Query 048778
Match_columns 902
No_of_seqs 816 out of 4852
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 13:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.2E-85 7E-90 779.3 74.9 676 160-901 49-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.7E-85 8E-90 778.8 74.5 744 76-895 58-836 (857)
3 PLN03218 maturation of RBCL 1; 100.0 4.7E-71 1E-75 640.6 70.5 523 160-689 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 2.3E-70 4.9E-75 634.8 72.3 549 192-798 365-917 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.1E-65 6.7E-70 593.2 53.1 513 160-689 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 3.4E-64 7.3E-69 584.5 52.8 513 265-831 84-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-42 9.4E-47 421.7 99.6 783 79-893 100-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-41 3.8E-46 416.3 96.3 822 43-897 24-869 (899)
9 PRK11447 cellulose synthase su 100.0 7.1E-28 1.5E-32 294.2 77.2 661 166-893 32-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-27 3.1E-32 291.4 77.8 641 143-858 44-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.9E-24 4E-29 250.8 74.5 607 174-858 56-739 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.5E-22 3.2E-27 235.1 74.7 608 209-895 56-741 (987)
13 KOG2002 TPR-containing nuclear 100.0 5.2E-22 1.1E-26 213.8 68.1 694 162-897 41-801 (1018)
14 KOG2002 TPR-containing nuclear 99.9 1.1E-20 2.4E-25 203.6 63.3 640 197-895 41-746 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 4.6E-23 1E-27 210.0 39.4 441 378-875 53-500 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 5.8E-22 1.3E-26 202.1 38.8 459 341-857 51-524 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.8E-18 4E-23 198.7 54.4 256 561-861 307-573 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-18 4.5E-23 198.2 52.4 255 595-895 306-572 (615)
19 PRK11788 tetratricopeptide rep 99.9 6.7E-20 1.5E-24 200.2 37.7 301 556-901 43-354 (389)
20 PRK15174 Vi polysaccharide exp 99.9 7.1E-18 1.5E-22 192.7 46.8 331 411-789 45-380 (656)
21 PRK11788 tetratricopeptide rep 99.9 5.9E-19 1.3E-23 192.8 35.6 302 169-513 42-353 (389)
22 KOG2076 RNA polymerase III tra 99.9 9.8E-15 2.1E-19 157.4 63.7 625 143-823 155-848 (895)
23 KOG2076 RNA polymerase III tra 99.9 6.1E-15 1.3E-19 159.0 60.9 633 211-890 153-891 (895)
24 KOG0495 HAT repeat protein [RN 99.9 5.7E-14 1.2E-18 145.4 64.8 603 211-891 265-877 (913)
25 PRK15174 Vi polysaccharide exp 99.8 6.2E-17 1.4E-21 185.0 48.4 382 348-790 15-403 (656)
26 PRK10049 pgaA outer membrane p 99.8 1.8E-16 3.9E-21 185.4 49.6 424 337-836 14-466 (765)
27 PRK10049 pgaA outer membrane p 99.8 2E-16 4.2E-21 185.1 49.6 429 302-805 14-470 (765)
28 KOG0495 HAT repeat protein [RN 99.8 2.5E-13 5.4E-18 140.7 64.5 463 347-864 415-885 (913)
29 KOG4422 Uncharacterized conser 99.8 1.6E-15 3.6E-20 148.9 42.4 342 162-525 116-480 (625)
30 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.8E-19 165.8 55.7 339 278-646 44-395 (822)
31 PRK14574 hmsH outer membrane p 99.8 8.5E-15 1.8E-19 167.3 54.2 465 313-836 44-523 (822)
32 KOG4318 Bicoid mRNA stability 99.8 5.7E-14 1.2E-18 150.5 45.8 694 148-886 11-864 (1088)
33 KOG4422 Uncharacterized conser 99.8 1.3E-13 2.8E-18 135.7 42.2 445 198-682 117-590 (625)
34 KOG2003 TPR repeat-containing 99.7 2.3E-14 5E-19 141.6 35.5 278 522-845 428-709 (840)
35 KOG2003 TPR repeat-containing 99.7 1.8E-14 4E-19 142.3 31.9 453 379-893 207-688 (840)
36 KOG4318 Bicoid mRNA stability 99.7 4.1E-13 8.9E-18 144.1 42.6 672 184-895 12-809 (1088)
37 KOG1915 Cell cycle control pro 99.7 2.4E-10 5.2E-15 114.6 53.5 441 208-697 84-549 (677)
38 KOG1915 Cell cycle control pro 99.7 2E-10 4.2E-15 115.2 51.8 455 351-859 86-585 (677)
39 KOG1155 Anaphase-promoting com 99.6 7.4E-11 1.6E-15 118.2 46.0 290 522-857 236-534 (559)
40 KOG1155 Anaphase-promoting com 99.6 2.4E-12 5.1E-17 128.7 35.4 291 555-894 234-536 (559)
41 KOG0547 Translocase of outer m 99.6 1.3E-12 2.8E-17 131.2 33.4 222 593-861 336-568 (606)
42 KOG0547 Translocase of outer m 99.6 1.5E-12 3.2E-17 130.9 33.4 220 629-893 337-565 (606)
43 KOG1126 DNA-binding cell divis 99.6 7.3E-14 1.6E-18 146.3 24.1 286 528-865 334-626 (638)
44 PF13429 TPR_15: Tetratricopep 99.6 2.9E-15 6.2E-20 154.5 12.8 256 590-892 15-275 (280)
45 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 140.9 34.4 288 525-857 96-397 (409)
46 KOG1173 Anaphase-promoting com 99.6 4E-11 8.6E-16 123.3 41.5 283 545-873 241-530 (611)
47 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 143.1 25.3 285 563-898 334-624 (638)
48 PF13429 TPR_15: Tetratricopep 99.6 8.4E-15 1.8E-19 151.0 14.3 261 553-858 13-276 (280)
49 PRK10747 putative protoheme IX 99.6 4.4E-12 9.5E-17 136.8 34.8 284 561-894 97-390 (398)
50 TIGR00540 hemY_coli hemY prote 99.6 6.5E-12 1.4E-16 136.4 35.7 286 559-892 95-397 (409)
51 KOG2047 mRNA splicing factor [ 99.6 3.7E-08 8E-13 103.1 63.7 566 233-888 103-717 (835)
52 KOG4162 Predicted calmodulin-b 99.6 3.9E-09 8.5E-14 113.0 53.1 486 351-860 240-784 (799)
53 PRK10747 putative protoheme IX 99.6 8.3E-12 1.8E-16 134.6 34.3 282 526-859 97-390 (398)
54 COG2956 Predicted N-acetylgluc 99.6 1.3E-11 2.8E-16 117.9 30.3 290 561-900 48-353 (389)
55 KOG1173 Anaphase-promoting com 99.6 1.5E-10 3.3E-15 119.1 39.3 503 200-803 19-530 (611)
56 KOG3785 Uncharacterized conser 99.5 1.5E-09 3.3E-14 104.9 41.4 502 312-894 31-549 (557)
57 KOG2047 mRNA splicing factor [ 99.5 1.8E-07 3.8E-12 98.2 60.6 92 164-259 104-196 (835)
58 KOG0985 Vesicle coat protein c 99.5 4.5E-07 9.8E-12 99.5 63.0 343 498-893 967-1340(1666)
59 KOG1156 N-terminal acetyltrans 99.5 4.6E-09 1E-13 110.2 42.7 426 385-825 19-469 (700)
60 KOG4162 Predicted calmodulin-b 99.5 1.5E-08 3.2E-13 108.7 47.1 440 327-823 312-782 (799)
61 KOG3785 Uncharacterized conser 99.5 2.2E-09 4.8E-14 103.7 36.2 451 206-691 31-497 (557)
62 COG3071 HemY Uncharacterized e 99.4 7.9E-10 1.7E-14 109.5 33.7 284 491-822 97-388 (400)
63 KOG1156 N-terminal acetyltrans 99.4 1.2E-07 2.6E-12 99.8 50.5 600 246-895 21-689 (700)
64 COG2956 Predicted N-acetylgluc 99.4 5.9E-10 1.3E-14 106.7 30.7 289 281-576 48-346 (389)
65 KOG0985 Vesicle coat protein c 99.4 9.1E-07 2E-11 97.3 64.3 304 525-890 1060-1366(1666)
66 COG3071 HemY Uncharacterized e 99.4 1.5E-09 3.3E-14 107.5 32.7 285 526-860 97-391 (400)
67 KOG1127 TPR repeat-containing 99.4 4.2E-07 9.2E-12 100.1 53.4 663 103-836 472-1186(1238)
68 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.7E-15 116.2 26.0 200 653-894 31-232 (234)
69 KOG1174 Anaphase-promoting com 99.4 1.5E-08 3.3E-13 100.3 37.4 294 489-830 207-504 (564)
70 PRK12370 invasion protein regu 99.3 9.6E-10 2.1E-14 124.2 31.5 210 564-822 277-500 (553)
71 KOG3616 Selective LIM binding 99.3 9.7E-07 2.1E-11 93.7 50.5 168 204-397 739-906 (1636)
72 KOG2376 Signal recognition par 99.3 1.3E-07 2.8E-12 98.5 43.1 151 598-787 356-517 (652)
73 PRK12370 invasion protein regu 99.3 7.3E-10 1.6E-14 125.2 29.2 248 598-896 276-537 (553)
74 TIGR02521 type_IV_pilW type IV 99.3 8.6E-10 1.9E-14 111.0 26.6 196 583-821 31-229 (234)
75 KOG3617 WD40 and TPR repeat-co 99.3 1.7E-07 3.7E-12 100.5 43.6 423 161-671 725-1189(1416)
76 KOG1127 TPR repeat-containing 99.3 3.9E-07 8.4E-12 100.4 46.9 576 213-859 474-1104(1238)
77 KOG1840 Kinesin light chain [C 99.3 3E-09 6.6E-14 113.7 29.8 236 583-857 199-477 (508)
78 KOG3616 Selective LIM binding 99.3 3.2E-06 7E-11 89.8 50.7 384 177-640 546-930 (1636)
79 PF13041 PPR_2: PPR repeat fam 99.3 6.7E-12 1.5E-16 89.6 6.3 50 266-315 1-50 (50)
80 KOG1129 TPR repeat-containing 99.3 9.3E-10 2E-14 105.2 22.4 233 517-796 227-462 (478)
81 KOG1174 Anaphase-promoting com 99.3 1.1E-07 2.4E-12 94.3 37.1 305 509-862 190-503 (564)
82 KOG3617 WD40 and TPR repeat-co 99.3 4.7E-07 1E-11 97.3 43.1 415 143-636 744-1189(1416)
83 KOG1129 TPR repeat-containing 99.3 1.5E-09 3.2E-14 103.9 21.7 225 587-856 227-455 (478)
84 COG3063 PilF Tfp pilus assembl 99.2 8.2E-10 1.8E-14 101.1 18.9 157 737-896 45-204 (250)
85 KOG1840 Kinesin light chain [C 99.2 2.3E-09 5.1E-14 114.6 25.2 237 618-893 199-478 (508)
86 KOG2376 Signal recognition par 99.2 8.2E-07 1.8E-11 92.7 41.9 147 528-678 356-516 (652)
87 PF12569 NARP1: NMDA receptor- 99.2 4.1E-07 8.8E-12 99.1 41.7 129 550-681 196-333 (517)
88 PF12569 NARP1: NMDA receptor- 99.2 5.6E-07 1.2E-11 98.0 42.1 45 742-786 472-516 (517)
89 PF13041 PPR_2: PPR repeat fam 99.2 3.8E-11 8.2E-16 85.7 6.5 49 371-419 1-49 (50)
90 PRK11189 lipoprotein NlpI; Pro 99.2 6.1E-09 1.3E-13 107.4 25.5 222 594-862 37-268 (296)
91 PRK11189 lipoprotein NlpI; Pro 99.2 1E-08 2.2E-13 105.7 26.9 219 560-825 38-266 (296)
92 COG3063 PilF Tfp pilus assembl 99.2 8.8E-09 1.9E-13 94.5 22.3 190 656-889 38-231 (250)
93 KOG0548 Molecular co-chaperone 99.1 2E-06 4.4E-11 89.1 39.7 435 276-807 10-472 (539)
94 KOG0548 Molecular co-chaperone 99.1 5.9E-07 1.3E-11 93.0 34.0 438 381-855 10-485 (539)
95 KOG0624 dsRNA-activated protei 99.0 1.6E-06 3.5E-11 84.1 31.9 314 478-861 38-372 (504)
96 KOG2053 Mitochondrial inherita 99.0 4.7E-05 1E-09 83.9 46.7 149 742-892 454-606 (932)
97 KOG0624 dsRNA-activated protei 99.0 6.7E-06 1.5E-10 80.0 34.3 204 559-789 166-369 (504)
98 KOG1125 TPR repeat-containing 99.0 9.7E-08 2.1E-12 99.4 22.4 88 733-822 436-525 (579)
99 cd05804 StaR_like StaR_like; a 99.0 2E-06 4.4E-11 92.6 34.2 259 592-895 52-337 (355)
100 KOG4340 Uncharacterized conser 99.0 8.9E-07 1.9E-11 84.2 25.9 315 200-538 13-335 (459)
101 KOG4340 Uncharacterized conser 98.9 3.7E-06 8.1E-11 80.0 27.7 322 299-643 6-335 (459)
102 cd05804 StaR_like StaR_like; a 98.9 2.6E-06 5.5E-11 91.8 31.1 269 583-894 6-293 (355)
103 TIGR03302 OM_YfiO outer membra 98.8 2E-07 4.3E-12 93.5 18.4 168 726-895 32-233 (235)
104 PRK04841 transcriptional regul 98.8 2.5E-05 5.3E-10 95.8 38.9 336 488-862 384-763 (903)
105 PLN02789 farnesyltranstransfer 98.8 4.2E-06 9.1E-11 86.1 26.7 120 558-681 47-170 (320)
106 PLN02789 farnesyltranstransfer 98.8 4.9E-06 1.1E-10 85.6 27.0 220 631-892 50-300 (320)
107 KOG1128 Uncharacterized conser 98.8 3.3E-07 7.2E-12 98.0 18.6 219 581-859 396-616 (777)
108 COG5010 TadD Flp pilus assembl 98.8 1.2E-06 2.6E-11 82.8 20.3 157 657-856 70-228 (257)
109 KOG1125 TPR repeat-containing 98.8 3.6E-07 7.8E-12 95.3 18.1 257 591-886 293-563 (579)
110 PF04733 Coatomer_E: Coatomer 98.8 3.4E-07 7.3E-12 92.8 17.5 149 592-789 111-264 (290)
111 KOG2053 Mitochondrial inherita 98.8 0.00086 1.9E-08 74.4 49.5 193 172-369 53-257 (932)
112 PRK04841 transcriptional regul 98.7 3.8E-05 8.3E-10 94.1 38.4 333 453-824 384-760 (903)
113 PRK10370 formate-dependent nit 98.7 1.4E-06 2.9E-11 83.5 19.6 119 742-864 54-178 (198)
114 PF04733 Coatomer_E: Coatomer 98.7 4.8E-07 1E-11 91.8 17.3 113 742-856 146-262 (290)
115 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.2E-11 87.2 20.0 194 615-859 30-232 (235)
116 KOG1070 rRNA processing protei 98.7 1E-05 2.2E-10 92.8 27.1 242 606-891 1447-1697(1710)
117 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.5E-11 92.1 20.6 219 546-823 396-615 (777)
118 COG5010 TadD Flp pilus assembl 98.6 5.8E-06 1.3E-10 78.3 20.3 164 617-822 66-229 (257)
119 PF12854 PPR_1: PPR repeat 98.6 3.5E-08 7.6E-13 62.8 3.8 32 263-294 2-33 (34)
120 PRK15179 Vi polysaccharide bio 98.6 3.6E-06 7.9E-11 95.4 22.4 115 742-860 101-218 (694)
121 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.6E-08 68.9 42.3 184 599-823 309-500 (656)
122 PF12854 PPR_1: PPR repeat 98.6 6.7E-08 1.5E-12 61.5 4.1 33 227-259 2-34 (34)
123 PRK10370 formate-dependent nit 98.6 9.3E-06 2E-10 77.7 20.4 147 590-790 23-173 (198)
124 PRK15179 Vi polysaccharide bio 98.6 1.4E-05 3E-10 90.8 24.8 211 583-856 28-242 (694)
125 COG4783 Putative Zn-dependent 98.5 3.5E-05 7.6E-10 79.5 24.4 113 740-855 319-433 (484)
126 PF07079 DUF1347: Protein of u 98.5 0.0018 3.8E-08 66.3 41.5 130 732-868 384-528 (549)
127 KOG3060 Uncharacterized conser 98.5 8.3E-05 1.8E-09 69.8 24.0 162 586-789 55-219 (289)
128 KOG1070 rRNA processing protei 98.5 7.9E-05 1.7E-09 85.8 28.1 204 549-794 1459-1667(1710)
129 PRK15359 type III secretion sy 98.5 4.2E-06 9E-11 75.7 14.5 105 748-859 14-121 (144)
130 KOG3060 Uncharacterized conser 98.5 8E-05 1.7E-09 69.9 22.5 186 596-824 25-220 (289)
131 PRK14720 transcript cleavage f 98.5 2.4E-05 5.3E-10 89.4 22.9 219 582-876 30-268 (906)
132 TIGR02552 LcrH_SycD type III s 98.4 3.7E-06 7.9E-11 75.9 13.0 111 748-861 4-116 (135)
133 KOG1914 mRNA cleavage and poly 98.4 0.0038 8.3E-08 65.4 42.1 76 372-451 19-94 (656)
134 PRK15359 type III secretion sy 98.4 6.9E-06 1.5E-10 74.2 14.5 91 658-789 29-120 (144)
135 PF09976 TPR_21: Tetratricopep 98.4 1.7E-05 3.6E-10 72.2 15.7 113 742-856 26-144 (145)
136 KOG3081 Vesicle coat complex C 98.3 0.0002 4.4E-09 67.9 21.6 50 742-791 188-237 (299)
137 COG4783 Putative Zn-dependent 98.3 0.00015 3.3E-09 75.0 22.3 139 627-824 315-454 (484)
138 PRK14720 transcript cleavage f 98.3 0.00021 4.5E-09 82.1 25.1 150 585-772 118-268 (906)
139 KOG0550 Molecular chaperone (D 98.3 0.00044 9.5E-09 69.7 23.6 195 616-841 166-368 (486)
140 KOG3081 Vesicle coat complex C 98.3 0.0012 2.6E-08 62.8 25.0 249 486-789 16-270 (299)
141 KOG0553 TPR repeat-containing 98.2 1.6E-05 3.4E-10 76.9 11.2 97 734-834 88-186 (304)
142 PF09976 TPR_21: Tetratricopep 98.2 7.9E-05 1.7E-09 67.7 15.5 133 742-891 7-144 (145)
143 TIGR02552 LcrH_SycD type III s 98.2 7.4E-05 1.6E-09 67.3 15.0 80 742-823 32-113 (135)
144 PRK15363 pathogenicity island 98.1 0.00012 2.6E-09 64.7 14.6 99 758-859 32-132 (157)
145 PRK15363 pathogenicity island 98.1 6.2E-05 1.3E-09 66.6 11.7 89 733-823 41-131 (157)
146 KOG1130 Predicted G-alpha GTPa 98.0 0.0001 2.2E-09 73.7 13.7 130 730-859 198-344 (639)
147 KOG0550 Molecular chaperone (D 98.0 0.00025 5.5E-09 71.4 16.0 261 592-895 58-351 (486)
148 COG4700 Uncharacterized protei 98.0 0.00062 1.3E-08 60.7 16.5 133 758-894 86-222 (251)
149 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 52.6 4.0 33 270-302 2-34 (35)
150 KOG0553 TPR repeat-containing 98.0 9.1E-05 2E-09 71.8 11.6 127 661-830 89-221 (304)
151 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00018 3.9E-09 75.6 14.8 121 623-787 174-294 (395)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0006 1.3E-08 71.7 18.1 122 656-822 172-295 (395)
153 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.7E-10 51.0 4.3 33 164-196 2-34 (35)
154 PF12895 Apc3: Anaphase-promot 97.9 3.5E-05 7.5E-10 62.3 6.1 76 742-820 4-83 (84)
155 PLN03088 SGT1, suppressor of 97.8 0.00023 5.1E-09 75.3 13.8 103 733-839 8-113 (356)
156 PF12895 Apc3: Anaphase-promot 97.8 5.1E-05 1.1E-09 61.3 6.5 78 775-855 3-83 (84)
157 PRK02603 photosystem I assembl 97.8 0.00067 1.5E-08 63.8 14.9 86 758-845 32-121 (172)
158 PF13812 PPR_3: Pentatricopept 97.8 3.1E-05 6.7E-10 49.8 4.0 33 269-301 2-34 (34)
159 PRK10153 DNA-binding transcrip 97.8 0.001 2.2E-08 73.6 18.1 121 742-864 357-487 (517)
160 COG4235 Cytochrome c biogenesi 97.8 0.00066 1.4E-08 66.5 14.7 119 742-864 137-261 (287)
161 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00043 9.3E-09 60.6 12.2 95 764-860 5-106 (119)
162 COG3898 Uncharacterized membra 97.8 0.063 1.4E-06 54.3 29.4 71 792-864 324-397 (531)
163 PF07079 DUF1347: Protein of u 97.8 0.073 1.6E-06 55.0 46.2 358 307-694 132-531 (549)
164 PF13432 TPR_16: Tetratricopep 97.7 8.9E-05 1.9E-09 56.4 6.5 61 734-796 4-64 (65)
165 PF13812 PPR_3: Pentatricopept 97.7 5.2E-05 1.1E-09 48.8 4.0 33 163-195 2-34 (34)
166 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00069 1.5E-08 59.3 12.6 97 728-824 3-105 (119)
167 cd00189 TPR Tetratricopeptide 97.7 0.00041 8.9E-09 57.6 10.7 90 765-857 4-95 (100)
168 COG3898 Uncharacterized membra 97.7 0.081 1.8E-06 53.5 30.7 295 481-828 85-396 (531)
169 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 56.4 11.6 48 742-789 49-96 (100)
170 PRK10866 outer membrane biogen 97.7 0.0039 8.4E-08 61.9 18.4 163 729-893 34-240 (243)
171 COG4235 Cytochrome c biogenesi 97.7 0.0021 4.6E-08 63.1 15.9 113 641-791 145-257 (287)
172 CHL00033 ycf3 photosystem I as 97.6 0.001 2.2E-08 62.3 13.2 113 742-856 14-139 (168)
173 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.2E-08 70.3 14.1 124 508-631 61-186 (429)
174 KOG1130 Predicted G-alpha GTPa 97.6 0.00072 1.6E-08 67.9 12.1 152 742-893 170-343 (639)
175 PF13414 TPR_11: TPR repeat; P 97.6 0.00028 6.1E-09 54.5 7.5 58 732-789 8-66 (69)
176 PF01535 PPR: PPR repeat; Int 97.6 7.4E-05 1.6E-09 46.8 3.3 29 270-298 2-30 (31)
177 PLN03088 SGT1, suppressor of 97.6 0.0014 3E-08 69.5 14.8 48 742-789 51-98 (356)
178 PF12688 TPR_5: Tetratrico pep 97.6 0.0024 5.2E-08 54.7 13.3 94 763-858 3-103 (120)
179 COG4700 Uncharacterized protei 97.5 0.017 3.6E-07 51.9 18.2 109 742-854 104-217 (251)
180 CHL00033 ycf3 photosystem I as 97.5 0.00093 2E-08 62.6 11.5 76 742-819 50-137 (168)
181 PF14938 SNAP: Soluble NSF att 97.5 0.007 1.5E-07 62.1 18.5 81 742-822 130-223 (282)
182 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 45.8 3.4 30 164-193 2-31 (31)
183 PRK02603 photosystem I assembl 97.5 0.0043 9.2E-08 58.3 15.2 94 654-786 36-131 (172)
184 PF10037 MRP-S27: Mitochondria 97.4 0.0019 4.1E-08 68.3 13.4 120 302-421 65-186 (429)
185 PF14938 SNAP: Soluble NSF att 97.4 0.0043 9.4E-08 63.6 15.9 166 728-895 36-226 (282)
186 KOG2041 WD40 repeat protein [G 97.4 0.27 5.9E-06 53.6 28.4 201 229-468 689-903 (1189)
187 PF08579 RPM2: Mitochondrial r 97.4 0.0021 4.6E-08 52.6 10.1 77 273-349 30-115 (120)
188 PF08579 RPM2: Mitochondrial r 97.4 0.0023 5E-08 52.4 10.1 75 345-419 32-115 (120)
189 PF14559 TPR_19: Tetratricopep 97.4 0.0005 1.1E-08 52.9 6.2 56 739-796 3-58 (68)
190 PRK10866 outer membrane biogen 97.4 0.045 9.8E-07 54.3 21.3 193 623-856 37-238 (243)
191 PRK10153 DNA-binding transcrip 97.3 0.02 4.4E-07 63.4 20.2 47 742-789 435-481 (517)
192 PRK10803 tol-pal system protei 97.3 0.0026 5.7E-08 63.5 11.9 87 738-824 154-246 (263)
193 PRK15331 chaperone protein Sic 97.3 0.004 8.7E-08 55.6 11.5 87 735-823 45-133 (165)
194 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.4E-08 51.0 7.1 62 760-823 2-66 (69)
195 PRK11906 transcriptional regul 97.2 0.013 2.9E-07 61.5 16.0 143 742-889 273-431 (458)
196 PF13371 TPR_9: Tetratricopept 97.2 0.0019 4E-08 50.5 7.3 61 736-798 4-64 (73)
197 KOG2796 Uncharacterized conser 97.1 0.15 3.3E-06 48.7 20.6 151 600-798 166-321 (366)
198 PF12688 TPR_5: Tetratrico pep 97.1 0.013 2.8E-07 50.3 12.6 48 742-789 16-66 (120)
199 PF13432 TPR_16: Tetratricopep 97.1 0.0022 4.7E-08 48.7 7.2 57 801-859 3-60 (65)
200 PF13525 YfiO: Outer membrane 97.1 0.02 4.4E-07 55.3 15.7 156 729-886 7-199 (203)
201 PF06239 ECSIT: Evolutionarily 97.1 0.0089 1.9E-07 55.8 11.9 105 265-388 44-153 (228)
202 PF05843 Suf: Suppressor of fo 97.1 0.013 2.7E-07 59.9 14.3 116 584-702 2-121 (280)
203 PF05843 Suf: Suppressor of fo 97.1 0.011 2.3E-07 60.4 13.7 96 199-297 3-99 (280)
204 PRK10803 tol-pal system protei 97.0 0.014 3E-07 58.4 13.3 100 761-862 142-249 (263)
205 PRK15331 chaperone protein Sic 96.9 0.028 6.1E-07 50.3 13.3 100 759-859 35-134 (165)
206 KOG2610 Uncharacterized conser 96.9 0.017 3.7E-07 56.9 12.6 155 736-894 112-276 (491)
207 PRK11906 transcriptional regul 96.9 0.041 8.8E-07 57.9 16.1 109 742-855 319-432 (458)
208 PF06239 ECSIT: Evolutionarily 96.9 0.021 4.5E-07 53.3 12.4 71 352-422 66-152 (228)
209 KOG2041 WD40 repeat protein [G 96.8 1 2.3E-05 49.3 29.2 203 194-434 689-904 (1189)
210 PF13525 YfiO: Outer membrane 96.8 0.15 3.2E-06 49.4 19.0 179 625-850 12-198 (203)
211 PF14559 TPR_19: Tetratricopep 96.8 0.0044 9.5E-08 47.5 6.7 51 773-823 3-53 (68)
212 PF04184 ST7: ST7 protein; In 96.8 0.012 2.7E-07 61.6 11.1 123 732-856 173-321 (539)
213 KOG2796 Uncharacterized conser 96.8 0.29 6.2E-06 46.9 18.9 98 199-297 179-281 (366)
214 KOG0543 FKBP-type peptidyl-pro 96.7 0.027 5.9E-07 57.7 13.0 79 742-822 272-353 (397)
215 KOG1538 Uncharacterized conser 96.7 0.16 3.5E-06 54.7 18.6 96 753-858 739-845 (1081)
216 PF08631 SPO22: Meiosis protei 96.6 0.97 2.1E-05 46.2 25.0 150 742-892 102-273 (278)
217 PF10300 DUF3808: Protein of u 96.6 0.091 2E-06 57.9 17.5 115 742-857 248-374 (468)
218 COG0457 NrfG FOG: TPR repeat [ 96.6 0.87 1.9E-05 45.2 29.6 222 596-861 36-267 (291)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.016 3.4E-07 60.9 10.7 100 723-825 71-175 (453)
220 KOG0543 FKBP-type peptidyl-pro 96.6 0.021 4.6E-07 58.4 11.3 123 733-859 214-355 (397)
221 KOG1538 Uncharacterized conser 96.5 0.4 8.6E-06 51.9 20.1 42 177-221 615-656 (1081)
222 COG4785 NlpI Lipoprotein NlpI, 96.5 0.24 5.2E-06 46.0 16.0 177 628-857 75-264 (297)
223 PF13431 TPR_17: Tetratricopep 96.4 0.0035 7.5E-08 39.8 2.9 33 750-782 2-34 (34)
224 PF13424 TPR_12: Tetratricopep 96.4 0.011 2.5E-07 46.7 6.7 26 831-856 47-72 (78)
225 COG4105 ComL DNA uptake lipopr 96.4 1 2.3E-05 43.7 20.7 180 628-856 44-230 (254)
226 PF13281 DUF4071: Domain of un 96.4 0.87 1.9E-05 47.6 21.5 113 588-702 146-273 (374)
227 COG1729 Uncharacterized protei 96.4 0.067 1.5E-06 52.2 12.7 95 765-859 145-244 (262)
228 COG4105 ComL DNA uptake lipopr 96.4 0.74 1.6E-05 44.7 19.4 166 729-894 36-233 (254)
229 PF03704 BTAD: Bacterial trans 96.3 0.22 4.7E-06 45.2 15.7 57 742-798 77-138 (146)
230 COG1729 Uncharacterized protei 96.3 0.033 7.2E-07 54.2 10.4 95 730-824 144-244 (262)
231 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.4E-07 46.8 6.0 63 761-823 5-74 (78)
232 PF13371 TPR_9: Tetratricopept 96.3 0.02 4.4E-07 44.5 7.5 57 803-861 3-60 (73)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.043 9.3E-07 57.7 11.7 66 757-824 71-141 (453)
234 PF04840 Vps16_C: Vps16, C-ter 96.3 1.7 3.7E-05 45.0 31.9 104 164-292 2-105 (319)
235 KOG2610 Uncharacterized conser 96.3 0.34 7.3E-06 48.2 16.8 45 742-786 190-234 (491)
236 PF13281 DUF4071: Domain of un 96.2 0.56 1.2E-05 48.9 19.3 167 656-860 144-335 (374)
237 COG4649 Uncharacterized protei 96.2 0.24 5.3E-06 44.2 14.0 126 737-863 68-200 (221)
238 KOG4555 TPR repeat-containing 96.2 0.081 1.8E-06 44.6 10.3 51 739-789 55-105 (175)
239 KOG1941 Acetylcholine receptor 96.2 0.31 6.8E-06 48.9 16.1 116 742-857 137-273 (518)
240 PF09205 DUF1955: Domain of un 96.1 0.52 1.1E-05 40.1 14.8 136 738-897 13-152 (161)
241 PF04840 Vps16_C: Vps16, C-ter 96.0 2.3 5E-05 44.1 31.3 107 481-607 180-286 (319)
242 KOG1941 Acetylcholine receptor 96.0 0.2 4.3E-06 50.3 13.9 128 763-890 124-271 (518)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.0 2.6 5.6E-05 44.0 37.0 147 548-700 397-547 (660)
244 COG0457 NrfG FOG: TPR repeat [ 95.9 2 4.4E-05 42.4 32.5 219 562-824 37-265 (291)
245 PF12921 ATP13: Mitochondrial 95.8 0.12 2.7E-06 44.8 10.6 100 162-281 2-101 (126)
246 PF09205 DUF1955: Domain of un 95.8 0.35 7.6E-06 41.1 12.3 51 742-792 101-151 (161)
247 COG3118 Thioredoxin domain-con 95.8 0.62 1.3E-05 46.0 16.0 148 740-891 147-299 (304)
248 KOG2114 Vacuolar assembly/sort 95.7 5 0.00011 45.6 25.5 77 801-881 711-787 (933)
249 KOG2114 Vacuolar assembly/sort 95.7 3.2 6.9E-05 47.0 22.7 175 236-434 338-516 (933)
250 COG5107 RNA14 Pre-mRNA 3'-end 95.4 4.2 9E-05 42.6 39.0 136 619-798 398-537 (660)
251 KOG2280 Vacuolar assembly/sort 95.3 6.4 0.00014 44.2 28.1 110 480-608 686-795 (829)
252 PF13512 TPR_18: Tetratricopep 95.3 0.24 5.3E-06 43.4 10.4 63 730-792 13-78 (142)
253 KOG1920 IkappaB kinase complex 95.3 5.7 0.00012 47.0 23.7 75 770-855 974-1051(1265)
254 PF03704 BTAD: Bacterial trans 95.2 0.19 4.1E-06 45.7 10.4 55 624-679 68-122 (146)
255 KOG1258 mRNA processing protei 95.2 6.1 0.00013 43.3 36.3 124 442-568 296-420 (577)
256 COG3118 Thioredoxin domain-con 95.2 1.7 3.7E-05 43.1 16.8 142 627-809 143-286 (304)
257 KOG4234 TPR repeat-containing 95.2 0.28 6.2E-06 44.9 10.7 95 661-790 103-197 (271)
258 PF10300 DUF3808: Protein of u 95.2 0.7 1.5E-05 51.1 16.3 152 742-896 203-378 (468)
259 COG2976 Uncharacterized protei 95.1 0.94 2E-05 41.8 13.7 115 745-863 70-192 (207)
260 KOG4555 TPR repeat-containing 95.0 0.35 7.7E-06 40.9 10.1 94 767-862 49-147 (175)
261 KOG4642 Chaperone-dependent E3 95.0 0.45 9.7E-06 45.1 11.9 121 733-855 16-142 (284)
262 PF13512 TPR_18: Tetratricopep 95.0 0.65 1.4E-05 40.8 12.2 64 761-824 10-76 (142)
263 PF13428 TPR_14: Tetratricopep 94.9 0.081 1.8E-06 36.1 5.4 36 734-769 8-43 (44)
264 COG4649 Uncharacterized protei 94.9 2.2 4.7E-05 38.5 15.1 145 736-895 48-197 (221)
265 PF08631 SPO22: Meiosis protei 94.8 5.5 0.00012 40.7 25.8 123 173-297 4-150 (278)
266 KOG1258 mRNA processing protei 94.6 8.5 0.00019 42.2 35.6 185 476-667 295-489 (577)
267 PF06552 TOM20_plant: Plant sp 94.6 0.25 5.4E-06 44.9 8.7 109 742-860 6-137 (186)
268 KOG1550 Extracellular protein 94.5 11 0.00024 42.9 24.5 248 595-893 261-537 (552)
269 COG4785 NlpI Lipoprotein NlpI, 94.3 0.73 1.6E-05 43.0 11.1 85 737-823 75-161 (297)
270 PF04184 ST7: ST7 protein; In 94.2 3.3 7.2E-05 44.2 17.2 53 737-789 269-323 (539)
271 PF12921 ATP13: Mitochondrial 94.2 0.74 1.6E-05 40.1 10.7 101 582-702 1-102 (126)
272 KOG1550 Extracellular protein 94.1 13 0.00028 42.3 26.1 77 776-859 454-538 (552)
273 KOG4234 TPR repeat-containing 94.1 0.56 1.2E-05 43.1 10.0 94 735-830 103-201 (271)
274 PF04053 Coatomer_WDAD: Coatom 94.1 1.1 2.3E-05 48.9 14.2 156 628-855 271-427 (443)
275 KOG4648 Uncharacterized conser 94.0 0.32 6.9E-06 48.4 9.0 97 732-830 102-198 (536)
276 KOG1585 Protein required for f 94.0 6.1 0.00013 38.0 18.8 85 551-645 34-118 (308)
277 PF13170 DUF4003: Protein of u 94.0 5.3 0.00012 40.9 18.2 151 669-855 78-242 (297)
278 smart00299 CLH Clathrin heavy 93.8 3 6.4E-05 37.4 14.6 124 732-877 12-137 (140)
279 PF04053 Coatomer_WDAD: Coatom 93.6 1.3 2.9E-05 48.1 13.9 130 270-432 297-426 (443)
280 PF13428 TPR_14: Tetratricopep 93.6 0.14 3E-06 34.9 4.2 35 762-798 2-36 (44)
281 KOG3941 Intermediate in Toll s 93.6 0.49 1.1E-05 45.9 9.1 72 562-633 86-173 (406)
282 KOG3941 Intermediate in Toll s 93.4 0.55 1.2E-05 45.6 9.1 116 265-399 64-185 (406)
283 smart00299 CLH Clathrin heavy 93.3 5.2 0.00011 35.8 15.4 125 552-699 11-136 (140)
284 PF10602 RPN7: 26S proteasome 93.1 1.4 3.1E-05 41.2 11.5 96 761-856 36-139 (177)
285 KOG1585 Protein required for f 92.8 9.5 0.00021 36.7 18.7 138 516-679 34-176 (308)
286 PF13176 TPR_7: Tetratricopept 92.7 0.1 2.2E-06 33.7 2.4 26 833-858 2-27 (36)
287 KOG1586 Protein required for f 92.7 1.2 2.7E-05 42.1 10.1 136 727-865 34-189 (288)
288 PF00515 TPR_1: Tetratricopept 92.6 0.26 5.7E-06 31.1 4.2 32 762-795 2-33 (34)
289 COG2976 Uncharacterized protei 92.6 3.3 7.2E-05 38.4 12.4 115 779-895 70-189 (207)
290 PF13176 TPR_7: Tetratricopept 92.4 0.29 6.2E-06 31.5 4.2 27 763-789 1-27 (36)
291 PF07719 TPR_2: Tetratricopept 92.4 0.24 5.2E-06 31.2 3.9 28 762-789 2-29 (34)
292 KOG2280 Vacuolar assembly/sort 92.3 24 0.00051 40.0 33.7 111 619-786 685-795 (829)
293 PF02259 FAT: FAT domain; Int 92.2 18 0.0004 38.5 24.6 66 616-681 144-212 (352)
294 PF10602 RPN7: 26S proteasome 91.5 3.3 7.1E-05 38.8 11.8 93 799-891 40-139 (177)
295 PF09613 HrpB1_HrpK: Bacterial 91.5 5.3 0.00011 36.0 12.3 104 742-851 25-130 (160)
296 KOG4642 Chaperone-dependent E3 90.9 2.3 5.1E-05 40.5 9.9 119 769-891 18-143 (284)
297 COG0790 FOG: TPR repeat, SEL1 90.8 22 0.00047 36.7 22.9 153 630-825 53-221 (292)
298 PF09613 HrpB1_HrpK: Bacterial 90.6 7.2 0.00016 35.2 12.3 111 766-884 15-128 (160)
299 KOG1920 IkappaB kinase complex 90.5 46 0.001 40.0 29.1 30 371-401 789-820 (1265)
300 KOG4648 Uncharacterized conser 90.2 0.83 1.8E-05 45.6 6.7 102 625-767 104-205 (536)
301 TIGR02561 HrpB1_HrpK type III 90.0 7.9 0.00017 34.3 11.6 69 742-810 25-93 (153)
302 PF07719 TPR_2: Tetratricopept 89.6 0.86 1.9E-05 28.6 4.4 29 832-860 3-31 (34)
303 PF07035 Mic1: Colon cancer-as 89.6 16 0.00036 33.4 15.2 100 290-399 16-115 (167)
304 COG3629 DnrI DNA-binding trans 89.4 4 8.6E-05 40.9 10.8 77 620-697 155-236 (280)
305 COG3629 DnrI DNA-binding trans 89.3 3.8 8.3E-05 41.0 10.6 56 742-797 168-228 (280)
306 PF00515 TPR_1: Tetratricopept 89.3 0.91 2E-05 28.6 4.3 29 832-860 3-31 (34)
307 KOG3807 Predicted membrane pro 89.2 4.1 8.9E-05 40.7 10.5 144 734-891 191-337 (556)
308 PF06552 TOM20_plant: Plant sp 89.2 3.8 8.3E-05 37.5 9.5 77 742-826 50-138 (186)
309 PRK15180 Vi polysaccharide bio 88.8 3.3 7.1E-05 43.5 9.9 132 727-860 289-421 (831)
310 PRK09687 putative lyase; Provi 88.6 30 0.00066 35.2 27.8 18 266-283 66-83 (280)
311 PF13170 DUF4003: Protein of u 88.6 32 0.00069 35.3 20.3 128 566-695 80-224 (297)
312 KOG0276 Vesicle coat complex C 87.7 12 0.00025 41.0 13.4 99 738-855 648-746 (794)
313 PF08424 NRDE-2: NRDE-2, neces 87.7 28 0.00061 36.4 16.5 145 749-897 7-186 (321)
314 PF07035 Mic1: Colon cancer-as 87.5 23 0.0005 32.5 15.0 132 254-400 16-147 (167)
315 KOG4570 Uncharacterized conser 87.2 5.9 0.00013 39.5 10.0 102 226-332 58-164 (418)
316 PF13181 TPR_8: Tetratricopept 86.9 1 2.2E-05 28.3 3.4 27 763-789 3-29 (34)
317 PF13431 TPR_17: Tetratricopep 86.4 0.52 1.1E-05 29.8 1.8 31 818-850 2-33 (34)
318 PF09986 DUF2225: Uncharacteri 86.1 12 0.00027 36.2 11.9 94 771-864 87-199 (214)
319 PF02259 FAT: FAT domain; Int 86.0 51 0.0011 35.0 22.6 53 555-611 5-57 (352)
320 KOG2062 26S proteasome regulat 85.9 70 0.0015 36.4 37.2 85 594-681 368-456 (929)
321 PF10345 Cohesin_load: Cohesin 85.7 77 0.0017 36.8 42.0 152 741-893 418-605 (608)
322 PF14561 TPR_20: Tetratricopep 85.7 7.4 0.00016 31.5 8.5 64 747-810 8-73 (90)
323 KOG0687 26S proteasome regulat 85.4 45 0.00097 33.8 15.7 100 760-859 103-210 (393)
324 KOG2471 TPR repeat-containing 84.6 30 0.00064 37.1 14.1 134 742-876 221-380 (696)
325 PF04097 Nic96: Nup93/Nic96; 84.4 86 0.0019 36.3 24.1 87 590-681 265-355 (613)
326 KOG1308 Hsp70-interacting prot 84.3 1.2 2.7E-05 44.8 4.1 113 739-855 126-240 (377)
327 TIGR02561 HrpB1_HrpK type III 84.0 31 0.00066 30.8 12.7 71 772-845 21-93 (153)
328 PF13374 TPR_10: Tetratricopep 83.9 2.5 5.5E-05 27.9 4.5 28 762-789 3-30 (42)
329 KOG4570 Uncharacterized conser 83.5 11 0.00023 37.8 9.9 105 507-613 58-165 (418)
330 PRK09687 putative lyase; Provi 83.5 55 0.0012 33.4 28.7 218 266-506 35-262 (280)
331 KOG2066 Vacuolar assembly/sort 83.1 95 0.0021 35.7 28.8 29 843-877 674-702 (846)
332 KOG1586 Protein required for f 82.1 50 0.0011 31.8 21.1 86 742-829 129-227 (288)
333 COG3947 Response regulator con 81.8 59 0.0013 32.5 15.8 73 738-822 266-340 (361)
334 PF04097 Nic96: Nup93/Nic96; 81.6 1.1E+02 0.0024 35.4 24.9 88 380-472 265-356 (613)
335 PF13181 TPR_8: Tetratricopept 81.4 3.7 8E-05 25.6 4.3 29 832-860 3-31 (34)
336 PF13174 TPR_6: Tetratricopept 81.1 2.3 5E-05 26.3 3.2 26 764-789 3-28 (33)
337 PF13374 TPR_10: Tetratricopep 81.0 3.3 7.1E-05 27.3 4.2 28 831-858 3-30 (42)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 80.8 9.2 0.0002 30.9 6.8 45 216-260 26-70 (103)
339 PF13174 TPR_6: Tetratricopept 80.6 2.2 4.8E-05 26.4 3.0 31 730-760 3-33 (33)
340 COG1747 Uncharacterized N-term 80.0 96 0.0021 33.7 25.8 96 547-647 65-160 (711)
341 PF13929 mRNA_stabil: mRNA sta 79.7 51 0.0011 33.1 13.2 63 158-220 198-261 (292)
342 PF10345 Cohesin_load: Cohesin 79.5 1.3E+02 0.0028 35.0 42.7 184 146-330 40-252 (608)
343 COG2909 MalT ATP-dependent tra 78.8 1.4E+02 0.0031 35.0 26.8 226 557-820 424-684 (894)
344 PF02284 COX5A: Cytochrome c o 78.5 8.5 0.00018 31.4 6.1 46 215-260 28-73 (108)
345 PF10579 Rapsyn_N: Rapsyn N-te 78.4 5.4 0.00012 30.8 4.8 49 807-855 18-68 (80)
346 COG5187 RPN7 26S proteasome re 78.4 76 0.0016 31.6 15.1 100 760-859 114-221 (412)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 77.9 17 0.00036 29.5 7.4 46 566-611 25-70 (103)
348 PF07575 Nucleopor_Nup85: Nup8 77.8 1.3E+02 0.0028 34.6 18.0 31 632-662 509-539 (566)
349 PHA02875 ankyrin repeat protei 77.2 57 0.0012 35.7 14.8 50 203-256 38-89 (413)
350 PF11207 DUF2989: Protein of u 77.0 19 0.00042 33.9 8.9 72 670-781 123-198 (203)
351 PF09986 DUF2225: Uncharacteri 76.9 27 0.00058 33.9 10.5 95 805-899 87-199 (214)
352 KOG3364 Membrane protein invol 75.8 28 0.00061 30.3 8.8 66 758-823 29-99 (149)
353 KOG2582 COP9 signalosome, subu 75.8 1E+02 0.0023 31.9 19.1 17 244-260 195-211 (422)
354 PF07721 TPR_4: Tetratricopept 75.4 4.2 9.1E-05 23.7 2.9 21 834-854 5-25 (26)
355 KOG0276 Vesicle coat complex C 75.3 41 0.00088 37.2 11.8 99 419-538 648-746 (794)
356 KOG2063 Vacuolar assembly/sort 75.2 1.9E+02 0.0041 34.6 23.7 26 481-506 507-532 (877)
357 KOG2066 Vacuolar assembly/sort 75.0 1.7E+02 0.0036 33.9 29.2 47 339-389 393-439 (846)
358 PF07721 TPR_4: Tetratricopept 74.9 4.6 0.0001 23.5 3.0 23 763-785 3-25 (26)
359 KOG0376 Serine-threonine phosp 74.7 5.6 0.00012 42.4 5.4 60 742-803 53-113 (476)
360 COG0790 FOG: TPR repeat, SEL1 74.4 1.1E+02 0.0024 31.5 23.8 31 742-775 206-236 (292)
361 COG1747 Uncharacterized N-term 74.2 1.4E+02 0.003 32.6 25.9 95 407-506 65-159 (711)
362 COG4455 ImpE Protein of avirul 74.0 16 0.00036 34.5 7.6 62 734-797 8-69 (273)
363 PF11207 DUF2989: Protein of u 73.3 32 0.0007 32.4 9.4 73 777-850 122-198 (203)
364 smart00028 TPR Tetratricopepti 73.1 6 0.00013 23.6 3.5 27 763-789 3-29 (34)
365 PF02284 COX5A: Cytochrome c o 72.3 20 0.00044 29.4 6.7 43 639-681 31-73 (108)
366 PHA02875 ankyrin repeat protei 71.6 1.1E+02 0.0024 33.4 15.3 11 502-512 219-229 (413)
367 TIGR02508 type_III_yscG type I 71.5 45 0.00097 27.3 8.4 12 595-606 51-62 (115)
368 KOG0403 Neoplastic transformat 71.5 1.5E+02 0.0032 31.7 25.0 60 799-862 513-575 (645)
369 KOG0376 Serine-threonine phosp 71.2 9.5 0.00021 40.7 6.2 93 735-831 12-106 (476)
370 COG5159 RPN6 26S proteasome re 71.2 1.2E+02 0.0025 30.4 14.7 57 799-855 129-190 (421)
371 KOG1308 Hsp70-interacting prot 71.1 4.9 0.00011 40.7 3.8 94 771-868 124-220 (377)
372 KOG4507 Uncharacterized conser 71.1 12 0.00026 40.7 6.9 114 744-860 590-706 (886)
373 PRK10941 hypothetical protein; 71.0 51 0.0011 33.3 11.0 50 742-791 196-245 (269)
374 KOG3364 Membrane protein invol 69.9 46 0.001 29.0 8.7 68 793-861 29-102 (149)
375 smart00028 TPR Tetratricopepti 68.9 8.6 0.00019 22.8 3.6 28 832-859 3-30 (34)
376 COG4941 Predicted RNA polymera 68.5 92 0.002 31.9 11.7 132 735-868 264-403 (415)
377 TIGR03504 FimV_Cterm FimV C-te 68.2 11 0.00023 25.6 3.8 22 836-857 5-26 (44)
378 PF10579 Rapsyn_N: Rapsyn N-te 68.1 16 0.00036 28.3 5.2 49 773-821 18-69 (80)
379 KOG4507 Uncharacterized conser 68.1 15 0.00032 40.1 6.8 88 665-791 619-706 (886)
380 TIGR03504 FimV_Cterm FimV C-te 67.5 15 0.00032 24.9 4.4 25 766-790 4-28 (44)
381 PF04910 Tcf25: Transcriptiona 67.1 1.8E+02 0.0039 31.0 19.5 151 650-823 37-221 (360)
382 KOG0890 Protein kinase of the 66.7 4.3E+02 0.0094 35.3 32.9 152 518-677 1388-1542(2382)
383 PF00637 Clathrin: Region in C 66.6 2.4 5.1E-05 38.2 0.7 53 275-327 14-66 (143)
384 PF14853 Fis1_TPR_C: Fis1 C-te 66.2 11 0.00025 26.7 3.9 31 764-796 4-34 (53)
385 KOG0292 Vesicle coat complex C 66.0 50 0.0011 38.3 10.5 131 740-898 656-786 (1202)
386 COG2909 MalT ATP-dependent tra 65.9 2.8E+02 0.0061 32.8 28.3 223 593-855 425-684 (894)
387 KOG2396 HAT (Half-A-TPR) repea 64.3 2.2E+02 0.0048 31.1 41.1 102 650-789 456-558 (568)
388 KOG2396 HAT (Half-A-TPR) repea 63.5 2.3E+02 0.005 31.0 39.7 99 792-892 455-557 (568)
389 PF07575 Nucleopor_Nup85: Nup8 63.1 2.8E+02 0.0061 31.9 17.9 48 107-154 149-197 (566)
390 KOG1464 COP9 signalosome, subu 62.9 1.6E+02 0.0035 29.0 22.9 120 621-775 148-286 (440)
391 TIGR02508 type_III_yscG type I 62.7 56 0.0012 26.8 7.4 78 213-298 21-98 (115)
392 KOG2297 Predicted translation 61.9 1.9E+02 0.004 29.4 18.1 194 100-323 140-341 (412)
393 PF00637 Clathrin: Region in C 61.4 2.8 6E-05 37.7 0.1 53 345-397 14-66 (143)
394 smart00386 HAT HAT (Half-A-TPR 60.7 20 0.00043 21.7 4.1 29 742-770 2-30 (33)
395 PF07163 Pex26: Pex26 protein; 59.8 1E+02 0.0023 30.8 10.2 87 485-571 90-181 (309)
396 KOG4814 Uncharacterized conser 58.6 77 0.0017 35.4 10.0 85 736-822 363-455 (872)
397 COG3947 Response regulator con 58.5 2.1E+02 0.0046 28.9 17.4 70 620-690 281-355 (361)
398 PF11838 ERAP1_C: ERAP1-like C 58.1 2.4E+02 0.0052 29.4 19.3 82 248-332 146-230 (324)
399 PF14689 SPOB_a: Sensor_kinase 57.9 29 0.00063 25.7 5.0 24 833-856 26-49 (62)
400 PF07163 Pex26: Pex26 protein; 57.5 1.3E+02 0.0027 30.2 10.3 87 310-396 90-181 (309)
401 KOG0403 Neoplastic transformat 57.0 2.8E+02 0.006 29.8 30.2 79 724-805 506-584 (645)
402 PF04910 Tcf25: Transcriptiona 56.8 2.7E+02 0.0059 29.7 17.0 105 754-858 33-167 (360)
403 KOG0545 Aryl-hydrocarbon recep 56.7 82 0.0018 30.7 8.7 62 799-862 234-296 (329)
404 PF12862 Apc5: Anaphase-promot 55.3 56 0.0012 26.7 6.8 52 738-789 9-69 (94)
405 PRK10941 hypothetical protein; 55.1 1E+02 0.0023 31.1 9.9 56 766-823 186-243 (269)
406 COG4976 Predicted methyltransf 54.8 25 0.00054 33.7 5.0 57 739-797 7-63 (287)
407 PF14853 Fis1_TPR_C: Fis1 C-te 54.8 28 0.00062 24.7 4.2 29 833-861 4-32 (53)
408 PF08424 NRDE-2: NRDE-2, neces 53.8 2.8E+02 0.0061 29.0 20.4 122 742-873 80-227 (321)
409 KOG4521 Nuclear pore complex, 53.2 4.8E+02 0.01 32.0 15.6 24 658-681 925-948 (1480)
410 PF14689 SPOB_a: Sensor_kinase 52.9 37 0.0008 25.1 4.8 25 799-823 27-51 (62)
411 PF00244 14-3-3: 14-3-3 protei 52.4 2.2E+02 0.0048 28.1 11.7 19 771-789 179-197 (236)
412 KOG4077 Cytochrome c oxidase, 52.1 95 0.0021 26.7 7.4 45 568-612 69-113 (149)
413 PF11838 ERAP1_C: ERAP1-like C 51.8 3E+02 0.0065 28.7 17.6 82 354-438 146-231 (324)
414 KOG0551 Hsp90 co-chaperone CNS 51.6 60 0.0013 33.1 7.3 87 734-822 88-180 (390)
415 KOG0991 Replication factor C, 50.5 2.5E+02 0.0054 27.4 16.0 51 758-809 236-286 (333)
416 KOG4279 Serine/threonine prote 50.2 4.6E+02 0.01 30.3 16.2 189 636-860 181-396 (1226)
417 PF10155 DUF2363: Uncharacteri 49.7 1.8E+02 0.0038 25.4 11.1 42 85-133 4-45 (126)
418 PF12862 Apc5: Anaphase-promot 49.6 85 0.0018 25.6 7.1 25 835-859 46-70 (94)
419 PRK11619 lytic murein transgly 48.2 5.1E+02 0.011 30.3 38.2 138 383-530 43-180 (644)
420 KOG1464 COP9 signalosome, subu 48.0 2.9E+02 0.0063 27.4 21.7 224 587-855 69-328 (440)
421 KOG3824 Huntingtin interacting 47.7 34 0.00073 34.2 4.9 57 738-796 127-183 (472)
422 PF11663 Toxin_YhaV: Toxin wit 47.6 25 0.00053 30.6 3.5 23 146-170 114-136 (140)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 47.1 2E+02 0.0042 25.1 12.2 46 811-856 79-125 (126)
424 KOG0687 26S proteasome regulat 47.0 3.4E+02 0.0074 27.9 14.7 24 516-539 107-130 (393)
425 KOG2659 LisH motif-containing 46.5 1.4E+02 0.0031 28.9 8.7 97 758-856 23-129 (228)
426 COG4259 Uncharacterized protei 46.4 1E+02 0.0022 25.2 6.4 40 816-855 58-97 (121)
427 KOG2908 26S proteasome regulat 45.7 3.4E+02 0.0074 28.1 11.5 83 765-847 79-174 (380)
428 KOG2297 Predicted translation 45.0 3.5E+02 0.0076 27.5 21.4 105 161-290 110-218 (412)
429 KOG2422 Uncharacterized conser 44.7 5E+02 0.011 29.2 13.4 136 724-859 281-448 (665)
430 PF09477 Type_III_YscG: Bacter 44.6 1.9E+02 0.0041 24.2 9.0 83 208-298 17-99 (116)
431 COG4455 ImpE Protein of avirul 44.4 3E+02 0.0065 26.6 14.4 73 765-839 5-81 (273)
432 KOG4077 Cytochrome c oxidase, 44.1 1.6E+02 0.0035 25.4 7.6 45 601-645 67-111 (149)
433 PF11817 Foie-gras_1: Foie gra 43.9 1.3E+02 0.0029 29.9 8.9 55 799-853 182-241 (247)
434 PF06957 COPI_C: Coatomer (COP 43.8 4.6E+02 0.01 28.5 14.1 28 837-864 307-334 (422)
435 PHA03100 ankyrin repeat protei 43.7 3.7E+02 0.008 30.0 13.6 9 346-354 181-189 (480)
436 PF13762 MNE1: Mitochondrial s 43.7 2.4E+02 0.0052 25.3 11.5 47 374-420 80-127 (145)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 42.4 88 0.0019 27.3 6.4 42 745-786 81-124 (126)
438 PF14561 TPR_20: Tetratricopep 42.4 1.8E+02 0.004 23.5 9.1 31 830-860 22-52 (90)
439 PF12968 DUF3856: Domain of Un 42.3 2.2E+02 0.0048 24.4 10.4 48 740-787 22-81 (144)
440 PF15297 CKAP2_C: Cytoskeleton 42.3 1.1E+02 0.0023 31.8 7.6 63 812-876 120-186 (353)
441 KOG2659 LisH motif-containing 41.6 1.9E+02 0.0042 28.0 8.8 105 782-890 14-128 (228)
442 PF09670 Cas_Cas02710: CRISPR- 41.3 3.2E+02 0.007 29.4 11.7 54 592-646 140-197 (379)
443 KOG0551 Hsp90 co-chaperone CNS 40.0 2.3E+02 0.0049 29.3 9.2 47 742-788 134-180 (390)
444 PF13762 MNE1: Mitochondrial s 39.9 2.8E+02 0.0061 24.9 10.0 45 163-207 80-125 (145)
445 PF04781 DUF627: Protein of un 39.6 2.3E+02 0.0051 23.9 8.6 31 734-764 3-33 (111)
446 PF09797 NatB_MDM20: N-acetylt 39.4 5.1E+02 0.011 27.7 25.1 112 742-854 198-310 (365)
447 TIGR02710 CRISPR-associated pr 39.1 4.8E+02 0.01 27.9 12.1 26 662-687 139-164 (380)
448 COG4259 Uncharacterized protei 38.9 1.8E+02 0.0038 23.9 6.7 54 742-797 52-106 (121)
449 PF07720 TPR_3: Tetratricopept 38.2 73 0.0016 20.5 3.8 23 763-785 3-25 (36)
450 KOG2581 26S proteasome regulat 38.1 5.3E+02 0.011 27.6 16.3 98 582-679 123-235 (493)
451 PF12968 DUF3856: Domain of Un 37.7 2.6E+02 0.0057 24.0 10.6 15 875-889 110-124 (144)
452 KOG4279 Serine/threonine prote 37.6 5.4E+02 0.012 29.8 12.4 60 620-682 203-272 (1226)
453 KOG2300 Uncharacterized conser 37.4 5.9E+02 0.013 27.9 37.7 154 741-894 337-514 (629)
454 cd02680 MIT_calpain7_2 MIT: do 37.2 91 0.002 24.2 4.9 18 842-859 18-35 (75)
455 KOG0686 COP9 signalosome, subu 37.0 5.5E+02 0.012 27.4 12.0 162 730-894 153-333 (466)
456 PRK13800 putative oxidoreducta 36.8 8.9E+02 0.019 29.8 29.1 249 335-612 632-881 (897)
457 PRK13800 putative oxidoreducta 36.5 9E+02 0.02 29.8 29.8 247 406-681 633-880 (897)
458 smart00777 Mad3_BUB1_I Mad3/BU 36.4 1.5E+02 0.0032 25.8 6.6 41 814-854 82-123 (125)
459 PF09670 Cas_Cas02710: CRISPR- 36.3 3.6E+02 0.0078 29.0 11.1 59 732-790 136-198 (379)
460 PF04762 IKI3: IKI3 family; I 36.2 2.8E+02 0.0061 34.0 11.3 138 737-891 788-927 (928)
461 PF11848 DUF3368: Domain of un 35.8 1.3E+02 0.0029 20.8 5.1 31 174-204 14-44 (48)
462 PF04190 DUF410: Protein of un 35.6 4.8E+02 0.01 26.3 20.4 21 802-822 148-168 (260)
463 KOG0530 Protein farnesyltransf 35.4 4.7E+02 0.01 26.2 12.7 124 737-861 53-178 (318)
464 PF11663 Toxin_YhaV: Toxin wit 35.1 37 0.00081 29.5 2.7 30 350-381 107-136 (140)
465 cd02679 MIT_spastin MIT: domai 34.9 1.1E+02 0.0023 24.1 5.0 61 810-893 4-67 (79)
466 COG2178 Predicted RNA-binding 34.7 4E+02 0.0087 25.2 9.8 15 386-400 134-148 (204)
467 PRK13342 recombination factor 34.1 6.5E+02 0.014 27.5 18.9 32 281-312 243-274 (413)
468 PF13929 mRNA_stabil: mRNA sta 34.0 5.2E+02 0.011 26.3 22.6 113 389-501 144-261 (292)
469 PRK12798 chemotaxis protein; R 33.4 6.4E+02 0.014 27.2 22.5 51 631-681 125-176 (421)
470 PRK11619 lytic murein transgly 33.2 8.5E+02 0.018 28.5 41.0 209 561-787 254-465 (644)
471 PF11848 DUF3368: Domain of un 33.1 1.5E+02 0.0033 20.5 5.1 30 280-309 14-43 (48)
472 PF11846 DUF3366: Domain of un 32.7 1.8E+02 0.004 27.6 7.6 32 265-296 141-172 (193)
473 PF04762 IKI3: IKI3 family; I 32.1 4.2E+02 0.009 32.6 11.9 49 801-855 878-926 (928)
474 PF11846 DUF3366: Domain of un 32.0 1.6E+02 0.0035 28.0 7.0 32 300-331 141-172 (193)
475 KOG4814 Uncharacterized conser 31.9 3.5E+02 0.0077 30.6 9.9 47 742-788 409-455 (872)
476 PRK12798 chemotaxis protein; R 31.8 6.8E+02 0.015 27.0 21.8 191 595-828 124-328 (421)
477 PF10963 DUF2765: Protein of u 31.6 1.4E+02 0.0031 23.6 5.2 34 100-133 10-43 (83)
478 PF10255 Paf67: RNA polymerase 31.5 2.2E+02 0.0048 30.7 8.3 59 799-857 126-191 (404)
479 KOG0545 Aryl-hydrocarbon recep 31.4 5.2E+02 0.011 25.5 14.7 49 741-789 244-292 (329)
480 PF11817 Foie-gras_1: Foie gra 31.0 2.1E+02 0.0045 28.6 7.9 61 832-892 180-245 (247)
481 PF09454 Vps23_core: Vps23 cor 30.7 93 0.002 23.3 3.9 49 581-630 6-54 (65)
482 KOG0530 Protein farnesyltransf 30.6 5.6E+02 0.012 25.6 19.8 146 745-892 131-295 (318)
483 PF04781 DUF627: Protein of un 30.3 3.4E+02 0.0074 23.0 9.0 46 744-789 61-106 (111)
484 COG5187 RPN7 26S proteasome re 29.6 6.1E+02 0.013 25.7 13.5 30 652-681 114-143 (412)
485 PRK10564 maltose regulon perip 29.5 98 0.0021 31.4 5.0 30 341-370 260-289 (303)
486 COG4941 Predicted RNA polymera 28.9 6.8E+02 0.015 26.0 11.4 52 175-227 269-326 (415)
487 cd00280 TRFH Telomeric Repeat 28.7 3.5E+02 0.0075 25.4 7.8 67 319-388 85-158 (200)
488 PF04190 DUF410: Protein of un 28.5 6.2E+02 0.013 25.5 20.7 25 652-676 89-113 (260)
489 PF00244 14-3-3: 14-3-3 protei 28.3 5.9E+02 0.013 25.2 14.9 57 624-680 7-64 (236)
490 cd08819 CARD_MDA5_2 Caspase ac 28.2 3.2E+02 0.0069 22.0 7.5 14 352-365 50-63 (88)
491 smart00777 Mad3_BUB1_I Mad3/BU 28.1 4.1E+02 0.0088 23.2 8.3 20 870-889 104-123 (125)
492 COG0735 Fur Fe2+/Zn2+ uptake r 27.8 3E+02 0.0064 24.8 7.5 61 151-212 10-70 (145)
493 KOG1839 Uncharacterized protei 27.6 6.4E+02 0.014 31.5 11.9 127 733-859 938-1086(1236)
494 PF02847 MA3: MA3 domain; Int 27.0 2.8E+02 0.0061 23.3 7.1 21 238-258 8-28 (113)
495 PRK13342 recombination factor 26.8 8.6E+02 0.019 26.5 20.2 65 588-652 232-304 (413)
496 PF10366 Vps39_1: Vacuolar sor 26.4 3.9E+02 0.0086 22.5 7.7 26 376-401 42-67 (108)
497 COG2178 Predicted RNA-binding 25.7 5.8E+02 0.013 24.2 10.6 16 208-223 40-55 (204)
498 PF10255 Paf67: RNA polymerase 25.4 5.4E+02 0.012 27.8 9.9 59 834-892 126-191 (404)
499 PRK10564 maltose regulon perip 25.1 1.3E+02 0.0029 30.5 5.1 28 587-614 261-288 (303)
500 COG0735 Fur Fe2+/Zn2+ uptake r 24.6 3.5E+02 0.0077 24.3 7.4 40 786-825 11-50 (145)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-85 Score=779.31 Aligned_cols=676 Identities=17% Similarity=0.231 Sum_probs=651.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLV 239 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 239 (902)
|+..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..|.+++..+.+.|..++..++|+|+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCh
Q 048778 240 LGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLT 319 (902)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 319 (902)
.+|++.|+++.|+++|++|.+ ||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048778 320 DKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALM 399 (902)
Q Consensus 320 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (902)
+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975 69999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048778 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479 (902)
Q Consensus 400 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (902)
.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 47899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|..++..+|++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 560 KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEM 639 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (902)
+.|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999964 7889999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCC
Q 048778 640 LLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAG 719 (902)
Q Consensus 640 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (902)
++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .||..+|++++.+|++.|
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G----------------- 568 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG----------------- 568 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC-----------------
Confidence 9999999999999999999999999999999999999887 689999999999999999
Q ss_pred CCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCchHh
Q 048778 720 SSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIM-KSGVFPAKA 797 (902)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~ 797 (902)
+.++|.++|++|.+.+ .||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 569 ----------------------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 569 ----------------------KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred ----------------------CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 9999999999999998 9999999999999999999999999999999 678999988
Q ss_pred H-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 798 I-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 798 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
+ ..++++|++.|++++|.+++++|. +.||..+|..++.++...|+.+.+....+++++..+. +...|..+...|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHH
Confidence 8 999999999999999999999983 6899999999999999999999999999998776533 3445666677899
Q ss_pred cCCcHhHHHHHHHHHHhcCcccCCC
Q 048778 877 TGDELGKSIDLLNLIDQVHYRQRPV 901 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~~~~~~~~~ 901 (902)
..|+|++|.++++.|.++|++|+|+
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-85 Score=778.81 Aligned_cols=744 Identities=18% Similarity=0.221 Sum_probs=660.5
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHH---------------HhccCCh
Q 048778 76 SQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELI---------------KECSDSK 140 (902)
Q Consensus 76 ~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~---------------~~~~~~~ 140 (902)
...+...+. +..|+.+|..+.. .++.|+..+|..++..+.+.+.+..+..++..++ ..+++.+
T Consensus 58 i~~l~~~g~-~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 58 LRALCSHGQ-LEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 333434555 9999999999855 5778999999999999999988888887776544 3334455
Q ss_pred hhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048778 141 DDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFF 220 (902)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (902)
+ +..|.++|++|++ ||+.+||++|.+|++.|++++|+.+|++|...|+.||.+||++++++|++.+++..+.+++
T Consensus 136 ~-~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 136 E-LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred C-hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 5 7789999999986 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 221 CRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 300 (902)
..|.+.|+.||++++|+||.+|+++|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 301 PSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLI 380 (902)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 380 (902)
||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||.++||++|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 7999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 048778 381 NGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLD 460 (902)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 460 (902)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+++|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 461 IALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV 540 (902)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (902)
+|.++|++|.+ +|..+|+++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.
T Consensus 442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999974 6889999999999999999999999999986 589999999999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048778 541 QNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHT 620 (902)
Q Consensus 541 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 620 (902)
+.|..++..++|+++++|++.|++++|..+|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+.||..|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999999999999987 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMF-DLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|++|+.+|.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 7899999999999999999999999999999998 48999999999999999
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..+ +.+.|....+++.+..|.+...|..|++.|...|+|++
T Consensus 669 ~~~---------------------------------------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 669 IHR---------------------------------------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HcC---------------------------------------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHhH-H----HHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH------HHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI-T----SIIGCYCKER--------KYDDCLEFMNLILESGFVPSFESHCTVI------QGL 840 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~-~----~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~------~~l 840 (902)
|.++.+.|.+.|++++... . ..+..+.... -++.-..+..+|.+.|+.||........ ...
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~ 789 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHH
Confidence 9999999999999887754 1 1111111100 1233445677888899999853211000 000
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
....++.-|..++. .+|.... .....+.-.|+-..+.++..++..+.
T Consensus 790 ~hse~la~a~~l~~------~~~~~~i--~i~knlr~c~dch~~~k~~s~~~~r~ 836 (857)
T PLN03077 790 GHSERLAIAFGLIN------TVPGMPI--WVTKNLYMCENCHNTVKFISKIVRRE 836 (857)
T ss_pred hccHHHHHHHhhhc------CCCCCeE--EEeCCCEeCccHHHHHHHHHHHhCeE
Confidence 01111111111111 1222211 12334555788889999888877664
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-71 Score=640.55 Aligned_cols=523 Identities=17% Similarity=0.200 Sum_probs=411.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGF-VLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (902)
++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|..+|..|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4556677777777777777777777777777774 45666677777777777777777777777753 777777777
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
+.+|++.|+++.|.++|+.|.+. |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777776 77777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ--DGHFPGVVTYNVLINGYCKQGRIIAAFELL 396 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (902)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 566777777777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 397 ALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVP 476 (902)
Q Consensus 397 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (902)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 477 DGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLD 556 (902)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (902)
|..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHCC
Q 048778 557 VLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR-----------------------AGNIALAMSMIEVMKLAG 613 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~~~~ 613 (902)
+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ .+..+.|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777777754321 123467999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048778 614 CPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689 (902)
Q Consensus 614 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 689 (902)
+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|.+.|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999998889999999999999999888899999999999998542 468999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-70 Score=634.82 Aligned_cols=549 Identities=21% Similarity=0.305 Sum_probs=501.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhh
Q 048778 192 GFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGF-CLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVT 270 (902)
Q Consensus 192 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 270 (902)
...++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|..+|+.|.. ||..+
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 3456777899999999999999999999999999986 56788888999999999999999999999974 99999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 271 FTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCR 350 (902)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (902)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEK--RTCKPNIRTYNELMEGLCRMNKSYKAV 428 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~li~~~~~~g~~~~A~ 428 (902)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKG 508 (902)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 508 (902)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 509 ISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTI 588 (902)
Q Consensus 509 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (902)
+.||..+|+++|.+|++.|++++|.++|++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|. +++++|..+.+.+.... + .......+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKW 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccch
Confidence 99999999999999999999999999999999999986554 25667766655544321 0 111112234
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
.++|..+|++|++.|+.||..+|+.++.++++.+ ..+.+..
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~---------------------------------------~~~~~~~ 868 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH---------------------------------------DATLRNR 868 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc---------------------------------------cHHHHHH
Confidence 5679999999999999999999999998887777 8889999
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 749 LRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 749 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
+++.+...+ +++..+|+.|+.++++. .++|..++++|.+.|+.|+...
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 999888776 88999999999998543 4789999999999999998864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-65 Score=593.16 Aligned_cols=513 Identities=22% Similarity=0.297 Sum_probs=475.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADG-FVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (902)
.+..+|+.+|.+|++.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||+.+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
+.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999985 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL 398 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (902)
.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.. +|+++||++|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048778 399 MEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG 478 (902)
Q Consensus 399 m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (902)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4799
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHH
Q 048778 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ-NTDLKTPHVLNSFLDV 557 (902)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~ 557 (902)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 558 LCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637 (902)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (902)
|++.|++++|.+++++| +..|+..+|++++.+|...|+++.|..+++++.+.+ +.+..+|..|+++|++.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999998876 578999999999999999999999999999997653 33567999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHH-------HH---HH-hcCCHHHHHHHHHHHHHCCCCCCHH
Q 048778 638 EMLLFKMFDLGVSPNH-ITYSILV-------RA---HA-STGRLDHAFKIVSFMVANGCQLNSN 689 (902)
Q Consensus 638 ~~~~~~m~~~g~~p~~-~~~~~l~-------~~---~~-~~g~~~~A~~~~~~m~~~g~~~~~~ 689 (902)
.++++.|.+.|+.... .+|..+. .. +- ...-++...++..+|.+.|+.||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999976432 2221110 00 00 0112345567788888889988753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-64 Score=584.50 Aligned_cols=513 Identities=18% Similarity=0.262 Sum_probs=468.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 265 RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKG-WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3566788888888888888888888888888764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048778 344 LIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNK 423 (902)
Q Consensus 344 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 423 (902)
++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999964 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048778 424 SYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGL 503 (902)
Q Consensus 424 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (902)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|. .+|..+|+++|.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 504 MVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 504 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..|+..+|++++++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 799
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD-LGVSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 662 (902)
.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|++.|++++|.+++++| ++.|+..+|++|+.+|+..| +
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g---------------------------------------~ 509 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK---------------------------------------N 509 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC---------------------------------------C
Confidence 99999999999999876 68999999999999999999 9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHH---HHHH--------HccC
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSI---IGCY--------CKER 809 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l---~~~~--------~~~g 809 (902)
++.|..+++++.+.+|.+..+|..|++.|++.|++++|.++++.|.+.|+.+.+.. ..+ ...+ ....
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999999999899999999999999999999999999999999998654432 000 0000 0112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH
Q 048778 810 KYDDCLEFMNLILESGFVPSFE 831 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~ 831 (902)
-++...++..+|.+.|+.|+..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2456677888888999999864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-42 Score=421.71 Aligned_cols=783 Identities=13% Similarity=0.038 Sum_probs=547.3
Q ss_pred HHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccC--------------ChhhHH
Q 048778 79 ILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSD--------------SKDDIL 144 (902)
Q Consensus 79 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~ 144 (902)
+...++ ++.|+..|.-... .........+..+...+...|.+.+|...+..++...+. .++ +.
T Consensus 100 ~~~~g~-~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~ 176 (899)
T TIGR02917 100 YLLQGK-FQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR-FD 176 (899)
T ss_pred HHHCCC-HHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCC-HH
Confidence 333444 6666666653321 122334455555556666667777776666665543322 112 45
Q ss_pred HHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048778 145 KLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224 (902)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 224 (902)
+|...++.+.+.+ +.+...|..+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 254 (899)
T TIGR02917 177 EARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALL 254 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666665543 3355677777777777788888888887777654 3455667777777777778888877777777
Q ss_pred hCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh
Q 048778 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTR 304 (902)
Q Consensus 225 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 304 (902)
+... .+...+......+.+.|++++|...|+.+.+. .+.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 255 KKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred HhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 6542 23333334444556677777777777777653 12223344455556667777777777777776653 22455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 305 TYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYC 384 (902)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 384 (902)
.+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.++|+++.+... .+...+..+...+.
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 56666677777777777777777776653 23566777777777777777777777777766532 25556666777777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048778 385 KQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464 (902)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 464 (902)
..|++++|.+.++.+.+.... +......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777777665322 23344556667777777777777777776642 3456667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTD 544 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 544 (902)
.|+++.+.. +.+...+..+...+...|++++|...++.+...+ +.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 563 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN- 563 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777776653 3455666667777777777777777777777654 3356677777777777777777777777776653
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
+.+...+..++..+...|++++|..+++.+.+. .+.+...|..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 244556666777777777777777777777653 24456677777777777777777777777777653 4455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +++...+..+...+...|+.
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 777777777777777777777653 4456777777777777777777777777777642 44556666677777777766
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++...+..... ..++...+...+..+.+.|+.++|.+.++++++..|.+..++..++..|...|++++|++.|
T Consensus 720 ~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 720 PAAIQAYRKALK------RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHHHHHHHHHh------hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665555543322 11223455566667777779999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 785 KDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 785 ~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+++.+.. |+... ..+++.+...|+ .+|+.+++++.+. .| +...+..++.++...|++++|..+++++++.++
T Consensus 794 ~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 794 RTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999854 54444 899999999999 8899999999875 44 457778899999999999999999999998876
Q ss_pred CCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 862 IEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
. +..++..++..+.+.|++++|++++++|.+
T Consensus 869 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 869 E-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 5 777888999999999999999999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-41 Score=416.35 Aligned_cols=822 Identities=12% Similarity=0.059 Sum_probs=663.0
Q ss_pred HHHHHHHHHhcCCCCCccc-hhhhhcCCCChH------HHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 048778 43 DTACQVSALLHKPNWQQND-ILKSLVSHMPPH------AASQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNL 115 (902)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~ 115 (902)
.+...-...+.++++.... .+.... ...|. .+..+....++ .+.|+..|+-+.... +++......+..+
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 99 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNAL-QKDPNDAEARFLLGKIYLALGD-YAAAEKELRKALSLG--YPKNQVLPLLARA 99 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC--CChhhhHHHHHHH
Confidence 3455555556666665432 222221 12222 13334444555 999999998886542 2344556667778
Q ss_pred HHhCCCchhHHHHHHHHH---------------HhccCChhhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 048778 116 VVSCNLYGVAHKAIIELI---------------KECSDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFV 180 (902)
Q Consensus 116 l~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 180 (902)
+...|.+..|..++.... ......++ ..+|...|+.+.+.+.. +..++..+...+...|++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ-LELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHH
Confidence 888888887776654322 11112233 67899999988775543 56788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 181 AYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 181 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
|..+++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 5677788888899999999999999999998875 45677888899999999999999999999987
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048778 261 EASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT 340 (902)
Q Consensus 261 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 340 (902)
. .+.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+... .+...
T Consensus 256 ~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 331 (899)
T TIGR02917 256 K--APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQA 331 (899)
T ss_pred h--CCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 4 3334444445555667889999999999999886432 233444556677889999999999999987643 36677
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
+..+...+.+.|++++|...++.+..... .+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+..
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 88889999999999999999999987643 467889999999999999999999999998764 3356778888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048778 421 MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGF 500 (902)
Q Consensus 421 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (902)
.|+.++|...++.+.+... ........++..+.+.|++++|.++++++.... +.+..++..+...+...|++++|...
T Consensus 410 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999987653 234455667888999999999999999998753 56788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 501 FGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLV 580 (902)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (902)
|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|+.++|...++++.+.+ +
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 99998864 3466778888999999999999999999998864 3567788999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++|+..++++.+.. +.+...+..++
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 467788889999999999999999999998764 6678899999999999999999999999999764 55778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
.++.+.|++++|...++++.+. .+.+...+..+...+...|+.+++...+...... .+.+...+...+..+...
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-----HPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCChHHHHHHHHHHHHC
Confidence 9999999999999999999874 2446788899999999999777776665544321 233456677788889999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
|++++|.+.|+++.+..|.+ ..+..++..+.+.|++++|.+.++++++.. |+... ..++..|...|++++|...+
T Consensus 717 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999988666 677889999999999999999999999854 54444 88999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
+++.+.. .++...+..++..+...|+ ++|+.+++++++.... +...+..++..+...|++++|++.++++.+.+..
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999863 4467889999999999999 8899999999877543 4556778889999999999999999999998754
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.1e-28 Score=294.17 Aligned_cols=661 Identities=11% Similarity=0.032 Sum_probs=429.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH----------
Q 048778 166 SCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHIC---------- 235 (902)
Q Consensus 166 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---------- 235 (902)
-..++.....++.+.|.+.+.++.... +.|+..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcC
Confidence 345556677888888888888887654 3466777778888888888888888888888775 2222221
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 048778 236 ------TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTL-IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308 (902)
Q Consensus 236 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 308 (902)
..+...+.+.|++++|.+.|+...+ +.+|+...-... .......|+.++|++.++++.+.... +...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2223356666777777777777665 333433211111 11112346677777777776665321 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 048778 309 LIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPG-VVTYNVLINGYCKQG 387 (902)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 387 (902)
+...+...|+.++|++.++++..... . +...+...++.+...+..++ ...+...+..+-...
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 66666666777777777776654311 0 00111111111111111111 111222222222223
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048778 388 RIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFN 467 (902)
Q Consensus 388 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 467 (902)
..+.|...+..+......|+... ......+...|++++|...|++.++... .+...+..+...+.+.|++++|...|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455566655544322333222 2334556677888888888888877532 366777778888888888888888888
Q ss_pred HHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 468 SMSIFGLVP-DGFTF------------TSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALM 534 (902)
Q Consensus 468 ~m~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 534 (902)
+..+..... ....| ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 877653211 11111 122345678888999999998888874 3356677778888888899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048778 535 IFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL--------VPSVVTYTILVDGLFRAGNIALAMSMI 606 (902)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (902)
.|+++.+... .+...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|
T Consensus 407 ~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 407 YYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9988887532 34455666666664 4577888888766432110 001224556677888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048778 607 EVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL 686 (902)
Q Consensus 607 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 686 (902)
++.++.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......+
T Consensus 485 ~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 485 RQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 9998864 4456677888899999999999999999998753 4456666666666778899999999988765332222
Q ss_pred CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 048778 687 NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNF 766 (902)
Q Consensus 687 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 766 (902)
+......-+. ...+...+..+...|+.++|.++++ ..|.++..+..
T Consensus 563 ~~~~l~~~l~------------------------------~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~ 608 (1157)
T PRK11447 563 NIQELAQRLQ------------------------------SDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLT 608 (1157)
T ss_pred hHHHHHHHHh------------------------------hhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHH
Confidence 2211100000 0001112223334459999998877 45888888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSE 843 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~ 843 (902)
++..+.+.|++++|++.|+++++ ..|+... ..++.+|...|++++|.+.++.+.+. .| +...+..++.++...
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhC
Confidence 99999999999999999999998 4566555 88999999999999999999988764 44 346677788899999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----cchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 844 GRNKQAKNLVSDLFRYNGIE-----EKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
|++++|.++++++++..... +...+..+...+...|++++|++.++....
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999987654322 123555667888899999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-27 Score=291.45 Aligned_cols=641 Identities=12% Similarity=0.023 Sum_probs=446.7
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----------------HHHHHH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDY----------------RSVINA 206 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----------------~~ll~~ 206 (902)
.+.|.+.+.++...... +...+..++..+.+.|+.++|...+++..+.. +.+.... ......
T Consensus 44 ~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 44 EDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred hHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 45688888888776543 67788889999999999999999999999876 2232221 223346
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChh
Q 048778 207 LCKSGLVRAGEMFFCRVLKHGFCLDTHI-CTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLD 285 (902)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (902)
+.+.|++++|.+.|+.+.+.+ +++... ...+.......|+.++|++.|+++.+ ..+.+...+..+...+...|+.+
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHccCCHH
Confidence 788999999999999999764 333321 11122223346999999999999998 44556778889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN-AHTYTVLIDRLCREGKIDEANGMCGKM 364 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 364 (902)
+|++.++++..... . +...+...++.+...+..+. ...+...+..+-.....+.|...+.+.
T Consensus 199 eAl~~l~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 199 EGFAVLEQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 99999999876421 1 01111112222222221111 122222222222223344555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h
Q 048778 365 LQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-E 443 (902)
Q Consensus 365 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~ 443 (902)
......|+... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+...... .
T Consensus 262 ~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 262 QKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 44322233221 223455566777777777777776653 22566677777777777777777777777766432211 1
Q ss_pred hhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 444 ITY------------NILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISP 511 (902)
Q Consensus 444 ~~~------------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 511 (902)
..+ ......+.+.|++++|...|+++.... +.+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 111 122345667888888888888887764 3456677778888888888888888888888763 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 512 DEATITALADGHCKNGKTGEALMIFERMVQNTD--------LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
+...+..+...|. .++.++|..+++.+..... ......+..+...+...|++++|...|++.++.. +-+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 4556666666664 4567888877765433210 0112235556777888999999999999988753 2256
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------H
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH---------I 654 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~ 654 (902)
..+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 677788889999999999999999988753 445555555566677889999999988876533222222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+..+...+...|++++|..+++. .+.+...+..+...+.+.|
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g-------------------------------- 617 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG-------------------------------- 617 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC--------------------------------
Confidence 233556778899999999999872 3456667777888888888
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
+.++|+..|+++++..|.++.++..++..|...|++++|++.++++.+ ..|+... ..++.++...|+++
T Consensus 618 -------~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 618 -------DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999987 4455544 77899999999999
Q ss_pred HHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 813 DCLEFMNLILESGF--VP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 813 ~A~~~~~~~~~~~~--~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
+|.++++++.+... .| +...+..++.++...|+.++|+..|++++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999986421 12 124566778899999999999999999864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.9e-24 Score=250.80 Aligned_cols=607 Identities=11% Similarity=0.014 Sum_probs=346.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 048778 174 KLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFK 253 (902)
Q Consensus 174 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (902)
..|++++|+..|+...+.. +-+..++..+...|.+.|+.++|+...++.++.. +-|...+..+ ..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHH
Confidence 3477778888888777665 2335667777777778888888888877777663 2233333333 222 77777778
Q ss_pred HHHHhhhcCCCCCCHhhHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH-HHHHHhcCChHHHHH
Q 048778 254 VFDVMSKEASYRPNSVTFTTLIHG--------LCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL-IKALCDISLTDKALS 324 (902)
Q Consensus 254 ~~~~m~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~ 324 (902)
+++++... .+-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 88777763 33334444444443 4444 44444444 3333334445444444 677777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 048778 325 LFDEMVVKRCKPNAHTYTVLIDRLCR-EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRT 403 (902)
Q Consensus 325 ~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 403 (902)
.++++.+.+.. +..-...|...|.. .++ +++..++... +.-+...+..+...|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 88887777533 44445566666666 355 6666665432 22467777777777788888888877777765432
Q ss_pred CC-CCHHHHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048778 404 CK-PNIRTYNE------------------------------LMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDG 452 (902)
Q Consensus 404 ~~-p~~~t~~~------------------------------li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 452 (902)
.. |...++.- ++..+.+.+.++.+.++.. +.|.... ..++.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHH
Confidence 21 33333322 2334444455554433311 2222221 12221
Q ss_pred H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC
Q 048778 453 F--CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK-G-ISPDEATITALADGHCKNGK 528 (902)
Q Consensus 453 ~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~ 528 (902)
. ...+...++.+.+..|-+.. +-+......+.-...+.|+.++|..++...... + -.++......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 1 12355555555565555432 224444444444556677777777777766552 1 12233344466666666554
Q ss_pred ---HHHHHHH----------------------HHHHHhC-C-CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 529 ---TGEALMI----------------------FERMVQN-T-DLK--TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579 (902)
Q Consensus 529 ---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (902)
..++..+ ++..... + .++ +...+..+..++.. ++.++|...+.+....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-- 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-- 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence 2222222 1111110 0 112 44455555555554 5666677666665543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659 (902)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 659 (902)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L 582 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL 582 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 244433333344445667777777777766543 3444445555666666777777777777766543 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
.....+.|++++|...+++.++ ..|+...+..+...+.+.|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG------------------------------------- 623 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH------------------------------------- 623 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC-------------------------------------
Confidence 3344455777777777777765 3455666666666666666
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~ 817 (902)
+.++|...++++++.+|.++..++.++..+...|++++|++.++++++ ..|+... ..++.++...|++++|...
T Consensus 624 --~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 624 --NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777766 3454444 6777777777777777777
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 818 MNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 818 ~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++++++. .|+. .+....+..+.+..+++.|.+-+++...
T Consensus 700 l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 700 ARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 7777653 4544 4445555666666666666666666533
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.5e-22 Score=235.13 Aligned_cols=608 Identities=10% Similarity=-0.013 Sum_probs=431.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048778 209 KSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAF 288 (902)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 288 (902)
..|++++|...|++.++.. +-+..++..|...|.+.|+.++|+..+++..+ ..+-|...+..+ ..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH-HHh---ccChhHH
Confidence 4499999999999999886 33478889999999999999999999999997 333344444444 333 9999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHH--------HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHhHHHH
Q 048778 289 SLKDEMCEKGWQPSTRTYTVLIKA--------LCDISLTDKALSLFDEMVVKRCKPNAHTYTVL-IDRLCREGKIDEANG 359 (902)
Q Consensus 289 ~~~~~m~~~g~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 359 (902)
..++++...... +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|.+
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999987432 23444444443 5555 55555555 4433344445545554 899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 360 MCGKMLQDGHFPGVVTYNVLINGYCK-QGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG 438 (902)
Q Consensus 360 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g 438 (902)
++.++.+.+.. +..-...|...|.. .++ +++..+++. .++-+...+..+...+.+.|+.++|..+++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999998654 45557777778887 466 777777553 233588889999999999999999999999875421
Q ss_pred CC-CChhhHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048778 439 LF-PDEITYNI------------------------------LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDG 487 (902)
Q Consensus 439 ~~-~~~~~~~~------------------------------ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (902)
.. |...++-- ++..+.+.++++.+.++.. +.|..... .+..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHH
Confidence 11 22222111 2444555566665554421 22332221 2222
Q ss_pred --HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC
Q 048778 488 --LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQN-T-DLKTPHVLNSFLDVLCKENK 563 (902)
Q Consensus 488 --~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~ 563 (902)
....+...++...+..|.+.. +-+.....-+.-...+.|+.++|..+|+..... + ...+......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 223356666777777776652 224444444445566889999999999988763 1 22344455577787777765
Q ss_pred ---hhHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048778 564 ---LKEEYAM----------------------FGKILK-FGL-VP--SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC 614 (902)
Q Consensus 564 ---~~~A~~~----------------------~~~~~~-~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 614 (902)
..++..+ +..... .+. ++ +...|..+..++.. ++.++|+..+.+....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-- 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-- 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence 3333222 111111 111 33 56777778877776 7888899988888775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSA 693 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ 693 (902)
.|+......+...+...|++++|+..++++... +|+...+..+..++.+.|++++|..++++.++. .|+ ...+..
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 466555445556667899999999999988654 455566777788889999999999999999874 343 333333
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
+...+...| ++++|...++++++.+|. ...|..++..+.+
T Consensus 582 La~~l~~~G---------------------------------------r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 582 LHAQRYIPG---------------------------------------QPELALNDLTRSLNIAPS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHhCC---------------------------------------CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 333344446 999999999999999885 8899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~ 850 (902)
.|++++|+..++++++ ..|+... ..++.++...|++++|+..++++++. .| +...+..++.++...|++++|+
T Consensus 622 lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 622 RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 5577666 88999999999999999999999985 56 4588899999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 851 NLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
..++++++..+. ...+....+....+..+++.+.+.+++...-.
T Consensus 698 ~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 698 HYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999777643 23455566777777788888888777655443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.2e-22 Score=213.79 Aligned_cols=694 Identities=13% Similarity=0.070 Sum_probs=486.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH-hc-----------CChHHHHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIAD------GFVLSAIDYRSVINALC-KS-----------GLVRAGEMFFCRV 223 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~~~~~~~~~~ll~~~~-~~-----------~~~~~a~~~~~~~ 223 (902)
..+|..+...|.+.|+.++.+.+++.-.-. ++..+...-...+.+|. .. .-+..|..+|..+
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 458999999999999999999999886622 11112221112222222 11 1123444555544
Q ss_pred HhCCCCcCHH-HHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--C
Q 048778 224 LKHGFCLDTH-ICTSLVLGHCRGN--DLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEK--G 298 (902)
Q Consensus 224 ~~~g~~~~~~-~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g 298 (902)
-+.....++. ++... .|...| +++.|.+.|....+ .-++|+-..-.-.......|++..|+.+|...... .
T Consensus 121 ~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 4332222221 11111 122233 36999999999987 44567666655555566789999999999996654 4
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHCCCCCCHHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCRE---GKIDEANGMCGKMLQDGHFPGVVT 375 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~ 375 (902)
..||+. -.+..++.+.|+.+.|+..|....+.++ .++.++..|...-... ..+..+..++...-.... -+++.
T Consensus 197 ~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~ 272 (1018)
T KOG2002|consen 197 CKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVA 272 (1018)
T ss_pred cCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHH
Confidence 455543 2233566799999999999999998743 2333333333222222 335566666666655432 37788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048778 376 YNVLINGYCKQGRIIAAFELLALMEKRTCK--PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGF 453 (902)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 453 (902)
.+.|.+.|.-.|++..++.+...+...... .-...|--+.+++...|++++|...+.+........-+..+.-+...+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 889999999999999999999988876321 123457788999999999999999999887753322234455678899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 454 CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLG----KPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529 (902)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 529 (902)
.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++....+.- +.|...|..+...+....-+
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH
Confidence 99999999999999998863 445667777777777664 5677777777777653 44777888877777655444
Q ss_pred HHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHc
Q 048778 530 GEALMIFERMV----QNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF---GLVPSV------VTYTILVDGLFRA 596 (902)
Q Consensus 530 ~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~ 596 (902)
.. +.+|.... ..+..+.+...|.+...+...|++++|...|...... ...+|. .+--.+...+-..
T Consensus 431 ~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 AS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 43 76666543 4455688899999999999999999999999988754 122222 2223345566677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 597 GNIALAMSMIEVMKLAGCPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
++.+.|.+.|...... .|+-+ .|..+.......+...+|..++....... ..++..++.+++.|.+...+..|.+-
T Consensus 510 ~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccH
Confidence 8999999999999986 45544 45555534445578899999999998764 66777888888899999999999887
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 676 VSFMVANG-CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 676 ~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
|....+.. ..+|....-+|.+.|...-.. ...+..-..+..+.|+++|.+++
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~---------------------------~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHN---------------------------PSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcc---------------------------cccChHHHHHHHHHHHHHHHHHH
Confidence 77766542 236777777888766554310 00111222348899999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES-GFVPSFESH 833 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 833 (902)
..+|.|..+-+.++-.++..|++.+|..+|.+..+....-.++..+++++|..+|+|..|+++|+...+. ....+.+..
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 9999999999999999999999999999999999865322223388999999999999999999999854 333467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH-------------------hcCCcHhHHHHHHHHHHhc
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL-------------------LTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g~~~~a~~~l~~~~~~ 894 (902)
..|++++.+.|.+.+|.+.+..+....+. ++...+.++..+ ...+..++|.++|..|...
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998665443 222333333222 1245667788888888877
Q ss_pred Ccc
Q 048778 895 HYR 897 (902)
Q Consensus 895 ~~~ 897 (902)
+-+
T Consensus 799 ~d~ 801 (1018)
T KOG2002|consen 799 GDK 801 (1018)
T ss_pred CCC
Confidence 755
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-20 Score=203.63 Aligned_cols=640 Identities=13% Similarity=0.044 Sum_probs=446.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCcC-HHHHHHHHHHHhccC-----------CHHHHHHHHHHh
Q 048778 197 AIDYRSVINALCKSGLVRAGEMFFCRVLKHG------FCLD-THICTSLVLGHCRGN-----------DLKEAFKVFDVM 258 (902)
Q Consensus 197 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m 258 (902)
..+|..+...|++.|+.++...+++...... ...+ ...++.+..-|...+ .+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 3578888899999999999999998776211 1111 112233333332221 223455555544
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCcCHhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC-
Q 048778 259 SKEASYRPNSVTFTTLIHGLCEVGR--LDEAFSLKDEMCEKGWQPSTRTYTVLIKAL--CDISLTDKALSLFDEMVVKR- 333 (902)
Q Consensus 259 ~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~- 333 (902)
..- .--....+..--..|...|. ++.|...|....+.. +++... .+..++ ...+++..|+.+|......+
T Consensus 121 ~ki--~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp 195 (1018)
T KOG2002|consen 121 DKI--DMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILA--LLGKARIAYNKKDYRGALKYYKKALRINP 195 (1018)
T ss_pred HHh--hccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCc
Confidence 331 00111111111112333443 589999999888763 223322 233443 36789999999999977653
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHH
Q 048778 334 -CKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ---GRIIAAFELLALMEKRTCKPNIR 409 (902)
Q Consensus 334 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~ 409 (902)
+.||+ ...+..++.+.|+.+.|...|.+.++.++ .++.++-.|...-... ..+..+..++...-... .-|++
T Consensus 196 ~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~ 271 (1018)
T KOG2002|consen 196 ACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPV 271 (1018)
T ss_pred ccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcH
Confidence 44454 33444677899999999999999998632 1222222222222222 33555666666654432 34777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 048778 410 TYNELMEGLCRMNKSYKAVHLLKRVVDGGLF--PDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG--FTFTSII 485 (902)
Q Consensus 410 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li 485 (902)
..+.|...+...|++..+..+...+...... .-...|..+.++|-..|++++|...|.+..+.. ++. ..+.-+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchh
Confidence 8888999999999999999999998875321 122357778999999999999999998888764 443 4455678
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048778 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNG----KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKE 561 (902)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (902)
..+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+-..
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 89999999999999999999873 446778888888887765 5677777777777643 35666676666666554
Q ss_pred CChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHH
Q 048778 562 NKLKEEYAMFGKIL----KFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA---GCP------PNVHTYTVIINGL 628 (902)
Q Consensus 562 g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~ 628 (902)
.- ..++..|..+. ..+..+.....|.+...+...|++..|...|+..... ... ++..+-..+...+
T Consensus 428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44 44477776654 3455678889999999999999999999999988764 112 3333445566777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCc
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 707 (902)
-..++++.|.+.|..++.. .|. +..|..++-.....+...+|..+++...+. ...++..+..+...+.+..
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~----- 578 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKS----- 578 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhh-----
Confidence 7788999999999999976 354 445555553334458889999999999873 4556667776776776666
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhc-----------
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRA----------- 774 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------- 774 (902)
.+..|.+-|+...+.- -+|+-+...|++.|.+.
T Consensus 579 ----------------------------------~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 579 ----------------------------------EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred ----------------------------------hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 5555666555554443 35677777888866533
Q ss_pred -CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 775 -GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 775 -g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
+..++|+++|.++++ ..|.+.+ +.++-++...|++++|..+|.+..+.. .....+|..++++|..+|++..|++
T Consensus 625 kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHH
Confidence 567899999999998 5677777 999999999999999999999999763 3455789999999999999999999
Q ss_pred HHHHHHhCCC-CCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 852 LVSDLFRYNG-IEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 852 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+|+..++.-. ..+..+...|..++++.|.+.+|.+.+......-
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999987755 3345567778899999999999999887765543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.6e-23 Score=209.99 Aligned_cols=441 Identities=15% Similarity=0.091 Sum_probs=324.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048778 378 VLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREG 457 (902)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 457 (902)
.|..-..+.|++++|++.-...-..+ +.+....-.+-..+.+..+.+....--....+.. ..-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444455566666655544433321 1111222222233444444444433322222221 123456777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048778 458 QLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEA-TITALADGHCKNGKTGEALMIF 536 (902)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 536 (902)
++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+.. ..+-+....-..|+..+|...+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888888777654 335667777788888888888888888777765 34333 2233444555577888888777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048778 537 ERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCP 615 (902)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 615 (902)
.+.++... .=.+.|+.|...+-..|+.-.|+..|++..+ +.|+ ...|-.|...|...+.++.|+..|.+..... +
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 77766422 2245677788888888888888888888876 4455 5678888888999999999999999888752 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSA 693 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 693 (902)
...+.+..+...|..+|..+-|+..+++.++. .|+ ...|+.|..++-..|++.+|...|.+.+. +.| .....+.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 34567888888899999999999999999885 455 78899999999999999999999999987 345 4567788
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
|...+...| .+++|..+|.++++..|.-..+++.|+..|.+
T Consensus 360 Lgni~~E~~---------------------------------------~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 360 LGNIYREQG---------------------------------------KIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHHHHHhc---------------------------------------cchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 888888888 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~ 850 (902)
+|++++|+..|++++. ++|.-.. +.++..|...|+.+.|++.+.+++.. .|.. +.++.|+.+|...|+..+|+
T Consensus 401 qgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred cccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHH
Confidence 9999999999999998 8887766 89999999999999999999999884 6765 88889999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 851 NLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
.-|+.+++..+.. +..+..++.++
T Consensus 477 ~sY~~aLklkPDf-pdA~cNllh~l 500 (966)
T KOG4626|consen 477 QSYRTALKLKPDF-PDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHccCCCC-chhhhHHHHHH
Confidence 9999998776443 33444555443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5.8e-22 Score=202.09 Aligned_cols=459 Identities=15% Similarity=0.152 Sum_probs=359.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
...|.+-..+.|++.+|++.....-..+.. +....-.+-.++.+..+.+....--....+.. +--..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666677788888888876665544321 22222233345566666666554433333332 2345678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 048778 421 MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF-TSIIDGLCKLGKPELANG 499 (902)
Q Consensus 421 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~ 499 (902)
.|++++|+.+++.+++... ..+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8999999999988887533 35677888888899999999999999888875 4555443 445555666899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 500 FFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKT-PHVLNSFLDVLCKENKLKEEYAMFGKILKFG 578 (902)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 578 (902)
.+.+.++... --.+.|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|-..+.+++|...+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9988887632 24567888888999999999999999998874 333 457888899999999999999999988763
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 579 LVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN-VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 579 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
.|+ ...+..+...|..+|.++.|+..|++.++. .|+ ...|+.|..++-..|++.+|...+.+.+... +......
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 454 667777888899999999999999999986 455 4689999999999999999999999999864 4447788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
+.|...|...|++++|..+|....+ +.|. ....+.|...|.++|
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg--------------------------------- 402 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG--------------------------------- 402 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc---------------------------------
Confidence 9999999999999999999999987 5665 457788888898888
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
++++|+..|++++...|.-..+|+.++..|...|+.+.|+..|.+++. +.|.-.. +.|+..|...|++.+
T Consensus 403 ------nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 403 ------NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred ------cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 999999999999999999999999999999999999999999999998 6676655 999999999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSF-ESHCTVIQGLQSEG-------RNKQAKNLVSDLF 857 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g-------~~~~A~~~~~~~~ 857 (902)
|++-++..++ ++||. +.|..+++++.--. +.++-.++.++-+
T Consensus 475 AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 9999999988 47875 77877777663322 2345555555544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.8e-18 Score=198.70 Aligned_cols=256 Identities=14% Similarity=0.058 Sum_probs=208.1
Q ss_pred cCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFG-LVP-SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
.+.+++|...|+...+.+ ..| ....|+.+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888999998888754 223 45668888888889999999999999998863 334568888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
..++++++.. +.+...|..+...+...|++++|...+++.++. .| +...+..+...+.+.|
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g--------------- 447 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG--------------- 447 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC---------------
Confidence 9999998764 556888999999999999999999999999874 45 4566777777787888
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...|+++++..|.++..++.++..+...|++++|++.|+++++.....+..
T Consensus 448 ------------------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 448 ------------------------SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred ------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999998843221111
Q ss_pred H-------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 798 I-------TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 798 ~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
. ......+...|++++|.++++++++. .|+. ..+..++.++...|++++|+.+++++++...
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 1 11122344579999999999999875 4654 5788899999999999999999999877654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.1e-18 Score=198.24 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=209.8
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 595 RAGNIALAMSMIEVMKLAG-CPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
..+++++|.+.|++..+.+ ..| +...|..+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3478999999999999864 233 44678888888999999999999999999863 33467888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
...++++++. -+.+..+|..+...+...| ++++|...|++
T Consensus 385 ~~~~~~al~~-~p~~~~~~~~lg~~~~~~g---------------------------------------~~~~A~~~~~k 424 (615)
T TIGR00990 385 EEDFDKALKL-NSEDPDIYYHRAQLHFIKG---------------------------------------EFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHH
Confidence 9999999874 2335778888888888888 99999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+++.+|.+...+..++..+.+.|++++|+..|+++++ ..|+... ..++.++...|++++|+..++++++. .|+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 9999999999999999999999999999999999998 4465444 88999999999999999999999874 3321
Q ss_pred -H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 831 -E-------SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 831 -~-------~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
. .+......+...|++++|+.+++++++..+. +...+..++..+...|++++|++.+++..+..
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1 1111222333469999999999999877643 34467788999999999999999999886653
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.7e-20 Score=200.24 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=224.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 048778 556 DVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN---VHTYTVIINGLCQRG 632 (902)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g 632 (902)
..+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777888888777643 23455777777888888888888888888776432221 245677788888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCcCCcc
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS----NVYSALLAGLVSSNKASGVL 708 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~~~ 708 (902)
++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------ 194 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG------ 194 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC------
Confidence 8888888888887653 456777888888888888888888888888765322221 13344555566666
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++++|.+.++++++..|.+..++..++..|.+.|++++|++.++++.
T Consensus 195 ---------------------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 195 ---------------------------------DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ---------------------------------CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999888888888888888889999999999999999988
Q ss_pred HcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 789 KSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 789 ~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
+.+....... ..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++++. .|+...
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~ 317 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG 317 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH
Confidence 7432221223 77888888999999999999988875 566666678888888999999999999888665 456666
Q ss_pred HHHHHHHHhc---CCcHhHHHHHHHHHHhcCcccCCC
Q 048778 868 VLPYIEFLLT---GDELGKSIDLLNLIDQVHYRQRPV 901 (902)
Q Consensus 868 ~~~l~~~~~~---~g~~~~a~~~l~~~~~~~~~~~~~ 901 (902)
+..++..+.. .|+.++++.++++|.++++++.|+
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666666554 568888999999999888888775
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=7.1e-18 Score=192.67 Aligned_cols=331 Identities=15% Similarity=0.070 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 411 YNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK 490 (902)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (902)
...++..+.+.|++++|..+++........+ ...+..++.+....|++++|...++++.... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4445566666777777777777766654433 3333334455556677777777777766653 3345556666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048778 491 LGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAM 570 (902)
Q Consensus 491 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (902)
.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 666666666666666542 224555556666666666666666666655443221 12222222 234555666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 048778 571 FGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE----AEMLLFKMFD 646 (902)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 646 (902)
++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6655543222233333334445555556666666655555542 3344455555555555555553 4555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 647 LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 647 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. +.+...+..+...+.+.|++++|...+++..+. .| +...+..+...+.+.|
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G----------------------- 332 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG----------------------- 332 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-----------------------
Confidence 32 233445555555555555555555555555542 23 2334444444454544
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...|+++.+.+|.+...+..++.++...|++++|+..|+++.+
T Consensus 333 ----------------~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 333 ----------------QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred ----------------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555554444444445555555555555555555555
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=5.9e-19 Score=192.79 Aligned_cols=302 Identities=12% Similarity=0.019 Sum_probs=168.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHhcc
Q 048778 169 LMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLD---THICTSLVLGHCRG 245 (902)
Q Consensus 169 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 245 (902)
...+...|++++|+..|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567788888888888888764 33455677777778888888888888887776532221 24566677777777
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----hhHHHHHHHHHhcCChHH
Q 048778 246 NDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPST----RTYTVLIKALCDISLTDK 321 (902)
Q Consensus 246 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 321 (902)
|++++|..+|+++.+ ..+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777765 23345667777777777777777777777777665433221 123334444455555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048778 322 ALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEK 401 (902)
Q Consensus 322 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (902)
|.+.|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|++.|++++|.+.++.+.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555432 1123344444455555555555555555554432211123344444444444444444444444443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048778 402 RTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF 481 (902)
Q Consensus 402 ~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (902)
. . |+...+..++..+.+.|++++|..+++++.+. .|+..++
T Consensus 278 ~--~-----------------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~ 318 (389)
T PRK11788 278 E--Y-----------------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGF 318 (389)
T ss_pred h--C-----------------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHH
Confidence 3 1 33333344455555555555555555554443 3455555
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 048778 482 TSIIDGLCK---LGKPELANGFFGLMVKKGISPDE 513 (902)
Q Consensus 482 ~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 513 (902)
+.++..++. .|+.++++.++++|.++++.|++
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 555544443 33455555555555554444433
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=9.8e-15 Score=157.43 Aligned_cols=625 Identities=12% Similarity=0.055 Sum_probs=276.7
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCR 222 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 222 (902)
+.+|..++.++.+.... +...|.+|...|-..|+.+.+...+-.+-... +-|...|..+.....+.|.+++|.-.|.+
T Consensus 155 ~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44455555554443322 34455555555555555555555544444333 22334455555555555555555555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHh-----hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV-----TFTTLIHGLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 223 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 297 (902)
+++.. +++....---+..|-+.|+...|.+-|.++... ++|... +--.+++.+...++-+.|.+.++.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 55443 222222223344445555555555555555442 111111 1112233333444444555544444432
Q ss_pred -CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH--HCCCCCCHH
Q 048778 298 -GWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML--QDGHFPGVV 374 (902)
Q Consensus 298 -g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~~~~~ 374 (902)
+-..+..++++++..+.+...++.|......+..+..++|..-+.+- +.-..-+.-.. ..+..++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccch
Confidence 11223334444444455555555554444444432111111111000 00000000000 001111211
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRT--CKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDG 452 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 452 (902)
.. -+.-++......+...-+.....+.. +.-+...|..+..++...|++.+|+.+|..+.......+...|-.+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 10 11112222222222222333333333 2234445666666677777777777777766665444455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 048778 453 FCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVK--------KGISPDEATITALADGHC 524 (902)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~ 524 (902)
|...|.++.|.+.|+..+... +.+..+-.+|...+-+.|+.++|.+.+..+.. .+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 767777777777776666543 33444555566666667777777666666431 223344444444555566
Q ss_pred hcCCHHHHHHHHHHHHhCC----------------------CCCChhhHHHHHHHHHhcCChhHHHHH------HHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNT----------------------DLKTPHVLNSFLDVLCKENKLKEEYAM------FGKILK 576 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~ 576 (902)
+.|+.++-......|+... ..-.......++.+-.+.++......- +.....
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 6666665444433333210 111111122222222222221111110 000111
Q ss_pred CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 048778 577 FGLVPSV--VTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVH----TYTVIINGLCQRGRFKEAEMLLFKMFDL-G 648 (902)
Q Consensus 577 ~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 648 (902)
.|+.-+. ..+.-++.++++.+++++|+.+...+..... .-+.. .-...+.+.+..+++..|...++.|... +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1222111 2334455566677777777777666655321 11111 1233445556666777777777666632 1
Q ss_pred CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 649 VS--P-NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 649 ~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. | -...|+...+.+.+.|+-.--.+++..+. .+..+...
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~------------------~~~~~~~~------------------- 740 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL------------------VKNKDDTP------------------- 740 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------ccCccCCc-------------------
Confidence 11 1 12233333333333332222222222211 11110000
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCc-
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG----------RIVEADRIMKDIMKSGVFP- 794 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p- 794 (902)
..+...+..+..++.+..|...|-.+...+|.+|..-..++.++...- ..-.++..+++..+.....
T Consensus 741 --~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~ 818 (895)
T KOG2076|consen 741 --PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEE 818 (895)
T ss_pred --ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHH
Confidence 111112233445568899999999988888888877776666654332 1223334443333321111
Q ss_pred hHhH-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 795 AKAI-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 795 ~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.... .+++.+|-..|-..-|..++++.++
T Consensus 819 ~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 819 KQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 1122 6666666666666666666666664
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=6.1e-15 Score=158.99 Aligned_cols=633 Identities=12% Similarity=0.079 Sum_probs=370.2
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-..-. -.+.|...|..+.....+.|+++.|.-+
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 55555555555555443 33344455555555555555555544433332 2333444555555555555555555555
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048778 291 KDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT----YTVLIDRLCREGKIDEANGMCGKMLQ 366 (902)
Q Consensus 291 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~ 366 (902)
|.+.++... ++...+---...|-+.|+...|.+-|.++.....+.|..- --..++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 555544321 1112222223334445555555555555554432112111 11223344444444555555555444
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---------------------------CCCCCHHHHHHHHHHH
Q 048778 367 DG-HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR---------------------------TCKPNIRTYNELMEGL 418 (902)
Q Consensus 367 ~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~~~p~~~t~~~li~~~ 418 (902)
.+ -.-+...++.++..|.+...++.|......+... ++.++... .-++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 11 1123334555555555555555555555544431 12222222 1233344
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 419 CRMNKSYKAVHLLKRVVDGG--LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
......+....+.....+.. +.-+...|.-+.++|...|.+.+|+.+|..+......-+...|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555555666666655 4446678888999999999999999999999987666678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHhcCChhHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ--------NTDLKTPHVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (902)
|.+.|...+... +-+...-.+|...+.+.|+.++|.+.++.+.. .+..|+........+.+.+.|+.++=.
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999873 23556667778889999999999999998653 123344445555667788888888766
Q ss_pred HHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHCCCCCCH--
Q 048778 569 AMFGKILKFG-----L-----------------VPSVVTYTILVDGLFRAGNIALAMSMI------EVMKLAGCPPNV-- 618 (902)
Q Consensus 569 ~~~~~~~~~~-----~-----------------~p~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~~~~p~~-- 618 (902)
.+-..|+... + .....+.-..+.+-.+.++.....+-. .--...|+..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5555554311 1 111111222233333333321111111 111112222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--CC-CHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SPNH----ITYSILVRAHASTGRLDHAFKIVSFMVAN-GC--QL-NSN 689 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~--~~-~~~ 689 (902)
..+.-++.++++.+++++|..+...+....+ ..+. ..-...+.+.+..+++..|...++.|+.. +. .| -..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2456678889999999999999988875421 1122 23345566778899999999999999864 11 22 123
Q ss_pred HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q 048778 690 VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST-TDFYNFLV 768 (902)
Q Consensus 690 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 768 (902)
.|+...+...+.+ +----.+.+..+....+.+ +......+
T Consensus 707 l~n~~~s~~~~~~---------------------------------------q~v~~~R~~~~~~~~~~~~~~~l~~i~g 747 (895)
T KOG2076|consen 707 LWNLDFSYFSKYG---------------------------------------QRVCYLRLIMRLLVKNKDDTPPLALIYG 747 (895)
T ss_pred HHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHhccCccCCcceeeeec
Confidence 4554444444444 3333334444455555444 55555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc----------CChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE----------RKYDDCLEFMNLILESGFVP-SFESHCT 835 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 835 (902)
......+.+.-|+..|-.+.. ..|+... ..++-++.+. -.+-++..++.+..+....- .-+++..
T Consensus 748 h~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN 825 (895)
T KOG2076|consen 748 HNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN 825 (895)
T ss_pred hhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 777888999999999999988 4566444 3344333321 13566777777777543221 3478888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-------c----chhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRYNGIE-------E----KAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~~~~~-------~----~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
++++|...|-.--|+.+|++++..++.+ + ..+-+.|.-.|.+.|+..-|.++++.
T Consensus 826 igRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 826 IGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999999999999998775221 1 22234555668899999999988863
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=5.7e-14 Score=145.37 Aligned_cols=603 Identities=10% Similarity=0.025 Sum_probs=355.7
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
++...|+.++....+.+ +.++..|.+-.+.--..|++..|..+..+-.+ .++.+...|---| +....+.|..+
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe--~cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCE--ECPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh--hCCchHHHHHHHH----hcCChHHHHHH
Confidence 56778888888887765 33445555555555667788888887776665 5666666665443 34445556555
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 291 KDEMCEKGWQPS-TRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 291 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
.....+. -|+ +..|. .+---..+...=.++++..++. ++.++..|... ......+.|..++.+..+. +
T Consensus 338 vA~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-c 406 (913)
T KOG0495|consen 338 VANAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-C 406 (913)
T ss_pred HHHHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-c
Confidence 5555543 222 22221 1111122233334555555554 23244444333 3345556677777777664 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhh
Q 048778 370 FPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV----DGGLFPDEIT 445 (902)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~ 445 (902)
+.+...|. +|.+..-++.|.++++...+. ++-+...|.+....--.+|+.+...+++.+.+ ..|+..+...
T Consensus 407 p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 407 PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 22333333 344555667777777777664 45566666666666666777777666665543 3566667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 446 YNILVDGFCREGQLDIALKIFNSMSIFGLVP--DGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGH 523 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 523 (902)
|-.=...+-..|..--+..+....+.-|+.. -..||..-...|.+.+.++-|..+|...++. ++.+...|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 7666666777777777777777766665432 2356777777777777777777777777665 334566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 524 CKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
-..|..++-..+|++.... ++.....|-....-+-..|++..|..++....+... .+...|-.-+.......+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHH
Confidence 6677777777777777664 334445555555666667777777777777776532 25666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 604 SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN 682 (902)
Q Consensus 604 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 682 (902)
.+|.+.... .|....|.--++...-.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|.+.|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 777777653 566666666666666677777777777777764 344 456666777777777777777777665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH
Q 048778 683 GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762 (902)
Q Consensus 683 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 762 (902)
++-....|-.|...--+.| .+-.|..++++..-++|.+..
T Consensus 715 -cP~~ipLWllLakleEk~~---------------------------------------~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDG---------------------------------------QLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred -CCCCchHHHHHHHHHHHhc---------------------------------------chhhHHHHHHHHHhcCCCcch
Confidence 2223345545544444444 666666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGL 840 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l 840 (902)
.|...+..=.+.|+.+.|..+..++++.. |+... .--++..-+-++-..+.+.+++ .+-|+.....++..+
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lf 827 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLF 827 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHH
Confidence 66666666666666666666666666533 32222 2223333333332222222222 244445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
....++++|.+.|.++++.+.. ...+|.-+....+..|.-++-.++++.-
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5566666666666666555433 2334444444455555555555555443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.2e-17 Score=184.98 Aligned_cols=382 Identities=10% Similarity=0.022 Sum_probs=295.5
Q ss_pred HHHcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 348 LCREGKIDEANGMCGKMLQD--GHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY 425 (902)
Q Consensus 348 ~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 425 (902)
+.+..+++.-.-+|....++ .-.-+......++..+.+.|++++|+.+++........ +...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 55667777666666554432 01112333445677788999999999999999877533 3444555566777899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 426 KAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMV 505 (902)
Q Consensus 426 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 505 (902)
+|...++++.+..+ .+...+..+...+.+.|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999998643 456678888889999999999999999998763 4567788889999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 506 KKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 506 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++++.... +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76433 33344333 3478899999999999998876443445555566788899999999999999998754 345778
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 586 YTILVDGLFRAGNIAL----AMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8889999999999986 899999998864 5567789999999999999999999999999864 445677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
++.+.|++++|...++++.+. .|+.. .+..+...+...|
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G-------------------------------------- 366 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAG-------------------------------------- 366 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCC--------------------------------------
Confidence 999999999999999999874 55543 3334456677777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++|...|+++++..|.+. ..++++|...+.+..+.
T Consensus 367 -~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 367 -KTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred -CHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 99999999999999887664 34566777777777664
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.8e-16 Score=185.39 Aligned_cols=424 Identities=12% Similarity=0.031 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
+.....-.+......|+.++|.+++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444455555666677777777777766421 2344456666777777777777777777766542 223445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
.+...|+.++|...++++.+... .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 66667777777777777666422 2333 5566666666677777777777666653 2344445555566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKL---KEEYAMFGK 573 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 573 (902)
|+..++.... .|+.. .. + ....+.....- .+.......+++ ++|+..++.
T Consensus 169 Al~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK--RD-L-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHHHH
Confidence 6666654432 12200 00 0 00000000000 000001111223 667777777
Q ss_pred HHHC-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 574 ILKF-GLVPSVV-TYT----ILVDGLFRAGNIALAMSMIEVMKLAGCP-PNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 574 ~~~~-~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+.. -..+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 7643 1222221 111 1133445778899999999998876522 3321 22246678888999999999998875
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCcCCccc
Q 048778 647 LGVSP---NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-----------QLNS---NVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 647 ~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~---~~~~~l~~~~~~~~~~~~~~~ 709 (902)
..-.. .......+..++...|++++|.++++.+.+..- .|+. ..+..+...+...|
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g------- 373 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN------- 373 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-------
Confidence 43111 134566667778888999999999998876410 1121 12333444444555
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+.++|++.+++++...|.+...+..++..+...|++++|++.++++++
T Consensus 374 --------------------------------~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 374 --------------------------------DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred --------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048778 790 SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTV 836 (902)
Q Consensus 790 ~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (902)
..|+... ...+..+...|++++|..+++++++. .|+......+
T Consensus 422 --l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 422 --LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 5677655 77777889999999999999999975 6765444334
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2e-16 Score=185.11 Aligned_cols=429 Identities=10% Similarity=0.041 Sum_probs=301.6
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 302 STRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLIN 381 (902)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 381 (902)
+..-..-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++... .+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44444555666778999999999999998632 34666799999999999999999999999988632 35667788889
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048778 382 GYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDI 461 (902)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 461 (902)
.+...|++++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998873 33455 88888899999999999999999998644 355556667888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHH
Q 048778 462 ALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT---GEALMIFER 538 (902)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 538 (902)
|++.++.... .|+.. .-+ ....+....... +.......+++ ++|+..++.
T Consensus 169 Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHHH
Confidence 9999987664 23310 000 000000000000 00000111122 556666666
Q ss_pred HHhC-CCCCChh-hHH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 539 MVQN-TDLKTPH-VLN----SFLDVLCKENKLKEEYAMFGKILKFGLV-PSVVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 539 ~~~~-~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 6543 1112211 111 1123345667788888888887765422 322 112246677888888888888888765
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 048778 612 AGCPP---NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-----------VSPN---HITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 612 ~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
..... .......+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 42110 12345556667788888888888888887542 1123 2355677888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 675 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.++++... .+.+...+..+...+...| +.++|++.+++++
T Consensus 381 ~l~~al~~-~P~n~~l~~~lA~l~~~~g---------------------------------------~~~~A~~~l~~al 420 (765)
T PRK10049 381 RARELAYN-APGNQGLRIDYASVLQARG---------------------------------------WPRAAENELKKAE 420 (765)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcC---------------------------------------CHHHHHHHHHHHH
Confidence 99999874 3446778888888888888 9999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
+..|.+...+..++..+...|++++|+.+++++++ ..|+... ..+-..+
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5677765 5444444
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=2.5e-13 Score=140.73 Aligned_cols=463 Identities=10% Similarity=0.036 Sum_probs=347.6
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcC
Q 048778 347 RLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL----MEKRTCKPNIRTYNELMEGLCRMN 422 (902)
Q Consensus 347 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~li~~~~~~g 422 (902)
+|.+..-++.|..+++...+. ++.+...|.+-...--.+|+.+...+++++ +..+|+..+...|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344445555566666555543 444555555544444455555555555433 334566666666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048778 423 KSYKAVHLLKRVVDGGLFP--DEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGF 500 (902)
Q Consensus 423 ~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (902)
..-.+..+....+.-|+.. -..||+.-...|.+.+.++-|..+|...++-- +-+...|......--..|..+.-..+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666665555432 24577777788888888888888888877642 44566777777666677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 501 FGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLV 580 (902)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (902)
+++.... ++-....|......+-..|++..|..++.+..+... .+...+-+-+.......++++|..+|.+... ..
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 9888876 344667777777888889999999999999888643 4677888888889999999999999999886 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
|+...|.--+....-.++.++|++++++.++. ++.-...|..+...+-+.++++.|...|..=.+. ++..+..|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 77777777777777889999999999999886 3333457888888899999999999888776654 355577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+.--+.|.+-.|..++++..-+ -+.+...|-..+.+-.+.|
T Consensus 727 kleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~g-------------------------------------- 767 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAG-------------------------------------- 767 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcC--------------------------------------
Confidence 8888889999999999998864 2446778888888888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+.+.|..+..++++..|.+...|.--+....+.++-......+++. .-|+.. ..++..+....++++|.+.|+
T Consensus 768 -n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 768 -NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred -CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988999999999988888887766665555553 344444 778888888999999999999
Q ss_pred HHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 820 LILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 820 ~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++++. .||. ++|.++...+...|.-++-.+++.+.....+...
T Consensus 842 Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 842 RAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 99985 6776 8888888888999999999999999866655443
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.6e-15 Score=148.88 Aligned_cols=342 Identities=17% Similarity=0.211 Sum_probs=255.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHH-HHHHHHHHhCCCCcCHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINA--LCKSGLVRAG-EMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 238 (902)
+.+=|.|+.. ...|...++.-+|++|.+.|+..+...--.++.. |....++--| ++.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4455666554 4568889999999999999988887766666543 3344444333 45666676666 3333333
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
|.|++.+ -+|+..+ .+..||.+||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -----ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 5565554 4454443 467899999999999999999999999999988889999999999765422
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEA----NGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA-AF 393 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~ 393 (902)
...++..+|......||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 2378899999999999999999999999999988765 5678889999999999999999999999887644 44
Q ss_pred HHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCC
Q 048778 394 ELLALMEK----RTCKP----NIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG----LFPD---EITYNILVDGFCREGQ 458 (902)
Q Consensus 394 ~~~~~m~~----~~~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~ll~~~~~~g~ 458 (902)
.++.++.. +.++| |..-|...+..|....+.+-|.++..-+.... +.|+ .+-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 22332 45567778888889999999988877665421 2222 3456678888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 459 LDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 459 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
.+.-...|+.|+-.-+-|+..+...++++..-.|.++-.-++|.++...|...+......++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999988877889999999999999999999999999999988765554444444444443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.3e-14 Score=165.80 Aligned_cols=339 Identities=9% Similarity=0.061 Sum_probs=151.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 048778 278 LCEVGRLDEAFSLKDEMCEKGWQPST--RTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355 (902)
Q Consensus 278 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (902)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 45566666666666665554 2221 122 55555555566666666665555110 111222222234555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV 435 (902)
Q Consensus 356 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 435 (902)
+|.++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666666666554332 3344445555555556666666655555544 3344444333333333344444555555555
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 436 DGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEAT 515 (902)
Q Consensus 436 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 515 (902)
+..+ .+...+..+...+.+.|-...|.++..+-. +.++-...... ..+.|.+.. +.+..++..-
T Consensus 197 ~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~v----r~a~~~~~~~ 260 (822)
T PRK14574 197 RLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQV----RMAVLPTRSE 260 (822)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHH----hhcccccccc
Confidence 5421 233444445555555555555554443322 11111100000 000011110 0000000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hhH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 516 ITALADGHCKNGKTGEALMIFERMVQN-TDLKTP-HVL----NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTIL 589 (902)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (902)
-. +---.+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00 000123333334443331 111211 111 12234455666666666666666665544344455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAG-----CPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
.++|...+++++|..+|+.+.... .+++......|..++...+++++|..+++++.+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 666666666666666666665432 122233345566666666666666666666654
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=8.5e-15 Score=167.31 Aligned_cols=465 Identities=11% Similarity=0.024 Sum_probs=285.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048778 313 LCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAA 392 (902)
Q Consensus 313 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 392 (902)
..+.|+++.|+..|++..+....-...++ .++..+...|+.++|+..+++.... -.........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35677777777777777665322112233 6666666777777777777776621 111222222334456666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 393 FELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIF 472 (902)
Q Consensus 393 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 472 (902)
+++++++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777777665322 3444555566666777777777777776653 344444433333333345554577777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048778 473 GLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLN 552 (902)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (902)
. +.+...+..+...+.+.|-...|.++..+-... + +...+.-+ . .+.|.+..+ ....++..-
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~vr----~a~~~~~~~-- 260 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQVR----MAVLPTRSE-- 260 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHHHh----hcccccccc--
Confidence 3 334556666666666666666666554432111 0 11111110 0 011111111 111011000
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHH-H---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 553 SFLDVLCKENKLKEEYAMFGKILK-FGLVPS-VVTY-T---ILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
- .+---.+.|+.-++.+.. .+..|. ...| . -.+-++...|++.++++.|+.+...+.+.-..+-..+..
T Consensus 261 --~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 261 --T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred --h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 0 001123555666666554 222232 2222 2 234567889999999999999998876544557788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLG-----VSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSS 701 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 701 (902)
+|...++.++|+.+++.+.... .+++......|.-+|...+++++|..+++.+.+. .|- ..+ .+
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~-~~~-----~~--- 404 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY-QVG-----VY--- 404 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc-EEe-----cc---
Confidence 9999999999999999997532 2334555678899999999999999999999873 231 000 00
Q ss_pred CCcCCccccccccCCCCCCCCCcCCc--chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 702 NKASGVLSISTSCHSDAGSSRLEHDD--DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
| +....+.++ +.+...+..+...|++.+|.+.++++....|.|...+..++..+...|+..+
T Consensus 405 ~----------------~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 405 G----------------LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred C----------------CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 0 000000000 1111223334445599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTV 836 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (902)
|++.++.+.. ..|+... ...+.++...|++.+|..+.+.+.+. .|+......+
T Consensus 469 A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 469 AEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 9999988877 5677666 88888999999999999999999875 5665444344
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=5.7e-14 Score=150.45 Aligned_cols=694 Identities=13% Similarity=0.063 Sum_probs=339.7
Q ss_pred HHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048778 148 VALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHG 227 (902)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (902)
.++-.+...|..|+-+||..+|..||..|..+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566778899999999999999999999999888 8888876666667777888887777777766555
Q ss_pred CCcCHHHHHHHHHHHhccCCHHH---HHHHHHHhhhc--------------------CCCCCCHhhHHHHHHHHHhcCCh
Q 048778 228 FCLDTHICTSLVLGHCRGNDLKE---AFKVFDVMSKE--------------------ASYRPNSVTFTTLIHGLCEVGRL 284 (902)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--------------------~~~~~~~~~~~~li~~~~~~g~~ 284 (902)
.|...+|+.|...|...||+.. ..+.++.+... ++.-||.. ..+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence 5677788888888888877643 33322222221 01112221 222233334444
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048778 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDIS-LTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGK 363 (902)
Q Consensus 285 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (902)
+.+++++..+....... ++...+.-+.... .+++-..+-....+ .|+..+|..+++.-...|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 44444443332221110 0000122222111 11211111111111 35555666666665566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------------------
Q 048778 364 MLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY------------------ 425 (902)
Q Consensus 364 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~------------------ 425 (902)
|.+.|++.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|...
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrs 306 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRS 306 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHH
Confidence 6666655555544444433 4555555555555666666666655554444443322211
Q ss_pred ------HHHHHHH------------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHH
Q 048778 426 ------KAVHLLK------------RVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFG--L-VPDGFTFTSI 484 (902)
Q Consensus 426 ------~A~~~~~------------~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~-~~~~~~~~~l 484 (902)
.|.+.++ +..-.|+......|..... ....|.-++..++...+..-- . ..++..|..+
T Consensus 307 aa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 307 AACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred HHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 1111111 1111233333333332222 222566666777666664311 1 1234455554
Q ss_pred HHHHHhcCCh-------------------hHHHHHHHHHHHCCCCCCH----------------------------HHHH
Q 048778 485 IDGLCKLGKP-------------------ELANGFFGLMVKKGISPDE----------------------------ATIT 517 (902)
Q Consensus 485 i~~~~~~g~~-------------------~~A~~~~~~~~~~~~~~~~----------------------------~~~~ 517 (902)
+.-|.+.-+. +..-.+-+.+... .||. ..-+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh--CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 4444332110 0000011111100 1111 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH
Q 048778 518 ALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF--GLVPSVVTYTILVDGLFR 595 (902)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~ 595 (902)
.++..++..-+..+++..-+..... .-+..|..||+.++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 2333333333333333222222111 11256888889999999999999888887642 234456667888888999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGC-PPN-VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
.+...++..++.++.+.-. .|+ ..++-.+.+.....|+.+.-.++++-+...|+..+ .-++..+.+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 9999999999998877321 222 34556677777888888888888887777665442 22333344455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH---------------------HHHhcCCcCCccccccc----cCCCC----CCCCCc
Q 048778 674 KIVSFMVANGCQLNSNVYSALLA---------------------GLVSSNKASGVLSISTS----CHSDA----GSSRLE 724 (902)
Q Consensus 674 ~~~~~m~~~g~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~ 724 (902)
+..+.-.+. .+|.+.....+.. .|.+.|+...+....+. +..+. .+....
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 444443332 2222222222211 23444432222111110 00000 000000
Q ss_pred CCc---------chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 048778 725 HDD---------DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMKSGV 792 (902)
Q Consensus 725 ~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 792 (902)
+.. ....++-+.+.+.|+++.|..++.++.- .++......|+..+.+.. +..++...-+++.+ .
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV--~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~--~ 771 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQV--SKSPMKLFHLASILRRMNEEVDVPEIQAETEKASE--L 771 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcC--CcchHHHHHHHHHHHhhchhccchhHHHHHHHHHh--c
Confidence 000 0001222345556666666666666541 345555555655555444 23333333344433 2
Q ss_pred CchHhH-----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 793 FPAKAI-----TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 793 ~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
.+...+ ...+...++....+.|.+.+.+..+.....+.+++...++++.+.. ..|..... .|.+.....
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd--~~aa~sha----~Ges~~~l~ 845 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND--QLAAQSHA----SGESSKELL 845 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC--HHHHHhcc----cccchhhhh
Confidence 222211 1112223334444566777777776544445566666767665544 22221111 133333333
Q ss_pred HHHHHHHHhcCCcHhHHHH
Q 048778 868 VLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 868 ~~~l~~~~~~~g~~~~a~~ 886 (902)
-..++..+.+.-.|.+|..
T Consensus 846 tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 846 TSRLINILLRRLGLAEALS 864 (1088)
T ss_pred hHHHHHHHHHHhhHHHHHH
Confidence 3334455556656666665
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.3e-13 Score=135.72 Aligned_cols=445 Identities=15% Similarity=0.198 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccC--CHH-HHHHHHHHhhhcCCCCCCHhhHHHH
Q 048778 198 IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGN--DLK-EAFKVFDVMSKEASYRPNSVTFTTL 274 (902)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~-~A~~~~~~m~~~~~~~~~~~~~~~l 274 (902)
.+=|.+++. ..+|.++.+.-+|+.|...|++.+..+-..|...-|-.+ ++- .-++.|-.|.+. | ..+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-G-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-c-ccccccc---
Confidence 455666664 467899999999999999999988888877766544333 222 234566666653 2 2233344
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 275 IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKI 354 (902)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (902)
+.|.+.+ -+|+.. +-+..||.+||.++|+-...+.|.+++++-.....+.+..++|.+|.+-. +
T Consensus 191 -----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 4455443 233332 23778999999999999999999999999998888889999999987643 2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 048778 355 DEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA----AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYK-AVH 429 (902)
Q Consensus 355 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~-A~~ 429 (902)
....++..+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 3337899999999999999999999999999998765 56788999999999999999999999999988755 444
Q ss_pred HHHHHHh----CCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCh
Q 048778 430 LLKRVVD----GGLFP----DEITYNILVDGFCREGQLDIALKIFNSMSIFG----LVPD---GFTFTSIIDGLCKLGKP 494 (902)
Q Consensus 430 ~~~~~~~----~g~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~ 494 (902)
++.++.. +.+.| |...|...+..|....+.+-|.++..-+.... +.|+ .+-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443 22332 45566777888888888888888776554321 2222 24567778888888899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 495 ELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKI 574 (902)
Q Consensus 495 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (902)
+.-...|+.|.-.-+-|+..+...++.+..-.+.++-.-+++..+..-|..-+.....-++. .|
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HH
Confidence 99999999998887788888888888888888888888888888877654333333222222 23
Q ss_pred HHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 048778 575 LKFGLVPSVVTYTILVDGLFRA--GNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSP 651 (902)
Q Consensus 575 ~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 651 (902)
......|+...-..+-....+. .-.+.....-.+|....++| ...+...-.+.+.|+.++|.+++.-+.+.+ -.|
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 2222223222111111111111 11111122223343433333 334455555677777777777777765332 112
Q ss_pred CHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 652 NHITYS---ILVRAHASTGRLDHAFKIVSFMVAN 682 (902)
Q Consensus 652 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~ 682 (902)
-....+ -+++.-.+.+....|...++-|...
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 222333 4455555667777777777777654
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.3e-14 Score=141.63 Aligned_cols=278 Identities=12% Similarity=0.079 Sum_probs=193.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC--KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (902)
-+.+.|+++.|.++++-+.+.....-....+.|-..+. ...++-.|.++-+..+... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46788888888888887766543333333333322222 2345666666666554311 01111111112233457889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
++|.+.|++.+..+-.-....|| +.-.+-..|+.++|++.|-++... +..+......+.+.|-...+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999888653221122232 334567788999999988887643 2456777778888888888999999988777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC
Q 048778 680 VANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS 759 (902)
Q Consensus 680 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 759 (902)
... ++.|+.+...|.+.|-+.| +...|.+.+-+--...|.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqeg---------------------------------------dksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEG---------------------------------------DKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhccc---------------------------------------chhhhhhhhhhcccccCc
Confidence 653 5557888888888888888 788888887777777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVI 837 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (902)
+..+...|+..|....-+++|+..|+++.- +.|+..- ..++.|+.+.|++.+|.++++....+ +.-|.++...|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 999999999888888889999999988866 6787766 66677788899999999999988764 556778888888
Q ss_pred HHHHhcCC
Q 048778 838 QGLQSEGR 845 (902)
Q Consensus 838 ~~l~~~g~ 845 (902)
++....|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 87766664
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.8e-14 Score=142.32 Aligned_cols=453 Identities=12% Similarity=0.062 Sum_probs=213.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHH
Q 048778 379 LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYN-ELMEGLCRMNKSYKAVHLLKRVVDGGLFPD----EITYNILVDGF 453 (902)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~ 453 (902)
|..-|..+....+|+..++-+.++...|+.-... .+-..+.+..++.+|++.++..+++-+..+ +...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344444555556666666665555555543221 122344455566666666666555322111 12333333445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHHH
Q 048778 454 CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGIS------------PDEATITALAD 521 (902)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~li~ 521 (902)
.+.|+++.|+.-|+...+. .|+..+-..|+-++..-|+-++..+.|..|+..... |+....+..|.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 5667777777777666654 466655555555555666667666777666653222 22222222221
Q ss_pred -----HHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 522 -----GHCKNG--KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLF 594 (902)
Q Consensus 522 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (902)
-.-+.. +.++++-.--+++.--+.|+-.. + .+-+.+.+..-....+..+... .-...|.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la~dlei--~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELAIDLEI--NKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhhhhhhh--hHHHHHH
Confidence 111111 11111111111111111121100 0 0001111111000000000000 0122355
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGL-CQ-RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
+.|+++.|+++++-+.+.+-+.-...-+.|...+ .+ ..++..|..+-+...... ..+......-.+.-...|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 6667777766666665543222222222222211 22 224555655555554332 23333333333344455666777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
.++|++.+.. |...-.+|.. -| -++-+.|++++|++.|-+
T Consensus 510 ~~~ykeal~n----dasc~ealfn----ig--------------------------------lt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 510 AEFYKEALNN----DASCTEALFN----IG--------------------------------LTAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHHHHHcC----chHHHHHHHH----hc--------------------------------ccHHHhcCHHHHHHHHHH
Confidence 7777666542 2211111111 11 111222366666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+...-.++...+..+++.|....+...|++++.++.. +.|++.. ..|++.|-+.|+-.+|.+..-.-... +.-+.
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~ni 626 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNI 626 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcch
Confidence 6555555666666666666666666666666666654 4444333 66666666666666666655443332 22245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH-hcCCcHhHHHHHHHHHHh
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL-LTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~l~~~~~ 893 (902)
++..||+.-|....-+++|+.+++++ .-+.|+...|..++..| .+.|+|..|.++++.+..
T Consensus 627 e~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666666666665 33445555665544443 345666666666666544
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=4.1e-13 Score=144.05 Aligned_cols=672 Identities=13% Similarity=0.055 Sum_probs=344.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 048778 184 VFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEAS 263 (902)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 263 (902)
++-.+...|+.||.+||.++|..||..|+.+.|- +|..|.-...+.+...+++++.+....|+.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556778899999999999999999999999999 9999998888889999999999999999987765
Q ss_pred CCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHH----CCCCcCHhhHH--------------HHHHHHHhcCChHHH
Q 048778 264 YRPNSVTFTTLIHGLCEVGRLDE---AFSLKDEMCE----KGWQPSTRTYT--------------VLIKALCDISLTDKA 322 (902)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~g~~p~~~~~~--------------~li~~~~~~g~~~~A 322 (902)
.|...||..|..+|.+.|+... ..+.+..... .|+.-....+- ..+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 3888999999999999998754 2222222211 12211111111 111122223333444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 048778 323 LSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR 402 (902)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (902)
++++..+....-. . ..-.++.-... +..-.+++.......--.|+..+|..++..-..+|+++.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 4443333211100 0 01111222221 12223333333332111489999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048778 403 TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFT 482 (902)
Q Consensus 403 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (902)
|++.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|....+.....-- . ......+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--h--g~tAavrs 306 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--H--GFTAAVRS 306 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--h--hhhHHHHH
Confidence 998888888777766 7888888889999999999999999988887777755532221111000 0 00111122
Q ss_pred HHHHHHHhcCChhH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-CChhhHHHH
Q 048778 483 SIIDGLCKLGKPEL-----ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTD--L-KTPHVLNSF 554 (902)
Q Consensus 483 ~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~~l 554 (902)
.+.++.....+++. ....+.+..-.|+......|...+... ..|.-++..++-..+..-.. . .++..|..+
T Consensus 307 aa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 307 AACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred HHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 22222111111110 111111111123322333333333221 23444443333333322100 0 011112111
Q ss_pred HHHHHhc----------------------CChhHHHHHHHHH------------HH----CCCCC-------CHHHHHHH
Q 048778 555 LDVLCKE----------------------NKLKEEYAMFGKI------------LK----FGLVP-------SVVTYTIL 589 (902)
Q Consensus 555 i~~~~~~----------------------g~~~~A~~~~~~~------------~~----~~~~p-------~~~~~~~l 589 (902)
+.-|.+. ....+..++.... .. ....| -...-+.+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 1111110 0111111111110 00 00000 11123445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcC
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD--LGVSPNHITYSILVRAHASTG 667 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g 667 (902)
+..++..-+..+++..-+.....- -+ ..|..||+-++...+.+.|..+.++... ..+..|..-+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 555555555555554333332211 11 4577777777777777777777777652 234455666777777777777
Q ss_pred CHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 668 RLDHAFKIVSFMVANG-CQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 668 ~~~~A~~~~~~m~~~g-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
....+..+++++.+.- ..|+ ..+..-+++.....|+.+....++.-..+ .++.. + .....+..+.++...
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs----lgl~e---t-gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS----LGLSE---T-GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH----hhhhh---c-ccceEEEeeccchhh
Confidence 7777777777776531 1121 22233333343444422211111000000 00000 0 001111222234444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHH-----------HHcC-C
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVV---------------------ELCRAGRIVEADRIMKDI-----------MKSG-V 792 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~-----------~~~~-~ 792 (902)
|.+.++...+...+.+.....+.+ .|.+.|++.+|-.+.+.= .+.| +
T Consensus 615 a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~ 694 (1088)
T KOG4318|consen 615 AQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEI 694 (1088)
T ss_pred hhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCcc
Confidence 444443333333222222222222 244555555554443321 0000 1
Q ss_pred Cc---------hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC
Q 048778 793 FP---------AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGR---NKQAKNLVSDLFRY 859 (902)
Q Consensus 793 ~p---------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~ 859 (902)
.| +... ..|+..|...|+++.|..+|.++. +.|.......++.++.+... ..++....+++.+.
T Consensus 695 ~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 695 VPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASEL 771 (1088)
T ss_pred ccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhc
Confidence 11 1111 567778999999999999999886 57888888888888865443 44555555555444
Q ss_pred CCCCcchhHHHHHHH-HhcCCcHh-HHHHHHHHHHhcC
Q 048778 860 NGIEEKAAVLPYIEF-LLTGDELG-KSIDLLNLIDQVH 895 (902)
Q Consensus 860 ~~~~~~~~~~~l~~~-~~~~g~~~-~a~~~l~~~~~~~ 895 (902)
.......+...-..+ ....++.. -|.+.+++.....
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 333222222222222 23345544 6888888887763
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.4e-10 Score=114.64 Aligned_cols=441 Identities=10% Similarity=0.080 Sum_probs=264.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCH-hhHHHHHHHHHhcCChhH
Q 048778 208 CKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNS-VTFTTLIHGLCEVGRLDE 286 (902)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 286 (902)
..++++..|+.+|+.++..+ ..+...|-..+.+-.++..+..|..++++... - -|-+ ..|---+..=-..|++..
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~-lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--I-LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--h-cchHHHHHHHHHHHHHHhcccHH
Confidence 34455555555665555443 34444555555555555555555555555553 1 2222 233333333334455555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048778 287 AFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ 366 (902)
Q Consensus 287 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 366 (902)
|.++|++..+ +.|+...|++.|+.=.+-+.++.|..+++...-. .|++.+|-.....=.+.|.+..|..+|+...+
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555443 3455555555555555555555555555554432 34555555444444455555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhh
Q 048778 367 DGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-EIT 445 (902)
Q Consensus 367 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~ 445 (902)
. + -|... +...+.+....-.+...++.|.-++.-.++.-+... ...
T Consensus 236 ~-~-~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL 282 (677)
T KOG1915|consen 236 F-L-GDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL 282 (677)
T ss_pred H-h-hhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 1 0 01110 112222223333334455556666655555321111 223
Q ss_pred HHHHHHHHHhcCCHHHHHH--------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HH
Q 048778 446 YNILVDGFCREGQLDIALK--------IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDE--AT 515 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 515 (902)
|..+...--+-|+.....+ -++.+++.+ +-|-.+|-..++.-...|+.+...++|+..+.. ++|-. ..
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~ 360 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHH
Confidence 3333332223344332222 133444443 457777877888777888888888888888765 33321 11
Q ss_pred HHHHHH-----H---HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 516 ITALAD-----G---HCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVL----CKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 516 ~~~li~-----~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
|...|- + -....+++.+.++++..++. ++....|+..+--.| .++.++..|.+++...+ |..|..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCch
Confidence 222111 1 12467888899999988883 555566666654444 46789999999999887 577899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~ 662 (902)
.++...|..-.+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|..+|+-.++.. +......|.+.|+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 999999999999999999999999999975 6678899888888888999999999999988642 22345677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 697 (902)
-...|.++.|..+++++++. .+...+|-++...
T Consensus 517 Ei~~~E~ekaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred hhhcchHHHHHHHHHHHHHh--cccchHHHhHHHH
Confidence 88999999999999999974 5555677766543
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2e-10 Score=115.23 Aligned_cols=455 Identities=11% Similarity=0.100 Sum_probs=265.3
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHL 430 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 430 (902)
.+++..|..+|++.+... ..+...|-..+.+=.++..+..|..+++.....-...| ..|-..+..--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 344444455555444432 12344444444444444555555555544443311111 1122222222334555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 431 LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGIS 510 (902)
Q Consensus 431 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 510 (902)
|++..+ ..|+...|.+.++.-.+-..++.|..+++..+-. .|++.+|--....=-+.|+...|..+|....+. -
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 555443 2355555555555555555555555555554432 355555555444444555555555555444432 0
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCC---hhHHHH-----HHHHHHHC
Q 048778 511 PDE----ATITALADGHCKNGKTGEALMIFERMVQNTDLKT-PHVLNSFLDVLCKENK---LKEEYA-----MFGKILKF 577 (902)
Q Consensus 511 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~~ 577 (902)
.|. ..+.+....-..+..++.|.-+|+-.+.+-.... ...|..+...--+-|+ +++++. -++.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111 1222222222234445555555555554311111 1222222222222232 222221 23333333
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---HhcCCHHHHHHHHHHHHHC
Q 048778 578 GLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH--T-----YTVIINGL---CQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~-----~~~li~~~---~~~g~~~~A~~~~~~m~~~ 647 (902)
-+.|..+|--.++.--..|+.+...++|++++.. ++|-.. . |.-+=.+| ....+.+.+.++++..++.
T Consensus 318 -np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 -NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred -CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2457778888888888889999999999999875 566331 2 22221222 3467899999999999884
Q ss_pred CCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCC
Q 048778 648 GVSPNHITYSILVRA----HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 648 g~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
++-...||..+--. -.++.++..|.+++..++ |..|...++...|..-.+.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~--------------------- 451 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLR--------------------- 451 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHh---------------------
Confidence 45556666554433 357789999999999988 77898888888887777777
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHhH-HHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFP-AKAI-TSI 801 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~-~~l 801 (902)
+++....+|++.++-+|.+..+|...+..=...|+.+.|..+|.-++...... .... ...
T Consensus 452 ------------------efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 452 ------------------EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred ------------------hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998643211 1111 555
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ-----SEG-----------RNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~-----~~g-----------~~~~A~~~~~~~~~~ 859 (902)
++.=...|.+++|..+++++++. .+-..+|...+..-. ..| ....|..+|+++...
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 55566899999999999999975 344445555443222 344 567788888887533
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.4e-11 Score=118.16 Aligned_cols=290 Identities=11% Similarity=0.062 Sum_probs=170.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL--VPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~ 599 (902)
++......+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+... .-|..+|.-++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 4444445566666666666655555555445455555556666666666666665311 11445555444 2232221
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
. +.++.+-...--+--..|..++.+-|.-.++.+.|..+|+..++.+ +-....|+.++.-|....+...|++-++++
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1111111110001122344455566666667777777777777654 334566677777777777777777777777
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC
Q 048778 680 VANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG 758 (902)
Q Consensus 680 ~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 758 (902)
++ +.| |...|-.|..+|...+ -..=|+-.|+++.+..|
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~---------------------------------------Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMK---------------------------------------MHFYALYYFQKALELKP 429 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhc---------------------------------------chHHHHHHHHHHHhcCC
Confidence 75 344 6667777777776666 55666677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCC-CHHH
Q 048778 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES----G-FVP-SFES 832 (902)
Q Consensus 759 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p-~~~~ 832 (902)
.|+..|.+|+.+|.+.++.++|+..|+.+...|-....+...|+..|.+.++.++|..++++-++. | +.| ...+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 777777777777777777777777777777644322222267777777777777777777766542 2 223 2244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+|+.-+.+.+++++|..+..+.+
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4556666667777777776666543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.4e-12 Score=128.67 Aligned_cols=291 Identities=10% Similarity=0.056 Sum_probs=223.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcC
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC--PPNVHTYTVIINGLCQRG 632 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g 632 (902)
..++....+.+++..-.......|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 345555567888888888888888776666666666667788999999999999998631 125677877763 3333
Q ss_pred CHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCcccc
Q 048778 633 RFKEAEMLLFK-MFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 633 ~~~~A~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+-. +.++.+ ....+ +--+.|...+.+-|.-.++.++|..+|++.++ +.|. ...|+.+..-|....
T Consensus 312 ~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmK-------- 378 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMK-------- 378 (559)
T ss_pred hHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhc--------
Confidence 222 222222 21211 34456777888888888999999999999997 5664 467777777888888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+...|++.|+.+++.+|.|-.+|..|+.+|.-.+...=|+-.|+++..
T Consensus 379 -------------------------------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~- 426 (559)
T KOG1155|consen 379 -------------------------------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE- 426 (559)
T ss_pred -------------------------------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCC
Q 048778 791 GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY----N-GIE 863 (902)
Q Consensus 791 ~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~-~~~ 863 (902)
++|++.- ..|+.+|.+.++.++|++-++++...| +.+...+..++..|.+.++.++|..++++.++. + ..|
T Consensus 427 -~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 427 -LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred -cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 7787665 999999999999999999999999876 445678899999999999999999999997753 2 233
Q ss_pred cch-hHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 864 EKA-AVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 864 ~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
... ...-|...+.+.+++++|........+.
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 211 1122556677889998888766555443
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.3e-12 Score=131.24 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=177.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 593 LFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
+.-.|+.-.|..-|+..++.... +...|.-+..+|....+.++..+.|.+..+.+ +-|..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44578889999999999886533 33337777888999999999999999999876 56788888888888888999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 673 ~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
..-|++.+. +.| +...|--+.-+..+.+ +++++...|+
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~---------------------------------------k~~~~m~~Fe 452 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQH---------------------------------------KIAESMKTFE 452 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHH
Confidence 999999986 566 3445555555555666 9999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch------HhH---HHHHHHHHccCChHHHHHHHHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA------KAI---TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~---~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+.+++.|.-+..|+..+..+...+++++|++.|+.+++ +.|. .+. ..-+-.+.-.+++.+|..+++++.
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 4455 111 111112223489999999999998
Q ss_pred HcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 823 ESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 823 ~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+. +|.. ..|..++.....+|+.++|+++|++.....-
T Consensus 531 e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 531 EL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 84 6754 7888999999999999999999999765543
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.5e-12 Score=130.89 Aligned_cols=220 Identities=16% Similarity=0.091 Sum_probs=173.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCc
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~ 707 (902)
.-.|+.-.|..-|+..++..-. +...|..+...|....+.++..+.|.+..+ +.| ++.+|..-...+.-.+
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~----- 408 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQ----- 408 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHH-----
Confidence 3468888999999999886522 333388888889999999999999999986 444 4555555554444444
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
++++|..-|++.+.++|.+...|..++.+..+.++++++...|+..
T Consensus 409 ----------------------------------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 409 ----------------------------------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ----------------------------------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 048778 788 MKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS-------FESHCTVIQ-GLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 788 ~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~-~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.++-+.-.++.+..+..+..++++++|.+.++.+++. .|+ +..+..-+- .+.-.+++.+|+.+++++++.
T Consensus 455 kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 455 KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 9865443444488899999999999999999999863 343 222222111 222348999999999999888
Q ss_pred CCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 860 NGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 860 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
++.- ...+..++...+..|+.++|+++|++-..
T Consensus 533 Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 533 DPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred CchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7653 44677889999999999999999997654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=7.3e-14 Score=146.31 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048778 528 KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFG--LVPSVVTYTILVDGLFRAGNIALAMSM 605 (902)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (902)
+..+|...|.....+ +.........+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888774443 33444666777788888888888888888877531 122566777666543321 22222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048778 606 I-EVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC 684 (902)
Q Consensus 606 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 684 (902)
+ +++.+.. +-...+|-++.++|.-+++++.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+..+. +
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 2 2333322 4455778888888888888888888888877643 22567777777777777788888888877763 3
Q ss_pred CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHH
Q 048778 685 QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDF 763 (902)
Q Consensus 685 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 763 (902)
.| +...|..+...|.+++ +++.|.-.|+++++.+|.+.+.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqe---------------------------------------k~e~Ae~~fqkA~~INP~nsvi 525 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQE---------------------------------------KLEFAEFHFQKAVEINPSNSVI 525 (638)
T ss_pred CchhhHHHHhhhhheeccc---------------------------------------hhhHHHHHHHhhhcCCccchhH
Confidence 44 2334445555666666 7888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGL 840 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l 840 (902)
...++..+.+.|+.++|+.+++++.. +.|.+.. ...+..+...+++++|+..++++.+. .|+. ..+..++.+|
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIY 601 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 88888888888888888888888877 4455544 67777777778888888888888763 5653 6667777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
.+.|+.+.|+.-|.-|+..++....
T Consensus 602 k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHccchHHHHhhHHHhcCCCccch
Confidence 8888888888777777666554443
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.9e-15 Score=154.46 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
...+.+.|++++|++++++.....-+| |...|..+.......+++++|...++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444455555555555554333221112 22233333334444555555555555555433 1233344444444 45555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++|.+++.+..+. .++...+...+..+...+ +++++.+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~---------------------------------------~~~~~~~ 131 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLG---------------------------------------DYDEAEE 131 (280)
T ss_dssp ---------------------------H-HHHTT----------------------------------------HHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHh---------------------------------------HHHHHHH
Confidence 55555555544432 233333444444444444 5555555
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 749 LRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 749 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+++++.+.. +.++..|..++..+.+.|+.++|++.++++++ ..|++.. ..+++.+...|+.+++..+++...+.
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 555554433 44555555555555666666666666666655 3343322 55555555566665555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 825 GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 825 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
. ..++..+..++.++...|+.++|+.+++++.+..+ .|......+.+++...|+.++|.++++++.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred C-cCHHHHHHHHHHHhccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 1 22334445555555566666666666666544332 234444455555666666666665555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.7e-12 Score=140.86 Aligned_cols=288 Identities=9% Similarity=0.067 Sum_probs=177.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTPH-VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
..|+++.|.+.+.+..+.. |++. .+-.........|++++|...+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4677777777776665532 3322 223334556666777777777777665321222223333466667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHHH
Q 048778 604 SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS-ILVR---AHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 604 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~---~~~~~g~~~~A~~~~~~m 679 (902)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+.. +...+. .-.. .+...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777764 445566777777777777777777777777776533 332221 1111 112223333333444444
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 680 VANG---CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 680 ~~~g---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
.+.. .+.+...+..+...+...| +.++|.+.+++.++.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g---------------------------------------~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCD---------------------------------------DHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCC---------------------------------------ChHHHHHHHHHHHhh
Confidence 4321 1125666667777777777 888888888888887
Q ss_pred CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 757 GGSTTDFY--NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 757 ~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
.|++.... ..........++.+.+++.+++..+ ..|++. . ..+++.|.+.|++++|.++|++.......|+.
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 76665322 1222223345677778888877777 345555 4 78888888888888888888853333346777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+.+.+++..+.+.|+.++|.+++++.+
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777788888888888888888888754
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4e-11 Score=123.31 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=222.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
..++.......+-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+-.++++. .|-...+|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345566667777888899999999999998874 3456666666777888999988888888888876 46677899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
..-|.-.|+..+|.+.|.+....+ +.=...|..++..|.-.|.-++|+..+..+.+. ++-...-+--+.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~-- 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN-- 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc--
Confidence 998988999999999999987643 223578999999999999999999999888763 1111112222333455566
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++.|.+.|..+....|.|+..++-++-...+.+.+.+|...|
T Consensus 395 -------------------------------------n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 395 -------------------------------------NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred -------------------------------------cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHHHHc--CCCc----hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 785 KDIMKS--GVFP----AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 785 ~~~~~~--~~~p----~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+..+.. .+.+ -..+ +.|+.+|.+.+++++|+..+++.+... +.+..++..++.+|...|+++.|++.|.+++
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 998721 0111 1223 899999999999999999999999752 4477899999999999999999999999974
Q ss_pred hCCCCCcchhHHHHHH
Q 048778 858 RYNGIEEKAAVLPYIE 873 (902)
Q Consensus 858 ~~~~~~~~~~~~~l~~ 873 (902)
...|+...-..++.
T Consensus 517 --~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 517 --ALKPDNIFISELLK 530 (611)
T ss_pred --hcCCccHHHHHHHH
Confidence 44566544444443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2e-13 Score=143.11 Aligned_cols=285 Identities=11% Similarity=0.059 Sum_probs=206.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 563 KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAG--CPPNVHTYTVIINGLCQRGRFKEAEML 640 (902)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (902)
+..+|...|....+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+- +.-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 456788888874443 33344566677888888888888888888887642 1124556666654332 22222223
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCC
Q 048778 641 LFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAG 719 (902)
Q Consensus 641 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (902)
-+++++.. +..+.+|.+++++|.-+++.+.|++.|+++++ +.| ...+|+.+..-+....
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~e----------------- 469 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATE----------------- 469 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhH-----------------
Confidence 34444443 55678888888888888888888888888886 566 5567777776666666
Q ss_pred CCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-
Q 048778 720 SSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI- 798 (902)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~- 798 (902)
.+|.|...|+.++..+|.+..+|..|+..|.+.++++.|+-.|+++++ +.|....
T Consensus 470 ----------------------e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi 525 (638)
T KOG1126|consen 470 ----------------------EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVI 525 (638)
T ss_pred ----------------------HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhH
Confidence 888888888888888888888888888888888888888888888888 6676555
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 799 -TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
..++..+-+.|+.++|+++++++... +| ++..-...+.++...|++++|+..++++.+.-+. +..++..++..|.
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k 602 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYK 602 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 77788888888888888888888763 34 4555566777888888888888888887555432 3445667777888
Q ss_pred cCCcHhHHHHHHHHHHhcCccc
Q 048778 877 TGDELGKSIDLLNLIDQVHYRQ 898 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~~~~~~ 898 (902)
+.|+.+.|+..+--+.+-..+-
T Consensus 603 ~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHccchHHHHhhHHHhcCCCcc
Confidence 8888888888888777665543
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=8.4e-15 Score=150.99 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=108.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 553 SFLDVLCKENKLKEEYAMFGKILKFG-LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
.+...+.+.|++++|++++++..... .+.|...|..+.......++.+.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667777888888888886544433 23345556666667777888999999999988765 2245566666666 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcCCcccc
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG-CQLNSNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+++++|.++++...+. .++...+..++..+.+.|+++++.++++.+.+.. .+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-------- 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-------- 160 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------
Confidence 8999999988877654 3566777788888889999999999999877532 3456777888888888888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++|.+.++++++.+|.|+.....+++.+...|+.+++.++++...+.
T Consensus 161 -------------------------------~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 161 -------------------------------DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp -------------------------------HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888774
Q ss_pred CCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 791 GVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 791 ~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
. ..+... ..++.+|...|+.++|+.++++..+.+ ..|+.....+++++...|+.++|..+.+++.+
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 3 223344 889999999999999999999988752 33678888899999999999999999888643
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=4.4e-12 Score=136.80 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=204.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYT--VIINGLCQRGRFKEAE 638 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~ 638 (902)
.|++++|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777776665443111 1223333344457888888888888888774 45543322 3356778888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCcCCccccc
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN-------VYSALLAGLVSSNKASGVLSIS 711 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~ 711 (902)
..++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.. .|..++.......
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--------- 243 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--------- 243 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 9998888765 5567788888888889999999999999888765443221 1222222222222
Q ss_pred cccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 712 TSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+.+...+.++.+....|.++.....++..+...|+.++|.+++++.++..
T Consensus 244 ------------------------------~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~ 293 (398)
T PRK10747 244 ------------------------------GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ 293 (398)
T ss_pred ------------------------------CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55666666666666568889999999999999999999999999998843
Q ss_pred CCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHH
Q 048778 792 VFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLP 870 (902)
Q Consensus 792 ~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (902)
|+.. ..++.+....++.+++++..++..+. .| |+..+..++..+.+.|++++|.+.++++++. .|+...+..
T Consensus 294 --~~~~-l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 294 --YDER-LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred --CCHH-HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3332 23444455669999999999999875 45 4577888999999999999999999998665 466666677
Q ss_pred HHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 871 YIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 871 l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+...+.+.|+.++|.+++++-...
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888899999999999999876543
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=6.5e-12 Score=136.36 Aligned_cols=286 Identities=10% Similarity=-0.025 Sum_probs=216.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV--HTYTVIINGLCQRGRFK 635 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 635 (902)
...|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|.+.+.++.+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4579999999999988774 344 344555577788999999999999998875 3443 34444578888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCcCCcccccc
Q 048778 636 EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL---VSSNKASGVLSIST 712 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 712 (902)
.|...++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.+..+.......-...+ ...+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~---------- 239 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA---------- 239 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999875 5577889999999999999999999999999876443222211111111 2222
Q ss_pred ccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 713 SCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG----STTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
..+++.+.+..+.+..| .++..+..++..+...|++++|.+++++.+
T Consensus 240 -----------------------------~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 240 -----------------------------MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -----------------------------HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33334445555555544 689999999999999999999999999999
Q ss_pred HcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 789 KSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVPS-F--ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 789 ~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+.. |+... ..........++.+.+.+.+++..+. .|+ + .....+++.+.+.|++++|.++++++.....
T Consensus 291 ~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 291 KKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred hhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 854 55442 12222234567889999999999875 454 4 5667899999999999999999996545555
Q ss_pred CCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 862 IEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.|+...+.+++..+.+.|+.++|.+++++-.
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777899999999999999999999754
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=3.7e-08 Score=103.10 Aligned_cols=566 Identities=11% Similarity=0.101 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 048778 233 HICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA 312 (902)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 312 (902)
.+|-..+..+.+.|++...+..|++......+......|...+.-.-..|-++-++.++++..+. ++..-.-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555566666677777777777766553222233345666666666666666777777666553 33345556666
Q ss_pred HHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048778 313 LCDISLTDKALSLFDEMVVKR------CKPNAHTYTVLIDRLCREGKID---EANGMCGKMLQDGHFPG--VVTYNVLIN 381 (902)
Q Consensus 313 ~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~--~~~~~~li~ 381 (902)
+++.+++++|.+.+...+... .+.+...|..+.+...+.-+.- ...+++..+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 666677777666666555321 1223344444444444332221 122223333221 122 234556666
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHH
Q 048778 382 GYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV-DGGLFPDEITYNILVDGFCREGQLD 460 (902)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~ 460 (902)
-|.+.|.+++|..++++.... ...+.-|..+.+.|.......-+..+= -.. +.+-.-+.. +++
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHH
Confidence 666666666666666555443 123333444444443322111111100 000 000000111 111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 461 IALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV 540 (902)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (902)
-.+.-|+.+...+. .+++...-+.-+.+...|..-+.. ..|+..+-...+.+..
T Consensus 321 ~~~a~~e~lm~rr~------------------------~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 321 LHMARFESLMNRRP------------------------LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHHhccc------------------------hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH
Confidence 22222222222110 000000000011233333332222 2333444444444443
Q ss_pred hCCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 541 QNTDLK------TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS---VVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 541 ~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
+. +.| -...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.++.+++.|+++.+....
T Consensus 375 ~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 375 KT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred Hc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 32 111 011244444555555555555555555544322211 22333333444444555555555544432
Q ss_pred CC-----------C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 612 AG-----------C------PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 612 ~~-----------~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.. . ..+...|...++..-..|-++....+++.+++..+. ++.........+-...-++++.+
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHH
Confidence 10 0 113345666666666778888889999999987643 33333344444556677899999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 675 ~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
.|++-+..=-.|+ ...|+..+.-+.+.- .+ ...+.|..+|+++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~ry--gg----------------------------------~klEraRdLFEqa 576 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRY--GG----------------------------------TKLERARDLFEQA 576 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHh--cC----------------------------------CCHHHHHHHHHHH
Confidence 9988765422344 357777776665532 00 1899999999999
Q ss_pred HhcCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCC
Q 048778 754 ESCGGSTTDFYN--FLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER----KYDDCLEFMNLILESGFV 827 (902)
Q Consensus 754 ~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~ 827 (902)
++.-||.-.-+. ..+..=.+.|-...|+.+|+++... +.+..- ..+-+.|.+.- -+..-..+++++++. -
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~-l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR-LDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 995565543333 3333445668889999999998653 444332 33333333211 123345667777764 5
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcchhHHHHHHHHhcCCcHhHHHHHH
Q 048778 828 PSFE---SHCTVIQGLQSEGRNKQAKNLVSDLFRY-NGIEEKAAVLPYIEFLLTGDELGKSIDLL 888 (902)
Q Consensus 828 p~~~---~~~~l~~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~l 888 (902)
|+.. .....++.=.+.|+.+.|..+|....+. ++.-+...|...-..=.+.|+-+-..++|
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6543 2334455667889999999999886544 55566778888887788889844433333
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.57 E-value=3.9e-09 Score=112.98 Aligned_cols=486 Identities=14% Similarity=0.086 Sum_probs=302.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLING---YCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKA 427 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 427 (902)
.+..+++..-+.....++...+..++..+-.+ |+..++.+++ +|-...+.-..|....+.+.+.-
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 44555666666666655555555555554432 3345555555 22222222222221111111110
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 428 VHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK 507 (902)
Q Consensus 428 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 507 (902)
+-.+.++....+..|...|..+.-+....|+++.+.+.|++....- .-....|+.+...|...|.-..|..+++.-...
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 1123333334455678888888888999999999999999987643 345678888888999999999999999887765
Q ss_pred CCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHH
Q 048778 508 GISPDEATITALAD-GH-CKNGKTGEALMIFERMVQN--TD--LKTPHVLNSFLDVLCKE-----------NKLKEEYAM 570 (902)
Q Consensus 508 ~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~ 570 (902)
...|+..+--.++. .| -+.+..++++.+-.++... +. ...+..|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 43354444433333 23 3456777777777766652 11 12334444444444321 224567777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 048778 571 FGKILKFGL-VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-G 648 (902)
Q Consensus 571 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 648 (902)
+++..+.+. .|++..|-+ --|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |
T Consensus 467 le~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 777776443 344444433 347788899999999999999865778889999999999999999999999888743 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHHh
Q 048778 649 VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN---------------------GC-----QL--NSNVYSALLAGLVS 700 (902)
Q Consensus 649 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------------g~-----~~--~~~~~~~l~~~~~~ 700 (902)
.|......-+..-..-++.+++......+..- |. .| ...++..+..-...
T Consensus 545 --~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 545 --DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred --hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 22211111222222345555555444333210 00 11 12233333322222
Q ss_pred cC---CcCCccccccccCCCCCCCCCcCC-cchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 701 SN---KASGVLSISTSCHSDAGSSRLEHD-DDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 701 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+ ..+..+.-++.. .++...-.. ...|...+..+.+.+..++|...+.++.+..|-....|+..+..+...|+
T Consensus 623 ~~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred hhhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 22 111111111000 000000000 22333445556677888899989999998888888899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH--HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE--FMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
+++|.+.|..++. +.|+.+- ..++.++.+.|+..-|.. ++..+++. +|+ .+.|..++.++.+.|+.++|.+
T Consensus 700 ~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 700 LEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999988 6788777 899999999998777777 88888885 564 5899999999999999999999
Q ss_pred HHHHHHhCC
Q 048778 852 LVSDLFRYN 860 (902)
Q Consensus 852 ~~~~~~~~~ 860 (902)
-|+-+.+..
T Consensus 776 cf~aa~qLe 784 (799)
T KOG4162|consen 776 CFQAALQLE 784 (799)
T ss_pred HHHHHHhhc
Confidence 999886654
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=8.3e-12 Score=134.64 Aligned_cols=282 Identities=9% Similarity=0.053 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPHVLNSF-LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYT--ILVDGLFRAGNIALA 602 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A 602 (902)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666665555443321 112222222 23335566666666666666542 33332221 224455666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 048778 603 MSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-------ITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666653 334555666666666666666666666666655432221 1222222222233334444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh
Q 048778 676 VSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES 755 (902)
Q Consensus 676 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 755 (902)
++...+. .+.+......+...+...| +.++|.+.+++..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g---------------------------------------~~~~A~~~L~~~l~ 291 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECD---------------------------------------DHDTAQQIILDGLK 291 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHHHh
Confidence 4444321 2335555566666666666 77777777777766
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 756 CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
. ++++... +..+....++.+++++..++..+ ..|++.. ..++..|...|++++|.+.|+.+.+. .|+...+
T Consensus 292 ~-~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~ 364 (398)
T PRK10747 292 R-QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDY 364 (398)
T ss_pred c-CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 3 3344222 22233344677777777777766 3355444 66677777777777777777777663 5777676
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
..++.++.+.|+.++|..++++.+..
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777777777776543
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.3e-11 Score=117.89 Aligned_cols=290 Identities=15% Similarity=0.190 Sum_probs=215.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV------HTYTVIINGLCQRGRF 634 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 634 (902)
..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456788888888887632 224555667788888888888888888888763 443 2344566778889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcCCcccc
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN----VYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+.|+.+|..+.+.| .--......|+..|-...+|++|++.-+++.+.+-.+... .|.-|...+....
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-------- 194 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-------- 194 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--------
Confidence 99999999998765 4456778889999999999999999999888765444321 2333333333333
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+++.|...+.++.+.+|....+-..+++.....|+++.|++.++.+.+.
T Consensus 195 -------------------------------~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 195 -------------------------------DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred -------------------------------hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999985
Q ss_pred CCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 791 GVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 791 ~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
+ |+-.. ..|..+|.+.|+.++...++.++.+. .+.......+.+......-.++|..++.+-+.. .|+...
T Consensus 244 n--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 244 N--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred C--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 4 55443 88999999999999999999999875 344444445555444444456677666664443 567666
Q ss_pred HHHHHHHHhc---CCcHhHHHHHHHHHHhcCcccCC
Q 048778 868 VLPYIEFLLT---GDELGKSIDLLNLIDQVHYRQRP 900 (902)
Q Consensus 868 ~~~l~~~~~~---~g~~~~a~~~l~~~~~~~~~~~~ 900 (902)
.+.+++..+. .|.+.+...+++.|...-.+..|
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 7777776543 57788888889988877666555
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.5e-10 Score=119.10 Aligned_cols=503 Identities=10% Similarity=0.018 Sum_probs=287.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHH
Q 048778 200 YRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLC 279 (902)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 279 (902)
+..+++-+..+.++..|.-+-+++...+..|+. ---+..+++-.|+++.|..+...-.- ...|..+......++.
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHH
Confidence 444444455566677777777777666544443 33466777777888888777765432 2467778888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 048778 280 EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359 (902)
Q Consensus 280 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 359 (902)
+..++++|..++..-. +.-++..|-.-=. ...-..+.+. ++... ......+-.-...|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHHHHHH
Confidence 8888888888876321 1111111100000 0000001111 00000 0001111111123444456667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 048778 360 MCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVD-GG 438 (902)
Q Consensus 360 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~-~g 438 (902)
-|.+.... |...+..+...-.. .+-.+.+.++.+... |..+ -.+.-.+-++.+-++.. ..
T Consensus 163 ~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l----~~a~---------~~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 163 KYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESL----DLAM---------LTKEDVERLEILYELKLCKN 223 (611)
T ss_pred HHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcc----cHHh---------hhhhHHHHHHHHHHhhhhhh
Confidence 66666553 44444333221111 112222222222221 1110 00011111111111110 00
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 439 LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITA 518 (902)
Q Consensus 439 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 518 (902)
.... ...+.++ +.+. +...+........+-+...+++.+..++.+...+.. ++....+..
T Consensus 224 ~n~~---------~~~r~~~--------~sl~--~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 224 RNEE---------SLTRNED--------ESLI--GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred cccc---------ccccCch--------hhhh--hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 0000 0000000 1111 123344444444555555666666666666666552 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 048778 519 LADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAG 597 (902)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 597 (902)
-|.++...|+..+-..+-.++.+. .+..+.+|-++.-.|...|+.++|++.|.+.... .|. ...|-.+.+.|+-.|
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcc
Confidence 445566666655555555555553 3345566777777777777777777777766542 222 456788888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVS 677 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 677 (902)
..++|+..+..+.+. ++-...-+--+.--|.+.++.+.|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 889998888877663 12122223344555778889999999999888753 5677888888888888899999999998
Q ss_pred HHHHC--CCCC----CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 678 FMVAN--GCQL----NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 678 ~m~~~--g~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
..+.. ...+ -..+++.|...|.+.+ .+++|+..++
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---------------------------------------~~~eAI~~~q 479 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---------------------------------------KYEEAIDYYQ 479 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHh---------------------------------------hHHHHHHHHH
Confidence 88732 1111 2346777888888888 9999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIG 803 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~ 803 (902)
+.+...|.+..++.+++..|...|+++.|++.|.+++. +.|++.. ..++.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 99999999999999999999999999999999999988 8899866 54444
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.5e-09 Score=104.86 Aligned_cols=502 Identities=12% Similarity=0.051 Sum_probs=300.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048778 312 ALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA 391 (902)
Q Consensus 312 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 391 (902)
-+....++..|+.+++.-...+-+-...+---+..++.+.|++++|...+.-+.+. -.++...+-.|.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34455667777777665543322222223333556777888999998888887764 34566666667766667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 392 AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSI 471 (902)
Q Consensus 392 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 471 (902)
|..+-....+ +......|.....+.|+-++...+.+.+.+.- .---+|.......-.+++|++++.+...
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777654322 34445556666677888888777777765421 1222344444455678899999999886
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 048778 472 FGLVPDGFTFTSII-DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHV 550 (902)
Q Consensus 472 ~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (902)
. .|+....|.-+ -+|.+..-++-+.++++--... ++-+....+.......+.=.-..|..-.+++...+...
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 5 35555555443 3567788888888888877765 23344445544444333333333444444444432211
Q ss_pred HHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 551 LNSFLDVLCKEN-----KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 551 ~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
...+.-+|+.+ +-+.|++++-.+.+ +.|.. --.|+--|.+.+++++|..+.+++.- ..|-......+.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 22344455443 44677777776665 23332 22344457889999999998887642 233333333222
Q ss_pred HHH-Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 626 NGL-CQ----RGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 626 ~~~-~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.+- .+ .....-|.+.|+-.-+.+..-| ...-.++..++.-..++++.+-+++.....-...|...+ .+..+.+
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 221 11 1123455555554444444433 334456666677777888888888777654222333333 4556666
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIV 778 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 778 (902)
..| ++.+|.++|-.+.... .++......|+++|.+.|+.+
T Consensus 405 atg---------------------------------------ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 405 ATG---------------------------------------NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred Hhc---------------------------------------ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 666 9999999998877655 344445567788999999999
Q ss_pred HHHHHHHHHHHcCCCchH-hH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAK-AI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
-|..++-++-. |.+ .. ..++..|.+.+.+--|.+.|+.+.. .+|+++.| +|+......++..
T Consensus 446 lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW---------eGKRGACaG~f~~ 510 (557)
T KOG3785|consen 446 LAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW---------EGKRGACAGLFRQ 510 (557)
T ss_pred HHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc---------CCccchHHHHHHH
Confidence 99888766532 333 33 6677788899998888888888765 37777765 4666677777777
Q ss_pred HHhCCCCCcch-hHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 856 LFRYNGIEEKA-AVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 856 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+......|-+. .....+ .+++..-..+|.-+++.|.++
T Consensus 511 l~~~~~~~~p~~~~rEVv-hllr~~~nsq~E~mikvvrkw 549 (557)
T KOG3785|consen 511 LANHKTDPIPISQMREVV-HLLRMKPNSQCEFMIKVVRKW 549 (557)
T ss_pred HHcCCCCCCchhHHHHHH-HHHHhCCCchHHHHHHHHHHH
Confidence 65544333322 222222 344444445666666666554
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.8e-07 Score=98.17 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIAD-GFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGH 242 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (902)
.|-..+..+.++|++..-...|++.... -+.-....|...+.-....+-.+-+..+++.-++. ++..-+-.|.-+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555555555666666666666654432 22233345555555555555555555555555543 222244445555
Q ss_pred hccCCHHHHHHHHHHhh
Q 048778 243 CRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 243 ~~~g~~~~A~~~~~~m~ 259 (902)
++.+++++|.+.+..+.
T Consensus 180 ~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL 196 (835)
T ss_pred HhccchHHHHHHHHHhc
Confidence 55555555555555554
No 58
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4.5e-07 Score=99.54 Aligned_cols=343 Identities=13% Similarity=0.157 Sum_probs=199.3
Q ss_pred HHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHH-----------------
Q 048778 498 NGFFGLMVKKGI--SPDEATITALADGHCKNGKTGEALMIFERMVQNTD--LKTPHVLNSFLD----------------- 556 (902)
Q Consensus 498 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~----------------- 556 (902)
..+.++....++ ..|+...+..+.++...+...+-+++++++.-.+. ..+...-|.|+-
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 456666665543 23666677778888888888888888888764311 111111121211
Q ss_pred ----------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 557 ----------VLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 557 ----------~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
.....+-+++|..+|++.- .+....+.|+. ..+.++.|.+.-++. .....|..+..
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAK 1112 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHH
Confidence 1222333444555544432 13333333332 234444454443332 23467888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
+-.+.|.+.+|++-|-+ ..|+..|..+++...+.|.|++-.+++....++.-+|...+ .|+-+|.+.++..+
T Consensus 1113 AQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHH
Confidence 98999999988876643 24778899999999999999999999988888766775543 57778888773221
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
.-+. -.++..-.....++.++..+.++.|.-+|.... .|..|+..+...|.+..|.....+
T Consensus 1185 lE~f-----------i~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1185 LEEF-----------IAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHH-----------hcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1100 012222333445555666666666666665443 366677777777777777666555
Q ss_pred HHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcch
Q 048778 787 IMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKA 866 (902)
Q Consensus 787 ~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 866 (902)
+-. ...+..+..+|...+.+.-|. |-..++....+-...++.-|...|-++|-+.+++.. .|.+-..+
T Consensus 1246 Ans-----~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~--LGLERAHM 1313 (1666)
T KOG0985|consen 1246 ANS-----TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG--LGLERAHM 1313 (1666)
T ss_pred ccc-----hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh--hchhHHHH
Confidence 421 111144555565554443321 211122223345556777788889999999888886 44444444
Q ss_pred hHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 867 AVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 867 ~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..++=+..++..=+++.-.+.++..+.
T Consensus 1314 gmfTELaiLYskykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444445555555566666666665543
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=4.6e-09 Score=110.16 Aligned_cols=426 Identities=13% Similarity=0.060 Sum_probs=211.2
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048778 385 KQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464 (902)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 464 (902)
..+++...+++.+.+.+. .+-...|.....-.++..|+.++|....+......+ .+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555542 122223333333345556666666666666555433 445566666655666667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNT- 543 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 543 (902)
.|......+ +.|...+..+.-.-.+.++++........+.+.. +.....|..+..++.-.|+...|..++++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777766654 4456666666656666667766666666666542 2245566666666666777777777777666553
Q ss_pred CCCChhhHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048778 544 DLKTPHVLNSFL------DVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN 617 (902)
Q Consensus 544 ~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 617 (902)
..|+...+.... ....+.|..++|.+.+..-... +.-....-.+-.+.+.+.+++++|..++..++.. .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 234444443322 2334556666666665544321 1111222233445566777777887777777775 355
Q ss_pred HHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 618 VHTYTV-IINGLCQRGRFKEAE-MLLFKMFDLGVSPNHITYSILVRAHASTGR-LDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 618 ~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
..-|.. +..++.+-.+.-++. .+|....+. .|....-..+--......+ .+..-+++..+.++|+++-.....+|
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL 329 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH
Confidence 444433 344443333333333 444444332 1221111111111111122 23333455556666665432222222
Q ss_pred -------------HHHHHhcCCcCCccccccccCCCCCC-CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 695 -------------LAGLVSSNKASGVLSISTSCHSDAGS-SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 695 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+..|...-.. ...+... +.+. ....+....+..+++.+-+.|+++.|...++.++..-|.-
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~---~~~f~~~--D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSG---TGMFNFL--DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhccc---ccCCCcc--cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 1122111100 0000000 0000 0111112344455555666666666666666666554555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+..|..-++.+...|.+++|...++++.+.. .||... ..-+.=..+.++.++|.++.....+.|
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 5555555666666666666666666665521 233333 244444455666666666666655443
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-08 Score=108.68 Aligned_cols=440 Identities=14% Similarity=0.074 Sum_probs=239.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 048778 327 DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKP 406 (902)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 406 (902)
.++....+..+..+|..+.-++..+|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-......|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33333345557777777777788888888888888877653 22255667777777888888777888777665543334
Q ss_pred CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 048778 407 NIRTYNELMEGLC--RMNKSYKAVHLLKRVVDG--GL--FPDEITYNILVDGFCRE-----------GQLDIALKIFNSM 469 (902)
Q Consensus 407 ~~~t~~~li~~~~--~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m 469 (902)
+..+--.++...| +.+..+++++.-.++... +. ......|-.+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 4444333333333 346666666666665551 11 11233344444344321 1234566666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048778 470 SIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPH 549 (902)
Q Consensus 470 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (902)
.+.+ +.|..+...+.--|+..++++.|....++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|..
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~ 548 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHV 548 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhh
Confidence 6554 223333333333455666777777777777776555567777777777777777777777777655431 11111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA--GCPPNVHTYTVIING 627 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 627 (902)
....-+..-..-++.+++......++.. |... .+....++-....+....+.-. ...-...++..+..-
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111122222345555655555554421 0000 0000111111112222211110 000011122222211
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVS--PN------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
....+ +.+..-.. +...-+. |+ ...|......+.+.++.++|...+.+..+. .+-....|......+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 11110 00000000 1111111 22 234555666677778888887777777642 2224445555555555
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..| +.++|.+.|..++..+|.+..+..+++.++.+.|+..-
T Consensus 696 ~~~---------------------------------------~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 696 VKG---------------------------------------QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHH---------------------------------------hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 555 88888888888888888888888888888888887766
Q ss_pred HHH--HHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 780 ADR--IMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 780 A~~--~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|.. ++..+++ +.|+... ..++..+.+.|+.++|.+.|..+.+
T Consensus 737 a~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 737 AEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 666 7888877 4454433 7888888888888888888887765
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.2e-09 Score=103.74 Aligned_cols=451 Identities=12% Similarity=0.057 Sum_probs=284.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChh
Q 048778 206 ALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLD 285 (902)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (902)
-+...+++..|+.+++.-...+-.-...+-.-+..++.+.|++++|..++..+.+ ...++...+-.+.-++.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHH
Confidence 3445667777777777665544333334444566788888999999999988776 34566677777777777778888
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 365 (902)
+|..+-....+ ++..-..|.+.--+.++-++-..+.+.+... ..---+|.......-.+.+|.+++.+.+
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877655432 3333344455556778877777777776542 1223334444444456899999999998
Q ss_pred HCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048778 366 QDGHFPGVVTYNVL-INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEI 444 (902)
Q Consensus 366 ~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 444 (902)
..+ |+....|.. .-+|.+..-++-+.++++-.... ++-+....|.......+.=+-..|..-...+.+.+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 753 444555543 35677888888888888887765 22234445555444444333333444444544433211
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 445 TYNILVDGFCRE-----GQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519 (902)
Q Consensus 445 ~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 519 (902)
| ..+.-+++. .+-+.|++++-.+.+. -+.+-..|+-.|.+.+++.+|..+.+++... .|-......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 1 123333433 3446788877766643 2334455667788999999999988776432 3333333333
Q ss_pred HHHHHhcC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 520 ADGHCKNG-------KTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVD 591 (902)
Q Consensus 520 i~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (902)
+ +...| ...-|...|+-.-+.+..-|. ..-.++...+.-..++++.+..++.+...-...|...+| +..
T Consensus 325 v--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQ 401 (557)
T KOG3785|consen 325 V--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQ 401 (557)
T ss_pred H--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHH
Confidence 2 23333 244566666665555443333 234556667777778999999999888765555666665 688
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTY-TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHI-TYSILVRAHASTGRL 669 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~ 669 (902)
+++..|++.+|.++|-......++ |..+| ..|.++|.+.++.+.|.+++-++-. +.+.. ....+.+-|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999877654433 44455 4567888999999988877655432 22333 334456678888998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVY 691 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~ 691 (902)
--|-+.|+.+.. ..|++..|
T Consensus 478 yyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHhhhHHHc--cCCCcccc
Confidence 888888888775 46766655
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=7.9e-10 Score=109.54 Aligned_cols=284 Identities=9% Similarity=0.036 Sum_probs=171.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048778 491 LGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAM 570 (902)
Q Consensus 491 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (902)
.|++.+|.+...+-.+.+-. ....|..-+.+-...|+.+.+-.++.+..+....++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46777777777666655433 23344444555566677777777777776653344555555566666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 571 FGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV-------HTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
.+++.+.+. .+........++|.+.|++.....+...|.+.|.-.|. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777666542 24556666777777777777777777777776654443 2455555555555545554455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCC
Q 048778 644 MFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 644 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
.-.. .+.++..-.+++.-+.+.|+.++|.+++++..+++..|.. ..++ .+.+-+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~--------------------- 308 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPG--------------------- 308 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCC---------------------
Confidence 5433 2445556666677777777777777777777776666551 1111 222333
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSII 802 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~ 802 (902)
+.+.-.+..++..+..|.++..+.+|+..|.+.+.|.+|.+.|+.+++ ..|+... ..++
T Consensus 309 ------------------d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la 368 (400)
T COG3071 309 ------------------DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELA 368 (400)
T ss_pred ------------------CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHH
Confidence 555555666666666666666666677666666666666666666665 3455444 5555
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 048778 803 GCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~ 822 (902)
+++.+.|+.++|.+..++.+
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 369 DALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 55555555555555555544
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=1.2e-07 Score=99.83 Aligned_cols=600 Identities=14% Similarity=0.092 Sum_probs=330.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHH
Q 048778 246 NDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSL 325 (902)
Q Consensus 246 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 325 (902)
+.+...++..+.+.+ +++....|.....-.++..|+-++|.+..+.-.+..+. +.+.|.++.-.+....++++|++.
T Consensus 21 kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 445555555555555 33334444444444456667777777766665554333 556666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-C
Q 048778 326 FDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRT-C 404 (902)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 404 (902)
|......+.. |...+.-+.-.-.+.|+++.....-.+..+... .....|..+..++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777765432 666666666666677777777777666666422 245667777777777888888888887776553 2
Q ss_pred CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048778 405 KPNIRTYNELM------EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG 478 (902)
Q Consensus 405 ~p~~~t~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (902)
.|+...|.-.. ......|..++|++.+..-... +......--+-...+.+.+++++|..++..+... .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 45555443332 2334567777777666554332 1112222233455677888888888888888876 3666
Q ss_pred HHHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 479 FTFTSII-DGLCKLGKPELAN-GFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLD 556 (902)
Q Consensus 479 ~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (902)
..|...+ .++.+-.+.-++. .+|....+.-.. .......=++......-.+...+++..+.+.|+++ ++..+..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 5555444 3443333333443 555555543111 11000111111111222333445566666666533 2333333
Q ss_pred HHHhcCChhHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-
Q 048778 557 VLCKENKLKEEYAMFGKIL----KFG----------LVPSVVTY--TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH- 619 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 619 (902)
.|-.-...+--.++...+. ..| -+|....| -.++..|-+.|+++.|...++....+ .|+.+
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 3322221111111111111 110 14555544 44677788999999999999999875 66654
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.|..-.+.+...|++++|..++++..+.+ .+|...=.--+.-..++.+.++|.++.....+.|. +....-.-+.+.+
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHH
Confidence 66667788999999999999999999876 67776655677778899999999999998887664 2222111111111
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CC----------CHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG------GS----------TTDF 763 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~----------~~~~ 763 (902)
-. ...++.+.+++++.+|.+-|..+.+.. .- ...+
T Consensus 484 f~-----------------------------~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrs 534 (700)
T KOG1156|consen 484 FQ-----------------------------LEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRS 534 (700)
T ss_pred Hh-----------------------------HhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHH
Confidence 00 011233344445555554444443321 11 1222
Q ss_pred HHHHHHH---HHhcCC----HHHHHHHHHHHHHcC-CC-chHhH-HHHHH----HHHc-cCChHHHHHHHHHHHH-----
Q 048778 764 YNFLVVE---LCRAGR----IVEADRIMKDIMKSG-VF-PAKAI-TSIIG----CYCK-ERKYDDCLEFMNLILE----- 823 (902)
Q Consensus 764 ~~~l~~~---~~~~g~----~~~A~~~~~~~~~~~-~~-p~~~~-~~l~~----~~~~-~g~~~~A~~~~~~~~~----- 823 (902)
|.-|... +...-. ...|+++|-++.+.. .. +.... ..+.. ...+ ..+-.+|..--+.+.+
T Consensus 535 Yv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~ 614 (700)
T KOG1156|consen 535 YVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKE 614 (700)
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333321 111111 346777887776642 00 11111 22221 1111 1122233332222221
Q ss_pred ----cCC--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 824 ----SGF--VPSFESHCTVIQGLQSEGR-NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 824 ----~~~--~p~~~~~~~l~~~l~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.|. +||.. .++.-+.+..+ .+||.+++......+.. ...++..-...|.+.|+..-|.+.+++.....
T Consensus 615 ~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~ 689 (700)
T KOG1156|consen 615 AKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYRKGKFLLALACLNNAEGIH 689 (700)
T ss_pred hccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 221 23333 45555666555 78899999887555432 34455444566888999999999888876554
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=5.9e-10 Score=106.75 Aligned_cols=289 Identities=15% Similarity=0.108 Sum_probs=197.6
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHH
Q 048778 281 VGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN---AHTYTVLIDRLCREGKIDEA 357 (902)
Q Consensus 281 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A 357 (902)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..|.|+++++.+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57789999999999885222 445566788889999999999999999887621111 23445567788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 358 NGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNI----RTYNELMEGLCRMNKSYKAVHLLKR 433 (902)
Q Consensus 358 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~ 433 (902)
+.+|..+.+.|. --......|+..|-+..+|++|++.-+++.+.+-.+.. ..|.-|...+....++++|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999987532 23456778899999999999999999988887644432 2345555555667788888988888
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 434 VVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDE 513 (902)
Q Consensus 434 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 513 (902)
..+... ..+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 887543 233333446677888888888888888888775433445667778888888888888888888877632 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 048778 514 ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKE---NKLKEEYAMFGKILK 576 (902)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 576 (902)
..-..+.+.-....-.+.|...+.+-+.. .|+...+..+++..... |...+-...++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333433333344445555444443332 37777777777665432 334455555555553
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=9.1e-07 Score=97.26 Aligned_cols=304 Identities=11% Similarity=0.096 Sum_probs=168.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMS 604 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (902)
..+.+++|..+|++.- .+....+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|.+.+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 3445566666666542 22333333332 2344555555444332 34566666666666676666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048778 605 MIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC 684 (902)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 684 (902)
-|-+. .|...|..+++...+.|.+++-.+++....+..-.|... +.|+-+|.+.++..+-.+++ .
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~ 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------A 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------c
Confidence 55432 245566667777777777777776666665544444443 35666666666666655443 3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHH
Q 048778 685 QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFY 764 (902)
Q Consensus 685 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 764 (902)
-||......+.+-|...+.++.+.-..+. .--|.+++.++...|++..|...-+++ .+..+|
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktW 1252 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTW 1252 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHH
Confidence 45555555555555555543333222211 112334455556666888888776665 467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFP--AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ 841 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~ 841 (902)
.....++...+.+.-|. -.|+.- -... .-++.-|-..|-++|-+.+++..+... ......|..++-.|.
T Consensus 1253 K~VcfaCvd~~EFrlAQ-------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHhchhhhhHHH-------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 98888887776655443 233221 1111 678899999999999999998876321 122344455554453
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 842 SEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
+ =+.++-.+.++-....-.. -.+++++-...-|.|..=++..
T Consensus 1325 k-ykp~km~EHl~LFwsRvNi------pKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1325 K-YKPEKMMEHLKLFWSRVNI------PKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred h-cCHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3444444444433222111 1346666666677776655543
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.5e-09 Score=107.53 Aligned_cols=285 Identities=10% Similarity=0.086 Sum_probs=168.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSM 605 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (902)
.|++..|+++..+-.+.+..| ...|..-..+-...|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766654322 2334444455566677777777777776643344555666666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 606 IEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-------ITYSILVRAHASTGRLDHAFKIVSF 678 (902)
Q Consensus 606 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 678 (902)
.+++.+.+ +-+.........+|.+.|++.+...++.+|.+.|+-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777654 445566667777777777777777777777776654443 2344444444444444443344444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-
Q 048778 679 MVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG- 757 (902)
Q Consensus 679 m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 757 (902)
..++ .+.++..-.+++.-+..+| +.++|.++.++.++.+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~---------------------------------------~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLG---------------------------------------DHDEAQEIIEDALKRQW 294 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcC---------------------------------------ChHHHHHHHHHHHHhcc
Confidence 4332 2333444445555555555 7777777777766665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCT 835 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 835 (902)
.+. ...+ ....+-++.+.-++..++..+. .|+... ..|+..|.+.+.+.+|.++++...+. .|+..+|..
T Consensus 295 D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~ 366 (400)
T COG3071 295 DPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAE 366 (400)
T ss_pred Chh---HHHH-HhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHH
Confidence 333 1111 1233445555555555555442 233323 66777777777777777777766653 566677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+++++.+.|+.++|.+..++.+..-
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Confidence 7777777777777777777665443
No 67
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=4.2e-07 Score=100.09 Aligned_cols=663 Identities=12% Similarity=0.006 Sum_probs=367.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048778 103 CYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAY 182 (902)
Q Consensus 103 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 182 (902)
.+...++..++..+.....+..|...++...+... + +.+|.+.|+...+.+-. +..++-.....|++...+++|.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~---D-m~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD---D-MKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---H-HHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHH
Confidence 34566777777777777777788777777765432 3 66799999988876543 6678888999999999999999
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 183 AVFVKLIADGFVLSA--IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 183 ~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
.+.-..-+.. +.-. ..|..+.-.|...++...|..-|+...+.. +.|...|..+..+|-++|++..|.++|++...
T Consensus 547 ~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 547 EICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 9844333221 1111 223334445678888999999999888775 55788899999999999999999999998875
Q ss_pred cCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048778 261 EASYRPNSV-TFTTLIHGLCEVGRLDEAFSLKDEMCEK------GWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKR 333 (902)
Q Consensus 261 ~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 333 (902)
..|+.. .---.....|..|.+.+|++.+...... +..--..++..+...+...|-...|...++.-++.
T Consensus 625 ---LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~- 700 (1238)
T KOG1127|consen 625 ---LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES- 700 (1238)
T ss_pred ---cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-
Confidence 244432 2222233457889999999988876543 11112233333333344444444444444443321
Q ss_pred CCCCHHHHHHHHHHHHHcC-C---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHhCC
Q 048778 334 CKPNAHTYTVLIDRLCREG-K---IDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI---I---AAFELLALMEKRT 403 (902)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g-~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~~ 403 (902)
..+++++..+... . ...|..+|-... .. .|+......|..-+-+.+.. + -+.+.+-.-..
T Consensus 701 ------f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 701 ------FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred ------HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 1111222211100 0 122333333332 11 12222222222212222222 1 01111111111
Q ss_pred CCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 404 CKPNIRTYNELMEGLCR----MN----KSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLV 475 (902)
Q Consensus 404 ~~p~~~t~~~li~~~~~----~g----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (902)
...+..+|..+...|.+ .+ +...|...+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11223444444433333 11 2245666676666532 2455667666544 66678888877776665543 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCCCChhhH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV--Q--NTDLKTPHVL 551 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~~~ 551 (902)
....+|..+.-.+.+..+++.|...|....... +.|...|.-........|+.-++..+|..-. . .|-.++..-+
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 567788888888888899999999998887763 2355556555555556777777777776521 1 1223333333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILK---------FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPNVHTY 621 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~ 621 (902)
-+........|+.++-+...+.+.. .+.+.+...|.+.....-+.+.+..|.++..+.... ...-+..+|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333444455555544333332221 134445667777777667777777777766655431 012344444
Q ss_pred HH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHH
Q 048778 622 TV----IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG-CQLNS-NVYSALL 695 (902)
Q Consensus 622 ~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~-~~~~~l~ 695 (902)
+. ..+.++..|.++.|...+...-. ..+.....+-+.. .-.|+++++.+.|+++..-. -..+. .....++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 43 33445556666655544332211 1122222222222 23478888888888877521 11121 1222222
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
-.....+ ..+.|...+-+.....+++..+...|.-.+.-..
T Consensus 1083 ~~~g~~~---------------------------------------~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~ 1123 (1238)
T KOG1127|consen 1083 VCMGLAR---------------------------------------QKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDA 1123 (1238)
T ss_pred HHHhhcc---------------------------------------cchHHHHHHHHHHHhCccchhhHHHHHHHHHHhh
Confidence 2333333 6778888888888888888888887777666655
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTV 836 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 836 (902)
+-.....+.+++.+. ++..... ..+-..|...|+-.-..+.+++..-. .| ++..|..+
T Consensus 1124 da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1124 DAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLL 1186 (1238)
T ss_pred hhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 555444444444431 1111111 22333466778888888888888753 34 44555444
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.7e-10 Score=116.16 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..+...+...|++++|.+.++++++. .+.+...+..+...+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~------------------------------ 79 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLG------------------------------ 79 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcC------------------------------
Confidence 556677777888888888888888887763 1234566666777777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
++++|.+.+++.++..|.+...+..++..+...|++++|.+.++++.+....+.... ..++.++...|+
T Consensus 80 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 80 ---------ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred ---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 888888888888888888888888888888888888888888888876432233222 667888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
+++|...++++.+.. ..+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|+.++|..+.+.
T Consensus 151 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 151 FDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888888642 2245677788888888899999988888887762 33444555666777788888888888877
Q ss_pred HHhc
Q 048778 891 IDQV 894 (902)
Q Consensus 891 ~~~~ 894 (902)
+...
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 7543
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.5e-08 Score=100.27 Aligned_cols=294 Identities=13% Similarity=0.088 Sum_probs=215.6
Q ss_pred HhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhH
Q 048778 489 CKLGKPELANGFFGLMVKK-GISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKE 566 (902)
Q Consensus 489 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 566 (902)
+-.++...|...+-.+... -++-|......+.+.+...|+.++|+..|++.... .|+. .......-.+.+.|++++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 3345555555544444332 24556777778888888888888888888877652 1221 112222344567788887
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
...+...+.... .-....|-.-.......+++..|+.+-++.++.+ +-+...|..-.+.+...|+.++|.-.|+..+.
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 777777766421 1234445444555667889999999999988764 44555666667788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 647 LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL-AGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 647 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. +.+...|.-|+.+|...|++.||.-.-+...+. +..+..+...+. ..+.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp----------------------- 417 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP----------------------- 417 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc-----------------------
Confidence 64 567899999999999999999999887777653 344555554442 2221111
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC 804 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~ 804 (902)
.--++|.+++++.+...|.-..+-+.++..+...|+.++++.++++.+. ..||... ..|++.
T Consensus 418 ---------------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 418 ---------------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDI 480 (564)
T ss_pred ---------------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHH
Confidence 0458899999999999999999999999999999999999999999998 6788888 999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+...+.+.+|.+.|..++.. +|..
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 99999999999999999874 6654
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=9.6e-10 Score=124.20 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 564 LKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRA---------GNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR 633 (902)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (902)
+++|..+|++.++. .|+ ...|..+..++... +++++|...++++.+.+ +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45566666666552 232 33444444433311 22455566665555543 3344555555555555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCcccccc
Q 048778 634 FKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSIST 712 (902)
Q Consensus 634 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 712 (902)
+++|+..++++.+.+ +.+...+..+..++...|++++|+..++++++ ..|+. ..+..++..+...|
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g---------- 420 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHT---------- 420 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhcc----------
Confidence 666666666555543 33344555555555555666666666665554 23322 12222222233344
Q ss_pred ccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 713 SCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...++++++.. |.++..+..++.+|...|++++|.+.++++..
T Consensus 421 -----------------------------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-- 469 (553)
T PRK12370 421 -----------------------------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-- 469 (553)
T ss_pred -----------------------------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--
Confidence 5555666555555544 34444555555555556666666665555543
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
..|+... ..+...|...| ++|...++.+.
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 470 QEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred ccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 2233322 44444455444 35555555444
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.35 E-value=9.7e-07 Score=93.66 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=91.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCC
Q 048778 204 INALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGR 283 (902)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 283 (902)
+.+-.+.+.+..|..+.+.+.... ...-.|-.+..-|...|+++.|.++|.+.. .++-.|..|.++|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 334455566777777766655432 222235556667777777777777776543 24445667777777
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048778 284 LDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGK 363 (902)
Q Consensus 284 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (902)
+++|.++-++. .|.+.....|.+-..-+-+.|++.+|.+++-.+- .|+ ..|.+|-+.|..++..++.++
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 77777765543 2344445555555555666677777766653322 122 234556666666666555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048778 364 MLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLA 397 (902)
Q Consensus 364 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (902)
--.. .-..|...+..-|-..|+..+|.+-|-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 3211 011223333444444555555544443
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.3e-07 Score=98.50 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 598 NIALAMSMIEVMKLAGCPPN-VHTYTVIINGLCQRGRFKEAEMLLF--------KMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
.+..|.+++....+.. +-+ ..+...++......|+++.|++++. .+.+.+..|- +..++...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccC
Confidence 4677777777776653 222 3455566677788899999999988 5555554444 44566777788888
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 669 LDHAFKIVSFMVAN--GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 669 ~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
-+.|..++.+.++- .-.+......+++.- .+..-.+.|+.++|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~-----------------------------------aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMRE-----------------------------------AAEFKLRHGNEEEA 477 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHH-----------------------------------HhHHHHhcCchHHH
Confidence 77777777777641 011122222222211 11122233599999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
..+++++.+.+|+|..+...++.+|+.. +.+.|+.+-.++
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999987 577887776554
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=7.3e-10 Score=125.17 Aligned_cols=248 Identities=10% Similarity=0.043 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ---------RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
+.++|..+|++..+.. +.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3567777777777652 2234455555444332 233677777777777654 4456666677777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+++|...++++++. .| +...+..+...+...| ++++|.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G---------------------------------------~~~eAi 392 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAG---------------------------------------QLEEAL 392 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHH
Confidence 77777777777763 34 3455666666676666 777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
..++++++.+|.++..+..++..+...|++++|+..++++.+.. .|+... ..++.+|...|++++|...++++...
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~- 470 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ- 470 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-
Confidence 77777777776666555555555666777777777777766532 233222 55666677777777777777766543
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 826 FVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 826 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
.|+ ......++..|...| ++|...++++.+.. ..+....+..++ +.-.|+.+.+..+ +++.+.|+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccch
Confidence 333 244445555555555 46666666654431 222222232222 3334555555544 55555443
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=8.6e-10 Score=111.00 Aligned_cols=196 Identities=11% Similarity=0.053 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666665542 3344555556666666666666666666665543 3344555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
+...|++++|.+.+++..+....+ ....+..+...+...|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------------------------- 149 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG--------------------------------------- 149 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC---------------------------------------
Confidence 666666666666666665421111 2233333444444444
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+. .|+... ..++..+...|+.++|..+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555655555555555555555555555555555555555555555543 122111 334444445555555555444
Q ss_pred HH
Q 048778 820 LI 821 (902)
Q Consensus 820 ~~ 821 (902)
.+
T Consensus 228 ~~ 229 (234)
T TIGR02521 228 QL 229 (234)
T ss_pred HH
Confidence 44
No 75
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.7e-07 Score=100.54 Aligned_cols=423 Identities=14% Similarity=0.126 Sum_probs=224.5
Q ss_pred CHhhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CC
Q 048778 161 NYPCYSCLLM--SLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHG---------FC 229 (902)
Q Consensus 161 ~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------~~ 229 (902)
|..|-..++. -|+-.|..+.|.+..+-+.. ...|..+.+.|.+.++++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555543 45667888888777766543 3467788888888777777766665554210 01
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 230 LDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
++ .+-..........|.+++|..++.+-+. |..|=..|-..|.+++|+++-+.--+-.++ .||..-
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHH
Confidence 11 1222222233456777777777776654 333444555677778777776553332222 344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 389 (902)
..-+-..++.+.|++.|++.-.. --.++..|. .++.......+.+. |...|.-....+-..|++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 44555566777777777653211 111111111 11222222222222 334444444445567777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSM 469 (902)
Q Consensus 390 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 469 (902)
+.|+.++....+ |-.+++..|-.|+.++|-.+-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777776553 445666777778888877766553 34555566777787888888888777665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhH----------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 470 SIFGLVPDGFTFTSIIDGLCKLGKPEL----------------ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEAL 533 (902)
Q Consensus 470 ~~~g~~~~~~~~~~li~~~~~~g~~~~----------------A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (902)
.. +...|+.| +.+++++ |-++|++. |. -....+..|-+.|.+.+|+
T Consensus 994 qa---------fsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 994 QA---------FSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHH
Confidence 42 33333332 2222222 22222221 11 1122334566777777666
Q ss_pred HHHHHH--------Hh--CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 534 MIFERM--------VQ--NTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 534 ~~~~~~--------~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
++--+- +. .....|+...+...+.++...++++|..++-...+ |...+. +|+..+..--.
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vte 1125 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTE 1125 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhH
Confidence 542211 11 12335666777777777778888888777766554 222222 23333333333
Q ss_pred HHHHHHHH-CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 604 SMIEVMKL-AGCPPNVH----TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDH 671 (902)
Q Consensus 604 ~~~~~m~~-~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 671 (902)
++-+.|.- ++-.|+.. ....+...|.++|.+..|.+-|.+.-++ ..-++++.+.|+.++
T Consensus 1126 e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1126 EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 33333321 11233333 3455667777888887777666554321 123455556666554
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.31 E-value=3.9e-07 Score=100.41 Aligned_cols=576 Identities=13% Similarity=0.023 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 048778 213 VRAGEMFFCRVLKHGFCLD-THICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLK 291 (902)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 291 (902)
...|...|-+..+.. ++ ...|..|...|+...+...|.+.|+..-+ -...|...+....+.|....+++.|..+.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 444444444444432 22 34566666667666677777777777665 33455666777777777777777777763
Q ss_pred HHHHHCC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 048778 292 DEMCEKG-WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHF 370 (902)
Q Consensus 292 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 370 (902)
-..-+.. ...-...|....-.|...++...|..-|+...+..+. |...|..+..+|..+|++..|.++|.+.....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 2222210 0001111222333445666777777777777665433 66677777777777777777777777766532
Q ss_pred CCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------
Q 048778 371 PGVVTYN--VLINGYCKQGRIIAAFELLALMEKR------TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVD------ 436 (902)
Q Consensus 371 ~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~------ 436 (902)
|+. +|. -.....|..|.+.+|...+...... +..--..++..+...+...|-..+|...+++-++
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 221 222 1223455677777777776665432 1111122222333333333433344444443322
Q ss_pred -CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHHHCCC
Q 048778 437 -GGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---E---LANGFFGLMVKKGI 509 (902)
Q Consensus 437 -~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~ 509 (902)
.....+...|-.+- .|..+|-... .+ .|+......+..-+-+.+.. + -+.+.+-.-.+.
T Consensus 706 ~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-- 771 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-- 771 (1238)
T ss_pred HHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--
Confidence 11111222222111 1222222222 11 12222222222112122211 1 111111111111
Q ss_pred CCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 510 SPDEATITALADGHCK----N----GKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVP 581 (902)
Q Consensus 510 ~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 581 (902)
..+..+|..++..|.+ . .+...|...+++.++. ...+..+||.|.-. ...|++.-|...|-+-+... +.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~ 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PT 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-cc
Confidence 1123344444433332 1 1223556666655553 22445555655443 55566666666665554322 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCCCHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM--F--DLGVSPNHITYS 657 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~ 657 (902)
...+|..+.-.+.+..+++.|...|....... +-|...|..........|+.-++..+|..- . ..|-.++..-|.
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~ 927 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL 927 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHH
Confidence 45667666666777778888888888777653 556666766666666777777777776652 1 233345555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVAN---------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~---------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
+........|+.++-+...+++... +.+.+...|...+...-+
T Consensus 928 c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEh---------------------------- 979 (1238)
T KOG1127|consen 928 CATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEH---------------------------- 979 (1238)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHH----------------------------
Confidence 5555566666665544333332210 122223333333333333
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSI 801 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l 801 (902)
.+.+.+|.++..+++..- ..+.++--.+++.++..|.++.|..-+... |..+. ..+
T Consensus 980 -----------L~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~------~~evdEdi~ 1042 (1238)
T KOG1127|consen 980 -----------LEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE------WMEVDEDIR 1042 (1238)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc------chhHHHHHh
Confidence 335555555555443321 222333445566666677777555443332 22222 111
Q ss_pred HH--HHHccCChHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IG--CYCKERKYDDCLEFMNLILESG-FVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~--~~~~~g~~~~A~~~~~~~~~~~-~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.- +..-.|+++++.+.|+++...- -..+. .....++.+...+|..+.|...+-+....
T Consensus 1043 gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1043 GTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 11 1234677888888888877421 11221 33455566666777777777777665444
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=3e-09 Score=113.72 Aligned_cols=236 Identities=17% Similarity=0.158 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-----G-CPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFD-----LGV- 649 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~- 649 (902)
..+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++.. .|-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555778888888888888888877653 2 133333 334477788999999999999999873 231
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 650 SPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN-----GCQL-NS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 650 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.|. ..+++.|..+|++.|++++|...+++..+- |..+ .. ..++.++..++..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~------------------- 339 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN------------------- 339 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-------------------
Confidence 121 456777888899999999999988887641 2121 22 23444555566666
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-----G---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSG-- 791 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 791 (902)
++++|..++++..+.- + .-..++..|+..|...|++++|.++|++++...
T Consensus 340 --------------------~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 340 --------------------EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred --------------------chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 8888887777765542 2 335689999999999999999999999997431
Q ss_pred ----CCchHhH--HHHHHHHHccCChHHHHHHHHHHHH----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 792 ----VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE----SGF-VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 792 ----~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+.... +.++..|.+.+++++|.++|.+... .|. .|+. .+|..|+..|...|++++|+++.+..+
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1222222 8899999999999999999987763 232 2443 888999999999999999999999875
No 78
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=3.2e-06 Score=89.82 Aligned_cols=384 Identities=15% Similarity=0.070 Sum_probs=195.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048778 177 LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 177 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (902)
++.+|..+|-+-. .-...+..|....++++|..+-+ ..|.+.=...-.+.+..+...|.-++|-++-+
T Consensus 546 kfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~ 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKE 613 (1636)
T ss_pred hhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence 5666666664321 11344556666677777776543 23323223334556666667777666655421
Q ss_pred HhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048778 257 VMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKP 336 (902)
Q Consensus 257 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 336 (902)
. +-.+ -+.|+.|.+.|.+-+|......-.. +..|......+..++.+..-++.|-.+|+.+..-
T Consensus 614 s---------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---- 677 (1636)
T KOG3616|consen 614 S---------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---- 677 (1636)
T ss_pred c---------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----
Confidence 1 1111 2356778888888777665422111 2234444444555555555566666666655421
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTY-NVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
...+..|-+-.-+.+|.++-+-.. +..+++. ......+...|+++.|..-|-+.. .....+
T Consensus 678 -----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kai 739 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAI 739 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHH
Confidence 122233333333445554433221 1111111 112233445566666655554332 122234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 048778 416 EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPE 495 (902)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (902)
.+......+.+|+.+++.+.++.. -..-|..+.+-|+..|+++.|.++|-+.- .++..|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 455556666777777766655422 22345555666677777777777665432 2445566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 496 LANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKIL 575 (902)
Q Consensus 496 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (902)
.|.++-.+.. |.......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..+..+++..+--
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 7766654433 2333445555555556666777776666644432 33 24566666666666665554432
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 576 KFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEML 640 (902)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (902)
.. .-..|...+..-|-..|++..|...|-+.-+ |...++.|...+.|++|.++
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 10 1122334445555566666666665544322 34445555555555555544
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=6.7e-12 Score=89.59 Aligned_cols=50 Identities=44% Similarity=0.903 Sum_probs=38.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 048778 266 PNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCD 315 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 315 (902)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 80
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=9.3e-10 Score=105.24 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=172.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHH
Q 048778 517 TALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT-YTILVDGLFR 595 (902)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~ 595 (902)
.-+..+|.+.|...+|.+.|+..++. .|-+.||-.|-..|.+..+++.|+.++.+-++. .|-.+| ...+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45667778888888888888777664 356667777778888888888888888777763 344444 3445666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
.++.++|.++|+...+.. +.++.....+..+|.-.++.+-|+.+++.+++.| ..+...|..+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888887763 5566666667777777888888888888888887 45777788888888888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 676 VSFMVANGCQLN--SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 676 ~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
|++....--.|+ ..+|..+.......| ++.-|.+.|+-+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iG---------------------------------------D~nlA~rcfrla 421 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIG---------------------------------------DFNLAKRCFRLA 421 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEecc---------------------------------------chHHHHHHHHHH
Confidence 887776433343 345555555444555 888899999888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+..++.+..+++.|+-.-.+.|++++|..+++.+.. +.|+-
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence 888888888899988888888899999888888877 44543
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-07 Score=94.35 Aligned_cols=305 Identities=13% Similarity=0.086 Sum_probs=222.9
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 509 ISPDEATITALADGH--CKNGKTGEALMIFERMVQN-TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 509 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
.+|...+...-+.++ +-.++...|...+-..... ....+......+...+...|+.++|...|++... +.|+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhh
Confidence 344444444444443 3445555555444443333 3455677788889999999999999999998875 2343222
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 586 -YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 586 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.....-.+.+.|++++...+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...|..-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 2222333467888888888888877642 2333445555555667788999999999888765 456777777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 665 STGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
..|+.++|.-.|+..+. +.| +...|..|+.+|...+ ++
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~---------------------------------------~~ 384 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK---------------------------------------RF 384 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc---------------------------------------hH
Confidence 99999999999998876 455 6788999999998888 99
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLV-VELC-RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
.||.-.-+...+.-|.+..++..++ ..+. ..-.-++|..++++.+. +.|+-.- ..++..+...|.++.++.+++
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999888888887788888888775 3332 22346889999999887 5676555 888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 820 LILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+.+.. -||......+++.+...+.+++|.+.|..+++.++.
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 98873 688888889999999999999999999998777654
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.7e-07 Score=97.32 Aligned_cols=415 Identities=12% Similarity=0.060 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CC-------CCCHHHHHHHHHHHHhcCChH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIAD-GF-------VLSAIDYRSVINALCKSGLVR 214 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~-------~~~~~~~~~ll~~~~~~~~~~ 214 (902)
++.|.+....++ +..+|..|.+.+++.++.+-|.-.+-.|... |. ..+..+-.-+...-...|.++
T Consensus 744 MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlE 817 (1416)
T KOG3617|consen 744 MDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLE 817 (1416)
T ss_pred HHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHH
Confidence 556666555555 5578999999999999999888777766432 10 111122222223335679999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 215 AGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 215 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 294 (902)
+|..+|.+-.+. ..|=..|-..|.+++|.++-+.-..- .=..||..-..-+-..++.+.|++.|++.
T Consensus 818 eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 818 EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999987764 33445677789999999988754431 22346666666677788899999988864
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH
Q 048778 295 CEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVV 374 (902)
Q Consensus 295 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 374 (902)
... -...+. |+. .+.....+..+.+. |...|.-....+-..|+++.|+.+|.....
T Consensus 885 ~~h----afev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 885 GVH----AFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred CCh----HHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 221 111111 111 11122222222222 344555555555566777777777766543
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C------CCChhhH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG--L------FPDEITY 446 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g--~------~~~~~~~ 446 (902)
|-++++..|-+|+.++|-++-++- -|....-.|.+.|-..|++.+|...|.+...-. + ..+...+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 556667777777777777665542 245555566677777777777777776654310 0 0011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--------HHH--CCCCCCHHHH
Q 048778 447 NILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGL--------MVK--KGISPDEATI 516 (902)
Q Consensus 447 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~--~~~~~~~~~~ 516 (902)
|. ...+...+.-.|-++|++..- -+...+..|-+.|.+.+|+++--+ ++. .....|+...
T Consensus 1014 nl--al~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1014 NL--ALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HH--HhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 10 011112233334444444321 011223356667776666654311 111 2234577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCH----HHHHHHHH
Q 048778 517 TALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK-FGLVPSV----VTYTILVD 591 (902)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~----~~~~~li~ 591 (902)
+...+.++...++++|..++-...+ |...+ .+|+..++.-..++-+.|.- ..-.|+. .....+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 8888888888899998888766554 22222 34444555444444444431 1122333 34566778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
.|.++|.+..|-+-|.+.=++ ...++++.+.|+.++
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 889999999998888765332 234677778887765
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=103.91 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
+.+..+|.+.|.+.+|.+.++..++. .|-..||..|-+.|.+..+...|+.++.+-.+. .+-|+....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34444555555555555555544443 344444555555555555555555555544443 122222223334444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
++.++|.++|+...+. .+.+.....++...|.-.+ +.+-|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~---------------------------------------~PE~A 343 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDN---------------------------------------NPEMA 343 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCC---------------------------------------ChHHH
Confidence 5555555555554432 1112222222222222222 45555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.+.|+++++.+..++..|..++-++.-.++++-++..|++++...-.|+... .+++......|++.-|.+.|+-.+.
T Consensus 344 lryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 344 LRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 5555555555544555555555444444555555555555544333333322 4444444455555555555554443
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 824 SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 824 ~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
. +|+ .+.++.++-.-.+.|+.++|..+++.+
T Consensus 424 ~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 424 S--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred c--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 2 222 244444444444555555555555444
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=8.2e-10 Score=101.14 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=136.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
+...|+...|..-++++++.+|.+..+|..++..|.+.|..+.|.+.|++++. +.|+... ++.++.+|..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCChHHH
Confidence 34444999999999999999999999999999999999999999999999999 6676665 9999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 815 LEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
...|+++.....-|. ..+|..++.|-.+.|+.+.|..++++.++....... ....+...+++.|++..|...++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 999999997322222 378888999999999999999999999888765443 445788889999999999999998877
Q ss_pred cCc
Q 048778 894 VHY 896 (902)
Q Consensus 894 ~~~ 896 (902)
+|.
T Consensus 202 ~~~ 204 (250)
T COG3063 202 RGG 204 (250)
T ss_pred ccc
Confidence 764
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=2.3e-09 Score=114.58 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDL-----G-VSPNHIT-YSILVRAHASTGRLDHAFKIVSFMVAN-----GC- 684 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~- 684 (902)
..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777999999999999999999988753 2 1344333 344788899999999999999999852 21
Q ss_pred CCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc-------
Q 048778 685 QLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC------- 756 (902)
Q Consensus 685 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 756 (902)
.|. ..+++.|...|.+.| ++++|...++++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~G---------------------------------------Kf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQG---------------------------------------KFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred CHHHHHHHHHHHHHHhccC---------------------------------------ChHHHHHHHHHHHHHHHHhhcc
Confidence 221 346677777888888 555555555444333
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHc---
Q 048778 757 G-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---GVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILES--- 824 (902)
Q Consensus 757 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~--- 824 (902)
. |.-...+..++..++..+++++|..++++..+. -+.++++ + ..|++.|.+.|++++|.+++++++..
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3 233445778888899999999999999987642 2334441 1 89999999999999999999999842
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 825 ---GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY----NG-IEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 825 ---~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
+..+. ...++.++..|.+.+++++|..+|.+.... |+ .|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11233 367788999999999999999998885422 22 223 44678888999999999999999988763
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.2e-07 Score=92.68 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 528 KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFG--------KILKFGLVPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (902)
...++..++....+........+.-..+......|+++.|.+++. .+.+.+..|-.+ .++...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 355566666665554333334455555666667777777777777 444444444433 3345556666665
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 600 ALAMSMIEVMKLA--GCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 600 ~~A~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
+.|..++.+.... .-.+.. .++..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 5566666555431 001111 223333333345677777777777777654 56777777777777765 556665
Q ss_pred HHHHH
Q 048778 674 KIVSF 678 (902)
Q Consensus 674 ~~~~~ 678 (902)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 55444
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.22 E-value=4.1e-07 Score=99.05 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGL 628 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (902)
++.-+...|...|++++|++++++.++. .|+ +..|..-...+-+.|++.+|.+.++.....+ .-|...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4455667777888888998888888874 455 6678888888889999999999988888765 44666666777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPNHI------T--YSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
.+.|++++|.+++......+..|-.. . ......+|.+.|++..|++.|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88899999999888887665433321 1 13456788888999888887777664
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=5.6e-07 Score=98.01 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
-+++|.++++.+.+..|.+..+|..--..|.+.|++-.|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 667888888888888888888888888888888888887776654
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.8e-11 Score=85.71 Aligned_cols=49 Identities=55% Similarity=0.978 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048778 371 PGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC 419 (902)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 419 (902)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=6.1e-09 Score=107.41 Aligned_cols=222 Identities=10% Similarity=-0.095 Sum_probs=162.9
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 594 FRAGNIALAMSMIEVMKLAG-CPPN--VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
...+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++.++.. +.+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34567788999998888642 2222 3568888888999999999999999999865 556889999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
+|...+++.++ +.| +..+|..+...+...| ++++|.+.
T Consensus 116 ~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g---------------------------------------~~~eA~~~ 154 (296)
T PRK11189 116 AAYEAFDSVLE--LDPTYNYAYLNRGIALYYGG---------------------------------------RYELAQDD 154 (296)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHH
Confidence 99999999997 456 4567777777788888 99999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc---C-
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES---G- 825 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~- 825 (902)
+++.++.+|.++.. ......+...++.++|++.+++.... ..|+.... ...+...|+..++ +.++.+.+. .
T Consensus 155 ~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~--~~~~~~lg~~~~~-~~~~~~~~~~~~~~ 229 (296)
T PRK11189 155 LLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW--NIVEFYLGKISEE-TLMERLKAGATDNT 229 (296)
T ss_pred HHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH--HHHHHHccCCCHH-HHHHHHHhcCCCcH
Confidence 99999998888732 22222344567899999999776542 22322212 3334446666554 355555421 1
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 826 -FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 826 -~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+.| ..+.|..++..+.+.|++++|+..|+++++..+.
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 112 2378899999999999999999999999877643
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=1e-08 Score=105.74 Aligned_cols=219 Identities=16% Similarity=0.014 Sum_probs=145.7
Q ss_pred hcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 560 KENKLKEEYAMFGKILKFG-LVPS--VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
..+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888877532 2222 3457777778888899999999888888864 4567788888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 637 AEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 637 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
|...|++..+.. +-+..+|..++.++...|++++|.+.+++..+. .|+..........+...+
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~-------------- 179 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKL-------------- 179 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccC--------------
Confidence 999988888753 334677788888888889999999999888863 454322111111122333
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---G-- 791 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-- 791 (902)
+.++|.+.+++.....+++... ....+...|+..++ +.++.+.+. .
T Consensus 180 -------------------------~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 180 -------------------------DPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred -------------------------CHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHH
Confidence 7888888887766543333222 23334445665544 344444421 1
Q ss_pred CCchHh-H-HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 792 VFPAKA-I-TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 792 ~~p~~~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+.|+.. . ..++..+.+.|++++|...|+++++.+
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 112222 2 778888889999999999999888754
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=8.8e-09 Score=94.53 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
..-|.-.|.+.|++..|.+-+++.++. .| +..+|..+...|.+.|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~G-------------------------------- 83 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLG-------------------------------- 83 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcC--------------------------------
Confidence 344555666677777777777776663 44 3456666666666666
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+.|.+.|+++++..|.+..++|..+..+|..|++++|...|+++...-.-+.... .+++.|-.+.|+.+
T Consensus 84 -------e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 84 -------ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred -------ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence 667777777777777777777777777777777777777777777765432222222 56666666777777
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 813 DCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
.|..++++.++. .|+ +.....++....+.|++-.|..++++....+. +........+..-...|+.+.+.+.=.
T Consensus 157 ~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 157 QAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777664 343 24555566666677777777777766654443 444333333344445566665554433
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2e-06 Score=89.13 Aligned_cols=435 Identities=13% Similarity=0.039 Sum_probs=230.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 048778 276 HGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355 (902)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (902)
.+.+..|+++.|+.+|-+....... |.+.|+.-..+|.+.|++++|++=-.+-++..+. -...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 4456677888888888777765433 6677777777788888887777666555544221 3566777777777777888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHH
Q 048778 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM-----EGLCRMNKSYKAVHL 430 (902)
Q Consensus 356 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li-----~~~~~~g~~~~A~~~ 430 (902)
+|..-|.+-++... .+...++.+..++. .+.+. +... -+...|..+. +.+...-.+ ..+
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~----~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~---~~~ 151 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAYL----EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAY---VKI 151 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhhh----HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHH---HHH
Confidence 88887777776532 24555555555551 11111 1100 0111111111 111111111 111
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCC-------CCCCHHHHHHHHHHHHhcCChhHHH
Q 048778 431 LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNS-----MSIFG-------LVPDGFTFTSIIDGLCKLGKPELAN 498 (902)
Q Consensus 431 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~ 498 (902)
+..... + |.. +..|.....+..|.-.+.. +...| ..|. .+.. ...
T Consensus 152 l~~~~~-~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~ 208 (539)
T KOG0548|consen 152 LEIIQK-N--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGF 208 (539)
T ss_pred HHHhhc-C--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCC
Confidence 111111 1 100 0111110001111111000 00000 0110 0000 000
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 499 GFFGLMVK-KGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF 577 (902)
Q Consensus 499 ~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (902)
....++.+ ....--..-...+.++..+..++..|.+.+....+.. .+..-++....+|...|.+.++.......++.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000 0000011224456666667777778888777777653 44445566667777777777777666665554
Q ss_pred CCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048778 578 GLVPSVVTYTI-------LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVS 650 (902)
Q Consensus 578 ~~~p~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 650 (902)
|.. ...-|+. +..+|.+.++++.|+..|.+.+.....|+.. .+....+++.+..+...-. .
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~ 354 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--N 354 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--C
Confidence 422 1222222 2335566677788888887766544344332 2223344444444444332 2
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 651 PNH-ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 651 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
|.. .-...-.+.+.+.|++..|+..|.+++... +.|...|.....+|.+.+
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~--------------------------- 406 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG--------------------------- 406 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh---------------------------
Confidence 332 112223666778888888888888888753 446677777777777777
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
.+..|+.-.+..++++|+....|..-+.++....+|++|++.|++.++. .|+..- ..+.+++..
T Consensus 407 ------------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 407 ------------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred ------------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888873 354443 555555554
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.9e-07 Score=92.96 Aligned_cols=438 Identities=11% Similarity=0.034 Sum_probs=249.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH
Q 048778 381 NGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-EITYNILVDGFCREGQL 459 (902)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~ 459 (902)
++.+..|+++.|+..|.+..... ++|.+.|+.-..+|.+.|++++|++=-.+-.+. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 56678899999999999988775 348889999999999999999998877776663 343 56788888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhc-------
Q 048778 460 DIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---ELANGFFGLMVKKG---ISPDEATITALADGHCKN------- 526 (902)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~------- 526 (902)
++|+.-|.+-++.. +.|...++-+..++...... -.--.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 45666677777666111000 00001111111000 000111122222221110
Q ss_pred ---CCHHHHHHHHHHHH-----hCCCCCChhhHHHHHHHHHhcCChh----HHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 048778 527 ---GKTGEALMIFERMV-----QNTDLKTPHVLNSFLDVLCKENKLK----EEYAMFGKILK-FGLVPSVVTYTILVDGL 593 (902)
Q Consensus 527 ---g~~~~A~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 593 (902)
..+..+...+.... ..+..+.+. ...+. .......++.+ ....--..-+-.+.++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~-----------~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILAS-----------MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCC-----------CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 00111111110000 000000000 00000 00000000000 00000111234556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhc
Q 048778 594 FRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS-------ILVRAHAST 666 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~l~~~~~~~ 666 (902)
.+..+++.|++.+....+.. -+..-++....+|...|.+.+....-....+.| .-...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777777777777776653 344445555666777777776666666655544 12222222 233455666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCC-cchhhhhhhhhhhhccHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHD-DDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 745 (902)
++++.|+.++++.+..--.|+...-.....--.+.+.. .. -+.+. .+.-...+..+++.|++..
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~---~a------------~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER---KA------------YINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH---HH------------hhChhHHHHHHHHHHHHHhccCHHH
Confidence 77777888887776544444433222211111111100 00 00011 1111223566777889999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|++.|.++++.+|.|...|...+-+|.+.|.+..|+.-.+..++ +.|+... ..=+.++....++++|.+.|...++
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998 5576655 5557778888899999999999988
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 824 SGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 824 ~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
. +|+. +....+.+++......+...++.++
T Consensus 455 ~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 L--DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred c--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 5 5754 5556666666543333334444444
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=1.6e-06 Score=84.13 Aligned_cols=314 Identities=13% Similarity=0.107 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-H
Q 048778 478 GFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL---ADGHCKNGKTGEALMIFERMVQNTDLKTPHVLN-S 553 (902)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 553 (902)
+.-..-+...+...|++..|+.-|....+- |+..|.++ ...|...|+...|+.=+.+.++. +||-..-. .
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333444555566666666666666666554 33333333 33555666666666666666552 34322111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR 633 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (902)
-...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-. .....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCc
Confidence 1234556666666666666666532 21100 000000000000000 01112223344556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccc
Q 048778 634 FKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTS 713 (902)
Q Consensus 634 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 713 (902)
...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+.....-+-..+...|
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vg----------- 237 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVG----------- 237 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh-----------
Confidence 666666666665543 4555556666666666666666655544444321 112222222333333333
Q ss_pred cCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHH
Q 048778 714 CHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVELCRAGRIVEAD 781 (902)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~ 781 (902)
+.+.++...++.++.+|..-.+|-.. +....+.++|.+++
T Consensus 238 ----------------------------d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 238 ----------------------------DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred ----------------------------hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66666666666666655554332211 11234456677777
Q ss_pred HHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 782 RIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 782 ~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+..++.++..+.-..+. ..+-.||...|++.+|++.-.+.++ +.|| ..++..-+.+|.-...+++|+.-|+.+
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777766432211111 3445566677777777777777766 3554 566666777777777777777777776
Q ss_pred HhCCC
Q 048778 857 FRYNG 861 (902)
Q Consensus 857 ~~~~~ 861 (902)
.+...
T Consensus 368 ~e~n~ 372 (504)
T KOG0624|consen 368 LELNE 372 (504)
T ss_pred HhcCc
Confidence 55543
No 96
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.04 E-value=4.7e-05 Score=83.92 Aligned_cols=149 Identities=12% Similarity=0.016 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
.+-+|+.+++..+...|.|...-..|+..|+-.|-+..|.++|+.+--+.+.-|.....+..-+...|++..+...++..
T Consensus 454 ~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 454 DLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHH
Confidence 66788888888888888888888888999988899999999998886655655554466777777888888888888776
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH---HHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 822 LESGFVPS-FESHCTVIQGLQSEGRNKQAKNLV---SDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 822 ~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.+. +..+ -++-..++.+| +.|.+.+-.++. +++...-..-...+-...++.+...++.++-...+..|.
T Consensus 534 lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 642 1111 12223333334 566665554443 332211111112222333444555666666555555443
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=6.7e-06 Score=79.96 Aligned_cols=204 Identities=8% Similarity=0.001 Sum_probs=94.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
...|+...|+.....+++- .+-|...|..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 3445566666666666553 12345555555666666666666665555554432 334445555555556666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCC
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDA 718 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 718 (902)
...++.++. .||....-.. | ..+.+..+.++.|.+. +. ...|..-+....+.-+.+.
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~~-ie--~~~~t~cle~ge~vlk~ep------------ 300 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQA-IE--EKHWTECLEAGEKVLKNEP------------ 300 (504)
T ss_pred HHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHHH-Hh--hhhHHHHHHHHHHHHhcCC------------
Confidence 666666553 3443322111 1 1222223333333321 11 1122221211111110000
Q ss_pred CCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 719 GSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
......-.....+-.++...+++-+|++.-.++++.+|.|..++..-+.+|.-..++++|+.-|+++.+
T Consensus 301 --~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 --EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred --cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 000000011111222233455666666666666666666666666666666666666666666666665
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=9.7e-08 Score=99.45 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=56.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
++..|...|++++|...|+.++...|.|...|+.|+..++...+.++|+..|.++++ ++|.-+- ..|+-+|...|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhh
Confidence 333333344666677777766666666666677776666666666677777766666 5565554 666666666666
Q ss_pred hHHHHHHHHHHH
Q 048778 811 YDDCLEFMNLIL 822 (902)
Q Consensus 811 ~~~A~~~~~~~~ 822 (902)
++||.+.|-.++
T Consensus 514 ykEA~~hlL~AL 525 (579)
T KOG1125|consen 514 YKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=2e-06 Score=92.62 Aligned_cols=259 Identities=12% Similarity=0.109 Sum_probs=127.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHAST 666 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 666 (902)
.+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+.. . ....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-W-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-c-CcCCCCcHHHHHHHHHHHHHc
Confidence 3455666666666666666542 333333332 112222 2333444444333 1 111222 33334455566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
|++++|...+++..+.. +.+...+..+...+...| ++++|
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g---------------------------------------~~~eA 167 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG---------------------------------------RFKEG 167 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC---------------------------------------CHHHH
Confidence 77777777777776631 223445555666666666 77777
Q ss_pred HHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----H-HHHHHHHccCChHHHHHH
Q 048778 747 FRLRDRIESCGGSTT----DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----T-SIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~-~l~~~~~~~g~~~~A~~~ 817 (902)
...+++.+...|.++ ..|..++..+...|++++|+.+++++......+.... . .+..-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 777777666553221 2345667777777777777777777654221111111 1 333334444433333322
Q ss_pred HHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---Cc---chhHHHHH--HHHhcCCcHhHH
Q 048778 818 MNLILES--GFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI---EE---KAAVLPYI--EFLLTGDELGKS 884 (902)
Q Consensus 818 ~~~~~~~--~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~---~~---~~~~~~l~--~~~~~~g~~~~a 884 (902)
+.+... ...|. .......+.++...|+.++|...++.+...... .. ..+...++ -.+...|++++|
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 248 -EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred -HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 111110 00011 122224556667777777777777776443221 00 01111122 234567777777
Q ss_pred HHHHHHHHhcC
Q 048778 885 IDLLNLIDQVH 895 (902)
Q Consensus 885 ~~~l~~~~~~~ 895 (902)
.+.+.+....+
T Consensus 327 ~~~L~~al~~a 337 (355)
T cd05804 327 LELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=8.9e-07 Score=84.16 Aligned_cols=315 Identities=12% Similarity=0.085 Sum_probs=166.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHH-HHHHH
Q 048778 200 YRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTT-LIHGL 278 (902)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~~~ 278 (902)
+.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|....++..|-..++.+... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 4455555555555666665555444432 224445555666666666666666666666542 344443322 23455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048778 279 CEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA--LCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDE 356 (902)
Q Consensus 279 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (902)
.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6677777777777666543 222222222222 234566666766666655322 33444444455567777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHH
Q 048778 357 ANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRT----YNELMEGLCRMNKSYKAVHLLK 432 (902)
Q Consensus 357 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~li~~~~~~g~~~~A~~~~~ 432 (902)
|.+-|+...+-|--.....||..+.. .+.|+++.|++...++.++|++-.... -...++.- ..|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHH
Confidence 77777777664333345556654443 356777777777777777765411100 00000000 00000 00000
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 433 RVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFG-LVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISP 511 (902)
Q Consensus 433 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 511 (902)
.. -+..+|.-...+.+.|+++.|.+.+-.|.-+. -..|++|...+.-. -..+++.+..+-+.-+....+ -
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-C
Confidence 00 01123333445567788888888777775332 23455655444221 123455566666666666543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 512 DEATITALADGHCKNGKTGEALMIFER 538 (902)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (902)
...|+..++-.||++.-++.|-.++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 566777777788888877777776654
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.7e-06 Score=80.04 Aligned_cols=322 Identities=12% Similarity=0.064 Sum_probs=178.6
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNV 378 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 378 (902)
+....--+++.+..+.+..++++|++++..-.++... +....+.|..+|....++..|-..++++... .|...-|..
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 3333344666777777788888888888777766422 6667777778888888888888888887764 344444432
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048778 379 -LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEG--LCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR 455 (902)
Q Consensus 379 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 455 (902)
-...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..++++.... .+..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence 235566778888888888877653 333322222222 23456677777777665422 233344444444567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHH
Q 048778 456 EGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEAT----ITALADGHCKNGKTGE 531 (902)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~ 531 (902)
.|+++.|.+-|+...+-+--.....|+..+.. .+.|+.+.|++...+++++|+...+.. .+-.++.- .+..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr----svgN 231 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR----SVGN 231 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh----cccc
Confidence 78888888877777665433344566655433 355777777777777777776422211 00000000 0000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048778 532 ALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF-GLVPSVVTYTILVDGLFRAGNIALAMSMIEVMK 610 (902)
Q Consensus 532 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (902)
-..+... .-...+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-++
T Consensus 232 t~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 0000000 00112333334455667777777777666421 122344443332211 12344555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 611 LAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 611 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
..+ +--..||..++-.||+..-++-|..++.+
T Consensus 304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 543 23345777777778887777777766654
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=2.6e-06 Score=91.83 Aligned_cols=269 Identities=12% Similarity=0.017 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
...|..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667777777777766666554321 12221 22223445677899999999999988763 444544442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 661 RAHAS----TGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 661 ~~~~~----~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
..+.. .|..+.+.+.+... .+..|+. .....+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G--------------------------------- 128 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG--------------------------------- 128 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC---------------------------------
Confidence 23333 34555555555441 1233433 34445555677777
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHhH---HHHHHHHHccCCh
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF-PAKAI---TSIIGCYCKERKY 811 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~---~~l~~~~~~~g~~ 811 (902)
++++|.+.+++.++..|.+...+..++..|...|++++|+..+++..+.... |+... ..++..+...|++
T Consensus 129 ------~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 129 ------QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred ------CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999874322 22212 4688899999999
Q ss_pred HHHHHHHHHHHHcCCCCC-H-HH--HHHHHHHHHhcCCHHHHHHH---HHHHHhC-CCCCcchhHHHHHHHHhcCCcHhH
Q 048778 812 DDCLEFMNLILESGFVPS-F-ES--HCTVIQGLQSEGRNKQAKNL---VSDLFRY-NGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~-~-~~--~~~l~~~l~~~g~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
++|..+++++......+. . .. ...+...+...|..+.+... ....... +.........+...++...|+.++
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 999999999864322112 1 11 11334445556644333333 1211111 111112223356677888999999
Q ss_pred HHHHHHHHHhc
Q 048778 884 SIDLLNLIDQV 894 (902)
Q Consensus 884 a~~~l~~~~~~ 894 (902)
|...++.+...
T Consensus 283 a~~~L~~l~~~ 293 (355)
T cd05804 283 LDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=2e-07 Score=93.54 Aligned_cols=168 Identities=13% Similarity=0.020 Sum_probs=131.8
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-H
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-T 799 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~ 799 (902)
..+.+...+..+...|++++|...++++++..|.++ .++..++..|...|++++|+..++++++..+..... . .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666667777799999999999999887765 577899999999999999999999999854322222 2 5
Q ss_pred HHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 048778 800 SIIGCYCKE--------RKYDDCLEFMNLILESGFVPSF-ESH-----------------CTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 800 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~l~~~g~~~~A~~~~ 853 (902)
.++.++... |++++|.+.++++.+. .|+. ..+ ..++..+.+.|++++|+..+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 667777665 7899999999999875 4542 111 24567788999999999999
Q ss_pred HHHHhCCC-CC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 854 SDLFRYNG-IE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 854 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+++++... .| ....+..++.++.+.|++++|.+.++.+..+.
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99976643 23 24578889999999999999999999987764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=2.5e-05 Score=95.79 Aligned_cols=336 Identities=14% Similarity=0.070 Sum_probs=186.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC--hhhHHHHHHHHH
Q 048778 488 LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDL------KT--PHVLNSFLDVLC 559 (902)
Q Consensus 488 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~li~~~~ 559 (902)
+...|+++.+...+..+.......++.........+...|+.+++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345555555555544311100111222233344445667777777777665432100 11 111122234455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHh
Q 048778 560 KENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLAG--C-PPN--VHTYTVIINGLCQ 630 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~ 630 (902)
..|++++|...+++....-...+ ....+.+...+...|++++|...+++..... . .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67888888888877665211111 1234555566677888888888887776421 0 111 2344555667778
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMFD----LGVS--P-NHITYSILVRAHASTGRLDHAFKIVSFMVANG--CQLN--SNVYSALLAGLV 699 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~----~g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~--~~~~~~l~~~~~ 699 (902)
.|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888888777653 2211 1 12334455666777788888888888776421 1121 122222333444
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHH-----HHHHHHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFY-----NFLVVELC 772 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-----~~l~~~~~ 772 (902)
..| +.++|.+.++++.... ......+ ...+..+.
T Consensus 624 ~~G---------------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 624 ARG---------------------------------------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HcC---------------------------------------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 444 8888888887775542 1111111 11223445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHh---H-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhc
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKA---I-TSIIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSE 843 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~---~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~ 843 (902)
..|+.+.|...+............. . ..++.++...|++++|..+++++... |..++ ..++..++.++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 5788888888876654321111111 1 45666788888888888888887642 22222 25566777888888
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 048778 844 GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~ 862 (902)
|+.++|...+.++++....
T Consensus 745 G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHhCc
Confidence 8888888888888766543
No 105
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=4.2e-06 Score=86.05 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=49.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 048778 558 LCKENKLKEEYAMFGKILKFGLVP-SVVTYTILVDGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRF- 634 (902)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 634 (902)
+...+..++|+.+..++++. .| +..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33344444555555444442 12 2223333333333333 3444444444444432 22333344333333333331
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 635 -KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 635 -~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+++..+++++++.. +-|..+|+....++.+.|+++++++.++++++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444332 23344444444444444444444444444444
No 106
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=4.9e-06 Score=85.55 Aligned_cols=220 Identities=9% Similarity=0.032 Sum_probs=128.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG-RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
.++.++|+.+..++++.. +-+...|+....++...| ++++++.+++++++. -+.+..+|+.....+.+.+.
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~------ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGP------ 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCc------
Confidence 456667777777777643 233445555555555666 467777777777763 12344455544444444440
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
...+++..+++++++.+|.|..+|...+.++...|++++|++.++++++
T Consensus 122 -------------------------------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 122 -------------------------------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred -------------------------------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0135667777777777777777777777777777777777777777777
Q ss_pred cCCCchHhHHHHHHHHHcc---CC----hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 048778 790 SGVFPAKAITSIIGCYCKE---RK----YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSE----GRNKQAKNLVSDLF 857 (902)
Q Consensus 790 ~~~~p~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~----g~~~~A~~~~~~~~ 857 (902)
.++....+.+....++.+. |. .++++.+..++++. .|+ ...|+.+..++... ++..+|.+++.+..
T Consensus 171 ~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 171 EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5443333334444444433 22 24566777666653 453 36666666666552 34566777777765
Q ss_pred hCCCCCcchhHHHHHHHHhcCC------------------cHhHHHHHHHHHH
Q 048778 858 RYNGIEEKAAVLPYIEFLLTGD------------------ELGKSIDLLNLID 892 (902)
Q Consensus 858 ~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~l~~~~ 892 (902)
+..+ .+......|++.+.... ..++|.++++.+.
T Consensus 249 ~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 4332 22334444555554421 2366888888774
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=3.3e-07 Score=97.99 Aligned_cols=219 Identities=14% Similarity=0.143 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
|--..-..+...+...|-...|..+|++.. .|..+|.+|+..|+..+|..+..+-.+. +||...|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334445555556666666666665542 3445556666666666666666555552 46666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+......-+++|.++.+..... .-..+.......+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~-------------------------------------- 499 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK-------------------------------------- 499 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch--------------------------------------
Confidence 6555555555555555543221 0000000011111
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
+++++.+.++...+.+|-...+|..++.+..+.++++.|.+.|..... ..|++.. +++..+|.+.|+..+|...+
T Consensus 500 -~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 500 -DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 555555555555555555555555555555555555555555555554 4455544 55555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+++.+.+..+ ...|........+-|.+++|++.+.+++..
T Consensus 577 ~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 577 KEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5555443222 112222222244555555555555555433
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=1.2e-06 Score=82.78 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=124.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..+-..+...|+-+....+....... .+.|......++......|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g---------------------------------- 114 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNG---------------------------------- 114 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhc----------------------------------
Confidence 55666777777777777777665431 3335555555666666666
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++.+|...++++....|+|...|+.++.+|.+.|+.++|..-|.++++ +.|++.. ++++..|.-.|+++.|
T Consensus 115 -----~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 115 -----NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred -----chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999998 6666555 8899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++......+ .-|+..-..++.+....|++++|..+..+-
T Consensus 188 ~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 188 ETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999988653 335666677888888999999999888763
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.6e-07 Score=95.32 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=198.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 591 DGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
.-+.+.|++.+|.-.|+..+..+ +-+...|-.|.......++-..|+..+++..+.. +-|......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678999999999999999885 6677899999999999999999999999999875 567888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLR 750 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 750 (902)
+|++.++..+.. .|.... ....+..+..-.. +.+.....+....++|
T Consensus 371 ~Al~~L~~Wi~~--~p~y~~-------l~~a~~~~~~~~~------------------------~s~~~~~~l~~i~~~f 417 (579)
T KOG1125|consen 371 QALKMLDKWIRN--KPKYVH-------LVSAGENEDFENT------------------------KSFLDSSHLAHIQELF 417 (579)
T ss_pred HHHHHHHHHHHh--Cccchh-------ccccCccccccCC------------------------cCCCCHHHHHHHHHHH
Confidence 999999999864 222111 0111100000000 0011111455666777
Q ss_pred HHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048778 751 DRIESCGG--STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGF 826 (902)
Q Consensus 751 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (902)
-++....| .|+.+...|+-.|.-.|.+++|+..|+.++. ++|++.. +.|+..+....+.++|+..|.++++ +
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--L 493 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--L 493 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--c
Confidence 77766665 8999999999999999999999999999998 7898877 9999999999999999999999998 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------CcchhHHHHHHHHhcCCcHhHHHH
Q 048778 827 VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI---------EEKAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 827 ~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
.|.. .+...++-.|...|.++||.+.|=.++.+... ++..+|..|-.++...++.|...+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 7874 66677888888999999999999988755322 223578888777777777764443
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.4e-07 Score=92.84 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcC
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR----AHASTG 667 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~----~~~~~g 667 (902)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...+.. .+...+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344556666666655431 244455555666666666666666666666532 3322 222222 222223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 668 RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 668 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
++.+|..+|+++.+. ..++..+.+.+..+....| ++++|.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~---------------------------------------~~~eAe 221 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG---------------------------------------HYEEAE 221 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT----------------------------------------HHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC---------------------------------------CHHHHH
Confidence 566666666665543 4455556666665666665 666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRI-VEADRIMKDIMK 789 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 789 (902)
++++++++.+|.++.++..++.+....|+. +.+.+.+.++..
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666666666666666655 445555555554
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=0.00086 Score=74.42 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=119.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHH
Q 048778 172 LAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEA 251 (902)
Q Consensus 172 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 251 (902)
+.|.|+.++|..+++.....+.. |..|...+-..|...+..++|..+|++.... .|+......+..+|.|.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999888887776644 8889999999999999999999999998866 57777778888888998888765
Q ss_pred HHHHHHhhhcCCCCCCHhhHHHHHHHHHhcC-Ch---------hHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCChH
Q 048778 252 FKVFDVMSKEASYRPNSVTFTTLIHGLCEVG-RL---------DEAFSLKDEMCEKG-WQPSTRTYTVLIKALCDISLTD 320 (902)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~ 320 (902)
.+.--++-+ .++.+...+=++++.+.+.- .. .-|.++++.+.+.+ -.-+..-...-...+-..|+++
T Consensus 130 Qkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 130 QKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 544444444 33345555445555554432 11 22444444444443 1111111112223334556677
Q ss_pred HHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 321 KALSLF-DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 321 ~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
+|+.++ ....+.-...+...-+.-++.+...+++.+..++-.++...|.
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 777766 3333333333444555556666666777777776666666543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=3.8e-05 Score=94.11 Aligned_cols=333 Identities=13% Similarity=0.054 Sum_probs=196.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHH
Q 048778 453 FCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI------SPDE--ATITALADGHC 524 (902)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~li~~~~ 524 (902)
....|+++.+...++.+.......+..........+...|++++|...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334566666666655542211111122223334445567788888777776644210 0111 11122234456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTP----HVLNSFLDVLCKENKLKEEYAMFGKILKF----GLV-PSVVTYTILVDGLFR 595 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~ 595 (902)
..|++++|...+++........+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887663111121 23455666677889999999988887642 111 112345556677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 048778 596 AGNIALAMSMIEVMKL----AGCP--P-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVSP--NHITYSILVRAHA 664 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~l~~~~~ 664 (902)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887765 2211 1 2234455666777889999999998887642 1112 2344555677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHH-----HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhh
Q 048778 665 STGRLDHAFKIVSFMVANGCQ-LNSNVYS-----ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFL 738 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~-~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
..|++++|...+..+....-. .....+. ..+..+...|
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------------------ 667 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG------------------------------------ 667 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC------------------------------------
Confidence 899999999998888642111 1111110 0112223344
Q ss_pred hhccHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHcc
Q 048778 739 REMDVEHAFRLRDRIESCGGSTT----DFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~ 808 (902)
+.+.|.+.+.......+... ..+..++.++...|++++|...++++... |...+... ..++.++...
T Consensus 668 ---~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 668 ---DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred ---CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 77777777766554322221 12456777888888888888888887653 22222222 5667778888
Q ss_pred CChHHHHHHHHHHHHc
Q 048778 809 RKYDDCLEFMNLILES 824 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~ 824 (902)
|+.++|...+.++.+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888888754
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1.4e-06 Score=83.45 Aligned_cols=119 Identities=9% Similarity=0.031 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH-HHccCC--hHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC-YCKERK--YDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~-~~~~g~--~~~A~~ 816 (902)
+.+++...+++.++.+|.|...|..|+..|...|++++|+..|+++.+ +.|++.. ..++.+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 788999999999999999999999999999999999999999999998 5566555 777776 467777 599999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
+++++++. .| +..++..++..+.+.|++++|+..++++++.....+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999986 45 568889999999999999999999999987765433
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=4.8e-07 Score=91.77 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG--RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
+.+.|.+.++.|.+.++++..+-...++.....| ++.+|.-+|+++.+. ..++... +.++.++...|++++|.+++
T Consensus 146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666666666666554444433333333333333 466666666665543 2233333 56666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRN-KQAKNLVSDL 856 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~-~~A~~~~~~~ 856 (902)
+++.+.. .-++.+...++-+....|+. +.+.+++.++
T Consensus 225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6655432 12344555555555555555 4455555554
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=1.5e-06 Score=87.24 Aligned_cols=194 Identities=11% Similarity=-0.022 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-N- 689 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~- 689 (902)
......+..+...+...|++++|...++++.... +.+ ...+..+..++.+.|++++|...++++++. .|+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch
Confidence 3455677778888888899999999888887653 222 246677888888889999999999888864 3432 2
Q ss_pred --HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048778 690 --VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL 767 (902)
Q Consensus 690 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 767 (902)
.+..+...+.... .......|+.++|.+.+++++...|.+...+..+
T Consensus 107 ~~a~~~~g~~~~~~~-------------------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 107 DYAYYLRGLSNYNQI-------------------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHHHHHHhc-------------------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 2222332232211 1234445778888888888888887776655444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCC
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGF-VP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~l~~~g~ 845 (902)
...... ... . ......++..|...|++.+|+..++++.+... .| ....+..++.++.+.|+
T Consensus 156 ~~~~~~----~~~------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 156 KRMDYL----RNR------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHH----HHH------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 322110 000 0 00013567788999999999999999986421 23 24788899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 048778 846 NKQAKNLVSDLFRY 859 (902)
Q Consensus 846 ~~~A~~~~~~~~~~ 859 (902)
+++|..+++.+...
T Consensus 219 ~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 219 KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998886543
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1e-05 Score=92.78 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=181.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 606 IEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-----HITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 606 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
|++..... +.....|...|.-....++.++|.++.++++.. +.+. ...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444431 444567888888888888889999888888753 3222 3467777777777788888889999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 681 ANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 681 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+ +.....+|..|...|.+.+ ++++|.++++.|.+.....
T Consensus 1525 q--ycd~~~V~~~L~~iy~k~e---------------------------------------k~~~A~ell~~m~KKF~q~ 1563 (1710)
T KOG1070|consen 1525 Q--YCDAYTVHLKLLGIYEKSE---------------------------------------KNDEADELLRLMLKKFGQT 1563 (1710)
T ss_pred H--hcchHHHHHHHHHHHHHhh---------------------------------------cchhHHHHHHHHHHHhcch
Confidence 6 3444567788888888888 8999999999999988878
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQ 838 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (902)
...|..++..+.++.+-++|.++++++++.-++...+- ...+..-.+.|+.+.+..+|+..+.. +..-.+.|+.+++
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYID 1642 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHH
Confidence 88999999999999999999999999988544433443 66677778899999999999998864 2335678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcch--hHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 839 GLQSEGRNKQAKNLVSDLFRYNGIEEKA--AVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 839 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
.=.+.|..+.+..+|++++...+.+..+ .|..++.-=...|+-+.+..+-.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 8889999999999999999888887754 3333443334456655555444433
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.1e-06 Score=92.10 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=143.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 546 KTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
|-...-..+...+.+.|-..+|..+|++.. .|.-.+.+|+..|+..+|..+..+-.++ +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334455666677777777777776653 3555667777777777777777766663 67777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCc
Q 048778 626 NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~ 704 (902)
+......-++.|.++.+..... .-..+.....+.++++++.+.++...+ +.| -..+|-.+..+..+.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle-- 533 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE-- 533 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh--
Confidence 6666666667777666554321 112233333446777888777777665 233 3455555554444444
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++.|.+.|.......|.+..+|+++..+|.+.|+-.+|...+
T Consensus 534 -------------------------------------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 534 -------------------------------------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -------------------------------------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 8888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 785 ~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+++.+.+..+-.+..+..-.-.+.|.+++|++.+.++.+
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 888876644433334444456677888888888887763
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.8e-06 Score=78.26 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
|... ..+-..+...|+-+....+..+..... +.|.......+....+.|++.+|...+.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3334 566677888888888888877765432 456666677899999999999999999999873 4668899999999
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
+|.+.| ++++|...|.++++..|.++...+.|+..|.-.|+
T Consensus 143 aldq~G---------------------------------------r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 143 ALDQLG---------------------------------------RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHcc---------------------------------------ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
.+.|..++......+.....+...+..+....|++++|.++...-.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999987543333333889999999999999999877654
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3.5e-08 Score=62.81 Aligned_cols=32 Identities=56% Similarity=0.991 Sum_probs=19.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 263 SYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 263 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 294 (902)
|+.||+.|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666665555
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=3.6e-06 Score=95.44 Aligned_cols=115 Identities=8% Similarity=0.007 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
..++|..+++.+.+..|.+..+...++..+.+.+++++|+..+++.+. ..|+... ..++.++.+.|++++|..+|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 5577776 888999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 820 LILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 820 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
++... .|+ ...+..++.++...|+.++|...|+++++.-
T Consensus 179 ~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 179 RLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99974 454 5888899999999999999999999987664
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.0012 Score=68.94 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 599 IALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG---RFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.+++.++++...+.-..-+..+|..+..---..- ..+.....++++... .+.| ..+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 4556666666655322334445544443221111 255556666666643 2233 3467788888889999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 675 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
+|.++.+.+..+ +..++.+++..+|.. +.+-|.++|+--
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~csk----------------------------------------D~~~AfrIFeLG 427 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSK----------------------------------------DKETAFRIFELG 427 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcC----------------------------------------ChhHHHHHHHHH
Confidence 999999987777 778888888877654 788999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
++..++++..-...+..+...++-+.|..+|++++..++.|+... ..++.-=..-|+.+.+.++-+++..
T Consensus 428 Lkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 428 LKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998899998888889999999999999999999998866666654 7777777888999999998888764
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.7e-08 Score=61.51 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 048778 227 GFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (902)
|+.||+.+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=9.3e-06 Score=77.74 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=108.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
+-.|...|+++.+..-.+.+.. |. ..+...++.++++..++...... +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777877776444332221 11 01223566778888888877765 67788888888889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc--HHH
Q 048778 670 DHAFKIVSFMVANGCQL-NSNVYSALLAGL-VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD--VEH 745 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 745 (902)
++|...+++..+. .| +...+..+..++ ...| + .++
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g---------------------------------------~~~~~~ 128 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAG---------------------------------------QHMTPQ 128 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC---------------------------------------CCCcHH
Confidence 9999999988874 44 566777777654 4555 4 588
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
|.++++++++.+|.+..++..++..+.+.|++++|+..|+++++.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999998999999999999999999999999999998874
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=1.4e-05 Score=90.78 Aligned_cols=211 Identities=10% Similarity=0.040 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALA-MSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF--DLGVSPNHITYSIL 659 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~l 659 (902)
......+-.+...-|..++| .+++.++.+ + ...++.+..+...+-+++ -...+.+...+..|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 33344444455566666665 334444321 2 233444444444333333 12356679999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFL 738 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
..+..+.|.+++|..+++...+ +.|+. .....+...+.+.+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~------------------------------------ 134 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQ------------------------------------ 134 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhc------------------------------------
Confidence 9999999999999999999997 57754 55667777888888
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++|...+++++..+|.+...+..++.++.+.|++++|.++|+++...+..+......++.++...|+.++|...|
T Consensus 135 ---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 135 ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred ---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999844322233388999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+++.+.. .|....|+.+ .++...-..++++.
T Consensus 212 ~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 212 QAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 9999752 4555554433 24556666677774
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=3.5e-05 Score=79.53 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=87.3
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~ 817 (902)
.|+.++|+..++.+++..|.|+..+...+..+.+.++.++|.+.+++++. ..|+... .+++.+|.+.|+..+|+.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 34888888888888887788888888888888888888888888888887 5566444 7888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
++...... ..|+..|..|+.+|...|+..+|.....+
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 88877542 34567888888888888887777655544
No 126
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.53 E-value=0.0018 Score=66.34 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred hhhhhhhhhcc-HHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHcCCCchHhH-----
Q 048778 732 RSSKNFLREMD-VEHAFRLRDRIESCGGSTTDFYNFLVV----ELCRA---GRIVEADRIMKDIMKSGVFPAKAI----- 798 (902)
Q Consensus 732 ~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~----- 798 (902)
..++.+|+.|. -+.|.++++.+++-.+.|..+-+..-. .|.+. ..+.+-+.+-+-+.+.|+.|-.+.
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 45678999888 788899999998877888766554432 22221 233444444445556677665544
Q ss_pred HHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhH
Q 048778 799 TSIIGC--YCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAV 868 (902)
Q Consensus 799 ~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 868 (902)
+-|.++ +...|++.++.-+-.-+.+ +.|++.+|..++-++....+++||.+++.. .+|+..++
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 444443 4578999999888777766 689999999999999999999999999988 35565555
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=8.3e-05 Score=69.83 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
|..++-+....|+.+.|...++.+... ++.+...-..-..-+-..|++++|+++++.+++.+ +.|..++-.-+-..-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344444455556666666666666554 22222222222222344566666666666666554 4455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
.|+.-+|++-+....+. +..|...|.-+...|...| +++.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~---------------------------------------~f~k 172 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG---------------------------------------DFEK 172 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh---------------------------------------HHHH
Confidence 56666666666555553 4556666666666666666 6666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMK 789 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 789 (902)
|.-.+++++-..|-++..+..++..+.-.| +..-|.+.|.+.++
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666544443 45556666666665
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=7.9e-05 Score=85.79 Aligned_cols=204 Identities=9% Similarity=0.029 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 549 HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVP-----SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTV 623 (902)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 623 (902)
..|-..+......++.++|+++.++++.. +.+ -...|.++++.-...|.-+...++|+++.+. .--...|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 33444444455555555555555555431 111 1233444444444444445555555555442 111234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|..++.++++. -|...
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e-------------- 1598 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE-------------- 1598 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh--------------
Confidence 555555555555555555555432 1234444555555555555555555555555442 22110
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRI 783 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 783 (902)
..+.....+...++.|+.++++.+|+..+...|.-...|+.+++.-.++|+.+.+..+
T Consensus 1599 ----------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1599 ----------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred ----------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 0011111112222333555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCc
Q 048778 784 MKDIMKSGVFP 794 (902)
Q Consensus 784 ~~~~~~~~~~p 794 (902)
|+++...++.|
T Consensus 1657 feRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1657 FERVIELKLSI 1667 (1710)
T ss_pred HHHHHhcCCCh
Confidence 55555544444
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=4.2e-06 Score=75.66 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
.++++.++.+|.+ +..++..+...|++++|...|+.++. ..|+... ..++.++...|++++|...++++.+.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3444555443332 33455555555555555555555555 3333333 55555555555566666655555543
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.| +...+..++.++...|++++|+..++++++.
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 3355555555555556666666666655444
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=8e-05 Score=69.93 Aligned_cols=186 Identities=10% Similarity=0.080 Sum_probs=144.9
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 596 AGNIALAMSMIEVMKL---AG-CPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~---~~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
..+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567788888877765 33 455654 4566777788899999999999999865 2333333223333455679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLR 750 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 750 (902)
+|+++++..++.. +.|..++.--+......| +.-+|++.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G---------------------------------------K~l~aIk~l 143 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQG---------------------------------------KNLEAIKEL 143 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcC---------------------------------------CcHHHHHHH
Confidence 9999999999863 446777776666777777 777999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC---ChHHHHHHHHHHHHc
Q 048778 751 DRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER---KYDDCLEFMNLILES 824 (902)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g---~~~~A~~~~~~~~~~ 824 (902)
.+.++..+.|..+|.-|+..|...|++++|.-.+++++- +.|-... ..+++.+...| +++-|.+++.+.++.
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 6676555 88888877665 677889999999884
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=2.4e-05 Score=89.45 Aligned_cols=219 Identities=10% Similarity=0.054 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4566777888887888888888888866664 44443 333333345555554444433 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+......++.-...+...|.+ +.-+...+..+..+|.+.|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g-------------------------------------- 130 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLN-------------------------------------- 130 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcC--------------------------------------
Confidence 333334444333333344443 2334446667777777777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+.++|...++++++.+|.|+.+.+.++..|... ++++|++++.+++.. |...+++.++.++|++
T Consensus 131 -~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 131 -ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSK 194 (906)
T ss_pred -ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999763 3444455555555555
Q ss_pred HHHc-------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 821 ILES-------------------GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 821 ~~~~-------------------~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
+... |..--...+.-+-..|-+.+++++++.+++.+++.... +......+...|.
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 5543 11112233334445666777899999999999888765 3334455666554
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=3.7e-06 Score=75.85 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+.++++++.+|.+......++..+...|++++|.+.++++...+ |+... ..++.+|...|++++|..++++..+.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888889999999999999999999999998844 54433 889999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 826 FVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 826 ~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
..+...+..++.++...|++++|...++++++...
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33568888899999999999999999999887764
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.0038 Score=65.40 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 372 GVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVD 451 (902)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 451 (902)
|+.+|+.||+-+..+ .++++.+.++++... .+-....|..-|..-....+++....+|.+.+..- -+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 666677766655444 666666666666543 22234455666666666666666666666655432 23444444443
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=6.9e-06 Score=74.24 Aligned_cols=91 Identities=16% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
.+...+...|++++|...++..+.. .| +...|..+...+...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g---------------------------------- 72 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLK---------------------------------- 72 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHh----------------------------------
Confidence 3445555555555555555555542 23 4445555555555555
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...|+++++.+|.++..+..++.++...|++++|+..|+++++
T Consensus 73 -----~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 73 -----EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred -----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666555555555555555555555555666666666555555
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=1.7e-05 Score=72.18 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~~l~~~~~~~g~~~~A~ 815 (902)
+...+...++.+.+.+|.+ ..+...++..+...|++++|...|+.+.+....|... . ..++.++...|++++|+
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666655555 3344445566666666666666666666644222211 1 45566666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 816 EFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 816 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++..... ......+...+++|.+.|++++|+..|+++
T Consensus 106 ~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 106 ATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666553222 122344555666666666666666666654
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0002 Score=67.86 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
.+.+|.-+|+++.++.+|++.+.+..+.+....|++++|..+++.++.+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 45555555555555555555555555555555566666666665555543
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00015 Score=74.98 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKAS 705 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~ 705 (902)
.+...|.+++|+..++.++.. .+.|...+....+.+.+.++.++|.+.++++.. ..|+ ...+-.+..+|.+.|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g--- 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG--- 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC---
Confidence 344556666666666666554 244455555556666666666666666666665 3444 344445555666666
Q ss_pred CccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 706 GVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
+..+|+..++.....+|.|+..|..|+.+|...|+..+|.....
T Consensus 389 ------------------------------------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 389 ------------------------------------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred ------------------------------------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 66666666666666666666666666666666666655554433
Q ss_pred HHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 786 DIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 786 ~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+ .|.-.|++++|+..+..+.+.
T Consensus 433 E-----------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 E-----------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred H-----------------HHHhCCCHHHHHHHHHHHHHh
Confidence 2 344456666666666666543
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=0.00021 Score=82.06 Aligned_cols=150 Identities=9% Similarity=-0.015 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 585 TYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.+..+..+|-+.|+.++|..+|+++++.. +-|....|.+...|... +.++|..++.+.... |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44455555555555555555555555544 44455555555555555 555555555554432 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 665 STGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
..+++.++.+++.++... .|+ ...+--+.......- .+....+++..+-+.+-...++
T Consensus 181 ~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~-------------------~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR-------------------EFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred hhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh-------------------ccchhHHHHHHHHHHHhhhhhh
Confidence 334455555555555442 221 111111111111110 0111222333333333444499
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
+++..+++.+++.+|.|..+..-++.+|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999999999999998886
No 139
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.00044 Score=69.74 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=134.6
Q ss_pred CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 616 PNVHTYTVII-NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 616 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
|...+|..+- .++.-.|++++|...--..++.. ..+......-..++.-.++.+.|...+++.++ ..|+.......
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhH
Confidence 4445555543 45566788888888877776654 33444444444455667888999999998886 56766554444
Q ss_pred HHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 048778 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST----TDFYNFLVVE 770 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 770 (902)
-..+.+.. .+...+...++.|++..|.+.|.+.+..+|.+ ...|...+..
T Consensus 243 ~~~~k~le--------------------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 243 SMMPKKLE--------------------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hhhHHHHH--------------------------HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 33332222 23345567788899999999999999998665 4456777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 048778 771 LCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQ 841 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~ 841 (902)
..+.|+..+|+.-.+.+++ +.|.-+- ..-+.++...++|++|.+.+++..+..-.+.. .++.....++-
T Consensus 297 ~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 8899999999999999987 5565554 56677888999999999999999865333332 44444434443
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0012 Score=62.80 Aligned_cols=249 Identities=13% Similarity=0.092 Sum_probs=146.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 048778 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK 565 (902)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (902)
+-+.-.|++..++..-...... +-+...-.-+..+|...|...... .++... -.+.......+...+...++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 3445567777766655544433 134444445556666666654332 222222 2344444444444444444444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 566 EEY-AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644 (902)
Q Consensus 566 ~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 644 (902)
+-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 333444443333333333333455778888888888776521 2333333344566777788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCC
Q 048778 645 FDLGVSPNHITYSILVRAHA----STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGS 720 (902)
Q Consensus 645 ~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (902)
.+. .+..|.+-|..++. ..+++.+|.-+|++|.++ ..|+..+.+....++...+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~------------------ 221 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG------------------ 221 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc------------------
Confidence 763 24555555555543 345678888888888764 6777778777777777777
Q ss_pred CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048778 721 SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEAD-RIMKDIMK 789 (902)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 789 (902)
++++|..++++++..++.++.++..++-.-...|...++. +...+...
T Consensus 222 ---------------------~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 ---------------------RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred ---------------------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888888877777766666554443 34444444
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.6e-05 Score=76.94 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=87.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.+++++|+..|.+++++.|.|++.|..-+.+|.+.|.++.|++-.+.++. +.|...- ..|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 35566777999999999999999999999999999999999999999999999998 5565544 8999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH
Q 048778 812 DDCLEFMNLILESGFVPSFESHC 834 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~ 834 (902)
++|++.|++.++ ++|+.++|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 999999999988 589887764
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=7.9e-05 Score=67.74 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~ 818 (902)
+.++|...|..+.. .+ ..++...+.+.++.+.+......... ..++..+...|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~--------------~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQ--------------AL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHH--------------HH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666553 23 58889999999999988653332222 66788899999999999999
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 819 NLILESGFVPSF--ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 819 ~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+.+.+....|.. .....++.++...|++++|+..++.....+ .....+...++.+.+.|++++|+..|+..
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999986533332 455668899999999999999998743222 34456778899999999999999999864
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=7.4e-05 Score=67.25 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|.+.++.+.+.+|.++..|..++..+...|++++|...++++.+. .|+... ..++.+|...|++++|...++
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444444444444555554445555555554444442 222222 444444444555555555554
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
..++
T Consensus 110 ~al~ 113 (135)
T TIGR02552 110 LAIE 113 (135)
T ss_pred HHHH
Confidence 4444
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=0.00012 Score=64.74 Aligned_cols=99 Identities=6% Similarity=0.001 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCT 835 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 835 (902)
+.+......++..+...|++++|..+|+.+.. +.|.... ..|+-++-..|++++|+..+..+.... ..++..+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 44556677777788888888888888888877 5566555 778888888888888888888887643 235677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.++...|+.+.|.+-|+.++..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888877544
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.07 E-value=6.2e-05 Score=66.59 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=79.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
.+..+...|++++|.++|+-+...+|.+...|..|+.++-..|++++|+..|..+.. +.|++.. ..++.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCC
Confidence 333444455999999999999999999999999999999999999999999999998 5566665 999999999999
Q ss_pred hHHHHHHHHHHHH
Q 048778 811 YDDCLEFMNLILE 823 (902)
Q Consensus 811 ~~~A~~~~~~~~~ 823 (902)
.+.|.+.|+.++.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 146
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=0.0001 Score=73.74 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=94.8
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHh-H
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESC----G--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKA-I 798 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~ 798 (902)
|..++.+++..|+++.|+...+.-+.. + .....++..|++++.-.|+++.|.+.|+..+.. |-+.-+. .
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 445567777888999998776554333 2 223457889999999999999999999887532 2222222 2
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 799 -TSIIGCYCKERKYDDCLEFMNLILES--GF---VPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.+|++.|.-...+++|+.++.+-+.. .+ .-...++..++.++-..|..++|+.+.+..++.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88999999999999999999875531 11 123467778899999999999999999887644
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00025 Score=71.35 Aligned_cols=261 Identities=12% Similarity=0.003 Sum_probs=151.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDH 671 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 671 (902)
.+.+..++..|+..+...++.. +-+..-|..-...+..-|++++|..-.+.-.+.. +-....+.....++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 3555666666666666666652 3344445555555556666666665554444321 1112233444444555555555
Q ss_pred HHHHHHH---------------HHHCCC-CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 672 AFKIVSF---------------MVANGC-QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 672 A~~~~~~---------------m~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
|.+.++. ...... +|.-..|..+- .+
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lk--------------------------------------a~ 177 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLK--------------------------------------AE 177 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhh--------------------------------------hh
Confidence 5544441 111100 11112222221 12
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHH----------
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSI---------- 801 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l---------- 801 (902)
.+...|+.++|...--..+++++.+......-+.++.-.++.+.|+..|++.+. +.|+... ...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 233445888888888888888877777777777777777888888888888887 4465543 111
Q ss_pred HHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcC
Q 048778 802 IGCYCKERKYDDCLEFMNLILES---GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTG 878 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 878 (902)
++-..+.|++.+|.+.+...+.. +..|+...|...+.+..+.|+.++|+.--+++++.+.+- ...+.....++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHHHH
Confidence 22356778888888888888752 122234556666667778888888888888775554221 22333444556677
Q ss_pred CcHhHHHHHHHHHHhcC
Q 048778 879 DELGKSIDLLNLIDQVH 895 (902)
Q Consensus 879 g~~~~a~~~l~~~~~~~ 895 (902)
++|++|.+-++...+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888887776653
No 148
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.00062 Score=60.73 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESH 833 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 833 (902)
.|.......|+.++.+.|++.||...|++....-...|... ..++++....++...|...++++-+.+ | +++..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34566677899999999999999999999986333344455 888999999999999999999998753 4 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
..+++.|...|++.+|...++.+++.-+.|....+ +...+.++|+.+++..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHHH
Confidence 77889999999999999999999877666655544 678899999988887666665544
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1e-05 Score=52.62 Aligned_cols=33 Identities=52% Similarity=0.958 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPS 302 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 302 (902)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=9.1e-05 Score=71.80 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
+-+.+.+++.+|+..|.++++ +.| |.+.|..-..+|.+.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg------------------------------------- 129 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLG------------------------------------- 129 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhc-------------------------------------
Confidence 345677899999999999987 565 5666666777788877
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH---HH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD---DC 814 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~---~A 814 (902)
.++.|++-.+.++..+|....+|..|+.+|...|++++|++.|+++++ +.|+..+ ..|-.+=-+.+... .+
T Consensus 130 --~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~ 205 (304)
T KOG0553|consen 130 --EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQA 205 (304)
T ss_pred --chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCccccc
Confidence 889999999999999888899999999999999999999999999988 7787765 55544443333333 33
Q ss_pred HHHHHHHHHcCCCCCH
Q 048778 815 LEFMNLILESGFVPSF 830 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~ 830 (902)
..-++-....|.-|+.
T Consensus 206 ~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 206 SGSFDMAGLIGAFPDS 221 (304)
T ss_pred ccchhhhhhccCCccc
Confidence 3333333344433554
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00018 Score=75.58 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 623 VIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
.|+..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|++++++.++. .+.+...+......|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444445556666666666666542 332 233555555555556666666665542 2224444444444444444
Q ss_pred CcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 703 KASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
+.+.|.++.+++.+..|.+..+|..|+.+|.+.|+++.|+.
T Consensus 249 ---------------------------------------~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 249 ---------------------------------------KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 55666666666666666666666666666666666666665
Q ss_pred HHHHH
Q 048778 783 IMKDI 787 (902)
Q Consensus 783 ~~~~~ 787 (902)
.+..+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 55544
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.0006 Score=71.72 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
...|+..+...+++++|+.+++++.+. .|+. ...++..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~--------------------------------- 214 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMN--------------------------------- 214 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcC---------------------------------
Confidence 344556666678888888888888764 3543 334566666666
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
+-.+|.+++++.++..|.+...+...+..+...++++.|+.+.+++.+ ..|+... ..|+.+|.+.|++++
T Consensus 215 ------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ 286 (395)
T PF09295_consen 215 ------EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFEN 286 (395)
T ss_pred ------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHH
Confidence 677888888888877788888888888888888888888888888887 6677765 788888888888888
Q ss_pred HHHHHHHHH
Q 048778 814 CLEFMNLIL 822 (902)
Q Consensus 814 A~~~~~~~~ 822 (902)
|+..++.+.
T Consensus 287 ALlaLNs~P 295 (395)
T PF09295_consen 287 ALLALNSCP 295 (395)
T ss_pred HHHHHhcCc
Confidence 888877664
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.1e-05 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLS 196 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 196 (902)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888777776
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=3.5e-05 Score=62.32 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-H-HHHHHHHHccCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-I-TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~-~~l~~~~~~~g~~~~A~~~ 817 (902)
++++|+.+++++++..|. +...+..++.+|.+.|++++|++++++ .+ ..|... . ..++.+|.+.|++++|++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555555555542 333444455555555555555555555 22 112221 1 3445555555555555555
Q ss_pred HHH
Q 048778 818 MNL 820 (902)
Q Consensus 818 ~~~ 820 (902)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00023 Score=75.30 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=86.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
.+......|++++|++.|+++++.+|.+...|..++.+|...|++++|+..++++++ +.|+... ..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 345566677999999999999999999999999999999999999999999999998 5565554 888999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
+++|+..++++++. .|+ .....++..+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999975 564 3444444433
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=5.1e-05 Score=61.33 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCC-chHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVF-PAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~-p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
|+++.|+.+++++.+.... ++... ..++.+|.+.|++++|..++++ .+. .|. ......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444555555555443221 11222 3344444455555555544444 211 121 1222233444444455555544
Q ss_pred HHHH
Q 048778 852 LVSD 855 (902)
Q Consensus 852 ~~~~ 855 (902)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00067 Score=63.78 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK--AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESH 833 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 833 (902)
+.....+..++..+...|++++|+..|+++++....+.. .. ..++.+|.+.|++++|...++++.+. .| +...+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 456677899999999999999999999999875544332 23 88999999999999999999999874 45 35677
Q ss_pred HHHHHHHHhcCC
Q 048778 834 CTVIQGLQSEGR 845 (902)
Q Consensus 834 ~~l~~~l~~~g~ 845 (902)
..++.++...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 778888887776
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.1e-05 Score=49.81 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 048778 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQP 301 (902)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 301 (902)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.001 Score=73.60 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCCh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG--------RIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKY 811 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~ 811 (902)
+.+.|..+|+++++.+|.+..+|..++.+|.... ++..+.+..++.......|.. .. ..++-.+...|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 6889999999999999999999998887765542 234455555554442222222 22 5556666678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++|...++++++. .|+...|..++.++...|+.++|++.+++++...+...
T Consensus 437 ~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 437 DEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 9999999999986 57888999999999999999999999999977765443
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00066 Score=66.51 Aligned_cols=119 Identities=8% Similarity=0.064 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc---cCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK---ERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~---~g~~~~A~~ 816 (902)
..+....-++.-+..+|.|...|..|+..|...|++..|..-|.++.+ +.|++.. ..++.++.. .....++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 577888888888999999999999999999999999999999999998 6666655 566665543 236789999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++++++.. +| ++.+...++..++.+|++.+|...++.|++.....+
T Consensus 215 ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999985 56 568888999999999999999999999988764433
No 161
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00043 Score=60.58 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----AI-TSIIGCYCKERKYDDCLEFMNLILESGFV-P-SFESHCTV 836 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l 836 (902)
+..++..+.+.|++++|.+.|+++.+.. |+. .. ..++.++...|++++|..+++.+...... | ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4445555555555555555555555422 221 11 44555555555555555555555532101 0 12344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 837 IQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 837 ~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+.++.+.|+.++|...++++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 555555555555555555554443
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.75 E-value=0.063 Score=54.29 Aligned_cols=71 Identities=7% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCc
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++|++.. ..+..+-...|++..|..-.+.+.. ..|....|..++++-... |+-.++...+-+.++.+..|.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 3444444 4444445555555555555554443 245555555555554443 555555555555555554443
No 163
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.073 Score=55.03 Aligned_cols=358 Identities=13% Similarity=0.174 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---CCCCCCHHHHHHH
Q 048778 307 TVLIKALCDISLTDKALSLFDEMVVK----RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ---DGHFPGVVTYNVL 379 (902)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~l 379 (902)
+..++++...|++.+++.+++++..+ .+.-+..+|+.++-.+.+ ..|-++.+ ..+-|| |.-+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYem 200 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEM 200 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHH
Confidence 34455566667777777666666543 334567777776666654 23333322 112222 3334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhc
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRM--NKSYKAVHLLKRVVDGGLFPDEI-TYNILVDGFCRE 456 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~ 456 (902)
|-.|.+.=+.-+ .-.-..+.|.......++....-. .+..--++++......-+.|+-. ....+...+.+
T Consensus 201 ilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 201 ILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred HHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 444433211111 100011223333333333333221 11222233333333333334322 22233333333
Q ss_pred CCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh
Q 048778 457 GQLDIALKIFNSMSIFGL----VPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATI-------TALADGHCK 525 (902)
Q Consensus 457 g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~ 525 (902)
+.+++..+-+.+....+ ..-..++..++....+.++...|.+.+.-+... .|+...- ..+.+..|.
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 44555544444433211 112346777777777888888887777766554 2222111 111122221
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH----HHH
Q 048778 526 ----NGKTGEALMIFERMVQNTDLKTPHVLNSFL---DVLCKENK-LKEEYAMFGKILKFGLVPSVVTYTILV----DGL 593 (902)
Q Consensus 526 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li----~~~ 593 (902)
.-+...=+.+++......+. .......++ .-+-+.|. -++|..+++.+++.. .-|...-|.+. ..|
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y 428 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAY 428 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHH
Confidence 11222334445554443221 111112222 23445555 788899999888631 22443333322 222
Q ss_pred HH---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 594 FR---AGNIALAMSMIEVMKLAGCPPNVH----TYTVIING--LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 594 ~~---~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.. ...+..-+.+-+-..+.|++|-.+ .-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++.
T Consensus 429 ~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~ 506 (549)
T PF07079_consen 429 KQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLM 506 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHH
Confidence 22 123444444445555677777443 34444443 4568999998876666655 6799999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
...++++|..++..+ +|+..++++-
T Consensus 507 e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 507 ENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 999999999999875 7777766643
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=8.9e-05 Score=56.43 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+..+...|++++|.+.|+++++.+|.+..++..++.++...|++++|+..|+++++ ..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 34455666999999999999998888999999999999999999999999999887 44553
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=5.2e-05 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 163 PCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVL 195 (902)
Q Consensus 163 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~ 195 (902)
.+|+.+|.++++.|+++.|+.+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00069 Score=59.28 Aligned_cols=97 Identities=8% Similarity=0.034 Sum_probs=70.1
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSI 801 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l 801 (902)
+.+...+..+.+.|++++|.+.++.+++..|.+ ..++..++..+.+.|++++|...++.+....+... ... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445666777777888888888888888776554 45677788888888888888888888876432211 122 677
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 048778 802 IGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77788888888888888888765
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.70 E-value=0.00041 Score=57.63 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQS 842 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~ 842 (902)
..++..+...|++++|+..++++.+. .|+. .. ..++.++...|++++|.+.++...+.. ..+...+..++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 34444445555555555555555442 2222 11 444445555555555555555544431 1122344455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 048778 843 EGRNKQAKNLVSDLF 857 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~ 857 (902)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555543
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.68 E-value=0.081 Score=53.52 Aligned_cols=295 Identities=13% Similarity=0.136 Sum_probs=141.4
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHH
Q 048778 481 FTSIIDGLCK--LGKPELANGFFGLMVKKGISPDEATITALADG--HCKNGKTGEALMIFERMVQNTDLKTPH--VLNSF 554 (902)
Q Consensus 481 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l 554 (902)
|..|-.++.. .|+-..|.+.-.+..+. +..|......++.+ -.-.|+.+.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 34555555554443321 22233333344332 23456677777777776652 2211 12222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAG-CPPNVH--TYTVIINGLC- 629 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~li~~~~- 629 (902)
.-.--+.|..+.|..+-+..-.. .|. ...+.+.+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 22223556666666666555442 222 3455666666667777777777666554422 334432 1222222211
Q ss_pred -h-cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 630 -Q-RGRFKEAEMLLFKMFDLGVSPNHIT-YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 630 -~-~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
. ..+...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+.++.... +.+.|
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~g---- 308 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSG---- 308 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCC----
Confidence 1 1233344443333333 3455322 223345566667777777777766653 44444332221 22333
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA-FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
+.... .+-.+++..+.|++..+...++.+-...|++..|..--+
T Consensus 309 -----------------------------------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 309 -----------------------------------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred -----------------------------------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 11111 111222333336666666666666666777776666666
Q ss_pred HHHHcCCCchHhH-HHHHHHHH-ccCChHHHHHHHHHHHHcCCCC
Q 048778 786 DIMKSGVFPAKAI-TSIIGCYC-KERKYDDCLEFMNLILESGFVP 828 (902)
Q Consensus 786 ~~~~~~~~p~~~~-~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p 828 (902)
.+.. ..|.... ..|.+.-. ..|+-.++...+-+.++..-+|
T Consensus 354 aa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 354 AAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 6655 4455544 44444433 3366666666666666543333
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00066 Score=56.36 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++......|.+..++..++..+...|++++|...+....+
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 555555555555554444444555555555555555555555555443
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.67 E-value=0.0039 Score=61.86 Aligned_cols=163 Identities=7% Similarity=-0.019 Sum_probs=115.0
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFY---NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~ 802 (902)
.+...+......|++++|.+.|+++....|..+... ..++.+|.+.+++++|+..+++.++..+..+.+. ..++
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 344455666777899999999999999988776654 6788999999999999999999998543322222 3333
Q ss_pred HHHHccC---------------C---hHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHHHhcCCH
Q 048778 803 GCYCKER---------------K---YDDCLEFMNLILESGFVPSF------------------ESHCTVIQGLQSEGRN 846 (902)
Q Consensus 803 ~~~~~~g---------------~---~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~l~~~g~~ 846 (902)
.++...+ + ..+|+..++++++. =|+. ..-..++..|.+.|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3321121 1 34677888888864 2331 1112455678999999
Q ss_pred HHHHHHHHHHHhC-CCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 847 KQAKNLVSDLFRY-NGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 847 ~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
.-|+.-++.+++. +..+. ......+..++.+.|..++|.++.+.+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9999999998765 22222 44556778999999999999998877654
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0021 Score=63.08 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCC
Q 048778 641 LFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGS 720 (902)
Q Consensus 641 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (902)
++.-+..+ +-|...|..|...|...|+++.|..-|....+. -.++...+..+...+..+...
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~---------------- 206 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQ---------------- 206 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC----------------
Confidence 33333333 667889999999999999999999999988874 234667777777776555411
Q ss_pred CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 721 SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
....++..+|+++++.+|.|+.+...|+..+.+.|++.+|...|+.|++..
T Consensus 207 --------------------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 207 --------------------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --------------------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 167788899999999999999999999999999999999999999998853
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.001 Score=62.33 Aligned_cols=113 Identities=15% Similarity=0.031 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--hH-HHHHHHHHccCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK--AI-TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~-~~l~~~~~~~g~~~~A~~ 816 (902)
.+..+...+..+.+.. ......|..++..+...|++++|+..|++++.....+.. .. ..++.+|...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665444 334667788999999999999999999999875433322 23 888999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 048778 817 FMNLILESGFVPS-FESHCTVIQGLQ-------SEGRNKQAKNLVSDL 856 (902)
Q Consensus 817 ~~~~~~~~~~~p~-~~~~~~l~~~l~-------~~g~~~~A~~~~~~~ 856 (902)
.++++.+. .|+ ..++..++.++. +.|++++|...++++
T Consensus 94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999874 453 466667777776 788888666666554
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.001 Score=70.32 Aligned_cols=124 Identities=12% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 508 GISPDEATITALADGHCKNGKTGEALMIFERMVQN--TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
+.+.+......+++.+....+++++..++-+.... ....-+.|..++|..|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557777777888877777888888888877665 2223345566888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666767766666666554
No 174
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.00072 Score=67.92 Aligned_cols=152 Identities=14% Similarity=0.034 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCch-HhH-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIM----KSGVFPA-KAI-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~-~~~-~~l~~~~~~~g 809 (902)
.++.|.+.|.+-+++- -....+|-.|++.|+-.|+++.|+...+.=+ +-|-+.. .-. ..+++++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 4556666665544432 1123467788888889999999998765543 2221111 111 78899999999
Q ss_pred ChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCcchhHHHHHHHHhcCC
Q 048778 810 KYDDCLEFMNLILE----SGFV-PSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-----GIEEKAAVLPYIEFLLTGD 879 (902)
Q Consensus 810 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g 879 (902)
+++.|.+.++.... .|-. ........++..|.-..++++|+.+..+-+... ..-....+..|+.++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999987652 2211 123444567777777788999999999855432 2223445668899999999
Q ss_pred cHhHHHHHHHHHHh
Q 048778 880 ELGKSIDLLNLIDQ 893 (902)
Q Consensus 880 ~~~~a~~~l~~~~~ 893 (902)
..++|....+.-.+
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99998877665443
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.61 E-value=0.00028 Score=54.47 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-RIVEADRIMKDIMK 789 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 789 (902)
..+..+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.++++++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 33334444448888888888888888888888888888888888 68888888888776
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=7.4e-05 Score=46.79 Aligned_cols=29 Identities=45% Similarity=0.932 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKG 298 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 298 (902)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0014 Score=69.49 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|+..++++++.+|.+..+|..++.+|...|++++|+..|+++++
T Consensus 51 ~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 51 NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.57 E-value=0.0024 Score=54.72 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCT 835 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 835 (902)
....+++++-..|+.++|+.+|++.+..|+...... ..++..|...|++++|..++++.... .|+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHH
Confidence 456678888889999999999999988876655333 67788888999999999999988864 233 233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++.++...|+.++|+..+-..+.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677888999999888877543
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.017 Score=51.94 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~ 816 (902)
+..||...|++.+.-- ..|+..+..++++....++..+|...++++.+.. |+.-+ ..+++.|...|++++|..
T Consensus 104 r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 104 RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHhcCCchhHHH
Confidence 4444444444433321 3444445555555555555555555555554422 22111 334445555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
-|+.+... -|++..-......+.++|+.++|..-+.
T Consensus 182 afe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 182 AFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 55555543 3444444444444555555555444333
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.00093 Score=62.61 Aligned_cols=76 Identities=5% Similarity=-0.064 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH-------ccC
Q 048778 742 DVEHAFRLRDRIESCGGS---TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC-------KER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~-------~~g 809 (902)
++++|...|++++...+. .+.+|..++..|...|++++|+..+++++. +.|+... ..++..|. ..|
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 666666666666655422 234566666666666777777776666665 2333322 44444444 445
Q ss_pred ChHHHHHHHH
Q 048778 810 KYDDCLEFMN 819 (902)
Q Consensus 810 ~~~~A~~~~~ 819 (902)
++++|...++
T Consensus 128 ~~~~A~~~~~ 137 (168)
T CHL00033 128 DSEIAEAWFD 137 (168)
T ss_pred cHHHHHHHHH
Confidence 5554444433
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.007 Score=62.08 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HhH----HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA---KAI----TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~----~~l~~~~~~~ 808 (902)
++++|.+.|+++.+.. ... ..++..++..+.+.|++++|+++|+++.......+ ... ...+-++...
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 6666666666666553 111 22344555666666666666666666654322111 001 1223344555
Q ss_pred CChHHHHHHHHHHH
Q 048778 809 RKYDDCLEFMNLIL 822 (902)
Q Consensus 809 g~~~~A~~~~~~~~ 822 (902)
|+...|...+++..
T Consensus 210 ~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 210 GDYVAARKALERYC 223 (282)
T ss_dssp T-HHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00012 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGF 193 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 193 (902)
+||+++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 183
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.48 E-value=0.0043 Score=58.35 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+..+...+...|++++|...+++.++....+. ...+..+...+.+.|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----------------------------- 86 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----------------------------- 86 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------------------------
Confidence 3455556666666777777777766665322221 245555555666666
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|...++++++..|.+...+..++..|...|+...+..-++.
T Consensus 87 ----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 87 ----------EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred ----------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 777777777777777777777777777777777765555444333
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.0019 Score=68.26 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=64.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 302 STRTYTVLIKALCDISLTDKALSLFDEMVVK--RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVL 379 (902)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 379 (902)
+......+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+++..++..=..-|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555555555555555443 11112234445666666666666666666555555666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRM 421 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 421 (902)
++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666655555554444445554444444433
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0043 Score=63.63 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=110.4
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHhH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS---GVFPAKAI 798 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~ 798 (902)
+.|...+..+...+++++|.+.|.++.... ..+ ...|...+..|.+. ++++|++.++++.+. .-.|+...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344445555666669999998888876553 111 23455555555444 999999999998642 12344433
Q ss_pred ---HHHHHHHHcc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----
Q 048778 799 ---TSIIGCYCKE-RKYDDCLEFMNLILES----GFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE---- 864 (902)
Q Consensus 799 ---~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~---- 864 (902)
..++..|... |++++|+++++++.+. + .+. ..++..++.++.+.|++++|+++|++........+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 7888889998 9999999999999842 2 222 36778889999999999999999999876543222
Q ss_pred -c-hhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 865 -K-AAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 865 -~-~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
. ..+...+-.++..|+.-.|.+.+++.....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 123344456778999999999999887654
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.27 Score=53.58 Aligned_cols=201 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHH----------HHHhcCChhHHHHHHHHHHHCC
Q 048778 229 CLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIH----------GLCEVGRLDEAFSLKDEMCEKG 298 (902)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~m~~~g 298 (902)
.|.+..|..|.....+.-+++.|...|-+...-.|+ ....-|-. .-.--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi----k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI----KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch----hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 455666666666655556666666666555433222 11111110 1122467777777777665542
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN----AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVV 374 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 374 (902)
.-|..+.+.|++-...++++. .|...| ...++.+.+.+.....+++|.+.+..... .
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~- 825 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T- 825 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h-
Confidence 234455566666555554432 111111 34566666666666667777666655432 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFC 454 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 454 (902)
...+.++.+..++++-..+...+. .|....-.+.+.+.+.|.-++|.+.+-+-.. |. ..+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHH
Confidence 123444554444444443333332 2444455566666677777766655533211 11 2344555
Q ss_pred hcCCHHHHHHHHHH
Q 048778 455 REGQLDIALKIFNS 468 (902)
Q Consensus 455 ~~g~~~~A~~~~~~ 468 (902)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666655443
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.0021 Score=52.60 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 273 TLIHGLCEVGRLDEAFSLKDEMCEKGW-QPSTRTYTVLIKALCDIS--------LTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 566666666665555431 22334445555555555555555555
Q ss_pred HHHHHH
Q 048778 344 LIDRLC 349 (902)
Q Consensus 344 li~~~~ 349 (902)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 554443
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0023 Score=52.43 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=39.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 345 IDRLCREGKIDEANGMCGKMLQDGH-FPGVVTYNVLINGYCKQG--------RIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.++++|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 2233445556666666666666666665
Q ss_pred HHHH
Q 048778 416 EGLC 419 (902)
Q Consensus 416 ~~~~ 419 (902)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.0005 Score=52.88 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=47.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+.|++++|.+.|+++++.+|.+..++..++.+|.+.|++++|.++++++... .|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCH
Confidence 3458999999999999999999999999999999999999999999998874 3554
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.045 Score=54.35 Aligned_cols=193 Identities=16% Similarity=0.078 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 048778 623 VIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-IT---YSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAG 697 (902)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~ 697 (902)
.....+...|++++|++.|+++... .|+. .. .-.++.++.+.+++++|...+++.++. +-.|+. -+.....+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHH
Confidence 3444456677777777777777764 2332 22 234566777788888888888877764 112221 22222222
Q ss_pred HHh--cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 698 LVS--SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 698 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
++. .+. ..+...... + ..........+|.+.|+++++..|.+..
T Consensus 114 ~~~~~~~~--~~~~~~~~~-----------~--------~~~rD~~~~~~A~~~~~~li~~yP~S~y------------- 159 (243)
T PRK10866 114 LTNMALDD--SALQGFFGV-----------D--------RSDRDPQHARAAFRDFSKLVRGYPNSQY------------- 159 (243)
T ss_pred Hhhhhcch--hhhhhccCC-----------C--------ccccCHHHHHHHHHHHHHHHHHCcCChh-------------
Confidence 221 110 000000000 0 0000011456788888999888876653
Q ss_pred CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES-GFVP-SFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
..+|...+..+.+. -......++.-|.+.|.+.-|..-++.+++. .-.| ..+....++.+|.+.|..++|....
T Consensus 160 -a~~A~~rl~~l~~~---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 160 -TTDATKRLVFLKDR---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34444433333220 0001156778888999999999999988853 1122 3477777888898999999998877
Q ss_pred HHH
Q 048778 854 SDL 856 (902)
Q Consensus 854 ~~~ 856 (902)
..+
T Consensus 236 ~~l 238 (243)
T PRK10866 236 KII 238 (243)
T ss_pred HHH
Confidence 664
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.32 E-value=0.02 Score=63.44 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++++| +..+|..++..+...|+.++|.+.|+++..
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555554 345555555555555555555555555555
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.31 E-value=0.0026 Score=63.50 Aligned_cols=87 Identities=8% Similarity=-0.032 Sum_probs=51.0
Q ss_pred hhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCCh
Q 048778 738 LREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKY 811 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~ 811 (902)
.+.|++++|...|+..++..|.+ +.++..++..|...|++++|+..|+++++..+...... ..++.+|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34456677777777776666555 35666666666666777777766666665322111111 4445556666666
Q ss_pred HHHHHHHHHHHHc
Q 048778 812 DDCLEFMNLILES 824 (902)
Q Consensus 812 ~~A~~~~~~~~~~ 824 (902)
++|..+++++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.004 Score=55.56 Aligned_cols=87 Identities=11% Similarity=-0.047 Sum_probs=71.5
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|..+|.-+.-.++.+..-|..|+.++-..|++++|+..|..+.... +++.. ...+.||...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 334455599999999999988888888889999999999999999999998887643 33333 88889999999999
Q ss_pred HHHHHHHHHHH
Q 048778 813 DCLEFMNLILE 823 (902)
Q Consensus 813 ~A~~~~~~~~~ 823 (902)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988877
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.27 E-value=0.0011 Score=51.04 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC-ChHHHHHHHHHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER-KYDDCLEFMNLILE 823 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~ 823 (902)
++..|..++..+...|++++|+..|+++++ ..|+... ..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456677777777777777777777777777 3455544 67777777777 57777777777665
No 195
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.013 Score=61.48 Aligned_cols=143 Identities=8% Similarity=0.010 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 742 DVEHAFRLRDRIE---SCGGSTTDFYNFLVVELCRA---------GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 742 ~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
..+.|..+|.+++ +.+|....+|..++.++... ....+|.++.+++++ +.|++.. ..++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 7889999999999 77788899999988877644 245678888888888 5566655 778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 885 (902)
.|+++.|...|+++... .|+. .+|...+..+.-.|+.++|.+.++++++..+..- ..+....++.|+.+ ..++|+
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999999884 6764 7888888888999999999999999876643322 22333334455544 356666
Q ss_pred HHHH
Q 048778 886 DLLN 889 (902)
Q Consensus 886 ~~l~ 889 (902)
+++-
T Consensus 428 ~~~~ 431 (458)
T PRK11906 428 KLYY 431 (458)
T ss_pred HHHh
Confidence 6654
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0019 Score=50.51 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+.+.+++++|.+.++.++..+|.++..|...+.++...|++++|.+.++++++. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3455569999999999999999999999999999999999999999999999984 455544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.15 Score=48.71 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
+..+++|++-.. ...+.++..+.-.|.+.-...++.+.++..-+.++...+.|++.-.+.|+.+.|...+++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555554332 2345666777777888888888888888765667888888999889999999999999877
Q ss_pred HHCCCCCCHHHHHHHH-----HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 680 VANGCQLNSNVYSALL-----AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 680 ~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.+..-..|..+.+.++ ..+.-+. ++.+|.+.+.+++
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~n---------------------------------------n~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQN---------------------------------------NFAEAHRFFTEIL 279 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheeccc---------------------------------------chHHHHHHHhhcc
Confidence 6532222322222222 2222222 8999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
..+|.++..-|.-+-++.-.|+..+|++..+.|.. ..|...+
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 99999999999888888888999999999999988 5566655
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.13 E-value=0.013 Score=50.30 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+.++|+.+|++.++.+... ...+..++..|...|++++|+.++++...
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444443111 23444444555555555555555555444
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0022 Score=48.68 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++..+...|++++|...++++++. .| +...+..++.++...|++++|+..++++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555543 23 2355555555555555555555555555443
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.02 Score=55.30 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=104.9
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~ 802 (902)
.+...+......|++++|.+.|+++....|.+ ..+...++.++.+.|++++|...++..++.-+...... ..++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34455666677779999999999999987554 56788899999999999999999999988654333222 3444
Q ss_pred HHHHc-----------cCChHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHH
Q 048778 803 GCYCK-----------ERKYDDCLEFMNLILESGFVPSF------------------ESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 803 ~~~~~-----------~g~~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
.++.. .+...+|...++.+++. =|+. ..-..++..|.+.|++..|+.-+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44332 23456888888888864 2321 11234567889999999999999
Q ss_pred HHHHhCCCC-Cc-chhHHHHHHHHhcCCcHhHHHH
Q 048778 854 SDLFRYNGI-EE-KAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 854 ~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
+.+++.-+. +. ...+..++.++.+.|..+.+.+
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 998876322 22 3355677888999998885543
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0089 Score=55.75 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048778 265 RPNSVTFTTLIHGLCEV-----GRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 339 (902)
..|-.+|..+++.|.+. |.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 35666666666666543 5555566666667677777777777766665543 2111 00111111
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048778 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGR 388 (902)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 388 (902)
..-|- .+-+-|.+++++|...|+-||..++..+++.|.+.+.
T Consensus 112 -----F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 1344566777777777777777777777777665543
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.06 E-value=0.013 Score=59.91 Aligned_cols=116 Identities=7% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIING-LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 345566666666666666666666665432 2223333333333 22234455566666666644 34455556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNS---NVYSALLAGLVSSN 702 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~ 702 (902)
+.+.|+.+.|..+|++.+.. +.++. ..|...+..=.+.|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcC
Confidence 66666666666666666543 22221 24444444444444
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.05 E-value=0.011 Score=60.42 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHH
Q 048778 199 DYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCR-GNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHG 277 (902)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 277 (902)
+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|.....+-.+ .++.+.|.++|+...+ .++.+...|..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 34444455555555555555555554332 1112222222222122 2334445555555554 233444455555555
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 048778 278 LCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 278 ~~~~g~~~~A~~~~~~m~~~ 297 (902)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.97 E-value=0.014 Score=58.41 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHcC-CCC-CHHH
Q 048778 761 TDFYNFLVVE-LCRAGRIVEADRIMKDIMKSGVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILESG-FVP-SFES 832 (902)
Q Consensus 761 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~ 832 (902)
...+...+.. +.+.|++++|+..|+.+++.. |+.. . ..++.+|...|++++|...|+.+++.- -.| ..+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3344444444 466799999999999999854 4432 2 888999999999999999999998641 111 2477
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+..++.++...|+.++|..++++.++..+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777888899999999999999998766543
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.028 Score=50.31 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048778 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQ 838 (902)
Q Consensus 759 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (902)
.........+..+...|++++|..+|+-+.-.+......+..|+.+|-..+++++|+..+..+...+ .-|+..+...+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHH
Confidence 3445567788888999999999999999877432222222888889999999999999999887543 234555677899
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 048778 839 GLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 839 ~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++...|+.++|..-|+.+...
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999998764
No 206
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.017 Score=56.90 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=119.4
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---hH--HHHHHHHHccCC
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK---AI--TSIIGCYCKERK 810 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~--~~l~~~~~~~g~ 810 (902)
..|..|+..+|-...+++++..|.|..++.---.++.-.|+.+.-...+++++.. ..++. .+ ..++.++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4566779999999999999999999999999999999999999999999998753 34444 33 566777889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----chhHHHHHHHHhcCCcHhHHH
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-----KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~ 885 (902)
+++|.+..++..+.+ .-|..+...+++++...|+..++.+++.+-- -.+..+ ...| +..-.+...+.|+.|+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te-d~Wr~s~mlasHNyW-H~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE-DDWRQSWMLASHNYW-HTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc-cchhhhhHHHhhhhH-HHHHhhhcccchhHHH
Confidence 999999999998864 4467777888999999999999999998731 111111 1123 3344466779999999
Q ss_pred HHHHHHHhc
Q 048778 886 DLLNLIDQV 894 (902)
Q Consensus 886 ~~l~~~~~~ 894 (902)
++++.=.-+
T Consensus 268 eIyD~ei~k 276 (491)
T KOG2610|consen 268 EIYDREIWK 276 (491)
T ss_pred HHHHHHHHH
Confidence 998754433
No 207
>PRK11906 transcriptional regulator; Provisional
Probab=96.88 E-value=0.041 Score=57.95 Aligned_cols=109 Identities=9% Similarity=-0.020 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+..+|.++.+++++.++.|+.+...++.++...++++.|...|+++.. +.|+... ...++.+...|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998 6688776 777888889999999999999
Q ss_pred HHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 820 LILESGFVPSF---ESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 820 ~~~~~~~~p~~---~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+..+. .|-- ......++.|+ ....++|+.+|-+
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 98774 5643 33333444554 4567888888876
No 208
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.88 E-value=0.021 Score=53.35 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 352 GKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ----------------GRIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 352 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..|+..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444444444555555444444321 12345566666666666666666666666
Q ss_pred HHHHhcC
Q 048778 416 EGLCRMN 422 (902)
Q Consensus 416 ~~~~~~g 422 (902)
+.+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 6655444
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=1 Score=49.30 Aligned_cols=203 Identities=14% Similarity=0.084 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCc--------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 048778 194 VLSAIDYRSVINALCKSGLVRAGEMFFCRVLKH-GFCL--------DTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASY 264 (902)
Q Consensus 194 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 264 (902)
.|.+..|..+...-...-.++.|+..|-+.... |+.. +.....+=|.+ --|++++|.+++-.|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 477777877777666666677777666443221 1110 11111111222 248899999999888763
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048778 265 RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPS----TRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT 340 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 340 (902)
| ..|..+.+.|++-...++++. .|-..| ...++.+...++....+++|.+.+..-..
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 3 235566677777777666543 121111 34677888888888888888888865321
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
-...+.+|.+..++++-+.+-..+.+ |....-.+..++...|.-++|.+.+-+--. |. ..+..|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence 12356677777777776666555544 555667788899999999988887654321 11 34566777
Q ss_pred cCCHHHHHHHHHHH
Q 048778 421 MNKSYKAVHLLKRV 434 (902)
Q Consensus 421 ~g~~~~A~~~~~~~ 434 (902)
.+++.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888776654
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.15 Score=49.35 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHh
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLG--VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNS-NVYSALLAGLVS 700 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-~~~~~l~~~~~~ 700 (902)
...+...|++.+|+..|+.+...- -+--....-.++.++.+.|++++|...+++.++. +-.|.. ..+-.++.++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 334556666677777666666431 0111334445666667777777777777766653 111111 111111111111
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
... +.. ......+...+|...|+.+++..|.+.. ..+|
T Consensus 92 ~~~--~~~--------------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y--------------~~~A 129 (203)
T PF13525_consen 92 QIP--GIL--------------------------RSDRDQTSTRKAIEEFEELIKRYPNSEY--------------AEEA 129 (203)
T ss_dssp HHH--HHH---------------------------TT---HHHHHHHHHHHHHHHH-TTSTT--------------HHHH
T ss_pred hCc--cch--------------------------hcccChHHHHHHHHHHHHHHHHCcCchH--------------HHHH
Confidence 110 000 0001112677888888888888777663 4445
Q ss_pred HHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 048778 781 DRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~ 850 (902)
...+..+.+. -......++..|.+.|.+..|..-++.+++. =|+ .+....++..+.+.|..+.|.
T Consensus 130 ~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 130 KKRLAELRNR---LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4444444321 0011156788899999999999999998864 233 256677888888889887544
No 211
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.83 E-value=0.0044 Score=47.51 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+.|++++|++.|+++....+....+...++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555442211111114444445555555555555554443
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.76 E-value=0.012 Score=61.57 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=74.3
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchH------------
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG---VFPAK------------ 796 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~------------ 796 (902)
......|+..+.+.-++.-+++++.+|.-..+|..|+. .......+|+++++++++.| +..+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34456788889999999999999998888888887764 22345788888888887543 11110
Q ss_pred ---------hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 797 ---------AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 797 ---------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.. ..++.++.+.|+.+||++.+++|.+.....| ......|+.+|...+.+.++..++.+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 01 3445555556666666666666653211111 233444555555666666666665553
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.29 Score=46.94 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHH--
Q 048778 199 DYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIH-- 276 (902)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~-- 276 (902)
.-+++++.+...|.+.-....+.++++...+.++.....|.++-.+.||.+.|...|+...+..+ ..|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 45666777777788888888888888877677788888888888888888888888887765411 223333333322
Q ss_pred ---HHHhcCChhHHHHHHHHHHHC
Q 048778 277 ---GLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 277 ---~~~~~g~~~~A~~~~~~m~~~ 297 (902)
.+.-++++..|...+.+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc
Confidence 233344555555555554443
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.027 Score=57.66 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD-DCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~-~A~~~~ 818 (902)
++.+|++.-++.++.+|+|.-++..-+.++...|+++.|+..|+++++ +.|++.. ..|+.+-.+...+. ...++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666665 4444433 33333333322222 224455
Q ss_pred HHHH
Q 048778 819 NLIL 822 (902)
Q Consensus 819 ~~~~ 822 (902)
.+|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.16 Score=54.69 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSF-- 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-- 830 (902)
..+.+..+..+...++..+.+...+.-|-++|++|-+. ..+.......+++.+|..+.++..+. .||.
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~ 808 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYM 808 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc--cccccc
Confidence 33334455666777777777888888999999887431 35778889999999999999987663 4543
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ---------ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ---------~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
+-+...-.++.+.|+.+||..+++++..
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1112222466777777778777777533
No 216
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.65 E-value=0.97 Score=46.21 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHH---HccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCY---CKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~---~~~g~~~~A~~~~ 818 (902)
..++|.++++.+....|..+..+..-+..+.+.++.+++.+++.+|+..-..++.....++..+ .. .....|...+
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~l 180 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCL 180 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHH
Confidence 6677888888887666777887777777777789999999999999975432444434444433 33 3346677777
Q ss_pred HHHHHcCCCCCHHHHH--HHHH---HHHhcCC------HHHHHHHHHHH---HhCCCCCcchhH-H----HHHHHHhcCC
Q 048778 819 NLILESGFVPSFESHC--TVIQ---GLQSEGR------NKQAKNLVSDL---FRYNGIEEKAAV-L----PYIEFLLTGD 879 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~--~l~~---~l~~~g~------~~~A~~~~~~~---~~~~~~~~~~~~-~----~l~~~~~~~g 879 (902)
..++...+.|....+. .++. .....++ .+...++++.. ...+..+..... . .-+..+++.+
T Consensus 181 d~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k 260 (278)
T PF08631_consen 181 DYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAK 260 (278)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777544566553121 1111 1122211 44444444432 233444443221 1 2245578899
Q ss_pred cHhHHHHHHHHHH
Q 048778 880 ELGKSIDLLNLID 892 (902)
Q Consensus 880 ~~~~a~~~l~~~~ 892 (902)
+|++|.+.++--.
T Consensus 261 ~y~~A~~w~~~al 273 (278)
T PF08631_consen 261 NYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.61 E-value=0.091 Score=57.90 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCc-hHhH-HHHHHHHHccCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG--VFP-AKAI-TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~-~~l~~~~~~~g~~~~A~~~ 817 (902)
+.+.|.++++.+.+..|....-...-++.+...|+.++|++.|+++.... .+. .... .-+++++.-.++|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 89999999999999999888888888999999999999999999876421 111 2222 7889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHH-HHHHHHHhcCCH-------HHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHC-TVIQGLQSEGRN-------KQAKNLVSDLF 857 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~-~l~~~l~~~g~~-------~~A~~~~~~~~ 857 (902)
+..+.+.+ ..+...|. ..+.++...|+. ++|.++++++.
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999753 33344443 344566778888 89999998864
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.61 E-value=0.87 Score=45.18 Aligned_cols=222 Identities=20% Similarity=0.161 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCP-PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654321 12466667777778888888888877777642 23455666667777777778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 674 KIVSFMVANGCQLNSNVYSALLA-GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 674 ~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
+.+.........+ ......... .+...+ ++++|...+++
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------------------------~~~~a~~~~~~ 155 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELG---------------------------------------DYEEALELYEK 155 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHH
Confidence 8888777532222 111112222 455555 88888888888
Q ss_pred HHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048778 753 IESCGG---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKYDDCLEFMNLILESGF 826 (902)
Q Consensus 753 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (902)
+....+ .....+......+...++.++|...+.++... .++ ... ..+...+...+++++|...+......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 231 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-- 231 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--
Confidence 866444 23445555555567778888888888888773 333 222 77777788888888888888888764
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 827 VPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 827 ~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.|+ ...+......+...|..+++...+++..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 343 34455555555566778888888887755543
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.016 Score=60.85 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=68.7
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD---FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAIT 799 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 799 (902)
.+.+.+.+.+.+..+.+.|++++|...|+++++.+|.+.. +|+.++.+|...|+.++|++.++++++.+ +... .
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f-~ 147 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKF-S 147 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhH-H
Confidence 4445577788888888899999999999999888888774 48889999999999999999999888742 1111 1
Q ss_pred HHHH--HHHccCChHHHHHHHHHHHHcC
Q 048778 800 SIIG--CYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 800 ~l~~--~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
.+.. .+....+..+..++++.+.+.|
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1110 1112223346666677666655
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.021 Score=58.43 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=91.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGG---------------STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
.+..+++.|++..|...|++++..-. .-..+++.|+.+|.+.+++.+|++...+.+. ..|+++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 34567777799999999888654421 1135677888899999999999999999998 556665
Q ss_pred H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 048778 798 I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRN-KQAKNLVSDLFRY 859 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~-~~A~~~~~~~~~~ 859 (902)
- ..-+.+|...|+++.|...|+++++. .|+. .+-..++.+-.+..+. +...++|.+|...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 88899999999999999999999884 7866 4445555555555444 4457888888654
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.4 Score=51.88 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048778 177 LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFC 221 (902)
Q Consensus 177 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 221 (902)
.+-+.+.-+++|.+.|-.|+.... ...|+-.|++.+|.++|.
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 344556667778888877877643 334666788888888874
No 222
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.48 E-value=0.24 Score=46.02 Aligned_cols=177 Identities=11% Similarity=-0.032 Sum_probs=90.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCc
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLAGLVSSNKA 704 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~ 704 (902)
|-..|-+.-|..-|.+... +.|+ ...||.+.--+...|+++.|.+.|+...+ +.|. ....|.-+..|
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~Y------ 144 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY------ 144 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeee------
Confidence 4445555666655555554 3455 55667776667777777777777777765 3332 11111111111
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhcCCHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD--FYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 782 (902)
--|+++-|.+-+...-+.+|.|+. .|..+. ...=+..+|..
T Consensus 145 ----------------------------------Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~t 187 (297)
T COG4785 145 ----------------------------------YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKT 187 (297)
T ss_pred ----------------------------------ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHH
Confidence 112777777777777666666653 222211 12224555554
Q ss_pred HH-HHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 783 IM-KDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP------SFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 783 ~~-~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
-+ ++... ..+... ..++.-|...=.. ..+++++....-+. -.++|..++.-+...|+.++|..+|+
T Consensus 188 nL~qR~~~---~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 188 NLKQRAEK---SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHh---ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 43 33322 122333 5555555432222 22333333211011 13677777777777788888877777
Q ss_pred HHH
Q 048778 855 DLF 857 (902)
Q Consensus 855 ~~~ 857 (902)
-++
T Consensus 262 Lai 264 (297)
T COG4785 262 LAV 264 (297)
T ss_pred HHH
Confidence 653
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.42 E-value=0.0035 Score=39.83 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
|+++++.+|.++.+|+.|+..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.011 Score=46.71 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.++..++.++...|++++|+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555555444
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.40 E-value=1 Score=43.69 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=104.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCc
Q 048778 628 LCQRGRFKEAEMLLFKMFDLG--VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
-.+.|++++|.+.|+.+...- -+-...+...++-++.+.+++++|+..+++.++. +-.||. -|...+.++..--..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 456677888888888777431 1223455566677778888888888888877764 333332 232233333322100
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+. ..+. +....+|..-|++.++..|++.-+ .+|....
T Consensus 123 ~~----~~rD-------------------------q~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i 159 (254)
T COG4105 123 DD----VTRD-------------------------QSAARAAFAAFKELVQRYPNSRYA--------------PDAKARI 159 (254)
T ss_pred Cc----cccC-------------------------HHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHH
Confidence 00 0000 014566777778888777766532 2222222
Q ss_pred HHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 785 ~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..+... -... ..++.-|.+.|.+..|..-++.+++. +.-. .+.+..+..+|...|-.++|...-+-+
T Consensus 160 ~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 160 VKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 222110 0011 56778888888888888888888864 2222 256667777888888888887775543
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.87 Score=47.57 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 588 ILVDGLFRAGNIALAMSMIEVMKLAG---CPPNVHTYTVIINGLCQ---RGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
.++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|..++..+....-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33445777777888888887776531 11112222234445555 7788888888877554445677777777776
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 662 AHAS---------TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 662 ~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
.|-. ....++|+..|.+.-+ +.|+...--.++..+...|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcC
Confidence 6521 1235677777776654 3454433333333344444
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.067 Score=52.16 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILES-GFVP-SFESHCTVIQG 839 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~ 839 (902)
+..+..+.+.|++.+|...|...++..+...-.. .-|+.++...|++++|...|..+.+. +-.| -++.+..++.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3344455666677777777777776542221111 56666677777777777777776642 1122 24667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 048778 840 LQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~~~ 859 (902)
+.+.|+.++|...|++..+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77777777777777776554
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.37 E-value=0.74 Score=44.69 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=112.6
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC 804 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~ 804 (902)
.+..-+....+.|++++|.+.|+.+....|.+ ..+...++.++.+.+++++|+...++.....+...++. ...+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 33444555666779999999999999887544 56778888999999999999999999988654433333 333333
Q ss_pred HH-------ccCC---hHHHHHHHHHHHHc----CCCCCH------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 805 YC-------KERK---YDDCLEFMNLILES----GFVPSF------------ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 805 ~~-------~~g~---~~~A~~~~~~~~~~----~~~p~~------------~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++ ...+ ..+|..-|+.++++ .+.||. ..-..+++-|.+.|.+.-|..-++++++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 32 1223 34445555555532 233442 1113466788999999999999999988
Q ss_pred CCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 859 YNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 859 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.-.... ...+..+..+|.+.|-.++|.+.-+-+...
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 732211 223445678899999999998887766543
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.22 Score=45.24 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-----KSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 798 (902)
++++|.+..+.++..+|.+...|..++.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 88888888888888888888888888888888888888888888774 3466666554
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.033 Score=54.20 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh---HHHHHH
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA---ITSIIG 803 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~l~~ 803 (902)
.+..+..+.+.|++.+|...|...++..|.+ +.++..|+..+...|++++|..+|..+.+.-++.... ...|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5566677778889999999999999998665 5689999999999999999999999998765433222 278889
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 048778 804 CYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+....|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999975
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.011 Score=46.81 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchH---hH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSG--VFPAK---AI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
..+++.++..|...|++++|+..|+++++.. ..++. .. ..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578888999999999999999998887431 22222 22 7888899999999999999988764
No 232
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.02 Score=44.51 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 803 GCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
..|.+.+++++|.+.++++++. .| ++..+...+.++.+.|++++|...++++++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3455566666666666666553 23 335555566666666666666666666654443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.043 Score=57.70 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 757 GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+|.++..|+.++.+|.+.|++++|+..|+++++ +.|+.. . .+++.+|.+.|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999 556643 3 99999999999999999999999874
No 234
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.29 E-value=1.7 Score=45.02 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHC 243 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (902)
+|..+...-...|+.+-|..+++. .|+. .--+..+.+.|+.+.| +.+..+.| .||. +|..|++..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRA---SKQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 466677777788888888887763 3443 2334556667776666 45666666 4443 3444554333
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048778 244 RGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKD 292 (902)
Q Consensus 244 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (902)
+.. . -++|.-+... |.. ..+...||+..+.+.-.++|.
T Consensus 68 ~l~-~---s~f~~il~~~----p~a---~~l~~~~~r~~~~~~L~~~y~ 105 (319)
T PF04840_consen 68 KLS-L---SQFFKILNQN----PVA---SNLYKKYCREQDRELLKDFYY 105 (319)
T ss_pred hCC-H---HHHHHHHHhC----cch---HHHHHHHHHhccHHHHHHHHH
Confidence 322 1 1333333321 332 233445666555555444443
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.34 Score=48.16 Aligned_cols=45 Identities=18% Similarity=-0.020 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
-+++|.+.-++.++.++.|.-+..+++..+...|+++++.+..++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555555555555554444555555555555555544433
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.56 Score=48.91 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQL---NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...++-.|....+++..+++++.+....... ...+--...-++-+..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn------------------------------ 193 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN------------------------------ 193 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc------------------------------
Confidence 3355556888899999999999987531111 1111112222333311
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchHhH-HHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRA---------GRIVEADRIMKDIMKSGVFPAKAI-TSI 801 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~-~~l 801 (902)
+.|+.++|.+++..++... ++++.+|..++..|... ...++|+..|.+..+ +.|+... .++
T Consensus 194 ------~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~ 265 (374)
T PF13281_consen 194 ------KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINA 265 (374)
T ss_pred ------cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHH
Confidence 1349999999999955554 89999999999876532 257899999999988 5576655 444
Q ss_pred HHHHHccCChH----HHHHHH---HHHH-HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 802 IGCYCKERKYD----DCLEFM---NLIL-ESGFVP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 802 ~~~~~~~g~~~----~A~~~~---~~~~-~~~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+-.+...|... +..++- ..+. ++|... +-+.+..++.+..-.|+.++|.+.+++|.+..
T Consensus 266 AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 266 ATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44554444322 222222 1222 344322 33555677788888999999999999997664
No 237
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.24 Score=44.21 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=63.9
Q ss_pred hhhhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCC
Q 048778 737 FLREMDVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERK 810 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~ 810 (902)
+.+.+..++|+..|..+.+.+ .....+....+....+.|+...|+..|.++-.....|...- ..-+..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344556666666666666555 11222233344455566666666666666655444443331 233444556666
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 811 YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++....-.+.+...+ .| -...-..|+-.-.+.|++.+|...|+.+..-...|
T Consensus 148 y~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 666655555554322 12 11222344445556666666666666654433333
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.17 E-value=0.081 Score=44.57 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=28.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|+.+.|++.|.+.+..-|..+.+|+.-+.++.-.|+.++|++-++++++
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555544
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.17 E-value=0.31 Score=48.93 Aligned_cols=116 Identities=8% Similarity=-0.085 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCchH-------hH-HHHHHHH
Q 048778 742 DVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS--GVFPAK-------AI-TSIIGCY 805 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~-------~~-~~l~~~~ 805 (902)
.++++.+.|+.+.+.. ..| ...+..|+..|.+..++++|.-...++.+. .+..++ .. ..+.-++
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 6777777777766543 222 345777888888888888877666555431 111111 11 5566677
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 806 CKERKYDDCLEFMNLILE----SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
...|....|.+.-+++.+ .|-.+. ......++++|...|+.|.|..-|++++
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 777777777777665543 333332 2455667788888888888888888764
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.13 E-value=0.52 Score=40.14 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=80.7
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-H---HHHHHHHHccCChHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-I---TSIIGCYCKERKYDD 813 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~---~~l~~~~~~~g~~~~ 813 (902)
.-.|.+++..++..+.... .+..-++..+.-....-+-+-..++++.+=+ .-|-. . ..++.+|...|...+
T Consensus 13 ildG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---H
T ss_pred HHhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHH
Confidence 3456999999999998874 4445555555555544444444555544422 11211 1 566777766654433
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
........+..+|+.++--++++.+.+ ...+++.....+..+|.+.|+..++.+++.+.=+
T Consensus 88 ------------------~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ------------------YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333444567788888888888888765 3355666777888899999999999999998888
Q ss_pred cCcc
Q 048778 894 VHYR 897 (902)
Q Consensus 894 ~~~~ 897 (902)
+|.+
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8865
No 241
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.03 E-value=2.3 Score=44.07 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048778 481 FTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCK 560 (902)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (902)
.+.-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++... ..+|..|-.++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3344555556666666666655442 35666677777777777777665554321 2345667777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIE 607 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (902)
.|+..+|..+...+ + +..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHH
Confidence 77777776665551 1 1344566667777777665533
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.00 E-value=0.2 Score=50.31 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-----H-HHHHHHHHccCChHHHHHHHHHHHH--cCCCC-C----
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-----I-TSIIGCYCKERKYDDCLEFMNLILE--SGFVP-S---- 829 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p-~---- 829 (902)
....++.++.-.+.++++++.|+.+.+-.-..++. . ..|+..|....++++|.-+..++.+ ..+.. |
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34557777778889999999999987532222221 1 7888899999999999999988874 12221 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----chhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 830 --FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-----KAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 830 --~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
.....+++-+|...|++-+|.+.-+++.+...... ......+.+.|...|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12334566788889999999999999766543322 23345677888888988887765554
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.95 E-value=2.6 Score=44.04 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFG-LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTY-TVII 625 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 625 (902)
..+|...++...+..-++.|..+|.++.+.| +.+++..+++++.-++ .|+...|.++|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4556777777778888899999999998887 6678888888887554 67888888988876554 3454433 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 626 NGLCQRGRFKEAEMLLFKMFDLGVSPN--HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
.-+...++-..|..+|+...+. +..+ ...|..+++.-..-|+...+..+-++|.. .-|...+-....+.|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 6667778888888898866543 2233 56788888888888999988888888876 34544444444444433
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.89 E-value=2 Score=42.39 Aligned_cols=219 Identities=18% Similarity=0.167 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 562 NKLKEEYAMFGKILKFGLV-PSVVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPNVHTYTVIINGLCQRGRFKEAEM 639 (902)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (902)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554442211 12456666677777888888888877777642 224455666677777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCcCCcccccccc
Q 048778 640 LLFKMFDLGVSPNHITYSILVR-AHASTGRLDHAFKIVSFMVANGCQL----NSNVYSALLAGLVSSNKASGVLSISTSC 714 (902)
Q Consensus 640 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 714 (902)
.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------ 181 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALG------------ 181 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhc------------
Confidence 888887654222 222223333 67888999999999988865 233 2222223333333444
Q ss_pred CCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 715 HSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS-TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
+.++|...+.+.....+. ....+..+...+...++++.|...+..... ..
T Consensus 182 ---------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~ 232 (291)
T COG0457 182 ---------------------------RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LD 232 (291)
T ss_pred ---------------------------CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hC
Confidence 899999999999998877 688899999999999999999999999988 34
Q ss_pred ch--HhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 794 PA--KAITSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 794 p~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
|+ .....+...+...+.++++...+.+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 22255555566777899999999988864
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.83 E-value=0.12 Score=44.83 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLG 241 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (902)
..++.+++.++++.|+.+....+.++...-+ .+... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4556667777777777777766666554322 21100 0000 11233456888888888888
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhc
Q 048778 242 HCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEV 281 (902)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 281 (902)
|+..|++..|.++.+...+.++++-+..+|..|+......
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9888899999999998888888877888888888765543
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.77 E-value=0.35 Score=41.11 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV 792 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (902)
+-+.-.+++..+.+.+.+++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus 101 kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 101 KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 778888888888776678888888899999999999999999998888774
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.62 Score=46.04 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=105.8
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
.|++.+|...|..++...|.+...-..|+.+|...|+.+.|..++..+-...-...... ..-+..+.+.....+...+-
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34999999999999999999999999999999999999999999988743211111111 23345566666666666666
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcchhHHHHHHHHhcCCcHh-HHHHHHHHH
Q 048778 819 NLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN--GIEEKAAVLPYIEFLLTGDELG-KSIDLLNLI 891 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~a~~~l~~~ 891 (902)
.++.. .| |...-..++..|...|+.++|.+.+=.+++.+ .. +...-..+++.+.-.|.-+ .+.+..++|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66655 56 56777788999999999999999888887663 33 2334567777776655333 455555544
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=5 Score=45.58 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCc
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDE 880 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (902)
++..+.+..+.+++..+.+..-+. ++..|..+...+.+.+..+...++..+.++.=...+...-..++..+.+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 455566677777777776665332 5566767777777777655555555554332111111112345667777654
Q ss_pred H
Q 048778 881 L 881 (902)
Q Consensus 881 ~ 881 (902)
.
T Consensus 787 l 787 (933)
T KOG2114|consen 787 L 787 (933)
T ss_pred e
Confidence 3
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=3.2 Score=47.04 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 048778 236 TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTL----IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIK 311 (902)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 311 (902)
..-+..+++...++.|..+.+.-. -+..+...+ .+-+.+.|++++|...|-+-... ++|. .+|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 344555566666666666554432 122222222 22344567777777666554432 2222 2344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048778 312 ALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA 391 (902)
Q Consensus 312 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 391 (902)
-|....++.+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 455555555666666666666655 44445566677777777666555544433 2211 1112233444444455555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 392 AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRV 434 (902)
Q Consensus 392 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~ 434 (902)
|.-+-..... +......++ -..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4444333221 222222222 2345666666666554
No 250
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.41 E-value=4.2 Score=42.60 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVY-SALLA 696 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~ 696 (902)
..|...++.-.+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+--... -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456666666666666777888888887776 5667777777777655 46777777777765542 3444333 23444
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhc
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST--TDFYNFLVVELCRA 774 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 774 (902)
.+...+ +-+.|..+|+..++.-..+ ...|..++..=...
T Consensus 475 fLi~in---------------------------------------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 475 FLIRIN---------------------------------------DEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred HHHHhC---------------------------------------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 455555 6666777776555443222 45666666666777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
|+...|..+-+.+.+ ..|...+
T Consensus 516 G~lN~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 516 GSLNNVYSLEERFRE--LVPQENL 537 (660)
T ss_pred cchHHHHhHHHHHHH--HcCcHhH
Confidence 788777777777776 4454443
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=6.4 Score=44.18 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
+.+.-+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+.+ .++..|..++..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence 34444445556677777766665554 356666666677777777777655544332 23666777777788
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048778 560 KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEV 608 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (902)
+.|+.++|..++.+... .. -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~------l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG------LQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCC------hH---HHHHHHHHhccHHHHHHHHHH
Confidence 88888888777765432 11 456677777777777765433
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.28 E-value=0.24 Score=43.40 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGS---TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV 792 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (902)
+...+....+.|++++|.+.|+.+....|. ...+-..|+.+|.+.|++++|+..+++.++..+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 334445555666888888888888887643 345667788888888888888888888888543
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.25 E-value=5.7 Score=47.04 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRN 846 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~ 846 (902)
+|...|+|.+|+.+..++.. ..+... ..|+.-+...++.-+|-++...... +|. -.+..|++.-.|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHH
Confidence 34444566666666655532 122222 4555556666666666666555433 121 122335555556
Q ss_pred HHHHHHHHH
Q 048778 847 KQAKNLVSD 855 (902)
Q Consensus 847 ~~A~~~~~~ 855 (902)
++|+.....
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666655544
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.23 E-value=0.19 Score=45.66 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
++..+...|++++|..+.+.+.... +.|...|..++.+|...|+..+|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555433 334445555555555555555555555444
No 255
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.21 E-value=6.1 Score=43.31 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 442 DEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALAD 521 (902)
Q Consensus 442 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 521 (902)
+..+|...+..-.+.|+.+.+.-+|+...-. +..-...|-..+......|+.+-|..++....+-.++..+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666666667777777777777766431 111223344444444445666666666655544332222222211112
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 568 (902)
..-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2233556777777776666542 222 12222234444555555554
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=1.7 Score=43.06 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
.....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+-..--.........-+..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa---- 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA---- 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh----
Confidence 3456677777777777776542 33345556677777777777777777766532111111111111222222222
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
...+...+ +.-...+|.|...-..|+..|...|+.++|.+.+-.
T Consensus 218 -----------------------------------~~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 218 -----------------------------------ATPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred -----------------------------------cCCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222 223334577888888888888888888888888777
Q ss_pred HHHcCCCchH-hH-HHHHHHHHccC
Q 048778 787 IMKSGVFPAK-AI-TSIIGCYCKER 809 (902)
Q Consensus 787 ~~~~~~~p~~-~~-~~l~~~~~~~g 809 (902)
++++...-.+ .. ..++..+.-.|
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcC
Confidence 7654322222 22 56666665555
No 257
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.28 Score=44.92 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+-+...|++++|..-|.++++. +++...-..+++ |.+.+..+.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIl----------------------------------y~Nraaa~iKl 147 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSIL----------------------------------YSNRAAALIKL 147 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHH----------------------------------HhhhHHHHHHh
Confidence 4467789999999999888874 343332222221 11222333444
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++.|++--.++++++|....++..-+.+|.+..++++|++-|+++++.
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 48999999999999998888888888888999999999999999999884
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.15 E-value=0.7 Score=51.08 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHH------HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESCG-GSTTDF------YNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~-~~~~~~------~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~ 808 (902)
|-+.+.+.+.+..+.+ -..+.+ |...+..++. ....+.|.++++.+.+ ..|+... ..-++.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHh
Confidence 8889999998887754 222222 2222222222 4478899999999998 4577666 6777888999
Q ss_pred CChHHHHHHHHHHHHc-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHH-HHHHhcCCcH---
Q 048778 809 RKYDDCLEFMNLILES-GFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPY-IEFLLTGDEL--- 881 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~-~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~--- 881 (902)
|+.++|++.++++... .--| ....+..+++++.-.++|++|.+.+.++.+.... +...|..+ +.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhh
Confidence 9999999999987631 1112 2355667888999999999999999999775433 33344333 3445567888
Q ss_pred ----hHHHHHHHHHHhcCc
Q 048778 882 ----GKSIDLLNLIDQVHY 896 (902)
Q Consensus 882 ----~~a~~~l~~~~~~~~ 896 (902)
++|.++++++....-
T Consensus 360 ~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 889999888766544
No 259
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.94 Score=41.77 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-----HHHHHHHHccCChHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTD-F--YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-----TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~l~~~~~~~g~~~~A~~ 816 (902)
+.....+++...++.+.. . -..++..+...|++++|+..++..+.. ..|... ..|+......|.+++|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444445555554433321 1 234456788889999999999988753 223222 678888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
.++...+.++.+ .....-+++|...|+.++|+.-|++++....+|
T Consensus 148 ~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 148 TLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 998887654333 233456788999999999999999998886443
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.04 E-value=0.35 Score=40.91 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHH
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES-GFVPS--FESHCTVIQGLQ 841 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~l~ 841 (902)
-+-++.+.|+.+.|++.|.+.+. +-|.... ++-+.++.-+|+.++|++=++++++. |-.-. ...|..-+..|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34578899999999999999998 5566555 88999999999999999999999863 32211 245555666788
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 048778 842 SEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~~~~~ 862 (902)
..|+.+.|..-|+.+.+.|-+
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 899999999999999888744
No 261
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.45 Score=45.13 Aligned_cols=121 Identities=7% Similarity=0.070 Sum_probs=95.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
-++.+.....+..|+..|.+++..+|..+..|..-+.++.+..+++.+.+--.++++ +.|+.+. ..++.+......
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 345556666999999999999999999999999999999999999999999999988 7898888 888889999999
Q ss_pred hHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 811 YDDCLEFMNLIL----ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 811 ~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+++|+..+.++. +..+.|.......|..+-.+.=...++..+.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999884 344555556666665554444444555554444
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.99 E-value=0.65 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+..+..-+....+.|++++|++.|+.+...-+...-.. ..++.+|.+.|++++|...+++.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455566667778888888888888877543332222 67778888888888888888888764
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.95 E-value=0.081 Score=36.06 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVV 769 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 769 (902)
+..+...|++++|.+.|+++++.+|.|+..|..|+.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 334444449999999999999999999999988864
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=2.2 Score=38.49 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=103.7
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
.+|..+....+-..|..+++ +.+.++.++|+.-|..+.+.|...-++. ...+....+.|+..+
T Consensus 48 ~yw~~s~as~sgd~flaAL~---------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~ 112 (221)
T COG4649 48 TYWQTSRASKSGDAFLAALK---------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAA 112 (221)
T ss_pred ehhcccccccchHHHHHHHH---------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHH
Confidence 34544455555455544443 4677889999999999998887655555 677778899999999
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSF---ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~---~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
|...|.++-...-.|.. ..-..-+..+...|-+++...-++-+..-+.+--...-..|+-+-++.|++..|.+.|+.
T Consensus 113 AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 113 AVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 99999999865444533 122334467889999999999888753333222233445677778899999999999999
Q ss_pred HHhcC
Q 048778 891 IDQVH 895 (902)
Q Consensus 891 ~~~~~ 895 (902)
+....
T Consensus 193 ia~Da 197 (221)
T COG4649 193 IANDA 197 (221)
T ss_pred HHccc
Confidence 87753
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.81 E-value=5.5 Score=40.73 Aligned_cols=123 Identities=13% Similarity=-0.008 Sum_probs=70.0
Q ss_pred HhcCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCcC-----
Q 048778 173 AKLDLGFVAYAVFVKLIADG--FVLSAI------DYRSVINALCKSGLVRAGEMFFCRVLKH--------GFCLD----- 231 (902)
Q Consensus 173 ~~~g~~~~a~~~~~~~~~~g--~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~----- 231 (902)
.+.|+++.|..++.+....- ..|+.. .|+.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46778888888888876542 223221 3444444443333777777777665443 11222
Q ss_pred HHHHHHHHHHHhccCCH---HHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 232 THICTSLVLGHCRGNDL---KEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 232 ~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 297 (902)
..++..++.+|...+.. ++|..+.+.+...++.+ ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23555666777666644 34666666666543322 334444455555577777777777777765
No 266
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.64 E-value=8.5 Score=42.23 Aligned_cols=185 Identities=13% Similarity=0.048 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFL 555 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (902)
++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+-..+..+. ...+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHH
Confidence 45568888888888999999999988877642 12233455555555556688888887777665543333332 22222
Q ss_pred HHH-HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH---
Q 048778 556 DVL-CKENKLKEEYAMFGKILKFGLVPSV-VTYTILVDGLFRAGNIALAM---SMIEVMKLAGCPPNVHTYTVIING--- 627 (902)
Q Consensus 556 ~~~-~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~--- 627 (902)
..+ -..|+.+.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++.........+. +...+.--
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~--i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG--ILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc--hhHHHHHHHHH
Confidence 333 34578999999999888753 443 22233345556777777777 33333332211121 22222211
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 628 --LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG 667 (902)
Q Consensus 628 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 667 (902)
+.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22356788888888888876 4677777777777665544
No 267
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.55 E-value=0.25 Score=44.89 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG----------RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g 809 (902)
-++.|++.++.....+|.|...++..+.++.+.. .+++|+.-|++++. +.|+... ..++.+|...+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888776553 34566666777777 5676544 77777765444
Q ss_pred -----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 810 -----------KYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 810 -----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+++|...|+++.+. +|+.+.|..-.... ++|=++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 266677777777663 79988887665444 34555555554443
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.49 E-value=11 Score=42.87 Aligned_cols=248 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 595 RAGNIALAMSMIEVMKL-------AGCPPNVHTYTVIINGLCQRG-----RFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+.| .|+...+-..+.-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 33455555555555544 43 2223444555555532 4566777777777666 4444333222221
Q ss_pred HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 663 HAS-TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 663 ~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
... ..+...|.++|....+.|..+. .. .+.. |...|. .+.+
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~--~la~-~y~~G~------------------gv~r---------------- 378 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILA-IY--RLAL-CYELGL------------------GVER---------------- 378 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHH-HH--HHHH-HHHhCC------------------CcCC----------------
Confidence 111 2346677777777776653321 11 1111 112220 0000
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH---Hc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY---CK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~---~~----~g~~~~ 813 (902)
+.+.|..++.++.+++.+...........+.. ++++.+...+..+.+.|..-.... ..+.... .. ..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 77777777777777662222222222223333 666666666666655443222222 1111111 11 224566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh----cCCcHhHHH
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQSE----GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL----TGDELGKSI 885 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~ 885 (902)
+...+.+....| +......+++.|..- .+.+.|...|.++...+ ......++..+- -.. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 666666665543 233444555555332 23677777777765555 222223332221 123 56666
Q ss_pred HHHHHHHh
Q 048778 886 DLLNLIDQ 893 (902)
Q Consensus 886 ~~l~~~~~ 893 (902)
+.++....
T Consensus 530 ~~~~~~~~ 537 (552)
T KOG1550|consen 530 RYYDQASE 537 (552)
T ss_pred HHHHHHHh
Confidence 66666544
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.26 E-value=0.73 Score=42.97 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=57.6
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
+-..|-..-|+--|...+...|.-+.++|.|+-.+...|+++.|.+.|+...+ +.|...+ .+-+-++.--|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 33445677777778888888888888888888888888888888888888887 4454333 2223334445666666
Q ss_pred HHHHHHHHH
Q 048778 815 LEFMNLILE 823 (902)
Q Consensus 815 ~~~~~~~~~ 823 (902)
.+-+.+.-+
T Consensus 153 q~d~~~fYQ 161 (297)
T COG4785 153 QDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHh
Confidence 665554443
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.20 E-value=3.3 Score=44.21 Aligned_cols=53 Identities=6% Similarity=-0.003 Sum_probs=42.9
Q ss_pred hhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.++.|+.+||++.++++.+..|. +......|+.++...+.+.++..++.+.-+
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444999999999999887644 456788899999999999999999988754
No 271
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.15 E-value=0.74 Score=40.05 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
|..++..++.++++.|+++....+.+..-. +.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777666666654432 221110 00000 0112346678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 048778 662 AHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~ 702 (902)
+|+..|++..|+++++...+. +++.+..+|..|+.-.....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 888888888888888887764 66667888888887655444
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.13 E-value=13 Score=42.30 Aligned_cols=77 Identities=14% Similarity=0.022 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKE----RKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ----SEGRNK 847 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~----~~g~~~ 847 (902)
+.+.+...+.+....| .......+.+.|... .+.+.|...+..+...+ ......++..+. ... +.
T Consensus 454 ~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred chhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 4555566666665433 222225556555443 24677777777776543 333333444332 233 57
Q ss_pred HHHHHHHHHHhC
Q 048778 848 QAKNLVSDLFRY 859 (902)
Q Consensus 848 ~A~~~~~~~~~~ 859 (902)
.|.++++++.+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776443
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.56 Score=43.12 Aligned_cols=94 Identities=23% Similarity=0.178 Sum_probs=71.2
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTT-----DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER 809 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g 809 (902)
..+++.|++++|..-|..+++.-|+.+ ..|..-+.++.+.+.++.|+.-..++++.++.-..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 446667799999999999998875543 455566678888999999999999998854332333356677899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCH
Q 048778 810 KYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~ 830 (902)
.+++|+.=++++++. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 999999999999874 5654
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.13 E-value=1.1 Score=48.86 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=95.5
Q ss_pred HHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 628 LCQRGRFKEAEMLLFKMF-DLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
..-.++++++.++.+.-. -..+ +....+.++..+.+.|..+.|+++...-.. -.+...+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg---- 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLG---- 332 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT----
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcC----
Confidence 344567777666554111 1111 244567777778888888888877544321 123344555
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
+++.|.++.++ .+++..|..|+......|+++-|++.|++
T Consensus 333 -----------------------------------~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 333 -----------------------------------NLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp ------------------------------------HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888765443 34777899999999999999999999988
Q ss_pred HHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 787 IMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 787 ~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..+ ...|+..|.-.|+.+.-.++.+.+...| -++....++.-.|+.++..+++.+
T Consensus 373 ~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 AKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp CT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 633 1467778888899888888887777665 233333444566888888888777
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.05 E-value=0.32 Score=48.39 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=71.9
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCCh
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKY 811 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~ 811 (902)
..+..|+++|.+++|+..|.+.+...|.|++.+..-+.+|.+.+++..|+.-...++..+-.--..+..-+.+-...|+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 34577889999999999999999999999999999999999999999998888877652100001113334444556677
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 048778 812 DDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~ 830 (902)
.+|.+=.+..++ ++|..
T Consensus 182 ~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhHHHHHh--hCccc
Confidence 777777777766 36653
No 276
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=6.1 Score=37.97 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ 630 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (902)
|..-..+|-...++++|...+.+..+ +...+... +-..+.++.|.-+.++|... +.-...|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33334556666677777666666553 11111111 11233345555555555442 2223345555666666
Q ss_pred cCCHHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMF 645 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~ 645 (902)
.|..+.|...+++.-
T Consensus 104 ~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA 118 (308)
T ss_pred hCCcchHHHHHHHHH
Confidence 776666666665543
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.98 E-value=5.3 Score=40.88 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++.+.+++.|.+.|+.-+..++-+......... ...+.. ....|..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~------------------------~~~~~~---------~~~ra~~ 124 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE------------------------KEDYDE---------IIQRAKE 124 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc------------------------cccHHH---------HHHHHHH
Confidence 3456678888888888887766654333332211 001111 7788999
Q ss_pred HHHHHHhcC-----CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccC--ChHHH
Q 048778 749 LRDRIESCG-----GSTTDFYNFLVVELCRAGR----IVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKER--KYDDC 814 (902)
Q Consensus 749 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g--~~~~A 814 (902)
+|+.|.+.. +.|......|+. ..++ .+.++.+|+.+.+.|....+.. ..++....... ...++
T Consensus 125 iy~~mKk~H~fLTs~~D~~~a~lLA~---~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~ 201 (297)
T PF13170_consen 125 IYKEMKKKHPFLTSPEDYPFAALLAM---TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARV 201 (297)
T ss_pred HHHHHHHhCccccCccchhHHHHHhc---ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHH
Confidence 999999986 333333333332 2222 4677888999988888887766 33333222211 25678
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
.++++.+.+.|+++...+|..++-.-.-.+..++....+.+
T Consensus 202 ~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~e 242 (297)
T PF13170_consen 202 IELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKE 242 (297)
T ss_pred HHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHH
Confidence 89999999999888887787776544444444344433333
No 278
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.81 E-value=3 Score=37.40 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=85.1
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCC
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERK 810 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~ 810 (902)
..+..+...+..+.....++.+...++.++..++.++..|++.+ .++.++.++. .++... ..++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 33444444558999999999999988888889999999999774 3444455442 122222 667888888899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhc
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT 877 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (902)
++++.-++.++-. +...+..+... ++.+.|++++++. .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 9999999888632 12223333333 8899999988871 245577777766654
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.63 E-value=1.3 Score=48.11 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLC 349 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (902)
-.+.+++-+-+.|..+.|+++-.+-.. -.+...+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 456666666667777777665433211 123344566666666554332 25556666666666
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429 (902)
Q Consensus 350 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 429 (902)
+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666665543 44455555556666555555555554431 3333344444455555544
Q ss_pred HHH
Q 048778 430 LLK 432 (902)
Q Consensus 430 ~~~ 432 (902)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.62 E-value=0.14 Score=34.93 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+|..++..|...|++++|+++|+++++ ..|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 3566777777777777777777777777 3455543
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.62 E-value=0.49 Score=45.93 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=41.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 562 NKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG----------------NIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 444545555666666777777777777666543321 2234555666666666666666666666
Q ss_pred HHHHhcCC
Q 048778 626 NGLCQRGR 633 (902)
Q Consensus 626 ~~~~~~g~ 633 (902)
+++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 66555443
No 282
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.39 E-value=0.55 Score=45.59 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048778 265 RPNSVTFTTLIHGLCE-----VGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 339 (902)
..|-.+|-+++..+.. .+.++--...++.|.+-|+.-|..+|+.||+.+-+-. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3566667666666643 3456666667788888888888888888877654321 1221 1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Q 048778 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI-IAAFELLALM 399 (902)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 399 (902)
++....-.|-+ +-+=+.+++++|...|+.||-.+-..|+++|.+.+.. .+..+++-.|
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22222222222 2334678888888888888888888888888877653 2333444444
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.33 E-value=5.2 Score=35.81 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555566666666666655542 45556666666666543 2333333332 11222233456666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
+.++++.-++.++.. +...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666666665521 11222223333 667777766654 124556666665554
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.13 E-value=1.4 Score=41.18 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH---cCCCCCHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE---SGFVPSFESHC 834 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~ 834 (902)
...+..++..|++.|+.++|++.|.++.+....+.... ..++......|++..+..++.++.. .+-+++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45688999999999999999999999999877777766 7788888999999999999988874 22223322222
Q ss_pred HHH--HHHHhcCCHHHHHHHHHHH
Q 048778 835 TVI--QGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 835 ~l~--~~l~~~g~~~~A~~~~~~~ 856 (902)
... -.+...|++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 222 2334678999999888775
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=9.5 Score=36.73 Aligned_cols=138 Identities=11% Similarity=0.005 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 516 ITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR 595 (902)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (902)
|.....+|....++++|...+.+..+- ...+... +-....++.|.-+.+++.+. +--+..|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 333345566666777776666555431 1111111 11223455555555555542 1123345566677888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL---G--VSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
+|.++.|-..+++.-+. .+..++++|++++++.... + ...-...+....+.+.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 88877777666655431 2233455566655554321 1 0111234445556667777777
Q ss_pred HHHHHHHHH
Q 048778 671 HAFKIVSFM 679 (902)
Q Consensus 671 ~A~~~~~~m 679 (902)
+|-..+.+-
T Consensus 168 Eaa~a~lKe 176 (308)
T KOG1585|consen 168 EAATAFLKE 176 (308)
T ss_pred HHHHHHHHh
Confidence 776655543
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.75 E-value=0.1 Score=33.66 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
|..++.+|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777777777777777777543
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=1.2 Score=42.13 Aligned_cols=136 Identities=11% Similarity=0.051 Sum_probs=79.6
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcC-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCG-----GSTTD-FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I 798 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~ 798 (902)
.+.|...+..+-.+.++..|=..|-++-+.. ..|.. +|.-...+ .+.++.++|...++..++ +-.+.. +
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aie--Iyt~~Grf~ 110 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIE--IYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHH--HHHhhhHHH
Confidence 4555555555555557777766666654443 22233 33333333 444578888777777665 222211 1
Q ss_pred ------HHHHHHHHcc-CChHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 799 ------TSIIGCYCKE-RKYDDCLEFMNLILES--GFVP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 799 ------~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
..++..|... .++++|+..++++-+. |-+. ....+..++..-...|.+.+|+.+|++........+.
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3556666654 6888888888887742 2111 2245555555556778899999999997666554443
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.63 E-value=0.26 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA 795 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (902)
.+|..++..|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4577778888888888888888888777 4454
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=3.3 Score=38.36 Aligned_cols=115 Identities=5% Similarity=-0.046 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSF--ESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
+.....+++...+....-.. ..++..+...|++++|...++..+...-+.+. ..-..+++++...|.+|+|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555554332222222 56677899999999999999988753111111 33345778899999999999999
Q ss_pred HHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 854 SDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 854 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+.....++. ...-..-++.+...|+.++|..-+++..+.+
T Consensus 150 ~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 875333332 2234556789999999999999999988875
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.43 E-value=0.29 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.42 E-value=0.24 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|..++..+...|++++|++.|+++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777776
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.28 E-value=24 Score=39.97 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 698 (902)
.+.+--+..+...|+..+|.++-.+.. -||...|..-+.++...++|++-+++-+.+.. +.-|.-+...|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344555666777788888887766654 57888888888888888888887777666532 23444466777
Q ss_pred HhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 048778 699 VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIV 778 (902)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 778 (902)
.+.| +.+||.+.+.+.... . -...+|.+.|++.
T Consensus 755 ~~~~---------------------------------------n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 755 LKQG---------------------------------------NKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVK 787 (829)
T ss_pred Hhcc---------------------------------------cHHHHhhhhhccCCh----H----HHHHHHHHhccHH
Confidence 7777 777777777665431 1 4566777778877
Q ss_pred HHHHHHHH
Q 048778 779 EADRIMKD 786 (902)
Q Consensus 779 ~A~~~~~~ 786 (902)
+|.++.-+
T Consensus 788 eAad~A~~ 795 (829)
T KOG2280|consen 788 EAADLAAE 795 (829)
T ss_pred HHHHHHHH
Confidence 77766443
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.18 E-value=18 Score=38.46 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSP---NHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
....+|..++..+.+.|+++.|...+..+...+... +......-+..+...|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344578888999999999999999999888643111 344445556777888999999998888876
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.51 E-value=3.3 Score=38.78 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHH----
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYI---- 872 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 872 (902)
..++..|++.|+.++|.+.+.++.+....+. ...+..++++....|++..+..++.++.......+......-+
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 6889999999999999999999998655554 3677788888999999999999999986554333322222212
Q ss_pred -HHHhcCCcHhHHHHHHHHH
Q 048778 873 -EFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 873 -~~~~~~g~~~~a~~~l~~~ 891 (902)
-.++..|++.+|-+.|-..
T Consensus 120 gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHhchHHHHHHHHHcc
Confidence 2245678998887776543
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.50 E-value=5.3 Score=36.03 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+.+++..++..+.-+.|..+..-..-+..+...|+|.+|+.+++.+.+.. |.... ..++.|+...|+. .=..+.+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~-~Wr~~A~ 101 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP-SWRRYAD 101 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh-HHHHHHH
Confidence 88888888888888888888888888888899999999999999987644 44444 4444455455543 2233444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 820 LILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
++.+.+ +|+.+.. ++..+........|..
T Consensus 102 evle~~--~d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 102 EVLESG--ADPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred HHHhcC--CChHHHH-HHHHHHHhccccchhh
Confidence 555543 3333332 3344444444444443
No 296
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=2.3 Score=40.51 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGR 845 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~ 845 (902)
+.|....++..|+..|.+++. +.|..+. ..-+.++.+..+++.+..--.++++ +.|+. .....++.++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 345566789999999999988 6677755 7778888899999998888888877 47765 555667788888899
Q ss_pred HHHHHHHHHHHHh----CCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 846 NKQAKNLVSDLFR----YNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 846 ~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+++|+..++++.+ .++.+....+..|..+-.+.-...+...+.+++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999999843 356677778877777765555555555544443
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.84 E-value=22 Score=36.71 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=79.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcC
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKAS 705 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 705 (902)
..+++..|...+......+ +......+...|.. ..+..+|.+++..+.+.|..+ ....|...|......
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv- 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGV- 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCc-
Confidence 4566777777777776643 22333344444432 245667777777666544322 222233333222100
Q ss_pred CccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc----C---CH
Q 048778 706 GVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST-TDFYNFLVVELCRA----G---RI 777 (902)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~----g---~~ 777 (902)
..+..+|...|+++.+.+-++ ..+...++..|..- + +.
T Consensus 126 ----------------------------------~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 126 ----------------------------------PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred ----------------------------------ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 006777777777777766333 33355555555443 1 22
Q ss_pred HHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048778 778 VEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 825 (902)
..|...|.++-..+ .......++..|.. ..+..+|...+++..+.|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 35666676666644 11111444444432 236667777777776655
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.59 E-value=7.2 Score=35.19 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 048778 766 FLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQS 842 (902)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~ 842 (902)
.+++.-.+.++.+++..+++-+.- +.|.... ..-++.+...|++.+|..+++.+.+.. |. +..-..++.+|..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 344455677899999999999988 6677666 666778899999999999999987642 32 3333455566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHH
Q 048778 843 EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKS 884 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 884 (902)
.|+. +-..+-+++++.+..|+.. .++..+........|
T Consensus 91 ~~D~-~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 91 LGDP-SWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred cCCh-HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 6663 2223333444445444443 455555554444433
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.53 E-value=46 Score=40.00 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Q 048778 371 PGVVTYNVLINGYCKQG--RIIAAFELLALMEK 401 (902)
Q Consensus 371 ~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 401 (902)
|+ .-...+|..|.+.+ .+++|++...+...
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44 44456778888877 67777777777664
No 300
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.23 E-value=0.83 Score=45.60 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=67.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
.+.|.++|.+++|+..|...+... +.|.+++..-..+|.+...+..|..-...++.. -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~-- 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRM-- 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHH--
Confidence 566888888888888888777642 337888888888888888887777666655431 122334444444
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL 767 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 767 (902)
..-...|...+|.+-++..+++.|.+...-..+
T Consensus 173 ------------------------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 173 ------------------------------QARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred ------------------------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 222234588888888888888887766544433
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.95 E-value=7.9 Score=34.30 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERK 810 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~ 810 (902)
+.+++..+++.+.-+.|.....-..-++.+...|+|.+|+.++..+.+.+....-....++.|+...|+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 788888888888877777777777777788888888888888888876542221111444444444444
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.65 E-value=0.86 Score=28.60 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566666777777777777777665543
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.59 E-value=16 Score=33.41 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 290 LKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 290 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
.++.+.+.++.|+...|..+|+.+.+.|++....++ ...++-+|.......+-.+. +....+.++--.|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444455556666666666666666554433332 22333334333332221111 2223333333333332
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048778 370 FPGVVTYNVLINGYCKQGRIIAAFELLALM 399 (902)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (902)
=...+..++..+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112444555566666666666665553
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.40 E-value=4 Score=40.88 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA-----NGCQLNSNVYSAL 694 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 694 (902)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555556666666666666666553 45566666666666666666666666665554 3666666666555
Q ss_pred HHH
Q 048778 695 LAG 697 (902)
Q Consensus 695 ~~~ 697 (902)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.30 E-value=3.8 Score=40.99 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK-----SGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 797 (902)
+.+.+.+.++++++.+|-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...
T Consensus 168 ~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 168 RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 999999999999999999999999999999999999999999998865 34555444
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.26 E-value=0.91 Score=28.57 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45666666777777777777777765543
No 307
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.24 E-value=4.1 Score=40.66 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=80.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDD 813 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~ 813 (902)
-+..|+..+..+-++.-..+++.+|.-..+|..|+. .+..-..+|+.+++++++.+ +.+..-...+.+.|...+
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchh
Confidence 345677777777788888888888777777776654 33445788888998887643 111111122222222222
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSFESH--CTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~--~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
| +.++ +-+.-+| ..++-+-.+.|+..||.+.++.+.+.- +..--.+...|+.+++...-|.++..++-+
T Consensus 265 a------~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 265 A------QLRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred h------hhhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1221 2233333 234445556777777777777754332 111123445666666666556665555544
Q ss_pred H
Q 048778 891 I 891 (902)
Q Consensus 891 ~ 891 (902)
-
T Consensus 337 Y 337 (556)
T KOG3807|consen 337 Y 337 (556)
T ss_pred h
Confidence 3
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.20 E-value=3.8 Score=37.52 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR-----------IVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g 809 (902)
-+++|+.-|++++..+|....++..++.+|...+. +++|.+.|+++.+ ..|++.. ..-+...
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH----
Confidence 67889999999999999999999999999887753 5666777777776 5677665 3333333
Q ss_pred ChHHHHHHHHHHHHcCC
Q 048778 810 KYDDCLEFMNLILESGF 826 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~ 826 (902)
.+|-++..++.+.+.
T Consensus 124 --~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGL 138 (186)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HhhHHHHHHHHHHHh
Confidence 456777777766543
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.82 E-value=3.3 Score=43.53 Aligned_cols=132 Identities=10% Similarity=0.007 Sum_probs=96.8
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
.+.....+...|..|++-.|.+-+...+...|.++.............|+++.+...+..+... +.....+ ..+++..
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 4455567778899999999998888888888888887777788899999999999988766442 3333344 7788888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 806 CKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+.|++++|....+.|+...++. ++.....+-.--..|-++++.-.+++.....
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 89999999999999998654432 2222111112224577899999999986554
No 310
>PRK09687 putative lyase; Provisional
Probab=88.64 E-value=30 Score=35.23 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=8.3
Q ss_pred CCHhhHHHHHHHHHhcCC
Q 048778 266 PNSVTFTTLIHGLCEVGR 283 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~ 283 (902)
+|...-...+.++++-|.
T Consensus 66 ~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 66 KNPIERDIGADILSQLGM 83 (280)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444554444
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.56 E-value=32 Score=35.35 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 048778 566 EEYAMFGKILKFGLVPSVVTYTILVDGLFR--A----GNIALAMSMIEVMKLAGC---PPNVHTYTVIINGLCQRGR--- 633 (902)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~--- 633 (902)
+...+++.|.+.|+..+..+|-+..-.... . .....|..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666665554442222221 1 124567777777776421 2344445554433 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 634 -FKEAEMLLFKMFDLGVSPNH--ITYSILVRAHASTGR--LDHAFKIVSFMVANGCQLNSNVYSALL 695 (902)
Q Consensus 634 -~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~l~ 695 (902)
.+++..+|+.+.+.|+..+- ...+.++........ ..++.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34556666667666655542 223333332222211 346677777777777777666655443
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=12 Score=41.05 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=73.6
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~ 817 (902)
.+.|+++.|.++..+. .+..-|..|+++....|++..|.+.|.++.+. ..|+-.+...|+-+.-..+
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHH
Confidence 3455888888776655 46788999999999999999999999988652 3466667777887766666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
-....+.| ..+ ...-+|...|+++++.+++.+
T Consensus 715 a~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 66666655 222 223356789999999999887
No 313
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.68 E-value=28 Score=36.39 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 749 LRDRIESCGGSTTDFYNFLVVELCRAG------------RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
-+++.++.+|.|..+|..++..--..- ..+.-+.+++++++++ |+... ..++..+.+..+.++.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHH
Confidence 456667777999999999887544332 2466778999999874 44444 7778888888899999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC------CC----CCcchhHHHHH-------H
Q 048778 815 LEFMNLILESGFVP-SFESHCTVIQGLQ---SEGRNKQAKNLVSDLFRY------NG----IEEKAAVLPYI-------E 873 (902)
Q Consensus 815 ~~~~~~~~~~~~~p-~~~~~~~l~~~l~---~~g~~~~A~~~~~~~~~~------~~----~~~~~~~~~l~-------~ 873 (902)
.+.+++++.. .| +...|...+.... ..-.+++....|.++++. +. .+.......++ .
T Consensus 85 ~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 85 AKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 9999999975 34 4455554444332 233577777777776532 11 00011111222 2
Q ss_pred HHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 874 FLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 874 ~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
.+..+|..+.|+.+++.+.+-.+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHcC
Confidence 345699999999999999887763
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.53 E-value=23 Score=32.52 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred HHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048778 254 VFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKR 333 (902)
Q Consensus 254 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 333 (902)
+...+.+. +++|+...|..+|+.+.+.|++.. +..+...++-+|.......+-.+. +....+.++=-.|.++
T Consensus 16 YirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 33344443 666777777777777777776543 334445556666555544442222 2233344444444432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048778 334 CKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALME 400 (902)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (902)
=...+..++..+...|++-+|.++....... +......++.+-.+.++..--..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1114456667777788888888777665321 22233445555555555444444444333
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.17 E-value=5.9 Score=39.49 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHh-----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 226 HGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV-----TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 300 (902)
.|...++.+...++..--...+++.+...+-++... |+.. +-.+.++ ++-.-++++++.++..=++.|+.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs----~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS----PNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcC----cchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccc
Confidence 344555555566666666667788888877777653 3221 1112222 33344677888888888888888
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048778 301 PSTRTYTVLIKALCDISLTDKALSLFDEMVVK 332 (902)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 332 (902)
||.++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888888777766654
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.89 E-value=1 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+|..++..|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777777766
No 317
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.44 E-value=0.52 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048778 818 MNLILESGFVP-SFESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 818 ~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~ 850 (902)
++++++. .| +..+|..++.+|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445543 45 3477777777777778777775
No 318
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.15 E-value=12 Score=36.17 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=59.2
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCchHhH---HHHHHHHHccCCh-------HHHHHHHHHHHHcCCCC-----CHH
Q 048778 771 LCRAGRIVEADRIMKDIMK----SGVFPAKAI---TSIIGCYCKERKY-------DDCLEFMNLILESGFVP-----SFE 831 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~----~~~~p~~~~---~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~ 831 (902)
+.....+++|++.|..++- .+..|.... ..++|.|...|+. ..|.+.|++..+..-.| +..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3444567777777766642 122333222 7889999988884 44555555555332222 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
....++....+.|+.++|...+.+++..+-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 445677788889999999999999887765544
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.96 E-value=51 Score=35.00 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=28.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
..+.-+.|+++...+....... ..++...|.++... +.++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 3455566777764444433332 12344455544433 66777777777666654
No 320
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=70 Score=36.42 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 594 FRAGNIALAMSMIEVMKLAGCPPNVHTY----TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
...|+..+|.+++.--+-..-.+ ...| ..+.-++..+|......+++.+.++..-.+....=.+|.-++...|.-
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 45677777777776554331011 1111 122334445555555777766666443223333333444444444433
Q ss_pred HHHHHHHHHHHH
Q 048778 670 DHAFKIVSFMVA 681 (902)
Q Consensus 670 ~~A~~~~~~m~~ 681 (902)
. .++|+..++
T Consensus 447 ~--~eiYe~lKe 456 (929)
T KOG2062|consen 447 N--EEIYEKLKE 456 (929)
T ss_pred c--HHHHHHHHH
Confidence 2 344444443
No 321
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.73 E-value=77 Score=36.80 Aligned_cols=152 Identities=11% Similarity=-0.004 Sum_probs=79.3
Q ss_pred ccHHHHHHHHH--------HHHhcCCCCHHHHHHH---HHHHHhcCC--HHH--HHHHHHHHHHcC-CCc--hHhH--HH
Q 048778 741 MDVEHAFRLRD--------RIESCGGSTTDFYNFL---VVELCRAGR--IVE--ADRIMKDIMKSG-VFP--AKAI--TS 800 (902)
Q Consensus 741 ~~~~~A~~~~~--------~~~~~~~~~~~~~~~l---~~~~~~~g~--~~~--A~~~~~~~~~~~-~~p--~~~~--~~ 800 (902)
|+.+.|...|. .....++.+.....+. +..+...+. ..+ +.++++.+...- -.| +..+ ..
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 39999999998 4444444333322222 223333332 223 666666654311 112 2222 33
Q ss_pred HHHHHHccC--ChHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cchhHH
Q 048778 801 IIGCYCKER--KYDDCLEFMNLILES---GFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE---EKAAVL 869 (902)
Q Consensus 801 l~~~~~~~g--~~~~A~~~~~~~~~~---~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 869 (902)
+.+++...- ...++...+.+..+. ..... ...++.+...+. .|+..|.......+....... ....|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 344443222 334666666554421 11111 134455555555 788888777777765443333 455675
Q ss_pred HHHHH-----HhcCCcHhHHHHHHHHHHh
Q 048778 870 PYIEF-----LLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 870 ~l~~~-----~~~~g~~~~a~~~l~~~~~ 893 (902)
.+..+ +-..|+.++|....++...
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 55544 4558999999998887653
No 322
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.71 E-value=7.4 Score=31.49 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCC
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERK 810 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~ 810 (902)
...++..++.+|.|......++..+...|++++|++.+-.+++.....+. .. ..++..+...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34556667778999999999999999999999999999999876544422 22 666666665555
No 323
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.43 E-value=45 Score=33.84 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMK----SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
-..++...+..||+.|+.+.|++.+.+..+ .|.+-|... ..++-.|....-+.+-++-.+.+.+.|-+.+-..-
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 356777888899999999999887766544 355555555 66777777777788888888888887777664222
Q ss_pred HHHHHH-HH-hcCCHHHHHHHHHHHHhC
Q 048778 834 CTVIQG-LQ-SEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 834 ~~l~~~-l~-~~g~~~~A~~~~~~~~~~ 859 (902)
...-.+ |+ .-.++.+|-.+|-..+..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 222111 22 345688888888776533
No 324
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.65 E-value=30 Score=37.07 Aligned_cols=134 Identities=12% Similarity=0.020 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcC--CCchHhH----HHHHHHHHccCChH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM---KSG--VFPAKAI----TSIIGCYCKERKYD 812 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~p~~~~----~~l~~~~~~~g~~~ 812 (902)
+...+.+-.+.......+.+.....-...++.+|++.+|.+++...- +.| +.|.-.. +.|+-.+.+.|.+.
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~ 300 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQ 300 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHH
Confidence 44444444444333333444444455566677777777777654431 111 1121111 45555566666777
Q ss_pred HHHHHHHHHHH-------cCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 813 DCLEFMNLILE-------SGFVPS----------FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 813 ~A~~~~~~~~~-------~~~~p~----------~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
-+..+|.++++ .|+.|. .+.....+-.|...|+.-.|.+-|.++... +..++..|..+..+|
T Consensus 301 ~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 301 ASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 77766666653 344442 122333455666788888888888876544 345667788877777
Q ss_pred h
Q 048778 876 L 876 (902)
Q Consensus 876 ~ 876 (902)
.
T Consensus 380 i 380 (696)
T KOG2471|consen 380 I 380 (696)
T ss_pred H
Confidence 4
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.43 E-value=86 Score=36.29 Aligned_cols=87 Identities=8% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc--
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRAHAST-- 666 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~-- 666 (902)
...+.-.|+++.|++.+-+ ..+...|.+.+.+.+.-| |-.......-..+.... -.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567778888777766 112244444444433322 22111111112232111 011124566677777653
Q ss_pred -CCHHHHHHHHHHHHH
Q 048778 667 -GRLDHAFKIVSFMVA 681 (902)
Q Consensus 667 -g~~~~A~~~~~~m~~ 681 (902)
.+..+|.+++--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 566677777666543
No 326
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.32 E-value=1.2 Score=44.79 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=81.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~ 816 (902)
..|.+++|++.|...++++|+....|..-+..+.+.++...|+.-+..+.+ +.||..- -.-..+..-.|++++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 355899999999999999999999999999999999999999999988887 5566554 333445556789999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
.+....+.++.+....+.. .+.-..+..++-...+++
T Consensus 204 dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHH
Confidence 9999988777776544322 223333444444444444
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.00 E-value=31 Score=30.75 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048778 772 CRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGR 845 (902)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~ 845 (902)
...++.+++..+++.+.- +.|+... ..-++.+...|++.+|..+++++.+.+.. .+..-..++.++...|+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 347899999999999987 6676665 66677889999999999999999875322 12233344555555555
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.86 E-value=2.5 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.+++.|+..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777654
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=11 Score=37.80 Aligned_cols=105 Identities=13% Similarity=0.280 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 507 KGISPDEATITALADGHCKNGKTGEALMIFERMVQNT---DLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
.|.+....+...++..-.....++.+...+-++.... ..++. +....+.. +-.-+.++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 3445555666666666666677777777777665531 11111 11222333 3334566788888777788888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAG 613 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (902)
.+++.+|+.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888877776543
No 330
>PRK09687 putative lyase; Provisional
Probab=83.52 E-value=55 Score=33.36 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=98.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHH
Q 048778 266 PNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLT----DKALSLFDEMVVKRCKPNAHTY 341 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~ 341 (902)
+|.......+..+...|. +++...+..+... +|...-...+.+++..|+. +++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 566666666666666653 3344444444332 3555555556666666652 3455666555333 3444555
Q ss_pred HHHHHHHHHcCCH-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 342 TVLIDRLCREGKI-----DEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 342 ~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
...+.++...+.- ..+...+...... ++..+-...+.++.+.++ .++...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555443321 1223333333322 244444455555555554 3444444444442 23333333333
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 048778 417 GLCRMN-KSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPE 495 (902)
Q Consensus 417 ~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (902)
++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 443332 12334444444443 23444444555555555553 3333333333322 1 122344455555553
Q ss_pred HHHHHHHHHHH
Q 048778 496 LANGFFGLMVK 506 (902)
Q Consensus 496 ~A~~~~~~~~~ 506 (902)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 34555555444
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.07 E-value=95 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhc
Q 048778 843 EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT 877 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (902)
.++.++|+++.++ ..|...|..|+.-.+.
T Consensus 674 l~die~AIefvKe------q~D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 674 LRDIEKAIEFVKE------QDDSELWEDLINYSLD 702 (846)
T ss_pred hhCHHHHHHHHHh------cCCHHHHHHHHHHhhc
Confidence 3555555555554 3345556666554443
No 332
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=50 Score=31.85 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-----HHHHHHHHcc--
Q 048778 742 DVEHAFRLRDRIESCGG---STT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-----TSIIGCYCKE-- 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~---~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~l~~~~~~~-- 808 (902)
+++.|+..|+.+-+... .+. ..+...+..-...|++.+|+.+|+++....+..+..- .-+-.++|+.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 67777777777665541 111 2234445555677889999999998876443222111 2222233332
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 048778 809 RKYDDCLEFMNLILESGFVPS 829 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~ 829 (902)
.+.-.+...+++-.+ ..|.
T Consensus 209 ~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHh--cCCc
Confidence 444455555555554 3564
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.83 E-value=59 Score=32.50 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=44.0
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
|..+.-+.+..++.+.+ ...+..|.+.|.+.+|.++.+..+. +.|-... ..++..+...|+--.|.
T Consensus 266 Waedererle~ly~kll----------gkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 266 WAEDERERLEQLYMKLL----------GKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred cccchHHHHHHHHHHHH----------HHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhh
Confidence 33334455555555443 3456667777777777777777766 3343222 56666777777766666
Q ss_pred HHHHHHH
Q 048778 816 EFMNLIL 822 (902)
Q Consensus 816 ~~~~~~~ 822 (902)
+-++++.
T Consensus 334 khyerya 340 (361)
T COG3947 334 KHYERYA 340 (361)
T ss_pred hHHHHHH
Confidence 6666554
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.56 E-value=1.1e+02 Score=35.44 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHh---
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG-LFPDEITYNILVDGFCR--- 455 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~--- 455 (902)
...+.-.|+++.|.+.+-. ..+...|.+.+...+..+.-.+-..... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455668889999888876 2222345555554444332222111111 2222211 01122567778888876
Q ss_pred cCCHHHHHHHHHHHHhC
Q 048778 456 EGQLDIALKIFNSMSIF 472 (902)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (902)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 46778888888777654
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.42 E-value=3.7 Score=25.64 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+|..++.+|...|++++|++.++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677788888888888888888876543
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.10 E-value=2.3 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..++.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566666666667777766666665
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.04 E-value=3.3 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
.+++.++..|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667788888888888888888888754
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.84 E-value=9.2 Score=30.86 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 216 GEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
+++-+..+...++.|++.+..+-++++-|.+++..|.++|+.++.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555543
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.61 E-value=2.2 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+...+..+.+.|+.++|.+.|+++++..|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3445556666779999999999999987753
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.01 E-value=96 Score=33.74 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
|....-+++..+..+-...-...+..+|+..| -+-..|..++.+|... ..++-..+|+++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444556666666666666666666776643 3556666677777666 45666677777766532 23333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~ 647 (902)
-|.+ ++.+.+..+|.++...
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 3333 6666677777666543
No 341
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.69 E-value=51 Score=33.13 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=38.5
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048778 158 FKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIAD-GFVLSAIDYRSVINALCKSGLVRAGEMFF 220 (902)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (902)
-.++..+-..+|..+++.+++..-++++...... +..-|...|...|+.....|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3445555566666777777777666666665544 44556666777777766666655444433
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.49 E-value=1.3e+02 Score=34.96 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=101.1
Q ss_pred HHHHHHhhhh-CCCCCC--HhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH----H-HHHHHHHHHhcCChHHH
Q 048778 146 LIVALDGLSK-DGFKLN--YPCYSCLLMSLA-KLDLGFVAYAVFVKLIADGFVLSAI----D-YRSVINALCKSGLVRAG 216 (902)
Q Consensus 146 a~~~~~~~~~-~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~g~~~~~~----~-~~~ll~~~~~~~~~~~a 216 (902)
|.+.++.+.+ ....|. ..++--+...|. ...++++|...+.+.....-+++-. . -..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4444544442 222222 234555666665 5778889988888775543222221 1 223345555555544 8
Q ss_pred HHHHHHHHhC----CCCcCHHHHHHH-HHHHhccCCHHHHHHHHHHhhhcCC--CCCCHhhHHHHHHHHH--hcCChhHH
Q 048778 217 EMFFCRVLKH----GFCLDTHICTSL-VLGHCRGNDLKEAFKVFDVMSKEAS--YRPNSVTFTTLIHGLC--EVGRLDEA 287 (902)
Q Consensus 217 ~~~~~~~~~~----g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~--~~g~~~~A 287 (902)
....++.++. +..+-.+.+.-+ +..+...++...|.+.++.+..... ..|-+..+-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8877776543 222223333333 3333344788889998888876532 2233444444555443 45667778
Q ss_pred HHHHHHHHHCCC---------CcCHhhHHHHHHHHH--hcCChHHHHHHHHHHH
Q 048778 288 FSLKDEMCEKGW---------QPSTRTYTVLIKALC--DISLTDKALSLFDEMV 330 (902)
Q Consensus 288 ~~~~~~m~~~g~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 330 (902)
.+.++++..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777643221 345566777776666 4566666665555443
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.79 E-value=1.4e+02 Score=35.03 Aligned_cols=226 Identities=11% Similarity=0.084 Sum_probs=118.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 048778 557 VLCKENKLKEEYAMFGKILKFGLVPSV-------VTYTILVD-GLFRAGNIALAMSMIEVMKLA----GCPPNVHTYTVI 624 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l 624 (902)
......++++|..++.++...-..|+. ..++.+-. .....|+++.|.++.+..... -..+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345667888888888777653222221 12333322 234568899999888877663 123445667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCCH--HHHHHHHHHHHHC--CCCC----CHHHH
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHIT---YSILV--RAHASTGRL--DHAFKIVSFMVAN--GCQL----NSNVY 691 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~--~~~~~~g~~--~~A~~~~~~m~~~--g~~~----~~~~~ 691 (902)
..+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+. ++....+...... +-.| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888888999999988877664321233333 33332 234556632 2223333322211 0111 11233
Q ss_pred HHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHH---HHHHH
Q 048778 692 SALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDF---YNFLV 768 (902)
Q Consensus 692 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~ 768 (902)
..++.++.+.. +...+|..-++-.....|..... +..|+
T Consensus 584 ~~ll~~~~r~~--------------------------------------~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 584 AQLLRAWLRLD--------------------------------------LAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HHHHHHHHHHh--------------------------------------hhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 33333332211 12333333333332222222222 23678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCch----HhH-HHHHHH--HHccCChHHHHHHHHH
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPA----KAI-TSIIGC--YCKERKYDDCLEFMNL 820 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~-~~l~~~--~~~~g~~~~A~~~~~~ 820 (902)
..+...|+.++|.....++......+. -.. ...+.+ ....|+.++|.....+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 888899999999988888865443332 111 222222 2367788877776665
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.55 E-value=8.5 Score=31.42 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 215 AGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 215 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
+.++-+..+...++.|++.+..+.++++-|.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555666666666666666666666666666666665
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.44 E-value=5.4 Score=30.78 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=31.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 807 KERKYDDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+....++|+..|++++++-..|. ..++.+++.+|+..|++++.+++--+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777775432332 25556667777777877777766544
No 346
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=76 Score=31.63 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIM----KSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
-..+|..++..|++.++.+.+.+...+.. ..|.+-|... ..|+..|....-.++-++..+.+.++|-+.+-..-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 36788999999999999999988766654 4455666555 77777888888899999999999998877654222
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHhC
Q 048778 834 CTVIQ--GLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 834 ~~l~~--~l~~~g~~~~A~~~~~~~~~~ 859 (902)
...-. -+....++.+|-.++-..+..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 11111 122345678888888776533
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.90 E-value=17 Score=29.47 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 566 EEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
++.+-++.+....+.|++....+.+.+|.+.+++..|+++|+-.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555666666666666666666666666666665553
No 348
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.76 E-value=1.3e+02 Score=34.62 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
|++.+|.+.+-.+....+.|...-...|.++
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 5566666665555555555555444444443
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.18 E-value=57 Score=35.70 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHhccCCHHHHHHHHH
Q 048778 203 VINALCKSGLVRAGEMFFCRVLKHGFCLDTH--ICTSLVLGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 203 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 256 (902)
.+...++.|+.+- .+.+.+.|..|+.. .....+...++.|+.+.+..+++
T Consensus 38 pL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 38 PIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 3444445555543 23334445444322 12234555566677766655554
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.97 E-value=19 Score=33.89 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
++|.+.|-.+...+.-.++.....|...|.+. +.++|..+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr----------------------------------------D~~Kt~~l 162 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR----------------------------------------DPEKTIQL 162 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc----------------------------------------CHHHHHHH
Confidence 66777777776655555666666666555533 67788888
Q ss_pred HHHHHhcC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 750 RDRIESCG----GSTTDFYNFLVVELCRAGRIVEAD 781 (902)
Q Consensus 750 ~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 781 (902)
+.++++.. ..|+..+.+|+..|.+.|+++.|-
T Consensus 163 l~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 163 LLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 87777765 335777888888888888877763
No 351
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.92 E-value=27 Score=33.86 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=60.8
Q ss_pred HHccCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCCHH-------HHHHHHHHHHhCCCCCc-----ch
Q 048778 805 YCKERKYDDCLEFMNLILE----SGFVPSF--ESHCTVIQGLQSEGRNK-------QAKNLVSDLFRYNGIEE-----KA 866 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~----~~~~p~~--~~~~~l~~~l~~~g~~~-------~A~~~~~~~~~~~~~~~-----~~ 866 (902)
|.....+++|++.+.-++- .+-.|.. ..+..+++.|...|+.+ +|.+.|+++.+....|. ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4455667777777766651 2323432 56677888898888854 45555555544432222 23
Q ss_pred hHHHHHHHHhcCCcHhHHHHHHHHHHhcCcccC
Q 048778 867 AVLPYIEFLLTGDELGKSIDLLNLIDQVHYRQR 899 (902)
Q Consensus 867 ~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~~~ 899 (902)
....++....+.|++++|.+.+.++...+-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344555667789999999999999988765543
No 352
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.81 E-value=28 Score=30.28 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCchHhH-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGR---IVEADRIMKDIMKSG-VFPAKAI-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.....+-..+++++.+..+ ..+.+.+++.+.+.. ..-.... .-|+-++.+.+++++++++.+.+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344445555555555442 344455555555411 1111222 4555555566666666666555554
No 353
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.81 E-value=1e+02 Score=31.91 Aligned_cols=17 Identities=6% Similarity=0.174 Sum_probs=12.6
Q ss_pred ccCCHHHHHHHHHHhhh
Q 048778 244 RGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 244 ~~g~~~~A~~~~~~m~~ 260 (902)
-..+++.|+.+|+...-
T Consensus 195 glk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 195 GLKRFERALYLLEICVT 211 (422)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 34678888888887774
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.45 E-value=4.2 Score=23.72 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 048778 834 CTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~ 854 (902)
..++..+...|+.++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555443
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.27 E-value=41 Score=37.16 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=48.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 048778 419 CRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELAN 498 (902)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 498 (902)
.+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3455555555554443 3344555666666666666666666554443 234444445555554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 499 GFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFER 538 (902)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (902)
.+-....+.|.. |....+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444444321 1222334445566555555543
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=1.9e+02 Score=34.59 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 481 FTSIIDGLCKLGKPELANGFFGLMVK 506 (902)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~~~~ 506 (902)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56667777777777777777766655
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=1.7e+02 Score=33.88 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048778 339 HTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389 (902)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 389 (902)
......|..+.-.|++++|-...-.|... +..-|-.-+..+...++.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 34455555556666666666665555543 444555555555444443
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.95 E-value=4.6 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666666666666666554
No 359
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.72 E-value=5.6 Score=42.36 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIG 803 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~ 803 (902)
++..|..-+.++++.+|.....|.--+.++...+.+.+|...|+.... +.|+... ...+.
T Consensus 53 ~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 53 SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 666666666666666665566666566666666666666666666665 5566555 44433
No 360
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.45 E-value=1.1e+02 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
+.++|...|+++.+.+. ......+. .+...|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 77777777777776654 44445455 444444
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.24 E-value=1.4e+02 Score=32.60 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 407 NIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIID 486 (902)
Q Consensus 407 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (902)
|.....+++..+..+....-...+..+|+.-| .+-..|..++..|..+ ..+.-..+|+++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444445555544444444444555554432 2334444444444444 33444444554444321 12222222333
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 048778 487 GLCKLGKPELANGFFGLMVK 506 (902)
Q Consensus 487 ~~~~~g~~~~A~~~~~~~~~ 506 (902)
.|-+ ++.+.+..+|.....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 2322 444444444444443
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.03 E-value=16 Score=34.54 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=44.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
+..+.+.+.+.+|+...+.-++..|.|...-..|...||-.|+|++|..-++..-. +.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccc
Confidence 34456677778888888777777777777777777888888888888877777665 445443
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.26 E-value=32 Score=32.45 Aligned_cols=73 Identities=15% Similarity=0.036 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILES---GFVPSFESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~l~~~g~~~~A~ 850 (902)
-++|.+.|-++...+.-.+... ..|+.-|. ..+.++|+.++.++++. +-.++++.+..|+..+.+.|++++|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4677777777766554444444 45554444 56778888887777742 22456677777888888888877764
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.06 E-value=6 Score=23.58 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456677777777777777777777765
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.33 E-value=20 Score=29.36 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+-++.+....+.|++....+.+.+|.+.+++.-|.++++-...
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333444444444444444444555555555555554444443
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.61 E-value=1.1e+02 Score=33.38 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=5.1
Q ss_pred HHHHHCCCCCC
Q 048778 502 GLMVKKGISPD 512 (902)
Q Consensus 502 ~~~~~~~~~~~ 512 (902)
+.+.+.|..++
T Consensus 219 ~~Ll~~gad~n 229 (413)
T PHA02875 219 RLFIKRGADCN 229 (413)
T ss_pred HHHHHCCcCcc
Confidence 34444554444
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.54 E-value=45 Score=27.29 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=5.0
Q ss_pred HcCCHHHHHHHH
Q 048778 595 RAGNIALAMSMI 606 (902)
Q Consensus 595 ~~g~~~~A~~~~ 606 (902)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T TIGR02508 51 NRGDYQSALQLG 62 (115)
T ss_pred ccchHHHHHHhc
Confidence 344444444433
No 368
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.47 E-value=1.5e+02 Score=31.72 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=45.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
..|+.-|...|++.||.+.++++ | -| ....+..++.++.+.|+...-+.+++...+.+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---g-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---G-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---C-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 67888899999999999888876 3 23 2356677888888888888888888887666654
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=71.23 E-value=9.5 Score=40.70 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=74.6
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
+.+.+...++.|..++.++++++|.....|..-+.++.+.+++..|+.-+.++++ ..|...- ..-+.++...+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHH
Confidence 3344556999999999999999998888888888899999999999999999988 4465544 55566777888899
Q ss_pred HHHHHHHHHHHcCCCCCHH
Q 048778 813 DCLEFMNLILESGFVPSFE 831 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~ 831 (902)
+|+..++.... +.|+-.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHhhh--cCcCcH
Confidence 99999888876 366543
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.21 E-value=1.2e+02 Score=30.37 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH----HcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLIL----ESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..++..+.+.|.+.+|+.++..+. +..-.|+. ..+..-..+|.+-.+..++..-+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHH
Confidence 567888999999999999887665 22223443 3333333455555555555554444
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.12 E-value=4.9 Score=40.74 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHH
Q 048778 771 LCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNK 847 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~ 847 (902)
....|.+++|++.|-..+. +.|.... ..-..++.+.++...|++=...+.+. .||. ..|-+-..+-...|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchH
Confidence 3457889999999999988 4455544 66677889999999999988888774 6765 55666666667789999
Q ss_pred HHHHHHHHHHhCCCCCcchhH
Q 048778 848 QAKNLVSDLFRYNGIEEKAAV 868 (902)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~ 868 (902)
+|...+..+.+.++.+....|
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHHhccccHHHHHH
Confidence 999999999999988877766
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.08 E-value=12 Score=40.74 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-HHHHHHHHccCChHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+-|..++..|..-..|-...++.-+-.+...|+...|...+..+.. ..|... . ..|+..+.+.|....|-.++.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 3344444444332233333333333334556777777777776665 333332 2 6666677777777777777776
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 821 ILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 821 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+... ...+-++..++.++....+.+.|++.++++++..
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 66543 3334455566666666777777777777766554
No 373
>PRK10941 hypothetical protein; Provisional
Probab=70.99 E-value=51 Score=33.27 Aligned_cols=50 Identities=8% Similarity=-0.112 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+++.|.+..+.++...|.++.-+.--+..|.+.|.+..|..-++..++..
T Consensus 196 ~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 196 QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888887744
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.90 E-value=46 Score=29.03 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=51.1
Q ss_pred CchHhH-HHHHHHHHccC---ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 793 FPAKAI-TSIIGCYCKER---KYDDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 793 ~p~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.+...+ ..++|++.+.. +..+.+.+++.+.+.. .|+ .+....++-++.+.|++++++.+++.+++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 445555 88999998766 5677788999888622 443 36666777888999999999999999876653
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=68.89 E-value=8.6 Score=22.81 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.|..++.++...|++++|...+++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666666777777777777666543
No 376
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.53 E-value=92 Score=31.90 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=88.1
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHh-----cCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHc
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV-VELCR-----AGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCK 807 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~ 807 (902)
...|..+-++++..++++....+.+-+......+ .++.. .-+|..-..+|+.+.. +.|+++. .+-.-+...
T Consensus 264 r~lW~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~ 341 (415)
T COG4941 264 RSLWDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAM 341 (415)
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHH
Confidence 3467777899999999999988844444333333 33332 2378888899999988 5566666 334444455
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhH
Q 048778 808 ERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAV 868 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 868 (902)
..-.+.++.+.+.+.+.+--.+. ..+..-+..+.+.|+.+||..-|++++.....+....|
T Consensus 342 ~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 342 REGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred hhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 55567888888888754211111 23345567788999999999999999877655544433
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.16 E-value=11 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
++.+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555555544
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.13 E-value=16 Score=28.26 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=34.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
...+.++|+..+.+++++-..+..-. ..++.+|+..|++.+++++.-.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888887654444332 66777888888888887765543
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.10 E-value=15 Score=40.09 Aligned_cols=88 Identities=13% Similarity=-0.050 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHH
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVE 744 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (902)
..|+...|...+..+.........+....|...+.+.| -..
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~---------------------------------------~~~ 659 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYG---------------------------------------LHL 659 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhh---------------------------------------hhc
Confidence 45788888877777664211112233444555555655 677
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+|..++.+.+......+.++..++++|....+.+.|++.|+++.+..
T Consensus 660 da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 660 DATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 78888888887776667778888888888888888888888888743
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.46 E-value=15 Score=24.94 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 766 FLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
.|+.+|...|+.+.|.+++++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4566666777777777777666653
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.07 E-value=1.8e+02 Score=30.99 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHh---cCCcCCccccccccCCCCCCCCCcC
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYS-ALLAGLVS---SNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
+-...++-.+...+.+.|+.+.|.+++++.+= ++. ++...+.. .. ..|..++++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~--------------~~g~~rL~~ 94 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNL--------------TSGNCRLDY 94 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhccc--------------ccCccccCC
Confidence 55677777778888888888888888887752 111 11111100 00 011112222
Q ss_pred ----Ccchh---hhhhhhhhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcC-----
Q 048778 726 ----DDDDY---ERSSKNFLREMDVEHAFRLRDRIESCGGS-TTDFYNFLVVELC-RAGRIVEADRIMKDIMKSG----- 791 (902)
Q Consensus 726 ----~~~~~---~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~----- 791 (902)
....| .+.+..+.+.|.+..|.+..+-+..++|. |+......++.|+ +.++++--+++++......
T Consensus 95 ~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~ 174 (360)
T PF04910_consen 95 RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL 174 (360)
T ss_pred ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh
Confidence 11222 24455677788999999999999999977 8888888888775 5567877788877765411
Q ss_pred -CCchHhHHHHHHHHHccCCh---------------HHHHHHHHHHHH
Q 048778 792 -VFPAKAITSIIGCYCKERKY---------------DDCLEFMNLILE 823 (902)
Q Consensus 792 -~~p~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~ 823 (902)
.-|+-. .+++-++...++. ++|...+.++..
T Consensus 175 ~~lPn~a-~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 175 SLLPNFA-FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred hhCccHH-HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 123333 4444455555555 778877776654
No 382
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.69 E-value=4.3e+02 Score=35.26 Aligned_cols=152 Identities=14% Similarity=0.055 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 518 ALADGHCKNGKTGEALMIFERMVQNTD--LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR 595 (902)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (902)
++..+-.+.+.+..|...++.-..... ......|..+...|...+++|....+...-.. .|+ .++ -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 344455677788888888887311111 11223344455588888888888777664111 122 222 3444667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL-VRAHASTGRLDHAFK 674 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~ 674 (902)
.|+++.|...|+.+.+.+ ++...+++.++......|.++..+...+...... ++....++.+ +.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998874 4447778888887777888888777666655432 3333333332 333456677776665
Q ss_pred HHH
Q 048778 675 IVS 677 (902)
Q Consensus 675 ~~~ 677 (902)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 383
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.57 E-value=2.4 Score=38.20 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=26.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHH
Q 048778 275 IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFD 327 (902)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 327 (902)
|+.+.+.+.++.+..+++.+...+..-+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555554444445555555555555555455444444
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.24 E-value=11 Score=26.71 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+..++-++.+.|++++|.+..+.+++ +.|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 34556666677777777777777666 44544
No 385
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.01 E-value=50 Score=38.28 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=87.5
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+|+++.|.+.-.++ ++..+|..|+..-..+|+.+-|+..|++... . ..|...|.-.|+.++-.++.+
T Consensus 656 ~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--f------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 656 CGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--F------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred cCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--h------hheeEEEEEeCCHHHHHHHHH
Confidence 44888887665544 5778899999999999999999999888754 1 346667888888888887777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCccc
Q 048778 820 LILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYRQ 898 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~~ 898 (902)
.+..+ .|..+.. ..-.-.|+.++-.++++. .|.-| ..|.. -...|.-++|.++.++..+.+...
T Consensus 723 iae~r---~D~~~~~---qnalYl~dv~ervkIl~n---~g~~~--laylt----a~~~G~~~~ae~l~ee~~~~~~~l 786 (1202)
T KOG0292|consen 723 IAEIR---NDATGQF---QNALYLGDVKERVKILEN---GGQLP--LAYLT----AAAHGLEDQAEKLGEELEKQVPSL 786 (1202)
T ss_pred HHHhh---hhhHHHH---HHHHHhccHHHHHHHHHh---cCccc--HHHHH----HhhcCcHHHHHHHHHhhccccCCC
Confidence 66532 2322111 111246888888888877 34332 22311 234688888888888887755443
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.92 E-value=2.8e+02 Score=32.79 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=123.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048778 593 LFRAGNIALAMSMIEVMKLAGCPPNV-------HTYTVIIN-GLCQRGRFKEAEMLLFKMFDL----GVSPNHITYSILV 660 (902)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~ 660 (902)
.....++++|..+..++...-..|+. ..|+.+-. .....|++++|+++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45567899999888877653212221 13444322 234578899999988887743 2234467778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSN---VYSALLA--GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
.+..-.|++++|..+.+...+..-.-+.. .|..+.. .+..+|+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-------------------------------- 552 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-------------------------------- 552 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH--------------------------------
Confidence 88888999999999888776532222222 2222221 2333330
Q ss_pred hhhhhccHHHHHHHHHHHHhcC----CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCchHhH---HHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCG----GSTT---DFYNFLVVELCRAGRIVEADRIMKDI----MKSGVFPAKAI---TSI 801 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~---~~l 801 (902)
. ...+....|....... |-.. ..+..+.+++.+ ++.+..-..+. ......|-... ..|
T Consensus 553 ~-----~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 553 V-----ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred H-----HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 0 2222233333322221 3322 233444444443 44444433333 33233333333 378
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHH--HhcCCHHHHHHHHHH
Q 048778 802 IGCYCKERKYDDCLEFMNLILESGFVP----SFESHCTVIQGL--QSEGRNKQAKNLVSD 855 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~l--~~~g~~~~A~~~~~~ 855 (902)
+.++...|+.++|...+.++..-...+ +-.+-...+.+. ...|+.++|.....+
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 888999999999999999887422222 222222333322 357888888887776
No 387
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.32 E-value=2.2e+02 Score=31.10 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 650 SPNHITY-SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 650 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
.|+..++ +.+++.+.+.|-.++|...+..+... .+|+...+..++..-..+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~-------------------------- 508 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQE-------------------------- 508 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHh--------------------------
Confidence 4555544 56677777888888888888888763 2445556655554322111
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.-+..-+.+.|+.+......|+..|......=..+|..+.+-.++.++.+
T Consensus 509 -----------sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 509 -----------SCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred -----------hcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 00466677777777776667777777766666677777777777776654
No 388
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.52 E-value=2.3e+02 Score=30.99 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=66.8
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ--SEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
..|+..+ +.+.+-+.+.|-+++|...+.++.... .|+...|..++..=. ..-+..-+..+|+.|+..-- .+...
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHH
Confidence 4466666 788888888888899999888887742 446666666654221 12236777788888765422 56667
Q ss_pred HHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 868 VLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 868 ~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
|..+...=...|..+.|-.++.+..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 7777766667888877777766554
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=63.13 E-value=2.8e+02 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhcc-CChhhHHHHHHHHHhhh
Q 048778 107 NSRIHLLNLVVSCNLYGVAHKAIIELIKECS-DSKDDILKLIVALDGLS 154 (902)
Q Consensus 107 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~ 154 (902)
..|...+..++-.|.+++|..++...-.... .....+..+..+++.|+
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s~~~~~~~~~~~~~~~~LL~~~P 197 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHSSYQSYSLQSAFEALIQLLSSMP 197 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTTTTTTHHHHHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhCC
Confidence 4677788888889999998887732110000 01112445566666666
No 390
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.90 E-value=1.6e+02 Score=29.03 Aligned_cols=120 Identities=14% Similarity=0.080 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGV----SPN-------HITYSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNS 688 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~ 688 (902)
-+-|...|...|.+....++++++....- ..| ...|..-|..|....+-..-..++++.+.. ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34566666667777777777777653210 111 456777777787777777777777776542 234444
Q ss_pred HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc----C-CCCH--
Q 048778 689 NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC----G-GSTT-- 761 (902)
Q Consensus 689 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~-- 761 (902)
.+.. .-..+| ++...+.|.+++|..-|-++.+. + |...
T Consensus 228 lImG----vIRECG-------------------------------GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 228 LIMG----VIRECG-------------------------------GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred HHHh----HHHHcC-------------------------------CccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 3332 223344 23445556888877655554443 2 2222
Q ss_pred HHHHHHHHHHHhcC
Q 048778 762 DFYNFLVVELCRAG 775 (902)
Q Consensus 762 ~~~~~l~~~~~~~g 775 (902)
.-|..|++.+.+.|
T Consensus 273 LKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 273 LKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHHcC
Confidence 23566677777766
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.72 E-value=56 Score=26.75 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048778 213 VRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKD 292 (902)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (902)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-.+-. .+.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555444443311 22222233445667777777777766653 477777766543 45666666666666
Q ss_pred HHHHCC
Q 048778 293 EMCEKG 298 (902)
Q Consensus 293 ~m~~~g 298 (902)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666554
No 392
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.89 E-value=1.9e+02 Score=29.35 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHHHHHH-HhCCCchhHHHHHHHHHHhc-cCChhhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCC
Q 048778 100 STYCYDVNSRIHLLNLV-VSCNLYGVAHKAIIELIKEC-SDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDL 177 (902)
Q Consensus 100 ~~~~~~~~~~~~l~~~l-~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 177 (902)
.+|.++...--+++.++ ..+|.++. .++..+++.. ...+-.+..|.++|..... ....+.+++++-+-++
T Consensus 140 k~F~e~Er~KLA~~Tal~l~nGt~~~--tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~------Ek~i~~lis~Lrkg~m 211 (412)
T KOG2297|consen 140 KLFEENERKKLAMLTALLLSNGTLPA--TVLQSLLNDNLVKEGIALSFAVKLFKEWLV------EKDINDLISSLRKGKM 211 (412)
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHhhHHHHhHHHHHHHHHHHHHHh------hccHHHHHHHHHhcCh
Confidence 35677766655666543 34555443 3444433221 1111113346677766542 2245777888777665
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHH-H
Q 048778 178 GFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVF-D 256 (902)
Q Consensus 178 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~ 256 (902)
-+.-+++| +|+-.+-.....-+...|--+...-.-.++.. | .--..-..|..-..+...+++..... +
T Consensus 212 d~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKe 280 (412)
T KOG2297|consen 212 DDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKE 280 (412)
T ss_pred HhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 55555444 56655555544444444322111111111100 0 00111222333333444555555444 3
Q ss_pred HhhhcCCCCCCHh----hHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHH
Q 048778 257 VMSKEASYRPNSV----TFTTLIHGLCEVGRLD-EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKAL 323 (902)
Q Consensus 257 ~m~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 323 (902)
+|.. ..-|+.. .|+.++++---+.+-+ -|.+.++ ..-+|.-|+.++|..|+.+-.+
T Consensus 281 e~k~--~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 281 EMKR--NNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHh--cCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCChHHHHH
Confidence 4544 3345544 4666666543332111 1222222 2446888999999999887654
No 393
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.36 E-value=2.8 Score=37.74 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=25.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048778 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLA 397 (902)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (902)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433445555555555555554444444444
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.69 E-value=20 Score=21.69 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVE 770 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 770 (902)
+.+.|..+|++++...|.+...|...+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 77889999999998888888888877643
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.76 E-value=1e+02 Score=30.75 Aligned_cols=87 Identities=7% Similarity=-0.022 Sum_probs=49.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 048778 485 IDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCK---- 560 (902)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 560 (902)
|.+++..+++.+++...-+--+..-+..+.....-|-.|.|.+....+.++-...++.....+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666777666655443333222223445555566677777777777777776665333344446665555443
Q ss_pred -cCChhHHHHHH
Q 048778 561 -ENKLKEEYAMF 571 (902)
Q Consensus 561 -~g~~~~A~~~~ 571 (902)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 396
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.62 E-value=77 Score=35.41 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=63.5
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTT------DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
..++..++..+.+.|..-+..-|.|. .....|..+|....+.+.|.+.++++.+ .+|.... .-+..+...
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHH
Confidence 34445588899998887765544443 3355777788888999999999999988 5565555 666777888
Q ss_pred cCChHHHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLIL 822 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~ 822 (902)
.|.-++|+..+....
T Consensus 441 E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIK 455 (872)
T ss_pred hcchHHHHHHHHHHH
Confidence 899999998887665
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.45 E-value=2.1e+02 Score=28.88 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA-----NGCQLNSNV 690 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 690 (902)
+++...+.|..+|.+.+|..+.+..+... +.+...+-.++..+...|+--.|.+-++++.+ -|+..+..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 45566678889999999999999988775 67788888899999999998888777777653 256555443
No 398
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.07 E-value=2.4e+02 Score=29.42 Aligned_cols=82 Identities=15% Similarity=0.005 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHH
Q 048778 248 LKEAFKVFDVMSKEASY---RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALS 324 (902)
Q Consensus 248 ~~~A~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 324 (902)
.+.|.+.|+.......- ..+......+.....+.|..+.-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 34566666666552111 223334444444555555544433343333332 345556666666666666666666
Q ss_pred HHHHHHHC
Q 048778 325 LFDEMVVK 332 (902)
Q Consensus 325 ~~~~m~~~ 332 (902)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.90 E-value=29 Score=25.66 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
...++.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334445555555555555555543
No 400
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.53 E-value=1.3e+02 Score=30.18 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCK---- 385 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 385 (902)
|.+++..+++.+++...-+..+.--+-...+...-|-.|.|.|....+.++-...+..--..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544333332211112334444555677777777777777777664333344446666555543
Q ss_pred -cCChHHHHHHH
Q 048778 386 -QGRIIAAFELL 396 (902)
Q Consensus 386 -~g~~~~A~~~~ 396 (902)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777766
No 401
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.00 E-value=2.8e+02 Score=29.81 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=52.7
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIG 803 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~ 803 (902)
....+....+-+-|...|++.+|.+.++++---.-.+...+.+++.+..+.|+-..-+.+++...+.|+... +.+-.
T Consensus 506 ed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~---nQMtk 582 (645)
T KOG0403|consen 506 EDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITT---NQMTK 582 (645)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeH---HHhhh
Confidence 333455555666677788889998888776432345677888888888888887777777777766553221 44554
Q ss_pred HH
Q 048778 804 CY 805 (902)
Q Consensus 804 ~~ 805 (902)
+|
T Consensus 583 Gf 584 (645)
T KOG0403|consen 583 GF 584 (645)
T ss_pred hh
Confidence 44
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.76 E-value=2.7e+02 Score=29.65 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=74.5
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCC-----C------------chH-hH----HHHHHH
Q 048778 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-------KSGV-----F------------PAK-AI----TSIIGC 804 (902)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-----~------------p~~-~~----~~l~~~ 804 (902)
++..|-+..++..+...+...|+.+.|.++.++++ .... . +.+ .. ...+..
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 35568899999999999999999999888888774 1112 1 111 11 444566
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHh
Q 048778 805 YCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGL-QSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l-~~~g~~~~A~~~~~~~~~ 858 (902)
+.+.|-+..|.++.+-+..-...-|+-.....++.| .+.++++--+++++....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 789999999999999998854333554444555544 478888888888888644
No 403
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=82 Score=30.68 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.++..|+...|++-++++.-...+.. .| +..+|..-+.+....=+.++|.+=+.+.++..+.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44555555666666666666666553 33 3355555555555555556666666666555433
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.34 E-value=56 Score=26.67 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=28.3
Q ss_pred hhhccHHHHHHHHHHHHhc----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESC----GGST-----TDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++.|++.+|.+.+.+.... .... ..+...++......|++++|+..++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445777776555554433 2111 23334455566666677777666666654
No 405
>PRK10941 hypothetical protein; Provisional
Probab=55.06 E-value=1e+02 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 766 FLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.|-.+|.+.++++.|+.+.+.++. +.|+... .--+-.|.+.|.+..|..=++..++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455556666666666666655 4455544 3344455555666666555555553
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.81 E-value=25 Score=33.66 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=50.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
+.++.+.|.+++.++++.-|.....|..++..-.+.|+++.|...|++.++ +.|++.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPEDH 63 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcccc
Confidence 445999999999999999999999999999999999999999999999988 555543
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.78 E-value=28 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
...++-++.+.|++++|..+.+.+++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 44566778889999999999988877754
No 408
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.84 E-value=2.8e+02 Score=28.97 Aligned_cols=122 Identities=9% Similarity=0.131 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc------CC------Cc--hHhH----HH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA---GRIVEADRIMKDIMKS------GV------FP--AKAI----TS 800 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~------~~------~p--~~~~----~~ 800 (902)
+.++..+.+++++..+|.+...|...+...... -.+++...+|.+.+.. +. .+ +... ..
T Consensus 80 ~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r 159 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR 159 (321)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 666666667777766666777776666544331 1344555555444321 10 00 1111 23
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCcchhHHHHHH
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGF-VPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN----GIEEKAAVLPYIE 873 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 873 (902)
+...+.+.|-.+.|..+++.+.+.++ .|+... .....+.++.|+..-+.+ -.|+...|.....
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~----------~~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~ 227 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNFFRPESLS----------SSSFSERLESFEEFWESEVPRIGEPGAKGWRKWME 227 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHcCCccccc----------cccHHHHHHHHHHHhCcCCCCCCCCCcchhhhhhc
Confidence 33445688999999999998887654 444221 111125555555544442 2455666655443
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.22 E-value=4.8e+02 Score=32.02 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
.+..+|...|...+|+..|.+...
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhh
Confidence 344557888999999999988876
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.90 E-value=37 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=16.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
-.++.+|...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667777777777777777776653
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.42 E-value=2.2e+02 Score=28.14 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048778 771 LCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~ 789 (902)
|...|+.++|.++.+++.+
T Consensus 179 yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 3445566666665555543
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=52.09 E-value=95 Score=26.71 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048778 568 YAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA 612 (902)
Q Consensus 568 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (902)
.+-++.+....+.|+......-++++.+.+++..|+++|+-.+.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444555566777777777777777777777777777766653
No 413
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.81 E-value=3e+02 Score=28.67 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 354 IDEANGMCGKMLQDGH----FPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429 (902)
Q Consensus 354 ~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 429 (902)
.++|.+.|+.....+. ..+......++....+.|..++-..+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4455566666555311 223333344444445555544433344433332 355555666666666666666666
Q ss_pred HHHHHHhCC
Q 048778 430 LLKRVVDGG 438 (902)
Q Consensus 430 ~~~~~~~~g 438 (902)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 666666643
No 414
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.55 E-value=60 Score=33.13 Aligned_cols=87 Identities=10% Similarity=0.091 Sum_probs=64.3
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG--GS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
+..+++..++..|...|.+.++.. .+ +.+.|+.-+.+-...|++..|+.-...++. ++|...- ..=+.|+..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHH
Confidence 345566669999999999988876 22 456788888888888999999999888887 6777655 555666677
Q ss_pred cCChHHHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLIL 822 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~ 822 (902)
..++.+|....+...
T Consensus 166 Le~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777666666665543
No 415
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.52 E-value=2.5e+02 Score=27.36 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER 809 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g 809 (902)
.|++.....++. +|..+++++|.+++.++++.|..|.+....+.+.+....
T Consensus 236 ~PhP~~v~~ml~-~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 236 EPHPLLVKKMLQ-ACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMD 286 (333)
T ss_pred CCChHHHHHHHH-HHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 455655555553 456678999999999999999999888766666665443
No 416
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.24 E-value=4.6e+02 Score=30.34 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CcCCcccc
Q 048778 636 EAEMLLFKMFDLGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN--KASGVLSI 710 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~~~~~ 710 (902)
+-...+.+|...--.|+ ..+...++-.|....+++..+++.+.+.+ -||..-+ ...+ .+.-+-.+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~v-------ve~~nv~f~YaFAL 250 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKV-------VETHNVRFHYAFAL 250 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---Ccchhhh-------hccCceEEEeeehh
Confidence 34456677764422444 44555666677777888888888888875 3332111 1111 01111122
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHH---------HHhcCCHHHH
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVE---------LCRAGRIVEA 780 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~---------~~~~g~~~~A 780 (902)
..++ +-|+-+.|+...-.+.++. +..+..|...++. |...+..+-|
T Consensus 251 NRRN------------------------r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a 306 (1226)
T KOG4279|consen 251 NRRN------------------------RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHA 306 (1226)
T ss_pred cccC------------------------CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHH
Confidence 2222 2348888888888888776 4444444433333 4445667888
Q ss_pred HHHHHHHHHcCCCchHhH-HHHHHHHHccCC-hHHHHHHHH------HHH-HcCCCCCHHHHHHHH---HHHHhcCCHHH
Q 048778 781 DRIMKDIMKSGVFPAKAI-TSIIGCYCKERK-YDDCLEFMN------LIL-ESGFVPSFESHCTVI---QGLQSEGRNKQ 848 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~-~~~A~~~~~------~~~-~~~~~p~~~~~~~l~---~~l~~~g~~~~ 848 (902)
.+.|+++.+ ..|.... .+++-.+...|. ++...++-. .++ ++|.--....|..++ .+-.-.+++.+
T Consensus 307 ~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~k 384 (1226)
T KOG4279|consen 307 IEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQK 384 (1226)
T ss_pred HHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHH
Confidence 999999988 7787766 555555554442 333222221 222 222211222222222 12234567777
Q ss_pred HHHHHHHHHhCC
Q 048778 849 AKNLVSDLFRYN 860 (902)
Q Consensus 849 A~~~~~~~~~~~ 860 (902)
|+..-+.|.+..
T Consensus 385 aiqAae~mfKLk 396 (1226)
T KOG4279|consen 385 AIQAAEMMFKLK 396 (1226)
T ss_pred HHHHHHHHhccC
Confidence 777777764443
No 417
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=49.73 E-value=1.8e+02 Score=25.40 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 048778 85 NTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELI 133 (902)
Q Consensus 85 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~ 133 (902)
||..|..++......+. +...++.|.......++..+...+.
T Consensus 4 Np~IA~~~l~~l~~s~~-------~~~yld~lv~~~~sl~s~EvVn~L~ 45 (126)
T PF10155_consen 4 NPNIAIEILVKLINSPN-------FKEYLDVLVSMDMSLHSMEVVNRLT 45 (126)
T ss_pred cHHHHHHHHHHHcCCch-------HHHHHHHHHcCCCchhHHHHHHHHH
Confidence 36667666665543221 3444555555554444444444443
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.61 E-value=85 Score=25.57 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 835 TVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.++......|++++|...++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555667777777777666544
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.24 E-value=5.1e+02 Score=30.28 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=65.8
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048778 383 YCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIA 462 (902)
Q Consensus 383 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 462 (902)
..+.|++..+.++...+....+ .....|..+...+. ....++....+++-. +.+.....-...+..+.+.+++...
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 3466777777777776643322 22333333332221 223443333333321 1111122222334445566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 463 LKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTG 530 (902)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (902)
.+.+.. .+.+...-.....+....|+.++|......+=..|.. .+.....+++.+.+.|...
T Consensus 119 ~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 119 LAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 552211 1334444455666677777777666666655444422 4455566666666555443
No 420
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.04 E-value=2.9e+02 Score=27.39 Aligned_cols=224 Identities=9% Similarity=0.052 Sum_probs=110.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHH
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLA---GC--PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVSPN---HITY 656 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~ 656 (902)
..++..+.+.|++++.+..|.+|+.. .+ .-+..+.|.++.-.....+.+--..+++.-++. ..+.+ ..|-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 33455556666666666666655431 00 112334455555444444444444443332210 00111 1233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCH-------HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGC----QLNS-------NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
..|...|...|.+.+-.++++++.+.-. ..|. .+|..-+..|..+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK----------------------- 205 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK----------------------- 205 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc-----------------------
Confidence 4577777777888887777777764210 1111 23333344444433
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcC---CCchH
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFYNFL----VVELCRAGRIVEADRIMKDIMKSG---VFPAK 796 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~ 796 (902)
+...-..+|++.+... -|++...... +....+.|.+++|..-|-++.+.- -.|..
T Consensus 206 ----------------nNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR 269 (440)
T KOG1464|consen 206 ----------------NNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR 269 (440)
T ss_pred ----------------ccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch
Confidence 6666777777776554 5555544433 234567788998886665554321 13433
Q ss_pred hH----HHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 797 AI----TSIIGCYCKERKYDDCLEFMNLILESGF--VPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 797 ~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
.+ ..|++.+.+.|-- -|+.-..+.+ +|.+.+...++.+| ..++..+-..+++.
T Consensus 270 ttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKS 328 (440)
T ss_pred hHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHh
Confidence 33 3444555544410 0111011111 34445556677777 55666666666554
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.66 E-value=34 Score=34.20 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=49.6
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
.+.|+.++|.++|+.++++.|.++..+.-++......+++-+|-.+|-+++. +.|.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~n 183 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGN 183 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCc
Confidence 3456999999999999999999999999999999999999999999988876 55543
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.64 E-value=25 Score=30.55 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=12.6
Q ss_pred HHHHHHhhhhCCCCCCHhhHHHHHH
Q 048778 146 LIVALDGLSKDGFKLNYPCYSCLLM 170 (902)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~li~ 170 (902)
|..+|..|.+.|.+|| .|+.|+.
T Consensus 114 aY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred HHHHHHHHHhCCCCCc--cHHHHHH
Confidence 5555555555555554 4555543
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.07 E-value=2e+02 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.+.+.++|+.|..+|+--. ...|...+..+...|++++|.++++..
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3477788888876655443 466677777777888888888887753
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.02 E-value=3.4e+02 Score=27.93 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 516 ITALADGHCKNGKTGEALMIFERM 539 (902)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~ 539 (902)
+.....-||+.|+.+.|++.+.+.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444555555555555555443
No 425
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.50 E-value=1.4e+02 Score=28.90 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---h--HhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFP---A--KAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFE 831 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 831 (902)
.....-++.|+--|.-+..+.+|.+.|.+-. |+.| + ... ..-+......|++++|++...++...-++-|.+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3344456677777777777777777776543 3554 1 122 556677789999999999998875322333433
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHHH
Q 048778 832 SHCTVIQ----GLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 832 ~~~~l~~----~l~~~g~~~~A~~~~~~~ 856 (902)
.+.++-. -+.++|+.++|+++.+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333322 345889999999988873
No 426
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.38 E-value=1e+02 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 816 EFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 816 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+.++++..++...-+....+|+-.|...|+.+.|.+-|+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3444444333232333445555566666666666666655
No 427
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.70 E-value=3.4e+02 Score=28.10 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHhH---HHHHHHHHccCChHHHHHHHHHHHH-----cCCCCCH-HH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSG---VFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE-----SGFVPSF-ES 832 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~-~~ 832 (902)
..+.....+.++.++|++.++++.+.- -.|+.+. ..++.++...|+..++.+.+....+ .++.|+. ..
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 344445666778999999999987542 3455555 7778889999999999999988876 5666655 55
Q ss_pred HHHHHHHHHh-cCCHH
Q 048778 833 HCTVIQGLQS-EGRNK 847 (902)
Q Consensus 833 ~~~l~~~l~~-~g~~~ 847 (902)
|..+..-|.+ -|++.
T Consensus 159 fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 6666655543 35543
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.95 E-value=3.5e+02 Score=27.50 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=48.9
Q ss_pred CHhhHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048778 161 NYPCYSCLLMSLA--KLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 161 ~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (902)
.+..++-+|+-|- ..+--++..+++.-+ .|+.++...--+++.++. ...|. |...+++.|
T Consensus 110 ~~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal~---------------l~nGt-~~~tvl~~L 171 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTALL---------------LSNGT-LPATVLQSL 171 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHH---------------HhCCC-CCHHHHHHH
Confidence 4556666766543 222222222222222 145566655444444432 22343 334444444
Q ss_pred H-HHHhccC-CHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 239 V-LGHCRGN-DLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 239 i-~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
. .-+.+.| -..=|.++|...... ...+.++..+.+.+.-+.-+++
T Consensus 172 ~~d~LVkeGi~l~F~~~lFk~~~~E-------k~i~~lis~Lrkg~md~rLmef 218 (412)
T KOG2297|consen 172 LNDNLVKEGIALSFAVKLFKEWLVE-------KDINDLISSLRKGKMDDRLMEF 218 (412)
T ss_pred HHhhHHHHhHHHHHHHHHHHHHHhh-------ccHHHHHHHHHhcChHhHHHHh
Confidence 4 3344555 234466777766542 2345566666555544444444
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.74 E-value=5e+02 Score=29.16 Aligned_cols=136 Identities=18% Similarity=0.112 Sum_probs=0.0
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc---------------------CCCCHHHHHHH---HHHHHhcCCHHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESC---------------------GGSTTDFYNFL---VVELCRAGRIVE 779 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~~~~~~l---~~~~~~~g~~~~ 779 (902)
++..+++-..+..+-.+|+.+.|..++++.+=. .|.|-..|.+| +..+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHHHHHHHHcCCCchHhH-HHHHHHHH-ccCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCC---HHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI-TSIIGCYC-KERKYDDCLEFMNLIL---ESGFVPSFESHCTVIQGLQSEGR---NKQAKN 851 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~-~~l~~~~~-~~g~~~~A~~~~~~~~---~~~~~p~~~~~~~l~~~l~~~g~---~~~A~~ 851 (902)
|.+..+-++...+..|+.. ..+++.|. +..+|.--+++++... +...-|+...-..++..|..... .+.|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Q ss_pred HHHHHHhC
Q 048778 852 LVSDLFRY 859 (902)
Q Consensus 852 ~~~~~~~~ 859 (902)
.+.+++++
T Consensus 441 ~l~qAl~~ 448 (665)
T KOG2422|consen 441 ALLQALKH 448 (665)
T ss_pred HHHHHHHh
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.60 E-value=1.9e+02 Score=24.24 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 048778 208 CKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEA 287 (902)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 287 (902)
......++|..+.+.+...+ .-...+.-+-+..+.+.|++++| +..-.. ...||...|-++-. .+.|--+++
T Consensus 17 tG~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~--~~~pdL~p~~AL~a--~klGL~~~~ 88 (116)
T PF09477_consen 17 TGHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQC--HCYPDLEPWAALCA--WKLGLASAL 88 (116)
T ss_dssp HTTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTT--S--GGGHHHHHHHH--HHCT-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhccc--CCCccHHHHHHHHH--HhhccHHHH
Q ss_pred HHHHHHHHHCC
Q 048778 288 FSLKDEMCEKG 298 (902)
Q Consensus 288 ~~~~~~m~~~g 298 (902)
...+.++..+|
T Consensus 89 e~~l~rla~~g 99 (116)
T PF09477_consen 89 ESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHCT-S
T ss_pred HHHHHHHHhCC
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.43 E-value=3e+02 Score=26.57 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES--GFVPSFESHCTVIQG 839 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~ 839 (902)
..-+..+.+.+...+|+...+.-++ -+|.+.. ..+...||-.|++++|..-++-.... ...+....|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3345667788899999999988887 4576666 88999999999999999998887652 223345777777655
No 432
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.13 E-value=1.6e+02 Score=25.40 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 601 LAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
+..+-+..+...++.|+......-+++|.+.+++..|.++|+.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555554
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.88 E-value=1.3e+02 Score=29.93 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILE----SGFV-PSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
..++..|.+.|++++|.++++.+.. .|.. +.......+..++.+.|+.++.+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556666666666666666666641 1111 12233344445555555555555443
No 434
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.77 E-value=4.6e+02 Score=28.48 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=19.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 837 IQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 837 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
....+|.+++.-|..+-+++++.+..+.
T Consensus 307 M~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 307 MSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3455688889999999999887765443
No 435
>PHA03100 ankyrin repeat protein; Provisional
Probab=43.71 E-value=3.7e+02 Score=30.01 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=3.7
Q ss_pred HHHHHcCCH
Q 048778 346 DRLCREGKI 354 (902)
Q Consensus 346 ~~~~~~g~~ 354 (902)
...+..|+.
T Consensus 181 ~~A~~~~~~ 189 (480)
T PHA03100 181 HIAVEKGNI 189 (480)
T ss_pred HHHHHhCCH
Confidence 334444443
No 436
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.70 E-value=2.4e+02 Score=25.25 Aligned_cols=47 Identities=11% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 374 VTYNVLINGYCKQGR-IIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 374 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
..|..++.+..+..- --.+..+|.-|.+.+.+++..-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 344444444433332 22334444444444444555555555554443
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.38 E-value=88 Score=27.27 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 745 HAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 745 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++.++|+.|...+ ...+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666666555 44555566666666666666666666654
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.38 E-value=1.8e+02 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 830 FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 830 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
......++..+...|++++|++.+-++++..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3445555555555666666665555555443
No 439
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.35 E-value=2.2e+02 Score=24.40 Aligned_cols=48 Identities=15% Similarity=-0.049 Sum_probs=26.4
Q ss_pred hccHHHHHHHHHHHHhcC---CC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCG---GS---------TTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~---~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
.|.+++|..-+.++.+.. |+ |..++..|..++...|++++++.-.+..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 346666666665554432 22 3455666777777777777766554444
No 440
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.28 E-value=1.1e+02 Score=31.77 Aligned_cols=63 Identities=6% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 812 DDCLEFMNLILESGFVPSF----ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
++...+++.+++. .|+. ..|.++++++...|.+++.+.+|++++..|-.|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4666666666653 4553 6778888888888999999999999988888877666666666654
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.60 E-value=1.9e+02 Score=28.00 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 048778 782 RIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESH--CTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 782 ~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~--~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+..+++.. +.+.... +.|+--|.-...+.+|...|..- .|+.| |..++ ..-+......|+.++|++.+.+
T Consensus 14 ~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~ 89 (228)
T KOG2659|consen 14 EWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ 89 (228)
T ss_pred hhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH
Confidence 33344443 4444444 55555555444455555555443 33444 33333 3455667899999999999998
Q ss_pred HHhCCCCCcchhHHHHH----HHHhcCCcHhHHHHHHHH
Q 048778 856 LFRYNGIEEKAAVLPYI----EFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 856 ~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~l~~ 890 (902)
.-..-+..+...++.+. --+.+.|+.++|++..+.
T Consensus 90 l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 90 LNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 63222333332333333 225678888888887763
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.27 E-value=3.2e+02 Score=29.36 Aligned_cols=54 Identities=24% Similarity=0.243 Sum_probs=30.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVH--TYTVIINGLCQ--RGRFKEAEMLLFKMFD 646 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 646 (902)
.+...+++..|.++++++... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777665 444443 33444444432 4456666666666554
No 443
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.96 E-value=2.3e+02 Score=29.29 Aligned_cols=47 Identities=13% Similarity=-0.051 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++..|+.--..++..+|.+.-+|..=+.++...+++.+|....+...
T Consensus 134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 66666666666666666666666666666666666666665555543
No 444
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.87 E-value=2.8e+02 Score=24.87 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 163 PCYSCLLMSLAKLDL-GFVAYAVFVKLIADGFVLSAIDYRSVINAL 207 (902)
Q Consensus 163 ~~~~~li~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 207 (902)
.+|++++.+.++..- ---+..+|.-|.+.+.+.+..-|..++.++
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555555443333 223344444444444444444444444444
No 445
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=39.62 E-value=2.3e+02 Score=23.92 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=23.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFY 764 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 764 (902)
+..+++.|+.-+|+++.++++...+.+...|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchH
Confidence 3456777899999999999998886666444
No 446
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=39.40 E-value=5.1e+02 Score=27.71 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHH-HHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCL-EFMNL 820 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~-~~~~~ 820 (902)
.+-+|.-+++..+...|.|...-..|+..|...|-.+.|..+|..+--+.++-|.....+..-+...|....+. ..++.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~ 277 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLEN 277 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHH
Confidence 67788999999999999999999999999999999999999998875444444433333333344444444443 44333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 821 ILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 821 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
....-..-..++-..+..+| +.|.+.+..++.+
T Consensus 278 ~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~ 310 (365)
T PF09797_consen 278 ALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHH
Confidence 33210001112223344444 6677666555543
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.15 E-value=4.8e+02 Score=27.88 Aligned_cols=26 Identities=4% Similarity=-0.200 Sum_probs=16.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLN 687 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~ 687 (902)
.+.+.+++..|.++++++.+...++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 44566677777777777766544443
No 448
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.88 E-value=1.8e+02 Score=23.86 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 742 DVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
+...-.+.++++...+ +..+..+..|+-.|.+.|+.+.|.+-|+.=.. +.|...
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~ 106 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESG 106 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccch
Confidence 4444556666666666 55566667777778888888888777776544 445443
No 449
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.20 E-value=73 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
.+..++..+...|++++|+.+|+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 35566777777888888888744
No 450
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=5.3e+02 Score=27.55 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHhcCCHHHHHHHHHHHHH-CCCC
Q 048778 582 SVVTYTILVDGL--FRAGNIALAMSMIEVMKLAGCPPNVHTYTVI--------INGLCQRGRFKEAEMLLFKMFD-LGVS 650 (902)
Q Consensus 582 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------i~~~~~~g~~~~A~~~~~~m~~-~g~~ 650 (902)
....|-.++-.+ ..++++.+|.++-+.....-..-|..|+..+ -..|-..|+...-..++..... ..+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 344554444333 2346777777776665543223344443332 2233344554444444443331 1122
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 651 PN----HITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 651 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
.| ....+.|++.|...+.++.|..+..+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~ 235 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKS 235 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 22 233444555555556666665555443
No 451
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.66 E-value=2.6e+02 Score=23.95 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=7.8
Q ss_pred HhcCCcHhHHHHHHH
Q 048778 875 LLTGDELGKSIDLLN 889 (902)
Q Consensus 875 ~~~~g~~~~a~~~l~ 889 (902)
+-..|+.++|++.|+
T Consensus 110 l~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 110 LEGLGRKEEALKEFR 124 (144)
T ss_dssp HHHTT-HHHHHHHHH
T ss_pred HHhcCChHHHHHHHH
Confidence 444566666665554
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.59 E-value=5.4e+02 Score=29.80 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH----------ITYSILVRAHASTGRLDHAFKIVSFMVAN 682 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 682 (902)
+...++-.|....+++..+++.+.+... ||. ..|..-++---+-|+-++|+...-.+.++
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh
Confidence 3344455555666666666666666542 221 11222222223457777777777666654
No 453
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.38 E-value=5.9e+02 Score=27.92 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=85.6
Q ss_pred ccHHHHHHHHHHHHhcC--CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHc
Q 048778 741 MDVEHAFRLRDRIESCG--GST--------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCK 807 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~--~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~ 807 (902)
|+..+|++-...|.+.. .|. +.....++-..+..+.++.|+..|..+.+.--.-|-.. ..++-.|..
T Consensus 337 ~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 337 GDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred CCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence 48888888877777664 222 22233344444566788999988888876432222222 667778888
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc----hhHHHHH-HHHh
Q 048778 808 ERKYDDCLEFMNLILESGFVP-SF-----ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK----AAVLPYI-EFLL 876 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~-~~~~ 876 (902)
.|+-+.-.++++.+--.+-.+ .. ..+..-+-..+..|++.||..++.+-++.....|- ..+..|+ ...+
T Consensus 417 ~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~l 496 (629)
T KOG2300|consen 417 IGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFL 496 (629)
T ss_pred hccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Confidence 887776666666553111011 11 11222222335789999999999987766532221 1122222 2234
Q ss_pred cCCcHhHHHHHHHHHHhc
Q 048778 877 TGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~~ 894 (902)
..|+..++.++..-..+.
T Consensus 497 slgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 497 SLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HhcchHHHHhccchHHHH
Confidence 567777766655444333
No 454
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.22 E-value=91 Score=24.16 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=11.3
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 048778 842 SEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~~ 859 (902)
..|++++|+.+|.++++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 456677777777665533
No 455
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.00 E-value=5.5e+02 Score=27.45 Aligned_cols=162 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCchHh
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCG---GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---------GVFPAKA 797 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~ 797 (902)
++..+..+..+|+++.|++.|.++...- ......|..++..-.-.|+|........++... .+.+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Q ss_pred H-HHHHHHHHccCChHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHH
Q 048778 798 I-TSIIGCYCKERKYDDCLEFMNLILESGFV------PSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLP 870 (902)
Q Consensus 798 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (902)
. ..++....+ ++..|.+.|-........ |...+......++.--++-+--+.+...-.-..+-.-......
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Q ss_pred HHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 871 YIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 871 l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
++..++.. +|..+.++++++..+
T Consensus 311 il~~fy~s-ky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 311 ILFKFYSS-KYASCLELLREIKPR 333 (466)
T ss_pred HHHHHhhh-hHHHHHHHHHHhccc
No 456
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.85 E-value=8.9e+02 Score=29.82 Aligned_cols=249 Identities=12% Similarity=0.040 Sum_probs=151.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048778 335 KPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNEL 414 (902)
Q Consensus 335 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 414 (902)
.++..+....+..+.+.+..+ +...+...++. +|...-...+.++.+.+........+..+... +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 457778888888888877644 55555566543 45555555656665543322222334444433 566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 048778 415 MEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP 494 (902)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (902)
+..+...+..+ ...+.. +++ .+|...-...+.++.+.+..+. +..... .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66666544221 222333 332 2566666666777776655432 222222 46777777788888887765
Q ss_pred hH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 048778 495 EL-ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGK 573 (902)
Q Consensus 495 ~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (902)
+. +...+..+.+. ++...-.+.+.++.+.|....+...+..+.+. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 34555565543 57888888889998888866555555555553 566666677788887775 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 048778 574 ILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA 612 (902)
Q Consensus 574 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (902)
+.+ .|+...-...+.++.+.+....+...+..+.+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 664 467777777788887764445677777777663
No 457
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.50 E-value=9e+02 Score=29.78 Aligned_cols=247 Identities=10% Similarity=-0.017 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 406 PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSII 485 (902)
Q Consensus 406 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (902)
+|...-...+..+.+.+..+ +...+..+++. +|...-...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 46666666666666666533 44444444432 34444444444444443221122333333332 4666666666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 048778 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK 565 (902)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (902)
..+...+..+ .. .+-.+.+ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 6666544222 12 2222332 3466666666666666554322 222222 256666666777777766543
Q ss_pred H-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 566 E-EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644 (902)
Q Consensus 566 ~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 644 (902)
. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+++ .+|..+-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 3444555543 35777777888888888876655555555554 3465666667777777665 4566666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 645 FDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 645 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 64 46666667777777765434566666666664
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.37 E-value=1.5e+02 Score=25.80 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
..++|.-|..+|+--.. ..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555544433322 344445555556666666665554
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.32 E-value=3.6e+02 Score=29.02 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=42.5
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCH--HHHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTT--DFYNFLVVEL--CRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 790 (902)
..+..+++.+++..|.++++.+...-|++. ..+..+..+| -..-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344567788899999999999998523333 3455555554 4566899999999988763
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.18 E-value=2.8e+02 Score=34.01 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=78.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG--RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A 814 (902)
....++++.--+.+.+.++........+..++.+|.+.+ ++++|+....++.+. .+..+...+-..+ - +-.+
T Consensus 788 ~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--~~~~ae~alkyl~-f---LvDv 861 (928)
T PF04762_consen 788 ASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--DPESAEEALKYLC-F---LVDV 861 (928)
T ss_pred CccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc--ChHHHHHHHhHhe-e---eccH
Confidence 344556777777777766543444555667778888888 899999999998864 1221112222211 1 2334
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
-++|+.++.- -|.+. .+.-+-..+.+..|=+.+++++.+++ +... ..-++-+ .|+|+.|++.|.++
T Consensus 862 n~Ly~~ALG~---YDl~L--al~VAq~SQkDPKEYLPfL~~L~~l~--~~~r--ry~ID~h--LkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 862 NKLYDVALGT---YDLEL--ALMVAQQSQKDPKEYLPFLQELQKLP--PLYR--RYKIDDH--LKRYEKALRHLSAC 927 (928)
T ss_pred HHHHHHHhhh---cCHHH--HHHHHHHhccChHHHHHHHHHHHhCC--hhhe--eeeHhhh--hCCHHHHHHHHHhh
Confidence 4455544431 11111 12223335667888888888875543 2222 1233433 45899999888754
No 461
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.83 E-value=1.3e+02 Score=20.81 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=16.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 174 KLDLGFVAYAVFVKLIADGFVLSAIDYRSVI 204 (902)
Q Consensus 174 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 204 (902)
+.|...++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555665555555555554444
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.58 E-value=4.8e+02 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=11.9
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 048778 802 IGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+-.|.-.|+...|...++...
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334555566666666665554
No 463
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=4.7e+02 Score=26.15 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=71.8
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChH-HH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYD-DC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~-~A 814 (902)
+.+....+.|.++-+.++..+|.+-..|..--..+...+ +..+-++.+.++.+.+.+.=.+...--......|+.. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 334446777888888888888777777765555444443 4666667777777654333333322222223334555 55
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+++.+.|+... ..+-.+|.+--+++..-+.+++-+.+..++++.++
T Consensus 133 Lef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 133 LEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 66667776521 23345555555555555667777777777665553
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.07 E-value=37 Score=29.51 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=18.0
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLIN 381 (902)
Q Consensus 350 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 381 (902)
+.|.-.+|..+|.+|+++|-+||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345556666677777766666653 555554
No 465
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.89 E-value=1.1e+02 Score=24.08 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcchhHHHHHHHHhcCCcHhHHHH
Q 048778 810 KYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY---NGIEEKAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
-+++|...+++.+.. -..|..++|+..|++.+.. ++.-... .......|+.|.+
T Consensus 4 ~~~~A~~~I~kaL~~----------------dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~ 60 (79)
T cd02679 4 YYKQAFEEISKALRA----------------DEWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARR 60 (79)
T ss_pred HHHHHHHHHHHHhhh----------------hhcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHH
Confidence 355666666666542 2446777777777764322 2111100 1233455777777
Q ss_pred HHHHHHh
Q 048778 887 LLNLIDQ 893 (902)
Q Consensus 887 ~l~~~~~ 893 (902)
+.++|..
T Consensus 61 ~~~Km~~ 67 (79)
T cd02679 61 LQQKMKT 67 (79)
T ss_pred HHHHHHH
Confidence 7766653
No 466
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.71 E-value=4e+02 Score=25.19 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=7.4
Q ss_pred cCChHHHHHHHHHHH
Q 048778 386 QGRIIAAFELLALME 400 (902)
Q Consensus 386 ~g~~~~A~~~~~~m~ 400 (902)
.|+++.|.+.++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 445555555554443
No 467
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.13 E-value=6.5e+02 Score=27.45 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=19.6
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 048778 281 VGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA 312 (902)
Q Consensus 281 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 312 (902)
.++++.|+.++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46677777777777777766654444444433
No 468
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.00 E-value=5.2e+02 Score=26.29 Aligned_cols=113 Identities=9% Similarity=0.051 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048778 389 IIAAFELLALMEK-RTCKPNIRTYNELMEGLCR-MN-KSYKAVHLLKRVVD-GGLFPDEITYNILVDGFCREGQLDIALK 464 (902)
Q Consensus 389 ~~~A~~~~~~m~~-~~~~p~~~t~~~li~~~~~-~g-~~~~A~~~~~~~~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 464 (902)
+.+|+++|+.... ..+.-|......+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542221 1233344555555554443 11 12222233333332 2334566666677777777777777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 048778 465 IFNSMSIF-GLVPDGFTFTSIIDGLCKLGKPELANGFF 501 (902)
Q Consensus 465 ~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (902)
.++..... +...|...|..+|....+.|+..-...+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77766554 44556777777777777777765444443
No 469
>PRK12798 chemotaxis protein; Reviewed
Probab=33.38 E-value=6.4e+02 Score=27.17 Aligned_cols=51 Identities=22% Similarity=0.155 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA-STGRLDHAFKIVSFMVA 681 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 681 (902)
.|+..+|.+.+..+.....++....|-.|+.+-. ...+..+|+++++...=
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 5777777777777765556666777777766543 34567777777777653
No 470
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.19 E-value=8.5e+02 Score=28.50 Aligned_cols=209 Identities=8% Similarity=-0.071 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 561 ENKLKEEYAMFGKILKFG-LVPS--VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (902)
..+.+.|..++....... ..+. ...+..+.......+..++|...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888888764432 2222 2233444333333332556666666554332 2444445555566688999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 638 EMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 638 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
...+..|-... .-...-..-+..++...|+.++|..+|+.+.. ..+ .|..|. . .+.|..-. ... . .
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LA-a-~~Lg~~~~-~~~---~--~ 397 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVA-A-QRLGEEYP-LKI---D--K 397 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHH-H-HHcCCCCC-CCC---C--C
Confidence 98888885432 23444555677887889999999999999853 222 333222 2 12331100 000 0 0
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
............-...+..+...|...+|...+..+... .+......++..-.+.|.++.++......
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000000001111233455677788999999888888774 34556677777777888888887766543
No 471
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.07 E-value=1.5e+02 Score=20.51 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=14.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 280 EVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 280 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
+.|-.+++..++++|.+.|+.-+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444444555555555544444444433
No 472
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.67 E-value=1.8e+02 Score=27.57 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=18.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 265 RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCE 296 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 296 (902)
.|+..+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 473
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.14 E-value=4.2e+02 Score=32.59 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
++-+-..+.|..|-+-+++++.+. +|...- ..++ ...|++++|+..+.+
T Consensus 878 l~VAq~SQkDPKEYLPfL~~L~~l--~~~~rr--y~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 878 LMVAQQSQKDPKEYLPFLQELQKL--PPLYRR--YKID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHhccChHHHHHHHHHHHhC--Chhhee--eeHh--hhhCCHHHHHHHHHh
Confidence 344445566888888888888663 333211 1111 245889999887765
No 474
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.01 E-value=1.6e+02 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=19.8
Q ss_pred CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048778 300 QPSTRTYTVLIKALCDISLTDKALSLFDEMVV 331 (902)
Q Consensus 300 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 331 (902)
.|++.+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666666666666666665554
No 475
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.91 E-value=3.5e+02 Score=30.61 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
+.+.|.+.++++.+.+|.++..-..+.......|+-++|+.......
T Consensus 409 QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 409 QLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 55555555555555555555544444445555555555555554443
No 476
>PRK12798 chemotaxis protein; Reviewed
Probab=31.83 E-value=6.8e+02 Score=26.99 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=107.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLC-QRGRFKEAEMLLFKMFDLGVSPN----HITYSILVRAHASTGRL 669 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~ 669 (902)
-.|+.++|.+.+..+.....++....|-.|+.+-. ...+...|+++|+...-. .|. ......-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 36778888888877776666666777777766644 345678888888877642 233 23344445556677888
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHH-HHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 670 DHAFKIVSFMVAN-GCQLNSNVY-SALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 670 ~~A~~~~~~m~~~-g~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+++..+-..-... ...|-..-+ ..+...+.+..+. ...+.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~------------------------------------~~~~~-- 243 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE------------------------------------IRDAR-- 243 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc------------------------------------ccHHH--
Confidence 8777665555442 223322222 2223333333300 01222
Q ss_pred HHHHHHHhc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHH-----ccCChHHHHHHHHH
Q 048778 748 RLRDRIESC-G-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYC-----KERKYDDCLEFMNL 820 (902)
Q Consensus 748 ~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~-----~~g~~~~A~~~~~~ 820 (902)
+..++.. + +.-...|..++..-...|+.+-|.-.-+++.... .++......+..|. -..++++|.+.+..
T Consensus 244 --l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~-~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 244 --LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA-DPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred --HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc-cCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 3333332 2 2335578888888888888888888888887643 11111133333332 34467777777777
Q ss_pred HHHcCCCC
Q 048778 821 ILESGFVP 828 (902)
Q Consensus 821 ~~~~~~~p 828 (902)
+-...+.|
T Consensus 321 I~~~~L~~ 328 (421)
T PRK12798 321 IDRDKLSE 328 (421)
T ss_pred CChhhCCh
Confidence 65544444
No 477
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=31.62 E-value=1.4e+02 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 048778 100 STYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELI 133 (902)
Q Consensus 100 ~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~ 133 (902)
..|.|+...|+.+++.....+.+..|+..+...+
T Consensus 10 ~~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 10 FTFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred EEeccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 4588999999999999999999999988777665
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.48 E-value=2.2e+02 Score=30.66 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=41.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH--HcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLIL--ESGF---VP--SFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..|++.++-.|++..|++.++.+- +.++ .| ...++..++-+|...+++.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888887653 1111 12 23667788888888888888888888754
No 479
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.37 E-value=5.2e+02 Score=25.50 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
|++-++++.-.+.+...|.|..+|..-+.+....=+..+|.+-|+++++
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3888888999999998899999999888888888888999999999988
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.99 E-value=2.1e+02 Score=28.56 Aligned_cols=61 Identities=7% Similarity=-0.097 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRY----NG-IEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
....++..|.+.|++++|.++++.+... ++ .+...+...+..+..+.|+.++.+.+.=+|.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3456888899999999999999998533 21 2224445566677788999998887765554
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.67 E-value=93 Score=23.33 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ 630 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (902)
|....++.++..+++..-.++++..+.++...| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455556666665555666666666666655 3444455444444443
No 482
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.63 E-value=5.6e+02 Score=25.63 Aligned_cols=146 Identities=8% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc-cC-----ChHHHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK-ER-----KYDDCLEFM 818 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~-~g-----~~~~A~~~~ 818 (902)
.-+++.+.|+..+..|-.+|..--+.+..-+.++.-+....++++..+..+.+.+.-...... .| ..+.-+.+.
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt 210 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYT 210 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHH
Confidence 445666777776677778888777777777778888888888877655555443111101111 11 123333444
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHHh-cC--CHHHHHHHHHHHHhCCCCCcchhHHHHHHHH------hcCCcHh---HHH
Q 048778 819 NLILESGFVPSF-ESHCTVIQGLQS-EG--RNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL------LTGDELG---KSI 885 (902)
Q Consensus 819 ~~~~~~~~~p~~-~~~~~l~~~l~~-~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~g~~~---~a~ 885 (902)
.+++. +.|+. ..|+.|.-.+.. .| ...+...+............+.....+++.| .+.+.-+ +|.
T Consensus 211 ~~~I~--~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~ 288 (318)
T KOG0530|consen 211 KDKIL--LVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAV 288 (318)
T ss_pred HHHHH--hCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 44444 35543 566666555553 44 1233444444432121222233333344444 2334444 566
Q ss_pred HHHHHHH
Q 048778 886 DLLNLID 892 (902)
Q Consensus 886 ~~l~~~~ 892 (902)
++++.|.
T Consensus 289 ~ly~~La 295 (318)
T KOG0530|consen 289 KLYEDLA 295 (318)
T ss_pred HHHHHHh
Confidence 6676665
No 483
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=30.34 E-value=3.4e+02 Score=23.00 Aligned_cols=46 Identities=11% Similarity=-0.075 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
-.+.+.|.+.....|.....+..|+.-+.....++++..-.++.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666665555566666666655543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.62 E-value=6.1e+02 Score=25.69 Aligned_cols=30 Identities=3% Similarity=0.017 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
-...+..+...|++.++.+.+.++..+..+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 355666777777777777777776665544
No 485
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.50 E-value=98 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHF 370 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 370 (902)
|+..|....+.||+++|+.+++|..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555556666666666666666555543
No 486
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=28.87 E-value=6.8e+02 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=29.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhCC
Q 048778 175 LDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKS------GLVRAGEMFFCRVLKHG 227 (902)
Q Consensus 175 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~g 227 (902)
.+.+++++.++++....+. |.++.....|.++-.. -++..-..+|+-+...+
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a 326 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA 326 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC
Confidence 3456677777777766664 6676666666555311 23445555555555443
No 487
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.67 E-value=3.5e+02 Score=25.36 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048778 319 TDKALSLFDEMVVKRCKP-------NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGR 388 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 388 (902)
++.|+.+|+.+.+.-..| ....--..+..|.+.|.+++|.+++++..+. |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.55 E-value=6.2e+02 Score=25.47 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIV 676 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~ 676 (902)
|......+...|.+.|++.+|...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677778888888888888887655
No 489
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.34 E-value=5.9e+02 Score=25.16 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-GRLDHAFKIVSFMV 680 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~ 680 (902)
++..+.+.|+++++...++++...+...+..-.+.|..+|-.. |..-.+++.+..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4445556666666666666666655555555555555554322 33344444444443
No 490
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.22 E-value=3.2e+02 Score=21.99 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.8
Q ss_pred CCHhHHHHHHHHHH
Q 048778 352 GKIDEANGMCGKML 365 (902)
Q Consensus 352 g~~~~A~~~~~~m~ 365 (902)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444443
No 491
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.07 E-value=4.1e+02 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHHhcCCcHhHHHHHHH
Q 048778 870 PYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 870 ~l~~~~~~~g~~~~a~~~l~ 889 (902)
.....+-..|++.+|.++++
T Consensus 104 ~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 104 EWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 33344444555555555544
No 492
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.81 E-value=3e+02 Score=24.75 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred HhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 151 DGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGL 212 (902)
Q Consensus 151 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 212 (902)
..+++.|.+++.. --.++..+...+..-.|.++|+++.+.+...+..|....++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445566655432 345677777777778888888888887766666666666666665553
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.55 E-value=6.4e+02 Score=31.48 Aligned_cols=127 Identities=16% Similarity=0.055 Sum_probs=84.2
Q ss_pred hhhhhhhhccHHHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCchHhH--
Q 048778 733 SSKNFLREMDVEHAFR------LRD-RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-----KSGVFPAKAI-- 798 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~-- 798 (902)
.++.....|.+.+|.+ ++. .+..+.|+....|..|+..+.+.|+.++|+..-.++. -.|..+.+..
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3344444556666665 776 5555568889999999999999999999998876653 2233332222
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 799 -TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
..+.-.+...+....|...+.++.. .| ..|.. .+...+...+...++.+.|+++++.+.+.
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4444445556688888888877763 12 13443 44455555666678999999999998754
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.05 E-value=2.8e+02 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=9.5
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 048778 238 LVLGHCRGNDLKEAFKVFDVM 258 (902)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~m 258 (902)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555444
No 495
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.77 E-value=8.6e+02 Score=26.52 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCC
Q 048778 588 ILVDGLFR---AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR-----FKEAEMLLFKMFDLGVSPN 652 (902)
Q Consensus 588 ~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~ 652 (902)
.++.++.+ .++.+.|+..+..|.+.|..|....-..++.++...|. ..-|...++.....|++-.
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 34444443 46788888888888888877776665555555544442 2234444555555664433
No 496
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.42 E-value=3.9e+02 Score=22.49 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 048778 376 YNVLINGYCKQGRIIAAFELLALMEK 401 (902)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (902)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777665
No 497
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=5.8e+02 Score=24.19 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=7.9
Q ss_pred HhcCChHHHHHHHHHH
Q 048778 208 CKSGLVRAGEMFFCRV 223 (902)
Q Consensus 208 ~~~~~~~~a~~~~~~~ 223 (902)
...|++++|..-++++
T Consensus 40 ~H~~~~eeA~~~l~~a 55 (204)
T COG2178 40 LHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHhccHHHHHHHHHHH
Confidence 3445555555544444
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.38 E-value=5.4e+02 Score=27.80 Aligned_cols=59 Identities=10% Similarity=-0.099 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-C-C-----CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFR-Y-N-----GIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~-~-~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
..+.++.+-.|++..|++.++.+-- . + ..-...++.+++-+|+=.++|.+|+++|..+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788889999999999987410 0 0 11123456788888999999999999998765
No 499
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.11 E-value=1.3e+02 Score=30.50 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGC 614 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~ 614 (902)
+..|....+.||+++|++++++..+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3555555555555555555555555543
No 500
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.60 E-value=3.5e+02 Score=24.25 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=21.4
Q ss_pred HHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 786 DIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 786 ~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
.+.+.|++....-..++..+.+.+..-.|.++++.+.+.+
T Consensus 11 ~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 11 RLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 3344444444433555555555555566666666666544
Done!