BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048777
         (547 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47019|ALB1_YEAST Ribosome biogenesis protein ALB1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=ALB1 PE=1 SV=1
          Length = 175

 Score = 34.7 bits (78), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 352 KNLKKDNSTIIWRQFDAPSPGNFWFMVCDREAAKYIERPWHALLKSKILLNIVAEIGGRM 411
           K  +  NST +  Q  + SP +       ++ AK IER      + K+L++  A++   M
Sbjct: 62  KKNESQNSTAVTLQNASSSPASITTRTLSKKRAKKIERNLKYATQRKLLVDASAKLEDEM 121

Query: 412 DYEYDAIHVVRGERVKN------KKLWPNLDSDTSPGALLE 446
           D + D    V+    K+      + LW  +D   S G ++E
Sbjct: 122 DIDLDGGKKVKENEKKSSLTLVKEALWSVIDDTASQGLIIE 162


>sp|A6ZQK9|ALB1_YEAS7 Ribosome biogenesis protein ALB1 OS=Saccharomyces cerevisiae
           (strain YJM789) GN=ALB1 PE=3 SV=1
          Length = 175

 Score = 34.7 bits (78), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 352 KNLKKDNSTIIWRQFDAPSPGNFWFMVCDREAAKYIERPWHALLKSKILLNIVAEIGGRM 411
           K  +  NST +  Q  + SP +       ++ AK IER      + K+L++  A++   M
Sbjct: 62  KKNESQNSTAVTLQNASSSPASITTRTLSKKRAKKIERNLKYATQRKLLVDASAKLEDEM 121

Query: 412 DYEYDAIHVVRGERVKN------KKLWPNLDSDTSPGALLE 446
           D + D    V+    K+      + LW  +D   S G ++E
Sbjct: 122 DIDLDGGKKVKENEKKSSLTLVKEALWSVIDDTASQGLIIE 162


>sp|Q2U639|ATM_ASPOR Serine/threonine-protein kinase tel1 OS=Aspergillus oryzae (strain
           ATCC 42149 / RIB 40) GN=tel1 PE=3 SV=1
          Length = 2925

 Score = 33.9 bits (76), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 381 REAAKYIERPWHALLKSKILLNIVAEIGGRMDYEY----DAIHV 420
           R A   I + WH L +SK LLN + ++GG +D++     D IH+
Sbjct: 646 RGATSLIAKGWHFLHRSKQLLNYLFQLGGILDFDMWDTDDTIHL 689


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,560,824
Number of Sequences: 539616
Number of extensions: 9297734
Number of successful extensions: 22743
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22742
Number of HSP's gapped (non-prelim): 5
length of query: 547
length of database: 191,569,459
effective HSP length: 123
effective length of query: 424
effective length of database: 125,196,691
effective search space: 53083396984
effective search space used: 53083396984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)