Query 048777
Match_columns 547
No_of_seqs 66 out of 68
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 23:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzha1 c.66.1.53 (A:8-211) tR 56.9 3.3 0.00024 36.1 3.3 64 442-508 126-197 (204)
2 d2fcaa1 c.66.1.53 (A:10-213) t 27.6 16 0.0012 31.4 2.9 63 442-508 124-195 (204)
3 d1pdoa_ c.54.1.1 (A:) IIA doma 24.7 48 0.0035 26.3 5.2 57 396-468 12-71 (129)
4 d1a8ya1 c.47.1.3 (A:3-126) Cal 20.8 15 0.0011 28.5 1.1 33 110-145 70-103 (124)
5 d1gxha_ a.28.2.1 (A:) ImmE8 (I 20.7 25 0.0018 28.0 2.4 31 419-453 45-75 (85)
6 d2vlqa1 a.28.2.1 (A:4-84) ImmE 18.8 31 0.0022 27.2 2.6 42 399-453 32-73 (81)
7 d1ayia_ a.28.2.1 (A:) ImmE7 pr 18.5 31 0.0022 27.5 2.5 42 399-453 36-77 (86)
8 d2b5ea4 c.47.1.2 (A:23-141) Pr 17.2 25 0.0018 26.9 1.7 34 109-144 62-95 (119)
9 d1p3da2 c.59.1.1 (A:322-473) U 15.9 30 0.0022 26.5 1.9 38 440-477 115-152 (152)
10 d1nw2a_ c.47.1.1 (A:) Thioredo 14.2 33 0.0024 25.4 1.6 32 110-144 52-84 (105)
No 1
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=56.88 E-value=3.3 Score=36.13 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=38.5
Q ss_pred HHHHHHhhhhcCCCcEEEEeeCCCCCcchhhhh----c-cee--EeeccchhHHhccC-ChhhhhhhhccCCCcc
Q 048777 442 GALLEKLEEVVHPWTNLYIATNEPSYNYFDTLR----S-EYK--VHLLDDYRDLWNST-SEWYHWMTRLTRGRPV 508 (547)
Q Consensus 442 E~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk----~-kY~--vhfLdDFk~Lw~~~-sewy~Et~~Ln~G~PV 508 (547)
.++++.+...+.||..||||||-.+ ||+-.. . .+. ....+.+..-+... ..+| |.+-+..|+||
T Consensus 126 ~~~l~~~~~~LkpgG~l~i~TD~~~--Y~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~T~y-E~k~~~~G~~I 197 (204)
T d1yzha1 126 KTFLDTFKRILPENGEIHFKTDNRG--LFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEY-EQKFSNKGQVI 197 (204)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHH-HHHTGGGCCCC
T ss_pred HHHHHHHHHhCCCCcEEEEEECCcc--HHHHHHHHHHHCCcccccccccccccccCCCCCCHH-HHHHHHcCCCe
Confidence 6889999999999999999998544 443221 1 111 22333333222211 1234 66778888887
No 2
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=27.63 E-value=16 Score=31.44 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=37.6
Q ss_pred HHHHHHhhhhcCCCcEEEEeeCCCCCcchhhhhccee-----Eee--ccchhHHhcc--CChhhhhhhhccCCCcc
Q 048777 442 GALLEKLEEVVHPWTNLYIATNEPSYNYFDTLRSEYK-----VHL--LDDYRDLWNS--TSEWYHWMTRLTRGRPV 508 (547)
Q Consensus 442 E~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk~kY~-----vhf--LdDFk~Lw~~--~sewy~Et~~Ln~G~PV 508 (547)
.++++.+...+.||..|+||||-.. |++-..+.+. ..+ .|.+..-+.. .|++ |.+-+..|+||
T Consensus 124 ~~~l~~~~r~LkpgG~l~i~TD~~~--y~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~T~y--E~k~~~~G~~i 195 (204)
T d2fcaa1 124 SHFLKKYEEVMGKGGSIHFKTDNRG--LFEYSLKSFSEYGLLLTYVSLDLHNSNLEGNIMTEY--EEKFSALGQPI 195 (204)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEESSGGGSSCTTCCCCTT--GGGSSSSSCCC
T ss_pred HHHHHHHHHhCCCCcEEEEEECChH--HHHHHHHHHHHCCCccccCChhhcccCCCCCCCCHH--HHHHHHcCCCe
Confidence 4789999999999999999998654 3443332221 111 2223322221 1222 66777888887
No 3
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=24.70 E-value=48 Score=26.30 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhc---CCCcEEEEeeCCCCCc
Q 048777 396 KSKILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVV---HPWTNLYIATNEPSYN 468 (547)
Q Consensus 396 kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i---~~GR~LYIATnE~~~~ 468 (547)
-|+-|.+.|+-|.+..+ ++.++.. ..|.+++++.+++++.+ .++..+.|-||=..-+
T Consensus 12 ~A~gl~~s~~~i~G~~~-~i~~i~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GGs 71 (129)
T d1pdoa_ 12 AAEQLLKTAEMLLGEQE-NVGWIDF---------------VPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGS 71 (129)
T ss_dssp HHHHHHHHHHHHHCCCS-SEEEECB---------------CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSH
T ss_pred HHHHHHHHHHHHhCCCC-CeEEEEc---------------cCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeccccc
Confidence 47789999999998644 4444443 34567999999988777 4677899999964443
No 4
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.77 E-value=15 Score=28.53 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=26.7
Q ss_pred CccccCC-ChHHHHHHHHHhhhcCcceeeeeeccccC
Q 048777 110 LREVNCS-DPRVLLAVERFNLKQFKSVLFLEYLTPVN 145 (547)
Q Consensus 110 ~~p~~Cs-Dp~v~~~~~r~~~~~F~~i~f~~~g~PV~ 145 (547)
-+.|||. +++ +.++++|+.||.|.||.=|.|+.
T Consensus 70 ~a~Vd~~~~~~---l~~~~~I~~yPTi~~f~~g~~~~ 103 (124)
T d1a8ya1 70 FGLVDSEKDAA---VAKKLGLTEEDSIYVFKEDEVIE 103 (124)
T ss_dssp EEEEETTTSHH---HHHTTTCCSTTCEEEEESSSEEE
T ss_pred EEEEEeecccc---hhhccccccCCcEEEeccCccEE
Confidence 4678888 444 57999999999999998877763
No 5
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=20.71 E-value=25 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=24.9
Q ss_pred EEecCccccccccCCCCCCCCChHHHHHHhhhhcC
Q 048777 419 HVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVVH 453 (547)
Q Consensus 419 HVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i~ 453 (547)
|-...|+++ +|.=++|.|||-|++.|++|=.
T Consensus 45 HP~gsDLIf----YP~~~~edsPegIv~~IKeWRa 75 (85)
T d1gxha_ 45 HPSGSDLIY----YPEGNNDGSPEAVIKEIKEWRA 75 (85)
T ss_dssp CTTTTHHHH----SCCSSCSSCTHHHHHHHHHHHH
T ss_pred CCCCCceee----eCCCCCCCCHHHHHHHHHHHHH
Confidence 666677764 5777999999999999999843
No 6
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=18.82 E-value=31 Score=27.21 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhcC
Q 048777 399 ILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVVH 453 (547)
Q Consensus 399 rLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i~ 453 (547)
.|++-..+|.+ |-...|.++ +|.=++|-|||-|++.|++|=.
T Consensus 32 ~l~~hF~~ite---------HP~gsDLIf----YP~~~~edsPegIv~~IK~WRa 73 (81)
T d2vlqa1 32 KLVTHFEEMTE---------HPSGSDLIY----YPKEGDDDSPSGIVNTVKQWRA 73 (81)
T ss_dssp HHHHHHHHHHC---------CTTTTHHHH----SCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc---------CCCCCceee----eCCCCCcCCHHHHHHHHHHHHH
Confidence 35555555555 556677764 5777999999999999999843
No 7
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=18.46 E-value=31 Score=27.49 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcccCCCCceEEEecCccccccccCCCCCCCCChHHHHHHhhhhcC
Q 048777 399 ILLNIVAEIGGRMDYEYDAIHVVRGERVKNKKLWPNLDSDTSPGALLEKLEEVVH 453 (547)
Q Consensus 399 rLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~PnLd~DTspE~i~~~i~~~i~ 453 (547)
.|++-..+|.+ |-..+|.++ +|.=++|-|||-|++.|++|=.
T Consensus 36 ~l~~hF~~ite---------HP~gsDLIy----YP~~~~edsPegI~k~IKeWRa 77 (86)
T d1ayia_ 36 VLLEHFVKITE---------HPDGTDLIY----YPSDNRDDSPEGIVKEIKEWRA 77 (86)
T ss_dssp HHHHHHHHHHC---------CTTTTHHHH----SCCTTSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---------CCCCCceee----eCCCCCCCCHHHHHHHHHHHHH
Confidence 44444555554 666777774 5777999999999999999843
No 8
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.19 E-value=25 Score=26.87 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCccccCCChHHHHHHHHHhhhcCcceeeeeecccc
Q 048777 109 ELREVNCSDPRVLLAVERFNLKQFKSVLFLEYLTPV 144 (547)
Q Consensus 109 ~~~p~~CsDp~v~~~~~r~~~~~F~~i~f~~~g~PV 144 (547)
.-+-|||.+-. .+..+++++.+|.|.||+=|..+
T Consensus 62 ~~~~vd~~~~~--~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 62 TLAQIDCTENQ--DLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp EEEEEETTTCH--HHHHHTTCCSSSEEEEEETTCTT
T ss_pred eeeeeeccchH--HHHHHhccccCCeEEEEECCEEe
Confidence 34568888543 56889999999999999866554
No 9
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=15.90 E-value=30 Score=26.53 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=31.4
Q ss_pred ChHHHHHHhhhhcCCCcEEEEeeCCCCCcchhhhhcce
Q 048777 440 SPGALLEKLEEVVHPWTNLYIATNEPSYNYFDTLRSEY 477 (547)
Q Consensus 440 spE~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk~kY 477 (547)
..+++.+.+.+.+++|..|-|++++.-..+-..|.++|
T Consensus 115 ~~~~~i~~~~~~~~~gDiil~mGaGdi~~i~~~l~e~~ 152 (152)
T d1p3da2 115 DTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW 152 (152)
T ss_dssp CGGGHHHHHHHHCCTTCEEEEECSSTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHhcC
Confidence 47789999999999999999999997666666666654
No 10
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}
Probab=14.19 E-value=33 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=25.7
Q ss_pred CccccCC-ChHHHHHHHHHhhhcCcceeeeeecccc
Q 048777 110 LREVNCS-DPRVLLAVERFNLKQFKSVLFLEYLTPV 144 (547)
Q Consensus 110 ~~p~~Cs-Dp~v~~~~~r~~~~~F~~i~f~~~g~PV 144 (547)
-.-+||. +|++ ..++++...|.+.+|+=|+++
T Consensus 52 ~~~vd~~~~~~~---~~~~~V~~~Pt~~~~~~G~~~ 84 (105)
T d1nw2a_ 52 VAKLNVDENPET---TSQFGIMSIPTLILFKGGEPV 84 (105)
T ss_dssp EEEEETTTCHHH---HHHTTCCBSSEEEEEETTEEE
T ss_pred EEEEECCCCccc---HHHCCcceeeEEEEEECCEEE
Confidence 4567777 4443 689999999999999999876
Done!