Query 048778
Match_columns 902
No_of_seqs 816 out of 4852
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 23:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-40 9.5E-45 383.9 40.8 502 230-805 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.9E-39 2E-43 372.8 42.7 524 172-772 63-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 2E-29 7E-34 278.3 25.7 204 216-420 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.7E-29 1.3E-33 276.3 25.3 203 183-386 11-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.3E-26 1.8E-30 247.9 47.8 378 450-879 6-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1E-25 3.5E-30 245.6 48.2 377 417-844 8-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.5E-23 8.6E-28 236.3 41.1 449 338-862 6-481 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.8E-27 231.0 40.4 455 268-798 6-484 (514)
9 1xi4_A Clathrin heavy chain; a 99.9 6.8E-18 2.3E-22 195.7 72.9 722 91-895 710-1561(1630)
10 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.6E-26 217.1 40.0 320 407-798 25-364 (450)
11 1xi4_A Clathrin heavy chain; a 99.9 3E-17 1E-21 190.3 74.1 101 85-189 525-634 (1630)
12 2y4t_A DNAJ homolog subfamily 99.9 6.4E-21 2.2E-25 212.3 41.5 312 476-859 24-358 (450)
13 3fp2_A TPR repeat-containing p 99.9 2.1E-21 7.2E-26 221.7 37.4 431 372-863 24-495 (537)
14 3fp2_A TPR repeat-containing p 99.9 1.2E-20 4.1E-25 215.5 42.0 446 269-791 26-492 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 2.8E-18 9.5E-23 184.4 40.7 314 479-874 4-349 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 5.4E-18 1.9E-22 182.1 39.4 198 446-647 6-217 (359)
17 2xm6_A Protein corresponding t 99.8 2.8E-16 9.5E-21 176.3 53.2 265 393-681 27-324 (490)
18 2xm6_A Protein corresponding t 99.8 4.3E-16 1.5E-20 174.7 51.7 382 337-789 38-466 (490)
19 3hym_B Cell division cycle pro 99.8 6E-18 2E-22 179.4 33.0 293 545-882 19-322 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.8E-16 9.5E-21 178.2 46.0 419 406-895 11-493 (530)
21 3hym_B Cell division cycle pro 99.8 1.7E-17 5.9E-22 175.8 32.0 289 511-847 20-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 1.7E-15 5.9E-20 171.7 46.5 429 361-860 2-493 (530)
23 1fch_A Peroxisomal targeting s 99.8 5.4E-18 1.8E-22 182.9 24.6 299 561-890 38-355 (368)
24 1fch_A Peroxisomal targeting s 99.8 1E-17 3.5E-22 180.8 24.9 288 525-856 37-356 (368)
25 1b89_A Protein (clathrin heavy 99.8 8.7E-18 3E-22 175.7 21.3 392 350-855 15-413 (449)
26 4eqf_A PEX5-related protein; a 99.8 9.9E-18 3.4E-22 180.6 22.1 262 547-855 64-352 (365)
27 4eqf_A PEX5-related protein; a 99.8 1.9E-17 6.5E-22 178.4 24.1 272 582-890 64-352 (365)
28 4g1t_A Interferon-induced prot 99.8 4E-16 1.4E-20 174.6 34.0 347 513-896 94-461 (472)
29 3cv0_A Peroxisome targeting si 99.8 8.5E-17 2.9E-21 170.2 26.4 274 586-892 24-313 (327)
30 1b89_A Protein (clathrin heavy 99.8 2.1E-17 7.2E-22 172.8 19.3 286 420-784 15-305 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.7 2.3E-18 7.8E-23 193.7 12.0 120 231-350 126-248 (1134)
32 3cv0_A Peroxisome targeting si 99.7 1.6E-16 5.5E-21 168.1 25.8 265 548-857 21-313 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-18 2.1E-22 190.2 13.5 119 267-385 126-248 (1134)
34 3mkr_A Coatomer subunit epsilo 99.7 5.8E-16 2E-20 159.6 26.8 269 524-852 10-287 (291)
35 4g1t_A Interferon-induced prot 99.7 4.4E-15 1.5E-19 166.1 35.6 366 337-790 50-459 (472)
36 3mkr_A Coatomer subunit epsilo 99.7 9.6E-16 3.3E-20 157.9 27.2 254 488-797 9-269 (291)
37 2pl2_A Hypothetical conserved 99.7 3.3E-15 1.1E-19 146.8 21.3 196 650-891 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.7 1.4E-14 4.8E-19 147.1 25.2 225 583-860 5-237 (258)
39 2pl2_A Hypothetical conserved 99.6 1.7E-14 5.9E-19 141.7 22.9 207 615-856 2-211 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 4.9E-14 1.7E-18 155.2 27.4 193 585-825 178-388 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 3.2E-14 1.1E-18 156.7 25.4 375 449-895 9-422 (452)
42 3uq3_A Heat shock protein STI1 99.6 9.6E-14 3.3E-18 140.9 25.5 220 551-823 8-235 (258)
43 2h6f_A Protein farnesyltransfe 99.6 9.1E-14 3.1E-18 147.9 25.4 245 583-876 97-364 (382)
44 3u4t_A TPR repeat-containing p 99.6 1E-13 3.6E-18 142.0 24.8 233 586-861 6-252 (272)
45 3u4t_A TPR repeat-containing p 99.6 1.1E-13 3.8E-18 141.8 23.0 234 619-896 4-252 (272)
46 1ouv_A Conserved hypothetical 99.6 2.4E-12 8.2E-17 131.8 32.9 225 582-861 5-253 (273)
47 1ouv_A Conserved hypothetical 99.6 2.6E-12 9E-17 131.5 32.6 224 547-825 5-252 (273)
48 2h6f_A Protein farnesyltransfe 99.6 2.9E-13 1E-17 144.0 25.3 245 548-841 97-364 (382)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-13 8.8E-18 139.3 23.2 243 596-888 18-269 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.4E-13 8.1E-18 139.5 22.1 243 561-853 18-269 (275)
51 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.4E-17 132.1 26.1 199 618-860 37-239 (252)
52 2ho1_A Type 4 fimbrial biogene 99.5 1.5E-12 5.2E-17 131.5 26.4 198 584-824 38-238 (252)
53 2vq2_A PILW, putative fimbrial 99.5 1.4E-12 4.9E-17 129.0 25.2 201 617-860 7-212 (225)
54 2q7f_A YRRB protein; TPR, prot 99.5 4E-13 1.4E-17 134.9 21.3 197 620-860 25-223 (243)
55 2q7f_A YRRB protein; TPR, prot 99.5 5.4E-13 1.8E-17 133.9 22.1 199 582-824 22-222 (243)
56 2vq2_A PILW, putative fimbrial 99.5 3.8E-12 1.3E-16 125.9 27.9 202 582-824 7-211 (225)
57 4a1s_A PINS, partner of inscut 99.5 3.5E-13 1.2E-17 147.6 21.2 269 586-894 51-372 (411)
58 3sf4_A G-protein-signaling mod 99.5 4.4E-13 1.5E-17 146.4 21.4 294 581-894 7-336 (406)
59 3sf4_A G-protein-signaling mod 99.5 3.2E-13 1.1E-17 147.5 19.6 291 551-881 12-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 6.5E-13 2.2E-17 145.4 20.9 268 554-861 54-374 (411)
61 3ro2_A PINS homolog, G-protein 99.5 6.7E-13 2.3E-17 140.6 19.9 290 586-895 8-333 (338)
62 4e6h_A MRNA 3'-END-processing 99.5 1.1E-09 3.8E-14 124.2 46.1 218 567-824 328-570 (679)
63 3vtx_A MAMA; tetratricopeptide 99.5 2.7E-12 9.1E-17 122.5 21.1 167 728-896 6-172 (184)
64 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5E-17 144.4 21.5 220 598-855 83-317 (474)
65 3vtx_A MAMA; tetratricopeptide 99.5 9E-12 3.1E-16 118.8 24.0 166 582-789 4-169 (184)
66 4e6h_A MRNA 3'-END-processing 99.5 1.5E-09 5.2E-14 123.2 44.9 230 531-805 327-584 (679)
67 3ulq_A Response regulator aspa 99.5 1E-11 3.4E-16 134.3 25.6 229 589-859 109-368 (383)
68 3ro2_A PINS homolog, G-protein 99.4 1.4E-12 4.7E-17 138.1 18.1 267 554-860 11-333 (338)
69 2ond_A Cleavage stimulation fa 99.4 4.8E-11 1.7E-15 124.3 29.3 218 635-897 33-273 (308)
70 3ulq_A Response regulator aspa 99.4 2.2E-11 7.4E-16 131.7 25.6 229 624-894 109-368 (383)
71 4abn_A Tetratricopeptide repea 99.4 3.2E-12 1.1E-16 141.7 19.1 211 633-891 83-318 (474)
72 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.7E-15 121.6 28.9 216 600-859 33-270 (308)
73 3nf1_A KLC 1, kinesin light ch 99.4 3.7E-12 1.3E-16 133.2 16.8 236 583-859 27-307 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-11 4.8E-16 128.8 19.5 203 653-894 27-307 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.4 8.8E-12 3E-16 143.4 18.1 155 735-894 17-174 (723)
76 3q15_A PSP28, response regulat 99.3 2E-10 6.7E-15 123.8 25.9 229 588-858 106-364 (378)
77 3q15_A PSP28, response regulat 99.3 5.7E-10 2E-14 120.1 27.2 228 622-893 105-364 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.3 4.2E-11 1.4E-15 137.8 19.0 112 742-857 58-172 (723)
79 4i17_A Hypothetical protein; T 99.3 5.8E-10 2E-14 110.4 23.2 194 617-861 6-211 (228)
80 4i17_A Hypothetical protein; T 99.3 5.2E-10 1.8E-14 110.7 22.2 208 581-839 5-223 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 2.8E-10 9.5E-15 108.3 19.5 162 655-859 10-173 (186)
82 3as5_A MAMA; tetratricopeptide 99.3 5.4E-10 1.8E-14 106.2 21.2 162 586-789 11-172 (186)
83 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 117.9 26.0 266 589-893 20-321 (373)
84 1hz4_A MALT regulatory protein 99.2 3E-09 1E-13 114.3 28.0 264 557-859 23-322 (373)
85 3edt_B KLC 2, kinesin light ch 99.2 2.5E-10 8.5E-15 117.2 18.0 225 630-894 13-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 3.8E-10 1.3E-14 115.8 18.5 157 664-859 12-198 (283)
87 1qqe_A Vesicular transport pro 99.2 7.5E-10 2.6E-14 114.1 19.7 94 763-858 119-227 (292)
88 3qky_A Outer membrane assembly 99.1 2.9E-09 9.8E-14 107.9 19.7 119 616-766 13-136 (261)
89 3qky_A Outer membrane assembly 99.1 1.6E-09 5.3E-14 109.8 17.6 167 728-896 16-226 (261)
90 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.7E-14 112.1 17.0 189 627-856 46-266 (292)
91 3urz_A Uncharacterized protein 99.1 2.6E-09 8.7E-14 103.7 17.9 114 742-859 69-186 (208)
92 4ga2_A E3 SUMO-protein ligase 99.1 4.3E-10 1.5E-14 102.5 10.4 141 735-880 5-149 (150)
93 3urz_A Uncharacterized protein 99.1 4.3E-09 1.5E-13 102.1 17.9 128 763-896 56-188 (208)
94 2yhc_A BAMD, UPF0169 lipoprote 99.1 5E-09 1.7E-13 103.2 18.5 168 729-898 6-217 (225)
95 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 102.9 12.9 162 728-893 7-172 (176)
96 2pzi_A Probable serine/threoni 99.0 1.6E-09 5.6E-14 125.6 16.4 182 664-891 402-602 (681)
97 3mv2_B Coatomer subunit epsilo 99.0 4.2E-08 1.5E-12 98.4 24.1 183 567-797 85-287 (310)
98 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 91.0 17.2 123 734-859 8-132 (136)
99 3qou_A Protein YBBN; thioredox 99.0 5.1E-09 1.7E-13 107.4 16.7 148 742-893 132-283 (287)
100 3mv2_B Coatomer subunit epsilo 99.0 1.5E-07 5E-12 94.5 26.3 265 451-789 21-304 (310)
101 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.4E-14 100.1 9.5 142 659-845 3-149 (150)
102 2pzi_A Probable serine/threoni 99.0 2.9E-09 9.8E-14 123.5 15.4 171 594-810 402-583 (681)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.5E-08 8.4E-13 98.2 19.8 195 618-861 4-215 (225)
104 3dra_A Protein farnesyltransfe 99.0 1.3E-07 4.3E-12 96.2 25.0 111 745-857 164-285 (306)
105 3dra_A Protein farnesyltransfe 99.0 1.2E-07 4.2E-12 96.3 24.8 221 633-893 48-286 (306)
106 3rjv_A Putative SEL1 repeat pr 99.0 5.3E-08 1.8E-12 94.6 21.0 73 602-681 5-81 (212)
107 2fo7_A Synthetic consensus TPR 99.0 3.6E-08 1.2E-12 87.6 18.2 128 621-789 4-131 (136)
108 3rjv_A Putative SEL1 repeat pr 98.9 7.5E-08 2.6E-12 93.5 21.3 182 635-862 3-200 (212)
109 3qou_A Protein YBBN; thioredox 98.9 1.8E-08 6.1E-13 103.3 17.2 165 616-822 115-282 (287)
110 2vsy_A XCC0866; transferase, g 98.9 1.1E-08 3.9E-13 116.6 17.2 151 741-896 3-159 (568)
111 2r5s_A Uncharacterized protein 98.9 6.8E-09 2.3E-13 97.7 12.6 160 622-823 10-172 (176)
112 3gyz_A Chaperone protein IPGC; 98.9 2.8E-09 9.7E-14 96.4 9.2 117 742-862 17-136 (151)
113 2vsy_A XCC0866; transferase, g 98.9 3.7E-08 1.3E-12 112.3 17.7 151 631-825 2-158 (568)
114 4gco_A Protein STI-1; structur 98.8 3.1E-08 1E-12 86.9 12.6 102 756-861 8-112 (126)
115 2uy1_A Cleavage stimulation fa 98.8 2.9E-06 9.9E-11 93.5 31.3 375 389-858 11-412 (493)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 1.1E-07 3.8E-12 98.6 18.7 194 596-857 4-222 (307)
117 4gco_A Protein STI-1; structur 98.8 4.5E-08 1.5E-12 85.8 12.6 106 730-839 16-124 (126)
118 3gyz_A Chaperone protein IPGC; 98.8 6.6E-08 2.3E-12 87.3 14.0 85 742-830 51-137 (151)
119 2uy1_A Cleavage stimulation fa 98.8 6.7E-06 2.3E-10 90.6 32.9 392 174-646 6-412 (493)
120 2c2l_A CHIP, carboxy terminus 98.8 9.2E-08 3.1E-12 97.5 15.7 192 652-894 3-199 (281)
121 2vgx_A Chaperone SYCD; alterna 98.8 3.6E-08 1.2E-12 89.4 11.2 111 747-861 7-120 (148)
122 3u3w_A Transcriptional activat 98.8 8.8E-07 3E-11 91.1 22.9 151 742-892 90-264 (293)
123 2ifu_A Gamma-SNAP; membrane fu 98.7 9.2E-08 3.2E-12 99.2 14.8 197 630-892 3-222 (307)
124 4f3v_A ESX-1 secretion system 98.7 2.9E-07 9.8E-12 91.1 17.0 133 735-871 110-247 (282)
125 3u3w_A Transcriptional activat 98.7 3.2E-06 1.1E-10 86.8 25.8 162 659-859 81-266 (293)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.9E-07 2.7E-11 86.4 19.8 126 656-824 9-150 (213)
127 3q7a_A Farnesyltransferase alp 98.7 6E-06 2.1E-10 84.6 26.6 183 559-777 65-258 (349)
128 3q7a_A Farnesyltransferase alp 98.7 3.3E-06 1.1E-10 86.5 24.5 227 595-857 66-329 (349)
129 3gw4_A Uncharacterized protein 98.7 2E-07 6.9E-12 89.8 15.0 156 739-894 4-176 (203)
130 4f3v_A ESX-1 secretion system 98.7 6.9E-08 2.4E-12 95.5 11.5 132 763-897 104-240 (282)
131 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-08 5.6E-13 106.1 6.8 146 742-892 128-292 (336)
132 2qfc_A PLCR protein; TPR, HTH, 98.7 1.4E-06 4.7E-11 89.6 21.1 165 655-859 77-266 (293)
133 1a17_A Serine/threonine protei 98.7 2.7E-07 9.2E-12 85.5 14.2 118 735-856 21-143 (166)
134 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.9E-12 89.3 11.4 123 737-863 20-148 (177)
135 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.7E-06 5.9E-11 83.9 20.1 130 621-796 9-154 (213)
136 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 81.5 16.9 129 654-822 14-144 (166)
137 4gcn_A Protein STI-1; structur 98.6 5.7E-07 2E-11 78.8 13.6 85 737-823 18-111 (127)
138 3dss_A Geranylgeranyl transfer 98.6 2.6E-05 8.7E-10 79.6 27.2 232 561-823 42-303 (331)
139 2xcb_A PCRH, regulatory protei 98.6 2.4E-07 8.1E-12 83.3 11.0 109 748-860 5-116 (142)
140 2qfc_A PLCR protein; TPR, HTH, 98.6 5.1E-06 1.7E-10 85.3 22.3 162 620-823 77-265 (293)
141 3dss_A Geranylgeranyl transfer 98.6 2.2E-05 7.7E-10 80.1 25.9 47 743-789 126-173 (331)
142 2c2l_A CHIP, carboxy terminus 98.6 8.2E-07 2.8E-11 90.4 15.4 192 582-823 3-198 (281)
143 3gw4_A Uncharacterized protein 98.6 1.3E-06 4.4E-11 84.0 16.0 118 742-859 41-176 (203)
144 1p5q_A FKBP52, FK506-binding p 98.5 6.2E-07 2.1E-11 94.0 14.3 122 732-857 152-292 (336)
145 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.5E-11 76.5 15.0 48 742-789 65-112 (133)
146 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-07 9E-12 83.6 9.2 80 742-823 36-117 (148)
147 2e2e_A Formate-dependent nitri 98.5 5.7E-07 2E-11 84.4 11.9 119 630-789 22-143 (177)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 1.1E-07 3.7E-12 91.4 7.0 149 742-895 19-187 (198)
149 4gcn_A Protein STI-1; structur 98.5 3.8E-07 1.3E-11 80.0 9.7 102 760-863 7-116 (127)
150 3upv_A Heat shock protein STI1 98.5 1.1E-06 3.8E-11 76.9 12.8 88 734-823 11-100 (126)
151 1na0_A Designed protein CTPR3; 98.5 4.2E-06 1.4E-10 72.6 16.4 59 621-680 12-70 (125)
152 2lni_A Stress-induced-phosphop 98.5 2.7E-06 9.3E-11 75.0 15.0 119 617-776 15-133 (133)
153 1na0_A Designed protein CTPR3; 98.5 4.6E-06 1.6E-10 72.4 16.2 48 742-789 58-105 (125)
154 2vyi_A SGTA protein; chaperone 98.5 3.2E-06 1.1E-10 74.2 15.2 80 742-823 27-108 (131)
155 2vyi_A SGTA protein; chaperone 98.5 3.4E-06 1.2E-10 74.0 15.1 60 621-681 15-74 (131)
156 2xcb_A PCRH, regulatory protei 98.5 9E-07 3.1E-11 79.5 11.0 89 734-824 25-115 (142)
157 3upv_A Heat shock protein STI1 98.4 3.1E-06 1.1E-10 74.0 13.9 98 653-790 4-101 (126)
158 1wao_1 Serine/threonine protei 98.4 7.4E-07 2.5E-11 98.2 11.7 121 730-854 9-134 (477)
159 1hxi_A PEX5, peroxisome target 98.4 7.8E-07 2.7E-11 77.1 9.1 94 729-824 19-114 (121)
160 2kck_A TPR repeat; tetratricop 98.4 2.9E-06 1E-10 72.1 11.9 58 732-789 11-68 (112)
161 3q49_B STIP1 homology and U bo 98.4 3.9E-06 1.3E-10 74.6 13.0 79 742-822 24-104 (137)
162 2kck_A TPR repeat; tetratricop 98.4 3.5E-06 1.2E-10 71.6 12.0 104 757-862 2-109 (112)
163 3sz7_A HSC70 cochaperone (SGT) 98.4 3.3E-06 1.1E-10 78.0 12.7 94 729-824 13-108 (164)
164 3sz7_A HSC70 cochaperone (SGT) 98.4 4.1E-06 1.4E-10 77.3 13.1 101 758-862 8-111 (164)
165 1elw_A TPR1-domain of HOP; HOP 98.3 9.1E-06 3.1E-10 69.6 14.4 80 742-823 19-100 (118)
166 2fbn_A 70 kDa peptidylprolyl i 98.3 5.1E-06 1.7E-10 79.5 13.6 126 654-822 39-184 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.3 1.4E-05 4.9E-10 68.4 15.0 97 653-789 4-100 (118)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.3E-07 1.1E-11 100.6 5.3 139 742-885 249-405 (457)
169 3q49_B STIP1 homology and U bo 98.3 8.3E-06 2.8E-10 72.4 13.7 101 650-790 6-106 (137)
170 1elr_A TPR2A-domain of HOP; HO 98.3 4.5E-06 1.6E-10 73.2 11.7 80 742-823 19-107 (131)
171 1hxi_A PEX5, peroxisome target 98.3 5.2E-06 1.8E-10 71.8 11.6 98 655-795 19-117 (121)
172 2dba_A Smooth muscle cell asso 98.3 1.7E-05 5.7E-10 71.4 15.1 96 653-789 28-127 (148)
173 2xev_A YBGF; tetratricopeptide 98.3 1.7E-05 5.7E-10 69.5 14.5 92 733-824 8-105 (129)
174 2hr2_A Hypothetical protein; a 98.3 5.7E-06 1.9E-10 73.6 11.0 100 655-797 13-136 (159)
175 1dce_A Protein (RAB geranylger 98.3 3.1E-05 1.1E-09 86.7 19.6 183 667-883 43-244 (567)
176 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.1E-10 70.8 14.5 99 758-860 25-129 (148)
177 3ro3_A PINS homolog, G-protein 98.2 9.8E-06 3.4E-10 74.2 11.9 134 761-894 9-158 (164)
178 3ro3_A PINS homolog, G-protein 98.2 1.5E-05 5.1E-10 73.0 12.9 126 734-859 16-158 (164)
179 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4E-10 70.5 11.5 98 654-791 5-109 (131)
180 2hr2_A Hypothetical protein; a 98.2 1.2E-05 4.1E-10 71.5 11.0 56 734-789 18-85 (159)
181 3rkv_A Putative peptidylprolyl 98.2 1.1E-05 3.7E-10 74.2 11.4 99 761-861 11-128 (162)
182 3k9i_A BH0479 protein; putativ 98.1 2E-06 6.7E-11 74.1 5.3 82 741-824 4-90 (117)
183 3rkv_A Putative peptidylprolyl 98.1 1.8E-05 6.2E-10 72.7 11.9 54 742-797 78-131 (162)
184 1ihg_A Cyclophilin 40; ppiase 98.1 1E-05 3.6E-10 85.6 11.5 120 764-886 226-362 (370)
185 4b4t_Q 26S proteasome regulato 98.1 0.00013 4.3E-09 79.7 20.7 117 742-858 110-244 (434)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.1E-05 7E-10 86.3 13.7 126 654-822 269-413 (457)
187 4b4t_Q 26S proteasome regulato 98.1 0.00012 4.2E-09 79.8 20.0 154 740-893 68-244 (434)
188 1zu2_A Mitochondrial import re 98.1 6.4E-06 2.2E-10 73.0 7.7 91 739-833 14-127 (158)
189 3k9i_A BH0479 protein; putativ 98.1 8.6E-06 2.9E-10 70.0 8.4 88 665-791 2-91 (117)
190 2xev_A YBGF; tetratricopeptide 98.1 7.8E-05 2.7E-09 65.1 14.4 95 657-791 6-106 (129)
191 1ihg_A Cyclophilin 40; ppiase 98.0 2.8E-05 9.6E-10 82.2 12.8 26 656-681 226-251 (370)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 6E-06 2.1E-10 86.5 7.2 132 761-897 179-331 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.8E-10 84.5 9.0 48 742-789 245-292 (338)
194 1wao_1 Serine/threonine protei 98.0 1.1E-05 3.8E-10 88.7 9.4 118 660-819 13-134 (477)
195 1dce_A Protein (RAB geranylger 97.9 0.00029 9.8E-09 78.9 19.4 188 563-779 44-244 (567)
196 1klx_A Cysteine rich protein B 97.9 0.00026 8.8E-09 62.6 14.1 111 742-861 10-128 (138)
197 2kat_A Uncharacterized protein 97.8 7.6E-05 2.6E-09 63.7 9.2 78 745-824 3-82 (115)
198 3n71_A Histone lysine methyltr 97.8 0.00015 5.3E-09 78.9 13.2 126 770-895 318-465 (490)
199 2l6j_A TPR repeat-containing p 97.7 8.4E-05 2.9E-09 62.8 8.5 77 739-817 16-100 (111)
200 1zu2_A Mitochondrial import re 97.7 8E-05 2.7E-09 66.1 8.2 102 664-797 13-125 (158)
201 3n71_A Histone lysine methyltr 97.7 0.00022 7.4E-09 77.8 12.8 120 740-859 322-464 (490)
202 1klx_A Cysteine rich protein B 97.6 0.0013 4.3E-08 58.1 14.2 80 742-825 40-127 (138)
203 1na3_A Designed protein CTPR2; 97.6 0.00025 8.4E-09 57.2 8.9 78 761-842 9-89 (91)
204 2l6j_A TPR repeat-containing p 97.6 7.9E-05 2.7E-09 62.9 6.0 95 652-786 3-103 (111)
205 2kat_A Uncharacterized protein 97.5 0.00023 7.9E-09 60.6 8.2 80 670-789 2-81 (115)
206 3ma5_A Tetratricopeptide repea 97.5 0.00028 9.5E-09 58.2 7.7 64 758-823 4-69 (100)
207 1na3_A Designed protein CTPR2; 97.5 0.0011 3.8E-08 53.1 11.2 48 742-789 24-71 (91)
208 3ma5_A Tetratricopeptide repea 97.4 0.00033 1.1E-08 57.8 7.7 51 739-789 19-69 (100)
209 3u64_A Protein TP_0956; tetrat 97.4 0.0054 1.9E-07 59.8 16.5 105 741-855 177-294 (301)
210 3ly7_A Transcriptional activat 97.3 0.0011 3.8E-08 67.6 11.6 120 742-863 214-343 (372)
211 3u64_A Protein TP_0956; tetrat 97.2 0.024 8.2E-07 55.3 18.6 126 755-892 146-296 (301)
212 2kc7_A BFR218_protein; tetratr 97.2 0.00056 1.9E-08 56.2 6.1 82 733-822 6-88 (99)
213 3qww_A SET and MYND domain-con 97.0 0.0027 9.3E-08 67.9 10.7 87 773-859 310-411 (433)
214 1pc2_A Mitochondria fission pr 96.9 0.0039 1.3E-07 54.5 8.8 86 742-830 13-104 (152)
215 3bee_A Putative YFRE protein; 96.8 0.0062 2.1E-07 48.9 9.2 48 743-790 25-72 (93)
216 3ly7_A Transcriptional activat 96.8 0.0092 3.1E-07 61.0 12.4 138 755-896 188-341 (372)
217 3qww_A SET and MYND domain-con 96.7 0.0042 1.4E-07 66.4 9.6 83 741-823 312-410 (433)
218 3qwp_A SET and MYND domain-con 96.7 0.01 3.5E-07 63.6 12.5 92 768-859 294-400 (429)
219 2kc7_A BFR218_protein; tetratr 96.6 0.0022 7.7E-08 52.4 5.3 82 659-788 6-88 (99)
220 3bee_A Putative YFRE protein; 96.6 0.0073 2.5E-07 48.5 8.0 65 758-824 3-72 (93)
221 3mkq_B Coatomer subunit alpha; 96.4 0.075 2.6E-06 47.7 14.1 128 737-892 15-142 (177)
222 3qwp_A SET and MYND domain-con 96.4 0.01 3.5E-07 63.5 10.2 84 740-823 300-399 (429)
223 3mkq_A Coatomer beta'-subunit; 96.3 0.17 5.9E-06 59.8 21.5 63 622-702 633-695 (814)
224 1wy6_A Hypothetical protein ST 96.3 0.22 7.4E-06 41.7 14.8 139 737-897 17-157 (172)
225 1wy6_A Hypothetical protein ST 96.3 0.16 5.3E-06 42.5 13.9 52 742-793 106-157 (172)
226 1pc2_A Mitochondria fission pr 96.2 0.016 5.5E-07 50.7 8.3 85 776-862 13-103 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.0 0.074 2.5E-06 43.7 11.1 79 651-768 3-87 (104)
228 2v5f_A Prolyl 4-hydroxylase su 95.6 0.04 1.4E-06 45.3 8.2 64 731-796 9-79 (104)
229 4h7y_A Dual specificity protei 95.5 0.21 7.3E-06 42.9 12.0 107 758-866 10-130 (161)
230 3mkq_A Coatomer beta'-subunit; 95.5 0.61 2.1E-05 55.0 21.0 75 587-679 633-707 (814)
231 1nzn_A CGI-135 protein, fissio 95.4 0.08 2.7E-06 44.4 8.9 81 742-823 16-102 (126)
232 4ady_A RPN2, 26S proteasome re 94.8 7.8 0.00027 44.9 42.9 27 445-471 232-258 (963)
233 4h7y_A Dual specificity protei 94.8 0.29 9.9E-06 42.1 10.5 115 650-798 10-131 (161)
234 1nzn_A CGI-135 protein, fissio 94.4 0.15 5.2E-06 42.7 8.1 91 770-862 10-106 (126)
235 1qsa_A Protein (soluble lytic 94.4 4.6 0.00016 44.9 22.6 262 587-893 76-347 (618)
236 3mkq_B Coatomer subunit alpha; 94.1 2.6 9E-05 37.7 15.9 101 242-364 15-115 (177)
237 3lvg_A Clathrin heavy chain 1; 94.0 1.1E-05 3.9E-10 83.1 -21.2 265 161-463 53-324 (624)
238 3ffl_A Anaphase-promoting comp 93.7 0.19 6.4E-06 44.3 7.5 112 732-856 25-148 (167)
239 3lvg_A Clathrin heavy chain 1; 92.7 0.00025 8.7E-09 73.3 -13.8 264 583-885 54-324 (624)
240 1y8m_A FIS1; mitochondria, unk 91.8 1.5 5.3E-05 37.3 10.3 70 758-829 36-109 (144)
241 3o48_A Mitochondria fission 1 91.2 1.5 5.1E-05 36.9 9.5 48 742-789 58-106 (134)
242 3o48_A Mitochondria fission 1 91.2 1.4 4.8E-05 37.0 9.3 68 793-862 37-110 (134)
243 4ady_A RPN2, 26S proteasome re 91.0 28 0.00094 40.5 50.9 260 521-823 382-657 (963)
244 4gns_B Protein CSD3, chitin bi 91.0 0.95 3.3E-05 51.3 10.9 52 768-821 344-397 (754)
245 4gns_B Protein CSD3, chitin bi 90.7 1.1 3.9E-05 50.8 11.1 46 742-787 352-397 (754)
246 1y8m_A FIS1; mitochondria, unk 90.6 3.7 0.00013 35.0 11.4 70 793-862 36-109 (144)
247 3txn_A 26S proteasome regulato 90.0 5.5 0.00019 41.3 14.8 54 734-787 106-165 (394)
248 3ffl_A Anaphase-promoting comp 89.9 3.3 0.00011 36.4 11.0 118 764-894 23-151 (167)
249 3txn_A 26S proteasome regulato 89.4 21 0.0007 37.0 18.6 236 583-856 19-281 (394)
250 4b4t_P 26S proteasome regulato 89.2 17 0.00059 38.6 18.6 195 597-823 30-246 (445)
251 1zbp_A Hypothetical protein VP 88.8 12 0.00042 35.9 14.9 116 736-859 6-129 (273)
252 4b4t_P 26S proteasome regulato 88.8 27 0.00092 37.1 22.3 94 552-645 141-245 (445)
253 2wpv_A GET4, UPF0363 protein Y 86.1 29 0.00099 34.5 20.7 166 342-541 37-216 (312)
254 3lpz_A GET4 (YOR164C homolog); 85.6 31 0.0011 34.5 22.2 83 440-541 133-215 (336)
255 2ff4_A Probable regulatory pro 84.7 3.6 0.00012 43.0 10.0 57 742-798 186-247 (388)
256 4fhn_B Nucleoporin NUP120; pro 83.2 23 0.00078 43.1 17.6 129 306-436 902-1049(1139)
257 2ff4_A Probable regulatory pro 82.8 7.3 0.00025 40.7 11.4 72 586-658 174-250 (388)
258 4b4t_R RPN7, 26S proteasome re 82.1 8.2 0.00028 41.0 11.6 119 742-860 109-238 (429)
259 4fhn_B Nucleoporin NUP120; pro 82.1 21 0.00072 43.5 16.6 54 622-680 816-869 (1139)
260 1v54_E Cytochrome C oxidase po 79.5 7.3 0.00025 30.7 7.1 60 214-275 27-86 (109)
261 2wpv_A GET4, UPF0363 protein Y 79.1 53 0.0018 32.6 20.9 26 337-362 133-158 (312)
262 3lpz_A GET4 (YOR164C homolog); 78.9 56 0.0019 32.7 23.3 173 620-857 37-214 (336)
263 1v54_E Cytochrome C oxidase po 78.4 9.7 0.00033 30.1 7.5 46 636-681 28-73 (109)
264 2p58_C Putative type III secre 72.6 23 0.00078 27.9 8.1 79 211-298 21-99 (116)
265 1zbp_A Hypothetical protein VP 72.2 25 0.00085 33.8 10.3 53 628-681 7-59 (273)
266 4b4t_R RPN7, 26S proteasome re 70.8 25 0.00087 37.1 11.5 94 799-892 135-235 (429)
267 2y69_E Cytochrome C oxidase su 70.4 15 0.0005 30.8 7.1 62 213-276 69-130 (152)
268 2uwj_G Type III export protein 68.2 22 0.00075 27.9 7.1 79 211-298 20-98 (115)
269 2y69_E Cytochrome C oxidase su 67.7 43 0.0015 28.1 9.2 62 635-697 70-131 (152)
270 3esl_A Checkpoint serine/threo 66.0 38 0.0013 30.9 9.6 56 742-797 94-151 (202)
271 1qsa_A Protein (soluble lytic 62.5 1.9E+02 0.0065 32.0 35.3 74 449-528 78-151 (618)
272 1wdy_A 2-5A-dependent ribonucl 61.8 51 0.0017 31.9 11.3 19 386-404 192-210 (285)
273 2uwj_G Type III export protein 61.6 57 0.002 25.6 9.1 78 775-860 20-98 (115)
274 2p58_C Putative type III secre 61.1 59 0.002 25.6 9.8 78 775-860 21-99 (116)
275 1wdy_A 2-5A-dependent ribonucl 56.9 38 0.0013 32.8 9.3 21 421-441 192-212 (285)
276 4a1g_A Mitotic checkpoint seri 55.8 32 0.0011 29.8 7.0 53 745-797 83-137 (152)
277 1k1a_A B-cell lymphoma 3-encod 54.6 34 0.0012 32.2 8.2 19 314-332 17-35 (241)
278 3esl_A Checkpoint serine/threo 53.0 1.1E+02 0.0039 27.8 10.4 56 774-829 92-149 (202)
279 2wvi_A Mitotic checkpoint seri 52.1 39 0.0013 29.7 7.1 52 746-797 79-132 (164)
280 3eiq_C Programmed cell death p 49.5 2.1E+02 0.0071 29.0 13.0 27 234-260 56-82 (358)
281 1k1a_A B-cell lymphoma 3-encod 48.8 41 0.0014 31.6 7.7 24 277-300 15-38 (241)
282 3ltm_A Alpha-REP4; protein eng 48.2 1.6E+02 0.0055 26.7 19.2 17 337-353 32-48 (211)
283 3eu9_A Huntingtin-interacting 46.0 50 0.0017 30.9 7.8 15 453-467 217-231 (240)
284 3eiq_C Programmed cell death p 44.3 1.6E+02 0.0055 29.8 11.2 72 586-658 220-293 (358)
285 4aez_C MAD3, mitotic spindle c 41.9 47 0.0016 30.9 6.2 52 745-796 132-185 (223)
286 4b4t_S RPN3, 26S proteasome re 41.5 1.3E+02 0.0045 32.1 10.4 48 742-791 246-300 (523)
287 2r9g_A AAA ATPase, central reg 41.3 2E+02 0.007 26.0 10.0 37 665-702 26-62 (204)
288 3jxi_A Vanilloid receptor-rela 40.8 25 0.00086 33.8 4.8 26 277-302 11-36 (260)
289 3kea_A K1L; tropism, ANK repea 39.9 72 0.0025 31.1 8.1 19 345-363 165-183 (285)
290 3eu9_A Huntingtin-interacting 39.6 40 0.0014 31.6 6.0 20 415-434 214-233 (240)
291 2qx5_A Nucleoporin NIC96; mRNA 39.4 2.9E+02 0.0098 30.8 13.2 17 840-856 548-564 (661)
292 2d2s_A Exocyst complex compone 37.4 1.6E+02 0.0054 27.8 9.4 22 275-296 25-46 (235)
293 4b4t_S RPN3, 26S proteasome re 36.1 93 0.0032 33.3 8.2 62 799-860 235-300 (523)
294 2wvi_A Mitotic checkpoint seri 35.7 80 0.0027 27.7 6.5 54 812-865 77-131 (164)
295 4g8k_A 2-5A-dependent ribonucl 34.6 3E+02 0.01 27.2 12.0 19 167-185 27-45 (337)
296 3ctd_A Putative ATPase, AAA fa 34.4 2.7E+02 0.0092 25.5 9.7 45 658-702 37-84 (213)
297 4a1g_A Mitotic checkpoint seri 34.2 2.3E+02 0.0078 24.5 9.9 54 635-688 82-136 (152)
298 3ltm_A Alpha-REP4; protein eng 33.3 2.7E+02 0.0093 25.1 20.3 17 337-353 94-110 (211)
299 3kea_A K1L; tropism, ANK repea 33.0 1.1E+02 0.0036 29.9 8.0 16 417-432 167-182 (285)
300 2zu6_B Programmed cell death p 32.6 2.4E+02 0.0082 27.8 10.2 26 235-260 6-31 (307)
301 4g8k_A 2-5A-dependent ribonucl 32.6 2.4E+02 0.0081 28.0 10.9 52 201-256 26-80 (337)
302 2d2s_A Exocyst complex compone 32.0 1.4E+02 0.0047 28.2 8.0 88 169-259 25-118 (235)
303 4gq2_M Nucleoporin NUP120; bet 31.2 2.1E+02 0.0072 33.7 11.3 101 753-865 832-932 (950)
304 3mv2_A Coatomer subunit alpha; 31.1 4E+02 0.014 26.3 18.5 96 659-756 34-143 (325)
305 3utm_A Tankyrase-1; tankyrase, 31.0 3.6E+02 0.012 26.5 12.1 75 429-511 228-306 (351)
306 2zu6_B Programmed cell death p 29.5 2.8E+02 0.0096 27.3 10.1 23 552-574 7-29 (307)
307 4aez_C MAD3, mitotic spindle c 29.3 1.3E+02 0.0045 27.9 7.0 54 811-864 130-184 (223)
308 1wgl_A TOLL-interacting protei 29.3 91 0.0031 21.8 4.6 36 62-97 15-50 (59)
309 1n11_A Ankyrin; clathrin, BAND 28.5 2.5E+02 0.0085 29.2 10.6 18 239-256 117-134 (437)
310 3hra_A Ankyrin repeat family p 28.4 93 0.0032 28.0 6.3 14 243-256 13-26 (201)
311 3ltj_A Alpharep-4; protein eng 28.2 3.2E+02 0.011 24.3 20.2 16 337-352 120-135 (201)
312 2nsz_A Programmed cell death p 28.2 1.3E+02 0.0045 25.1 6.4 24 236-259 11-34 (129)
313 3aji_A 26S proteasome non-ATPa 27.3 1.6E+02 0.0054 27.1 7.9 17 240-256 11-27 (231)
314 3bge_A Predicted ATPase; struc 27.3 3.5E+02 0.012 24.5 10.2 38 665-702 19-56 (201)
315 3pvs_A Replication-associated 26.2 5.8E+02 0.02 26.7 13.6 38 665-702 267-304 (447)
316 3mkr_B Coatomer subunit alpha; 25.3 5E+02 0.017 25.6 15.9 164 659-824 22-227 (320)
317 3hra_A Ankyrin repeat family p 25.3 1.3E+02 0.0043 27.0 6.6 15 278-292 12-26 (201)
318 3t8k_A Uncharacterized protein 24.9 1.3E+02 0.0045 26.9 6.4 27 276-302 43-69 (186)
319 3aji_A 26S proteasome non-ATPa 24.7 1.7E+02 0.0059 26.8 7.6 18 204-221 10-27 (231)
320 2ion_A PDCD4, programmed cell 23.8 3.5E+02 0.012 23.3 8.6 21 274-294 15-35 (152)
321 3t8k_A Uncharacterized protein 23.0 2.7E+02 0.0091 24.8 8.2 27 345-371 42-68 (186)
322 3ltj_A Alpharep-4; protein eng 22.7 4E+02 0.014 23.6 20.0 123 230-366 57-179 (201)
323 2ion_A PDCD4, programmed cell 22.4 1.1E+02 0.0039 26.4 5.1 64 235-300 12-77 (152)
324 3jxi_A Vanilloid receptor-rela 21.7 32 0.0011 33.0 1.6 24 208-231 13-36 (260)
325 2ijq_A Hypothetical protein; s 21.3 2.5E+02 0.0085 24.5 6.9 56 734-789 39-103 (161)
326 1ug3_A EIF4GI, eukaryotic prot 21.3 2.5E+02 0.0087 28.1 8.3 23 272-294 15-37 (339)
327 1bpo_A Protein (clathrin); cla 21.1 5.8E+02 0.02 26.8 10.5 44 176-222 343-386 (494)
328 1ug3_A EIF4GI, eukaryotic prot 20.9 3E+02 0.01 27.6 8.7 26 235-260 14-39 (339)
329 1oyz_A Hypothetical protein YI 20.4 5.5E+02 0.019 24.3 25.5 16 372-387 141-156 (280)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-40 Score=383.92 Aligned_cols=502 Identities=10% Similarity=-0.047 Sum_probs=374.1
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 230 LDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
+++..|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|+.+|+.+... .++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 34555555555555555555555555555422 344455555555555555555555555554321 3444555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 389 (902)
+.+|++.|++++|.++|+++.. +.. ...++.+.++ ...|..++..+|+.++.+|.+.|++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 5555555555555555543111 100 0000000000 0123345678888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048778 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV--HL-LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIF 466 (902)
Q Consensus 390 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 466 (902)
++|.++|++|.+.+. .+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999988887642 24445555554443332222211 11 444444444455667777788899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 467 NSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLK 546 (902)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (902)
+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+. .+..++..++.+|.+.|+.++|..+++++.+. .+.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 998875 57899999999999999999999999999988753 37788999999999999999999999999864 346
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998743 3468899999999999999999999999999874 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHh
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN----GCQLN--SNVYSALLAGLVS 700 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~l~~~~~~ 700 (902)
+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+. +..|+ ..+|..++..|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999764 567999999999999999999999999999875 66787 7899999999999
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.| ++++|.+.++++++.+|.+..+|..++.+|...|++++|
T Consensus 529 ~g---------------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 529 LK---------------------------------------MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hc---------------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHhH--HHHHHHH
Q 048778 781 DRIMKDIMKSGVFPAKAI--TSIIGCY 805 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~--~~l~~~~ 805 (902)
.+.|+++++ ..|+... ..++.+|
T Consensus 570 ~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 570 ITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 999999998 4565544 5555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-39 Score=372.76 Aligned_cols=524 Identities=11% Similarity=-0.046 Sum_probs=370.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHH
Q 048778 172 LAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEA 251 (902)
Q Consensus 172 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 251 (902)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 556677777777766543 467889999999999999999999999999854 67889999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048778 252 FKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVV 331 (902)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 331 (902)
..+|+.+... +++..+|+.++.+|++.|++++|+++|+++... .. ...++.+.++ ..
T Consensus 137 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 137 KCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C-----------CC
T ss_pred HHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc-----------cc
Confidence 9999998643 689999999999999999999999999853221 10 0001111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH--HH-HHHHHhCCCCCCH
Q 048778 332 KRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAF--EL-LALMEKRTCKPNI 408 (902)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~ 408 (902)
.+.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234445666777777777777777777777777664322 3444444444333222221111 11 3444444444445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048778 409 RTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGL 488 (902)
Q Consensus 409 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (902)
.+|+.++..|++.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 55666667777777777777777776654 3667777777777777777777777777777654 34566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 048778 489 CKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 489 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (902)
.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776543 3467777777777777777777777777776642 245667778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 048778 569 AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL- 647 (902)
Q Consensus 569 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 647 (902)
++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 8888877643 3467788888888888888888888888888764 557788888888888888888888888888764
Q ss_pred ---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCC
Q 048778 648 ---GVSPN--HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSR 722 (902)
Q Consensus 648 ---g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (902)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+...|.+.|
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-------------------- 564 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-------------------- 564 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT--------------------
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC--------------------
Confidence 55677 7788899999999999999999999888753 447788888888888888
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
++++|.+.|+++++.+|.++.++..|+..|.
T Consensus 565 -------------------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 565 -------------------IPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 8999999999999988888888888887664
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-29 Score=278.34 Aligned_cols=204 Identities=14% Similarity=0.175 Sum_probs=133.9
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCC---------hh
Q 048778 216 GEMFFCRVLKHGFCLDT-HICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGR---------LD 285 (902)
Q Consensus 216 a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 285 (902)
+..+..++.+.+....+ .+++.+|++|+|.|++++|+++|++|.+. |+.||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544333 24566666677777777777777777665 666777777777766665543 45
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 365 (902)
+|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 366 QDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 366 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777776664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.7e-29 Score=276.30 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=153.0
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccC---------CHHHHH
Q 048778 183 AVFVKLIADGFVLSA-IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGN---------DLKEAF 252 (902)
Q Consensus 183 ~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~ 252 (902)
.+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||.++||+||.+|++.+ .++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444443332 2355555555555555555555555555555555555555555555443 468888
Q ss_pred HHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048778 253 KVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVK 332 (902)
Q Consensus 253 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 332 (902)
++|++|.+. |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999887 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048778 333 RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ 386 (902)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 386 (902)
|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998888763
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.3e-26 Score=247.93 Aligned_cols=378 Identities=13% Similarity=0.050 Sum_probs=270.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529 (902)
Q Consensus 450 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 529 (902)
...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666543 3345555566666667777777777776666653 34666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 530 GEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776642 2334567777777777777777777777777643 223455666777777778888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 048778 610 KLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NS 688 (902)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~ 688 (902)
.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+...|..+...+...|++++|...++++.+. .| +.
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 7753 4456778888888888888888888888887754 445677778888888888888888888887763 44 46
Q ss_pred HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048778 689 NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV 768 (902)
Q Consensus 689 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 768 (902)
.++..+...+...| ++++|.+.|+++++.+|.++.+|..++
T Consensus 238 ~~~~~l~~~~~~~g---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 238 VVHGNLACVYYEQG---------------------------------------LIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 67777777777777 888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~ 845 (902)
..+.+.|++++|++.|+++++. .|+... ..++.++...|++++|...++++.+. .| +...+..++.+|.+.|+
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCC
Confidence 8888888888888888888874 344333 77888888888888888888888764 34 35777788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCC
Q 048778 846 NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGD 879 (902)
Q Consensus 846 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 879 (902)
+++|+..++++++..+. ....|..++..+.+.|
T Consensus 355 ~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 355 LQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 88888888888765432 3445666666555544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1e-25 Score=245.62 Aligned_cols=377 Identities=15% Similarity=0.081 Sum_probs=249.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
.+.+.|++++|...+.++.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555444321 223334444445555555555555555555432 3455556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK 576 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (902)
|...|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666555542 2234455566666666666666666666665532 12334455556666666777777777776665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 32 2246677777777777788888888888777753 4456677777788888888888888888777653 3457777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..++.++.+.|++++|.+.++++++.. +.+..+|..+...+.+.|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g---------------------------------- 285 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG---------------------------------- 285 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS----------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC----------------------------------
Confidence 788888888888888888888887631 234667777777777777
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++++|.+.|+++++..|.+..++..++..+.+.|++++|++.++++++ ..|+... ..++.+|.+.|++++|
T Consensus 286 -----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 286 -----SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred -----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888888888877 4455443 7788888888888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 048778 815 LEFMNLILESGFVPS-FESHCTVIQGLQSEG 844 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g 844 (902)
...++++++. .|+ ...|..++..+...|
T Consensus 359 ~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 8888888764 454 477777777776655
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-23 Score=236.26 Aligned_cols=449 Identities=11% Similarity=-0.014 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048778 338 AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEG 417 (902)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 417 (902)
...+......+.+.|++++|...|+++.+.+ |+...|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4455666677777777777777777777654 567777777777777777777777777776653 2345666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 048778 418 LCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELA 497 (902)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (902)
+...|++++|...|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-.....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 153 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD-------- 153 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh--------
Confidence 7777777777777777766543 3444444444444443333333333333333222222221111100000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHH
Q 048778 498 NGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCK---ENKLKEEYAMFGKI 574 (902)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 574 (902)
.....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 154 --------KQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred --------hccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001112222111111100000000 000001123334444444443 78888888888888
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 575 LK-----FGL--------VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLL 641 (902)
Q Consensus 575 ~~-----~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (902)
.+ ... +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 211 1235677888889999999999999999998864 44788899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 642 FKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 642 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~------------------- 352 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYREN------------------- 352 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTT-------------------
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcC-------------------
Confidence 9999764 5567889999999999999999999999998752 335677888888888877
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----- 796 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 796 (902)
++++|...++++++..|.+..++..++..|...|++++|+..++++.+.. |+.
T Consensus 353 --------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 410 (514)
T 2gw1_A 353 --------------------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKLDGIYV 410 (514)
T ss_dssp --------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSSSCSS
T ss_pred --------------------CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hccchHHH
Confidence 99999999999999999999999999999999999999999999998743 333
Q ss_pred ---hHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 797 ---AITSIIGCYCK---ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 797 ---~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
....++.+|.. .|++++|...++++.+.. ..+...+..++.++.+.|++++|...++++++..+.
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 22889999999 999999999999999753 235688889999999999999999999999887643
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.1e-22 Score=230.99 Aligned_cols=455 Identities=10% Similarity=-0.004 Sum_probs=302.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 268 SVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDR 347 (902)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 347 (902)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|.+.++++.+.++ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3455666666777777777777777776653 5666666666777777777777777776665532 245666666666
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 348 LCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKA 427 (902)
Q Consensus 348 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 427 (902)
|.+.|++++|...|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7777777777777766666542 23334444444444433333333334333333222222221111000000
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHH
Q 048778 428 VHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK---LGKPELANGFFGLM 504 (902)
Q Consensus 428 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 504 (902)
....|+...... +.......... ....-+.+...+......+.. .|++++|...++++
T Consensus 155 ---------~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001122111111 11000000000 000001224444444444444 78888888888887
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 048778 505 VK-----KGI--------SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMF 571 (902)
Q Consensus 505 ~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (902)
.+ ..- +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 123556777888889999999999999998876433 778888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048778 572 GKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSP 651 (902)
Q Consensus 572 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 651 (902)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9988753 3367788899999999999999999999998864 5567788999999999999999999999998753 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCcCCccccccccCCCCCCCCC
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVS---SNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
+...+..++..+...|++++|...++++.+... .++ ...+..+...+.. .|
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------- 429 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE--------------------- 429 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT---------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC---------------------
Confidence 678899999999999999999999999986311 111 3377778888877 77
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|.+.++++++..|.+..++..++..|...|++++|.+.|+++.+. .|+...
T Consensus 430 ------------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 430 ------------------NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp ------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred ------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHH
Confidence 9999999999999999999999999999999999999999999999984 455443
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=6.8e-18 Score=195.70 Aligned_cols=722 Identities=11% Similarity=0.108 Sum_probs=437.5
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhhHHHHHHHHHhhhhCC------------C
Q 048778 91 RFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDG------------F 158 (902)
Q Consensus 91 ~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------------~ 158 (902)
-+|.|+...-+++.+++.....+.+.++.|.+.+++.+... +.|.++ +++..++.+.+-.+ +
T Consensus 710 gl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~re--s~~y~~----e~vk~flk~~kl~d~~pli~vCdr~~~ 783 (1630)
T 1xi4_A 710 GLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRE--SNCYDP----ERVKNFLKEAKLTDQLPLIIVCDRFDF 783 (1630)
T ss_pred hHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhcc--CCCCCH----HHHHHHHhhCCCCCCCCceeecccccc
Confidence 34567777777889999999999999999999998876543 122221 12333333332222 1
Q ss_pred CCCHhhH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCChHHHHHHHH
Q 048778 159 KLNYPCY------SCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAI-----------DYRSVINALCKSGLVRAGEMFFC 221 (902)
Q Consensus 159 ~~~~~~~------~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-----------~~~~ll~~~~~~~~~~~a~~~~~ 221 (902)
..+...| ...|..|+..-++..+-.+...+.+.++..|.. ...-++..+-+.+++.--..+++
T Consensus 784 v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE 863 (1630)
T 1xi4_A 784 VHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLE 863 (1630)
T ss_pred HHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 223445554444444444444444333322211 12334444445566666666777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHhccCC-HHHHH--------HHHHHhhhcCCCCCCHh---------------------hH
Q 048778 222 RVLKHGFCLDTHICTSLVLGHCRGND-LKEAF--------KVFDVMSKEASYRPNSV---------------------TF 271 (902)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~--------~~~~~m~~~~~~~~~~~---------------------~~ 271 (902)
.-+..| ..++.++|+|...|...+. .+.-+ .+.-+..++ -.|... .|
T Consensus 864 ~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~--rDp~la~iay~~g~~d~eli~vt~~n~l~ 940 (1630)
T 1xi4_A 864 ARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK--RDPHLACVAYERGQCDLELINVCNENSLF 940 (1630)
T ss_pred HHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh--cCcchHHHHhcccCCcHHHHHHHhcchhH
Confidence 777777 6788899999999886553 22210 011111110 012110 12
Q ss_pred HHHHHHHHhcCChhHHHH-----------HHHHHHHCCC--CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC
Q 048778 272 TTLIHGLCEVGRLDEAFS-----------LKDEMCEKGW--QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRC--KP 336 (902)
Q Consensus 272 ~~li~~~~~~g~~~~A~~-----------~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~ 336 (902)
....+-+.+..+.+-=-. +.+......+ .-++.--...+.+|...|.+.+|++++++..-.+- .-
T Consensus 941 k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~ 1020 (1630)
T 1xi4_A 941 KSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE 1020 (1630)
T ss_pred HHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccc
Confidence 222222222222221111 1111111000 11233335566778888888999998888874321 12
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
+...-+.++.+..+. +..+..+..++.-.. + ...+...+...|.+++|..+|++... .....+.++.
T Consensus 1021 n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie 1087 (1630)
T 1xi4_A 1021 HRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE 1087 (1630)
T ss_pred cHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 445666677776666 556666666555421 2 33466777889999999999998631 2222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++
T Consensus 1088 ---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1088 ---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred ---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 678899999988865 45778999999999999999999999664 478889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK 576 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (902)
|.+++....+.. +++...+.++.+|++.+++++...+ .+ .++...+..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999887764 3444444689999999998864433 22 256677778999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
..|..+..+|.+.|++++|++.+++. .+..+|..+..+|...|++..|...... +..+...+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 37999999999999999999999987 3668999999999999999999886653 34567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--CcCCccccccccCCCCCCCCCc------CCc
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSN--KASGVLSISTSCHSDAGSSRLE------HDD 727 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~ 727 (902)
..++..|.+.|.+++|+.+++..+. +.+ ....|.-|...+.+.. +..+.+..+..- .+++ ...
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~r------ini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR------VNIPKVLRAAEQA 1355 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh------cccchHhHHHHHH
Confidence 8999999999999999999988874 444 4567767777776655 111111111110 0111 122
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhcC---------------CHHHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESC------------GGSTTDFYNFLVVELCRAG---------------RIVEA 780 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g---------------~~~~A 780 (902)
..|...+..|.+.|+++.|....-+-... .+.|+..|...+..|.... +++.+
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~ 1435 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 1435 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHH
Confidence 34555566666677777776322211111 2556777777777777666 56666
Q ss_pred HHHHHHHHHc--------CC--CchHhH-HHHHHHHHccCChHHHHHHHHHHHH-------cCCC-CCHHHHHHHH-HHH
Q 048778 781 DRIMKDIMKS--------GV--FPAKAI-TSIIGCYCKERKYDDCLEFMNLILE-------SGFV-PSFESHCTVI-QGL 840 (902)
Q Consensus 781 ~~~~~~~~~~--------~~--~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-p~~~~~~~l~-~~l 840 (902)
..+|.+.-.. .+ ..+... ..+.+.|....+++.-.+..+.--. ..++ -+..-+..++ .+|
T Consensus 1436 V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly 1515 (1630)
T 1xi4_A 1436 VNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 1515 (1630)
T ss_pred HHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6655521000 00 011111 4444455544443321111111000 0000 0111122233 345
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.+.|+|.+|.+++++. + .|...+....+.|+.+.+.+++.-....|
T Consensus 1516 ~~n~~~~~ai~l~k~d---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~ 1561 (1630)
T 1xi4_A 1516 KGNNRWKQSVELCKKD---S------LYKDAMQYASESKDTELAEELLQWFLQEE 1561 (1630)
T ss_pred HhcCcHHHHHHHHHhc---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5558888888888772 1 34455667777788877777777665553
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.6e-21 Score=217.11 Aligned_cols=320 Identities=13% Similarity=0.049 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 407 NIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIID 486 (902)
Q Consensus 407 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (902)
+...+..+...+.+.|++++|..+|+++.+... .+..++..+...+...|++++|...|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 344555555555555556556555555554321 344555555555555555555555555555543 234455555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048778 487 GLCKLGKPELANGFFGLMVKKGISPDE---ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENK 563 (902)
Q Consensus 487 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (902)
.|.+.|++++|...|+++.+... .+. ..+..++..+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 55555555555555555554421 122 3333333221100 11122344666677
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 564 LKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
+++|...|+++.+.. +.+...+..++.+|.+.|++++|++.|+++.+.. +.+..+|..++.+|...|++++|+..+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776542 2356667777777777777777777777776643 45566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcCC
Q 048778 644 MFDLGVSPNHITYSIL------------VRAHASTGRLDHAFKIVSFMVANGCQLN-----SNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 644 m~~~g~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~l~~~~~~~~~~~~ 706 (902)
+.... +.+...+..+ +..+.+.|++++|...++++++. .|+ ...+..+...+.+.|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g---- 309 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDE---- 309 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTT----
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCC----
Confidence 76542 3334444443 67777778888888888887763 343 335666666666666
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|...++++++..|.+..+|..++.+|...|++++|+..+++
T Consensus 310 -----------------------------------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 310 -----------------------------------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888888877777788888888888888888888888888
Q ss_pred HHHcCCCchHhH
Q 048778 787 IMKSGVFPAKAI 798 (902)
Q Consensus 787 ~~~~~~~p~~~~ 798 (902)
+++ ..|+...
T Consensus 355 al~--~~p~~~~ 364 (450)
T 2y4t_A 355 AQE--HNENDQQ 364 (450)
T ss_dssp HHT--TSSSCHH
T ss_pred HHH--hCcchHH
Confidence 877 4455443
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=3e-17 Score=190.34 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhh---------HHHHHHHHHhhhh
Q 048778 85 NTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDD---------ILKLIVALDGLSK 155 (902)
Q Consensus 85 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~a~~~~~~~~~ 155 (902)
+|+.|..|-..+.+..+ .......++..+...+.+.++-.++-..++......+. +.-|-++=+.+..
T Consensus 525 ~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~ 601 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILG 601 (1630)
T ss_pred ChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHh
Confidence 38888888887766532 34456778888999999999888887777654221110 1112233344444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 156 DGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLI 189 (902)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 189 (902)
.+.. +..-|..+...+-++|.++.|++.|..+.
T Consensus 602 ~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~ 634 (1630)
T 1xi4_A 602 NQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLY 634 (1630)
T ss_pred cCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHH
Confidence 4433 66677888889999999999999988653
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.4e-21 Score=212.34 Aligned_cols=312 Identities=16% Similarity=0.103 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFL 555 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (902)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345566666666666666666666666666542 2356666666666666666666666666666542 23355556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 556 DVLCKENKLKEEYAMFGKILKFGLVPS-V---VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
..|.+.|++++|...|+++.+. .|+ . ..+..++..+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 6666666666666666666553 232 2 344444332000 0011112234445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccc
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSIS 711 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 711 (902)
|++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.++++.+. .+.+..++..++..+...|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--------- 225 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLG--------- 225 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTT---------
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC---------
Confidence 55555555555554432 334444555555555555555555555555442 1223444445555554444
Q ss_pred cccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHH
Q 048778 712 TSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVELCRAGRIVE 779 (902)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~ 779 (902)
++++|...|+++++..|.+...+..+ +..+...|++++
T Consensus 226 ------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 226 ------------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------------------------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555545544444443 555555555555
Q ss_pred HHHHHHHHHHcCCCchH-----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAK-----AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNL 852 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~-----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~ 852 (902)
|+..|+++++.. |+. .. ..++.++.+.|++++|+..++++.+. .| +...|..++.++...|++++|+..
T Consensus 276 A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 276 ATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555555555522 221 11 44455555555555555555555543 23 345555555555555555555555
Q ss_pred HHHHHhC
Q 048778 853 VSDLFRY 859 (902)
Q Consensus 853 ~~~~~~~ 859 (902)
++++++.
T Consensus 352 ~~~al~~ 358 (450)
T 2y4t_A 352 YETAQEH 358 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 5555443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.1e-21 Score=221.72 Aligned_cols=431 Identities=10% Similarity=0.001 Sum_probs=325.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 372 GVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVD 451 (902)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 451 (902)
....|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++.+.|++++|...++++.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34667888889999999999999999988764 34778888999999999999999999999988643 46778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh
Q 048778 452 GFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK------GISPDEATITALADGHCK 525 (902)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~ 525 (902)
.+...|++++|...|+.+.. .|+ .....+..+...+....|...++.+... ...|+.. .+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHH
Confidence 99999999999999964432 222 2222344555666677888888887653 1233333 3344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCC--------HHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPH-VLNSFLDVLCKE--------NKLKEEYAMFGKILKFGLVPS--------VVTYTI 588 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 588 (902)
..+.+.+...+...... .+... ....+...+... |++++|..+++++.+.. |+ ..++..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666655444333221 12111 233333333222 47889999999998743 43 235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 778888999999999999999986 5668889999999999999999999999998764 5578899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++|...++++.+.. +.+...+..+...+...| ++++|..
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~ 365 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG---------------------------------------KFTESEA 365 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT---------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------------------------------------CHHHHHH
Confidence 999999999998742 335678888888888888 9999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--------HHHHHHHHcc----------CC
Q 048778 749 LRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--------TSIIGCYCKE----------RK 810 (902)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~l~~~~~~~----------g~ 810 (902)
.++++++..|.+...+..++..+...|++++|+..|+++++.. |+... ..++.+|... |+
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999999999999999999999999999999999999998743 33221 3446778888 99
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
+++|...++++.+.. ..+...+..++.+|.+.|++++|+..++++++.....
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999752 2356888999999999999999999999998876543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.2e-20 Score=215.46 Aligned_cols=446 Identities=12% Similarity=0.025 Sum_probs=273.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRL 348 (902)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 348 (902)
..|..+...+.+.|++++|++.|+++.+... .+..++..+..++.+.|++++|++.++++.+.+. .+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 4455555566666666666666666555421 2444555555555555555555555555554432 2444555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 349 CREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV 428 (902)
Q Consensus 349 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 428 (902)
...|++++|...|+.+ .. .|+ .....+..+...+...+|...++.+.... |
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~---------------------- 154 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKD--E---------------------- 154 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhC--c----------------------
Confidence 5555555555555422 11 111 11112223333333444444444443320 0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH--------HhcCChhHHHH
Q 048778 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF-TFTSIIDGL--------CKLGKPELANG 499 (902)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~--------~~~g~~~~A~~ 499 (902)
+..+........+..+....+.+.+...+...... .+... ....+...+ ...|++++|..
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 155 ---------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ---------cccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00001111122223333344444433333222211 11111 111111111 11246677777
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048778 500 FFGLMVKKGISPD-------EATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFG 572 (902)
Q Consensus 500 ~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (902)
+++++.+.... + ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++
T Consensus 224 ~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777765322 2 2245566677788888888988888888753 447778888888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048778 573 KILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN 652 (902)
Q Consensus 573 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 652 (902)
++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 888753 3367889999999999999999999999998864 4456788999999999999999999999998764 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCc
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGC-----QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDD 727 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (902)
...+..+...+...|++++|...++++.+... ......+..+...+...+.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------ 433 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS------------------------ 433 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT------------------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh------------------------
Confidence 77899999999999999999999999886321 0111222233334444400
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
....+...|++++|...|+++++.+|.+..++..++..|...|++++|.+.|+++++..
T Consensus 434 -----~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 434 -----QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp -----C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 00001111499999999999999999999999999999999999999999999999854
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.8e-18 Score=184.35 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048778 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVL 558 (902)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (902)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~------------ 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MD------------ 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC------------
Confidence 344445555555555555555555555442 2234445555555555555555555555544431 12
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHH------------H
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCP---PNVHTYT------------V 623 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~------------~ 623 (902)
+...|..+...+...|++++|...|+++.+.. + .+...+. .
T Consensus 70 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 70 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555444431 1 1222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~- 202 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLG- 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-
Confidence 3567788888888888888888754 556788888888888889999999888888864 2346677777888887777
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVEL 771 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~ 771 (902)
++++|.+.++++++..|.+...+..+ +..+
T Consensus 203 --------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 203 --------------------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999888888877766533 7779
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 048778 772 CRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRN 846 (902)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~ 846 (902)
...|++++|+..++++.+..+...... ..++.+|...|++++|...++++.+. .| +...+..++.++...|++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999998543322211 45788999999999999999999975 45 578899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHH
Q 048778 847 KQAKNLVSDLFRYNGIEEKAAVLPYIEF 874 (902)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 874 (902)
++|...++++++..+. +...+..+..+
T Consensus 323 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 349 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNEN-DQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 9999999999877533 23344444433
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.4e-18 Score=182.09 Aligned_cols=198 Identities=15% Similarity=0.051 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 446 YNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3334444444445555555444444432 2234444444455555555555555555544432 1134444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CChhhHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDL--KTPHVLN------------SFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVD 591 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (902)
.|++++|...++++.+.... .+...+. .+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55555555555555442110 0111111 22345555556666666665555432 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 647 (902)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666666666666555542 344555555555555666666666666555543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=2.8e-16 Score=176.30 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=122.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 048778 393 FELLALMEKRTCKPNIRTYNELMEGLCR----MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR----EGQLDIALK 464 (902)
Q Consensus 393 ~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~ 464 (902)
++.+....+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444432 44445555555554 555555555555555532 33444445555555 555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCK----LGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIF 536 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 536 (902)
.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555555443 34444445555544 445555555555555443 34444444444444 44455555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 048778 537 ERMVQNTDLKTPHVLNSFLDVLCK----ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR----AGNIALAMSMIEV 608 (902)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 608 (902)
++..+. .++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++
T Consensus 175 ~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 233444444444444 444555555554444432 33344444444443 4444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048778 609 MKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-----GRLDHAFKIVSFM 679 (902)
Q Consensus 609 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m 679 (902)
..+.| +...+..+...|.. .++.++|+.+|++..+.| +...+..+...|... +++++|+.++++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 44432 23333334444443 444444444444444332 233334444444443 4444444444444
Q ss_pred HH
Q 048778 680 VA 681 (902)
Q Consensus 680 ~~ 681 (902)
.+
T Consensus 323 ~~ 324 (490)
T 2xm6_A 323 AE 324 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=4.3e-16 Score=174.73 Aligned_cols=382 Identities=12% Similarity=0.028 Sum_probs=278.6
Q ss_pred CHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCH
Q 048778 337 NAHTYTVLIDRLCR----EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCK----QGRIIAAFELLALMEKRTCKPNI 408 (902)
Q Consensus 337 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 408 (902)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55556666666666 667777777777776653 45566666666666 677777777777776654 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 048778 409 RTYNELMEGLCR----MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR----EGQLDIALKIFNSMSIFGLVPDGFT 480 (902)
Q Consensus 409 ~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 480 (902)
..+..|...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555566666666 667777777777777654 45566666666665 677888888888877754 6677
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048778 481 FTSIIDGLCK----LGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIFERMVQNTDLKTPHVLN 552 (902)
Q Consensus 481 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (902)
+..+...|.. .++.++|...|++..+.| +...+..+...|.. .++.++|..+|++..+. .++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHH
Confidence 7777777776 778888888888877764 56667777777775 77888888888888775 3455666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 553 SFLDVLCK----ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRA-----GNIALAMSMIEVMKLAGCPPNVHTYTV 623 (902)
Q Consensus 553 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 623 (902)
.+...|.. .++.++|...|++..+.| +...+..+...|... +++++|+..|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67777776 788888998888887753 566777778888877 89999999999998875 5567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 624 IINGLCQRG---RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 624 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...|...| ++++|+.+|++..+.| +...+..+...|.. .+++++|.+++++..+.| +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 787787766 7889999999998864 67788888888888 889999999999998864 4667777777
Q ss_pred HHHh----cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 048778 697 GLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG---STTDFYNFLVV 769 (902)
Q Consensus 697 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~ 769 (902)
.|.. .+ +.++|...|+++.+.+| .++.+...|+.
T Consensus 408 ~y~~g~g~~~---------------------------------------d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 408 IYYYGLGVER---------------------------------------DYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHTSSSCC---------------------------------------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHcCCCCCC---------------------------------------CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 7766 34 99999999999998883 36777777766
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~ 789 (902)
.+.. +.+.|.++..+..+
T Consensus 449 ~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 449 LTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp SCHH--HHHHHHHHHHHHHH
T ss_pred cCHh--HHHHHHHHHHHHHH
Confidence 5443 34455544444444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=6e-18 Score=179.41 Aligned_cols=293 Identities=11% Similarity=-0.017 Sum_probs=235.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
..++..+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3556677778888888899999999998888753 2345566667788889999999999999988864 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 625 INGLCQRG-RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 625 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
...+...| ++++|...++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~- 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN- 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh-
Confidence 99999999 8999999999998764 4567788899999999999999999999998752 334566777888888888
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRI 783 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 783 (902)
++++|.+.++++++..|.+..++..++..+...|++++|+..
T Consensus 174 --------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 174 --------------------------------------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-------chH-hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 784 MKDIMKSGVF-------PAK-AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 784 ~~~~~~~~~~-------p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
++++.+.... |+. .. ..++.+|...|++++|...++++.+.. ..+...+..++.++.+.|++++|...++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999874211 222 23 889999999999999999999998753 2356888899999999999999999999
Q ss_pred HHHhCCCCCcchhHHHHHHHH-hcCCcHh
Q 048778 855 DLFRYNGIEEKAAVLPYIEFL-LTGDELG 882 (902)
Q Consensus 855 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 882 (902)
++++..+. +...+..+..++ ...|+.+
T Consensus 295 ~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 98666532 455666777766 4556653
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.8e-16 Score=178.23 Aligned_cols=419 Identities=12% Similarity=0.043 Sum_probs=294.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 406 PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSII 485 (902)
Q Consensus 406 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (902)
-|...|..++. +.+.|++++|..+++++++.- +.+...|..++..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 36778888887 477899999999999998753 346677888888888999999999999999876 36777777776
Q ss_pred HHH-HhcCChhHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChh
Q 048778 486 DGL-CKLGKPELANG----FFGLMVKK-GIS-PDEATITALADGHCK---------NGKTGEALMIFERMVQNTDLKTPH 549 (902)
Q Consensus 486 ~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 549 (902)
... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777665 66665542 433 356677777766544 577888888888887731111112
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHCC---CCCC---
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM------KLAG---CPPN--- 617 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~---~~p~--- 617 (902)
.|..........|. .+...++. .+.+++..|..+++++ .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22222111100110 01111111 1234566666666652 2221 2444
Q ss_pred -----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------
Q 048778 618 -----VHTYTVIINGLCQR----GRF----KEAEMLLFKMFDLGVSPNHITYSILVRAHAS-------TGRLD------- 670 (902)
Q Consensus 618 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------~g~~~------- 670 (902)
...|...+...... ++. ++|..+|++++... +.+...|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 24555555433222 222 47788999988753 5578889888888876 79987
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
+|..++++.++. +.| +...|..++..+.+.| ++++|..+
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g---------------------------------------~~~~A~~~ 343 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRM---------------------------------------KYEKVHSI 343 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcC---------------------------------------CHHHHHHH
Confidence 999999999863 344 6788888888888888 99999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHH-HHHccCChHHHHHHHHHHHHcC
Q 048778 750 RDRIESCGGSTT-DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIG-CYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 750 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~-~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
|+++++..|.++ ..|..++..+.+.|++++|.++|+++++.. |.... ...+. .+...|++++|..+|+++++.
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~- 420 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK- 420 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Confidence 999999888775 589999999999999999999999999843 33222 22222 234689999999999999975
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.| +...|..++..+.+.|+.++|..++++++... ..|+ ...|..++......|+.+.+.++.+++.+.-
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45 46888999999999999999999999998874 3333 3467777888888999999999999887653
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-17 Score=175.84 Aligned_cols=289 Identities=11% Similarity=0.014 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 511 PDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILV 590 (902)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 590 (902)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344556666777777788888888888777653 2445566667777778888888888888877643 23566777788
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 591 DGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 591 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
..+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888888764 4456778888888888888888888888888754 44566677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
++|.+.++++.+. .+.+...+..+...+...| ++++|...
T Consensus 176 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~A~~~ 215 (330)
T 3hym_B 176 KLAERFFSQALSI-APEDPFVMHEVGVVAFQNG---------------------------------------EWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc---------------------------------------cHHHHHHH
Confidence 8888888888864 2335677777888888877 88888888
Q ss_pred HHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 750 RDRIESCG---------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 750 ~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++++.. |.+..++..++..|...|++++|+..++++++.. |+... ..++.+|...|++++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88888764 5567789999999999999999999999998844 54443 88899999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHH-HhcCCHH
Q 048778 819 NLILESGFVP-SFESHCTVIQGL-QSEGRNK 847 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l-~~~g~~~ 847 (902)
+++.+. .| +...+..++.++ ...|+.+
T Consensus 294 ~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 998774 45 467788888877 4556543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.7e-15 Score=171.68 Aligned_cols=429 Identities=11% Similarity=0.014 Sum_probs=298.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 361 CGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLF 440 (902)
Q Consensus 361 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 440 (902)
|++.++..+ -+...|..++. +.+.|++++|..+|+.+.+.. +-+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 445554432 37889999998 588999999999999999863 4467789999999999999999999999999853
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 048778 441 PDEITYNILVDGF-CREGQLDIALK----IFNSMSIF-GLV-PDGFTFTSIIDGLCK---------LGKPELANGFFGLM 504 (902)
Q Consensus 441 ~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 504 (902)
|+...|..++... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 35677777665 77776543 443 356788888876655 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH------HCC
Q 048778 505 VKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKIL------KFG 578 (902)
Q Consensus 505 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~ 578 (902)
++.........|..........|. ..+..+ +. ...+++++|..++..+. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 884111112333332221111111 011111 10 02234555665555422 111
Q ss_pred ---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 048778 579 ---LVPS--------VVTYTILVDGLFRA----GNI----ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ-------RG 632 (902)
Q Consensus 579 ---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g 632 (902)
++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 24455544332221 222 46778888888752 5577788888887775 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCC
Q 048778 633 RFK-------EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-S-NVYSALLAGLVSSNK 703 (902)
Q Consensus 633 ~~~-------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~-~~~~~l~~~~~~~~~ 703 (902)
+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++ +.|+ . ..|..++..+.+.|
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~- 370 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAE- 370 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHH-
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhc-
Confidence 876 8899999888632244688888999999999999999999999997 4554 3 47777777777777
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVE-LCRAGRIVEADR 782 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 782 (902)
++++|.++|+++++..|.+...|...+.. +...|+.++|..
T Consensus 371 --------------------------------------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 371 --------------------------------------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 89999999999998877666666655544 346899999999
Q ss_pred HHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 783 IMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG-FVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 783 ~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+|+++++.. |+... ..++..+.+.|+.++|..++++++..+ ..|+ ...|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998843 54433 788888889999999999999998753 2332 2467777777778899999999999986
Q ss_pred hCC
Q 048778 858 RYN 860 (902)
Q Consensus 858 ~~~ 860 (902)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.4e-18 Score=182.95 Aligned_cols=299 Identities=9% Similarity=-0.030 Sum_probs=210.6
Q ss_pred cCChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 561 ENKLKEEYA-MFGKILKFGL---VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 561 ~g~~~~A~~-~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
.|++++|.. .+++...... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554443211 1123445666777777777777777777777763 5566677777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccC
Q 048778 637 AEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCH 715 (902)
Q Consensus 637 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 715 (902)
|+..++++.+.. +.+..++..++.++...|++++|.+.++++.+. .|+. ..+..+.... +
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---~------------- 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGA---G------------- 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC-----------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHh---h-------------
Confidence 888887777654 456777777888888888888888888887763 3322 1111110000 0
Q ss_pred CCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 716 SDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
.......+...+..+ ..|++++|...++++++..|. +..++..++..|...|++++|+..++++++. .
T Consensus 178 -------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 247 (368)
T 1fch_A 178 -------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--R 247 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred -------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 000000111122222 566999999999999999988 8999999999999999999999999999984 4
Q ss_pred chHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------
Q 048778 794 PAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-------- 863 (902)
Q Consensus 794 p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-------- 863 (902)
|+... ..++.+|...|++++|...++++.+.. ..+...+..++.++.+.|++++|+..++++++..+..
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 55443 899999999999999999999999752 2356889999999999999999999999998764332
Q ss_pred --cchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 864 --EKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 864 --~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
....|..++.++...|++++|..++++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156788999999999999999988763
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1e-17 Score=180.76 Aligned_cols=288 Identities=11% Similarity=-0.018 Sum_probs=218.3
Q ss_pred hcCCHHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048778 525 KNGKTGEALM-IFERMVQNTD---LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIA 600 (902)
Q Consensus 525 ~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 600 (902)
..|++++|.. .+++...... ..+...+..+...+...|++++|...|+++++.. +.+..+|..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 6665544311 1134567777888888888888888888888753 346777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHh
Q 048778 601 LAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSI---------------LVRAHAS 665 (902)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------l~~~~~~ 665 (902)
+|++.|+++.+.. +.+..++..+...+...|++++|...++++.... +.+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888888764 5577788888888888888888888888888753 222222221 2333448
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVE 744 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (902)
.|++++|...++++.+..... +..++..+...+...| +++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g---------------------------------------~~~ 234 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG---------------------------------------EYD 234 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT---------------------------------------CHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC---------------------------------------CHH
Confidence 899999999999998742111 4788888888898888 999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+|...++++++..|.+..+|..++..+...|++++|+..|+++++. .|+... ..++.+|...|++++|...++++.
T Consensus 235 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 455444 889999999999999999999998
Q ss_pred HcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 823 ESGFVP----------SFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 823 ~~~~~p----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+..... ....|..++.++...|++++|..++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 632111 1578999999999999999999988764
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.7e-18 Score=175.68 Aligned_cols=392 Identities=10% Similarity=0.043 Sum_probs=148.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429 (902)
Q Consensus 350 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 429 (902)
+.|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556777777777776 23347777777777777777777777542 466677777777777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 430 LLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509 (902)
Q Consensus 430 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 509 (902)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3445666677777777777777666663 255556777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTIL 589 (902)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (902)
..|..+++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 24666666666666666666666665 24566666666666666666664433321 1223333345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC------CHHHHHHHHHH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF-DLGVSP------NHITYSILVRA 662 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p------~~~~~~~l~~~ 662 (902)
+..|.+.|.+++|+.+++..+... +-....|+.+.-.|++- ++++..+.++... ..+++| +...|..++..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665543 44445555555555543 1222222222221 112222 12334445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|.+.++++.|.. .|.+. +|+..--
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~--------------------------------------------------- 315 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKE--------------------------------------------------- 315 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCH---------------------------------------------------
T ss_pred HHhhchHHHHHH---HHHhC--Chhhhhh---------------------------------------------------
Confidence 555555554443 22221 1111100
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
..|.+++.+ +.+...|...+..|. +....++.-+...+...+.+ ...+..+.+.|.+.-...++....
T Consensus 316 -----~~f~~~~~k-v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 316 -----GQFKDIITK-VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp -----HHHHHHHHH-CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred -----HHHHHHHhc-hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 122222222 556777777777776 33444455444444322223 455677788888888888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 823 ~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..+...-.++++ ..|...++++.-..-++.
T Consensus 384 ~~n~~~vnealn---~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 384 NHNNKSVNESLN---NLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TTCCHHHHHHHH---HHHHHTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 654333334444 448888887766665554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=9.9e-18 Score=180.62 Aligned_cols=262 Identities=10% Similarity=-0.023 Sum_probs=161.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
+...+..+...+.+.|++++|...|+++++.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777643 3356777777777777777777777777777653 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPN-----------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQ-LNSNVYSAL 694 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 694 (902)
+|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 7777777777777777776532 22 122233455666666666666666666653211 145566666
Q ss_pred HHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048778 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA 774 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (902)
...+...| ++++|.+.++++++..|.+..+|..++..|...
T Consensus 220 ~~~~~~~g---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 220 GVLFHLSG---------------------------------------EFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHHHHT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 66666666 666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-------------SFESHCTVIQG 839 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~ 839 (902)
|++++|+..|+++++. .|+... ..++.+|...|++++|...++++++. .| +...|..++.+
T Consensus 261 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHH
Confidence 6666666666666663 343332 66666666666666666666666642 11 13455566666
Q ss_pred HHhcCCHHHHHHHHHH
Q 048778 840 LQSEGRNKQAKNLVSD 855 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~ 855 (902)
+...|+.+.|....++
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 6666666666555544
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.9e-17 Score=178.37 Aligned_cols=272 Identities=12% Similarity=0.016 Sum_probs=220.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888999999999999999999999874 6678899999999999999999999999999864 556899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+|...|++++|...++++.+. .|+.. .+..+. + ....+...+..+...
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~------~-----------------------~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK------G-----------------------SPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC------------------------------------------------CC
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhc------c-----------------------chHHHHHHHHHHhhh
Confidence 999999999999999999873 33221 111110 0 001111223334445
Q ss_pred ccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~ 816 (902)
|++++|.+.++++++.+|. ++.++..++..|...|++++|+..|+++++. .|+... ..++.+|...|++++|+.
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5999999999999999988 8999999999999999999999999999985 455444 999999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CcchhHHHHHHHHhcCCcHhHH
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-----------EEKAAVLPYIEFLLTGDELGKS 884 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a 884 (902)
.++++++. .| +...+..++.+|...|++++|+..++++++..+. .+...|..+..++...|+.+.+
T Consensus 269 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999985 45 4688999999999999999999999999866422 1356788999999999999998
Q ss_pred HHHHHH
Q 048778 885 IDLLNL 890 (902)
Q Consensus 885 ~~~l~~ 890 (902)
.++.++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887664
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4e-16 Score=174.57 Aligned_cols=347 Identities=9% Similarity=-0.049 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCH
Q 048778 513 EATITALADGHCKNGKTGEALMIFERMVQN-----T--DLKTPHVLNSFLDVLCK--ENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
..+|..+...|...|++++|...+++..+. + ......++..+..++.. .+++++|...|++.++.. +-+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~ 172 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH
Confidence 345555555555556666655555554331 0 01123344444444433 345677777777776532 1134
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 584 VTYTILVDG---LFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 584 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
..+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 444444443 234566677777777776653 4455555555544443 356677888887777653 4566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
..+...|...|++++|...++++.+. .| +..++..+...|...+..... ........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~--------------------~~~~~~~~ 308 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN--------------------LRENGMYG 308 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH--------------------C------C
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHH
Confidence 77888888888888888888887763 34 455666666555443300000 00000001
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHH-HHHccCCh
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIG-CYCKERKY 811 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~-~~~~~g~~ 811 (902)
.....+..++|...++++.+.+|.+..++..++..|...|++++|++.|+++++..+.+.... ..++. .+...|++
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 111223678999999999999999999999999999999999999999999998654444322 33333 34578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
++|+..++++++. .|+..... +..+.+..++++.++..+ .+...|..++..+...|++++|++.+++.
T Consensus 389 ~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999984 56543221 223455666677665543 34567888999999999999999999998
Q ss_pred HhcCc
Q 048778 892 DQVHY 896 (902)
Q Consensus 892 ~~~~~ 896 (902)
.+.|.
T Consensus 457 Le~~~ 461 (472)
T 4g1t_A 457 LESGS 461 (472)
T ss_dssp -----
T ss_pred HhcCC
Confidence 88764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=8.5e-17 Score=170.21 Aligned_cols=274 Identities=11% Similarity=-0.012 Sum_probs=198.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4455556666677777777777666643 4455666667777777777777777777776643 4456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh-hh-hhhhhcc
Q 048778 666 TGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS-SK-NFLREMD 742 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 742 (902)
.|++++|.+.++++.+. .|+ ...+..+...+.. ....... +. .+...|+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVD--------------------------IDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC----------------------------------------------CCTTSHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHH--------------------------HHHHHHHHHhHHHHHccc
Confidence 77777777777777753 232 2222221110000 0000011 11 2445569
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+++|.+.++++++..|.+..++..++..|...|++++|+..++++.+.. |+... ..++.+|...|++++|...+++
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999854 54433 8999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------cchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 821 ILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-----------EKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 821 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
+.+.. ..+...+..++.++...|++++|+..++++++..... +...|..++..+.+.|++++|..+++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99753 3356889999999999999999999999998775442 46678889999999999999999887
Q ss_pred HHH
Q 048778 890 LID 892 (902)
Q Consensus 890 ~~~ 892 (902)
+..
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.1e-17 Score=172.77 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=137.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 048778 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANG 499 (902)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (902)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 566788888888877 23348888888888888888888888542 467788888888888899999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 500 FFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579 (902)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (902)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766664 4457778888889999999888887774 266678999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659 (902)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 659 (902)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +..+......+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36889999999999999999999988 2788999999999999999999655443 23344445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
+..|.+.|++++|+.+++..+... +-...+|+-|.-.|.+-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~------------------------------------- 255 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK------------------------------------- 255 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-------------------------------------
Confidence 899999999999999999988532 335678888877777765
Q ss_pred hccHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGG-----STTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
.+++.+.++.|..-+...| .+...|.-+...|.+.++++.|....
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 2266666666665444434 46778999999999999999998743
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=193.69 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 048778 231 DTHICTSLVLGHCRGNDLKEAFKVFDVMSKE--ASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308 (902)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 308 (902)
-..+||+||++||+.|++++|.++|++|.+. .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456677777777777777777776665421 15666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 309 LIKALCDISLT-DKALSLFDEMVVKRCKPNAHTYTVLIDRLCR 350 (902)
Q Consensus 309 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (902)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666666653 5666666666666666666666666655444
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.6e-16 Score=168.09 Aligned_cols=265 Identities=11% Similarity=-0.024 Sum_probs=207.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIING 627 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (902)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666777777888888888888877643 3366777778888888888888888888887763 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL--------------VR-AHASTGRLDHAFKIVSFMVANGCQLNSNVYS 692 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 692 (902)
+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+. .+.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-NPNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-STTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHH
Confidence 888888888888888887653 2222333332 22 367789999999999999875 234678888
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
.+...+...| ++++|.+.++++++..|.+..++..++..+.
T Consensus 177 ~la~~~~~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 177 SLGVLYNLSN---------------------------------------NYDSAAANLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp HHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---------------------------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888 9999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-----------SFESHCTVIQG 839 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~ 839 (902)
..|++++|+..++++.+.. |+... ..++.+|...|++++|...++++.+..... +...+..++.+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999999999998854 54333 889999999999999999999998642121 35788899999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048778 840 LQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~ 857 (902)
+.+.|+.++|..++++++
T Consensus 296 ~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 999999999999987643
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=190.24 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=87.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 267 NSVTFTTLIHGLCEVGRLDEAFSLKDEMCE---KGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445788888888888888888888877653 36777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCH-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 344 LIDRLCREGKI-DEANGMCGKMLQDGHFPGVVTYNVLINGYCK 385 (902)
Q Consensus 344 li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 385 (902)
+|.++|+.|+. ++|.++|++|.+.|+.||.++|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777777763 5677777777777777777777777765544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.8e-16 Score=159.55 Aligned_cols=269 Identities=9% Similarity=0.004 Sum_probs=155.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048778 524 CKNGKTGEALMIFERMVQNTDLKTP--HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIAL 601 (902)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 601 (902)
...|++..|+..++..... .|+. .....+...|...|++++|...++.. -+|+..++..+...+...|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3455555555555544321 1221 23333455566666666666544331 23455566666666666666777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 602 AMSMIEVMKLAGCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 602 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
|++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666654333 444555556666677777777766665 3556666667777777777777777777776
Q ss_pred HCCCCCCHHHHH---HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC
Q 048778 681 ANGCQLNSNVYS---ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757 (902)
Q Consensus 681 ~~g~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 757 (902)
+. .|+....+ .++..+...| ++++|..+|+++++..
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~---------------------------------------~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGE---------------------------------------KLQDAYYIFQEMADKC 196 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTT---------------------------------------HHHHHHHHHHHHHHHS
T ss_pred hh--CcCcHHHHHHHHHHHHHhCch---------------------------------------HHHHHHHHHHHHHHhC
Confidence 53 34432111 1222222233 7777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH-HHHHHHHHHHcCCCCCHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD-CLEFMNLILESGFVPSFESHC 834 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~ 834 (902)
|.++..|+.++.++.+.|++++|++.++++++. .|+... ..++.++...|+.++ +.++++++.+. .|+...
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~-- 270 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF-- 270 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH--
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH--
Confidence 777777777777777777777777777777763 344433 666666777777654 45677776653 454322
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 048778 835 TVIQGLQSEGRNKQAKNL 852 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~ 852 (902)
+.+...+.+.++++..-
T Consensus 271 -~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 271 -IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 22234455555555443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.4e-15 Score=166.12 Aligned_cols=366 Identities=13% Similarity=0.021 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQD-----G---HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR-----T 403 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 403 (902)
....|+.|...+...|++++|.+.|++..+. + -.....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456666767777777777777776665431 0 1113455666666666666666666666554321 0
Q ss_pred -CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048778 404 -CK-PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF 481 (902)
Q Consensus 404 -~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (902)
.. ....++..+..++...| .+++++|.+.|++..+.. +.+...+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~---------------------------------~~~y~~A~~~~~kal~~~-p~~~~~~ 175 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG---------------------------------GNQNERAKVCFEKALEKK-PKNPEFT 175 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC---------------------------------TTHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc---------------------------------cccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 00 01223333322222221 223444444444444332 1222233
Q ss_pred HHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048778 482 TSIIDG---LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIFERMVQNTDLKTPHVLNSF 554 (902)
Q Consensus 482 ~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 554 (902)
..+... +...++.++|++.+++..+.. +.+..++..+...+.. .++.++|...+++..... +.+..++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 222222 122334444444444444432 1133333333222222 233444444444444321 1233344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCC
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR-------------------AGNIALAMSMIEVMKLAGCP 615 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~~~~ 615 (902)
...|...|++++|...+++..+.. +.+..++..+...|.. .+..+.|...+++..+.. +
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 444555555555555555444421 1123333333333321 122445555555555432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH--ITYSILVR-AHASTGRLDHAFKIVSFMVANGCQLNSNVYS 692 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 692 (902)
.+..++..+...+...|++++|+..|++.++....+.. ..+..+.. .+...|++++|+..+++.++ +.|+.....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~ 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH
Confidence 33344555566666666666666666666554321111 11222222 12345566666666666554 333321110
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
+ ....+.+++++.++.+|.++.+|..|+..|.
T Consensus 410 ---------~---------------------------------------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 410 ---------K---------------------------------------MKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp ---------H---------------------------------------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred ---------H---------------------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 3334444555555555666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048778 773 RAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~ 790 (902)
..|++++|++.|+++++.
T Consensus 442 ~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHCC------------
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 666666666666666553
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=9.6e-16 Score=157.90 Aligned_cols=254 Identities=14% Similarity=0.090 Sum_probs=178.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 048778 488 LCKLGKPELANGFFGLMVKKGISPDE--ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK 565 (902)
Q Consensus 488 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (902)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ...|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554332 2222 2334455667777777776665533 13345566667777777777777
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 566 EEYAMFGKILKFGLVP-SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644 (902)
Q Consensus 566 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 644 (902)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777655434 455666667778888888888888776 456777888888888888888888888888
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 645 FDLGVSPNHITY---SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 645 ~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.+.. |+.... ..++..+...|++++|..+++++++. .+.+...++.+..++.+.|
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g------------------- 214 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG------------------- 214 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-------------------
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-------------------
Confidence 7653 443211 22334444568889999999988875 4557788888888888888
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCchHh
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE-ADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~ 797 (902)
++++|.+.|+++++.+|.++.++..++..+...|+.++ +.++++++++ ..|+..
T Consensus 215 --------------------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 215 --------------------RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 89999999999998889899999999988888988865 5688888887 456655
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3.3e-15 Score=146.84 Aligned_cols=196 Identities=15% Similarity=0.041 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
+++...+..+...+.+.|++++|...+++.++. .| +...+..+...+.+.|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g-------------------------- 53 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLG-------------------------- 53 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTT--------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC--------------------------
Confidence 345555666666666666666666666666652 33 4555666666666666
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCchHh
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA-----------GRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...++++++.+|.+..++..++..+... |++++|+..++++++ ..|+..
T Consensus 54 -------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~ 118 (217)
T 2pl2_A 54 -------------LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYA 118 (217)
T ss_dssp -------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred -------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccH
Confidence 666677667666666666666666666666666 777777777777766 334433
Q ss_pred H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 798 I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
. ..++.+|...|++++|+..++++++.. .+...+..++.+|...|++++|+..++++++..+. +...+..++..+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 3 666666777777777777777776654 45566666667777777777777777776665432 334555666666
Q ss_pred hcCCcHhHHHHHHHHH
Q 048778 876 LTGDELGKSIDLLNLI 891 (902)
Q Consensus 876 ~~~g~~~~a~~~l~~~ 891 (902)
...|++++|++.+++.
T Consensus 196 ~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 196 LLKGKAEEAARAAALE 211 (217)
T ss_dssp TC--------------
T ss_pred HHccCHHHHHHHHHHH
Confidence 6777777777666654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.4e-14 Score=147.09 Aligned_cols=225 Identities=9% Similarity=0.056 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG--VSPN----HITY 656 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 656 (902)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|+..++++.+.. ..++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777777888888888888777765 667777778888888888888888888776532 1122 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..+..++...|++++|...++++.+. .|+.. .+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~---------------------------------- 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLR---------------------------------- 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHH----------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHh----------------------------------
Confidence 78888888888888888888888763 44432 233444
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++++|...++++...+|.+...+..++..+...|++++|+..++++++.. |+... ..++.+|...|++++|
T Consensus 120 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 120 -----NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp -----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHH
Confidence 88889999998888888888888899999999999999999999988844 44333 7888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
...++++++.. ..+...+..++.++...|++++|...++++++..
T Consensus 193 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 193 IADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999888752 2346788888889999999999999999887654
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-14 Score=141.73 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSA 693 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 693 (902)
+++...+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..+++.++. .| +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 4455666777777777777777777777777654 455677777777777777777777777777763 34 4556666
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
+...+...+... .......|++++|...++++++.+|.+..+|..++..|..
T Consensus 79 lg~~~~~~~~~~----------------------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 79 LSEAYVALYRQA----------------------------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHHTC----------------------------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------------------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 666666651000 0001112399999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|++++|+..|+++++.. .+... ..++.+|...|++++|+..++++++. .| +...+..++.++...|++++|+.
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999966 34444 89999999999999999999999985 46 46888899999999999999999
Q ss_pred HHHHH
Q 048778 852 LVSDL 856 (902)
Q Consensus 852 ~~~~~ 856 (902)
.+++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99874
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=4.9e-14 Score=155.25 Aligned_cols=193 Identities=15% Similarity=0.038 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 585 TYTILVDGLFRAG---NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR----GRFKEAEMLLFKMFDLGVSPNHITYS 657 (902)
Q Consensus 585 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~ 657 (902)
.+..+...|...| +.++|++.|++..+.| +++...+..+...|... +++++|+.+|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5555566666666 6666666666666665 44555444555555433 46666666666655 2 2344444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 658 ILVRA-H--ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 658 ~l~~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+... + ...+++++|++++++..+.| +...+..|...|. .|.. .
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g------------------~----------- 299 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW------------------V----------- 299 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS------------------S-----------
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC------------------C-----------
Confidence 55554 2 34566666666666666544 3444555555554 2200 0
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc---
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK--- 807 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~--- 807 (902)
..+.++|.+.|+++. +.++.++..|+..|.. ..++++|...|+++.+.|. ......|+.+|..
T Consensus 300 -----~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 300 -----PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKG 369 (452)
T ss_dssp -----CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTT
T ss_pred -----CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCC
Confidence 006666666666665 5556666666665555 2366666666666665431 1111555555543
Q ss_pred -cCChHHHHHHHHHHHHcC
Q 048778 808 -ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 808 -~g~~~~A~~~~~~~~~~~ 825 (902)
..+.++|..+++.+.+.|
T Consensus 370 ~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 346666666666666554
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=3.2e-14 Score=156.69 Aligned_cols=375 Identities=11% Similarity=0.011 Sum_probs=238.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 449 LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---ELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 449 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
+...+.+.|++++|.++|++..+.| +..++..|...|...|+. ++|...|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555666666666666665544 222333444444555555 6666666666543 33344444443444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048778 526 NG-----KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK---EEYAMFGKILKFGLVPSVVTYTILVDGLFRAG 597 (902)
Q Consensus 526 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 597 (902)
.+ +.++|...|++..+.+. +..+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 56677777777776543 235556666666555433 3444444444443 3445666777777777
Q ss_pred CH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 048778 598 NI----ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG---RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST---- 666 (902)
Q Consensus 598 ~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---- 666 (902)
.+ +.+..+++.... + .|+ .+..|...|...| +.++|+..|++..+.| +++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 44 444444444433 2 344 7788888999999 9999999999999988 67777767788888655
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV---SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
+++++|+++|++.. +-+...+..|...|. ..+ +.
T Consensus 231 ~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~---------------------------------------d~ 267 (452)
T 3e4b_A 231 PDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELG---------------------------------------DV 267 (452)
T ss_dssp CCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGC---------------------------------------CH
T ss_pred CCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCC---------------------------------------CH
Confidence 79999999999986 335566666766632 333 99
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHc----cCChHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-----RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCK----ERKYDD 813 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~----~g~~~~ 813 (902)
++|.+.|+++.+. .++.++..|+..|. .| ++++|+..|+++. .| +... ..|+..|.. ..++++
T Consensus 268 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 268 EQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9999999999975 48889999999988 55 9999999999986 22 2223 788888876 449999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
|..++++..+.|. ......++.+|.. ..+.++|..+++++.+.+.. +.......+......++..+|..+.+
T Consensus 341 A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 341 ALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998662 3466677777764 45899999999999888753 33333333444455677888888888
Q ss_pred HHHhcC
Q 048778 890 LIDQVH 895 (902)
Q Consensus 890 ~~~~~~ 895 (902)
+..+..
T Consensus 417 ~~~~~~ 422 (452)
T 3e4b_A 417 QELAAR 422 (452)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 876653
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.6e-14 Score=140.88 Aligned_cols=220 Identities=10% Similarity=0.049 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAG--CPPN----VHTYTVI 624 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l 624 (902)
+..+...+...|++++|...|+++.+.. .+...|..+...+...|++++|++.++++.+.. ..++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 344444444455555555555555555444321 0011 2444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
...+...|++++|...++++.+. .|+. ..+.+.|++++|...++++.+. .+.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKS-- 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhc--
Confidence 55555555555555555555542 2332 2233445555555555555542 1123344555555555555
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
++++|...++++++..|.+..+|..++..|...|++++|+..+
T Consensus 154 -------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 154 -------------------------------------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5666666666666555555666666666666666666666666
Q ss_pred HHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 785 ~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+++++.. |+... ..++.+|...|++++|...++++.+
T Consensus 197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665532 33222 5555566666666666666665554
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=9.1e-14 Score=147.91 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR-FKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
...|..+...+.+.|++++|++.++++++.. +-+...|+.+..++...|+ +++|+..++++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4557777777888888888888888888764 5567788888888888886 899999988888764 456788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
++...|++++|+..++++++. .| +...|..+..++...|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g-------------------------------------- 214 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFK-------------------------------------- 214 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT--------------------------------------
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcC--------------------------------------
Confidence 888889999999999888874 44 6778888888888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCchHhH--HHHHHHHHccC--C
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR-AGRIVEA-----DRIMKDIMKSGVFPAKAI--TSIIGCYCKER--K 810 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g--~ 810 (902)
++++|+..++++++.+|.+..+|+.++.+|.. .|..++| ++.|+++++ +.|+... ..++.++...| +
T Consensus 215 -~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 215 -LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp -CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGG
T ss_pred -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccc
Confidence 88889999999999888899999999988888 5555777 488888888 4566554 77788888877 6
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhCCCCCcchhHHHHHHHHh
Q 048778 811 YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEG--------R-NKQAKNLVSDL-FRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 876 (902)
+++|++.++++ + ..| +...+..++++|.+.| + .++|+++++++ .+.++. ....|..++..+.
T Consensus 292 ~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp CHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 88888888887 3 345 4577888888888764 2 58899999887 555422 3445655555543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1e-13 Score=141.97 Aligned_cols=233 Identities=10% Similarity=0.037 Sum_probs=168.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN--HITYSILVRAH 663 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~ 663 (902)
+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+..-.++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445666777788888888888877753 33445677777788888888888888888876321122 33477788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
...|++++|++.++++.+. .+.+..++..+...+...| ++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~---------------------------------------~~ 124 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKG---------------------------------------NF 124 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTT---------------------------------------CH
T ss_pred HHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcc---------------------------------------CH
Confidence 8888888888888888774 2335567777777777777 88
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC---hHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK---YDDCLEFM 818 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~---~~~A~~~~ 818 (902)
++|.+.++++++..|.+...|..++..+...+++++|++.|+++++. .|+... ..++.++...|+ +++|...+
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 88888888888888888888888884444455888888888888874 455433 677777777777 77888888
Q ss_pred HHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 819 NLILESG-FVPS------FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 819 ~~~~~~~-~~p~------~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+++.+.. -.|+ ...|..++.+|...|++++|+..++++++..+
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 8877421 1233 25777788888888999999999998877753
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.1e-13 Score=141.76 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLA 696 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~ 696 (902)
..+......+...|++++|+..++++.+.. +.+...+..+..+|...|++++|+..++++++.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788899999999999999999864 44566889999999999999999999999998432222 334778888
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+...| ++++|.+.++++++.+|.+..+|..++..|...|+
T Consensus 83 ~~~~~~---------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 83 ILMKKG---------------------------------------QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHTT---------------------------------------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHcc---------------------------------------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 888888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGR---NKQAK 850 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~---~~~A~ 850 (902)
+++|+..++++++. .|+... ..++..+...+++++|...++++.+. .|+ ...+..++.++...|+ +++|+
T Consensus 124 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 124 FPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 99999999999884 455544 77773444556999999999999985 454 6888889999998898 88899
Q ss_pred HHHHHHHhCC-CCCc------chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 851 NLVSDLFRYN-GIEE------KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 851 ~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
..++++++.. ..|+ ...+..++..+...|++++|++.++++.+...
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 9999987663 1222 24677788889999999999999999987653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.4e-12 Score=131.84 Aligned_cols=225 Identities=11% Similarity=-0.038 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYS 657 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 657 (902)
+..++..+...|...|++++|++.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666777777788888888888888888773 355667777777777 888888888888887764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 658 ILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 658 ~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
.+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~--------------------------- 128 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR--------------------------- 128 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC---------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc---------------------------
Confidence 77788877 788888888888887753 55666677777766 55
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCY 805 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~ 805 (902)
++++|.+.|+++.+.+ +..++..++..|.. .+++++|+..|+++.+.+ +......++.+|
T Consensus 129 ------------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 192 (273)
T 1ouv_A 129 ------------DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMY 192 (273)
T ss_dssp ------------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 7888888888887764 56677777777777 778888888888877743 222227777777
Q ss_pred Hc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 048778 806 CK----ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 806 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 861 (902)
.. .+++++|+.+++++.+.+ | ...+..++.+|.. .|++++|+.+++++++.+.
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77 788888888888877753 2 5566677777777 7788888888888776653
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2.6e-12 Score=131.50 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR----AGNIALAMSMIEVMKLAGCPPNVHTYT 622 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 622 (902)
++.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666667777777777777777777662 345666667777777 777777777777777654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 623 VIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 623 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
.+...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+.++++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777643 44555555
Q ss_pred HHHHHh----cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048778 695 LAGLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVE 770 (902)
Q Consensus 695 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 770 (902)
...|.. .+ +.++|.+.|+++.+. .++.++..++..
T Consensus 153 g~~~~~~~~~~~---------------------------------------~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 191 (273)
T 1ouv_A 153 GSLYDAGRGTPK---------------------------------------DLKKALASYDKACDL--KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHTSSSCC---------------------------------------CHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHcCCCCCC---------------------------------------CHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 555555 33 777777777777765 345666777777
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048778 771 LCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 771 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 825 (902)
|.. .+++++|++.|+++.+.+ |......++.+|.. .+++++|.++++++.+.+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 777777777777777643 33323666777776 777777777777776653
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.9e-13 Score=143.99 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=205.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN-IALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
...|..+...+...|++++|+..++++++.. +-+...|+.+...+...|+ +++|+..|+++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456777788888999999999999988753 2357889999999999997 999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCc
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVS-SNKA 704 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~-~~~~ 704 (902)
++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++. .| +...|+.+...+.. .|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~-- 249 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTG-- 249 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC--
Confidence 9999999999999999999875 567899999999999999999999999999984 45 67889889888888 44
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA-----FRLRDRIESCGGSTTDFYNFLVVELCRAG--RI 777 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 777 (902)
..++| ++.|+++++.+|.+..+|+.++..+...| ++
T Consensus 250 -------------------------------------~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 250 -------------------------------------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp -------------------------------------SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred -------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 33444 69999999999999999999999999988 68
Q ss_pred HHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC---------ChHHHHHHHHHH-HHcCCCCCH-HHHHHHHHHHH
Q 048778 778 VEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER---------KYDDCLEFMNLI-LESGFVPSF-ESHCTVIQGLQ 841 (902)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~~-~~~~~l~~~l~ 841 (902)
++|++.++++ + ..|+... ..++++|.+.| .+++|+++++++ .+ +.|.. ..|..++..+.
T Consensus 293 ~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 293 PNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 9999999888 4 4565544 88999998874 359999999999 66 36754 66666666554
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.6e-13 Score=139.25 Aligned_cols=243 Identities=12% Similarity=-0.052 Sum_probs=151.3
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGC---PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
.|++++|++.|+++.+... +.+..++..+...+...|++++|...++++.+.. +.+...|..++.++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665421 1134456666666777777777777777766543 34566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
...++++++. .+.+...+..+...+...| ++++|.+.+++
T Consensus 97 ~~~~~~al~~-~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~~ 136 (275)
T 1xnf_A 97 YEAFDSVLEL-DPTYNYAHLNRGIALYYGG---------------------------------------RDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHH-CTTCTHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHhc-CccccHHHHHHHHHHHHhc---------------------------------------cHHHHHHHHHH
Confidence 7777777663 1224566666666666666 77777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-- 829 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 829 (902)
+++..|.+...+..+. .+...|++++|+..++++.... |+... ..++..+...++.++|...++++.+. .|+
T Consensus 137 a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 211 (275)
T 1xnf_A 137 FYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATD--NTSLA 211 (275)
T ss_dssp HHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS--HHHHH
T ss_pred HHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--ccccc
Confidence 7777666654444333 3355577777777777666632 33333 55666667777777777777776543 221
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHH
Q 048778 830 ---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLL 888 (902)
Q Consensus 830 ---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l 888 (902)
...+..++.++.+.|++++|...++++++.. |+. +.....++...|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4667777778888888888888888876654 222 223355666777777777665
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.4e-13 Score=139.50 Aligned_cols=243 Identities=13% Similarity=-0.072 Sum_probs=174.9
Q ss_pred cCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLV---PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (902)
.|++++|...++++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777764221 135567777888888888888888888888764 45677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 638 EMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 638 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
+..++++.+.. +.+...+..++.+|.+.|++++|...++++.+. .|+.......+..+...|
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~--------------- 158 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKL--------------- 158 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhc---------------
Confidence 88888888753 445778888888888888888888888888873 454443333444444445
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-- 795 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 795 (902)
++++|...++++....|++...+. ++..+...++.++|+..++++.+. .|+
T Consensus 159 ------------------------~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 211 (275)
T 1xnf_A 159 ------------------------DEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLA 211 (275)
T ss_dssp ------------------------CHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHH
T ss_pred ------------------------CHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--ccccc
Confidence 888999999888888777766655 666777778888888888888653 232
Q ss_pred ---HhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 796 ---KAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 796 ---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
... ..++.+|...|++++|...++++.+. .|+. +...+.++...|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 122 77888899999999999999998874 4532 223355677888888888776
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.3e-12 Score=132.07 Aligned_cols=199 Identities=15% Similarity=0.092 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 697 (902)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777888888888888888877653 4467777778888888888888888888877642 3356677777777
Q ss_pred HHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 048778 698 LVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES--CGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 775 (902)
+...| ++++|.+.++++++ ..|.+...+..++..|...|
T Consensus 115 ~~~~g---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 115 LYEQK---------------------------------------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHTT---------------------------------------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHh---------------------------------------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 77777 88888888888877 55667777888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
++++|+..++++.+.. |+... ..++.+|...|++++|..+++++.+.. ..+...+..++.++...|+.++|..++
T Consensus 156 ~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp CHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888887743 33322 777777888888888888888877642 234566777777777888888888888
Q ss_pred HHHHhCC
Q 048778 854 SDLFRYN 860 (902)
Q Consensus 854 ~~~~~~~ 860 (902)
+++.+..
T Consensus 233 ~~~~~~~ 239 (252)
T 2ho1_A 233 LQLKRLY 239 (252)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 8876654
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.5e-12 Score=131.48 Aligned_cols=198 Identities=13% Similarity=-0.019 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAH 663 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 663 (902)
..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555556666666666666666665542 3455566666666666666666666666666543 33556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
...|++++|.++++++.+.+..| +...+..+...+...| +
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~ 156 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK---------------------------------------K 156 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT---------------------------------------C
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC---------------------------------------C
Confidence 66777777777776666522334 3445555666666666 7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+++|.+.++++++..|.+...+..++..|...|++++|...++++.+.. |+... ..++.+|...|++++|.+++++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777777666667777777777777777777777777776633 33222 6666667777777777777777
Q ss_pred HHHc
Q 048778 821 ILES 824 (902)
Q Consensus 821 ~~~~ 824 (902)
+.+.
T Consensus 235 ~~~~ 238 (252)
T 2ho1_A 235 LKRL 238 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.4e-12 Score=128.97 Aligned_cols=201 Identities=8% Similarity=-0.045 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence 44567777777888888888888888877653 445777777778888888888888888877764 2335666777777
Q ss_pred HHHhc-CCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Q 048778 697 GLVSS-NKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES--CGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 697 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 773 (902)
.+... | ++++|.+.++++++ ..|.+...+..++..+..
T Consensus 85 ~~~~~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 85 FLCGRLN---------------------------------------RPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHTTTC---------------------------------------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcC---------------------------------------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 77777 6 78888888888777 335556777778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|++++|+..++++.+.. |+... ..++.+|...|++++|..+++++.+.....+...+..++..+...|+.++|..
T Consensus 126 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888877743 43332 77777778888888888888877764211345566666667777788888887
Q ss_pred HHHHHHhCC
Q 048778 852 LVSDLFRYN 860 (902)
Q Consensus 852 ~~~~~~~~~ 860 (902)
+++.+.+..
T Consensus 204 ~~~~~~~~~ 212 (225)
T 2vq2_A 204 YEAQLQANF 212 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 777765443
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=4e-13 Score=134.86 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHHHH
Confidence 44444555555555555555555555432 334555555555556666666666666655543 1224455555555555
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..| ++++|.+.++++++..|.+...+..++..+...|++++
T Consensus 103 ~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 103 VKE---------------------------------------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HTT---------------------------------------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred Hhc---------------------------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 555 66666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
|+..++++.+.. |+... ..++.+|...|++++|...++++.+.. ..+...+..++.++...|++++|...+++++
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666665532 32222 556666666666666666666665532 2234556666666666666666666666665
Q ss_pred hCC
Q 048778 858 RYN 860 (902)
Q Consensus 858 ~~~ 860 (902)
+..
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 544
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=5.4e-13 Score=133.92 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34456666667777777777777777777653 4466777777777777788888888877777653 446677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
.+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~--------------------------------------- 139 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE--------------------------------------- 139 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS---------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 8888888888888888777642 335666777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+.. |+... ..++.+|...|++++|...++
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888888888777788888888888888888888888888887743 33332 777788888888888888888
Q ss_pred HHHHc
Q 048778 820 LILES 824 (902)
Q Consensus 820 ~~~~~ 824 (902)
++.+.
T Consensus 218 ~~~~~ 222 (243)
T 2q7f_A 218 KAIDI 222 (243)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 88764
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=3.8e-12 Score=125.87 Aligned_cols=202 Identities=10% Similarity=-0.078 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566677777777888888888887777653 4456677777778888888888888888877653 446777778888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 662 AHAST-GRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 662 ~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
.+... |++++|...++++.+.+..|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------------- 127 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG------------------------------------- 127 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC-------------------------------------
Confidence 88888 888888888888876333343 456667777777777
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+..+..+... ..+...+...|+.++|..++
T Consensus 128 --~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 128 --QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp --CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 888888888888888888888888888888888888888888888877443112222 66667777888888888888
Q ss_pred HHHHHc
Q 048778 819 NLILES 824 (902)
Q Consensus 819 ~~~~~~ 824 (902)
+.+.+.
T Consensus 206 ~~~~~~ 211 (225)
T 2vq2_A 206 AQLQAN 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3.5e-13 Score=147.55 Aligned_cols=269 Identities=12% Similarity=0.025 Sum_probs=195.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDL----GV-SPNHITY 656 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~ 656 (902)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|+..+++..+. +- +.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4445566777788888888888777753 2233 35677777778888888888887777642 11 1234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+...|...|++++|...++++.+. +-.+ ...++..+...+...|
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------------- 180 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG----------------------------- 180 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-----------------------------
Confidence 77888888889999998888887753 1112 2345556666666666
Q ss_pred hhhhhhhhhcc-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMD-----------------VEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 732 ~~~~~~~~~~~-----------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
+ +++|.+.++++++.. +....++..++..|...|++++|+..+++++
T Consensus 181 ----------~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 181 ----------KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp ----------HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6 889999888876652 3345688999999999999999999999997
Q ss_pred HcCCC---chH-h-H-HHHHHHHHccCChHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 789 KSGVF---PAK-A-I-TSIIGCYCKERKYDDCLEFMNLILESG--F-VP--SFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 789 ~~~~~---p~~-~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+.... +.. . . ..++.+|...|++++|..+++++.+.. . .+ ...++..++.++...|++++|..++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63211 111 1 3 788999999999999999999988521 1 11 14778889999999999999999999987
Q ss_pred hCCCC-----CcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 858 RYNGI-----EEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 858 ~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+.... .....+..++..+.+.|++++|.+.+++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 65221 11346777888899999999999999988764
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4.4e-13 Score=146.37 Aligned_cols=294 Identities=11% Similarity=0.003 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL----GVSP- 651 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 651 (902)
.....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666677777788888888887777753 223 246677777788888888888887776532 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCC
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHD 726 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (902)
...++..+...|...|++++|...++++.+... .++ ..++..+...+...|+..+...... .
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-------------~ 152 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD-------------V 152 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccch-------------h
Confidence 145677788888888999999888888775210 011 3355666666666661000000000 0
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cch-H
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPA-K 796 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~ 796 (902)
...... ....+++|.+.++++++.. +....++..++..|...|++++|+..++++++... .+. .
T Consensus 153 ~~~~~~------a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 153 GEFPEE------VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp CCCCHH------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhh------HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 000000 0002888888888876652 33356788999999999999999999999875321 111 1
Q ss_pred h-H-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----
Q 048778 797 A-I-TSIIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE----- 864 (902)
Q Consensus 797 ~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~----- 864 (902)
. . ..++.+|...|++++|..+++++.+. +..+. ..++..++.++...|++++|...++++++......
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 1 2 78889999999999999999998742 11111 46778899999999999999999999876522111
Q ss_pred chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 865 KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
...+..++..+...|++++|++.+++..+.
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446777888899999999999999887653
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=3.2e-13 Score=147.52 Aligned_cols=291 Identities=14% Similarity=0.089 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTY 621 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~ 621 (902)
+......+...|++++|...|+++.+... .+ ...|..+...|...|++++|...++++... +-.| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444445555555555555555554321 12 234555555666666666666666654331 1111 12355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSILVRAHASTGR--------------------LDHAFKIV 676 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 676 (902)
..+...+...|++++|...+++..+..- .++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5666666667777777766666653200 011 3356667777777777 77777777
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 677 SFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 677 ~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
++..+. +..+ ...++..+...+...| ++++|...++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~ 211 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLG---------------------------------------NFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------------------BHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcc---------------------------------------CHHHHHHHHH
Confidence 666532 1111 1234555555555555 8888888888
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHh-H-HHHHHHHHccCChHHHHHHHH
Q 048778 752 RIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGV----FPAKA-I-TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 752 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~-~-~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++..+.. ..++..++..|...|++++|+..++++.+... .+... . ..++.+|...|++++|..+++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 877664221 23778888888888888888888888765211 11112 2 677888888888888888888
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-cchhHHHHHHHHhcCCcH
Q 048778 820 LILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IE-EKAAVLPYIEFLLTGDEL 881 (902)
Q Consensus 820 ~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~ 881 (902)
++.+. +-.+. ..++..++.+|...|++++|...++++++... .+ ....+..+...+...|+.
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 87742 11111 35677788888888888888888888765421 11 133455566666665554
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=6.5e-13 Score=145.35 Aligned_cols=268 Identities=15% Similarity=0.103 Sum_probs=170.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPSV----VTYTILVDGLFRAGNIALAMSMIEVMKLA----GC-PPNVHTYTVI 624 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l 624 (902)
+...+...|++++|...|+++++.... +. ..|..+...|...|++++|...++++.+. +. +....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555555555555555543211 21 34555566666666666666666655442 10 1123456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDL----G-VSPNHITYSILVRAHASTGR-----------------LDHAFKIVSFMVAN 682 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~ 682 (902)
...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777777666532 1 01124466677777777777 77777777766542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC
Q 048778 683 ----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757 (902)
Q Consensus 683 ----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 757 (902)
+..+ ...++..+...+...| ++++|.+.++++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLG---------------------------------------DFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcC---------------------------------------ChHHHHHHHHHHHHHH
Confidence 1111 1235555666666666 8888888888887765
Q ss_pred CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--c--h-HhH-HHHHHHHHccCChHHHHHHHHHHHHc-
Q 048778 758 GST------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF--P--A-KAI-TSIIGCYCKERKYDDCLEFMNLILES- 824 (902)
Q Consensus 758 ~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~-~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~- 824 (902)
+.. ..++..++..|...|++++|+..++++++.... . . ... ..++.+|...|++++|..+++++++.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 322 237888899999999999999999888763210 0 1 122 78888899999999999999988742
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 825 ---GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 825 ---~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+..+ ...++..++.+|...|++++|..+++++++...
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 135778888999999999999999999876653
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=6.7e-13 Score=140.56 Aligned_cols=290 Identities=11% Similarity=0.006 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL----GVSP-NHITY 656 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~ 656 (902)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +-.| ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344556677777777777777777653 223 346667777777788888888777776532 1111 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+..++...... .....
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~ 153 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT-------------GEFPE 153 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-----------------CCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh-------------hhhhh
Confidence 7788888888999998888888765210 112 23566666666666621110000000 00000
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchH-h-H-H
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPAK-A-I-T 799 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~-~-~ 799 (902)
-....+++|.+.++++++.. +....++..++..+...|++++|+..++++.+... .+.. . . .
T Consensus 154 ------~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 154 ------DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00002888888888876542 33356788999999999999999999999875321 1111 1 2 7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CcchhHH
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-----EEKAAVL 869 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 869 (902)
.++.+|...|++++|..+++++.+. +..+ ...++..++.++...|++++|...++++++.... .....+.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8889999999999999999998742 1111 1467788999999999999999999998765221 1133677
Q ss_pred HHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 870 PYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 870 ~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.++..+.+.|++++|.+.+++..+..
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 88889999999999999999987653
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=1.1e-09 Score=124.25 Aligned_cols=218 Identities=8% Similarity=-0.001 Sum_probs=131.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM-SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
+..+|++.+.. ++-+...|-..+.-+...|+.++|. ++|++.... ++.+...|...+......|++++|..+|++++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556555543 2335566666666666666666665 777776653 34455556666666666777777777777666
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 646 DLG---------VSPN------------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 646 ~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
+.. -.|+ ...|...+....+.|+.+.|..+|.++++.-......+|...+..-.+.+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~-- 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS-- 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT--
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC--
Confidence 421 0121 23566666666677777777777777776401112233322222222222
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
++.+.|.++|+..++..|.++..|...+......|+.+.|..+|
T Consensus 484 ------------------------------------~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 484 ------------------------------------KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp ------------------------------------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 15777777877777777777777777777777777778888888
Q ss_pred HHHHHcCCCc-hHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 785 KDIMKSGVFP-AKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 785 ~~~~~~~~~p-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
++++.....+ .... ...+..-...|+.+.+.++.+++.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777644321 1111 55555556677777777777777764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=2.7e-12 Score=122.49 Aligned_cols=167 Identities=8% Similarity=-0.063 Sum_probs=142.0
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK 807 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~ 807 (902)
..|..++..+.+.|++++|++.|+++++.+|.++.+|..++..|.+.|++++|+..++++.............++..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 34444555555555999999999999999999999999999999999999999999999998554333333888899999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDL 887 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 887 (902)
.+++++|...++++.+.. ..+...+..++.++.+.|++++|++.++++++..+. +...|..++..+.+.|++++|++.
T Consensus 86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998752 335688899999999999999999999999887643 466788999999999999999999
Q ss_pred HHHHHhcCc
Q 048778 888 LNLIDQVHY 896 (902)
Q Consensus 888 l~~~~~~~~ 896 (902)
+++..+...
T Consensus 164 ~~~al~~~p 172 (184)
T 3vtx_A 164 FKKALEKEE 172 (184)
T ss_dssp HHHHHHTTH
T ss_pred HHHHHhCCc
Confidence 999887653
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=1.5e-12 Score=144.42 Aligned_cols=220 Identities=14% Similarity=-0.018 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRF-KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIV 676 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 676 (902)
.+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|.+.+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777777766543 45778889999999999999 99999999998764 456889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 677 SFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 677 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
+++++ +.|+...+..+...+...+. +....+.|++++|.+.|+++++.
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~------------------------------~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQT------------------------------DSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCC------------------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhcc------------------------------CChhhhhhhHHHHHHHHHHHHHh
Confidence 99997 46777888888888877610 00111223999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCc---hHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 757 GGSTTDFYNFLVVELCRA--------GRIVEADRIMKDIMKSGVFP---AKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p---~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+|.+..+|..++.+|... |++++|+..|+++++. .| +... ..++.+|...|++++|...++++.+
T Consensus 209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999984 56 4444 8999999999999999999999998
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 824 SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 824 ~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
. .|+ ...+..++.++...|++++|++.+++
T Consensus 287 l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 287 L--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred h--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 454 57888999999999999999987655
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=9e-12 Score=118.77 Aligned_cols=166 Identities=18% Similarity=0.109 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+..+|..+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555542 3344455555555555555555555555555432 333444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
.+...++++.|...+.+..+. .+.+...+..+...+.+.|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g--------------------------------------- 121 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMG--------------------------------------- 121 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT---------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhC---------------------------------------
Confidence 555555555555555555542 1223444445555555555
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|++.|+++++.+|.++.+|..++..|.+.|++++|++.|+++++
T Consensus 122 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.5e-09 Score=123.15 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 531 EALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEY-AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 531 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
.+..+|++.+.. .+..+..|...+..+...|+.++|. .+|++.... ++.+...|-..+...-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567766654 3346677777777777778888886 888887763 3446666777777778888888888888887
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-
Q 048778 610 KLAG---------CPPN------------VHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHAST- 666 (902)
Q Consensus 610 ~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~- 666 (902)
.+.. ..|+ ..+|...++...+.|..+.|..+|..+.+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 7531 0132 236777788888889999999999999875 2 22334444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
++.+.|.++|+..++. .+.+...|...+......| +.+.|
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~---------------------------------------~~~~A 523 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN---------------------------------------EESQV 523 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT---------------------------------------CHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC---------------------------------------CHHHH
Confidence 4589999999999885 4446667777777777777 99999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 747 FRLRDRIESCGG---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 747 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
..+|++++...| .....|...+..-.+.|+.+.+..+.+++.+.. |+... ..+++=|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 999999998875 255788888888899999999999999999854 54433 4444333
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1e-11 Score=134.31 Aligned_cols=229 Identities=7% Similarity=-0.059 Sum_probs=171.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHH
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVSP----NHITYS 657 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~ 657 (902)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++..+. .... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678889999999999998763 1111 2357888889999999999999999988742 1111 145788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQ-LN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
.+..+|...|++++|...+++.++.... ++ ..++..+...|...|
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g------------------------------ 238 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS------------------------------ 238 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC------------------------------
Confidence 8899999999999999999998753111 11 236666777777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHhH--HHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIES-----CG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPAKAI--TSI 801 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~--~~l 801 (902)
++++|.+.++++++ .+ |....++..++..|...|++++|...++++++... .|.... ..+
T Consensus 239 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 239 ---------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988 45 66678899999999999999999999999876321 122222 567
Q ss_pred HHHHHccCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERK---YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+..|...|+ +++|+.++++. +..|+ ...+..++.+|...|++++|..+++++++.
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888 77777777765 22343 367778889999999999999999988654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.4e-12 Score=138.13 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=174.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTYTVI 624 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l 624 (902)
....+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +..| ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455556666666666665553211 2 245556666666666777666666665431 1111 23456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSILVRAHASTGR--------------------LDHAFKIVSFM 679 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m 679 (902)
...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777777653210 112 3366777777778888 78887777776
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 680 VAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 680 ~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.+. +..+ ...++..+...+...| ++++|.+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLG---------------------------------------NFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHT---------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhC---------------------------------------CHHHHHHHHHHHH
Confidence 542 1111 1234555555666666 8899998888887
Q ss_pred hcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---c-h-HhH-HHHHHHHHccCChHHHHHHHHHHH
Q 048778 755 SCGGS------TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---P-A-KAI-TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 755 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-~-~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+..+. ...++..++..+...|++++|+..++++.+.... + . ... ..++.+|...|++++|..+++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66421 1337889999999999999999999998753211 1 1 112 778899999999999999999887
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 823 ES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 823 ~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+. +-.+ ...++..++.++.+.|++++|...++++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 52 1111 13577889999999999999999999987664
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=4.8e-11 Score=124.29 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHA-------STGRL-------DHAFKIVSFMVANGCQL-NSNVYSALLAGLV 699 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~ 699 (902)
++|...|++++... +.+...|..++..+. +.|++ ++|..++++.++. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67778888887653 556777777777765 35776 8999999999973 355 5568888888888
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD-FYNFLVVELCRAGRIV 778 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 778 (902)
+.| ++++|.++|+++++..|.+.. +|..++..+.+.|+++
T Consensus 111 ~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 111 SRM---------------------------------------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HTT---------------------------------------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred hcC---------------------------------------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHH
Confidence 888 999999999999998888876 8999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAKAITSIIGCYC---KERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
+|..+|+++++.. |+.....+..++. ..|++++|..+++++++. .| +...|..++..+.+.|+.++|..+|+
T Consensus 152 ~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 152 SGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999854 4333322222332 379999999999999875 34 56888899999999999999999999
Q ss_pred HHHhCC-CCC--cchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 855 DLFRYN-GIE--EKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 855 ~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
++++.. ..| ....|..++..+.+.|+.++|..+++++.+....
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 998863 344 3567888888888999999999999998876543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.2e-11 Score=131.66 Aligned_cols=229 Identities=8% Similarity=-0.063 Sum_probs=176.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLG-VSPN----HITYSILVRAHASTGRLDHAFKIVSFMVAN--GC---QL-NSNVYS 692 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~~-~~~~~~ 692 (902)
....+...|++++|+..+++..+.- -.++ ..++..+...|...|++++|...+++..+. .. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5667788999999999999998631 0122 467889999999999999999999998863 11 11 134666
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC--C----CHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG--S----TTDFYNF 766 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~ 766 (902)
.+...|...| ++++|.+.++++++..+ + ...++..
T Consensus 189 ~lg~~~~~~g---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 189 LFATNFLDLK---------------------------------------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc---------------------------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777777 99999999999987742 2 2357899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC---CCCC-HHHHHHH
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG---FVPS-FESHCTV 836 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l 836 (902)
++..|...|++++|++.++++++. +..|.... ..++.+|...|++++|..+++++.+.. -.|. ...+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999862 22244433 899999999999999999999988521 0222 2345678
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 837 IQGLQSEGR---NKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 837 ~~~l~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+.++...|+ .++|+.++++. +..+. ...+..++..+.+.|++++|.+.+++..+-
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999 89999998884 33322 345667888999999999999999988653
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.2e-12 Score=141.67 Aligned_cols=211 Identities=10% Similarity=-0.067 Sum_probs=181.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCcccc
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL-DHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
.+++++..+++..... +.+...+..+..++...|++ ++|++.++++++. .| +...|..+...|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g-------- 151 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKG-------- 151 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC--------
Confidence 3667777787776543 45788999999999999999 9999999999984 44 5788888998898888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---------CCHHHHH
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA---------GRIVEAD 781 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~ 781 (902)
++++|.+.|+++++.+|. ..++..++..|... |++++|+
T Consensus 152 -------------------------------~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 152 -------------------------------DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp -------------------------------CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 999999999999999876 79999999999999 9999999
Q ss_pred HHHHHHHHcCCCchHhH--HHHHHHHHcc--------CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHH
Q 048778 782 RIMKDIMKSGVFPAKAI--TSIIGCYCKE--------RKYDDCLEFMNLILESGFVP----SFESHCTVIQGLQSEGRNK 847 (902)
Q Consensus 782 ~~~~~~~~~~~~p~~~~--~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~l~~~g~~~ 847 (902)
+.|+++++. .|+... ..++.+|... |++++|+..++++++. .| +...|..++.+|...|+++
T Consensus 200 ~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 200 RQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999994 465544 8899999988 9999999999999985 45 5689999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 848 QAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+|+..++++++..+. +...+..+...+...|++++|++.+.++
T Consensus 276 ~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 276 EALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999887644 4556788889999999999998765443
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=1.1e-10 Score=121.65 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLC-------QRGRF-------KEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
++|..+|++++... +.+...|..++..+. +.|++ ++|...|++.++.--+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555554431 334444444444443 23443 5555555555542012234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLN-SN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
.|++++|..+|+++++ +.|+ .. +|..++..+.+.| ++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~---------------------------------------~~ 150 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAE---------------------------------------GI 150 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHH---------------------------------------CH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhc---------------------------------------CH
Confidence 5555555555555554 2332 22 4555554444444 55
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELC-RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
++|..+|+++++.+|.+...|...+.... ..|++++|..+|+++++. .|+... ..++..+...|++++|..++++
T Consensus 151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555555555444443333322 245555555555555552 233222 4555555555555555555555
Q ss_pred HHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 821 ILESG-FVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 821 ~~~~~-~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+++.. +.|+ ...|..++..+.+.|+.++|..+++++++.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55531 2332 244555555555556666666555555444
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.7e-12 Score=133.18 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-------GCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL------GV 649 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 649 (902)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777777888888888888777662 22334456777888888888888888888887643 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 650 -SPNHITYSILVRAHASTGRLDHAFKIVSFMVAN------GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 650 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
+.....+..+...|...|++++|...++++.+. +..| ....+..+...+...|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------- 167 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------------------- 167 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-------------------
Confidence 223567888888999999999999999988763 2222 3456667777777777
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG-- 791 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 791 (902)
++++|.+.++++++. .|....++..++..|...|++++|++.++++++..
T Consensus 168 --------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 168 --------------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999887 45567789999999999999999999999998631
Q ss_pred -----CCchHhH--------HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 792 -----VFPAKAI--------TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 792 -----~~p~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+.... ..+...+...+.+.+|...++..... .| ...++..++.+|.+.|++++|+.++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111100 22333445566677777777776643 34 34777788888888888888888888876
Q ss_pred hC
Q 048778 858 RY 859 (902)
Q Consensus 858 ~~ 859 (902)
+.
T Consensus 306 ~l 307 (311)
T 3nf1_A 306 RS 307 (311)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.4e-11 Score=128.75 Aligned_cols=203 Identities=16% Similarity=0.115 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVAN-------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
..++..+...+...|++++|..+++++.+. ........+..+...+...|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------------------- 83 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------------- 83 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------------------
Confidence 567778888888888888888888888762 12223456777777787877
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS------G 791 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 791 (902)
++++|...++++++. .+....++..++..|...|++++|+..++++++. +
T Consensus 84 ----------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 84 ----------------KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998876 2555778999999999999999999999999874 2
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES------GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-- 860 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-- 860 (902)
..|.... ..++.+|...|++++|..+++++.+. +..|. ...+..++.++...|++++|+.+++++++..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2344443 88899999999999999999999863 22333 3678889999999999999999999987631
Q ss_pred ----------------------------------------------CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 861 ----------------------------------------------GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 861 ----------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.......+..++..+.+.|++++|++.+++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1223456778889999999999999999988754
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=8.8e-12 Score=143.40 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=137.5
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+.+.|++++|++.|+++++.+|.+..+|..|+.+|.+.|++++|++.|+++++ +.|+... ..++.+|...|+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~~~g~~~ 94 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDVQ 94 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333333999999999999999999999999999999999999999999999999 5576655 99999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 813 DCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+|++.++++++. .|+ ...|..++.+|.+.|++++|++.|+++++..+. +...+..++..+...|+|++|++.++++
T Consensus 95 ~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 95 GALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 999999999985 564 589999999999999999999999999888643 4567889999999999999999999887
Q ss_pred Hhc
Q 048778 892 DQV 894 (902)
Q Consensus 892 ~~~ 894 (902)
.+.
T Consensus 172 l~l 174 (723)
T 4gyw_A 172 VSI 174 (723)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=2e-10 Score=123.77 Aligned_cols=229 Identities=9% Similarity=0.003 Sum_probs=164.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---C-CHHHH
Q 048778 588 ILVDGLFRAGNIALAMSMIEVMKLAG-CPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVS---P-NHITY 656 (902)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p-~~~~~ 656 (902)
.....+...|++++|+..|+++.+.- -.++ ..++..+...|...|++++|+..+++..+. ... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34455678899999999999887631 0122 347788888899999999999999888742 111 1 24577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+..+|...|++++|.+.+++.++. +..+ ...++..+...|...|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~----------------------------- 236 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG----------------------------- 236 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----------------------------
Confidence 88899999999999999999888752 1111 1235556666666666
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---chHhH--HHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIES-----CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---PAKAI--TSI 801 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~--~~l 801 (902)
++++|.+.++++++ .+|....++..++..|.+.|++++|...++++++.... |.... ..+
T Consensus 237 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 237 ----------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999988887 55666788888999999999999999999888764321 22222 566
Q ss_pred HHHHHccCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 802 IGCYCKERK---YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 802 ~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
...|...|+ +.+|+.++++. +..|+ ...+..++..|...|++++|..+++++++
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777 77777777662 22333 35667788888888888888888888754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=5.7e-10 Score=120.10 Aligned_cols=228 Identities=7% Similarity=-0.113 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLG-VSPN----HITYSILVRAHASTGRLDHAFKIVSFMVAN--GC---QL-NSNV 690 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~~-~~~~ 690 (902)
......+...|++++|+..+++..+.. -.++ ..++..+..+|...|++++|...+++..+. .. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 344556778999999999999998531 1133 457888999999999999999999998763 11 11 1346
Q ss_pred HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHH
Q 048778 691 YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFY 764 (902)
Q Consensus 691 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 764 (902)
+..+...|...| ++++|.+.++++++.. +....++
T Consensus 185 ~~~lg~~y~~~~---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 185 LFVIAGNYDDFK---------------------------------------HYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC---------------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777 9999999999988763 1224578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCC---CCC-HHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMK-----SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGF---VPS-FESH 833 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~ 833 (902)
..++..|...|++++|++.++++++ .. |.... ..++.+|.+.|++++|..++++..+..- .|. ...+
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999986 33 33333 8999999999999999999999986321 222 2456
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 834 CTVIQGLQSEGR---NKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 834 ~~l~~~l~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..+...+...|+ .++|+.++++ .+..++ ...+..++..+.+.|++++|.+.+++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667778888888 8999998887 232222 34566788889999999999999988764
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=4.2e-11 Score=137.81 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|++.|+++++.+|.+..+|..|+..|.+.|++++|++.|+++++ +.|+... ..++.+|...|++++|++.++
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555554 2333332 445555555555555555555
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 820 LILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 820 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
++++. .|+ ...+..++.+|...|++++|.+.+++++
T Consensus 136 ~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 136 TALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 55542 332 3444555555555555555555555443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=5.8e-10 Score=110.36 Aligned_cols=194 Identities=10% Similarity=0.015 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALL 695 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 695 (902)
|...+......+...|++++|+..|++..+..-+++...+..+..++...|++++|++.+++.++. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666777777777777777777776542256666666777777777777777777777763 44 345666666
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH-------HHHHHHH
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT-------DFYNFLV 768 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~ 768 (902)
..+...| ++++|.+.++++++..|.+. ..|..++
T Consensus 84 ~~~~~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 124 (228)
T 4i17_A 84 AAYRDMK---------------------------------------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG 124 (228)
T ss_dssp HHHHHTT---------------------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcc---------------------------------------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh
Confidence 6777776 78888888888887777777 5577778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCch--HhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPA--KAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEG 844 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g 844 (902)
..+...|++++|++.|+++++ ..|+ ... ..++.+|... +..+++++...+ ..+...|... .....|
T Consensus 125 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~--~~~~~~ 194 (228)
T 4i17_A 125 QKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASE--KAKADA 194 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHH--HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHH--HHHHHH
Confidence 888888888888888888877 4566 433 6667777543 334445554432 2223333222 233456
Q ss_pred CHHHHHHHHHHHHhCCC
Q 048778 845 RNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 845 ~~~~A~~~~~~~~~~~~ 861 (902)
.+++|+..++++++..+
T Consensus 195 ~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 68888888888877653
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=5.2e-10 Score=110.74 Aligned_cols=208 Identities=11% Similarity=-0.024 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
.|...+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677778888888999999999999988886533777888888889999999999999999998764 34577888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH-------HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQL-NSNV-------YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
.+|...|++++|+..+++.++. .| +... |..+...+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~------------------------------ 131 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAG------------------------------ 131 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhc------------------------------
Confidence 9999999999999999999874 44 4433 444444444444
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~ 810 (902)
++++|.+.|+++++.+|. +..+|..++..|...|+ ..++++...+ +..............+.
T Consensus 132 ---------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 195 (228)
T 4i17_A 132 ---------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA--SSNKEKYASEKAKADAA 195 (228)
T ss_dssp ---------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT--TTCHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc--cCCHHHHHHHHHHHHHH
Confidence 999999999999999999 88999999999976654 4445555432 22222112222345567
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
+++|+.+++++.+. .|+ ......+..+
T Consensus 196 ~~~A~~~~~~a~~l--~p~~~~~~~~l~~i 223 (228)
T 4i17_A 196 FKKAVDYLGEAVTL--SPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 89999999999985 564 3555444443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2.8e-10 Score=108.29 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------- 56 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTG-------------------------------- 56 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcC--------------------------------
Confidence 3445555556666666666666655542 1224455555555555555
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
++++|.+.++++++..|.+...+..++..+...|++++|.+.++++.+.. |+... ..++.+|...|+++
T Consensus 57 -------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 57 -------AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred -------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHH
Confidence 66666666666666666666666666666666666666666666666532 32222 55666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 813 DCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+|..+++++.+.. ..+...+..++.++...|++++|...++++++.
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666542 223456666666666667777777776666544
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=5.4e-10 Score=106.24 Aligned_cols=162 Identities=15% Similarity=0.048 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 3344455555555555555555555555555432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
.|++++|.+.++++.+. .+.+...+..+...+...| ++++
T Consensus 89 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~---------------------------------------~~~~ 128 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLG---------------------------------------RFDE 128 (186)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT---------------------------------------CHHH
T ss_pred hcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcC---------------------------------------cHHH
Confidence 55555555555555442 1223344444444444444 5555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
|.+.++++++..|.+..++..++..+...|++++|...++++.+
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555443
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=1e-09 Score=117.90 Aligned_cols=266 Identities=9% Similarity=-0.031 Sum_probs=186.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSIL 659 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l 659 (902)
....+...|++++|...+++.....-..+. .+++.+...+...|++++|...+++.....- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344566778888888888887765322222 2456666778888899998888888764210 112 2335677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVAN----GCQ--L-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+...|++++|...+++..+. +.. | ....+..+...+...|
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------------------------ 149 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA------------------------------ 149 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc------------------------------
Confidence 88889999999999999988753 221 2 2335555666777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HhH-H---H
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGS-----TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA---KAI-T---S 800 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~-~---~ 800 (902)
++++|...+++.++..+. ...++..++..+...|++++|...++++......++ ... . .
T Consensus 150 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 150 ---------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 999999999998877532 245788899999999999999999999875422221 111 1 3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCcc-hhHHHHH
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IEEK-AAVLPYI 872 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~~~-~~~~~l~ 872 (902)
.+..+...|++++|..++++..+....+. ...+..++.++...|++++|...+++++.... .++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 44557899999999999998875321111 23466788899999999999999999765421 1122 2455667
Q ss_pred HHHhcCCcHhHHHHHHHHHHh
Q 048778 873 EFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 873 ~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..+...|++++|...+++...
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 778889999999999888764
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=3e-09 Score=114.29 Aligned_cols=264 Identities=13% Similarity=0.076 Sum_probs=156.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHH
Q 048778 557 VLCKENKLKEEYAMFGKILKFGLVPSV----VTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNV----HTYTVIING 627 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~li~~ 627 (902)
.+...|++++|...+++........+. ..++.+...+...|++++|.+.+++.....- .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555555543211121 1344455556666777777776666554110 1111 234556666
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFD----LGVS--PN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQ--L--NSNVYSALLA 696 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~----~g~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~l~~ 696 (902)
+...|++++|...+++..+ .+.. |. ...+..+...+...|++++|...+++..+.... + ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777777653 2221 22 345556777777888888888888777653211 1 1234445555
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHHH-----HHHH
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFYN-----FLVV 769 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-----~l~~ 769 (902)
.+...| ++++|...++++.... +.+...+. .++.
T Consensus 183 ~~~~~g---------------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 183 CSLARG---------------------------------------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHHT---------------------------------------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHcC---------------------------------------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 555555 8888888888877653 22211222 2334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH---hH-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAK---AI-TSIIGCYCKERKYDDCLEFMNLILES----GFVPSF-ESHCTVIQGL 840 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~l 840 (902)
.+...|++++|...++++......+.. .. ..++..+...|++++|...++++.+. +..++. ..+..++.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 477888888888888887653321111 12 56777888888888888888877632 211222 3666677788
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 048778 841 QSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~ 859 (902)
...|+.++|...+++++..
T Consensus 304 ~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 8888888888888887644
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=2.5e-10 Score=117.17 Aligned_cols=225 Identities=12% Similarity=0.029 Sum_probs=155.0
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 048778 630 QRGRFKEAEMLLFKMFD-------LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN------GCQL-NSNVYSALL 695 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l~ 695 (902)
..|++++|+.++++..+ ...+....++..+...|...|++++|...++++++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566666666655543 121223667888888999999999999999888763 2223 345677777
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFL 767 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 767 (902)
..+...| ++++|.+.++++++. .|....++..+
T Consensus 93 ~~~~~~g---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 133 (283)
T 3edt_B 93 VLYGKRG---------------------------------------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL 133 (283)
T ss_dssp HHHHTTT---------------------------------------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhc---------------------------------------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 7888887 999999999999887 35567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCH-H
Q 048778 768 VVELCRAGRIVEADRIMKDIMKS------GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES-------GFVPSF-E 831 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-~ 831 (902)
+..|...|++++|+..++++++. +-.|.... ..++.+|...|++++|..+++++.+. ...+.. .
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP 213 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH
Confidence 99999999999999999999874 11454444 88999999999999999999999853 122322 4
Q ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 832 SHCTVIQGLQSEGR------NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 832 ~~~~l~~~l~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.+..+.......+. +.++...++.... ........+..++..+...|++++|++.+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444333 3344433333210 11122446778889999999999999999988653
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=3.8e-10 Score=115.80 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 664 ASTGRLDHAFKIVSFMVAN-------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
...|++++|+.++++.++. ..+....++..+...+...|
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------------------- 57 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---------------------------------- 57 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc----------------------------------
Confidence 4567888888888877652 11223556777777787877
Q ss_pred hhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCchHhH--HH
Q 048778 737 FLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS------GVFPAKAI--TS 800 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~--~~ 800 (902)
++++|...++++++. .|....++..++..|...|++++|++.++++++. .-.|+... ..
T Consensus 58 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 58 -----KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999999999999876 2556778999999999999999999999999874 11344444 88
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILES------GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.+|...|++++|..+++++.+. +-.|. ..++..++.++...|++++|+.+++++++.
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864 11333 477889999999999999999999998764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=7.5e-10 Score=114.12 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchH-------hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---
Q 048778 763 FYNFLVVELCRA-GRIVEADRIMKDIMKSGVFPAK-------AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSF--- 830 (902)
Q Consensus 763 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~-------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 830 (902)
++..++..|... |++++|++.|+++++. .|+. .. ..++..|...|++++|+..++++.+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 444555555553 5555555555555441 1211 11 44455555555555555555555542111110
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ---ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ---~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
..|..++.++...|++++|+..++++++
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1334444555555555555555555443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.9e-09 Score=107.85 Aligned_cols=119 Identities=9% Similarity=-0.071 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN-SNV 690 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~ 690 (902)
.+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|+..+++.++... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455666777777888888888888888887653 223 56777888888888888888888888887411 112 345
Q ss_pred HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 048778 691 YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNF 766 (902)
Q Consensus 691 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 766 (902)
+..+..++...+. ......|++++|...|+++++..|.+......
T Consensus 92 ~~~lg~~~~~~~~-------------------------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 92 EYERAMCYYKLSP-------------------------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHHHHHHCC-------------------------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHhcc-------------------------------cccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 5556666665210 00001339999999999999999888766633
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=1.6e-09 Score=109.82 Aligned_cols=167 Identities=11% Similarity=0.123 Sum_probs=134.1
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHhH--HHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF-PAKAI--TSI 801 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~--~~l 801 (902)
+.+...+..+.+.|++++|...|+++++..|.+ ..++..++.+|.+.|++++|+..|+++++..+. |.... ..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 344455555556669999999999999998888 889999999999999999999999999985432 22222 788
Q ss_pred HHHHHc--------cCChHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 048778 802 IGCYCK--------ERKYDDCLEFMNLILESGFVPS-FESH-----------------CTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 802 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+.++.. .|++++|+..++++++. .|+ .... ..++.+|.+.|++++|+..+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888988 99999999999999975 343 2222 5678999999999999999999
Q ss_pred HHhCCCCC--cchhHHHHHHHHhcC----------CcHhHHHHHHHHHHhcCc
Q 048778 856 LFRYNGIE--EKAAVLPYIEFLLTG----------DELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 856 ~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~l~~~~~~~~ 896 (902)
+++..+.. ....+..++.++... |++++|+..++++.+...
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 98775432 234677788888765 999999999999987653
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1.4e-09 Score=112.13 Aligned_cols=189 Identities=14% Similarity=0.045 Sum_probs=132.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 048778 627 GLCQRGRFKEAEMLLFKMFDL----GVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLA 696 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~ 696 (902)
.|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|+..+++.++. |-.. ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777776666532 21111 456777777888888888888888777652 1000 1235666666
Q ss_pred HHHhc-CCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 048778 697 GLVSS-NKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVV 769 (902)
Q Consensus 697 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~ 769 (902)
.|... | ++++|+..|+++++..|.+ ..++..++.
T Consensus 126 ~~~~~lg---------------------------------------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 126 ILENDLH---------------------------------------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHHTTC---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhc---------------------------------------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 77664 7 9999999999999886433 457899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHh------H-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKA------I-TSIIGCYCKERKYDDCLEFMNLILESGFVPSF------ESHCTV 836 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 836 (902)
.|...|++++|+..|+++.+..+..... . ..++.++...|++++|...+++.++. .|+. ..+..+
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHH
Confidence 9999999999999999999854333221 3 67788999999999999999999763 4542 123445
Q ss_pred HHHHH--hcCCHHHHHHHHHHH
Q 048778 837 IQGLQ--SEGRNKQAKNLVSDL 856 (902)
Q Consensus 837 ~~~l~--~~g~~~~A~~~~~~~ 856 (902)
+..+. ..+++++|+..|+++
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHhccC
Confidence 55553 457799999999875
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=2.6e-09 Score=103.74 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC--hHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK--YDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~--~~~A~~~ 817 (902)
++++|...|+++++.+|.+..+|..++..|...|++++|+..|+++++ +.|+... ..++.+|...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555555555555555555555666666666655555 3343333 455555544332 2233333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.+.. ..|....+...+.++...|++++|+..++++++.
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333321 1122223333444555556666666666665443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=4.3e-10 Score=102.54 Aligned_cols=141 Identities=12% Similarity=-0.041 Sum_probs=115.7
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|+..+++.....|.++..+..++..|.+.|++++|++.|+++++ +.|+... ..++.+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3444566999999999999988888899999999999999999999999999999 5576655 89999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCcchhHHHHHHHHhcCCc
Q 048778 813 DCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNL-VSDLFRYNGIEEKAAVLPYIEFLLTGDE 880 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (902)
+|+..++++++. .| +...|..++.+|.+.|++++|... ++++++..+. ++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 999999999985 56 468899999999999999876654 6888777543 34455555555555664
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=4.3e-09 Score=102.11 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQG 839 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 839 (902)
.+..++..|...|++++|+..|+++++. .|+... ..++.+|...|++++|+..++++++. .| +..++..++.+
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4566899999999999999999999994 465554 89999999999999999999999985 56 46888899988
Q ss_pred HHhcCC--HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 840 LQSEGR--NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 840 l~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
|...|+ .+++...++++. ...|....+...+.++...|++++|+..+++..+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 877665 455666666653 2333344556677788889999999999999877643
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=5e-09 Score=103.21 Aligned_cols=168 Identities=7% Similarity=-0.004 Sum_probs=131.6
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~~l~ 802 (902)
.+...+..+...|++++|...|+++++..|.+ ..++..++.+|.+.|++++|+..|+++++..+..... . ..++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455566667779999999999999987665 3689999999999999999999999999855432221 2 5556
Q ss_pred HHHHc------------------cCChHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHhcCCH
Q 048778 803 GCYCK------------------ERKYDDCLEFMNLILESGFVPSF-ESH-----------------CTVIQGLQSEGRN 846 (902)
Q Consensus 803 ~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~l~~~g~~ 846 (902)
.++.. .|++++|+..++++++. .|+. ..+ ..++..|.+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 55554 67999999999999975 4542 222 3567788999999
Q ss_pred HHHHHHHHHHHhCCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCccc
Q 048778 847 KQAKNLVSDLFRYNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYRQ 898 (902)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~~ 898 (902)
++|+..++++++..+... ...+..++.++.+.|++++|++.++.+...+..-
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999987754322 3467788999999999999999999998877543
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.2e-09 Score=102.87 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=130.6
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH-H
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC-Y 805 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~-~ 805 (902)
+.+...+..+...|++++|...|+++++.+|.+...+..++..+...|++++|+..++++.+.. |+... ..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3445556667777899999999999999999999999999999999999999999999998744 42222 222222 2
Q ss_pred HccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cchhHHHHHHHHhcCCcHhH
Q 048778 806 CKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-EKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 883 (902)
...+...+|+..++++++. .| +...+..++.++...|++++|+..++++++..+.+ +...+..++..+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333445689999999875 56 46889999999999999999999999998887654 35578889999999999999
Q ss_pred HHHHHHHHHh
Q 048778 884 SIDLLNLIDQ 893 (902)
Q Consensus 884 a~~~l~~~~~ 893 (902)
|+..+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.6e-09 Score=125.57 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=147.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 664 ASTGRLDHAFKIVSFMV--------ANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
...|++++|++.+++++ +. .+.+...+..+...+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g--------------------------------- 447 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLG--------------------------------- 447 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHT---------------------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcC---------------------------------
Confidence 66788888988888887 32 2335667777888888888
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
++++|.+.|+++++.+|.+..+|..++.+|...|++++|++.|+++++ ..|+... ..++.+|...|++++
T Consensus 448 ------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 448 ------DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp ------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred ------CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH
Confidence 999999999999999999999999999999999999999999999999 4566555 899999999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCc--------HhHH
Q 048778 814 CLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDE--------LGKS 884 (902)
Q Consensus 814 A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a 884 (902)
++.++++++. .| +...|..++.+|.+.|++++|++.++++++.... +...|..++.++...|+ +++|
T Consensus 520 -~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 520 -HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp -TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred -HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9999999985 45 4588999999999999999999999998655432 35567777888776554 5555
Q ss_pred HHHHHHH
Q 048778 885 IDLLNLI 891 (902)
Q Consensus 885 ~~~l~~~ 891 (902)
.+.++.+
T Consensus 596 ~~~l~~~ 602 (681)
T 2pzi_A 596 ARRVEAL 602 (681)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 5555433
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=4.2e-08 Score=98.37 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=134.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665543 44556666778888888899999988888876542 1355677788888999999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 646 DLGVSP-----NHITYSILVRA--HASTG--RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 646 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+......++.++.+.|
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g-------------- 225 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR-------------- 225 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT--------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC--------------
Confidence 74 56 35555556655 33334 899999999998763 455334444555777777
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC----------GGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|.+.++.+.+. +|.|+.++..++......|+ +|.+++++
T Consensus 226 -------------------------~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 226 -------------------------NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp -------------------------CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHH
Confidence 999999999987765 37889999888877777887 89999999
Q ss_pred HHHcCCCchHh
Q 048778 787 IMKSGVFPAKA 797 (902)
Q Consensus 787 ~~~~~~~p~~~ 797 (902)
+.+ ..|+..
T Consensus 279 L~~--~~P~hp 287 (310)
T 3mv2_B 279 LVK--LDHEHA 287 (310)
T ss_dssp HHH--TTCCCH
T ss_pred HHH--hCCCCh
Confidence 998 567765
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.1e-08 Score=90.97 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=81.4
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+...|++++|...++++++.+|.+...+..++..+...|++++|...++++.+.+ |+... ..++.++...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCH
Confidence 3344444477777777777777777777777777777777777777777777776643 33222 6666777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++|..+++++.+.. ..+...+..++.++...|++++|...++++++.
T Consensus 86 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777776542 223456666677777777777777777776544
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=5.1e-09 Score=107.36 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.+..++..|+..|...|++++|+..++++... .|+... ......+...++.++|...++
T Consensus 132 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 132 NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 9999999999999999999999999999999999999999999999874 455444 455555778889999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 820 LILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 820 ~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
++++. .| +...+..++.+|...|++++|+..++++++..+.. +...+..++..+...|+.++|...+++...
T Consensus 210 ~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 210 QQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99975 45 56889999999999999999999999998886543 356788999999999999999998887653
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.5e-07 Score=94.49 Aligned_cols=265 Identities=10% Similarity=0.051 Sum_probs=182.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 451 DGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTG 530 (902)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (902)
+-..-.|++..++.-...+.. ......-.-+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 344557888887773332221 22233334455778888877642 12234444444444433 322
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 531 EALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL-VPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 531 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677888877654 45566667888899999999999999999877553 235777888899999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 610 KLAGCPP-----NVHTYTVIINGL--CQRG--RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 610 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
.+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 875 56 355666666663 3334 899999999999765 4664444555558999999999999999776
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 681 AN-----GC---QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 681 ~~-----g~---~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
+. .. .| +..+...++......| + +|.++++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg---------------------------------------k--~a~~l~~ 277 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQG---------------------------------------L--DTEDLTN 277 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT---------------------------------------C--TTHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhC---------------------------------------h--HHHHHHH
Confidence 42 01 24 5566656666666667 6 7889999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++.+..|.++.... +.+....|+++..
T Consensus 278 qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 278 QLVKLDHEHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp HHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence 99999999986554 4555666666654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=1e-09 Score=100.06 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=108.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
|...+...|++++|+..++.... ..| +...+..+...|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~----------------------------------- 45 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAK----------------------------------- 45 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTT-----------------------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcC-----------------------------------
Confidence 44556667888888888888764 334 2345556777777777
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
++++|++.|+++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|+... ..++.+|.+.|++++|.
T Consensus 46 ----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 46 ----EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred ----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999999999999999999999999999999999988 4565544 88888899999988766
Q ss_pred HH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 048778 816 EF-MNLILESGFVP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 816 ~~-~~~~~~~~~~p-~~~~~~~l~~~l~~~g~ 845 (902)
.. ++++++. .| ++..|.....++...|+
T Consensus 120 ~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 120 KYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 55 5788774 56 45777777778877775
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.9e-09 Score=123.49 Aligned_cols=171 Identities=12% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 594 FRAGNIALAMSMIEVMK--------LAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 221 3344455555566666666666666666665442 3345555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVE 744 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (902)
.|++++|++.|+++++. .| +...+..+...+.+.| +++
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g---------------------------------------~~~ 518 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAG---------------------------------------NTD 518 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHT---------------------------------------CCC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC---------------------------------------ChH
Confidence 66666666666665542 23 3445555555555555 555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
+ .+.|+++++.+|.+..+|..++.+|.+.|++++|++.|+++++ ..|+... ..++.++...|+
T Consensus 519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 5 5556666655566666666666666666666666666666555 3344333 444555544444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=2.5e-08 Score=98.17 Aligned_cols=195 Identities=10% Similarity=-0.011 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SP-NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS----NVY 691 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~ 691 (902)
...+..+...+...|++++|+..|+++.+..- .| ....+..++.+|.+.|++++|+..++++++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 44556667778888888888888888876421 11 1356777788888888888888888888763 3322 123
Q ss_pred HHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh-------hhhhccHHHHHHHHHHHHhcCCCCHHHH
Q 048778 692 SALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN-------FLREMDVEHAFRLRDRIESCGGSTTDFY 764 (902)
Q Consensus 692 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 764 (902)
..+..++...+. ..... ....|+.++|...|+++++..|.+..++
T Consensus 82 ~~~g~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 82 YMRGLTNMALDD----------------------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHHHhhhh----------------------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 333333322220 00000 1124566777777777777666666554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCTVIQGL 840 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~l 840 (902)
..+...... ..... .....++..|...|++++|+..++++++. .|+ ...+..++.++
T Consensus 134 ~a~~~l~~~----------~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 134 DATKRLVFL----------KDRLA-------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHHHHH----------HHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHH-------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHH
Confidence 332211100 00000 00145677889999999999999999875 343 26788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.+.|++++|++.++++...++
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCCS
T ss_pred HHcCCcHHHHHHHHHHHhhCC
Confidence 999999999999998876654
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=1.3e-07 Score=96.21 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH-HH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGR------IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD-CL 815 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~-A~ 815 (902)
++++.++++++.+|.|..+|+.....+...|+ ++++++.+++++.. .|++.. +.+...+.+.|+..+ +.
T Consensus 164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHH
Confidence 55555555555555555555555555555444 55555555555552 233322 444444444444222 33
Q ss_pred HHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 816 EFMNLILESG-F-VPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 816 ~~~~~~~~~~-~-~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
.+.+++.+.+ . ..++..+..++++|.+.|+.++|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3444443211 0 1234555556666666666666666666654
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=1.2e-07 Score=96.27 Aligned_cols=221 Identities=7% Similarity=0.040 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCcCC
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG--RLDHAFKIVSFMVANGCQLNSNVYSALLAGL----VSSNKASG 706 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~~~~~~ 706 (902)
..++|+.++++++... +-+...|+.-..++...| ++++++++++.++.. .+-+..+|+.-...+ ...+.
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk~y~aW~~R~~iL~~~~~~l~~--- 122 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEKNYQIWNYRQLIIGQIMELNNN--- 122 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-CcccHHHHHHHHHHHHHHHHhccc---
Confidence 3468999999988764 445677888888888888 999999999999874 233556676555554 33310
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIV--EADRIM 784 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~ 784 (902)
.+++++++++++++++.+|.+..+|..-...+.+.|+++ ++++.+
T Consensus 123 ---------------------------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 123 ---------------------------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ---------------------------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 028899999999999999999999999999999999998 999999
Q ss_pred HHHHHcCCCchHhHHHHHHHHHccCC------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAITSIIGCYCKERK------YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRN-KQAKNLVSDL 856 (902)
Q Consensus 785 ~~~~~~~~~p~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~-~~A~~~~~~~ 856 (902)
+++++..+....+.+....++...|. +++++++++++++. .| +...|..+..++.+.|+. +++..+.+++
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99999554333333667777777776 99999999999975 45 568888898899998884 4466677776
Q ss_pred HhCC--CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 857 FRYN--GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 857 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
.+.+ ...+...+..+++.+.+.|+.++|+++++.+.+
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5443 123455677888999999999999999999986
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=5.3e-08 Score=94.61 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 048778 602 AMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG----RLDHAFKIVS 677 (902)
Q Consensus 602 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~ 677 (902)
|++.|++..+.| +...+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|+++++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444433 44444444444545555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHH
Q 048778 678 FMVA 681 (902)
Q Consensus 678 ~m~~ 681 (902)
+..+
T Consensus 78 ~A~~ 81 (212)
T 3rjv_A 78 KAVE 81 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=3.6e-08 Score=87.63 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
|..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444555555555555555554432 2334444445555555555555555555554421 2233444444444444
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.| ++++|.+.++++.+..|.+...+..++..+...|++++|
T Consensus 82 ~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 82 QG---------------------------------------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hc---------------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 44 555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 048778 781 DRIMKDIMK 789 (902)
Q Consensus 781 ~~~~~~~~~ 789 (902)
...++++.+
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=7.5e-08 Score=93.54 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCcccccccc
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSC 714 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 714 (902)
.+|...|++..+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|...| .+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g-~~--------- 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNP-QQ--------- 66 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSST-TS---------
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-CC---------
Confidence 35778888888764 77888889999999999999999999998754 4566666776666522 11
Q ss_pred CCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 048778 715 HSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKS 790 (902)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 790 (902)
.+.++|.+.|+++.+ +.++.++..|+..|.. .+++++|++.|+++.+.
T Consensus 67 --------------------------~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 67 --------------------------ADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp --------------------------CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred --------------------------CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 189999999999976 4678889999999887 88999999999999885
Q ss_pred CCCch-HhH-HHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 048778 791 GVFPA-KAI-TSIIGCYCK----ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-G-----RNKQAKNLVSDLFR 858 (902)
Q Consensus 791 ~~~p~-~~~-~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~ 858 (902)
+...+ ... ..|+.+|.. .+++++|+.+++++.+. ..+...+..++.+|... | +.++|+.+++++.+
T Consensus 119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 53211 222 888888888 78999999999999875 23455777788888653 3 89999999999887
Q ss_pred CCCC
Q 048778 859 YNGI 862 (902)
Q Consensus 859 ~~~~ 862 (902)
.+..
T Consensus 197 ~g~~ 200 (212)
T 3rjv_A 197 EGFD 200 (212)
T ss_dssp HTCH
T ss_pred cCCH
Confidence 7643
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=1.8e-08 Score=103.29 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL 695 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 695 (902)
.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|...++++.. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 344556666677777777777777777777653 44566777777777788888888877777765 345544332222
Q ss_pred H-HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048778 696 A-GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA 774 (902)
Q Consensus 696 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (902)
. .+...+ +.++|...++++++.+|.+...+..++..|...
T Consensus 192 ~~~l~~~~---------------------------------------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~ 232 (287)
T 3qou_A 192 QIELLXQA---------------------------------------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV 232 (287)
T ss_dssp HHHHHHHH---------------------------------------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhc---------------------------------------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 2 233334 666777888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
|++++|++.|+++++..+..+... ..++..|...|+.++|...+++.+
T Consensus 233 g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888877543332132 777777777777777777777654
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.1e-08 Score=116.56 Aligned_cols=151 Identities=7% Similarity=-0.026 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
|++++|.+.++++++.+|.+...|..++..|...|++++|++.++++++ ..|+... ..++.+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3778888888888887788888888888888888888888888888877 4455443 77788888888888888888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcC---CcHhHHHHHHHHHHhc
Q 048778 819 NLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTG---DELGKSIDLLNLIDQV 894 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~l~~~~~~ 894 (902)
+++.+. .| +...+..++.+|.+.|++++|++.++++++.... +...+..++..+... |++++|.+.+++..+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888764 34 4577777888888888888888888887766533 345666777777777 8888888888877766
Q ss_pred Cc
Q 048778 895 HY 896 (902)
Q Consensus 895 ~~ 896 (902)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=6.8e-09 Score=97.66 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG-LVS 700 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~ 700 (902)
..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 344555666777777777777665532 345666777777777777777777777766542 3333322221111 111
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.+ ...+|...++++++.+|.++..+..++..+...|++++|
T Consensus 87 ~~---------------------------------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 87 QA---------------------------------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp HH---------------------------------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hc---------------------------------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Confidence 11 223467777888877788888888888888888888888
Q ss_pred HHHHHHHHHcCCCchH-hH-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 781 DRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+..|+++++..+.+.. .. ..++.+|...|+.++|...+++.+.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888774433322 22 6777777777777777777776653
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=2.8e-09 Score=96.43 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++..+-..++++++.+|.+...+..++..+.+.|++++|+..|+++++ ..|+... ..++.+|...|++++|+..++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 444444566777777888999999999999999999999999999998 4566555 889999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 820 LILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 820 ~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
++++. .| ++..|..++.+|...|++++|+..|+++++....
T Consensus 95 ~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 95 VAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99985 56 4688999999999999999999999999887643
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=3.7e-08 Score=112.29 Aligned_cols=151 Identities=12% Similarity=0.048 Sum_probs=113.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccc
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
.|++++|+..+++..+.. +.+...+..+...+.+.|++++|.+.+++.++. .| +...+..+...+...|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g------- 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQ------- 71 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTT-------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-------
Confidence 478899999999988754 456888899999999999999999999999874 44 5678888888888888
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++++++.+|.+...+..++..|...|++++|++.++++.+
T Consensus 72 --------------------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 72 --------------------------------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988
Q ss_pred cCCCchHhH--HHHHHHHHcc---CChHHHHHHHHHHHHcC
Q 048778 790 SGVFPAKAI--TSIIGCYCKE---RKYDDCLEFMNLILESG 825 (902)
Q Consensus 790 ~~~~p~~~~--~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 825 (902)
. .|+... ..++.+|... |++++|.+.++++++.+
T Consensus 120 ~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 120 L--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred h--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4 454443 8888899999 99999999999998753
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=3.1e-08 Score=86.85 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=68.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHH
Q 048778 756 CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFES 832 (902)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 832 (902)
.+|.....+..++..|.+.|++++|++.|+++++ ..|+... ..++.+|...|++++|+..++++++. .| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHH
Confidence 4455566666777777777777777777777776 3344433 66677777777777777777777664 34 3466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
|..++.++...|++++|+..++++++..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 77777777777777777777777766543
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=2.9e-06 Score=93.54 Aligned_cols=375 Identities=7% Similarity=-0.056 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 048778 389 IIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQ-LDIALKIFN 467 (902)
Q Consensus 389 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~ 467 (902)
++.|..+|+.+... .|. |+.+.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666543 222 7777777777777763 3577777777766655553 344556666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 468 SMSIF-GL-VPDGFTFTSIIDGLC----KLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 468 ~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (902)
..... |. ..+...|...+..+. ..++.+.+..+|++.+......-...|...... .+......+.++..+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~- 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL- 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-
Confidence 65543 32 234556666555433 234566666677666653211111122211111 11111112222221111
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCC
Q 048778 542 NTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG-------NIALAMSMIEVMKLAGC 614 (902)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~ 614 (902)
+.+..|..+++.+...--..+...|...++--...+ ..+.+..+|++++.. +
T Consensus 151 --------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~ 209 (493)
T 2uy1_A 151 --------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-F 209 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-C
Confidence 123333333333332100012334444333221110 023455666666664 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------C
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC---------Q 685 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---------~ 685 (902)
+.+...|...+.-+...|+.++|..++++.... +.+...+.. |....+.++. ++.+.+.-. .
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 445566666666666677777777777777665 223222221 1111111111 222211100 0
Q ss_pred C---CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH
Q 048778 686 L---NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762 (902)
Q Consensus 686 ~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 762 (902)
+ ...+|...+ +...+.++.+.|..+|+++ ...+.+..
T Consensus 281 ~~~~~~~lw~~y~---------------------------------------~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 281 FSKELDLLRINHL---------------------------------------NYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp CHHHHHHHHHHHH---------------------------------------HHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred cccccHHHHHHHH---------------------------------------HHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 0 011222222 2223344888899999888 33233455
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAG-RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ 841 (902)
Q Consensus 763 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~ 841 (902)
.|...+..-...+ +.+.|..+|+.+++............++...+.|+.+.|..+++++. .....|...+..-.
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 5654444433344 58889999988887542211112456666777888888888888862 23456666666556
Q ss_pred hcCCHHHHHHHHHHHHh
Q 048778 842 SEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~ 858 (902)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67888888888888753
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=1.1e-07 Score=98.57 Aligned_cols=194 Identities=9% Similarity=0.037 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ-RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.|++++|.+++++..+.. +.. +.. .+++++|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567888999888876531 111 111 46677777766654 345667788888888
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 675 IVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 675 ~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
.+.++.+. +-.+ -..++..+...|...| ++++|...
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---------------------------------------~~~~A~~~ 98 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ---------------------------------------RMPEAVQY 98 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------------CGGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---------------------------------------CHHHHHHH
Confidence 77777642 1001 1235555555666666 77777777
Q ss_pred HHHHHhcC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HhH-HHHHHHHHccCChHHHH
Q 048778 750 RDRIESCG--GS----TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-------KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 750 ~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~-~~l~~~~~~~g~~~~A~ 815 (902)
|+++++.. .. ...++..++..|.. |++++|++.|+++++. .|. ... ..++.+|...|++++|+
T Consensus 99 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 99 IEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77766553 11 13567778888877 8888888888888752 221 112 67788888888888888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 816 EFMNLILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 816 ~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..++++++. +..+. ...+..++.++...|++++|+..+++++
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888752 11111 1355666677777788888888888876
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=4.5e-08 Score=85.79 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=89.1
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
+...+..+.+.|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|+..|+++++ +.|+... ..++.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence 334445555555999999999999999999999999999999999999999999999999 4566554 899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
.|++++|++.++++++. .|+ ...+..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV--DPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--CcCCHHHHHHHHHh
Confidence 99999999999999985 674 4555555443
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=6.6e-08 Score=87.35 Aligned_cols=85 Identities=9% Similarity=-0.038 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|.+.|+++++.+|.++..|..++.+|...|++++|+..|+++++ +.|+... ..++.+|...|++++|+..++
T Consensus 51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888877 4455444 777788888888888888888
Q ss_pred HHHHcCCCCCH
Q 048778 820 LILESGFVPSF 830 (902)
Q Consensus 820 ~~~~~~~~p~~ 830 (902)
++++. .|+.
T Consensus 129 ~al~l--~~~~ 137 (151)
T 3gyz_A 129 LVIQH--SNDE 137 (151)
T ss_dssp HHHHH--CCCH
T ss_pred HHHHh--CCCH
Confidence 88764 4554
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=6.7e-06 Score=90.64 Aligned_cols=392 Identities=13% Similarity=0.024 Sum_probs=197.7
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCC-HHHH
Q 048778 174 KLD-LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGND-LKEA 251 (902)
Q Consensus 174 ~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 251 (902)
+.| +++.|..+|+++...- |. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3667777777765431 21 7788888888887764 5677777777776666653 3556
Q ss_pred HHHHHHhhhcCCC-CCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 048778 252 FKVFDVMSKEASY-RPNSVTFTTLIHGLC----EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLF 326 (902)
Q Consensus 252 ~~~~~~m~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 326 (902)
..+|+.....-|. ..+...|...+..+. .+|+.+.+.++|++.... |.. .+..+-.. |
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~-------------Y 130 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKD-------------F 130 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHH-------------H
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHH-------------H
Confidence 6777776654342 235556666665433 235566777777777763 211 11111111 1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----hHHHHHHHHHH
Q 048778 327 DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQG--R-----IIAAFELLALM 399 (902)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m 399 (902)
..+... .+..+...++.-.. +.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 131 ~~fE~~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 131 ENFELE---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHH---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111111 01112222222211 233344444444332100012334444443321110 0 22344556665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048778 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479 (902)
Q Consensus 400 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (902)
.... +-+...|...+..+.+.|+.++|..++++.... |....... .|....+.++. ++.+.+
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~-------- 267 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR-------- 267 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH--------
Confidence 5432 234555555566666666666666666666655 22221111 11111111111 111111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
.+.. ...+.+ .. .. .......|...+....+.+..+.|..+|++. +.. ..+...|......-.
T Consensus 268 -------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 268 -------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp -------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred -------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 0000 000000 00 00 0012245666666666777888899999888 321 123334433222222
Q ss_pred h-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 560 K-ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 560 ~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
. .++.+.|..+|+...+.. +.+...+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 236889999999888743 2235556667777788899999999999873 25677888887777789999998
Q ss_pred HHHHHHHH
Q 048778 639 MLLFKMFD 646 (902)
Q Consensus 639 ~~~~~m~~ 646 (902)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888763
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=9.2e-08 Score=97.54 Aligned_cols=192 Identities=9% Similarity=-0.028 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchh
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDY 730 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (902)
+...+..+...+.+.|++++|+..++++++. .| +...|..+...+.+.|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~---------------------------- 52 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQ---------------------------- 52 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT----------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhc----------------------------
Confidence 4567778888899999999999999998874 44 6778888888888888
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc
Q 048778 731 ERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 731 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~ 808 (902)
++++|...++++++.+|.+..++..++.+|...|++++|+..|+++++ ..|+... ...++....
T Consensus 53 -----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~- 118 (281)
T 2c2l_A 53 -----------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR- 118 (281)
T ss_dssp -----------CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH-
T ss_pred -----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 4455422 222222221
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc-hhHHHHHHHHhcC-CcHhHHHH
Q 048778 809 RKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK-AAVLPYIEFLLTG-DELGKSID 886 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~ 886 (902)
..++..... ........+......+...+ .|++++|++.++++++.. |+. .....+...+.+. +.+++|.+
T Consensus 119 --~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 119 --IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp --HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 122222222 22333344555555554443 689999999999876654 332 2333333334444 77888999
Q ss_pred HHHHHHhc
Q 048778 887 LLNLIDQV 894 (902)
Q Consensus 887 ~l~~~~~~ 894 (902)
+|+++.+.
T Consensus 192 ~f~~a~~~ 199 (281)
T 2c2l_A 192 LFSQVDEK 199 (281)
T ss_dssp HHHHSSCT
T ss_pred HHHhhhcc
Confidence 99877654
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=3.6e-08 Score=89.36 Aligned_cols=111 Identities=9% Similarity=-0.037 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
...|+++++.+|.+...+..++..+...|++++|+..|++++.. .|+... ..++.+|...|++++|+..++++++.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35677888888889999999999999999999999999999984 465544 88999999999999999999999975
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 825 GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 825 ~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.| +...+..++.+|...|++++|+..++++++...
T Consensus 85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45 458888999999999999999999999877643
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=8.8e-07 Score=91.07 Aligned_cols=151 Identities=8% Similarity=-0.000 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-----H-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTD------FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-----I-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~-~~l~~~~~~~g 809 (902)
++++|.+.+++..+..+.++. .+..++..+...|++++|+..++++++.....+.. . ..++.+|...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 666666666666554432222 22235555555566666666666666532221111 2 55666666666
Q ss_pred ChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C-cchhHHHHHHHHhcC
Q 048778 810 KYDDCLEFMNLILE----S-GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI----E-EKAAVLPYIEFLLTG 878 (902)
Q Consensus 810 ~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~ 878 (902)
++++|..+++++++ . +..+. ..++..++.+|.+.|++++|+.+++++++.... + -...+..++..+.+.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 66666666666652 1 11111 135566666666666666666666665543211 1 133455566666666
Q ss_pred Cc-HhHHHHHHHHHH
Q 048778 879 DE-LGKSIDLLNLID 892 (902)
Q Consensus 879 g~-~~~a~~~l~~~~ 892 (902)
|+ +++|++.+++..
T Consensus 250 g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 250 EYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 63 466666665543
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=9.2e-08 Score=99.17 Aligned_cols=197 Identities=9% Similarity=-0.065 Sum_probs=145.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCcc
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS-TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVL 708 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 708 (902)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g------ 50 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAK------ 50 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTT------
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcC------
Confidence 3567888888888776531 111 122 47888888887765 23455666
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG--S----TTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
++++|.+.|.++++..+ . -..+|..++..|...|++++|+.
T Consensus 51 ---------------------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 51 ---------------------------------QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred ---------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999887752 1 24578999999999999999999
Q ss_pred HHHHHHHcCC---CchHh--H-HHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 783 IMKDIMKSGV---FPAKA--I-TSIIGCYCKERKYDDCLEFMNLILESGF---VP--SFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 783 ~~~~~~~~~~---~p~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|+++++... .+... . ..++.+|.. |++++|+..++++++... .+ ...++..++.+|...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876311 12222 2 788889988 999999999999985310 11 13678889999999999999999
Q ss_pred HHHHHHhCCCC----Cc-chhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 852 LVSDLFRYNGI----EE-KAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 852 ~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.++++++.... +. ...+..++..+...|++++|+..+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99998765221 11 2256666777888999999999999887
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.9e-07 Score=91.11 Aligned_cols=133 Identities=11% Similarity=-0.081 Sum_probs=105.1
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHHccCCh
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKY 811 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~ 811 (902)
..+...|++++|.+.|+.+...+|.+. ....++..+.+.|++++|+..|+...... .|. ... ..++.++...|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 344455599999999999998778777 88889999999999999999998765521 221 223 8889999999999
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHH
Q 048778 812 DDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPY 871 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 871 (902)
++|+..+++.......|. .+.....+.++.+.|+.++|...|+++....+. ...+..|
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 999999999986433264 467788899999999999999999999877654 4444443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=3.2e-06 Score=86.84 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=121.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANG-CQLNSN----VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 129 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------------------------- 129 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-------------------------------
Confidence 4667888999999999999988632 112211 2223444455555
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHhH--HH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GVFPAKAI--TS 800 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~--~~ 800 (902)
++++|...++++++.. .++ ..+++.++..|...|++++|+..|+++++. +..+.... ..
T Consensus 130 --------~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp --------CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 9999999999999864 223 337999999999999999999999999841 12233332 88
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSEGR-NKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~-~~~A~~~~~~~~~~ 859 (902)
++.+|.+.|++++|+.+++++++. +..+. ...|..++.++.+.|+ +++|++.+++++..
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999999988842 22222 4788999999999995 79999999998644
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=7.9e-07 Score=86.41 Aligned_cols=126 Identities=11% Similarity=-0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
+..+...+...|++++|+..+++. +.|+...+..+...+...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g--------------------------------- 51 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILK--------------------------------- 51 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcC---------------------------------
Confidence 445666677778888888777766 3556777777777777777
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------chHhH--H
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF--------------PAKAI--T 799 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------p~~~~--~ 799 (902)
++++|.+.++++++.+|.+..+|..++..|...|++++|++.|+++.+.... |.... .
T Consensus 52 ------~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 52 ------NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHH
Confidence 8888888888888887888888888888888888888888888888773321 11112 7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
.++.+|...|++++|...++++.+.
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777788888888888888887764
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=6e-06 Score=84.60 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=139.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR-G-RFK 635 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~ 635 (902)
.+.+..++|+++++.++..+. -+..+|+.--..+...| .++++++.++.++... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678888888887542 25666777777777788 5999999999999875 66778888877777776 6 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCc
Q 048778 636 EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD--------HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 707 (902)
+++.+++++++.. +-|...|+.-.-++.+.|.++ +++++++++++. -.-|...|+.....+.+.+....
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N~SAW~~R~~lL~~l~~~~~- 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRNNSAWGWRWYLRVSRPGAET- 219 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHTTSTTCCC-
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcccccc-
Confidence 9999999998765 567788877776666666666 999999999985 24477888887777766651100
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRI 777 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 777 (902)
....++++++.+++++..+|.|..+|+.+...+.+.|+.
T Consensus 220 -------------------------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 -------------------------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred -------------------------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 001478999999999999999999999999888887764
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=3.3e-06 Score=86.54 Aligned_cols=227 Identities=7% Similarity=0.001 Sum_probs=166.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG-RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-G-RLDH 671 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g-~~~~ 671 (902)
+.+..++|+++++.++..+ +-+...|+.--..+...| .+++++.+++.++... +-+..+|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999999874 556778888888888888 5999999999999875 56788888888877776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 672 AFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 672 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
++++++++++. -+-|...|+.-...+.+.+..+.. ....++++++.++
T Consensus 144 EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~-------------------------------~~~~~~eELe~~~ 191 (349)
T 3q7a_A 144 EIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRI-------------------------------SEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCC-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccccc-------------------------------chhhHHHHHHHHH
Confidence 99999999864 233677777666555555511100 0014569999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh-----------
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGR-------IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY----------- 811 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~----------- 811 (902)
++++.+|.|..+|+.....+.+.++ ++++++.+++++. ..|++.. ..+...+.+.|+.
T Consensus 192 k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999998886 7899999999998 4566655 5556666665553
Q ss_pred ---------HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 812 ---------DDCLEFMNLILESG-----FVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 812 ---------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
.+.......+...+ -.+++..+..++++|...|+.++|.++++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 23333333333211 12456788889999999999999999999975
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=2e-07 Score=89.81 Aligned_cols=156 Identities=12% Similarity=-0.031 Sum_probs=117.7
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHccCChH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..|++++|.+.++.+....+....++..++..+...|++++|+..++++++. +..+.... ..++..|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3569999999666665433467889999999999999999999999998762 12233333 88899999999999
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCc--chhHHHHHHHHhcCCcH
Q 048778 813 DCLEFMNLILES----GFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG---IEE--KAAVLPYIEFLLTGDEL 881 (902)
Q Consensus 813 ~A~~~~~~~~~~----~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~ 881 (902)
+|...+++..+. +-.| ....+..++.++...|++++|...++++++... .+. ...+..++..+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999998742 2122 135678889999999999999999999875421 111 22356778889999999
Q ss_pred hHHHHHHHHHHhc
Q 048778 882 GKSIDLLNLIDQV 894 (902)
Q Consensus 882 ~~a~~~l~~~~~~ 894 (902)
++|.+.+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=6.9e-08 Score=95.50 Aligned_cols=132 Identities=8% Similarity=-0.054 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS--FESHCTVIQG 839 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 839 (902)
.+..++..+...|++++|.++|+.+... .|+... ..++..+.+.|++++|+..++...+.. .|. ...+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455788899999999999999999874 466656 888889999999999999998665531 222 3478889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 840 LQSEGRNKQAKNLVSDLFRYNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
+...|++++|+..|+++...+..|. ...+..++.++.+.|+.++|...|+++......
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999876554243 345677888999999999999999999887543
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=1.6e-08 Score=106.11 Aligned_cols=146 Identities=12% Similarity=-0.048 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----------------hH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----------------AI-TSIIGC 804 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------------~~-~~l~~~ 804 (902)
++++|.+.++...+..|.+...|..++..|.+.|++++|+..|+++++.. |+. .. ..++.+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556677788888888888888888888888888743 443 23 778888
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++..+. +...+..+...+.+.|++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888875 34 4577788888888888888888888888776543 34566677777788888887
Q ss_pred H-HHHHHHHH
Q 048778 884 S-IDLLNLID 892 (902)
Q Consensus 884 a-~~~l~~~~ 892 (902)
| .+.++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44555554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=1.4e-06 Score=89.62 Aligned_cols=165 Identities=8% Similarity=-0.016 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS------NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
.+...+..+...|++++|.+.+++.++.... .. ..+..+...+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------- 129 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKV-------------------------- 129 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSS--------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 3444566677778888888887777664211 11 11222333444445
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC-chH--
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKDIM---KSGVF-PAK-- 796 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-p~~-- 796 (902)
++++|...++++++..+.. ..+++.++..|...|++++|+..|++++ +.... +..
T Consensus 130 -------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 130 -------------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp -------------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 8999999999988654221 4588999999999999999999999987 32211 111
Q ss_pred hH-HHHHHHHHccCChHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhC
Q 048778 797 AI-TSIIGCYCKERKYDDCLEFMNLILESG----FVPS-FESHCTVIQGLQSEGRNKQA-KNLVSDLFRY 859 (902)
Q Consensus 797 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~~ 859 (902)
.. ..++.+|...|++++|+.+++++++.. .... ..+|..++.+|.+.|++++| ...+++++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 23 889999999999999999999987531 1111 47788899999999999999 7878887543
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=2.7e-07 Score=85.49 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=78.8
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|...|+++++..|.+..++..++..+...|++++|+..++++++.. |+... ..++.+|...|+++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHH
Confidence 333444477777777777777777777777777777777777777777777777743 43333 67777777777777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 048778 813 DCLEFMNLILESGFVP-SFESHCT--VIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~--l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+|...++++.+. .| +...+.. .+..+...|++++|+..+++.
T Consensus 99 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 99 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777764 23 3334433 333366667777777777664
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.1e-07 Score=89.29 Aligned_cols=123 Identities=8% Similarity=0.053 Sum_probs=103.9
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH-HHccCCh--
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC-YCKERKY-- 811 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~-~~~~g~~-- 811 (902)
+...|++++|...++++++.+|.+...|..++..|...|++++|+..|+++++.. |+... ..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 4566799999999999999999999999999999999999999999999999844 54443 788888 7899998
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 812 DDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++|...++++++. .| +...+..++.++...|++++|+..++++++..+..
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999975 45 46888899999999999999999999998876543
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=1.7e-06 Score=83.95 Aligned_cols=130 Identities=6% Similarity=-0.121 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
+..+...+...|++++|+..+++. +.|+...+..+..+|...|++++|+..+++.++.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 334455556666666666666554 24456666666666666666666666666666531 2344556666666666
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH----------------HHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT----------------DFY 764 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~ 764 (902)
.| ++++|.+.|+++++..|.+. .++
T Consensus 84 ~~---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 84 TE---------------------------------------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH
T ss_pred cc---------------------------------------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH
Confidence 66 66777777777666555444 889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..++.+|...|++++|.+.|+++++. .|+.
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 99999999999999999999999984 4543
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1e-06 Score=81.48 Aligned_cols=129 Identities=11% Similarity=-0.022 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+..+...+...|++++|...+++.++. .+.+..++..+...+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~------------------------------- 61 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTE------------------------------- 61 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTT-------------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcC-------------------------------
Confidence 34555666667777777777777777653 1234566666666666666
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
++++|.+.++++++.+|.+..+|..++..+...|++++|+..++++++..+...... ..++..+...|++
T Consensus 62 --------~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 62 --------CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776433222222 3333346667777
Q ss_pred HHHHHHHHHHH
Q 048778 812 DDCLEFMNLIL 822 (902)
Q Consensus 812 ~~A~~~~~~~~ 822 (902)
++|+..+++..
T Consensus 134 ~~A~~~~~~~~ 144 (166)
T 1a17_A 134 ERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHcccchH
Confidence 77777776654
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=5.7e-07 Score=78.80 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--------H-HHHHHHHHc
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--------I-TSIIGCYCK 807 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~-~~l~~~~~~ 807 (902)
+.+.|++++|++.|+++++.+|.++.+|..++.+|...|++++|++.++++++ +.|+.. . ..++.+|..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHHHHHHHH
Confidence 33333777777777777777777777777777777777777777777777665 223221 1 344445555
Q ss_pred cCChHHHHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILE 823 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~ 823 (902)
.|++++|++.+++.++
T Consensus 96 ~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555544
No 138
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=2.6e-05 Score=79.64 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=149.5
Q ss_pred cCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 561 ENKLK-EEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN----------IALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629 (902)
Q Consensus 561 ~g~~~-~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 629 (902)
.|.++ +|+.+++.++..+. -+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34433 56666666665321 133445443333333222 678888888888764 668888888877777
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 630 QRG--RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR-LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 630 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
..+ .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.++++++. -+-|...|+.....+.+......
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhhhccc
Confidence 777 4899999999999875 6678888888888888888 58999999999985 24477788777666655531100
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----------C
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA-----------G 775 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g 775 (902)
.- ...-...+.++++++.+.+++..+|.|..+|+.+...+.+. +
T Consensus 198 ~~-------------------------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 198 SG-------------------------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred cc-------------------------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 00 00000113789999999999999999999999888777666 3
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH--HHHHH---HHHccCChHHHHHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI--TSIIG---CYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~--~~l~~---~~~~~g~~~~A~~~~~~~~~ 823 (902)
.++++++.++++++ ..|+... ..++. .....|..+++...+.++.+
T Consensus 253 ~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45666666666666 3455433 11111 11123445555555555554
No 139
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=2.4e-07 Score=83.32 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
..|+++++.+|.+...+..++..+...|++++|+..|++++.. .|+... ..++.+|...|++++|+..++++++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM- 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3556666667778888888888999999999999999998884 454444 78888889999999999999998875
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.| ++..+..++.+|...|++++|+..++++++..
T Consensus 82 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 -DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34 45778888889999999999999999887664
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=5.1e-06 Score=85.29 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH------ITYSILVRAHASTGRLDHAFKIVSFMVANGC---QLN--S 688 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~ 688 (902)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445566677777777777777776542 1121 2234456667778888999888888875311 111 3
Q ss_pred HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc---CCCC----H
Q 048778 689 NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC---GGST----T 761 (902)
Q Consensus 689 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~ 761 (902)
.+++.+...|...| ++++|...|+++++. .+.+ .
T Consensus 156 ~~~~~lg~~y~~~~---------------------------------------~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 156 YIENAIANIYAENG---------------------------------------YLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHHHHHHHHhcCccccchH
Confidence 46777777777777 999999999988843 3432 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HhH-HHHHHHHHccCChHHH-HHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-------KAI-TSIIGCYCKERKYDDC-LEFMNLILE 823 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~-~~l~~~~~~~g~~~~A-~~~~~~~~~ 823 (902)
.++..++..|...|++++|+..++++++.. ++ ... ..++.+|...|++++| ..+++++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 688999999999999999999999997632 22 233 8899999999999999 787888764
No 141
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=2.2e-05 Score=80.06 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR-IVEADRIMKDIMK 789 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 789 (902)
++++..+++++++.+|.|..+|+.-...+...|. ++++++.++++++
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4444445555555445555555544444444444 3444444444444
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=8.2e-07 Score=90.42 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777788888888877777653 4466777777777788888888888887777653 445677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+|...|++++|...+++..+. .|+. ..+...+....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~----------------------------------------- 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL----------------------------------------- 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH-----------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH-----------------------------------------
Confidence 888888888888888777652 2211 00000110000
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc-CChHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE-RKYDDCLEF 817 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~-g~~~~A~~~ 817 (902)
...++...........+.+......+...+ .|++++|++.++++++ ..|+... ..+...+... +.+++|.++
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 192 (281)
T 2c2l_A 118 -RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDEL 192 (281)
T ss_dssp -HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111111122222355555555554433 5677777777777766 4455444 4554444444 566777777
Q ss_pred HHHHHH
Q 048778 818 MNLILE 823 (902)
Q Consensus 818 ~~~~~~ 823 (902)
|.++.+
T Consensus 193 f~~a~~ 198 (281)
T 2c2l_A 193 FSQVDE 198 (281)
T ss_dssp HHHSSC
T ss_pred HHhhhc
Confidence 776653
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=1.3e-06 Score=84.02 Aligned_cols=118 Identities=9% Similarity=-0.146 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC-Cc-hHhH--HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESC------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---GV-FP-AKAI--TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~p-~~~~--~~l~~~~~~~ 808 (902)
++++|...++++++. .+....++..++..|...|++++|++.++++++. .. .+ .... ..++.++...
T Consensus 41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 120 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 556666555555552 1334556777777888888888888887777653 11 22 1122 6777778888
Q ss_pred CChHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 809 RKYDDCLEFMNLILES---GFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~---~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
|++++|...+++..+. .-.+. ..++..++.++...|++++|...++++++.
T Consensus 121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888888888877631 00111 244567788888888888888888887544
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=6.2e-07 Score=93.98 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGST---------------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..+..+.+.|++++|...|+++++..|.+ ..+|..++.+|.+.|++++|+..++++++. .|+.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 229 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNN 229 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 34444555559999999999999999887 689999999999999999999999999994 5655
Q ss_pred hH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048778 797 AI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQA-KNLVSDLF 857 (902)
Q Consensus 797 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~ 857 (902)
.. ..++.+|...|++++|+..++++++. .| +...+..++.++.+.|+.++| ..++++|+
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 89999999999999999999999985 56 458888999999999999999 55777765
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1.6e-06 Score=76.51 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++++++..|.+...+..++..+...|++++|+..++++.+
T Consensus 65 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555455555555555555555555555555555544
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=2.6e-07 Score=83.56 Aligned_cols=80 Identities=11% Similarity=-0.059 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.++..|..++.+|...|++++|+..|++++. +.|+... ..++.+|...|++++|...++
T Consensus 36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655 2343333 555666666666666666666
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++++
T Consensus 114 ~al~ 117 (148)
T 2vgx_A 114 LAQE 117 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=5.7e-07 Score=84.42 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=77.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCcCCcc
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG-LVSSNKASGVL 708 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~ 708 (902)
..|++++|+..+++..+.. +.+...|..+..+|...|++++|...++++.+.. +.+...+..+... +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~------ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS------ 93 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT------
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC------
Confidence 4566677777777666543 4456667777777777777777777777776531 2245555556555 55555
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV--EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++ ++|...++++++.+|.+..++..++..|...|++++|+..|++
T Consensus 94 ---------------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 94 ---------------------------------QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp ---------------------------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 65 7777777777777777777777777777777777777777777
Q ss_pred HHH
Q 048778 787 IMK 789 (902)
Q Consensus 787 ~~~ 789 (902)
+++
T Consensus 141 al~ 143 (177)
T 2e2e_A 141 VMD 143 (177)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=1.1e-07 Score=91.36 Aligned_cols=149 Identities=12% Similarity=-0.037 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----------------hH-HHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-----------------AI-TSIIG 803 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----------------~~-~~l~~ 803 (902)
++++|.+.++...+..+.....+..++..+...|++++|+..|+++++.. |+. .. ..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44444444433222223345567778888888899999999998888733 322 23 77888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHh
Q 048778 804 CYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELG 882 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (902)
+|...|++++|+..++++++. .| +...+..++.+|...|++++|+..++++++..+. +...+..+...+...|+.+
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988875 34 4678888888898999999999999998777543 3455666777777777777
Q ss_pred HHH-HHHHHHHhcC
Q 048778 883 KSI-DLLNLIDQVH 895 (902)
Q Consensus 883 ~a~-~~l~~~~~~~ 895 (902)
++. ..++.|..+|
T Consensus 174 ~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 174 KKDKLTFGGMFDKG 187 (198)
T ss_dssp C-------------
T ss_pred HHHHHHHHHHhccc
Confidence 766 5555555443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=3.8e-07 Score=79.97 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC--CCCC----HH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG--FVPS----FE 831 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~ 831 (902)
...++..|+..+.+.|++++|++.|+++++ +.|+... ..++.+|...|++++|+..++++++.. ..++ ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355788899999999999999999999999 5576665 889999999999999999999998631 1111 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
+|..++.++...|++++|++.++++++....|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 67788899999999999999999998765443
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.1e-06 Score=76.93 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=57.7
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.|++++|...|+++++.+|.+...|..++.+|...|++++|+..++++++. .|+... ..++.+|...|++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCH
Confidence 334444447777777777777777777777777777777777777777777777663 344333 6666666677777
Q ss_pred HHHHHHHHHHHH
Q 048778 812 DDCLEFMNLILE 823 (902)
Q Consensus 812 ~~A~~~~~~~~~ 823 (902)
++|...++++++
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766665
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.50 E-value=4.2e-06 Score=72.65 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333344444444444444444443321 2233334444444444444444444444443
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=2.7e-06 Score=75.00 Aligned_cols=119 Identities=12% Similarity=-0.029 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 44566777777777777777777777777653 345677777777777778888888888777764 2335566777777
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+...| ++++|.+.++++++.+|.+...+..++..+...|+
T Consensus 93 ~~~~~~---------------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMK---------------------------------------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTT---------------------------------------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHh---------------------------------------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777777 88888888888887777777777777777766653
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=4.6e-06 Score=72.42 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++.+..|.+..++..++..+...|++++|...++++.+
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555455555555555555555555555555555544
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=3.2e-06 Score=74.15 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+.. |+... ..++.+|...|++++|...++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444421 22111 444444444444444444444
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++.+
T Consensus 105 ~~~~ 108 (131)
T 2vyi_A 105 KALE 108 (131)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=3.4e-06 Score=74.00 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|.+.+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3334444444444444444444444321 22333444444444444444444444444443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=9e-07 Score=79.46 Aligned_cols=89 Identities=8% Similarity=-0.143 Sum_probs=78.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.|++++|...|+++++.+|.+...|..++.+|...|++++|+..|+++++. .|+... ..++.+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCH
Confidence 334444449999999999999999999999999999999999999999999999994 465544 8899999999999
Q ss_pred HHHHHHHHHHHHc
Q 048778 812 DDCLEFMNLILES 824 (902)
Q Consensus 812 ~~A~~~~~~~~~~ 824 (902)
++|...++++++.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=3.1e-06 Score=73.96 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..+...+.+.|++++|+..+++.++. .+.+...|..+..++.+.|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~------------------------------ 52 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLM------------------------------ 52 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhc------------------------------
Confidence 345677778888888999999888888874 2336677888888888888
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|...++++++.+|.+..+|..++.++...|++++|+..|+++++.
T Consensus 53 ---------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 53 ---------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998999999999999999999999999999998873
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=7.4e-07 Score=98.18 Aligned_cols=121 Identities=9% Similarity=0.035 Sum_probs=100.8
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
+...+..+.+.|++++|.+.|+++++.+|.+..+|..++.+|.+.|++++|++.++++++ ..|+... ..++.+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 444556677788999999999999999999999999999999999999999999999999 4566554 899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPS-FESHCTVIQG--LQSEGRNKQAKNLVS 854 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--l~~~g~~~~A~~~~~ 854 (902)
.|++++|.+.++++++. .|+ ...+..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999975 453 4566667666 888999999999999
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=7.8e-07 Score=77.12 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=72.5
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
.+...+..+.+.|++++|...|+++++.+|.+..+|..++.++...|++++|+..|+++++ +.|+... ..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3455566677777888888888888888888888888888888888888888888888887 4454443 77777888
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|+..++++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877753
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=2.9e-06 Score=72.05 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=23.8
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..+..+...|++++|...++++++..|.+...|..++..+...|++++|+..++++++
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333334444444444444444444333444444444444444444444444444433
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3.9e-06 Score=74.57 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.+..+|..++.++...|++++|+..++++++. .|+... ..++.+|...|++++|...++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555542 232222 444555555555555555555
Q ss_pred HHH
Q 048778 820 LIL 822 (902)
Q Consensus 820 ~~~ 822 (902)
+++
T Consensus 102 ~a~ 104 (137)
T 3q49_B 102 RAY 104 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=3.5e-06 Score=71.56 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 048778 757 GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESH 833 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 833 (902)
+|.+...+..++..+...|++++|+..++++++...........++.+|...|++++|...++++.+. .| +...+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHH
Confidence 36778889999999999999999999999999854332222288999999999999999999999985 34 46888
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 048778 834 CTVIQGLQSE-GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 834 ~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~ 862 (902)
..++.++... |++++|++.++++++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999999 9999999999999877644
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=3.3e-06 Score=77.99 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=76.8
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
.+...+..+.+.|++++|++.|+++++.+|.+...|..++.+|...|++++|+..|+++++. .|+... ..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444455555559999999999999998989999999999999999999999999999884 455444 88888999
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|...++++++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=4.1e-06 Score=77.30 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHC 834 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 834 (902)
+.+...|..++..+...|++++|+..|+++++. .|+... ..++.+|...|++++|+..++++++. .| +...|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 456778999999999999999999999999994 465444 89999999999999999999999985 45 468899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 835 TVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.++.+|...|++++|+..++++++....
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999877544
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=9.1e-06 Score=69.64 Aligned_cols=80 Identities=8% Similarity=0.024 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+.. |+... ..++.+|...|++++|...++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555422 22221 444445555555555555555
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++.+
T Consensus 97 ~~~~ 100 (118)
T 1elw_A 97 EGLK 100 (118)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.33 E-value=5.1e-06 Score=79.53 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------HHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-N----------------SNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
..+..+...+...|++++|+..+++.++. .| + ...+..+..++...|
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------------- 102 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-------------- 102 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 34555666666667777777777766652 11 1 145555666666666
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
++++|...++++++.+|.+..++..++.+|...|++++|+..|+++++. .|+.
T Consensus 103 -------------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 155 (198)
T 2fbn_A 103 -------------------------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 155 (198)
T ss_dssp -------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred -------------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCc
Confidence 8888888888888888888888888888888888888888888888774 3444
Q ss_pred hH--HHHHHHHHccCChHHHH-HHHHHHH
Q 048778 797 AI--TSIIGCYCKERKYDDCL-EFMNLIL 822 (902)
Q Consensus 797 ~~--~~l~~~~~~~g~~~~A~-~~~~~~~ 822 (902)
.. ..+..++...++.+++. ..+..+.
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 66666666666666655 4444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=1.4e-05 Score=68.37 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..++..+...|++++|...+++..+. .+.+...+..+...+...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~------------------------------ 52 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKG------------------------------ 52 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhc------------------------------
Confidence 344555666666667777777777666653 1224555566666666666
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++.+|.+...+..++..+...|++++|.+.++++.+
T Consensus 53 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 53 ---------DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---------cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777676777777777777777777777777777766
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=3.3e-07 Score=100.62 Aligned_cols=139 Identities=15% Similarity=0.047 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----------------hH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----------------AI-TSIIGC 804 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------------~~-~~l~~~ 804 (902)
++++|...++...+..|.....|..++..|.+.|++++|+..|+++++. .|+. .. ..++.+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333455556666677777777777777777776653 2332 22 566666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..|+++++..+. +...+..+...+.+.|++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654 33 3466666667777777777777777776655432 23445556666666666665
Q ss_pred HH
Q 048778 884 SI 885 (902)
Q Consensus 884 a~ 885 (902)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=8.3e-06 Score=72.41 Aligned_cols=101 Identities=13% Similarity=-0.018 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+...+...|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~--------------------------- 57 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQ--------------------------- 57 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---------------------------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhc---------------------------
Confidence 3467788888888889999999999998888742 335677888888888888
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|...++++++.+|.+..+|..++.+|...|++++|+..|+++++.
T Consensus 58 ------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 58 ------------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999873
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=4.5e-06 Score=73.22 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------HhH-HHHHHHHHccCChH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--------KAI-TSIIGCYCKERKYD 812 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~-~~l~~~~~~~g~~~ 812 (902)
++++|...++++++..|.+...+..++..|...|++++|+..++++.+.. |+ ... ..++.+|...|+++
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 66666666666666666666666666666666666666666666665522 22 111 44555555555555
Q ss_pred HHHHHHHHHHH
Q 048778 813 DCLEFMNLILE 823 (902)
Q Consensus 813 ~A~~~~~~~~~ 823 (902)
+|...++++.+
T Consensus 97 ~A~~~~~~~~~ 107 (131)
T 1elr_A 97 DAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=5.2e-06 Score=71.81 Aligned_cols=98 Identities=8% Similarity=-0.069 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.+..+...+.+.|++++|+..+++.++. .| +...|..+...+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g------------------------------- 65 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENE------------------------------- 65 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTT-------------------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcC-------------------------------
Confidence 3456677888999999999999999874 44 6778888888888888
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA 795 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (902)
++++|+..|+++++.+|.+..++..++..|...|++++|+..++++++ ..|+
T Consensus 66 --------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 66 --------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred --------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 999999999999999999999999999999999999999999999987 4454
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.7e-05 Score=71.41 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
...+..+...+...|++++|.+.+++.++ ..|+ ...+..+...+...+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~-------------------------- 79 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLE-------------------------- 79 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTT--------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHc--------------------------
Confidence 44455555555555555555555555554 2333 344444555555555
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++..|.+...+..++.+|...|++++|...|+++++
T Consensus 80 -------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 80 -------------DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -------------CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666655555566666666666666666666666666655
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.7e-05 Score=69.51 Aligned_cols=92 Identities=9% Similarity=-0.035 Sum_probs=54.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYC 806 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~ 806 (902)
.+..+...|++++|.+.|+++++..|.+. .++..++.++...|++++|+..|+++++..+... ... ..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444555566666666666666665555 5666666666666666666666666666332211 111 55566666
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666653
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=5.7e-06 Score=73.60 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-------------SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg------------------- 71 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------- 71 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------------
Confidence 3445566667777777777777777762 333 226666777777777
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC-------GGSTTDFY----NFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|+..++++++. +|.+..+| +..+.++...|++++|+..|+++++
T Consensus 72 --------------------r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle- 130 (159)
T 2hr2_A 72 --------------------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE- 130 (159)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred --------------------CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 999999999999999 99999999 9999999999999999999999998
Q ss_pred CCCchHh
Q 048778 791 GVFPAKA 797 (902)
Q Consensus 791 ~~~p~~~ 797 (902)
+.|++.
T Consensus 131 -l~p~d~ 136 (159)
T 2hr2_A 131 -MIEERK 136 (159)
T ss_dssp -HHHHCC
T ss_pred -cCCCcH
Confidence 556543
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=3.1e-05 Score=86.73 Aligned_cols=183 Identities=8% Similarity=-0.031 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
...++|++.++++++ +.| +..+|+.-...+...++..+ .+ .....+++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~--------------------~~---------~~~~~~~~ 91 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKS--------------------PE---------ESAALVKA 91 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSC--------------------HH---------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccc--------------------hh---------hhhhhHHH
Confidence 344678999999987 455 45666665555555541000 00 00003899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC-ChHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAG--RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER-KYDDCLEFMNLIL 822 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 822 (902)
+.+.++++++.+|.+..+|..-++.+.+.| +++++++.++++++..++-..+.+...+++.+.| .++++++++++++
T Consensus 92 eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999 7799999999999955333333377788888889 8999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 823 ESGFVP-SFESHCTVIQGLQSE--------------GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 823 ~~~~~p-~~~~~~~l~~~l~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
+. .| +..+|...+.++.+. +.+++|++++++++...+. +...|..+...+.+.|++++
T Consensus 172 ~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 172 TR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 75 45 457888877777663 6689999999999887754 56788777777777776544
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.1e-05 Score=70.75 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFE 831 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 831 (902)
+.+...+..++..+...|++++|+..|+++++. .|+. .. ..++.+|...|++++|+..++++.+. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 556666677777777777777777777777663 3432 22 66666777777777777777777654 33 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+..++.++...|++++|+..++++++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66677777777777777777777776654
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=9.8e-06 Score=74.20 Aligned_cols=134 Identities=8% Similarity=-0.057 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---chH--hH-HHHHHHHHccCChHHHHHHHHHHHHc----CCCC-C
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---PAK--AI-TSIIGCYCKERKYDDCLEFMNLILES----GFVP-S 829 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 829 (902)
..++..++..+...|++++|+..++++++.... +.. .. ..++..|...|++++|..+++++.+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345667777777777777777777777653111 111 12 66777777788888888877776632 1011 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 830 FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 830 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
...+..++.++...|++++|...++++++... .+ ....+..++..+...|++++|++.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35566777777788888888888877764421 11 1234556667777788888888887776543
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.5e-05 Score=72.96 Aligned_cols=126 Identities=12% Similarity=0.024 Sum_probs=96.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cch-Hh-H-HHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGG--ST----TDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPA-KA-I-TSI 801 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~-~-~~l 801 (902)
+..++..|++++|.+.++++++..+ ++ ..++..++..+...|++++|+..++++.+... .+. .. . ..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3334444499999999999987752 22 24788999999999999999999999875321 111 12 2 788
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERKYDDCLEFMNLILES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+.++...|++++|..++++..+. +..+ ....+..++.++...|++++|...++++++.
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999998742 2111 1367788999999999999999999998654
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.2e-05 Score=70.50 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+..++..+...|++++|...+++..+. .+.+...+..+...+...|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~------------------------------- 52 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKG------------------------------- 52 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhc-------------------------------
Confidence 45666777777788888888888877764 2335666667777777777
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGST-------TDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...++++++..|.+ ..++..++..|...|++++|.+.|+++.+..
T Consensus 53 --------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 53 --------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888776554 7788999999999999999999999998854
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=1.2e-05 Score=71.51 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=34.5
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGS-------TTD-----FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..+.+.|++++|...|+++++.+|. +.. +|..++.++.+.|++++|+..++++++
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455777777777777777665 222 566666666666666666666666555
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.17 E-value=1.1e-05 Score=74.24 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC--------CchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKS--------GV--------FPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
...+...+..+.+.|++++|+..|+++++. .+ .|.... ..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566677777777777777777777663 00 232223 677777888888888888888887
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 823 ESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 823 ~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+. .| +...|..++.+|...|++++|+..++++++..+
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 64 44 357777788888888888888888888776653
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=2e-06 Score=74.13 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 741 MDVEHAFRLRDRIESC---GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
|++++|+..|+++++. +|.+..++..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4777888888888877 36667778888888888888888888888887743 44333 77777778888888888
Q ss_pred HHHHHHHHc
Q 048778 816 EFMNLILES 824 (902)
Q Consensus 816 ~~~~~~~~~ 824 (902)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777754
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=1.8e-05 Score=72.67 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...++++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 888999999998888888888888899999999999999999988888 456654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1e-05 Score=85.58 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKS--------------GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFV 827 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (902)
|..++..+.+.|++++|++.|+++++. ...|.... ..++.+|.+.|++++|+..++++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 455677788888888888888887751 02344333 77888888888888888888888874 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHH
Q 048778 828 P-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 828 p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
| +...|..++.+|...|++++|+..++++++..+. +...+..+...+.+.++++++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4577888888888888888888888888777543 44556666777777777777654
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00013 Score=79.69 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHhH--HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV----FPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~--~~l~~~~~~~g 809 (902)
+.++|..++++.+... +.-..++..|+..|...|++++|..+++++...-. .+.... ..++..|...|
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 6777777777665432 22345677788888888888888888887754311 222222 67777888888
Q ss_pred ChHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 810 KYDDCLEFMNLILES--GF-VP-S--FESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++++|..+++++... .+ .| . ...+..++..+...|++++|...+.++.+
T Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888877631 11 12 1 24556666677778888888888777654
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=2.1e-05 Score=86.25 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN----------------SNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
..|..+...+.+.|++++|+..|+++++. .|+ ...|..+..+|.+.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------------- 331 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--------------- 331 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 34555666666666666666666666652 221 345566666666666
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|+..++++++.+|.+..+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 332 ------------------------~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~ 385 (457)
T 1kt0_A 332 ------------------------EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 385 (457)
T ss_dssp ------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----
T ss_pred ------------------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH
Confidence 888888888888888888888888888888888888888888888877 445544
Q ss_pred H--HHHHHHHHccCChHHHHH-HHHHHH
Q 048778 798 I--TSIIGCYCKERKYDDCLE-FMNLIL 822 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~-~~~~~~ 822 (902)
. ..+..++...|++++|.+ .+++|.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 667777777777776653 344443
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00012 Score=79.83 Aligned_cols=154 Identities=7% Similarity=-0.056 Sum_probs=111.4
Q ss_pred hccHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHc
Q 048778 740 EMDVEHAFRLRDRIESCGGS--T----TDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~ 807 (902)
.|++++|.+.+..+.+..+. + ..+.+.++..+...|++++|+.++++.... +..+.... ..++..|..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 33999999999988775411 1 234555666777789999999999888642 22233222 789999999
Q ss_pred cCChHHHHHHHHHHHH--cCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC-c--chhHHHHHHHHh
Q 048778 808 ERKYDDCLEFMNLILE--SGFV--PS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN---GIE-E--KAAVLPYIEFLL 876 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~--~~~~--p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~ 876 (902)
.|++++|..+++++.. .+.. +. ...+...+.+|...|++++|..++++++... ..| . ...+..++..+.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999873 2222 21 3788899999999999999999999986442 122 1 234455556677
Q ss_pred cCCcHhHHHHHHHHHHh
Q 048778 877 TGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~ 893 (902)
..|++++|...+.+...
T Consensus 228 ~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSSCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 88999999888776654
No 188
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=6.4e-06 Score=73.05 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=73.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRI----------VEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
+.+.+++|.+.+++.++.+|.+...|..++.++...+++ ++|+..|+++++ +.|+... ..++.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 445999999999999999999999999999999998875 589999999988 5565554 88888888
Q ss_pred ccC-----------ChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 807 KER-----------KYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 807 ~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
..| ++++|++.|+++++. .|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 764 788888888888774 5665443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=8.6e-06 Score=70.01 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 665 STGRLDHAFKIVSFMVANGC-QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
..|++++|+..+++.++.+. .| +...+..+...+...| +
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---------------------------------------~ 42 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---------------------------------------E 42 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---------------------------------------C
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---------------------------------------C
Confidence 35788888999988886421 23 4567777777888888 9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+++|.+.|+++++.+|.++.++..++.++...|++++|+..++++++..
T Consensus 43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998754
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=7.8e-05 Score=65.09 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNS---NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+...+...|++++|...++++++.. +.+. ..+..+...+...|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~------------------------------- 53 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATR------------------------------- 53 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTT-------------------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhc-------------------------------
Confidence 445667788899999999998888742 1222 46666777777777
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...|+++++..|.+ +.++..++.+|...|++++|+..|+++++..
T Consensus 54 --------~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 54 --------NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp --------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --------cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999988888 7889999999999999999999999998854
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=2.8e-05 Score=82.23 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+..+...+.+.|++++|++.|++.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45566666677777777777766654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=6e-06 Score=86.45 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh------------------H-HHHHHHHHccCChHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA------------------I-TSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------------~-~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
...+..++..+.+.|++++|+..|+++++ ..|+.. . ..++.+|.+.|++++|+..++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566677777777777777777777776 335443 4 77888889999999999999988
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH-HhcCCcHhHHHHHHHHHHhcCcc
Q 048778 822 LESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEF-LLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 822 ~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
++. .| +...|..++.+|...|++++|+..++++++..+. +...+..+... ....++.+++.+.++.|......
T Consensus 257 l~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 257 LTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 875 45 4578888888999999999999999987655432 23344444444 23456777888888888766543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.1e-05 Score=84.45 Aligned_cols=48 Identities=8% Similarity=-0.052 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++.+|.+..+|..++.+|...|++++|+..|+++++
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555554454555555555555555555555555555443
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.01 E-value=1.1e-05 Score=88.72 Aligned_cols=118 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
...+.+.|++++|++.++++++. .+.+...|..+...+.+.|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g------------------------------------- 54 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTE------------------------------------- 54 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhc-------------------------------------
Confidence 33455667777777777777663 1224566666776776666
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH--HHccCChHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC--YCKERKYDDCL 815 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~--~~~~g~~~~A~ 815 (902)
++++|.+.++++++.+|.+..+|..++.+|...|++++|++.|+++++.. |+... ..+..+ +.+.|++++|+
T Consensus 55 --~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 55 --CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp --CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777643 33322 444444 66677777777
Q ss_pred HHHH
Q 048778 816 EFMN 819 (902)
Q Consensus 816 ~~~~ 819 (902)
+.++
T Consensus 131 ~~~~ 134 (477)
T 1wao_1 131 AGDE 134 (477)
T ss_dssp ----
T ss_pred cccc
Confidence 7776
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=0.00029 Score=78.89 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=144.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 563 KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN----------IALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG 632 (902)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (902)
..++|.+.+++++..+. -+...|+.--..+...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34677888888887532 246667776666777676 899999999999875 668889998888888889
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc
Q 048778 633 --RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG-RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 633 --~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
++++++..++++.+.. +-+...|+.-..++.+.| .++++++.++++++. -+-|...|+.....+.+.+...++-.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999876 567888988888888888 899999999999874 23377888887777766541110000
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
. .....+.+++|.+.+++++..+|.|..+|+.+...+.+.++.++
T Consensus 200 -----------~--------------~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 -----------Q--------------GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -----------C--------------CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -----------c--------------ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0 00012378999999999999999999999999999999888555
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=0.00026 Score=62.63 Aligned_cols=111 Identities=7% Similarity=-0.026 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~ 817 (902)
+.++|.+.|++..+.+.+... |+..|...+..++|++.|+++.+.| .......|+..|.. .+++++|..+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 899999999999998755544 8888888889999999999999854 22222888888988 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 861 (902)
++++.+.| ++..+..++.+|.. .++.++|+.+++++.+.+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999864 45677888888988 8999999999999988764
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=7.6e-05 Score=63.66 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+|.+.|+++++.+|.+...+..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788899999889999999999999999999999999999999844 54443 888889999999999999999887
Q ss_pred Hc
Q 048778 823 ES 824 (902)
Q Consensus 823 ~~ 824 (902)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00015 Score=78.95 Aligned_cols=126 Identities=3% Similarity=-0.019 Sum_probs=85.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCch---HhH--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSG---VFPA---KAI--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ESHC 834 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~ 834 (902)
.+...|++++|+.+++++++.. +.|+ ... +.|+.+|..+|++++|..+++++++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567788888888888876431 2232 222 7888888888888888888888773 12 12333 7778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-Ccch-hHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 835 TVIQGLQSEGRNKQAKNLVSDLFRY-----NGI-EEKA-AVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~~~~~~~~-----~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.++.+|..+|++++|+.+++++++. |.. |+.. ....+..++...|++++|..+++++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887643 322 2222 23344455667888888888888887654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=8.4e-05 Score=62.75 Aligned_cols=77 Identities=8% Similarity=-0.041 Sum_probs=48.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------hH--HHHHHHHHccCC
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK------AI--TSIIGCYCKERK 810 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~--~~l~~~~~~~g~ 810 (902)
..|++++|.+.|+++++..|.++..|..++.+|...|++++|++.++++++ ..|+. .. ..++.++...|+
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 333777777777777777777777777777777777777777777777776 33443 11 444455555555
Q ss_pred hHHHHHH
Q 048778 811 YDDCLEF 817 (902)
Q Consensus 811 ~~~A~~~ 817 (902)
+++|...
T Consensus 94 ~~~a~~~ 100 (111)
T 2l6j_A 94 VQIPVVE 100 (111)
T ss_dssp CCCCSSS
T ss_pred HhhhHhH
Confidence 4444433
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=8e-05 Score=66.05 Aligned_cols=102 Identities=5% Similarity=-0.042 Sum_probs=76.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
.+.+.+++|++.+++.++. -+.+...|..+..++...++.+.+.. ..+.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~-----------------------------al~~~ 62 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISD-----------------------------AKQMI 62 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHH-----------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhh-----------------------------hHhHH
Confidence 3456678888888888764 13366777777777776652211100 01157
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCchHh
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-----------RIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++|+..|+++++.+|.+..+|+.++.+|...| ++++|++.|+++++ +.|+..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999999999999999999875 89999999999999 667654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00022 Score=77.78 Aligned_cols=120 Identities=8% Similarity=-0.064 Sum_probs=95.1
Q ss_pred hccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CchHhH--HHHHH
Q 048778 740 EMDVEHAFRLRDRIESC-----GGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GV-FPAKAI--TSIIG 803 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~~--~~l~~ 803 (902)
+|++++|..+++++++. ++.+ ..+++.|+..|...|++++|+.+++++++- |. .|+... +.|+.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44999999999988765 2333 567899999999999999999999998642 22 244444 89999
Q ss_pred HHHccCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 804 CYCKERKYDDCLEFMNLILE-----SGF-VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.|..+|++++|..+++++++ .|. .|+. .....+..++...|++++|..+|+++.+.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884 232 2333 66678888999999999999999998543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.60 E-value=0.0013 Score=58.11 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~ 813 (902)
.+++|.+.|+++.+. .++.++..|+..|.. .+++++|++.|+++.+.| .......|+..|.. .+++++
T Consensus 40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 555566666666554 445556666666665 556666666666665533 11112555556655 566666
Q ss_pred HHHHHHHHHHcC
Q 048778 814 CLEFMNLILESG 825 (902)
Q Consensus 814 A~~~~~~~~~~~ 825 (902)
|..+++++.+.|
T Consensus 116 A~~~~~~Aa~~g 127 (138)
T 1klx_A 116 AVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 666666666544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00025 Score=57.16 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVI 837 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 837 (902)
...+..++..+...|++++|+..++++++.. |+... ..++.+|...|++++|...++++.+. .| +...+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 3444455555555555555555555555422 22222 44555555555555555555555443 22 234444444
Q ss_pred HHHHh
Q 048778 838 QGLQS 842 (902)
Q Consensus 838 ~~l~~ 842 (902)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=7.9e-05 Score=62.91 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
+...+..+...+...|++++|++.+++.++. .+.+...+..+..++...|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g----------------------------- 52 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLG----------------------------- 52 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-----------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 4556777788888888888888888888874 2335677777777787777
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|.+.++++++.+|.+ ..++..++.++...|++++|++.+++
T Consensus 53 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 53 ----------EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----------CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----------CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888888777 77788888888888877777665544
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00023 Score=60.57 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
++|+..+++.++. .+.+...+..+...+...| ++++|...
T Consensus 2 ~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~~g---------------------------------------~~~~A~~~ 41 (115)
T 2kat_A 2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHE---------------------------------------QFDAALPH 41 (115)
T ss_dssp CCHHHHHHHHHTT-TCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred hHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcc---------------------------------------CHHHHHHH
Confidence 3567778888763 2336778888888888888 99999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
|+++++.+|.+...|..++.+|...|++++|+..|+++++
T Consensus 42 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 42 LRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00028 Score=58.25 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|.++.++..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|+..+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666777777777777777777777777777633 43333 6667777777777777777776654
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.0011 Score=53.14 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+
T Consensus 24 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444444444444444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.00033 Score=57.77 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=48.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|++++|++.|+++++.+|.+..+|..++.+|...|++++|++.|+++++
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333999999999999999999999999999999999999999999999987
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.40 E-value=0.0054 Score=59.82 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchH-hH--HHHHHHHHc-cC
Q 048778 741 MDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRA-----GRIVEADRIMKDIMKSGVFPAK-AI--TSIIGCYCK-ER 809 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~-~~--~~l~~~~~~-~g 809 (902)
+...+|...++++++++|. +..+|..|+..|... |+.++|.++|+++++ +.|+. .. ...++.++. .|
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 3788999999999999988 778999999999995 899999999999998 55653 33 777777777 48
Q ss_pred ChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 810 KYDDCLEFMNLILESGFV--PSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+.++|.+++++.+..... |+.... ..+.-++|..++++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~ 294 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAH 294 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHH
Confidence 889999999988876444 443322 23444566666554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.35 E-value=0.0011 Score=67.63 Aligned_cols=120 Identities=13% Similarity=-0.020 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---C--CHH--HHH-HHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA---G--RIV--EAD-RIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~~~--~A~-~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+|..+|+++++.+|....+|..++.+|... + ... +++ ..++........|.... ..++..+...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 779999999999999999999999888777521 1 111 111 12222222112233333 5566666678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++|...+++++..+ |+...|..++.++.-.|++++|++.+++++...+.+
T Consensus 294 d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 294 DESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999864 887888889999999999999999999998876544
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.21 E-value=0.024 Score=55.34 Aligned_cols=126 Identities=7% Similarity=0.049 Sum_probs=90.6
Q ss_pred hcCCCCHHHHHHHHHHH---Hhc--C------CHHHHHHHHHHHHHcCCCch--HhH--HHHHHHHHcc-----CChHHH
Q 048778 755 SCGGSTTDFYNFLVVEL---CRA--G------RIVEADRIMKDIMKSGVFPA--KAI--TSIIGCYCKE-----RKYDDC 814 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~---~~~--g------~~~~A~~~~~~~~~~~~~p~--~~~--~~l~~~~~~~-----g~~~~A 814 (902)
+.++.+...+...+.+. ... | ...+|..+++++++ +.|+ ... ..++..|... |+.++|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 33466666555444433 222 3 35788999999999 5566 433 7788888884 999999
Q ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC--CcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 815 LEFMNLILESGFVP--SFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGI--EEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 815 ~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
.++|+++++. .| +..++...++.|+.. |+.++|.+++++++..+.. |+... ...+...+|..+++
T Consensus 224 ~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~ 293 (301)
T 3u64_A 224 HTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKA 293 (301)
T ss_dssp HHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHH
Confidence 9999999985 56 478888899999885 9999999999999998877 55432 22344556767666
Q ss_pred HHH
Q 048778 890 LID 892 (902)
Q Consensus 890 ~~~ 892 (902)
++.
T Consensus 294 ~~~ 296 (301)
T 3u64_A 294 HVQ 296 (301)
T ss_dssp THH
T ss_pred HhH
Confidence 554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.00056 Score=56.17 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=59.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCCh
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTD-FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKY 811 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~ 811 (902)
.+..+.+.|++++|.+.++++++.+|.+.. .|..++.+|...|++++|++.|+++++. .|+.... ... +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~-~~~-----~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPAL-QAR-----KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHH-HHH-----HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHH-HHH-----HHH
Confidence 344556667999999999999988888888 8999999999999999999999998884 4544320 000 445
Q ss_pred HHHHHHHHHHH
Q 048778 812 DDCLEFMNLIL 822 (902)
Q Consensus 812 ~~A~~~~~~~~ 822 (902)
.+|...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0027 Score=67.89 Aligned_cols=87 Identities=6% Similarity=-0.021 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCchH---hH--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKS---GVFPAK---AI--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ESHCTVI 837 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~---~~~p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~~l~ 837 (902)
..|++++|+.+++++++. -+.|+. .. +.|+.+|..+|++++|..+++++++ .| -.|+. .+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888877642 122332 22 7788888888888888888888773 12 13444 7788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048778 838 QGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 838 ~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.+|..+|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.87 E-value=0.0039 Score=54.52 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc-h-HhH-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMKSGVFP-A-KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~-~~l~~~~~~~g~~~~A~ 815 (902)
.+..+.+.|.+..+.++++..+...+++++.+.+ +.++++.+++...+.. .| + .-. ..++-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 7778888888888888889999999999999988 6679999999998854 24 2 222 88888899999999999
Q ss_pred HHHHHHHHcCCCCCH
Q 048778 816 EFMNLILESGFVPSF 830 (902)
Q Consensus 816 ~~~~~~~~~~~~p~~ 830 (902)
++++.+++. +|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 999999884 6753
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.83 E-value=0.0062 Score=48.91 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
.++|..+++++++.+|.++.++..++..+.+.|++++|+..|+++++.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 577777777777777777777777777777777777777777777763
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.0092 Score=60.96 Aligned_cols=138 Identities=6% Similarity=-0.100 Sum_probs=93.2
Q ss_pred hcCCCCHHHHHHHHHHH--HhcC---CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc---cC-Ch-HH--HH-HHHH
Q 048778 755 SCGGSTTDFYNFLVVEL--CRAG---RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK---ER-KY-DD--CL-EFMN 819 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~---~g-~~-~~--A~-~~~~ 819 (902)
...|.+..+|.....+. ...+ ...+|+.+|+++++ ..|+... ..+..+|.. .+ .. .. ++ ..++
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33477888888776654 3333 46899999999999 6687655 444444431 11 11 11 11 1222
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 820 LILESGF-VPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 820 ~~~~~~~-~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
....... ..+..+|..++..+...|++++|+..+++++... |+...|..++..+.-.|++++|++.+++......
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2111112 3356788888777778899999999999998886 5666776777778889999999999998876643
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.73 E-value=0.0042 Score=66.44 Aligned_cols=83 Identities=8% Similarity=-0.086 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CchHhH--HHHHHH
Q 048778 741 MDVEHAFRLRDRIESC-----GGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GV-FPAKAI--TSIIGC 804 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~~--~~l~~~ 804 (902)
|++++|..++++.++. +|.+ ..+++.|+..|...|++++|+.+++++++- |. .|+... +.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3899999999998774 3444 456889999999999999999999998742 32 344444 899999
Q ss_pred HHccCChHHHHHHHHHHHH
Q 048778 805 YCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~ 823 (902)
|..+|++++|..+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999999875
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.01 Score=63.59 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCchHh---H--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HH
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSG---VFPAKA---I--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ES 832 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~ 832 (902)
+..+...|++++|+.+++++++.. +.|+.. . +.++.+|...|++++|+.+++++++ .| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999998532 233332 2 8889999999999999999998884 12 23444 78
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.++..|..+|++++|+.+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999998643
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.61 E-value=0.0022 Score=52.42 Aligned_cols=82 Identities=7% Similarity=0.100 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
....+.+.|++++|+..++++++. .+.+.. .+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~----------------------------------- 49 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLG----------------------------------- 49 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcC-----------------------------------
Confidence 345566667777777777777653 122445 5666666666666
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++++|.+.|+++++.+|.+..++.. +.+.+|...|++..
T Consensus 50 ----~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 50 ----DWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDM 88 (99)
T ss_dssp ----CHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTT
T ss_pred ----CHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHh
Confidence 7777777777777777666665532 33455555554443
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.59 E-value=0.0073 Score=48.48 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 758 GSTTDFYNFLVVELCRAGR---IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
|+++..+..++.++...++ .++|..+++++++ ..|+... ..++..+.+.|++++|+.+|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777777777777765554 6788888888877 4566555 66677777777777777777777764
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.075 Score=47.72 Aligned_cols=128 Identities=9% Similarity=0.084 Sum_probs=94.2
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~ 816 (902)
....|+++.|.++.+++ .+...|..|+......|+++-|++.|++..+ ...+.-.|.-.|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 34567999999998776 5788999999999999999999999998743 1456667888899888887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
+.+.....| -++....++...|+++++++++.+ .+..|... ......|.-+.|.++++++.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 777776654 234444556688999999999987 34333221 11223677788888887763
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.42 E-value=0.01 Score=63.55 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=68.5
Q ss_pred hccHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHhH--HHHHH
Q 048778 740 EMDVEHAFRLRDRIESCG-----GST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----G-VFPAKAI--TSIIG 803 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~--~~l~~ 803 (902)
.|++++|..+++++++.. +.+ ..+++.|+..|...|++++|+.+++++++- | -.|+... +.|+.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 339999999999998752 444 457889999999999999999999988742 2 2344444 89999
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 048778 804 CYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~ 823 (902)
.|...|++++|..+++++++
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.17 Score=59.83 Aligned_cols=63 Identities=16% Similarity=0.000 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSS 701 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 701 (902)
..++..+.+.|..++|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555566666666554321 10 1122234556666666654322 3445666666666666
Q ss_pred C
Q 048778 702 N 702 (902)
Q Consensus 702 ~ 702 (902)
+
T Consensus 695 ~ 695 (814)
T 3mkq_A 695 F 695 (814)
T ss_dssp T
T ss_pred C
Confidence 6
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.31 E-value=0.22 Score=41.66 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=90.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
..-.|.+++..++..+.... .+..-++..+.-....-+-+-..++++.+=+- ..-+.-. ..++.+|...|...
T Consensus 17 ~ildG~v~qGveii~k~~~s--sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n~~s-- 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLN-- 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCC--
T ss_pred HHHhhhHHHHHHHHHHHcCC--CCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhcchH--
Confidence 33456999999999998874 55555666666666666666656666555321 1111111 55666666554433
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+..+...+.+..+|+.++-.+++..++. ...|++.....+..+|.+.|+..+|.+++++.=++
T Consensus 92 ----------------e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 ----------------EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444455567778888888888887544 33455666677888888888888888888888888
Q ss_pred Ccc
Q 048778 895 HYR 897 (902)
Q Consensus 895 ~~~ 897 (902)
|.+
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 865
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.31 E-value=0.16 Score=42.48 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
+-+.-.+++..++...++++.....++.+|.+.|+..+|.+++.++-++|++
T Consensus 106 KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 8888888888877766888999999999999999999999999999888753
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.016 Score=50.66 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKER---KYDDCLEFMNLILESGFVP--SFESHCTVIQGLQSEGRNKQA 849 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A 849 (902)
....+.+.|.+..+.+. ++..+ ..+++++++.+ ++++++.+++...+.. .| ..+.+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 46677888888877665 44444 99999999988 7779999999999763 36 357888899999999999999
Q ss_pred HHHHHHHHhCCCC
Q 048778 850 KNLVSDLFRYNGI 862 (902)
Q Consensus 850 ~~~~~~~~~~~~~ 862 (902)
.++++++++..+.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999887643
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.96 E-value=0.074 Score=43.67 Aligned_cols=79 Identities=10% Similarity=-0.030 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCc
Q 048778 651 PNHITYSILVRAHASTGRLDHAFKIVSFMVANG------CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLE 724 (902)
Q Consensus 651 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (902)
.+..-+..++..+.+.|+++.|..+++.+.+.. -.+...++..|..++.+.|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---------------------- 60 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---------------------- 60 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT----------------------
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc----------------------
Confidence 345556678888999999999999999887631 1234567777777888877
Q ss_pred CCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048778 725 HDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV 768 (902)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 768 (902)
++++|...++++++..|.+..+...+.
T Consensus 61 -----------------~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 61 -----------------DLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp -----------------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999988766664
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.04 Score=45.33 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=38.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 731 ERSSKNFLREMDVEHAFRLRDRIESCG-------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 731 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..++..+.+.++++.|...|+.+++.. +.....+..|+.+|.+.|++++|+..++++++ +.|+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 344444455557777777777766542 23455666667777777777777777777666 34544
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.54 E-value=0.21 Score=42.86 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCchHhH--H--HHHHH----HHccCChHHHHHHHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRI------VEADRIMKDIMKSGVFPAKAI--T--SIIGC----YCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~~--~--~l~~~----~~~~g~~~~A~~~~~~~~~ 823 (902)
|.|+.+|...+....+.|+. ++.+++|+++... +.|+... . ..++. +...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88999999999999988998 8999999999874 4554321 2 22221 3456899999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcch
Q 048778 824 SGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKA 866 (902)
Q Consensus 824 ~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 866 (902)
.+ +-=...|...++.=.++|+..+|.+++.+++.++..|...
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 42 1115666666666678999999999999999988776543
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.46 E-value=0.61 Score=54.98 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
..++..+.+.|..++|+++.++. .. -.......|++++|.++.+. ..+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~---~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQ---KFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HH---HHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc---------ch---heehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 44555556666666666544211 10 12223456777777766432 24567777777777777
Q ss_pred CCHHHHHHHHHHH
Q 048778 667 GRLDHAFKIVSFM 679 (902)
Q Consensus 667 g~~~~A~~~~~~m 679 (902)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 8877777777766
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.38 E-value=0.08 Score=44.41 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCch--HhH-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE---ADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~~~A~ 815 (902)
.+..+.+-|.+....++++..+-..+++++.+..+..+ ++.+++.+.+.+ .|. .-. ..|+-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 44445555555555455555555556666655554433 555555555432 121 111 45555555555555555
Q ss_pred HHHHHHHH
Q 048778 816 EFMNLILE 823 (902)
Q Consensus 816 ~~~~~~~~ 823 (902)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.83 E-value=7.8 Score=44.90 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 445 TYNILVDGFCREGQLDIALKIFNSMSI 471 (902)
Q Consensus 445 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 471 (902)
-|..++..+.+.++.+.+.++|.++.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677888889999999999999874
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.76 E-value=0.29 Score=42.06 Aligned_cols=115 Identities=7% Similarity=-0.005 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCC
Q 048778 650 SPNHITYSILVRAHASTGRL------DHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSR 722 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (902)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+....+--
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 34566777777777766777 7777777777764 55532 12222222211111
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+...++.++|.++|+.+++....=...|...+..-.++|+...|..++.+++..+.+|....
T Consensus 69 -------------~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 69 -------------ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp -------------HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred -------------HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 001123899999999999877644478888888888899999999999999999887776654
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.43 E-value=0.15 Score=42.73 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDD---CLEFMNLILESGFVP--SFESHCTVIQGLQSE 843 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~ 843 (902)
..........+.+-|.+....|. +...+ ..++|++.+..+... ++.+++.+.+.+ .| .-+....++-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh
Confidence 33344456677777777766554 44455 899999999887666 899999987753 35 337777888899999
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 048778 844 GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~ 862 (902)
|++++|..+++.+++..+.
T Consensus 88 g~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 9999999999999877643
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.43 E-value=4.6 Score=44.92 Aligned_cols=262 Identities=11% Similarity=0.082 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
+..+..+.+.+++...+..+.. .+.+...-.....+....|+..+|....+.+-..| .........++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3345556667777766664432 13345444556667777888777777777776555 34455566777777766
Q ss_pred CCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh-hccH
Q 048778 667 GRLDH--AFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR-EMDV 743 (902)
Q Consensus 667 g~~~~--A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 743 (902)
|.... ...-+..+...| +......++..+ + ..+....+.... ..+.
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l---~-------------------------~~~~~~a~~~~al~~~p 198 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM---P-------------------------ADYQTIASAIISLANNP 198 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC---C-------------------------GGGHHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC---C-------------------------HHHHHHHHHHHHHHhCh
Confidence 65543 333333333322 222222222111 0 000000000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHhH---HHHHHHHHccCChHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDF--YNFLVVELCRAGRIVEADRIMKDIMKSG-VFPAKAI---TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~---~~l~~~~~~~g~~~~A~~~ 817 (902)
..+.. .....+++... ...++-......+.+.|...+....+.. +.+.... ..++..+...+...++...
T Consensus 199 ~~~~~----~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~ 274 (618)
T 1qsa_A 199 NTVLT----FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKW 274 (618)
T ss_dssp GGHHH----HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHH
T ss_pred HhHHH----HHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 00000 00000111111 1111111122236677777777775433 2222221 3333344444534566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-EEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
+...... .++.....+.+....+.|+++.|...++++...... +....| ++.++.+.|+.++|..+++.+.+
T Consensus 275 ~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 275 RDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 6654432 233333444444445668888888888775332111 111223 45566677888888887777654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.07 E-value=2.6 Score=37.73 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=57.7
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHH
Q 048778 242 HCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDK 321 (902)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 321 (902)
...+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....+ +..+.-.|...|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34567777777776654 2456677777777777777777777766543 3344444445566555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048778 322 ALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKM 364 (902)
Q Consensus 322 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 364 (902)
-.++-+....+| -++.....+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 554444443332 2334444455556666666666443
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.00 E-value=1.1e-05 Score=83.11 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=170.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 048778 161 NYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVL 240 (902)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 240 (902)
...+|..|..+..+.+++.+|++.|-+. -|+..|..++.+..+.|.+++-...+....+. ..+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4468999999999999999999887643 34556889999999999999999988777665 445566678999
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChH
Q 048778 241 GHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTD 320 (902)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 320 (902)
+|+|.+++.+-.++ .. .||+.-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 125 ayAk~~rL~elEef----l~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTST----TS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHH----Hc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 99999987664333 22 48888888899999999999988877754432 333444455666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048778 321 KALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALME 400 (902)
Q Consensus 321 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (902)
.|.+.-++ ..+..||..+-.+|...+.+.-|.-.--.+.-. +| -...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 66543322 125667777777788777777665443333321 11 12234555667788888777777765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHhcCCHHHHH
Q 048778 401 KRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDG-GLF------PDEITYNILVDGFCREGQLDIAL 463 (902)
Q Consensus 401 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~------~~~~~~~~ll~~~~~~g~~~~A~ 463 (902)
.. -+.....|+-|.-.|++- ++++-++-++..-.+ +++ -....|.-++-.|++-.+++.|.
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 32 134556666666666654 334433333322111 110 12334555666666666666553
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.68 E-value=0.19 Score=44.27 Aligned_cols=112 Identities=6% Similarity=0.008 Sum_probs=68.6
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC--CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHhH--H
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG--GST-------TDFYNFLVVELCRAGRIVEADRIMKDIMKSG-VFPAKAI--T 799 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~ 799 (902)
..++.++..+.++.|+-+.+.++... +++ ..++..++.++...+++..|...|+++++.. .-+.... .
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34455666669999998888876664 333 2367888999999999999999999986422 1111111 0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.+. ....... .....++.+.-..++.||.+.|++++|+.+++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 010 0000000 0112335566677888999999999999888774
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.71 E-value=0.00025 Score=73.31 Aligned_cols=264 Identities=10% Similarity=0.084 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...|..|..+....+.+.+|++-|-+. .|...|..+|.+..+.|.+++-++++....+.. -+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345666666666666666665544222 244456677777777888888777776665442 222333567778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|.+.++..+-.+++ -.||..-...+.+-|...|.++.+.-+++..-. |.+++.++.+.|+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------------~akLAstLV~L~~ 185 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------FGRLASTLVHLGE 185 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------CTTTSSSSSSCSG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------HHHHHHHHHHHHH
Confidence 88888776654443 245655566677778888877777766655432 4455566666777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+..|.+.-++ ..++.+|..+..++...+.+.-|...--.++ +.||.. ..++.-|...|.++|-+.+++.-+
T Consensus 186 yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL-~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 186 YQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADEL-EELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp GGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCC-SGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHH-HHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777654433 3577889999889999998888877665555 233322 446777888999999999988876
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-------chhHHHHHHHHhcCCcHhHHH
Q 048778 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-------KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 823 ~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~ 885 (902)
... ......+..|+-.|.+- +.++-.+.++...+.-..|- .-.|..+...|.+-.+|+.|.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 321 34456677777777654 44555444443211111111 223555565566666666554
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.82 E-value=1.5 Score=37.34 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048778 758 GSTTDFYNFLVVELCRAGR---IVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS 829 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 829 (902)
.++..+-..+++++.+..+ ..+++.+++.+.+.+..-..-. ..|+-++.+.|++++|.++.+.+++. +|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5666777777777777764 3467777777776443222333 66777777777777777777777763 564
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.21 E-value=1.5 Score=36.89 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGG-STTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..+++.+++++.+.+| .....+..|+-++.+.|++++|.+..+.+++
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444444444432 2233444444445555555555555544444
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.18 E-value=1.4 Score=37.05 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=53.4
Q ss_pred CchHhH-HHHHHHHHccCC---hHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 793 FPAKAI-TSIIGCYCKERK---YDDCLEFMNLILESGFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 793 ~p~~~~-~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.|...+ ..++|++.+..+ ..+++.+++.+.+.+ | ..+.+..++-++.+.|++++|.++.+.+++..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344455 888999988774 557889999988754 5 3477888889999999999999999998776543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.02 E-value=28 Score=40.49 Aligned_cols=260 Identities=10% Similarity=-0.005 Sum_probs=122.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 048778 521 DGHCKNGKTGEALMIFERMVQNTDLKTP--HVLNSFLDVLCKENKLKEEYAMFGKILKFGL--V-----PSVVTYTILVD 591 (902)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-----p~~~~~~~li~ 591 (902)
-+....|+.++++.+++..+..+...+. ..-..+.-+....|..+++..++...+...- . +....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3556677777777777665542111222 2223334445555655667776666554211 0 11112222323
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhc
Q 048778 592 GLFRAGN-IALAMSMIEVMKLAGCPPNVHTYTVII--NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS--ILVRAHAST 666 (902)
Q Consensus 592 ~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~ 666 (902)
+++-.|. -+++.+.+..+.... .+.......+. ..++-.|+-+-...++..+.+. .+..... .+.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333332 245556666555432 11111122222 2334556666666666665553 1223333 333334466
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
|+.+.+..+++.+... ..|....-..+..++.-.| .|+....
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaG-------------------------------------TGn~~aI 579 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAG-------------------------------------TGNNSAV 579 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT-------------------------------------SCCHHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC-------------------------------------CCCHHHH
Confidence 7877777777777652 2222222222333333333 1265555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCC-hHHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERK-YDDCLEFMNLILE 823 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~-~~~A~~~~~~~~~ 823 (902)
.++++.+.+....+..-...++-++...|+.+.+.++++.+.+.+ .|..-. ..++-+....|. ..+|+..+..+..
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 557777765433333333344444555566666666666555432 233222 333333333333 2567777777764
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.96 E-value=0.95 Score=51.34 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHH
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
+..+...|+++-|+++.+++.. ..|+++. ..|+.+|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344455566666666666655 4455444 55666666666666666555544
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.65 E-value=1.1 Score=50.76 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
+++-|.++.+++...-|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999888876
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.56 E-value=3.7 Score=35.02 Aligned_cols=70 Identities=14% Similarity=0.001 Sum_probs=54.6
Q ss_pred CchHhH-HHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 793 FPAKAI-TSIIGCYCKERK---YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 793 ~p~~~~-~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.|...+ ..++|++.+..+ ..+++.+++.+.+.+..-.-+....++-++.+.|++++|.++.+.+++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455555 889999998775 5578899999887532223477788889999999999999999999887643
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.01 E-value=5.5 Score=41.29 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=24.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
+..+...|++.+|.+++.++.+.- .++ ...+..-+..|...+++.++...+.++
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444555555555554444321 111 122333344455555555555555444
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.92 E-value=3.3 Score=36.43 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCch-----HhH---HHHHHHHHccCChHHHHHHHHHHHHc-CCCCCH-HH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSG-VFPA-----KAI---TSIIGCYCKERKYDDCLEFMNLILES-GFVPSF-ES 832 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-----~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~ 832 (902)
+..-+..+...|.++.|+-+...+.... ..|+ ... ..+++++...|++.+|...|+++++. ..-+.. ..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556777888888888877754321 1122 222 66778888888888888888887631 111211 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+..+ .-...... ......+...-+.+..++.+.|++++|+.+++.+..+
T Consensus 103 ~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111 00000000 0112233444556788899999999999999976433
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.41 E-value=21 Score=37.02 Aligned_cols=236 Identities=8% Similarity=-0.020 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPN---VHTYTVIINGLCQR-GRFKEAEMLLFKMFDLGVSPNHITY- 656 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 656 (902)
......|...|.+.|+.++..+++.....- +.-|- ......++..+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455677889999999999999999877541 11122 23456777777664 44555566666665422 1122233
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 -----SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 -----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..++..|...|++.+|.+++.++.+.=-..|..+ .++.. |-
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~--~llev--------------------------------~l 143 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKN--LLVEV--------------------------------QL 143 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH--HHHHH--------------------------------HH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--hHHHH--------------------------------HH
Confidence 2688999999999999999999987533333322 22222 22
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC---CCCHHHH----HHHHHHHH-hcCCHHHHHHHHHHHHHcC--C-CchH--hH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG---GSTTDFY----NFLVVELC-RAGRIVEADRIMKDIMKSG--V-FPAK--AI 798 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~--~-~p~~--~~ 798 (902)
.-++.+...+++..+...+.++.... ++++... ..-|..+. ..++|.+|...|-+..+.- . .|.. ..
T Consensus 144 le~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~l 223 (394)
T 3txn_A 144 LESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSL 223 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 33455666779999999998886553 2444322 22234556 7889999999887775321 1 1211 11
Q ss_pred -HHHHHHHHccCChHHHHHHHH-HH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 799 -TSIIGCYCKERKYDDCLEFMN-LI-LESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++-+.. .++..+-..++. .. ... ..|+...+..++.++ ..|++.+...+++..
T Consensus 224 kYlvL~aLl-~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 224 KYMLLCKIM-LGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHH-TTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHH-cCCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 22232232 333333333332 22 222 356666666676666 778998888887763
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.18 E-value=17 Score=38.60 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 048778 597 GNIALAMSMIEVMKL-----AGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 597 g~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
|+++.|++.+-.+.+ .+..-.......++..|...|+++...+.+.-+... |. -......+++.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~-------- 99 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQK-------- 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHH--------
Confidence 677888777765553 223334556777778888888888777766655432 21 12222222221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC---CcchhhhhhhhhhhhccHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH---DDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+..++... ..++..+...++..+.... + ..+-. .......+++.+...|++.+|.
T Consensus 100 -~~~~l~~~----~~~d~~~~~~~i~~l~~vt---e--------------~kiflE~erarl~~~La~i~e~~g~~~eA~ 157 (445)
T 4b4t_P 100 -VMEYLKSS----KSLDLNTRISVIETIRVVT---E--------------NKIFVEVERARVTKDLVEIKKEEGKIDEAA 157 (445)
T ss_dssp -HHHHHHHH----CTTHHHHHHHHHHCCSSSS---S--------------CCCCCCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -HHHHHhcC----CchhHHHHHHHHHHHHHHh---c--------------cchHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 12222221 1223334444443322211 0 00000 0011233445556666777776
Q ss_pred HHHHHHHhc-C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHhH---HHHHHHHHccCChHHH
Q 048778 748 RLRDRIESC-G-GST----TDFYNFLVVELCRAGRIVEADRIMKDIMK----SGVFPAKAI---TSIIGCYCKERKYDDC 814 (902)
Q Consensus 748 ~~~~~~~~~-~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~---~~l~~~~~~~g~~~~A 814 (902)
+++..+... . ..+ ...+..-+..|...+++..|..++.++.. ....|+... ...+..+.+.+++.+|
T Consensus 158 ~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 158 DILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 666665421 1 111 23444555566666666666666666531 111122111 4445555666666666
Q ss_pred HHHHHHHHH
Q 048778 815 LEFMNLILE 823 (902)
Q Consensus 815 ~~~~~~~~~ 823 (902)
.+.|..+.+
T Consensus 238 ~~~y~e~~~ 246 (445)
T 4b4t_P 238 AQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.85 E-value=12 Score=35.90 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDC 814 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A 814 (902)
...+.|++++|+......++.+|.|...-..|...+|-.|+|+.|..-++...+ +.|+... ..+.... =.|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~l------I~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHL------VKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH------HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHH------HHH
Confidence 345567999999999999999999999999999999999999999999999988 5576553 2222222 234
Q ss_pred HHHHHHHHHcCCCCC----H-HHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 048778 815 LEFMNLILESGFVPS----F-ESHCTVIQGL--QSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~----~-~~~~~l~~~l--~~~g~~~~A~~~~~~~~~~ 859 (902)
...-.....-+-.|. + .-...++.++ ...|+.++|.++-.++.+.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 444444444333442 1 2223344433 3579999999999888655
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.82 E-value=27 Score=37.11 Aligned_cols=94 Identities=10% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HH
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILK--FGLVPS---VVTYTILVDGLFRAGNIALAMSMIEVMKL----AGCPPNV--HT 620 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~ 620 (902)
..|...+...|++.+|..++..+.. .|.... +..|..-++.|...+++..|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888887753 222211 34566667778888888888888777532 2222332 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666677777888888887777765
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.05 E-value=29 Score=34.49 Aligned_cols=166 Identities=10% Similarity=0.010 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 048778 342 TVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFEL----LALMEKRTCKPNIRTYNELMEG 417 (902)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~li~~ 417 (902)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++ ++...+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444446666667766665544322 13344554444443 3444455666666666666555
Q ss_pred HHhcCCHH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 418 LCRMNKSY-KAVHLLKRVV----DGG--LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK 490 (902)
Q Consensus 418 ~~~~g~~~-~A~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (902)
+......+ .=.+++++++ +.| ..-++.....+...|.+.|++.+|...|-. |...+...+..++.-+.+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence 54422111 1122222222 222 224667777788888888888888877641 111134444444443333
Q ss_pred c---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 491 L---GKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 491 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (902)
. |...++ +...-.++ -.|.-.++...|..+|+...+
T Consensus 178 ~~~~~~~~e~--------------dlf~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 178 QVDDIEDSTV--------------AEFFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTTCCCHHHH--------------HHHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred hcCCCCcchH--------------HHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 3 333222 11111222 234456777778777776543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.60 E-value=31 Score=34.50 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 440 FPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519 (902)
Q Consensus 440 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 519 (902)
.-|+.....+...|.+.+++.+|...|- . |..+....+..++.-+.+.+...++ +...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH
Confidence 3466667777888888888888888772 2 3223335665554444333322211 22222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 048778 520 ADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~ 541 (902)
+ .|.-.++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 2 34556777777776666543
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.70 E-value=3.6 Score=43.04 Aligned_cols=57 Identities=9% Similarity=0.101 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-----KSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 798 (902)
+.++|...+..+...+|-+...|..|+.+|...|+..+|++.|++.. +.|+.|...+
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 78888888888777777788788888888888888888888777764 3366666554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.22 E-value=23 Score=43.14 Aligned_cols=129 Identities=17% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 306 YTVLIKALCDISLTDKALSLFDEMVVKRCKPN----AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLIN 381 (902)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 381 (902)
|..++..+-+.+.++.+.++-....+....-+ ...|..+.+.+...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 55666666677777777766665554321111 12466677777777777777777766665432 3445556666
Q ss_pred HHHHcCC------------hHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 048778 382 GYCKQGR------------IIAAFELLALMEKRT--CKPNIRTYNELMEGLCRMNKSYKA-VHLLKRVVD 436 (902)
Q Consensus 382 ~~~~~g~------------~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A-~~~~~~~~~ 436 (902)
.+|..|. .++..+++..-.+.. +.....-|..|=..+...|++-+| .-+++.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 6665543 344444544322211 111112345555555566666544 445555443
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.80 E-value=7.3 Score=40.67 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF-----DLGVSPNHITYSI 658 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 658 (902)
...++..+...|++++|+..+..+.... +-+...|..+|.++...|+..+|++.|+.+. +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456677788899999988888887763 6678888899999999999999988888775 3588888765443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.12 E-value=8.2 Score=40.97 Aligned_cols=119 Identities=10% Similarity=-0.053 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCG---GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~ 815 (902)
..++-.+......+.. ..-..++..++..|.+.|++++|.+.|.++.+....+.... ..++..+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344444444444432 22334677899999999999999999999987655554444 67778888899999999
Q ss_pred HHHHHHHH---cCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 816 EFMNLILE---SGFVPSFES--HCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 816 ~~~~~~~~---~~~~p~~~~--~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
..++++.. .+-.|+... ...-+..+...+++.+|...|-++....
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99988863 332343321 1222334456788988888887765443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.12 E-value=21 Score=43.47 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
..++..+...+.++-|.++..- ++.+...--.++.+|...|++++|.+.|++..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3566777788888777654432 24455555567888999999999999998764
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.48 E-value=7.3 Score=30.75 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHH
Q 048778 214 RAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLI 275 (902)
Q Consensus 214 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 275 (902)
-+.++.++.+...++.|++.+..+.++++-|.+++..|.++|+.++.+ +.+....|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHH
Confidence 344455555555566666666666666666666666666666666653 223333454444
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.12 E-value=53 Score=32.58 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCG 362 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~ 362 (902)
+......+...|.+.|++.+|+.-|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777777777777776553
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.92 E-value=56 Score=32.71 Aligned_cols=173 Identities=9% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIV----SFMVANGCQLNSNVYSALL 695 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~l~ 695 (902)
+|.++..-|.+.+++++|++++..-. ..+.+.|+..-|.++. +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44455555777777777777654322 1233444444443333 3333446666666666666
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
..+.... +... ++..-+++|++.-.+.-...-.|+..+..++..|.+.+
T Consensus 102 ~L~~~~~----------------------~~~p---------~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~ 150 (336)
T 3lpz_A 102 GCLRLFQ----------------------PGEP---------VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG 150 (336)
T ss_dssp HHHTTSC----------------------TTCH---------HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCC----------------------CCCc---------HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC
Confidence 5554433 0000 01112333433333321112567888899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCch-HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPA-KAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
++.+|...|- . |-.+. .....++.-+...+...++--++-++ +-.|.-.|+...|...++
T Consensus 151 ~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRa---------------VL~yL~l~n~~~A~~~~~ 211 (336)
T 3lpz_A 151 EFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCARA---------------VLPYLLVANVRAANTAYR 211 (336)
T ss_dssp CHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHHH---------------HHHHHHhCCHHHHHHHHH
Confidence 9999988773 2 23333 22233333333322222222222221 223446788888887666
Q ss_pred HHH
Q 048778 855 DLF 857 (902)
Q Consensus 855 ~~~ 857 (902)
...
T Consensus 212 ~f~ 214 (336)
T 3lpz_A 212 IFT 214 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.37 E-value=9.7 Score=30.06 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 636 EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+..+-++.+....+.|++....+.+.+|.+.+++.-|.++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.56 E-value=23 Score=27.85 Aligned_cols=79 Identities=9% Similarity=0.026 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
...++|..+-+.+...|. ...+--+-+..+...|++++|..+.+... .||...|-.+-. .+.|.-+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 355666666666666553 22222333455677788888888776554 488888766643 566777777777
Q ss_pred HHHHHHCC
Q 048778 291 KDEMCEKG 298 (902)
Q Consensus 291 ~~~m~~~g 298 (902)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 76666654
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.22 E-value=25 Score=33.82 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
..+.|+.++|+.....-++.. +-|...-..++..+|-.|++++|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666666666666666554 55666666667777777777777666666655
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.76 E-value=25 Score=37.12 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=69.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcchh--HHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY---NGIEEKAA--VLPY 871 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~~l 871 (902)
..++..|.+.|++++|.+.+.++.+.-..+ -.+.+...++++...|++..+..+++++... +..++... ....
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 789999999999999999999998643233 3477888889999999999999999998543 22222221 1122
Q ss_pred HHHHhcCCcHhHHHHHHHHHH
Q 048778 872 IEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 872 ~~~~~~~g~~~~a~~~l~~~~ 892 (902)
+-.+...++|.+|-+.|-+..
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHh
Confidence 333567899999888776654
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.43 E-value=15 Score=30.81 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHH
Q 048778 213 VRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIH 276 (902)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 276 (902)
.-+.++-++.+...++.|++.+..+-++++-|.+++..|.++|+.++.+ +.+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3345555566666677777777777777777777777788887777763 3344445655544
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.17 E-value=22 Score=27.90 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
...++|..+-+.+...|. ...+--+-+..+...|++++|..+.+... .||...|-.+-. .+.|.-+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 355666666666665543 22222233455677788888877765544 478877766643 567777777777
Q ss_pred HHHHHHCC
Q 048778 291 KDEMCEKG 298 (902)
Q Consensus 291 ~~~m~~~g 298 (902)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 76666654
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.66 E-value=43 Score=28.11 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 697 (902)
-+..+-++.+...++.|++.....-+.+|.+.+++.-|.++++-.+.+ +.+...+|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 345555556666666777777777777777777777777777666654 33334455555543
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=66.02 E-value=38 Score=30.92 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 742 DVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
...++.++|.-|...+ ..-+..|...+..+...|++++|.++|+.-++.+-.|-..
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4778899999998887 6677888899999999999999999999999988888554
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.49 E-value=1.9e+02 Score=31.98 Aligned_cols=74 Identities=14% Similarity=-0.026 Sum_probs=36.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 449 LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGK 528 (902)
Q Consensus 449 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 528 (902)
.+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..|- ..+.....++..+.+.|.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 34455556666655553332 123444444455566666666666555555544432 133334444444444443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.78 E-value=51 Score=31.86 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=7.6
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 048778 386 QGRIIAAFELLALMEKRTC 404 (902)
Q Consensus 386 ~g~~~~A~~~~~~m~~~~~ 404 (902)
.++.....++++.+.+.|.
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHcCC
Confidence 3333333344444444443
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.56 E-value=57 Score=25.64 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
-..++|..+.+-+...+- .... ..-+..+.+.|+|++|..+.+.. ..||.+.|..+ +-.+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 368899988888876543 3333 44455678999999998887664 46787776555 556889999998888
Q ss_pred HHHHhCC
Q 048778 854 SDLFRYN 860 (902)
Q Consensus 854 ~~~~~~~ 860 (902)
.++...+
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7765554
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.11 E-value=59 Score=25.62 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
-..++|..+.+-+...+- .... ..-+..+.+.|+|++|..+.+.. ..||.+.|..+ +-.+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHH
Confidence 368899988888876543 3333 44455678999999999887765 46887776655 555889988888888
Q ss_pred HHHHhCC
Q 048778 854 SDLFRYN 860 (902)
Q Consensus 854 ~~~~~~~ 860 (902)
.++...+
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7764444
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.93 E-value=38 Score=32.83 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=8.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 048778 421 MNKSYKAVHLLKRVVDGGLFP 441 (902)
Q Consensus 421 ~g~~~~A~~~~~~~~~~g~~~ 441 (902)
.+......++++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 333333344444444444433
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.83 E-value=32 Score=29.79 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 745 HAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 745 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++.++|.-|...+ ..-+..|...+..+...|++++|.++|+..++.+-.|-..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3677777777766 5566677777777888888888888888887777677544
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.65 E-value=34 Score=32.24 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=7.8
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 048778 314 CDISLTDKALSLFDEMVVK 332 (902)
Q Consensus 314 ~~~g~~~~A~~~~~~m~~~ 332 (902)
+..|+.+....+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3344444444444433333
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.95 E-value=1.1e+02 Score=27.80 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS 829 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 829 (902)
.++..++.++|..|..+|+.-..+. ...+..+...|++.+|..+++.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788888888888877665555 7777778888888888888888887766773
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.12 E-value=39 Score=29.69 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 746 AFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 746 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
+.++|.-|...+ ..-+..|...+..+...|++.+|.++|+..++.+..|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 556666666665 5556666677777777777777777777777766666544
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.54 E-value=2.1e+02 Score=29.01 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 234 ICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
....+|.-|...|++++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 356677778888888888888877753
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.77 E-value=41 Score=31.61 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC
Q 048778 277 GLCEVGRLDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 277 ~~~~~g~~~~A~~~~~~m~~~g~~ 300 (902)
..++.|+.+-+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334455555555555544444433
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.23 E-value=1.6e+02 Score=26.75 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHcCC
Q 048778 337 NAHTYTVLIDRLCREGK 353 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~ 353 (902)
+..+-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33344444444444443
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.96 E-value=50 Score=30.89 Aligned_cols=15 Identities=0% Similarity=-0.143 Sum_probs=6.3
Q ss_pred HHhcCCHHHHHHHHH
Q 048778 453 FCREGQLDIALKIFN 467 (902)
Q Consensus 453 ~~~~g~~~~A~~~~~ 467 (902)
.++.|+.+-+..+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344444444433333
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.28 E-value=1.6e+02 Score=29.81 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR--FKEAEMLLFKMFDLGVSPNHITYSI 658 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ 658 (902)
.+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 467788889999999999999998632111 12344555556555433 4567778888887775544443333
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.94 E-value=47 Score=30.88 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 745 HAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 745 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
++..+|.-|...+ ..-+..|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5556666666665 555666667777777777777777777777766666644
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.46 E-value=1.3e+02 Score=32.13 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 742 DVEHAFRLRDRIESCGGST-------TDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
.++.|..+..+..- |.+ ...+..++..+.-.+++.+|.+.+..+..+.
T Consensus 246 ~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 246 EVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp CSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888742 322 2334567888899999999999999988754
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.32 E-value=2e+02 Score=26.01 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
+-.+.+.|+-++-+|++.| .|....-+.++-+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4468888888888888888 666666666666665555
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.81 E-value=25 Score=33.81 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=13.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcC
Q 048778 277 GLCEVGRLDEAFSLKDEMCEKGWQPS 302 (902)
Q Consensus 277 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 302 (902)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666655555555555544444
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.88 E-value=72 Score=31.12 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=8.4
Q ss_pred HHHHHHcCCHhHHHHHHHH
Q 048778 345 IDRLCREGKIDEANGMCGK 363 (902)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~ 363 (902)
+...+..|..+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334444555444444433
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.61 E-value=40 Score=31.56 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=10.2
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 048778 415 MEGLCRMNKSYKAVHLLKRV 434 (902)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~~ 434 (902)
+...++.|+.+-+..+++..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 44445556665555444443
No 291
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=39.38 E-value=2.9e+02 Score=30.80 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=14.1
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048778 840 LQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~ 856 (902)
++..|++++|++.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 36889999999998884
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.42 E-value=1.6e+02 Score=27.76 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=14.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 048778 275 IHGLCEVGRLDEAFSLKDEMCE 296 (902)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~m~~ 296 (902)
++.+....++++|++++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677777777777766544
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.10 E-value=93 Score=33.27 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILES-GFVPSF---ESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+.+++.|.+.+.++.|..+..+..-- .-.++. ..+..++.++.-++++.+|.+.+..+....
T Consensus 235 nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 235 NLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77778888888888888888877411 001121 333456777788888888888888876543
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.73 E-value=80 Score=27.72 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 812 DDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
+.+.++|..|...|+--. ...|...+..+...|++.+|.++|+..++..-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445666666665554433 355566666677777777777777776666655543
No 295
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=34.64 E-value=3e+02 Score=27.24 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=9.5
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 048778 167 CLLMSLAKLDLGFVAYAVF 185 (902)
Q Consensus 167 ~li~~~~~~g~~~~a~~~~ 185 (902)
+.+..-++.|+.+-+..++
T Consensus 27 t~L~~Av~~g~~~~V~~LL 45 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLL 45 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3344445666665444443
No 296
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.39 E-value=2.7e+02 Score=25.45 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 658 ILVRAHA---STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 658 ~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
-+|+++. +-.+.+.|+-++-+|++.|-.|....-+.++-+...-|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3444443 44788888888888888887777766666666666666
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.17 E-value=2.3e+02 Score=24.46 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 048778 635 KEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS 688 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 688 (902)
+++..+|..|...|+--. ...|......+...|++.+|.++++.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 346777777776665444 555667777777778888888888887777666643
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.32 E-value=2.7e+02 Score=25.09 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHcCC
Q 048778 337 NAHTYTVLIDRLCREGK 353 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~ 353 (902)
+..+-...+.++.+.|+
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444444
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.99 E-value=1.1e+02 Score=29.89 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=6.7
Q ss_pred HHHhcCCHHHHHHHHH
Q 048778 417 GLCRMNKSYKAVHLLK 432 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~ 432 (902)
..+..|..+-+..+++
T Consensus 167 ~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 167 ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 3344444444433333
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.59 E-value=2.4e+02 Score=27.80 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=18.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 235 CTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45667777777777777777777653
No 301
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.58 E-value=2.4e+02 Score=28.00 Aligned_cols=52 Identities=4% Similarity=-0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH---HHHHHHHHhccCCHHHHHHHHH
Q 048778 201 RSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHI---CTSLVLGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 201 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~ 256 (902)
++.|..-++.|+++.++.+++ .|..++... ..+-+...++.|+.+-+.-+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 344444567777766655543 455544221 1233445566677665554443
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.95 E-value=1.4e+02 Score=28.16 Aligned_cols=88 Identities=7% Similarity=-0.119 Sum_probs=43.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 048778 169 LMSLAKLDLGFVAYAVFVKLIAD--GFVL----SAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGH 242 (902)
Q Consensus 169 i~~~~~~g~~~~a~~~~~~~~~~--g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (902)
++.+.-..++++|+++.++..+. +.++ ........++.-...+.-.-+..+.+++.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 56667788899998888876542 2221 011122223332333333333344333322 33344444555555
Q ss_pred hccCCHHHHHHHHHHhh
Q 048778 243 CRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 243 ~~~g~~~~A~~~~~~m~ 259 (902)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 56666666666554443
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.21 E-value=2.1e+02 Score=33.75 Aligned_cols=101 Identities=9% Similarity=-0.079 Sum_probs=54.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFES 832 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 832 (902)
+...-|.++..-..++.+|...|++++|.+.|+++-. |+..+..... .......++... +. -......
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~---------~~~~~~~ll~~~-e~-~~~~~~Y 899 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA---------VLREFQEIAEKY-HH-QNLLSCY 899 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG---------GGHHHHHHHHHT-TT-CSHHHHH
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc---------chhhhhhccCcc-cc-cchhHHH
Confidence 3333355555556666777777777777777766531 2222111000 000000111100 00 0112247
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
|.+++..+.+.|.++-++++.+.+++.-...++
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 788999999999999999999999876443343
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.14 E-value=4e+02 Score=26.34 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCc----cc----cccccCCCCCCCCCcCCcchh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGV----LS----ISTSCHSDAGSSRLEHDDDDY 730 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~ 730 (902)
+.--+..+|.++.|++++++-+ |+..=...-..++..|....-.-.+ +. ...+...+....+..|....+
T Consensus 34 laadhvAAGsFetAm~lLnrQv--Givnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l 111 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQV--GVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGL 111 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHH--CBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCH
T ss_pred cHHHHHHccCHHHHHHHHHHHh--CccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCH
Confidence 4555778899999999998877 3322222222334444433311111 11 112222222111111211122
Q ss_pred h------hhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 731 E------RSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 731 ~------~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
. ..+..+...|++++|...|+.++..
T Consensus 112 ~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 112 DVVNEKMNEGYKNFKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1 2334456788888888888877654
No 305
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=30.98 E-value=3.6e+02 Score=26.53 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHH
Q 048778 429 HLLKRVVDGGLFPDEIT--YNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFT--FTSIIDGLCKLGKPELANGFFGLM 504 (902)
Q Consensus 429 ~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 504 (902)
++.+.+.+.|..++... -.+.+...++.|+.+-+.-+ .+.|..++... -.+.+...+..|+.+- .+.+
T Consensus 228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~n~~d~~g~t~L~~A~~~~~~~~----v~~L 299 (351)
T 3utm_A 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL----HKHGAKMNALDSLGQTALHRAALAGHLQT----CRLL 299 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHH
T ss_pred HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHH
Confidence 44455555554443221 12234455566776444333 34443332111 1122333445566543 3444
Q ss_pred HHCCCCC
Q 048778 505 VKKGISP 511 (902)
Q Consensus 505 ~~~~~~~ 511 (902)
.+.|..|
T Consensus 300 l~~gad~ 306 (351)
T 3utm_A 300 LSYGSDP 306 (351)
T ss_dssp HHTTCCT
T ss_pred HHcCCCC
Confidence 4555544
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.49 E-value=2.8e+02 Score=27.31 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKI 574 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~ 574 (902)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45566666666777666666664
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.33 E-value=1.3e+02 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
.+++..+|.-|...|+--. ...|...+..|...|++++|.++|+..++..-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3567777777776655443 35666777777778888888888887766665554
No 308
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.30 E-value=91 Score=21.82 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=29.7
Q ss_pred hhhhhcCCCChHHHHHHHHhcCCChHHHHHHHHHhh
Q 048778 62 ILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVC 97 (902)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~ 97 (902)
.|..++|.+++..+..||..+.++.+.|...+.-+.
T Consensus 15 ~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 15 AIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG 50 (59)
T ss_dssp HHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCc
Confidence 566788999999999999977777999988777664
No 309
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.50 E-value=2.5e+02 Score=29.16 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=9.1
Q ss_pred HHHHhccCCHHHHHHHHH
Q 048778 239 VLGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~ 256 (902)
+...++.|+.+.+..+++
T Consensus 117 L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 117 LHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334445566555555544
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.37 E-value=93 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.7
Q ss_pred hccCCHHHHHHHHH
Q 048778 243 CRGNDLKEAFKVFD 256 (902)
Q Consensus 243 ~~~g~~~~A~~~~~ 256 (902)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34455555444443
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.24 E-value=3.2e+02 Score=24.33 Aligned_cols=16 Identities=13% Similarity=-0.093 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 048778 337 NAHTYTVLIDRLCREG 352 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g 352 (902)
+..+-...+.++.+.|
T Consensus 120 ~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIG 135 (201)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333334444444444
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.17 E-value=1.3e+02 Score=25.07 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=15.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhh
Q 048778 236 TSLVLGHCRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~ 259 (902)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445666666666666666666664
No 313
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.35 E-value=1.6e+02 Score=27.14 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=7.5
Q ss_pred HHHhccCCHHHHHHHHH
Q 048778 240 LGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 240 ~~~~~~g~~~~A~~~~~ 256 (902)
...++.|+++....+++
T Consensus 11 ~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 11 CNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33344444444444443
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.26 E-value=3.5e+02 Score=24.45 Aligned_cols=38 Identities=11% Similarity=-0.055 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
+-.+.+.|+-++-+|++.|-.|....-+.++-+...-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34677778888888887776776666666665555555
No 315
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.15 E-value=5.8e+02 Score=26.66 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
+.++.+.|+.++.+|++.|..|....-..+..+...-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45789999999999999888877666666666665555
No 316
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.32 E-value=5e+02 Score=25.60 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc-------cccccCCCCCCCCCcCCc-ch-
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS-------ISTSCHSDAGSSRLEHDD-DD- 729 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~- 729 (902)
+.--+...|.++.|++++++-+ |+..=...-..++..|....-.-.+.. ...+...+....+..|.. ..
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~--Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 99 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQV--GVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKL 99 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHS--CBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCH
T ss_pred cHHHHHHccCHHHHHHHHHHHh--CccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCH
Confidence 4555778899999999988876 332222233334455544431111110 111222221222211211 11
Q ss_pred --h---hhhhhhhhhhccHHHHHHHHHHHHhcCC----CCH------HHHHHHHHHHH-----hc-----C-----CHHH
Q 048778 730 --Y---ERSSKNFLREMDVEHAFRLRDRIESCGG----STT------DFYNFLVVELC-----RA-----G-----RIVE 779 (902)
Q Consensus 730 --~---~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~------~~~~~l~~~~~-----~~-----g-----~~~~ 779 (902)
. -..+..+...|++++|...|+.++..-+ .+. .-+..+.+-|. +. + +...
T Consensus 100 ~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR 179 (320)
T 3mkr_B 100 NDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKR 179 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHH
Confidence 1 1334556778999999999988775431 111 00111111111 11 1 1123
Q ss_pred HHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 780 ADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
..++.--+....+.|.... ..-+....+.+++..|..+.+++++.
T Consensus 180 ~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 227 (320)
T 3mkr_B 180 ICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLEL 227 (320)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445555544 33344455667777777777777764
No 317
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.29 E-value=1.3e+02 Score=27.01 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=7.8
Q ss_pred HHhcCChhHHHHHHH
Q 048778 278 LCEVGRLDEAFSLKD 292 (902)
Q Consensus 278 ~~~~g~~~~A~~~~~ 292 (902)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566655555443
No 318
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.89 E-value=1.3e+02 Score=26.91 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=12.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcC
Q 048778 276 HGLCEVGRLDEAFSLKDEMCEKGWQPS 302 (902)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 302 (902)
...+..|..+.-.++.+.+.+.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444444444445555555555444
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.72 E-value=1.7e+02 Score=26.84 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=8.6
Q ss_pred HHHHHhcCChHHHHHHHH
Q 048778 204 INALCKSGLVRAGEMFFC 221 (902)
Q Consensus 204 l~~~~~~~~~~~a~~~~~ 221 (902)
+...++.|+++....++.
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 333445555555554443
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.82 E-value=3.5e+02 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=9.8
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 048778 274 LIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 274 li~~~~~~g~~~~A~~~~~~m 294 (902)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 321
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.99 E-value=2.7e+02 Score=24.77 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=12.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 048778 345 IDRLCREGKIDEANGMCGKMLQDGHFP 371 (902)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~m~~~g~~~ 371 (902)
+...+..|..+.-.++.+.+++.|..+
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCC
Confidence 333444444444444555555555443
No 322
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.72 E-value=4e+02 Score=23.60 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=63.5
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 230 LDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
++..+-...+..+.+.|..+ +...+..+..+ ++...-...+.++.+.+..+ +...+..+.. .++...-...
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 127 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDER-AVEPLIKALKD----EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAA 127 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC----CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 34444445555555555433 23333333332 56666666666777766543 3333434433 3455555666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ 366 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 366 (902)
+.++.+.+..+ +...+..+.. .++..+-...+.++.+.|.. ++...+..+.+
T Consensus 128 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~ 179 (201)
T 3ltj_A 128 AFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 66666666533 3334444433 24556666666666666653 34444544444
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.36 E-value=1.1e+02 Score=26.37 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCC
Q 048778 235 CTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGR--LDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 300 (902)
.+.++.-|...|+.++|.+.++++... . -........+..++-+.+. .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-H-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-G-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-c-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 345667777777777777777777530 0 1122333444444444321 33455566666555443
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.73 E-value=32 Score=33.02 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=12.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcC
Q 048778 208 CKSGLVRAGEMFFCRVLKHGFCLD 231 (902)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~ 231 (902)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 455566655555555555544443
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.34 E-value=2.5e+02 Score=24.49 Aligned_cols=56 Identities=4% Similarity=-0.057 Sum_probs=0.0
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC-CC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG-GS--TTDFYNFLVV------ELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 789 (902)
...++..|++-+|.++++.+.... .+ ....|..|+. ...+.|+..-|..++.++..
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.29 E-value=2.5e+02 Score=28.13 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 048778 272 TTLIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 272 ~~li~~~~~~g~~~~A~~~~~~m 294 (902)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34445555555555555555544
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.07 E-value=5.8e+02 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048778 176 DLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCR 222 (902)
Q Consensus 176 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 222 (902)
.+.+-|+++-. +.|.+--...|..-.+.+...|++++|..+-..
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45555544433 334444444555555666666666666555443
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.86 E-value=3e+02 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 235 CTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
...++.-|...|++++|.+.++++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 57788999999999999999998864
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.40 E-value=5.5e+02 Score=24.28 Aligned_cols=16 Identities=0% Similarity=-0.240 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHHHcC
Q 048778 372 GVVTYNVLINGYCKQG 387 (902)
Q Consensus 372 ~~~~~~~li~~~~~~g 387 (902)
+..+-...+.++...|
T Consensus 141 ~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 141 STNVRRATAFAISVIN 156 (280)
T ss_dssp CHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3333333334444333
Done!