BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048775
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 31/228 (13%)
Query: 2 GPWKHAHATFYTGDTGS----FGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEI 57
G W A AT+Y G+ GGACG +V Y T + +F +G CG+C+E+
Sbjct: 17 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76
Query: 58 KCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAE--- 114
+C + P+ C ++++T N+ P + HFD++ AF +A+
Sbjct: 77 RCKEKPE-CSGNPVTVYITDMNYEPIAPY--------------HFDLSGKAFGSLAKPGL 121
Query: 115 ----YKAGIVPVAYRRVSCKKQGGIKFTITGTQ----HWTLVTIWNVGGAGDISHVEVKG 166
GI+ V +RRV CK G K + ++ V + V GDI +E++
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181
Query: 167 DNKLNWTPLHKNWGSKWQTSCSLEEES-LTFKVTTSDGRFVISPNVTP 213
W P+ +WG+ W+ + + + ++T+ G+ VI+ +V P
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIP 229
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 109/238 (45%), Gaps = 34/238 (14%)
Query: 4 WKHAHATFYTGDTGS----FGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKC 59
W A +T+Y TG+ GGACGY DV + + T +T +F +G CG+CFEIKC
Sbjct: 19 WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78
Query: 60 IDDPKSCIPGQPSLF-VTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAE---- 114
P++C G+P + +T N P + HFD++ AF +A+
Sbjct: 79 T-KPEAC-SGEPVVVHITDDNEEPIAPY--------------HFDLSGHAFGAMAKKGDE 122
Query: 115 ---YKAGIVPVAYRRVSCKKQGGIKFTI----TGTQHWTLVTIWNVGGAGDISHVEVKGD 167
AG + + +RRV CK G K T ++ + + V G GD+ V++K
Sbjct: 123 QKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK 182
Query: 168 NKLNWTPLHKNWGSKWQTSCSLEEES-LTFKVTTSDGRFVISPNVTPNKYWKYGQTFE 224
K W L ++WG+ W+ + T + TT G + +V P WK ++E
Sbjct: 183 GKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEG-WKADTSYE 239
>pdb|3U65|B Chain B, The Crystal Structure Of Tat-P(T) (Tp0957)
pdb|3U65|A Chain A, The Crystal Structure Of Tat-P(T) (Tp0957)
Length = 328
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 74 FVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQ- 132
+ T CP +DG W P + D A + + A + R S Q
Sbjct: 217 YALDTKICPAVIGMLISDGSWARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQK 276
Query: 133 GGIKFTITGTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWTPLHK 177
G+ Q + W A D+ ++ + LN T K
Sbjct: 277 AGVSIVHLTPQE---IQEWRTEFAADVKRIQARLPGMLNMTLYEK 318
>pdb|4DI3|D Chain D, Crystal Structure Of A 2:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
pdb|4DI3|E Chain E, Crystal Structure Of A 2:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
pdb|4DI4|B Chain B, Crystal Structure Of A 3:1 Complex Of Treponema Pallidum
Tatp(T) (Tp0957) Bound To Tatt (Tp0956)
Length = 324
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 74 FVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQ- 132
+ T CP +DG W P + D A + + A + R S Q
Sbjct: 213 YALDTKICPAVIGMLISDGSWARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQK 272
Query: 133 GGIKFTITGTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWTPLHK 177
G+ Q + W A D+ ++ + LN T K
Sbjct: 273 AGVSIVHLTPQE---IQEWRTEFAADVKRIQARLPGMLNMTLYEK 314
>pdb|2GWG|A Chain A, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66.
pdb|2GWG|B Chain B, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66
Length = 350
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 62 DPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYK 116
DPK+CIP + V F N + D + G W +PP I YP ++ E +
Sbjct: 120 DPKTCIP-ELEKCVKEYGFVAINLNPDPSGGHWTSPPLTD-RIWYPIYEKXVELE 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,517,917
Number of Sequences: 62578
Number of extensions: 377212
Number of successful extensions: 694
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 9
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)