Query 048775
Match_columns 229
No_of_seqs 145 out of 1023
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 2.6E-71 5.6E-76 480.9 26.2 224 2-228 28-256 (256)
2 PLN00050 expansin A; Provision 100.0 4.2E-71 9.1E-76 477.7 25.1 223 2-228 23-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 7.7E-63 1.7E-67 425.9 23.9 208 2-229 23-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 1.3E-27 2.9E-32 194.2 18.5 191 5-229 31-231 (232)
5 smart00837 DPBB_1 Rare lipopro 100.0 2.5E-28 5.3E-33 180.9 8.2 87 37-124 1-87 (87)
6 PLN03024 Putative EG45-like do 99.9 9E-27 1.9E-31 183.0 11.5 101 4-126 21-125 (125)
7 PLN00115 pollen allergen group 99.9 2.3E-24 5E-29 167.4 11.1 88 134-228 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.5E-23 3.3E-28 153.8 9.8 78 135-213 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 7.3E-20 1.6E-24 132.7 6.0 75 37-124 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 3.8E-11 8.3E-16 91.8 4.3 59 48-129 57-119 (119)
11 TIGR00413 rlpA rare lipoprotei 98.2 2.4E-05 5.2E-10 66.3 11.0 96 7-133 1-97 (208)
12 PF07249 Cerato-platanin: Cera 98.1 1.5E-05 3.2E-10 62.3 8.3 66 36-128 44-113 (119)
13 COG0797 RlpA Lipoproteins [Cel 98.1 3E-05 6.4E-10 66.8 9.8 60 51-130 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.6 0.00073 1.6E-08 61.9 11.5 94 5-128 79-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 92.8 0.13 2.8E-06 43.6 3.7 54 37-107 70-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 71.1 6.1 0.00013 31.2 3.8 48 158-205 42-106 (131)
17 KOG4192 Uncharacterized conser 68.0 31 0.00066 27.2 6.9 82 95-178 37-125 (134)
18 cd02854 Glycogen_branching_enz 65.6 17 0.00038 27.1 5.1 48 159-207 16-76 (99)
19 PRK10564 maltose regulon perip 64.7 23 0.00051 32.0 6.6 77 122-228 48-127 (303)
20 cd02110 SO_family_Moco_dimer S 60.9 18 0.00039 32.8 5.3 49 157-205 236-293 (317)
21 cd02113 bact_SoxC_Moco bacteri 43.6 39 0.00085 30.8 4.6 51 155-205 236-294 (326)
22 PLN00177 sulfite oxidase; Prov 39.0 82 0.0018 29.6 6.0 27 151-177 290-316 (393)
23 PF10417 1-cysPrx_C: C-termina 36.9 19 0.0004 22.5 1.0 12 210-222 10-21 (40)
24 cd02114 bact_SorA_Moco sulfite 36.1 99 0.0021 28.7 6.0 51 155-205 286-345 (367)
25 cd02111 eukary_SO_Moco molybdo 35.7 1E+02 0.0022 28.6 6.1 55 151-205 270-339 (365)
26 PF12863 DUF3821: Domain of un 35.4 2.3E+02 0.005 24.3 7.7 88 100-208 48-146 (209)
27 PRK13701 psiB plasmid SOS inhi 29.1 2.2E+02 0.0047 22.9 6.0 44 117-164 57-104 (144)
28 cd02855 Glycogen_branching_enz 28.5 2.1E+02 0.0045 20.5 5.7 34 173-206 49-85 (106)
29 PRK10301 hypothetical protein; 26.2 98 0.0021 24.1 3.7 27 114-140 95-124 (124)
30 TIGR02588 conserved hypothetic 24.9 1.7E+02 0.0036 23.0 4.7 33 134-167 35-73 (122)
31 COG2372 CopC Uncharacterized p 24.5 1.1E+02 0.0023 24.3 3.5 27 114-140 96-125 (127)
32 cd02112 eukary_NR_Moco molybdo 23.6 2.7E+02 0.0058 26.1 6.6 21 157-177 300-320 (386)
33 cd02861 E_set_proteins_like E 23.1 1.7E+02 0.0038 20.4 4.3 45 160-206 14-60 (82)
34 PF04234 CopC: CopC domain; I 21.4 91 0.002 22.8 2.5 26 115-140 69-97 (97)
35 PF06290 PsiB: Plasmid SOS inh 20.8 3.1E+02 0.0068 22.1 5.5 45 117-165 57-105 (143)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.6e-71 Score=480.85 Aligned_cols=224 Identities=52% Similarity=1.071 Sum_probs=211.9
Q ss_pred CCceEeEEEEeCCC--CCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcC--CCCCccCCCCcEEEEE
Q 048775 2 GPWKHAHATFYTGD--TGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCID--DPKSCIPGQPSLFVTA 77 (229)
Q Consensus 2 ~~w~~g~aT~Y~~~--~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~--~p~~C~~g~~sv~v~v 77 (229)
++|++|+||||+++ .|+++|||||+++..++++.++||+|++||++|+.||+||||+|.. .++.|.+| ++|+|+|
T Consensus 28 ~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~sV~Vt~ 106 (256)
T PLN00193 28 SGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-ASVTITA 106 (256)
T ss_pred CCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-CeEEEEE
Confidence 58999999999976 5678999999998888899999999999999999999999999952 36789877 5999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEeeeecCCceEEEEcCCCCeEEEEEEeeCCCc
Q 048775 78 TNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQGGIKFTITGTQHWTLVTIWNVGGAG 157 (229)
Q Consensus 78 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~~~g~i~~~~~~~~~w~~v~v~n~~g~~ 157 (229)
||+||+++.+|++|++||++++.|||||.+||.+||....|+|+|+||||+|.++|+|+|++++++||++|+|.|++|++
T Consensus 107 td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~g 186 (256)
T PLN00193 107 TNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAG 186 (256)
T ss_pred ecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCcCCcEEcccCCCCeEEeCCCCCCcceEEEEEecCCeEEEecCceeCCCCCCCcEEec-ccC
Q 048775 158 DISHVEVKGDNKLNWTPLHKNWGSKWQTSCSLEEESLTFKVTTSDGRFVISPNVTPNKYWKYGQTFEG-LNF 228 (229)
Q Consensus 158 ~I~svev~~~~~~~W~~m~r~~g~~W~~~~~l~~~p~~vrvTs~~G~~v~~~~vip~~~w~~g~~y~~-~qf 228 (229)
+|++|+||++++ .|++|+|+||++|+++.+|.++||+||||+.+|+++++.|||| ++|++|+||++ +||
T Consensus 187 dV~~v~Ik~~~~-~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viP-a~W~~G~ty~s~vqf 256 (256)
T PLN00193 187 SIQSVSIKGSKT-GWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVP-ANWGFGQTFSSSVQF 256 (256)
T ss_pred cEEEEEEecCCC-CeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeC-CCCCCCCeEecCccC
Confidence 999999999875 8999999999999999888888999999999999999999999 99999999998 698
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=4.2e-71 Score=477.74 Aligned_cols=223 Identities=58% Similarity=1.182 Sum_probs=211.7
Q ss_pred CCceEeEEEEeCCC--CCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEc
Q 048775 2 GPWKHAHATFYTGD--TGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATN 79 (229)
Q Consensus 2 ~~w~~g~aT~Y~~~--~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D 79 (229)
.+|..++|||||++ .|+++|||||+++..++++.++||+|++||++|+.||+||||+|.+.+..|.++ +|+|+|||
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g--sV~V~itd 100 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG--SIIITATN 100 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--cEEEEEec
Confidence 48999999999986 567899999999888889999999999999999999999999998766689876 89999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEeeeecCCceEEEEcCCCCeEEEEEEeeCCCcce
Q 048775 80 FCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQGGIKFTITGTQHWTLVTIWNVGGAGDI 159 (229)
Q Consensus 80 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~~~g~i~~~~~~~~~w~~v~v~n~~g~~~I 159 (229)
+||+++..|++|++||++++.|||||.+||.+||....|+|+|+||||+|.++|+|+|++++++||++|+|.|++|+++|
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi 180 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccE
Confidence 99999989999999999889999999999999999999999999999999999999999998889999999999999999
Q ss_pred EEEEEEcCCcCCcEEcccCCCCeEEeCCCCCCcceEEEEEecCCeEEEecCceeCCCCCCCcEEecccC
Q 048775 160 SHVEVKGDNKLNWTPLHKNWGSKWQTSCSLEEESLTFKVTTSDGRFVISPNVTPNKYWKYGQTFEGLNF 228 (229)
Q Consensus 160 ~svev~~~~~~~W~~m~r~~g~~W~~~~~l~~~p~~vrvTs~~G~~v~~~~vip~~~w~~g~~y~~~qf 228 (229)
++|+||++++ .|++|+|+||++|+++.+|.++||+||||+.+|++|++.|||| ++||+|+||+++||
T Consensus 181 ~~V~ikg~~~-~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~P-a~W~~G~ty~~~~f 247 (247)
T PLN00050 181 VAVSIKGSKS-NWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAP-SNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEEecCCC-CeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeC-CCCCCCCeEecCcC
Confidence 9999999875 8999999999999998888878999999999999999999999 99999999999998
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=7.7e-63 Score=425.94 Aligned_cols=208 Identities=26% Similarity=0.601 Sum_probs=187.3
Q ss_pred CCceEeEEEEeCCC--CCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEc
Q 048775 2 GPWKHAHATFYTGD--TGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATN 79 (229)
Q Consensus 2 ~~w~~g~aT~Y~~~--~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D 79 (229)
++|++++|||||++ .|+.+|||||+++..+.++.++||+| +||++|++||+||||+|.+ +..|.++ +|+|+|||
T Consensus 23 ~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~--~v~V~iTd 98 (247)
T PLN03023 23 QDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDD--GVNVVVTD 98 (247)
T ss_pred CCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCC--CeEEEEEe
Confidence 47999999999987 56789999999988888899999999 9999999999999999976 6789876 89999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhcc-------ccCceeeEEEEEeeeecCC-ceEEEEc--C-CCCeEEE
Q 048775 80 FCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAE-------YKAGIVPVAYRRVSCKKQG-GIKFTIT--G-TQHWTLV 148 (229)
Q Consensus 80 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~~~i~wr~V~C~~~g-~i~~~~~--~-~~~w~~v 148 (229)
.||. + +.|||||.+||.+||. ...|+|+|+||||+|.++| +|+|+|+ + +++|++|
T Consensus 99 ~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~v 164 (247)
T PLN03023 99 YGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAI 164 (247)
T ss_pred CCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEE
Confidence 9985 3 6899999999999998 4679999999999999999 9999998 3 3789999
Q ss_pred EEEeeCCCcceEEEEEEcCCcCCcEEcccCCCCeEEeCCCCCCcceEEEE--EecCCeE-EEecCceeCCCCCCCcEEec
Q 048775 149 TIWNVGGAGDISHVEVKGDNKLNWTPLHKNWGSKWQTSCSLEEESLTFKV--TTSDGRF-VISPNVTPNKYWKYGQTFEG 225 (229)
Q Consensus 149 ~v~n~~g~~~I~svev~~~~~~~W~~m~r~~g~~W~~~~~l~~~p~~vrv--Ts~~G~~-v~~~~vip~~~w~~g~~y~~ 225 (229)
+|.|++|+++|++||||++++..|++|+|+||++|+++.+|++ ||+||+ |..+|++ |+++|||| ++||+|+||++
T Consensus 165 lv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViP-a~Wk~G~TY~s 242 (247)
T PLN03023 165 VMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIP-SDWKAGVAYDS 242 (247)
T ss_pred EEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeC-CCCCCCCEEec
Confidence 9999999999999999997767899999999999999988997 555555 5557755 88999999 99999999998
Q ss_pred -ccCC
Q 048775 226 -LNFR 229 (229)
Q Consensus 226 -~qf~ 229 (229)
+||+
T Consensus 243 ~vq~~ 247 (247)
T PLN03023 243 NIQLD 247 (247)
T ss_pred ccccC
Confidence 6995
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.3e-27 Score=194.22 Aligned_cols=191 Identities=24% Similarity=0.366 Sum_probs=158.5
Q ss_pred eEeEEEEeCCCCCCCcCccCCCCCCCCCCCCeEEEeChhccCCC----ccCCceEEEEEcCCCCCccCCCCcEEEEEEcC
Q 048775 5 KHAHATFYTGDTGSFGGACGYSDVTREGYGEGTTALSTTLFHNG----AACGACFEIKCIDDPKSCIPGQPSLFVTATNF 80 (229)
Q Consensus 5 ~~g~aT~Y~~~~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~ 80 (229)
..|.|||-+.+ ..+||-... +.+.+..+.||++++-+-| +.-|+.+||.+ |+ | +.+|.|+|+
T Consensus 31 f~G~ATyTgsG--YsGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---PK----G--~TTVYVTDl 96 (232)
T COG4305 31 FEGYATYTGSG--YSGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---PK----G--KTTVYVTDL 96 (232)
T ss_pred cceeEEEeccc--ccCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---CC----C--ceEEEEecc
Confidence 46888887764 467887643 3345666999999988764 67999999997 43 5 789999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEeeeecCCceEEEEc--CCCCeEEEEEEeeCCCcc
Q 048775 81 CPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQGGIKFTIT--GTQHWTLVTIWNVGGAGD 158 (229)
Q Consensus 81 Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~~~g~i~~~~~--~~~~w~~v~v~n~~g~~~ 158 (229)
.|++ .++.||||+.||.+|.++..|+|+|+||.|+-+..||+.+++| |+.||.+|||+|+. .+
T Consensus 97 YPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~--yP 161 (232)
T COG4305 97 YPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK--YP 161 (232)
T ss_pred cccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--Cc
Confidence 9993 3689999999999999999999999999999999999999999 68899999999998 89
Q ss_pred eEEEEEEcCCcCCcEEcccCCCCeEEeCCCCCCcceEEEEEecCCeEEEecC-ceeCCCCCCCcEEe--c-ccCC
Q 048775 159 ISHVEVKGDNKLNWTPLHKNWGSKWQTSCSLEEESLTFKVTTSDGRFVISPN-VTPNKYWKYGQTFE--G-LNFR 229 (229)
Q Consensus 159 I~svev~~~~~~~W~~m~r~~g~~W~~~~~l~~~p~~vrvTs~~G~~v~~~~-vip~~~w~~g~~y~--~-~qf~ 229 (229)
|.++|+.+.+ .|..|.+.+||+|.... |..+||.+|||++.|++|+..- .+| +.-. -..|. + +||+
T Consensus 162 V~KlE~~qdg--~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lp-k~as-SKaY~V~G~VQFs 231 (232)
T COG4305 162 VMKLEYEQDG--KWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLP-KSAS-SKAYTVPGHVQFS 231 (232)
T ss_pred eEEEEEecCC--eEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccc-cccc-CCceeecceeecC
Confidence 9999999987 69999999999998655 6666999999999999997644 555 3322 23454 4 6885
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.95 E-value=2.5e-28 Score=180.86 Aligned_cols=87 Identities=68% Similarity=1.347 Sum_probs=81.4
Q ss_pred EEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhcccc
Q 048775 37 TTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYK 116 (229)
Q Consensus 37 ~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~ 116 (229)
+||+|++||++|++||+||||+|.++|..|.++ ++|+|+|+|+||+++..|+++++||++++.|||||++||.+||...
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 489999999999999999999997667789887 5999999999999988899999999988999999999999999999
Q ss_pred CceeeEEE
Q 048775 117 AGIVPVAY 124 (229)
Q Consensus 117 ~G~~~i~w 124 (229)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 6
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.94 E-value=9e-27 Score=182.99 Aligned_cols=101 Identities=34% Similarity=0.619 Sum_probs=85.8
Q ss_pred ceEeEEEEeCCCCCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcCC----CCCccCCCCcEEEEEEc
Q 048775 4 WKHAHATFYTGDTGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCIDD----PKSCIPGQPSLFVTATN 79 (229)
Q Consensus 4 w~~g~aT~Y~~~~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~~----p~~C~~g~~sv~v~v~D 79 (229)
...|+||||++. ..|||+ ++ .+++.++||+|+++|++|+.||+||||+|.+. +..|.. ++|+|+|+|
T Consensus 21 ~~~G~AT~Y~~~---~~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~g--ksV~V~VtD 91 (125)
T PLN03024 21 ATPGIATFYTSY---TPSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTG--KSVTVKIVD 91 (125)
T ss_pred ccceEEEEeCCC---CCcccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccC--CeEEEEEEc
Confidence 457999999875 568994 43 24688999999999999999999999999652 246864 499999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEE
Q 048775 80 FCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRR 126 (229)
Q Consensus 80 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~ 126 (229)
+||+. |. .|||||++||++||+.+.|+++|+|.+
T Consensus 92 ~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 92 HCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 99952 74 599999999999999999999999974
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.91 E-value=2.3e-24 Score=167.38 Aligned_cols=88 Identities=18% Similarity=0.416 Sum_probs=79.4
Q ss_pred ceEEEEc--CCCCeEEEEEEeeCCCcceEEEEEEcCCcCCcE-EcccCCCCeEEeCC--CCCCcceEEEEEecCCeEEEe
Q 048775 134 GIKFTIT--GTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWT-PLHKNWGSKWQTSC--SLEEESLTFKVTTSDGRFVIS 208 (229)
Q Consensus 134 ~i~~~~~--~~~~w~~v~v~n~~g~~~I~svev~~~~~~~W~-~m~r~~g~~W~~~~--~l~~~p~~vrvTs~~G~~v~~ 208 (229)
+|+|+|+ ++++||++++ | ++|.+||||+.++..|+ +|+|+||++|+++. +|++ ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 8999999 4688997765 3 46999999999877999 99999999999754 6887 9999999999999999
Q ss_pred cCceeCCCCCCCcEEec-ccC
Q 048775 209 PNVTPNKYWKYGQTFEG-LNF 228 (229)
Q Consensus 209 ~~vip~~~w~~g~~y~~-~qf 228 (229)
+|||| ++||+|+||++ +||
T Consensus 99 ~nViP-a~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIP-ESFKAGSVYKTGIQV 118 (118)
T ss_pred CceEC-CCCCCCCEEeccccC
Confidence 99999 99999999998 697
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=1.5e-23 Score=153.76 Aligned_cols=78 Identities=40% Similarity=0.782 Sum_probs=65.6
Q ss_pred eEEEEc--CCCCeEEEEEEeeCCCcceEEEEEEcCCcCCcEEcccCCCCeEEeC-CCCCCcceEEEEEecC-CeEEEecC
Q 048775 135 IKFTIT--GTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWTPLHKNWGSKWQTS-CSLEEESLTFKVTTSD-GRFVISPN 210 (229)
Q Consensus 135 i~~~~~--~~~~w~~v~v~n~~g~~~I~svev~~~~~~~W~~m~r~~g~~W~~~-~~l~~~p~~vrvTs~~-G~~v~~~~ 210 (229)
|+|+|+ |++||++|+|.|++|.++|++|||+++++.+|++|+|+||++|+++ .+++ +||+||||+.+ |++|+++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence 689998 4799999999999999999999999998878999999999999998 5555 59999999977 99999999
Q ss_pred cee
Q 048775 211 VTP 213 (229)
Q Consensus 211 vip 213 (229)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.80 E-value=7.3e-20 Score=132.66 Aligned_cols=75 Identities=39% Similarity=0.844 Sum_probs=61.3
Q ss_pred EEEeChhccCCCccCCceEEEEEcCC-CCC--ccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhc
Q 048775 37 TTALSTTLFHNGAACGACFEIKCIDD-PKS--CIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIA 113 (229)
Q Consensus 37 ~aA~s~~~~~~g~~CG~C~~V~~~~~-p~~--C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 113 (229)
+||++..+|++|..||+||+++|... ... |..+.++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999321 222 765226999999999998 85 699999999999999
Q ss_pred cccCceeeEEE
Q 048775 114 EYKAGIVPVAY 124 (229)
Q Consensus 114 ~~~~G~~~i~w 124 (229)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.14 E-value=3.8e-11 Score=91.84 Aligned_cols=59 Identities=25% Similarity=0.580 Sum_probs=43.9
Q ss_pred CccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhcc----ccCceeeEE
Q 048775 48 GAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAE----YKAGIVPVA 123 (229)
Q Consensus 48 g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~~~i~ 123 (229)
...||+|++|+.... | .+++|+|+|+|+. ++|||.+.+|.+|-. ...|.+.|+
T Consensus 57 q~~CGkClrVTNt~t------g-a~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~ 113 (119)
T PF00967_consen 57 QDSCGKCLRVTNTAT------G-AQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVD 113 (119)
T ss_dssp GGGTT-EEEEE-TTT---------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEE
T ss_pred cccccceEEEEecCC------C-cEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEE
Confidence 468999999998652 4 7999999999986 489999999999953 367999999
Q ss_pred EEEeee
Q 048775 124 YRRVSC 129 (229)
Q Consensus 124 wr~V~C 129 (229)
|++|+|
T Consensus 114 y~fV~C 119 (119)
T PF00967_consen 114 YEFVDC 119 (119)
T ss_dssp EEEE--
T ss_pred EEEEcC
Confidence 999999
No 11
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.17 E-value=2.4e-05 Score=66.32 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=71.2
Q ss_pred eEEEEeCCC-CCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCC
Q 048775 7 AHATFYTGD-TGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNF 85 (229)
Q Consensus 7 g~aT~Y~~~-~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~ 85 (229)
|.|+|||.. .| ...|.|-.- . ...|+||-.+ ...|..++|+...+ | ++|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~G-~~TAnGe~y--~--~~~~tAAHkt------LPlgT~V~VtNl~n------g-rsviVrVnDRGPf~- 61 (208)
T TIGR00413 1 GLASWYGPKFHG-RKTANGEVY--N--MKALTAAHKT------LPFNTYVKVTNLHN------N-RSVIVRINDRGPFS- 61 (208)
T ss_pred CEEeEeCCCCCC-CcCCCCeec--C--CCcccccccc------CCCCCEEEEEECCC------C-CEEEEEEeCCCCCC-
Confidence 689999975 11 224443221 1 2345666543 46799999998753 4 79999999999972
Q ss_pred CCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEeeeecCC
Q 048775 86 HQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQG 133 (229)
Q Consensus 86 ~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~~~g 133 (229)
+..-+|||..|+.+|.-...|+.+|+.+.+......
T Consensus 62 ------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~~ 97 (208)
T TIGR00413 62 ------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKNG 97 (208)
T ss_pred ------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCCc
Confidence 246899999999999999999999999999877643
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.13 E-value=1.5e-05 Score=62.27 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=46.2
Q ss_pred eEEEeCh-hccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhcc
Q 048775 36 GTTALST-TLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAE 114 (229)
Q Consensus 36 ~~aA~s~-~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~ 114 (229)
.+.+.+. +-|+ ...||.|+|++-. + ++|.|..+|.=+ ..|+|+.+||+.|..
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~--------g-~si~vlaID~a~-----------------~gfnis~~A~n~LT~ 96 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYN--------G-RSIYVLAIDHAG-----------------GGFNISLDAMNDLTN 96 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEET--------T-EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHT
T ss_pred eeccccccccCC-CCCCCCeEEEEEC--------C-eEEEEEEEecCC-----------------CcccchHHHHHHhcC
Confidence 3555554 4464 5799999999972 3 699999999733 459999999999976
Q ss_pred ---ccCceeeEEEEEee
Q 048775 115 ---YKAGIVPVAYRRVS 128 (229)
Q Consensus 115 ---~~~G~~~i~wr~V~ 128 (229)
...|+|++++++|+
T Consensus 97 g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 97 GQAVELGRVDATYTQVD 113 (119)
T ss_dssp S-CCCC-EEE-EEEEE-
T ss_pred CcccceeEEEEEEEEcC
Confidence 35799999999996
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=3e-05 Score=66.82 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=52.1
Q ss_pred CCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEeeee
Q 048775 51 CGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVSCK 130 (229)
Q Consensus 51 CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~ 130 (229)
=|.-++|+..++ | ++|+|+|.|++|- . ....+|||..|+++|+-...|+.+|..+.+.+.
T Consensus 119 ~~t~v~VtNl~N------g-rsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN------G-RSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC------C-cEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 367889998764 5 7999999999995 2 246899999999999999999999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.62 E-value=0.00073 Score=61.88 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=65.0
Q ss_pred eEeEEEEeCCCCCCCcCccCCCCCCCCCCCCeEEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCC
Q 048775 5 KHAHATFYTGDTGSFGGACGYSDVTREGYGEGTTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPN 84 (229)
Q Consensus 5 ~~g~aT~Y~~~~g~~~GACGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~ 84 (229)
..|.|+|||....-...|.|- .++ ...|+||-.+ .-.|..++|+..++ | ++|+|+|.|++|-.
T Consensus 79 ~~G~ASwYg~~f~G~~TA~Ge--~~~--~~~~tAAH~t------LPlps~vrVtNl~n------g-rsvvVrVnDRGP~~ 141 (361)
T PRK10672 79 QAGLAAIYDAEAGSNLTASGE--RFD--PNALTAAHPT------LPIPSYVRVTNLAN------G-RMIVVRINDRGPYG 141 (361)
T ss_pred eEEEEEEeCCccCCCcCcCce--eec--CCcCeeeccC------CCCCCEEEEEECCC------C-cEEEEEEeCCCCCC
Confidence 369999999751001122221 111 2245666554 35688999998763 5 79999999999972
Q ss_pred CCCCCCCCCCCCCCCCcEEechhhhhhhccccCceeeEEEEEee
Q 048775 85 FHQDANDGGWCNPPREHFDIAYPAFKHIAEYKAGIVPVAYRRVS 128 (229)
Q Consensus 85 ~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~~~i~wr~V~ 128 (229)
+..-+|||..|+++|.-...+.|.|+.-.|.
T Consensus 142 -------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 142 -------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred -------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 2467999999999999877777777777663
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=92.77 E-value=0.13 Score=43.62 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=31.5
Q ss_pred EEEeChhccCCCccCCceEEEEEcCCCCCccCCCCcEEEEEEcCCCCCCCCCCCCCCCCCCCCCcEEechh
Q 048775 37 TTALSTTLFHNGAACGACFEIKCIDDPKSCIPGQPSLFVTATNFCPPNFHQDANDGGWCNPPREHFDIAYP 107 (229)
Q Consensus 37 ~aA~s~~~~~~g~~CG~C~~V~~~~~p~~C~~g~~sv~v~v~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 107 (229)
+||.+-.-......|++|||++-++.+- .| |+.+|++++.=-. -..+||||.-+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l---~G-KkmiVQ~tNtG~d-------------lg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL---KG-KKMIVQVTNTGGD-------------LGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT---TT--EEEEEEEEE-TT-------------TTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc---CC-CEeEEEecccCCC-------------CCCCeEEEEeC
Confidence 5555522112236799999999986432 24 8999999985322 13589999875
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=71.07 E-value=6.1 Score=31.18 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=28.3
Q ss_pred ceEEEEEEcCCcCCcEEcccCCCC-------------eEEeCC---CCCCc-ceEEEEEecCCeE
Q 048775 158 DISHVEVKGDNKLNWTPLHKNWGS-------------KWQTSC---SLEEE-SLTFKVTTSDGRF 205 (229)
Q Consensus 158 ~I~svev~~~~~~~W~~m~r~~g~-------------~W~~~~---~l~~~-p~~vrvTs~~G~~ 205 (229)
+|.+|||...++.+|++.....-. .|++.- .+.+. -+.+|-|+.+|.+
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 899999999888789876653221 355432 11331 4566667777743
No 17
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.01 E-value=31 Score=27.17 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=55.7
Q ss_pred CC-CCCCcEEechhhhhhhccccCceeeEEE-----EEeeeecCCceEEEEc-CCCCeEEEEEEeeCCCcceEEEEEEcC
Q 048775 95 CN-PPREHFDIAYPAFKHIAEYKAGIVPVAY-----RRVSCKKQGGIKFTIT-GTQHWTLVTIWNVGGAGDISHVEVKGD 167 (229)
Q Consensus 95 C~-~~~~~~DLs~~AF~~ia~~~~G~~~i~w-----r~V~C~~~g~i~~~~~-~~~~w~~v~v~n~~g~~~I~svev~~~ 167 (229)
|. ...-||-+...-|..|-+ ..=+..+.+ +-+.|..-|=-+|... |++|=.+|.+-=..+ +.+++|+++.-
T Consensus 37 cs~k~~~hfivpas~f~ll~g-~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~~~f 114 (134)
T KOG4192|consen 37 CSKKQNRHFIVPASRFVLLVG-AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVWEEF 114 (134)
T ss_pred hhhccceEEEEeccceEEEeC-cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEEEEe
Confidence 64 235799998888887754 122222222 3467877765667777 899999998865553 78999999986
Q ss_pred CcCCcEEcccC
Q 048775 168 NKLNWTPLHKN 178 (229)
Q Consensus 168 ~~~~W~~m~r~ 178 (229)
++.+|..+...
T Consensus 115 nGqdwe~~~e~ 125 (134)
T KOG4192|consen 115 NGQDWEATMEH 125 (134)
T ss_pred cCcchhHhhhc
Confidence 66578766543
No 18
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=65.56 E-value=17 Score=27.09 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=33.5
Q ss_pred eEEEEEEcCCcCCcE----EcccCCCCeEEeCCC---------CCCcceEEEEEecCCeEEE
Q 048775 159 ISHVEVKGDNKLNWT----PLHKNWGSKWQTSCS---------LEEESLTFKVTTSDGRFVI 207 (229)
Q Consensus 159 I~svev~~~~~~~W~----~m~r~~g~~W~~~~~---------l~~~p~~vrvTs~~G~~v~ 207 (229)
-++|+|.+.-. .|. +|.|...-.|++.-+ ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn-~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFN-NWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCC-CCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 45777776443 675 488877778976422 2466899999998888764
No 19
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.71 E-value=23 Score=32.04 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=49.5
Q ss_pred EEEEEeeeecCCceEEEEc-CCCCeEEEEEEeeCCCcceEEEEEEcCCcCCcEEcccCCCCeEEeCCCCCCcceEEEEEe
Q 048775 122 VAYRRVSCKKQGGIKFTIT-GTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWTPLHKNWGSKWQTSCSLEEESLTFKVTT 200 (229)
Q Consensus 122 i~wr~V~C~~~g~i~~~~~-~~~~w~~v~v~n~~g~~~I~svev~~~~~~~W~~m~r~~g~~W~~~~~l~~~p~~vrvTs 200 (229)
+.|..|. .+..+.|.+. +++.+ ...+|.+.|...+|-... ++++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan~-----------------------G~l~i~LsS 97 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPANI-----------------------GELTLTLSS 97 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEccccc-----------------------ccEEEEEEE
Confidence 5677775 4457888888 66665 222444666665554432 279999999
Q ss_pred -cCCeEEEecC-ceeCCCCCCCcEEecccC
Q 048775 201 -SDGRFVISPN-VTPNKYWKYGQTFEGLNF 228 (229)
Q Consensus 201 -~~G~~v~~~~-vip~~~w~~g~~y~~~qf 228 (229)
..++.|.+.+ +|-.++|++=++|.+.+|
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3333666655 444488999999987766
No 20
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=60.88 E-value=18 Score=32.75 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=32.5
Q ss_pred cceEEEEEEcCCcCCcEEcccCCCC-------eEEeCCCC-CC-cceEEEEEecCCeE
Q 048775 157 GDISHVEVKGDNKLNWTPLHKNWGS-------KWQTSCSL-EE-ESLTFKVTTSDGRF 205 (229)
Q Consensus 157 ~~I~svev~~~~~~~W~~m~r~~g~-------~W~~~~~l-~~-~p~~vrvTs~~G~~ 205 (229)
..|++|||...++.+|++..-.... .|++.-.+ .+ --+.+|.+|..|++
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 6799999999888799977654221 45554322 22 24667777877754
No 21
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=43.56 E-value=39 Score=30.85 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCcceEEEEEEcCCcCCcEEcccCC--C-C---eEEeCCCC-CC-cceEEEEEecCCeE
Q 048775 155 GAGDISHVEVKGDNKLNWTPLHKNW--G-S---KWQTSCSL-EE-ESLTFKVTTSDGRF 205 (229)
Q Consensus 155 g~~~I~svev~~~~~~~W~~m~r~~--g-~---~W~~~~~l-~~-~p~~vrvTs~~G~~ 205 (229)
|.+.|..|||...++.+|+...... + . .|.+.-.+ .+ --+-+|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 4467999999998887899765531 1 1 23332112 22 24666777777754
No 22
>PLN00177 sulfite oxidase; Provisional
Probab=39.00 E-value=82 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=20.1
Q ss_pred EeeCCCcceEEEEEEcCCcCCcEEccc
Q 048775 151 WNVGGAGDISHVEVKGDNKLNWTPLHK 177 (229)
Q Consensus 151 ~n~~g~~~I~svev~~~~~~~W~~m~r 177 (229)
...+|...|++|||...++.+|+....
T Consensus 290 Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 290 ALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EECCCCccEEEEEEEcCCCCCceeeee
Confidence 444443479999999988889997643
No 23
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=36.87 E-value=19 Score=22.49 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=9.9
Q ss_pred CceeCCCCCCCcE
Q 048775 210 NVTPNKYWKYGQT 222 (229)
Q Consensus 210 ~vip~~~w~~g~~ 222 (229)
.+.| +||++|.-
T Consensus 10 v~tP-anW~pGd~ 21 (40)
T PF10417_consen 10 VATP-ANWKPGDD 21 (40)
T ss_dssp SBBC-TTTCTTSG
T ss_pred cccC-cCCCCCCC
Confidence 4889 99999864
No 24
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=36.10 E-value=99 Score=28.68 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=31.6
Q ss_pred CCcceEEEEEEcCCcCCcEEcccC--CCC----eEEeCC-CC-CC-cceEEEEEecCCeE
Q 048775 155 GAGDISHVEVKGDNKLNWTPLHKN--WGS----KWQTSC-SL-EE-ESLTFKVTTSDGRF 205 (229)
Q Consensus 155 g~~~I~svev~~~~~~~W~~m~r~--~g~----~W~~~~-~l-~~-~p~~vrvTs~~G~~ 205 (229)
|...|++|||...++.+|++..-. .+. .|++.- .. .+ --+.+|-||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 346799999999888789976532 222 355542 11 23 14666667777754
No 25
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=35.71 E-value=1e+02 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=33.5
Q ss_pred EeeCCCcceEEEEEEcCCcCCcEEcccCC--C-------Ce---EEeCCCC-CC--cceEEEEEecCCeE
Q 048775 151 WNVGGAGDISHVEVKGDNKLNWTPLHKNW--G-------SK---WQTSCSL-EE--ESLTFKVTTSDGRF 205 (229)
Q Consensus 151 ~n~~g~~~I~svev~~~~~~~W~~m~r~~--g-------~~---W~~~~~l-~~--~p~~vrvTs~~G~~ 205 (229)
...+|...|++|||...++.+|+...-.. + -. |.+.-.+ .+ --+.+|-|+..|++
T Consensus 270 A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 270 AWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 44444457999999999887899765532 1 23 4443222 21 14566777777754
No 26
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=35.44 E-value=2.3e+02 Score=24.26 Aligned_cols=88 Identities=16% Similarity=0.283 Sum_probs=43.5
Q ss_pred CcEEechhhhhhhccccCceeeEEEEEeeeecCCceEEEEcCCCCeEEEEEEeeCCCcceEEEEEEcCCcCCcEEcccCC
Q 048775 100 EHFDIAYPAFKHIAEYKAGIVPVAYRRVSCKKQGGIKFTITGTQHWTLVTIWNVGGAGDISHVEVKGDNKLNWTPLHKNW 179 (229)
Q Consensus 100 ~~~DLs~~AF~~ia~~~~G~~~i~wr~V~C~~~g~i~~~~~~~~~w~~v~v~n~~g~~~I~svev~~~~~~~W~~m~r~~ 179 (229)
.+|-++|.+|..-.. .|..-+=...+.+.|.|+.- .++|.|.+..-..+|..-.|....
T Consensus 48 ~~FyV~P~~f~~~tG--------~WY~~~~~~~~~~aF~V~~P--sl~l~v~d~~t~~dvt~~~V~~G~----------- 106 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTG--------NWYQWNGTPKGDVAFYVQDP--SLSLKVWDANTDKDVTGKTVPRGD----------- 106 (209)
T ss_pred cCEEEChHHhCCccc--------ceEecCCCCCcceEEEEeCC--ceEEEEEeccccccccCceeccCC-----------
Confidence 589999999974332 23332222223566666521 155555444322344332222221
Q ss_pred CCeEEeCC----------C-CCCcceEEEEEecCCeEEEe
Q 048775 180 GSKWQTSC----------S-LEEESLTFKVTTSDGRFVIS 208 (229)
Q Consensus 180 g~~W~~~~----------~-l~~~p~~vrvTs~~G~~v~~ 208 (229)
.-.|.++. . ....+++|+|++.+|.+++.
T Consensus 107 ~v~FrI~tNL~~~~~R~g~~~~~~~v~I~V~~P~G~~~t~ 146 (209)
T PF12863_consen 107 NVNFRIDTNLYSIFQRGGYTPGDGPVDIKVTTPSGATYTS 146 (209)
T ss_pred eEEEEEcccHHHHhhcCCCCCCcceEEEEEeCCCCcEEEE
Confidence 12333321 1 11125899999888876554
No 27
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=29.10 E-value=2.2e+02 Score=22.95 Aligned_cols=44 Identities=30% Similarity=0.598 Sum_probs=25.2
Q ss_pred CceeeEEEEEeeeecCCceEEEEc--C--CCCeEEEEEEeeCCCcceEEEEE
Q 048775 117 AGIVPVAYRRVSCKKQGGIKFTIT--G--TQHWTLVTIWNVGGAGDISHVEV 164 (229)
Q Consensus 117 ~G~~~i~wr~V~C~~~g~i~~~~~--~--~~~w~~v~v~n~~g~~~I~svev 164 (229)
-|-++|+-|+-+ ..++..+.+= + +|+|+.|++ +.+| .++.-|.+
T Consensus 57 gGffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~ 104 (144)
T PRK13701 57 GGFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQV 104 (144)
T ss_pred cCeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEe
Confidence 355566655555 2235555553 3 899999998 4554 34444433
No 28
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=28.52 E-value=2.1e+02 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEcccCC-CCeEEeC--CCCCCcceEEEEEecCCeEE
Q 048775 173 TPLHKNW-GSKWQTS--CSLEEESLTFKVTTSDGRFV 206 (229)
Q Consensus 173 ~~m~r~~-g~~W~~~--~~l~~~p~~vrvTs~~G~~v 206 (229)
.+|.+.. ...|... ....+..+.+|++..+|...
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 4677755 5677643 22333468999987555543
No 29
>PRK10301 hypothetical protein; Provisional
Probab=26.17 E-value=98 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.0
Q ss_pred cccCceeeEEEEEeeeec---CCceEEEEc
Q 048775 114 EYKAGIVPVAYRRVSCKK---QGGIKFTIT 140 (229)
Q Consensus 114 ~~~~G~~~i~wr~V~C~~---~g~i~~~~~ 140 (229)
.+..|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999773 568888775
No 30
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=24.94 E-value=1.7e+02 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.4
Q ss_pred ceEEEEc------CCCCeEEEEEEeeCCCcceEEEEEEcC
Q 048775 134 GIKFTIT------GTQHWTLVTIWNVGGAGDISHVEVKGD 167 (229)
Q Consensus 134 ~i~~~~~------~~~~w~~v~v~n~~g~~~I~svev~~~ 167 (229)
.+++.+. .-+||.-+.|.|.+| ...++|+|.+.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 5555554 356999999999987 57899999863
No 31
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.51 E-value=1.1e+02 Score=24.29 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=23.2
Q ss_pred cccCceeeEEEEEeeeec---CCceEEEEc
Q 048775 114 EYKAGIVPVAYRRVSCKK---QGGIKFTIT 140 (229)
Q Consensus 114 ~~~~G~~~i~wr~V~C~~---~g~i~~~~~ 140 (229)
++..|.+-++||.|+=+. .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 468999999999999884 678998886
No 32
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=23.56 E-value=2.7e+02 Score=26.07 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.7
Q ss_pred cceEEEEEEcCCcCCcEEccc
Q 048775 157 GDISHVEVKGDNKLNWTPLHK 177 (229)
Q Consensus 157 ~~I~svev~~~~~~~W~~m~r 177 (229)
..|++|||...++.+|+....
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 379999999998878997754
No 33
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.13 E-value=1.7e+02 Score=20.38 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=27.2
Q ss_pred EEEEEEcCCcCCc--EEcccCCCCeEEeCCCCCCcceEEEEEecCCeEE
Q 048775 160 SHVEVKGDNKLNW--TPLHKNWGSKWQTSCSLEEESLTFKVTTSDGRFV 206 (229)
Q Consensus 160 ~svev~~~~~~~W--~~m~r~~g~~W~~~~~l~~~p~~vrvTs~~G~~v 206 (229)
++|+|.++=. .| .+|+|.....|+..-.+..+.+.+|+. .+|++.
T Consensus 14 ~~V~v~G~fn-~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFN-NWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECC-CCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 6788887633 57 468887656787654444324455554 356655
No 34
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.40 E-value=91 Score=22.81 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=18.4
Q ss_pred ccCceeeEEEEEeeeec---CCceEEEEc
Q 048775 115 YKAGIVPVAYRRVSCKK---QGGIKFTIT 140 (229)
Q Consensus 115 ~~~G~~~i~wr~V~C~~---~g~i~~~~~ 140 (229)
+..|.+.|.||-|+=+- .|.+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 67899999999999552 456777764
No 35
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=20.79 E-value=3.1e+02 Score=22.08 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=22.7
Q ss_pred CceeeEEEEEeeeecCCceEEEEc--C--CCCeEEEEEEeeCCCcceEEEEEE
Q 048775 117 AGIVPVAYRRVSCKKQGGIKFTIT--G--TQHWTLVTIWNVGGAGDISHVEVK 165 (229)
Q Consensus 117 ~G~~~i~wr~V~C~~~g~i~~~~~--~--~~~w~~v~v~n~~g~~~I~svev~ 165 (229)
-|.++|+-|+-+=. +...+.+= | +|+|+.|++.+ +| .++.-|...
T Consensus 57 gGffPVq~Rftp~~--~~~~l~vCSpG~~sp~W~~vl~~~-~G-~~~~vv~t~ 105 (143)
T PF06290_consen 57 GGFFPVQCRFTPSH--ERFHLAVCSPGEVSPYWMLVLVNR-GG-QPFAVVRTQ 105 (143)
T ss_dssp -S-SSSEEEEEETT---SEEEEEE-SSSS-SSEEEEEEEC-CC--SEEEEEEE
T ss_pred ccEeeEEEEecCCC--CcEEEEEcCCCCcCcceEEEEECC-CC-cEEEEEEec
Confidence 35556555554433 34444443 3 89999888754 44 466655554
Done!