
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.92 E-value=0.014 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999999875
No 335
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.92 E-value=0.015 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46788999999999999999886
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.91 E-value=0.012 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.6
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++|.|++|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999999875
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.88 E-value=0.013 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++++|.|++|+||||+|+.+++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457888999999999999998886
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.88 E-value=0.014 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999998875
No 339
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.86 E-value=0.015 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+++|.|++|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999984
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.85 E-value=0.014 Score=51.58 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|+.|+||||+++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999975
No 341
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.82 E-value=0.023 Score=45.97 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred cEEeccCCCCc--ccCcchhcCCCCcEEeccCCCchhHhHHh-hcccccCCEEEccCCC
Q 048774 455 RHLNLSRTEIK--TLPESVSKLYNLHTLLLEDCRRLKKLCAA-MGNLIKLHHLNNSNTD 510 (519)
Q Consensus 455 ~~l~l~~~~i~--~lp~~~~~l~~L~~l~l~~~~~~~~lp~~-~~~l~~L~~l~l~~~~ 510 (519)
..++-+++.++ .+|..+. .+|+.|+|++| .+..+|.. |..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8887642 47999999998 77888765 7889999999999997
No 342
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.82 E-value=0.015 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.7
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999998876
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.80 E-value=0.015 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 577999999999999998875
No 344
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.76 E-value=0.048 Score=62.59 Aligned_cols=86 Identities=19% Similarity=0.067 Sum_probs=56.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCC----CCCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQN----VDNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l~ 117 (519)
...++.|+|++|+||||||..++. .....-..++|++.....+... +..++.... ....+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 566888999999999999998877 3333335788988887766532 344433221 12345566666655
Q ss_pred HHh-cCCeEEEEecCccc
Q 048774 118 KQL-SGKKFLLVLDDVWN 134 (519)
Q Consensus 118 ~~l-~~~~~LlvlDdv~~ 134 (519)
... ..+.-++|+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 444 34556999999843
No 345
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.76 E-value=0.026 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|.|+.|+|||||+..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46778999999999999999987
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.74 E-value=0.015 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.73 E-value=0.014 Score=53.41 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 344677999999999999998876
No 348
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.71 E-value=0.012 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++|+|++|+|||++|..+++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999988887
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.71 E-value=0.015 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45677999999999999999876
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.70 E-value=0.016 Score=55.88 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=58.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLSG 122 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (519)
..+++|+|+.|+||||+.+.+.. .+.......+ +++..+.... .... ........ ...+.......+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~-~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQRE-VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEE-BTTTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEE-EEccCcHHhh--hhcc-ccceeeee-eccccCCHHHHHHHHhhh
Confidence 45788999999999999999876 3332222222 2232221110 0000 00000000 011112344578888889
Q ss_pred CeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhHH
Q 048774 123 KKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEVA 166 (519)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~ 166 (519)
.+=+|++|+..+ ......+.... ..|..+++|+-..+..
T Consensus 196 ~PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999943 22222222221 1255688887765443
No 351
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.63 E-value=0.02 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCeEEEEecCCchHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAY 64 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~ 64 (519)
..+++|+|++|+||||+|+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4467799999999999999887
No 352
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.62 E-value=0.12 Score=51.07 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC-CCceEEEEEcC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH-FDLKAWTCVSD 83 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~ 83 (519)
.++++.++|.+|+||||++..++. ..... =..+..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCC
Confidence 456777999999999999988886 44433 23455566554
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.62 E-value=0.027 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++.|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456888999999999999999886
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.61 E-value=0.065 Score=52.72 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
...+++|+|++|+||||++..++. .....-..+..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeecc
Confidence 346777999999999999998886 333332345555543
No 355
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.60 E-value=0.087 Score=49.88 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=27.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
...++.|+|++|+||||++..++. .....-..+.+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 456788999999999999998886 444332345555544
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.58 E-value=0.012 Score=52.26 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.2
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 577999999999999999876
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.57 E-value=0.017 Score=51.39 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.57 E-value=0.013 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+++|.|++|+||||+|+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677999999999999999876
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.56 E-value=0.017 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..++|.|++|+||||+|+.+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999875
No 360
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.51 E-value=0.03 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.8
Q ss_pred CCeEEEEecCCchHHHHHHHHh
Q 048774 43 EPMHVFAGFGGLGKTTLARLAY 64 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~ 64 (519)
.+.++|.|+.|+||||+.....
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4678899999999998765544
No 361
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.49 E-value=0.09 Score=49.19 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=45.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHH-HHHHHHHHHhhccCC--CCCCCHHHHHH-HHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVI-RLTKTILTSIVTHQN--VDNLNLNKLQE-ELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~--~~~~~~~~~~~-~l~ 117 (519)
...+++|+|++|+||||++..++. .....-..+.+++........ ..+..+........- ....+...+.. .+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346777899999999999999886 433332345555543322111 112223333222111 01234444433 333
Q ss_pred HHhcCCeEEEEecCc
Q 048774 118 KQLSGKKFLLVLDDV 132 (519)
Q Consensus 118 ~~l~~~~~LlvlDdv 132 (519)
.....+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332244457888976
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.49 E-value=0.018 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35777999999999999998875
No 363
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.49 E-value=0.014 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=16.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHh-C
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAY-N 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~-~ 65 (519)
...+++|+|+.|+|||||++.+. .
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34688899999999999999998 5
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.49 E-value=0.018 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 445777999999999999998876
No 365
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.031 Score=50.65 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=28.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD 83 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 83 (519)
...+++|.|++|+||||||..++. .....-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC
Confidence 456888999999999999988765 2222224677777554
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.46 E-value=0.018 Score=51.14 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 367
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.45 E-value=0.052 Score=46.91 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCCCCCCCeEEEEecCCchHHHHHHHHhCC
Q 048774 36 ETMPEWPEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 36 ~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
...+......++|.|.+|+|||||++.+...
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3334445567779999999999999999874
No 368
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.45 E-value=0.027 Score=56.53 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|.|++|+|||+++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4788999999999999988887
No 369
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.44 E-value=0.019 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.4
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|+.|+||||+|+.+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4666999999999999999876
No 370
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.41 E-value=0.076 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|+|++|+||||++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 57888999999999999998876
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.40 E-value=0.022 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999985
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.37 E-value=0.021 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.4
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-++|+|++|+||||||+.++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.36 E-value=0.02 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|++|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45777999999999999999886
No 374
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.34 E-value=0.023 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999987
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.34 E-value=0.022 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|++|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.32 E-value=0.022 Score=47.84 Aligned_cols=23 Identities=39% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 377
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.31 E-value=0.024 Score=55.06 Aligned_cols=109 Identities=10% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceE-EEEEcCCCCHHHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKA-WTCVSDDFDVIRLTKTILTSIV-THQNVDNLNLNKLQEELNKQ 119 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~~l~~~ 119 (519)
...+++|+|+.|+||||+++.+.. .+.....+.+ ++.. +.... .. .... .....-..+...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~--~~e~~--~~---~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED--PIEYV--FK---HKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEES--SCCSC--CC---CSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecc--cHhhh--hc---cCceEEEeeecCCCHHHHHHHHHHH
Confidence 345788999999999999999886 3332212333 3221 11100 00 0000 00000000112234567777
Q ss_pred hcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchh
Q 048774 120 LSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHE 164 (519)
Q Consensus 120 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 164 (519)
+...+=+|++|.+.+ ........... ..|..++.|+-..+
T Consensus 206 L~~~pd~illdE~~d--~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCS--HHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCC--HHHHHHHHHHH---hcCCEEEEEECcch
Confidence 777788999999842 22222222222 23555666665433
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.26 E-value=0.018 Score=54.60 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.4
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|.|+.|+||||||..+++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 379
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.25 E-value=0.072 Score=49.88 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=27.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCC-ceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD-LKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~ 82 (519)
...+++|.|++|+|||||+..++. .....-. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCc
Confidence 456888999999999999999886 3332222 46666554
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.24 E-value=0.022 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.3
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999998864
No 381
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.22 E-value=0.025 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457888999999999999998874
No 382
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.20 E-value=0.027 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457888999999999999999886
No 383
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.18 E-value=0.025 Score=53.49 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=40.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCC--CceEEEEEcCCC-CHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF--DLKAWTCVSDDF-DVIRLTKTILTSIVTHQNVDNLNLNKLQEELNK 118 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 118 (519)
.+.+++|.|++|+||||+|+.+.. ...... ..+..+...... ....+ .. .........+...+.+.+...+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~--ll~~~~~~~~v~~i~~D~f~~~~~~l-~~-~~~~~~~g~P~~~D~~~l~~~L~~ 166 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA--LLSRWPDHPNVEVITTDGFLYSNAKL-EK-QGLMKRKGFPESYDMPSLLRVLNA 166 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH--HHTTSTTCCCEEEEEGGGGBCCHHHH-HH-TTCGGGTTSGGGBCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HhcccCCCCeEEEEeecccccchhhh-hh-HHHHhhccCcccccHHHHHHHHHh
Confidence 344667999999999999998875 332211 234444443322 22221 11 000111112345666777776666
Q ss_pred HhcCC
Q 048774 119 QLSGK 123 (519)
Q Consensus 119 ~l~~~ 123 (519)
...++
T Consensus 167 L~~g~ 171 (321)
T 3tqc_A 167 IKSGQ 171 (321)
T ss_dssp HHTTC
T ss_pred hhccc
Confidence 65554
No 384
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.021 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.9
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++.|+|++|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999999886
No 385
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.15 E-value=0.063 Score=53.43 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCeEEEEecCCchHHHHH-HHHhCChhhhcCCC-ceEEEEEcCCC-CHHHHHHHHHHHhhc--c----CCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFD-LKAWTCVSDDF-DVIRLTKTILTSIVT--H----QNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~--~----~~~~~~~~~~~ 112 (519)
..+...|.|.+|+|||+|| ..+.+ .. .-+ .++++-+++.. ...++.+.+...=.. . ...+.......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIIN--QK--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHT--TT--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHH--hh--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 4566779999999999996 56766 22 234 34677787764 344555555432110 0 11111111111
Q ss_pred -----HHHHHHHh--cCCeEEEEecCc
Q 048774 113 -----QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11223333 478999999998
No 386
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.13 E-value=0.12 Score=48.25 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=47.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCC-HHHHHHHHHHHhhccCC--CCCCCHHHHHHHHHHH
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFD-VIRLTKTILTSIVTHQN--VDNLNLNKLQEELNKQ 119 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~--~~~~~~~~~~~~l~~~ 119 (519)
..+++++|++|+||||++..++. .....-..+.+++...... ....+.......+.+.. ....+.........+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 45777999999999999998886 3333323456666554322 22223333333322211 1223444444444444
Q ss_pred hc-CCeEEEEecCc
Q 048774 120 LS-GKKFLLVLDDV 132 (519)
Q Consensus 120 l~-~~~~LlvlDdv 132 (519)
++ ...=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33337888876
No 387
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.12 E-value=0.034 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 345777999999999999999987
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.09 E-value=0.062 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35677999999999999999987
No 389
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.09 E-value=0.023 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35778999999999999999886
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.07 E-value=0.03 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|++|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35677999999999999999986
No 391
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.05 E-value=0.03 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999886
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.03 E-value=0.026 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.6
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999876
No 393
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.02 E-value=0.024 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++|.|++|+||||||.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35677999999999999999987
No 394
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.99 E-value=0.069 Score=53.09 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=48.9
Q ss_pred CCCeEEEEecCCchHHHHH-HHHhCChhhhcCCC-ceEEEEEcCCC-CHHHHHHHHHHHhhcc------CCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFD-LKAWTCVSDDF-DVIRLTKTILTSIVTH------QNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~ 112 (519)
..+...|.|.+|+|||+|| ..+.+ .. +-+ .++++-+++.. ...++.+.+...=... ...+.......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 4566789999999999996 46665 22 334 34677787764 3444555554321100 01111112211
Q ss_pred -----HHHHHHHh--cCCeEEEEecCc
Q 048774 113 -----QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l--~~~~~LlvlDdv 132 (519)
.-.+.+++ .++++|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11223333 478999999998
No 395
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.99 E-value=0.029 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|.|+.|+||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3778999999999999999876
No 396
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.98 E-value=0.028 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.6
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++++|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46788999999999999999886
No 397
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.97 E-value=0.022 Score=54.69 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCCCeEEEEecCCchHHHHHHHHhCChhhhcCC-C-ceEEEEEcCC
Q 048774 41 WPEPMHVFAGFGGLGKTTLARLAYNDDRVQNHF-D-LKAWTCVSDD 84 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~ 84 (519)
+..+...|.|.+|+|||+|+.++.+ .+.... + .++++-+++.
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~--~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIAN--GIAENHPDTIRIILLIDER 216 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHH--HHHHHCTTSEEEEEECSCC
T ss_pred cCCceEEEecCCCCChhHHHHHHHH--HHhhcCCCeEEEEEEeccC
Confidence 3566778999999999999998887 443322 2 2355666654
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.94 E-value=0.027 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.9
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999876
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.94 E-value=0.03 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|+|++|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999886
No 400
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.94 E-value=0.088 Score=51.74 Aligned_cols=89 Identities=11% Similarity=0.125 Sum_probs=50.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCC----ceEEEEEcCCC-CHHHHHHHHHHH--hhcc----CCCCCCCHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFD----LKAWTCVSDDF-DVIRLTKTILTS--IVTH----QNVDNLNLN 110 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~il~~--l~~~----~~~~~~~~~ 110 (519)
..+.+.|.|.+|+|||+|+.++.+ ....+-+ .++++-+++.. ...++.+.+... +... ...+.....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~--~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIAR--QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHH--HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHH--HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 345567899999999999998887 2222223 56677777653 445555555432 1111 011111122
Q ss_pred HH-----HHHHHHHhc---CCeEEEEecCc
Q 048774 111 KL-----QEELNKQLS---GKKFLLVLDDV 132 (519)
Q Consensus 111 ~~-----~~~l~~~l~---~~~~LlvlDdv 132 (519)
.. .-.+.++++ ++++|+++||+
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11 122334443 68999999998
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.93 E-value=0.029 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 048774 46 HVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 46 ~~I~G~~G~GKTtLa~~~~~ 65 (519)
++|.|++|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876
No 402
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.92 E-value=0.033 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999987
No 403
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.90 E-value=0.026 Score=52.48 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.4
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
-++|+|++|+||||||+.++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 378999999999999999987
No 404
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.89 E-value=0.03 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345777999999999999998876
No 405
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.87 E-value=0.035 Score=50.97 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=55.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNVDNLNLNKLQEELNKQLS 121 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (519)
+..+++|+|+.|+||||+++.+.. .+...+.+.+++.-....... +... .+..+..... +...+...+.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~---~~~~-~~v~q~~~gl-~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVF---KHKK-SIVNQREVGE-DTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCC---CCSS-SEEEEEEBTT-TBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeec---CCcc-eeeeHHHhCC-CHHHHHHHHHHHHh
Confidence 346888999999999999999886 333222344433321110000 0000 0000000000 01223455666666
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecchhH
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNHEV 165 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~ 165 (519)
.++=++++|+.. +........... ..|.-|++|+-+...
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 677789999984 222222222221 235567777766543
No 406
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.83 E-value=0.03 Score=49.34 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEEecCCchHHHHHHHHhC
Q 048774 45 MHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+++|.|++|+||+|+|+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999998886
No 407
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.83 E-value=0.026 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=19.7
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999999999875
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.83 E-value=0.033 Score=49.98 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.+++|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999876
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.82 E-value=0.088 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|.|+.|+||||+++.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999987
No 410
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.81 E-value=0.1 Score=59.97 Aligned_cols=84 Identities=17% Similarity=0.046 Sum_probs=58.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC----CCCCHHHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV----DNLNLNKLQEELN 117 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 117 (519)
..+++-|+|+.|+||||||.++.. ..+..=...+|++..+..+... ++.++..... .+...++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 456777999999999999999887 4444446778888887766553 5665554431 3445566666666
Q ss_pred HHhcC-CeEEEEecCc
Q 048774 118 KQLSG-KKFLLVLDDV 132 (519)
Q Consensus 118 ~~l~~-~~~LlvlDdv 132 (519)
..++. ..-++|+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 66654 4559999998
No 411
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.80 E-value=0.063 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.050 Sum_probs=19.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+.+|+|+.|+||||++..++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35778999999999999976665
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.80 E-value=0.087 Score=47.38 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.9
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+||||+++.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999987
No 413
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.75 E-value=0.028 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.0
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
++++|+|+.|+||||||..++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999999886
No 414
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.74 E-value=0.034 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.6
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|+|+.|+|||||++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 4677999999999999998886
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.74 E-value=0.035 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456888999999999999999886
No 416
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.72 E-value=0.028 Score=54.79 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=37.6
Q ss_pred hhhhhhccccccccceeeeEeecCCCC----C-----------------------CCCCCCCeEEEEecCCchHHHHHHH
Q 048774 10 SDALEAAAHDVFPCRKQAFIWAASPEE----T-----------------------MPEWPEPMHVFAGFGGLGKTTLARL 62 (519)
Q Consensus 10 ~~~l~~~~~~~f~gR~~~~~~l~~~~~----~-----------------------~~~~~~~~~~I~G~~G~GKTtLa~~ 62 (519)
.+.+.....+.++|.++..+.|...+. . ........++|+|++|+|||++|+.
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 445555556667788777766654320 0 0011345678999999999999999
Q ss_pred HhC
Q 048774 63 AYN 65 (519)
Q Consensus 63 ~~~ 65 (519)
+++
T Consensus 92 la~ 94 (376)
T 1um8_A 92 LAK 94 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 417
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.69 E-value=0.018 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=17.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345778999999999999999876
No 418
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.68 E-value=0.038 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999986
No 419
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.65 E-value=0.097 Score=51.42 Aligned_cols=87 Identities=10% Similarity=0.112 Sum_probs=63.8
Q ss_pred ccCCcccEEeecCcccc-----ccC-ccccCCCcCcEEeccCCCCcccC-cchhcCCCCcEEeccCCCchhHhHH-hhcc
Q 048774 426 FKLQRLRIFSLRGYHIS-----ELP-DSVGDLRYLRHLNLSRTEIKTLP-ESVSKLYNLHTLLLEDCRRLKKLCA-AMGN 497 (519)
Q Consensus 426 ~~l~~L~~L~l~~~~~~-----~lp-~~~~~l~~L~~l~l~~~~i~~lp-~~~~~l~~L~~l~l~~~~~~~~lp~-~~~~ 497 (519)
..+.+|+.+.+.++.+. .++ ..+..+++|+.+.+.. .++.++ ..|..+.+|+.+.+..+ +..++. .|.+
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~ 344 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN 344 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC
Confidence 37888999988887654 343 4567788899999884 477554 46778899999999764 555543 4778
Q ss_pred cccCCEEEccCCCCCCCCCC
Q 048774 498 LIKLHHLNNSNTDSLEEMPV 517 (519)
Q Consensus 498 l~~L~~l~l~~~~~l~~lP~ 517 (519)
+ +|+.+++++|. +..++.
T Consensus 345 ~-~L~~l~l~~n~-~~~l~~ 362 (401)
T 4fdw_A 345 T-GIKEVKVEGTT-PPQVFE 362 (401)
T ss_dssp S-CCCEEEECCSS-CCBCCC
T ss_pred C-CCCEEEEcCCC-Cccccc
Confidence 7 99999999886 555543
No 420
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.63 E-value=0.088 Score=45.96 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEE
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWT 79 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 79 (519)
.++|-|+.|+||||.++.+.+ .....-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEE
Confidence 356899999999999999987 444443334333
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.62 E-value=0.062 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=18.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|.|+.|+||||+++.+.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999987
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.023 Score=49.34 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
....++|.|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456779999999999999998763
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.60 E-value=0.033 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=19.9
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4778999999999999998876
No 424
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.58 E-value=0.039 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.5
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+++|.|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7888999999999999999986
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.57 E-value=0.19 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+...++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456888999999999999999876
No 426
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.55 E-value=0.17 Score=49.70 Aligned_cols=111 Identities=10% Similarity=0.095 Sum_probs=70.2
Q ss_pred hhhhcCCCCceecccccccCCCCCCCchhhhhhc-cCCcccEEeecCccccccCc-cccCCCcCcEEeccCCCCccc-Cc
Q 048774 393 EKLYDIQHLRTFLPVMLSNSLDGYLAPSILTELF-KLQRLRIFSLRGYHISELPD-SVGDLRYLRHLNLSRTEIKTL-PE 469 (519)
Q Consensus 393 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~l~l~~~~i~~l-p~ 469 (519)
..+..|++|+.+.+..+... ......++...+ .+.+|+.+.+. +.++.++. .+..+.+|+.+.+..+ ++.+ +.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~--~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFN--DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCC--CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred hHhhCCCCCCEEEeCCcccc--CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 45667788887776554311 000112444444 88889999888 45777753 5667788999988654 6644 44
Q ss_pred chhcCCCCcEEeccCCCchhHhH-Hhhcccc-cCCEEEccCC
Q 048774 470 SVSKLYNLHTLLLEDCRRLKKLC-AAMGNLI-KLHHLNNSNT 509 (519)
Q Consensus 470 ~~~~l~~L~~l~l~~~~~~~~lp-~~~~~l~-~L~~l~l~~~ 509 (519)
.|..+ +|+.+++.+|. ...++ ..|..++ ++..|++..+
T Consensus 341 aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred hCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence 67777 89999998873 33333 3355554 6777776543
No 427
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.55 E-value=0.041 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457888999999999999999875
No 428
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.55 E-value=0.042 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 457888999999999999999886
No 429
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.54 E-value=0.039 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457888999999999999999876
No 430
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.51 E-value=0.098 Score=52.12 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCchHHHHH-HHHhCChhhhc------CCC-ceEEEEEcCCC-CHHHHHHHHHHHhh--c----cCCCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLA-RLAYNDDRVQN------HFD-LKAWTCVSDDF-DVIRLTKTILTSIV--T----HQNVDN 106 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~------~f~-~~~wv~~~~~~-~~~~~~~~il~~l~--~----~~~~~~ 106 (519)
..+...|.|.+|+|||+|| ..+.+ .... +-+ .++++-+++.. ...++.+.+...=. . ....+.
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~--q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~ 238 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIIN--QKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASD 238 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH--THHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTS
T ss_pred cCCEEEEecCCCCCchHHHHHHHHH--HHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCC
Confidence 4566779999999999995 45665 2221 234 46778888764 34455555543210 0 001111
Q ss_pred CCHHHH-----HHHHHHHh--cCCeEEEEecCc
Q 048774 107 LNLNKL-----QEELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 107 ~~~~~~-----~~~l~~~l--~~~~~LlvlDdv 132 (519)
...... .-.+.+++ .++++|+++||+
T Consensus 239 p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 239 AAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111111 11223333 478999999998
No 431
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.49 E-value=0.15 Score=50.56 Aligned_cols=87 Identities=13% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCeEEEEecCCchHHHHH-HHHhCChhhhcCCC-ceEEEEEcCCC-CHHHHHHHHHHHhhcc------CCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFD-LKAWTCVSDDF-DVIRLTKTILTSIVTH------QNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~ 112 (519)
..+...|.|.+|+|||+|| ..+.+ . .+-+ .++++-+++.. ...++.+.+...=... ...+.......
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n--~--~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIIN--Q--RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHT--T--SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHh--h--ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 4566789999999999996 56665 2 2233 35788888764 3445555543321000 01111111111
Q ss_pred H-----HHHHHHh--cCCeEEEEecCc
Q 048774 113 Q-----EELNKQL--SGKKFLLVLDDV 132 (519)
Q Consensus 113 ~-----~~l~~~l--~~~~~LlvlDdv 132 (519)
. -.+.+++ .++++|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1 1122222 479999999998
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.44 E-value=0.042 Score=50.59 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457888999999999999999986
No 433
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.44 E-value=0.067 Score=50.51 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
..+++.|+|-||+||||.+..+.. -....=..+.-+++...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 457888999999999999977665 33333345777777743
No 434
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.44 E-value=0.045 Score=50.22 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456888999999999999999986
No 435
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.43 E-value=0.045 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999886
No 436
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.43 E-value=0.037 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++++|.|+.|+||||||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35788999999999999999886
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.42 E-value=0.057 Score=49.48 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++++.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 344566999999999999999875
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.42 E-value=0.044 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|.|+.|+|||||.+.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999987
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.41 E-value=0.044 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999986
No 440
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.40 E-value=0.089 Score=46.65 Aligned_cols=38 Identities=16% Similarity=-0.044 Sum_probs=25.5
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
.+++.|.||+||||+|..+.. .....=..+..+++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCCC
Confidence 356999999999999887776 33322224555666554
No 441
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.39 E-value=0.047 Score=46.87 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.5
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.+|+|+.|+|||||+.+++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
No 442
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.044 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456888999999999999999986
No 443
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.023 Score=58.87 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=35.6
Q ss_pred hhhccccccccceeeeEeecCCCCCCCC--------CCCCeEEEEecCCchHHHHHHHHhC
Q 048774 13 LEAAAHDVFPCRKQAFIWAASPEETMPE--------WPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 13 l~~~~~~~f~gR~~~~~~l~~~~~~~~~--------~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+........+|.+.....+...+..+.. .....+.++|++|+|||+||+.+++
T Consensus 289 l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 289 IISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp HHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred HHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 4444556677888877777554442210 0111577999999999999999887
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.37 E-value=0.046 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457888999999999999999876
No 445
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.36 E-value=0.045 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999986
No 446
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.35 E-value=0.045 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456888999999999999999986
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.35 E-value=0.047 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999987
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.33 E-value=0.072 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+||||+++.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445777999999999999999987
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.32 E-value=0.07 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+|||||+..++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345778999999999999999886
No 450
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.29 E-value=0.19 Score=50.57 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=34.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCC-HHHHHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFD-VIRLTKTI 94 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 94 (519)
..+...|.|.+|+|||+|+.++.+. .+-+.++++-+++... ..++...+
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566779999999999999998751 2335677888887754 34444443
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.28 E-value=0.041 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346888999999999999999876
No 452
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.25 E-value=0.048 Score=49.74 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457888999999999999999887
No 453
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.25 E-value=0.36 Score=48.57 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEc
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVS 82 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 82 (519)
..+++.|+|.+|+||||++..++. .....=..+..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEecc
Confidence 345777999999999999999886 333321234555554
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.25 E-value=0.034 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345778999999999999998876
No 455
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.24 E-value=0.067 Score=53.24 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCCchHHHHH-HHHhCChhhhcCCC-ceEEEEEcCCC-CHHHHHHHH
Q 048774 41 WPEPMHVFAGFGGLGKTTLA-RLAYNDDRVQNHFD-LKAWTCVSDDF-DVIRLTKTI 94 (519)
Q Consensus 41 ~~~~~~~I~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i 94 (519)
+..+..+|.|.+|+|||+|| ..+.+ .. .-+ .++++-+++.. ...++.+.+
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~ 213 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILN--QQ--GQNVICVYVAIGQKASSVAQVVTNF 213 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHT--CC--TTTCEEEEEEESCCHHHHHHHHHHT
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHH--hh--cCCcEEEEEEcCCCchHHHHHHHHH
Confidence 34566679999999999996 57776 22 234 35777777764 333444444
No 456
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.23 E-value=0.048 Score=50.62 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 457888999999999999988875
No 457
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.23 E-value=0.05 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457888999999999999999876
No 458
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.21 E-value=0.054 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446788999999999999999887
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.15 E-value=0.051 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 356888999999999999999987
No 460
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.12 E-value=0.051 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+..+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 457888999999999999999876
No 461
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.06 E-value=0.036 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||++.+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46788999999999999998875
No 462
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.00 E-value=0.055 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456888999999999999999986
No 463
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.98 E-value=0.049 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.3
Q ss_pred eEEEEecCCchHHHHHHHHhCC
Q 048774 45 MHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
-++|.|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3569999999999999999873
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.96 E-value=0.055 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457888999999999999999986
No 465
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.95 E-value=0.11 Score=51.19 Aligned_cols=91 Identities=10% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh--------cCCC-ceEEEEEcCCC-CHHHHHHHHHHH--hhcc----CCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ--------NHFD-LKAWTCVSDDF-DVIRLTKTILTS--IVTH----QNVD 105 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~~~----~~~~ 105 (519)
..+.+.|.|.+|+|||+|+.++++..... ++-+ .++++-+++.. ...++.+.+... +... ...+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 34556789999999999999888732211 1111 56677777653 444555554332 1110 0112
Q ss_pred CCCHHHH-----HHHHHHHhc---CCeEEEEecCc
Q 048774 106 NLNLNKL-----QEELNKQLS---GKKFLLVLDDV 132 (519)
Q Consensus 106 ~~~~~~~-----~~~l~~~l~---~~~~LlvlDdv 132 (519)
....... .-.+.++++ ++++|+++||+
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 2222222 122334443 68999999998
No 466
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.94 E-value=0.089 Score=52.02 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcC--CCceEEEEEcCCC-CHHHHHHHHHHHhhcc------CCCCCCCHHHH
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNH--FDLKAWTCVSDDF-DVIRLTKTILTSIVTH------QNVDNLNLNKL 112 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~~ 112 (519)
..+-++|.|.+|+|||+|+.++++.....+. =+.++++-+++.. ...++.+.+...=... ...+.......
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 3455668999999999999988873322111 1256677777653 4555665555431110 01111111111
Q ss_pred -----HHHHHHHhc---CCeEEEEecCc
Q 048774 113 -----QEELNKQLS---GKKFLLVLDDV 132 (519)
Q Consensus 113 -----~~~l~~~l~---~~~~LlvlDdv 132 (519)
.-.+.++++ ++++|+++||+
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 122333433 68999999998
No 467
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.88 E-value=0.22 Score=44.79 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=54.2
Q ss_pred eEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhc---c-CC-----------CCCCCH
Q 048774 45 MHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVT---H-QN-----------VDNLNL 109 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~---~-~~-----------~~~~~~ 109 (519)
-++|+|+.|.|||.+|..+.. .. . ..++++. .. ..+..++.+.+.. . .. ......
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~--~~--~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~ 179 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAIN--EL--S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTY 179 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHH--HS--C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEH
T ss_pred CEEEEeCCCCCHHHHHHHHHH--Hc--C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeH
Confidence 377999999999999987765 22 1 2233332 22 2333333333322 1 00 000112
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 110 NKLQEELNKQLSGKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 110 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
+.+..... .+.++--+||+|+++......+..+...++ ...++++|....
T Consensus 180 ~~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSATp~ 229 (237)
T 2fz4_A 180 DSAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTATFE 229 (237)
T ss_dssp HHHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEESCC
T ss_pred HHHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecCCC
Confidence 23322222 333445699999997655445555544443 345677776653
No 468
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.86 E-value=0.12 Score=45.33 Aligned_cols=110 Identities=14% Similarity=-0.002 Sum_probs=50.0
Q ss_pred CCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCCCHHHHHHHHHHHhhccCCC-CCCCHHHHHHHHHHHhc
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDFDVIRLTKTILTSIVTHQNV-DNLNLNKLQEELNKQLS 121 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~ 121 (519)
..+.+++|+-|.||||.|..... +...+-..++.+..... ...-...+...++..... ...+.++ +...+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~~----~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASKD----IFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEECC-------------------CCEEECSSGGG----GGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHHH----HHHHHh
Confidence 45777999999999999987776 33333223333332211 111112333333322110 1111111 122222
Q ss_pred CCeEEEEecCccccCccchhhhccccCCCCCCcEEEEEecch
Q 048774 122 GKKFLLVLDDVWNRNYDDWVDFSRPLGASAQGSKIIVSTRNH 163 (519)
Q Consensus 122 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 163 (519)
++--+|++|.+.-.+....+. ...+.. .+..||+|-++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~-l~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEV-VQVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHH-HHHHHH--TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHH-HHHHhh--CCCEEEEEeccc
Confidence 333499999996543333322 222222 267899998864
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.85 E-value=0.054 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|+|++|+|||.+|..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999886
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.80 E-value=0.064 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+||||+++.+..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45777999999999999998875
No 471
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.78 E-value=0.065 Score=51.40 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 457888999999999999999986
No 472
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.68 E-value=0.057 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..++|.|+.|+||||+++.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4677999999999999999886
No 473
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.64 E-value=0.061 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++|+|.+|+|||||+..+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45677999999999999999886
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.63 E-value=0.033 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|.|+.|+||||+|+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345777999999999999998876
No 475
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.62 E-value=0.019 Score=59.89 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred cccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 19 DVFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 19 ~~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
+.++|.+..++.+..... ....++|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~-----~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAAN-----QKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHH-----TTCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhcccccc-----CCCEEEEEeCCCCCHHHHHHHHhc
Confidence 345677777666644333 235778999999999999999987
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.60 E-value=0.13 Score=49.05 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDDF 85 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 85 (519)
..+++++.|.||+||||+|..++. .....-..++-++.....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCC
Confidence 357788999999999999988776 333333456677766443
No 477
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.58 E-value=0.062 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHhCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
..++|.|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 34679999999999999999863
No 478
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.57 E-value=0.092 Score=45.39 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.4
Q ss_pred CCCCCeEEEEecCCchHHHHHHHHhCC
Q 048774 40 EWPEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 40 ~~~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
......++|.|.+|+|||||.+.+...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334567779999999999999999864
No 479
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.57 E-value=0.13 Score=49.33 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhh--cCCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQ--NHFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~ 84 (519)
..+++++.|.||+||||+|..++. ... ..=..++-++....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCC
Confidence 457888999999999999988876 444 33345667777644
No 480
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.56 E-value=0.061 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.1
Q ss_pred eEEEEecCCchHHHHHHHHhCC
Q 048774 45 MHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.++|.|+.|+|||||++.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4569999999999999998763
No 481
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.53 E-value=0.074 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...++.|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 456788999999999999999887
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.52 E-value=0.075 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||++.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456888999999999999999986
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.43 E-value=0.076 Score=48.12 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSDD 84 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 84 (519)
...+++|.|.+|+|||++|..++... ....-..+++++....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 45688899999999999998876421 2222345666666543
No 484
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.34 E-value=0.073 Score=44.86 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.5
Q ss_pred CeEEEEecCCchHHHHHHHHhC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.-++|.|++|+||||+|.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5667999999999999998876
No 485
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.31 E-value=0.058 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++++|++|+|||++|+.++.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999999999987
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.30 E-value=0.074 Score=46.79 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=22.7
Q ss_pred CeEEEEecCCchHHHHHHHHhCChhhhcCCC
Q 048774 44 PMHVFAGFGGLGKTTLARLAYNDDRVQNHFD 74 (519)
Q Consensus 44 ~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~ 74 (519)
+.++|-|+.|+||||+++.+.. .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 4678999999999999999887 4444443
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.26 E-value=0.071 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++++|++|+||||+|+.+.+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44677999999999999999986
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.24 E-value=0.11 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
....++|.|.+|+|||||.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4566779999999999999999763
No 489
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.21 E-value=0.071 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.4
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.+.++|+|.+|+|||||+..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45777999999999999999886
No 490
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.15 E-value=0.034 Score=53.51 Aligned_cols=43 Identities=14% Similarity=-0.039 Sum_probs=28.9
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|.+.....+..... ......++|+|++|+|||++|+.+++
T Consensus 25 ~i~G~~~~~~~l~~~~~---~~~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAV---DPGIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHH---CGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhh---CCCCceEEEECCCCccHHHHHHHHHH
Confidence 46788876544322111 11223478999999999999999986
No 491
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.15 E-value=0.069 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEecCCchHHHHHHHHhCC
Q 048774 45 MHVFAGFGGLGKTTLARLAYND 66 (519)
Q Consensus 45 ~~~I~G~~G~GKTtLa~~~~~~ 66 (519)
.++|.|+.|+|||||.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4569999999999999998763
No 492
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.14 E-value=0.09 Score=52.47 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHhCChhhhcCCCceEEEEEcC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYNDDRVQNHFDLKAWTCVSD 83 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 83 (519)
...+++|+|+.|+|||||++.+.. .++.. .+.+++....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~-~G~V~l~g~D 330 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFEQQ-GKSVMLAAGD 330 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEECCC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhhhc-CCeEEEecCc
Confidence 456788999999999999999886 33322 3445554333
No 493
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.14 E-value=0.08 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 457888999999999999999986
No 494
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.14 E-value=0.55 Score=45.70 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccccceeeeEeecCCCCCCCCCCCCeEEEEecCCchHHHHHHHHhC
Q 048774 20 VFPCRKQAFIWAASPEETMPEWPEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 20 ~f~gR~~~~~~l~~~~~~~~~~~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
.++|....+..+......... ....+.|+|.+|+|||++|+.++.
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~-~~~~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC-AECPVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT-CCSCEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC-CCCCeEEecCCCcCHHHHHHHHHH
Confidence 355655544444332222122 234458999999999999998875
No 495
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.07 E-value=0.086 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.+..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 457888999999999999999986
No 496
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.01 E-value=0.088 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 457888999999999999999986
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.99 E-value=0.086 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.8
Q ss_pred CCeEEEEecCCchHHHHHHHHhC
Q 048774 43 EPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 43 ~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
..+++|.|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46888999999999999999986
No 498
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.99 E-value=0.089 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|.|+.|+|||||.+.++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 457888999999999999999886
No 499
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.97 E-value=0.086 Score=50.91 Aligned_cols=24 Identities=42% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
....++|+|+.|+|||||++.+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 346888999999999999999987
No 500
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.96 E-value=0.13 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHhC
Q 048774 42 PEPMHVFAGFGGLGKTTLARLAYN 65 (519)
Q Consensus 42 ~~~~~~I~G~~G~GKTtLa~~~~~ 65 (519)
...+++|+|.+|+|||||+..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445777999999999999998875
Done!