Query 048777
Match_columns 547
No_of_seqs 66 out of 68
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 23:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 7.3E-16 2.5E-20 154.1 11.7 274 241-547 20-398 (408)
2 3zy2_A Putative GDP-fucose pro 98.5 3E-07 1E-11 94.2 9.0 236 255-534 14-333 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 6.5E-06 2.2E-10 87.0 3.6 242 239-535 141-407 (526)
4 2hhc_A NODZ, nodulation fucosy 97.5 9.3E-05 3.2E-09 71.5 5.4 41 241-285 2-42 (330)
5 3u43_A Colicin-E2 immunity pro 33.7 22 0.00076 30.6 2.5 23 431-453 54-76 (94)
6 1fr2_A Colicin E9 immunity pro 31.4 27 0.00092 29.5 2.6 30 419-452 46-75 (86)
7 1gxg_A Colicin E8 immunity pro 31.4 26 0.0009 29.5 2.5 30 419-452 45-74 (85)
8 3gdw_A Sigma-54 interaction do 26.5 99 0.0034 27.2 5.5 54 396-466 16-74 (139)
9 1unk_A Colicin E7; immunity pr 26.2 37 0.0013 28.9 2.6 41 399-452 36-76 (87)
10 3gx1_A LIN1832 protein; APC633 20.9 1.5E+02 0.0052 25.6 5.5 51 397-464 17-70 (130)
11 2w45_A Nuclease, alkaline exon 20.4 42 0.0015 35.8 2.2 47 117-164 240-300 (470)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.63 E-value=7.3e-16 Score=154.14 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=158.1
Q ss_pred ccceeEEEeCC-CCcCCCcchhHHHHHhhccccccccee----eeeecccccccccCCCCCCCCCccceeecchhccccc
Q 048777 241 KEGKYLYYKRG-GDYCKGMNHFAWSFLCGLGEAMYLKRT----FVMDLSMCLAAKYNPSNQDVDGKDFRYYFDFEHLKDV 315 (547)
Q Consensus 241 ~~gKYLyy~~g-Gd~Ckgm~H~~~SllCAL~EA~yLNRT----fVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~~ 315 (547)
++-|||.|--- | .|-|=|-=.|+=++.=|+.|||| ||||--.=+ ..|......+..-.|.-+||+++|++-
T Consensus 20 ~~~rYl~y~~~~g---~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~-~h~~~~~~~~~~ipf~~fFDv~~L~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPP---EGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRL-YHWQSPDIHQVRIPWSEFFDLPSLNKN 95 (408)
T ss_dssp CCCEEEEECCCTT---CCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCS-CGGGSTTSCCCSBCGGGTBCHHHHHTT
T ss_pred cccceEEecCCCC---CcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCccc-ccccCCcccceeccHHHhcCHHHHHhh
Confidence 56899999542 2 45666666666667788999999 999933212 222322222223468899999999999
Q ss_pred cceeechhhhhhhhH--HhHh----h-cccccceEEEEeeeccccccccccceEEec--cCCCCCCCee--------eee
Q 048777 316 ASVVEEGEFLREWKK--WDQK----H-EKKVSVKKVVSYKVKPKNLKKDNSTIIWRQ--FDAPSPGNFW--------FMV 378 (547)
Q Consensus 316 v~VIe~~qF~~dw~~--W~~~----~-~~kL~~r~v~~~~Vtp~~Lk~~~~~li~rk--f~~~ep~nyW--------y~v 378 (547)
+|||+-.||+++... |... . ..+.......+ +.+.+...+...... -+.+. +-+| -..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~----k~~~~~c~~~~~~~~~~~~~~~-gpfw~~~~v~~~~~~ 170 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEE----KVDERPCIDQLLYSQDKHEYYR-GWFWGYEETRGLNVS 170 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCC----CEEEECCSSCCSCEECTTSCEE-CCGGGCTTCEEEEEE
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccc----hhhhhhhhhccccccccccCcc-CCcccccccccCCce
Confidence 999999999987531 2210 0 00000000000 000000000000000 00000 0011 012
Q ss_pred eccccc--cccc-------------------ccc------------hhhhhhHHHHHHHHHHhcc---------------
Q 048777 379 CDREAA--KYIE-------------------RPW------------HALLKSKILLNIVAEIGGR--------------- 410 (547)
Q Consensus 379 Cege~~--s~i~-------------------~P~------------~~l~kskrLm~iv~~I~~r--------------- 410 (547)
|-.--. +.+. .|. ..|..++.|++++++....
T Consensus 171 c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~ 250 (408)
T 4ap5_A 171 CLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQE 250 (408)
T ss_dssp EEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCS
T ss_pred eEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccch
Confidence 211000 0000 011 1123578888888774431
Q ss_pred ------------cCCCCceEEEecCccccccc-cCCCCCCCCChHHHHHHhhhhcC--CCcEEEEeeCCCCCcchhhhhc
Q 048777 411 ------------MDYEYDAIHVVRGERVKNKK-LWPNLDSDTSPGALLEKLEEVVH--PWTNLYIATNEPSYNYFDTLRS 475 (547)
Q Consensus 411 ------------m~~DfDavHVrRGDk~~nk~-l~PnLd~DTspE~i~~~i~~~i~--~GR~LYIATnE~~~~fFdpLk~ 475 (547)
.++.|.++|+||||+++.++ ..| |.+.+++.|++.+. ..+.||||||+.+..+++..+.
T Consensus 251 dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~p------s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~ 324 (408)
T 4ap5_A 251 DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKL 324 (408)
T ss_dssp SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSC------CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHH
T ss_pred hHhhhhcccccccCCCccccccccccchhhhhccCC------CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHh
Confidence 35689999999999987654 233 45677777777665 6688999999988777765555
Q ss_pred ceeEeeccchhHHhccCChhhhhhhhccCCCccccCChhhhhhhHhhhccCceeEeeccc--------------ccc---
Q 048777 476 EYKVHLLDDYRDLWNSTSEWYHWMTRLTRGRPVEFDGYMRAIVDTEVFYRGKIRLETFNN--------------LTK--- 538 (547)
Q Consensus 476 kY~vhfLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf~~--------------lt~--- 538 (547)
...+.+++++.+..+ . .-|||+ .|||++|..||+.||+|..+ +++
T Consensus 325 ~~~~~~~~~~~~~~~----------~-------~~d~~~-a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 325 LPEMVRFEPTWEELE----------L-------YKDGGV-AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp CTTEECCCCCHHHHH----------H-------HHHHHH-HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGT
T ss_pred CCCcEEecCcchhhh----------c-------cCcchh-hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcc
Confidence 566766666665544 1 124454 89999999999999998754 332
Q ss_pred ---cccCccCCC
Q 048777 539 ---DCKDGVGYC 547 (547)
Q Consensus 539 ---DCKdGintC 547 (547)
=|+|+-..|
T Consensus 387 ~~~~c~~~~~~~ 398 (408)
T 4ap5_A 387 YNRFCGDQEKAC 398 (408)
T ss_dssp SCBCCCTTCSSC
T ss_pred ccccCCCCccCC
Confidence 388888777
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.47 E-value=3e-07 Score=94.17 Aligned_cols=236 Identities=17% Similarity=0.231 Sum_probs=137.3
Q ss_pred CCCcc---hhHHHHHhhcccccccceeeeeecccccccccCCCCCCCCCccceeecchhccccccceeechhhhhhh--h
Q 048777 255 CKGMN---HFAWSFLCGLGEAMYLKRTFVMDLSMCLAAKYNPSNQDVDGKDFRYYFDFEHLKDVASVVEEGEFLREW--K 329 (547)
Q Consensus 255 Ckgm~---H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~~v~VIe~~qF~~dw--~ 329 (547)
|--|| -|.--||=+|+=|+-||||||+|-=+ .|.. +. .----|.-||++|.|++---||.-.+|.++- .
T Consensus 14 CPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi----~y~~-~~-~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap~ 87 (362)
T 3zy2_A 14 CPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFI----EFKH-PE-TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMPT 87 (362)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEE----ECSS-SS-CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHHH
T ss_pred CCCcCccccHHHHHHHHHHHHHhhCceEecCccc----cccC-Cc-ccccchhheeecchhhhhceeeeHHHHHHHhccc
Confidence 66664 56778888899999999999998654 3432 21 0012388899999999999999999996642 1
Q ss_pred HHhHhhcccccceEEEEeeec----c------ccccccccce--EEec----------cCCCCCCCee------eeeecc
Q 048777 330 KWDQKHEKKVSVKKVVSYKVK----P------KNLKKDNSTI--IWRQ----------FDAPSPGNFW------FMVCDR 381 (547)
Q Consensus 330 ~W~~~~~~kL~~r~v~~~~Vt----p------~~Lk~~~~~l--i~rk----------f~~~ep~nyW------y~vCeg 381 (547)
-|=. +.|+.-=+... + =..|+- |.. .|.. |+.--.++.+ -..++.
T Consensus 88 ~WP~------~~R~~~C~~~~~~~~~~~~~~~C~~K~G-NPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~ 160 (362)
T 3zy2_A 88 VWPP------EKRKAFCWTPRQAIYDKSAEPGCHSKEG-NPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEK 160 (362)
T ss_dssp HSCG------GGCEEEESSCBC-------CCBCCTTSS-TTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHH
T ss_pred cCCc------ccceEeeccccccccCCCCCCCCCCCCC-CCCCcchhccccccccceeccCccccccccchhHHHHHHHh
Confidence 2211 11211111000 0 000110 000 0111 1110000111 001110
Q ss_pred cc--c-ccc-----------cccc----hhhhhhHHHHHHHHH-HhcccCCCCceEEEecC-ccccccc---c--CCCCC
Q 048777 382 EA--A-KYI-----------ERPW----HALLKSKILLNIVAE-IGGRMDYEYDAIHVVRG-ERVKNKK---L--WPNLD 436 (547)
Q Consensus 382 e~--~-s~i-----------~~P~----~~l~kskrLm~iv~~-I~~rm~~DfDavHVrRG-Dk~~nk~---l--~PnLd 436 (547)
=. + .|+ +.=+ ..|.+|+.+++.+++ |..-|+..|=+||.||| |+..--. - -|||=
T Consensus 161 ~p~~~~pVlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~lf 240 (362)
T 3zy2_A 161 FPSEEYPVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPLF 240 (362)
T ss_dssp SCTTTCSEEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHHTCCTTTCCCCT
T ss_pred CCcccCceEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHhhhccccCcccc
Confidence 00 0 122 1112 234489999999999 66669999999999999 7742111 1 24442
Q ss_pred C-----------C--------CChHHHHHHhhhhcC--CCcEEEEeeCCCCCcchhhhhcce-----eEeeccchhHHhc
Q 048777 437 S-----------D--------TSPGALLEKLEEVVH--PWTNLYIATNEPSYNYFDTLRSEY-----KVHLLDDYRDLWN 490 (547)
Q Consensus 437 ~-----------D--------TspE~i~~~i~~~i~--~GR~LYIATnE~~~~fFdpLk~kY-----~vhfLdDFk~Lw~ 490 (547)
. + -|.++|++.|++++. .=+.||||||... +.+.|++.+ +|+-++
T Consensus 241 aSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~--~~~ELk~~L~~~~v~vv~~~------- 311 (362)
T 3zy2_A 241 ASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH--MIDEINEALKPYEIEAHRQE------- 311 (362)
T ss_dssp TTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC--CHHHHHHHHGGGTCCEECCS-------
T ss_pred cCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH--HHHHHHHHhhccCceEEEeC-------
Confidence 1 1 156889999988877 6799999999754 677766532 122211
Q ss_pred cCChhhhhhhhccCCCccccCChhhhhhhHhhhccCceeEeecc
Q 048777 491 STSEWYHWMTRLTRGRPVEFDGYMRAIVDTEVFYRGKIRLETFN 534 (547)
Q Consensus 491 ~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf~ 534 (547)
| . -.+||+.|..++..||+|-.
T Consensus 312 ----------------p-----e-~a~ID~~I~~~A~~FIGN~~ 333 (362)
T 3zy2_A 312 ----------------P-----D-DMYTSLAIMGRADLFVGNCV 333 (362)
T ss_dssp ----------------S-----C-CHHHHHHHHHHSSEEEECTT
T ss_pred ----------------C-----c-hhHHHHHHHHhCCEeecCcc
Confidence 1 1 36999999999999999854
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.84 E-value=6.5e-06 Score=87.05 Aligned_cols=242 Identities=18% Similarity=0.271 Sum_probs=121.7
Q ss_pred ccccceeEEEeCCCCcCCCcchhHHHHHhhcccccccceeeeeecccccccccCCCCCCCCCccceeecchhccccc-cc
Q 048777 239 DFKEGKYLYYKRGGDYCKGMNHFAWSFLCGLGEAMYLKRTFVMDLSMCLAAKYNPSNQDVDGKDFRYYFDFEHLKDV-AS 317 (547)
Q Consensus 239 ~f~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~yn~~g~~eegkd~r~yfD~ehl~~~-v~ 317 (547)
..+..|||.+.-+ ..-|||=++..++.+|-=|..+|||||+|.+-|. |..+ | +.-||.- +++. .+
T Consensus 141 ~Cs~aK~Lv~~~~--~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~---Y~~g-----~--w~~yF~P--~s~~C~~ 206 (526)
T 2de0_X 141 DCSKAKKLVCNIN--KGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWR---YATG-----G--WETVFRP--VSETCTD 206 (526)
T ss_dssp CGGGSCEEEEECC--CSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCS---SCTT-----C--GGGTBCC--SCSSCCC
T ss_pred cCCCCCEEEEEec--CCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCC---cCCC-----C--HHHhhhC--cCccccC
Confidence 5566799998653 2347777899999999999999999999998875 4322 1 3555554 3322 11
Q ss_pred ee-echhhhhhhhHHhHhhcccccceEEEEeeeccccccccccce--EEecc---------CCCCCCCeeeeeecccccc
Q 048777 318 VV-EEGEFLREWKKWDQKHEKKVSVKKVVSYKVKPKNLKKDNSTI--IWRQF---------DAPSPGNFWFMVCDREAAK 385 (547)
Q Consensus 318 VI-e~~qF~~dw~~W~~~~~~kL~~r~v~~~~Vtp~~Lk~~~~~l--i~rkf---------~~~ep~nyWy~vCege~~s 385 (547)
-. .+. ..|... ..-....|.+..+-. .|.....-+ -+.+. ++| ..|++-. .-+
T Consensus 207 ~~~~~~------~~w~~~--~~~~~~~vV~~~~i~-~~~~~~~~~~~~~P~~~~~~L~~l~~dp---~~w~~~q---~~~ 271 (526)
T 2de0_X 207 RSGIST------GHWSGE--VKDKNVQVVELPIVD-SLHPRPPYLPLAVPEDLADRLVRVHGDP---AVWWVSQ---FVK 271 (526)
T ss_dssp CCCSCC------CBCCCT--TGGGGCSEEEECCGG-GCSSCCSCCTTCEEGGGHHHHHHHCSCH---HHHHHHH---HHH
T ss_pred CCcccc------CCCCCc--ccCCCcceEEeeccc-cccccccccccccchhHHHHHHhccCCc---HHHHHHH---HHH
Confidence 00 011 112211 000011122211100 011000000 01111 122 3444322 224
Q ss_pred cccccchhhhhhHHHHHHHHHHhccc--CCCCceEEEecCcccc-ccccCCCCCCCCChHHHHHHhhhhc--------CC
Q 048777 386 YIERPWHALLKSKILLNIVAEIGGRM--DYEYDAIHVVRGERVK-NKKLWPNLDSDTSPGALLEKLEEVV--------HP 454 (547)
Q Consensus 386 ~i~~P~~~l~kskrLm~iv~~I~~rm--~~DfDavHVrRGDk~~-nk~l~PnLd~DTspE~i~~~i~~~i--------~~ 454 (547)
++++|- +.+.+.+++...++ +.-.=+|||||||+.. ....+| .++.++.+++++ +.
T Consensus 272 yl~rP~------~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~-------~~~Y~~~v~~~~~~l~~~~~~~ 338 (526)
T 2de0_X 272 YLIRPQ------PWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHP-------IEEYMVHVEEHFQLLARRMQVD 338 (526)
T ss_dssp HHTCBC------HHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCS-------HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHcCCC------HHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCC-------HHHHHHHHHHHHHHHHhhcCCC
Confidence 444444 44455555555543 5567799999999953 222332 344444444333 57
Q ss_pred CcEEEEeeCCCCCcchhhhhccee-EeeccchhHHhccCChhhhhhhhccCCCccccCChhhhhhhHhhhccCceeEeec
Q 048777 455 WTNLYIATNEPSYNYFDTLRSEYK-VHLLDDYRDLWNSTSEWYHWMTRLTRGRPVEFDGYMRAIVDTEVFYRGKIRLETF 533 (547)
Q Consensus 455 GR~LYIATnE~~~~fFdpLk~kY~-vhfLdDFk~Lw~~~sewy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf 533 (547)
.+.+|||||.+ ..++.++++|. ..+..|-+--|.. ...++.+ .++-...++|-.++++...+|.|+
T Consensus 339 ~~~ifLATDDp--~v~~e~k~~~p~~~~~~d~~~~~~a-----~~~~R~s------~~~l~~~l~DL~lLs~cd~~Vgt~ 405 (526)
T 2de0_X 339 KKRVYLATDDP--SLLKEAKTKYPNYEFISDNSISWSA-----GLHNRYT------ENSLRGVILDIHFLSQADFLVCTF 405 (526)
T ss_dssp SCEEEEEESCH--HHHHHHHHHCTTSEEECCCCSSCSS-----GGGGGTC------CTHHHHHHHHHHHHHHSSEEEECT
T ss_pred CCeEEEEcCCH--HHHHHHHHhCCCCEEecCccccccc-----Ccccccc------HHHHHHHHHHHHHHhcCCeeecCC
Confidence 89999999965 45888876553 1111211100100 0011111 112234689999999999999998
Q ss_pred cc
Q 048777 534 NN 535 (547)
Q Consensus 534 ~~ 535 (547)
.+
T Consensus 406 sS 407 (526)
T 2de0_X 406 SS 407 (526)
T ss_dssp TS
T ss_pred CC
Confidence 74
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.48 E-value=9.3e-05 Score=71.53 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=36.5
Q ss_pred ccceeEEEeCCCCcCCCcchhHHHHHhhcccccccceeeeeeccc
Q 048777 241 KEGKYLYYKRGGDYCKGMNHFAWSFLCGLGEAMYLKRTFVMDLSM 285 (547)
Q Consensus 241 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~m 285 (547)
++.||++|...| |||-||..+..|+.-|+-.||++++|...
T Consensus 2 ~~~r~iv~~~~g----GLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 2 TKERFVISRRRT----GFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCCEEEEECCS----CHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 468999997544 89999999999999999999999999775
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=33.67 E-value=22 Score=30.57 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.0
Q ss_pred cCCCCCCCCChHHHHHHhhhhcC
Q 048777 431 LWPNLDSDTSPGALLEKLEEVVH 453 (547)
Q Consensus 431 l~PnLd~DTspE~i~~~i~~~i~ 453 (547)
-||+=++|.|||.|++.|++|=.
T Consensus 54 fyP~~~~e~SPEgIv~~IKeWRa 76 (94)
T 3u43_A 54 YYPRDDREDSPEGIVKEIKEWRA 76 (94)
T ss_dssp HSCCTTSCSSHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCHHHHHHHHHHHHH
Confidence 57888899999999999999843
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=31.42 E-value=27 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=23.5
Q ss_pred EEecCccccccccCCCCCCCCChHHHHHHhhhhc
Q 048777 419 HVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVV 452 (547)
Q Consensus 419 HVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i 452 (547)
|-...|.+ -||+=++|.|||.|++.+++|=
T Consensus 46 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 75 (86)
T 1fr2_A 46 HPSGSDLI----YYPKEGDDDSPSGIVNTVKQWR 75 (86)
T ss_dssp CTTTTHHH----HSCCTTCCCSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 33445555 4888899999999999999884
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=31.39 E-value=26 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=23.4
Q ss_pred EEecCccccccccCCCCCCCCChHHHHHHhhhhc
Q 048777 419 HVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVV 452 (547)
Q Consensus 419 HVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i 452 (547)
|-...|.+ -||+=++|.|||.|++.+++|=
T Consensus 45 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 74 (85)
T 1gxg_A 45 HPSGSDLI----YYPEGNNDGSPEAVIKEIKEWR 74 (85)
T ss_dssp CTTTTHHH----HSCCTTCCSSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 33445555 4888889999999999999874
No 8
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.47 E-value=99 Score=27.22 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhcCC-----CcEEEEeeCCCC
Q 048777 396 KSKILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVVHP-----WTNLYIATNEPS 466 (547)
Q Consensus 396 kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i~~-----GR~LYIATnE~~ 466 (547)
-|..|.+.|+.|.+. . .+.++-+. .|.+||++++++++.|.. |.-|.|-||=-.
T Consensus 16 ~A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGS 74 (139)
T 3gdw_A 16 TASSMLKTAQELLGT-S-IGTAMNMP---------------LTMEVQTMYEQLRNQVITQKESLNNGILLLTDMGS 74 (139)
T ss_dssp HHHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSGG
T ss_pred HHHHHHHHHHHHcCc-c-cEEEEEcc---------------CCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 377899999999987 3 67776443 347799999999888744 778999999733
No 9
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=26.22 E-value=37 Score=28.91 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhc
Q 048777 399 ILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVV 452 (547)
Q Consensus 399 rLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i 452 (547)
.|++-..+|.. |-...|++ -||.=++|-|||.|++.|++|=
T Consensus 36 ~lv~hF~~ite---------HP~gsDLI----fYP~~~~edsPEgIv~~iKeWR 76 (87)
T 1unk_A 36 VLLEHFVKITE---------HPDGTDLI----YYPSDNRDDSPEGIVKEIKEWR 76 (87)
T ss_dssp HHHHHHHHHHC---------CTTTTHHH----HSCCSSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------CCCCCCee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 35555555544 55566665 4677789999999999999984
No 10
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=20.90 E-value=1.5e+02 Score=25.63 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhcC---CCcEEEEeeCC
Q 048777 397 SKILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVVH---PWTNLYIATNE 464 (547)
Q Consensus 397 skrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i~---~GR~LYIATnE 464 (547)
|..|.+.++.|.+. . .+.++-+- .|.+||++.+++++.|. .|.-|-|-||=
T Consensus 17 A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 17 ATSMVETVQELLSI-E-SGIALDMP---------------LTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp HHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred HHHHHHHHHHHcCc-c-CEEEEEec---------------CCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 67899999999987 4 67777443 34779999999888765 47788898887
No 11
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=20.42 E-value=42 Score=35.78 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=36.7
Q ss_pred Ch---HHHHHHHHHhhhcC---------cceeeeeeccccCCCCC--CccccccccccCCcc
Q 048777 117 DP---RVLLAVERFNLKQF---------KSVLFLEYLTPVNGSKA--NECDVAWRFRSKRDK 164 (547)
Q Consensus 117 Dp---~v~~~~~r~~~~~F---------~~i~f~~~g~PV~g~~~--~~CD~aWRfR~~~~~ 164 (547)
|| -+..++.+-..+.| |.|.|..=|+ +|+..+ -+||-+|+.+|++.+
T Consensus 240 dpl~~~y~~Ll~~p~~~~~~~Fi~si~~P~VEy~~~g~-~Ps~~e~LlT~d~~w~~~~~k~~ 300 (470)
T 2w45_A 240 DPIYPSYTALYKRPCKRSFIRFINSIARPTVEYVPDGR-LPSEGDYLLTQDEAWNLKDVRKR 300 (470)
T ss_dssp CSSHHHHHHHHHSCSHHHHHHHHTTSSSCSEEECCTTB-CCCSSCSEEECCGGGCCSCCCCB
T ss_pred ChhHHHHHHHHhCCCHHHHHHHHHhCCCCceeeeCCCC-CCChhhhhhhcChhhccCCcccc
Confidence 88 77778776555543 9999998887 778777 789999999997643
Done!