Query 048779
Match_columns 911
No_of_seqs 349 out of 3646
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-37 4E-42 383.2 29.8 511 2-730 73-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.5E-36 7.5E-41 371.9 28.8 505 1-725 96-607 (968)
3 KOG0472 Leucine-rich repeat pr 99.9 1.3E-29 2.7E-34 250.5 -11.3 412 3-556 50-468 (565)
4 KOG0472 Leucine-rich repeat pr 99.9 1.7E-29 3.7E-34 249.6 -11.6 100 20-121 43-142 (565)
5 KOG0618 Serine/threonine phosp 99.9 1.5E-28 3.3E-33 267.9 -7.4 284 440-794 219-508 (1081)
6 KOG4194 Membrane glycoprotein 99.9 6.5E-25 1.4E-29 227.2 3.1 336 2-396 82-436 (873)
7 PLN03210 Resistant to P. syrin 99.9 2.1E-22 4.4E-27 248.5 24.1 322 489-862 580-911 (1153)
8 KOG4194 Membrane glycoprotein 99.9 2.1E-24 4.6E-29 223.4 3.4 363 471-875 76-447 (873)
9 KOG0618 Serine/threonine phosp 99.9 2.2E-25 4.9E-30 243.4 -4.6 456 2-616 25-488 (1081)
10 PLN03210 Resistant to P. syrin 99.9 6.9E-22 1.5E-26 243.9 24.9 308 440-797 589-904 (1153)
11 KOG0444 Cytoskeletal regulator 99.9 4.3E-24 9.4E-29 222.4 -6.0 112 2-114 11-124 (1255)
12 KOG0444 Cytoskeletal regulator 99.8 9.3E-23 2E-27 212.5 -4.5 309 2-368 59-375 (1255)
13 KOG4237 Extracellular matrix p 99.6 8.1E-17 1.7E-21 160.3 -3.4 110 13-125 60-173 (498)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-14 5.4E-19 163.4 15.6 250 2-366 205-456 (788)
15 KOG4237 Extracellular matrix p 99.6 2E-16 4.3E-21 157.6 -1.9 385 2-420 71-496 (498)
16 KOG0617 Ras suppressor protein 99.6 6.2E-17 1.3E-21 142.1 -5.5 83 20-103 31-113 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 2.2E-13 4.9E-18 155.7 16.3 115 713-858 343-458 (788)
18 KOG0617 Ras suppressor protein 99.5 2.8E-15 6.1E-20 131.8 -3.3 117 3-121 38-155 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 7E-13 1.5E-17 152.9 13.3 107 2-121 182-288 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 8.8E-13 1.9E-17 154.5 7.3 234 21-270 544-787 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 4.2E-12 9.1E-17 146.5 10.8 197 1-264 202-399 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.3 4.4E-12 9.6E-17 148.7 6.5 255 18-302 519-789 (889)
23 cd00116 LRR_RI Leucine-rich re 99.2 2.5E-12 5.4E-17 138.4 0.4 103 1-103 1-119 (319)
24 KOG4341 F-box protein containi 99.1 1.7E-12 3.7E-17 131.1 -4.1 152 230-388 138-306 (483)
25 KOG4341 F-box protein containi 99.1 2.6E-12 5.6E-17 129.9 -5.1 104 642-745 244-355 (483)
26 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.2E-15 105.9 5.9 122 1-127 22-151 (175)
27 cd00116 LRR_RI Leucine-rich re 99.0 5.9E-11 1.3E-15 127.7 0.9 106 640-745 51-174 (319)
28 KOG0532 Leucine-rich repeat (L 98.9 2.6E-11 5.7E-16 127.2 -6.2 115 3-121 80-194 (722)
29 COG4886 Leucine-rich repeat (L 98.8 6.6E-09 1.4E-13 115.0 6.3 117 3-122 98-215 (394)
30 KOG0532 Leucine-rich repeat (L 98.7 1.9E-09 4.1E-14 113.6 -0.1 125 1-130 124-248 (722)
31 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 3.1E-13 95.0 5.4 113 5-123 4-120 (175)
32 KOG1259 Nischarin, modulator o 98.7 4E-09 8.6E-14 102.0 1.3 119 2-125 288-408 (490)
33 PLN03150 hypothetical protein; 98.7 3.5E-08 7.7E-13 114.1 9.1 102 2-103 422-526 (623)
34 COG4886 Leucine-rich repeat (L 98.7 1.7E-08 3.7E-13 111.7 5.6 117 2-121 120-237 (394)
35 PRK15386 type III secretion pr 98.6 2.9E-07 6.4E-12 96.8 10.8 93 660-767 48-141 (426)
36 PF13855 LRR_8: Leucine rich r 98.5 9.2E-08 2E-12 73.3 3.4 56 23-78 2-59 (61)
37 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.3E-13 95.4 0.1 105 1-110 310-416 (490)
38 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.5E-12 71.3 3.6 57 1-57 4-61 (61)
39 KOG3207 Beta-tubulin folding c 98.4 5E-08 1.1E-12 99.9 -0.4 85 19-103 118-208 (505)
40 PLN03150 hypothetical protein; 98.4 5.1E-07 1.1E-11 104.6 7.1 92 23-114 419-512 (623)
41 PRK15386 type III secretion pr 98.4 1.8E-06 3.8E-11 91.1 10.2 92 666-771 74-169 (426)
42 KOG0531 Protein phosphatase 1, 98.3 2.5E-07 5.5E-12 102.3 2.0 115 3-122 77-192 (414)
43 KOG3207 Beta-tubulin folding c 98.3 2.8E-07 6.1E-12 94.6 1.4 106 17-122 141-252 (505)
44 KOG2120 SCF ubiquitin ligase, 98.2 3.6E-08 7.7E-13 95.7 -5.8 158 46-265 186-350 (419)
45 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-07 2.5E-12 92.3 -2.5 178 357-556 187-373 (419)
46 KOG1909 Ran GTPase-activating 98.2 2E-07 4.4E-12 93.0 -1.8 87 17-103 25-131 (382)
47 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.3E-11 59.5 3.5 38 23-60 2-39 (44)
48 KOG4579 Leucine-rich repeat (L 98.0 5.9E-07 1.3E-11 77.1 -1.4 107 2-111 31-141 (177)
49 KOG1909 Ran GTPase-activating 98.0 4.3E-07 9.3E-12 90.7 -2.7 232 2-294 34-309 (382)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.8E-10 55.8 3.6 40 45-85 1-40 (44)
51 KOG0531 Protein phosphatase 1, 97.7 6.6E-06 1.4E-10 91.1 0.2 98 2-103 99-197 (414)
52 KOG1859 Leucine-rich repeat pr 97.7 3.6E-06 7.8E-11 91.9 -3.3 95 4-103 170-265 (1096)
53 KOG1644 U2-associated snRNP A' 97.6 5.6E-05 1.2E-09 70.0 4.5 120 3-127 24-151 (233)
54 KOG1859 Leucine-rich repeat pr 97.6 5E-06 1.1E-10 90.8 -3.3 103 1-109 190-295 (1096)
55 KOG2982 Uncharacterized conser 97.6 1.7E-05 3.8E-10 77.5 0.5 36 43-78 69-107 (418)
56 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 67.8 5.6 73 3-77 47-122 (233)
57 KOG4579 Leucine-rich repeat (L 97.5 1.2E-05 2.6E-10 69.2 -1.4 83 3-87 58-141 (177)
58 KOG1947 Leucine rich repeat pr 97.5 1.3E-05 2.9E-10 91.8 -2.7 117 436-559 184-308 (482)
59 KOG1947 Leucine rich repeat pr 97.4 7.7E-06 1.7E-10 93.7 -5.8 86 473-558 188-281 (482)
60 KOG2982 Uncharacterized conser 97.4 3.7E-05 8.1E-10 75.2 -0.3 78 43-121 43-126 (418)
61 COG5238 RNA1 Ran GTPase-activa 97.0 0.00031 6.6E-09 68.1 2.1 89 19-108 27-135 (388)
62 KOG3665 ZYG-1-like serine/thre 97.0 0.00041 8.9E-09 80.3 3.5 76 44-122 121-201 (699)
63 KOG3665 ZYG-1-like serine/thre 97.0 0.00037 8.1E-09 80.6 2.9 83 19-103 145-231 (699)
64 COG5238 RNA1 Ran GTPase-activa 96.9 0.00011 2.4E-09 71.0 -2.0 88 41-128 26-132 (388)
65 KOG2123 Uncharacterized conser 96.8 8.2E-05 1.8E-09 72.2 -3.8 104 19-125 16-126 (388)
66 KOG2739 Leucine-rich acidic nu 96.1 0.0042 9.1E-08 60.7 3.0 105 19-126 40-153 (260)
67 PF00560 LRR_1: Leucine Rich R 95.9 0.0024 5.1E-08 36.8 0.4 18 47-64 2-19 (22)
68 KOG2739 Leucine-rich acidic nu 95.9 0.0065 1.4E-07 59.4 3.4 97 15-112 58-162 (260)
69 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.3E-07 34.1 0.9 21 23-43 1-21 (22)
70 PF13504 LRR_7: Leucine rich r 94.7 0.018 4E-07 30.6 1.3 16 46-61 2-17 (17)
71 PF13306 LRR_5: Leucine rich r 94.5 0.17 3.6E-06 45.5 8.0 36 683-720 30-66 (129)
72 KOG2123 Uncharacterized conser 94.3 0.0047 1E-07 60.4 -2.6 94 3-99 24-124 (388)
73 KOG0473 Leucine-rich repeat pr 93.7 0.0016 3.4E-08 61.8 -7.0 89 15-104 35-123 (326)
74 PF13306 LRR_5: Leucine rich r 92.5 0.31 6.8E-06 43.7 6.3 100 15-121 5-108 (129)
75 PF13504 LRR_7: Leucine rich r 92.2 0.1 2.2E-06 27.8 1.5 17 22-38 1-17 (17)
76 KOG0473 Leucine-rich repeat pr 92.2 0.004 8.6E-08 59.2 -6.7 88 34-123 30-118 (326)
77 KOG3864 Uncharacterized conser 91.6 0.023 5E-07 53.3 -2.3 64 231-298 102-166 (221)
78 KOG3864 Uncharacterized conser 90.7 0.036 7.9E-07 52.0 -1.9 81 665-745 102-185 (221)
79 smart00370 LRR Leucine-rich re 90.6 0.24 5.2E-06 29.8 2.2 20 44-63 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 90.6 0.24 5.2E-06 29.8 2.2 20 44-63 1-20 (26)
81 smart00369 LRR_TYP Leucine-ric 83.5 1 2.2E-05 27.0 2.0 20 21-40 1-20 (26)
82 smart00370 LRR Leucine-rich re 83.5 1 2.2E-05 27.0 2.0 20 21-40 1-20 (26)
83 smart00367 LRR_CC Leucine-rich 77.2 1.7 3.6E-05 26.1 1.5 15 844-858 2-16 (26)
84 smart00364 LRR_BAC Leucine-ric 76.3 1.8 3.8E-05 25.9 1.3 17 46-62 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 74.7 2.5 5.3E-05 25.4 1.7 17 44-60 1-17 (26)
86 PF13516 LRR_6: Leucine Rich r 60.7 4.1 8.9E-05 23.8 0.7 11 46-56 3-13 (24)
87 KOG3763 mRNA export factor TAP 51.8 5.4 0.00012 44.0 0.4 86 42-127 215-312 (585)
88 smart00368 LRR_RI Leucine rich 51.7 12 0.00026 22.9 1.8 14 45-58 2-15 (28)
89 KOG4308 LRR-containing protein 32.9 2.2 4.8E-05 47.7 -6.3 114 15-128 165-302 (478)
90 PF05725 FNIP: FNIP Repeat; I 26.7 80 0.0017 21.8 2.9 32 844-876 12-43 (44)
91 KOG3763 mRNA export factor TAP 20.9 63 0.0014 36.1 2.1 79 19-98 215-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-37 Score=383.20 Aligned_cols=511 Identities=19% Similarity=0.193 Sum_probs=283.6
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCc-cccccc-cCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRIS-ELPDSV-GDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~~ 78 (911)
.|||++|.+++.++++|..+++|++|+|++|.++ .+|..+ ..+++||+|++++|+++ .+|. ..+++|++|++++|
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n 150 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN 150 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC
Confidence 4667777777766666777777777777777765 565544 36777777777777665 3342 45667777777776
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
.....+|..++++++|++|++++|.+.+.+|..++++++|+.|+
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~------------------------------------ 194 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT------------------------------------ 194 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee------------------------------------
Confidence 55556666677777777777777764455665565555555553
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCC-CCCCCcCCCCCCcccEEEE
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGT-KFPTWLGDSSFSNLVTLKF 237 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l~~~~~~~L~~L~L 237 (911)
+++|.. ....+..+..+++|+.|++.+|... .+|..+.. +++|+.|++
T Consensus 195 ------------------L~~n~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L 243 (968)
T PLN00113 195 ------------------LASNQL-----------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDL 243 (968)
T ss_pred ------------------ccCCCC-----------cCcCChHHcCcCCccEEECcCCccCCcCChhHhc--CCCCCEEEC
Confidence 211111 0001122233344444444444433 23444433 555666666
Q ss_pred eCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccce
Q 048779 238 EDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRE 316 (911)
Q Consensus 238 ~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 316 (911)
++|...+.+| .++.+++|++|++++|.....++.. ...+++|++
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----------------------------------l~~l~~L~~ 288 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-----------------------------------IFSLQKLIS 288 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchh-----------------------------------HhhccCcCE
Confidence 5555544444 4555555555555555321111111 234555666
Q ss_pred eecccCCCcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCcccccccc
Q 048779 317 LHILRCSKLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSL 396 (911)
Q Consensus 317 L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 396 (911)
|++++| .+.+.+|.. +..+++|+.|++++|..... ....+
T Consensus 289 L~Ls~n-~l~~~~p~~------------------~~~l~~L~~L~l~~n~~~~~---------------------~~~~~ 328 (968)
T PLN00113 289 LDLSDN-SLSGEIPEL------------------VIQLQNLEILHLFSNNFTGK---------------------IPVAL 328 (968)
T ss_pred EECcCC-eeccCCChh------------------HcCCCCCcEEECCCCccCCc---------------------CChhH
Confidence 666555 344344431 22233334444433332110 00000
Q ss_pred hhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcc
Q 048779 397 PALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLE 476 (911)
Q Consensus 397 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~ 476 (911)
..+++|+.|++.++..... .+..++.+++|+.|++++|.....++. .+..+ ++|+
T Consensus 329 ------------~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p~-----~~~~~----~~L~ 383 (968)
T PLN00113 329 ------------TSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLSTNNLTGEIPE-----GLCSS----GNLF 383 (968)
T ss_pred ------------hcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCCCeeEeeCCh-----hHhCc----CCCC
Confidence 0133333444433332211 123456667777777777633222211 11111 5677
Q ss_pred eEEEEeccccccccccccCCCCccEEEecCCCCccccCC-CCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEec
Q 048779 477 YLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIES 555 (911)
Q Consensus 477 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 555 (911)
.|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|.....++... ..+++|+.|++++
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~ 461 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLAR 461 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcC
Confidence 777777766666666666777777777777533323332 2335666666666666333333322 3456666666666
Q ss_pred CCCCccccCCCCCCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhhhc
Q 048779 556 CHSLRYIAGVQLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEV 635 (911)
Q Consensus 556 c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~ 635 (911)
|.....+|.....+ +|+.|++++|. +.... |..+.
T Consensus 462 n~~~~~~p~~~~~~-----------------------------------~L~~L~ls~n~-l~~~~-----~~~~~---- 496 (968)
T PLN00113 462 NKFFGGLPDSFGSK-----------------------------------RLENLDLSRNQ-FSGAV-----PRKLG---- 496 (968)
T ss_pred ceeeeecCcccccc-----------------------------------cceEEECcCCc-cCCcc-----Chhhh----
Confidence 54333333221122 45555555432 11111 11122
Q ss_pred cCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCcc
Q 048779 636 GNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLT 715 (911)
Q Consensus 636 ~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 715 (911)
.+ ++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 497 -~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 497 -SL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred -hh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 22 6788888888877778888888888888888888888888888888888888888888877777888777788888
Q ss_pred EEeeccccCcccccc
Q 048779 716 RLEIYDCKRLEALPK 730 (911)
Q Consensus 716 ~L~l~~c~~l~~~~~ 730 (911)
.+++++|+....+|.
T Consensus 575 ~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 575 QVNISHNHLHGSLPS 589 (968)
T ss_pred EEeccCCcceeeCCC
Confidence 888888776666665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-36 Score=371.89 Aligned_cols=505 Identities=18% Similarity=0.170 Sum_probs=351.3
Q ss_pred CeeeccCCcccccccccc-cCCCCCCEEEccCCCCc-cccccccCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKL-FKLQSLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~ 77 (911)
++|||++|++.+.+|.++ ..+++|++|+|++|.++ .+|. +.+++|++|++++|.++ .+|..++++++|++|++++
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 579999999999999887 59999999999999987 4453 57899999999999988 7788999999999999999
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCC
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKD 157 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~ 157 (911)
|.....+|..++++++|++|++++|.+.+.+|..++++++|+.|+......
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----------------------------- 224 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL----------------------------- 224 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc-----------------------------
Confidence 877778999999999999999999997777888888888888774221110
Q ss_pred hhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCC-CCCCCcCCCCCCcccEEE
Q 048779 158 VGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGT-KFPTWLGDSSFSNLVTLK 236 (911)
Q Consensus 158 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l~~~~~~~L~~L~ 236 (911)
....+..+..+++|+.|++.+|... .+|..+.. +++|+.|+
T Consensus 225 ------------------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~ 266 (968)
T PLN00113 225 ------------------------------------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN--LKNLQYLF 266 (968)
T ss_pred ------------------------------------CCcCChhHhcCCCCCEEECcCceeccccChhHhC--CCCCCEEE
Confidence 0011223344566666777666554 45666655 89999999
Q ss_pred EeCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccc
Q 048779 237 FEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLR 315 (911)
Q Consensus 237 L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 315 (911)
+++|...+.+| .+..+++|++|++++|.....++.. +.. +++|+.|++.++........ ....+++|+
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~-----l~~L~~L~l~~n~~~~~~~~-----~~~~l~~L~ 335 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQ-----LQNLEILHLFSNNFTGKIPV-----ALTSLPRLQ 335 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcC-----CCCCcEEECCCCccCCcCCh-----hHhcCCCCC
Confidence 99999877777 6888999999999988633232221 111 45555555554321111100 123455555
Q ss_pred eeecccCCCcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCccccccc
Q 048779 316 ELHILRCSKLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTS 395 (911)
Q Consensus 316 ~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 395 (911)
+|++++| .+.+.+|. .+..+++|+.|++++|...
T Consensus 336 ~L~L~~n-~l~~~~p~------------------~l~~~~~L~~L~Ls~n~l~--------------------------- 369 (968)
T PLN00113 336 VLQLWSN-KFSGEIPK------------------NLGKHNNLTVLDLSTNNLT--------------------------- 369 (968)
T ss_pred EEECcCC-CCcCcCCh------------------HHhCCCCCcEEECCCCeeE---------------------------
Confidence 5555554 33323332 1223344444444444321
Q ss_pred chhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCc
Q 048779 396 LPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRL 475 (911)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L 475 (911)
.. .+..+..+++|+.|++.+|.....++. .+..+ ++|
T Consensus 370 ------------------------------~~----~p~~~~~~~~L~~L~l~~n~l~~~~p~-----~~~~~----~~L 406 (968)
T PLN00113 370 ------------------------------GE----IPEGLCSSGNLFKLILFSNSLEGEIPK-----SLGAC----RSL 406 (968)
T ss_pred ------------------------------ee----CChhHhCcCCCCEEECcCCEecccCCH-----HHhCC----CCC
Confidence 11 123456678899999999854333322 22333 899
Q ss_pred ceEEEEeccccccccccccCCCCccEEEecCCCCccccCC-CCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEe
Q 048779 476 EYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIE 554 (911)
Q Consensus 476 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 554 (911)
+.|++++|.....+|..+..+++|+.|+++++.....++. ...+++|++|++++|.....++..+ ..++|+.|+++
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls 483 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLS 483 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECc
Confidence 9999999998888899999999999999999543333333 2347899999999999666666543 46889999999
Q ss_pred cCCCCccccCC-CCCCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhh
Q 048779 555 SCHSLRYIAGV-QLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESL 633 (911)
Q Consensus 555 ~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l 633 (911)
+|.....++.. ...++|+.|++++|.-... . |..+.
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------------------~-----p~~~~-- 520 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGE------------------------------------I-----PDELS-- 520 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceee------------------------------------C-----ChHHc--
Confidence 97543333321 2233455555554431111 1 11222
Q ss_pred hccCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCC
Q 048779 634 EVGNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAK 713 (911)
Q Consensus 634 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 713 (911)
.+ ++|++|++++|.....+|..+..+++|+.|++++|.....+|..+.++++|+.|++++|+....+|... .+..
T Consensus 521 ---~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~-~~~~ 595 (968)
T PLN00113 521 ---SC-KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG-AFLA 595 (968)
T ss_pred ---Cc-cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc-hhcc
Confidence 22 789999999999888999999999999999999999999999999999999999999998878888642 2223
Q ss_pred ccEEeeccccCc
Q 048779 714 LTRLEIYDCKRL 725 (911)
Q Consensus 714 L~~L~l~~c~~l 725 (911)
+....+.+++.+
T Consensus 596 ~~~~~~~~n~~l 607 (968)
T PLN00113 596 INASAVAGNIDL 607 (968)
T ss_pred cChhhhcCCccc
Confidence 344444454433
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-29 Score=250.52 Aligned_cols=412 Identities=22% Similarity=0.259 Sum_probs=221.8
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLK 82 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 82 (911)
|++++|.+. .+.+++.++..+.+|++++|.++++|.+++++..++.|+.++|++.++|+.+..+.+|+.|+.++ +...
T Consensus 50 lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~ 127 (565)
T KOG0472|consen 50 LILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELK 127 (565)
T ss_pred hhhccCchh-hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-ccee
Confidence 344455444 33444455555555555555555555555555555555555555555555555555555555555 3344
Q ss_pred cchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhh
Q 048779 83 KLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAK 162 (911)
Q Consensus 83 ~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~ 162 (911)
++|+.|+.+..|+.|+..+|+ +.++|.++..+.+|..+.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~---------------------------------------- 166 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLD---------------------------------------- 166 (565)
T ss_pred ecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhh----------------------------------------
Confidence 455555555555555555555 444555444444444332
Q ss_pred hhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCC
Q 048779 163 EAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGM 242 (911)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~ 242 (911)
+.++... ..++....++.|+.++...|....+|..++. +.+|..|++..|+.
T Consensus 167 --------------~~~n~l~------------~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 167 --------------LEGNKLK------------ALPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI 218 (565)
T ss_pred --------------ccccchh------------hCCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc
Confidence 2211110 0111222256677777777777778887765 88888888888887
Q ss_pred CCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccC
Q 048779 243 CTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRC 322 (911)
Q Consensus 243 ~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 322 (911)
..+|.|+++..|+++++..|. ++.++++.... ++++..|++++.. +++... ++.-+.+|++||++++
T Consensus 219 -~~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~-----L~~l~vLDLRdNk-lke~Pd-----e~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 219 -RFLPEFPGCSLLKELHVGENQ-IEMLPAEHLKH-----LNSLLVLDLRDNK-LKEVPD-----EICLLRSLERLDLSNN 285 (565)
T ss_pred -ccCCCCCccHHHHHHHhcccH-HHhhHHHHhcc-----cccceeeeccccc-cccCch-----HHHHhhhhhhhcccCC
Confidence 678888899999999988774 77776665443 6666666666632 332222 2455666777777765
Q ss_pred CCcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhh--hccccc---ccccccc-cccCCcccccccc
Q 048779 323 SKLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSV--SLTSLP---ALCNLQI-GRCEELSVSVTSL 396 (911)
Q Consensus 323 ~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~---~L~~L~l-~~~~~~~~~~~~~ 396 (911)
.++ .+|. .++++ .|++|.+.|+..-+. .+...+ -|.+|+= .-|...+.....-
T Consensus 286 -~is-~Lp~------------------sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 286 -DIS-SLPY------------------SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred -ccc-cCCc------------------ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 555 4553 34444 566666666664432 110000 0111110 0011110000000
Q ss_pred hhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcc
Q 048779 397 PALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLE 476 (911)
Q Consensus 397 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~ 476 (911)
..... .+ -| .........+.+.|++++- .++.++.+.|++.-. .-..
T Consensus 345 e~~~t---------~~---------------~~--~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~------~~Vt 391 (565)
T KOG0472|consen 345 ETAMT---------LP---------------SE--SFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKS------EIVT 391 (565)
T ss_pred cccCC---------CC---------------CC--cccchhhhhhhhhhccccc-ccccCCHHHHHHhhh------cceE
Confidence 00000 00 00 1112334456677777765 677777777665543 2356
Q ss_pred eEEEEeccccccccccccCCCCccEEEecCCCCccccCC-CCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEec
Q 048779 477 YLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIES 555 (911)
Q Consensus 477 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 555 (911)
..+++.++. ..+|..+..+..+.+..+...+.+..++. ...+++|..|++++|. +.++|..+ ..+..|+.|+++.
T Consensus 392 ~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~--~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 392 SVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEM--GSLVRLQTLNLSF 467 (565)
T ss_pred EEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhh--hhhhhhheecccc
Confidence 677777643 66777666665555554444344433333 2347778888888777 77777766 4666677777777
Q ss_pred C
Q 048779 556 C 556 (911)
Q Consensus 556 c 556 (911)
+
T Consensus 468 N 468 (565)
T KOG0472|consen 468 N 468 (565)
T ss_pred c
Confidence 3
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.7e-29 Score=249.60 Aligned_cols=100 Identities=29% Similarity=0.467 Sum_probs=84.2
Q ss_pred CCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEc
Q 048779 20 KLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNN 99 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L 99 (911)
.-..++.+.+++|.+..+.+.+.++.-|.+|++.+|++.++|++++.+.+++.|+.++ +.+..+|+.++.+.+|+.|+.
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhc
Confidence 3356888888899988886668888889999999999889998899999999999998 568888888999999999999
Q ss_pred CCCcccccCcCCCCCccccccc
Q 048779 100 SNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 100 ~~~~~~~~~p~~~~~L~~L~~L 121 (911)
++|. ..++|.+++.+..|..+
T Consensus 122 s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 122 SSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred cccc-eeecCchHHHHhhhhhh
Confidence 9988 88888888777766655
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-28 Score=267.89 Aligned_cols=284 Identities=22% Similarity=0.255 Sum_probs=205.2
Q ss_pred CCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCC-
Q 048779 440 CSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVAL- 518 (911)
Q Consensus 440 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~- 518 (911)
++|+.|+..+|+..+... ...|.+|++++++++.. ..+|.|+..+.+|+.+...+ +.++.++...+
T Consensus 219 ~~l~~L~a~~n~l~~~~~-----------~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~ 285 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV-----------HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANH-NRLVALPLRISR 285 (1081)
T ss_pred cchheeeeccCcceeecc-----------ccccccceeeecchhhh-hcchHHHHhcccceEecccc-hhHHhhHHHHhh
Confidence 455666666664432211 12568999999998854 78889999999999999999 67777776444
Q ss_pred CCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCCCCC---CCCceeecccCCCcccccccccccccC
Q 048779 519 PSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGVQLP---PSLKTLFIDECGNIRTLTVEEGIHSSS 595 (911)
Q Consensus 519 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~L~~L~l~~c~~l~~l~~~~~~~~~~ 595 (911)
..+|+.|.+..|. ++.++... .++.+|++|++.. +++.++|...+. .+|+.++.+..+ +...
T Consensus 286 ~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~l---------- 350 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNK-LSTL---------- 350 (1081)
T ss_pred hhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcc-cccc----------
Confidence 6789999999988 88888765 6789999999998 677777753111 123333333221 1111
Q ss_pred CccccccccccceEeeecCCCccccccCCCCchhhhhhhccCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccc
Q 048779 596 SSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCE 675 (911)
Q Consensus 596 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~ 675 (911)
. ... +...+.|+.|.+.+|...+...+.+.++.+|++|++++|.
T Consensus 351 --------------p-----~~~-----------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 351 --------------P-----SYE-----------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred --------------c-----ccc-----------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 0 000 0112678889999988888777789999999999999875
Q ss_pred cccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccccCCCccCcEEeCC-ccCccccCC
Q 048779 676 KLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLKSLQELRIGG-ELPSLEEDD 754 (911)
Q Consensus 676 ~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~~l~~~~ 754 (911)
.-.-....+.++..|++|++++| .++.+|.....++.|++|...+ +.+..+| .+..+++|+.+|++. .+..+.-..
T Consensus 395 L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecccchhhhhhhhh
Confidence 44333346788999999999998 6999999899999999999988 7888998 788999999999999 666655555
Q ss_pred CCC-CCCCceEEecccchhhhhhhcCcccCCCCCccEEEec
Q 048779 755 GLP-TDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIE 794 (911)
Q Consensus 755 ~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~ 794 (911)
..+ ++|++||+++|..+..-- ..+..+..+...++.
T Consensus 472 ~~p~p~LkyLdlSGN~~l~~d~----~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNTRLVFDH----KTLKVLKSLSQMDIT 508 (1081)
T ss_pred hCCCcccceeeccCCcccccch----hhhHHhhhhhheecc
Confidence 666 899999999999754322 234445555444444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.5e-25 Score=227.18 Aligned_cols=336 Identities=17% Similarity=0.177 Sum_probs=179.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~ 80 (911)
.||+|+|.++..-+..|.++++|+.+.+..|.++.||...+...+|+.|+|.+|.|+++. +++.-++.||.||||. +.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-NL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-ch
Confidence 467777777766666667777777777777777777764455566777777777776664 3366677777777777 44
Q ss_pred cccch-hhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceec--cCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 81 LKKLC-ADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVV--GKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 81 ~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
+..+| ..+.+-.++++|+|++|. ++.+.. .|..+.+|..|..... .......
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~----------------------- 216 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRS----------------------- 216 (873)
T ss_pred hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHH-----------------------
Confidence 55565 335566667777777776 555544 2555555555532211 1111112
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLK 236 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~ 236 (911)
+.++++|+.|++..|.+ .......++.+++|+.|.+..|++..+.+..+. .+.++++|+
T Consensus 217 ---------Fk~L~~L~~LdLnrN~i-----------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~ 275 (873)
T KOG4194|consen 217 ---------FKRLPKLESLDLNRNRI-----------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLN 275 (873)
T ss_pred ---------hhhcchhhhhhccccce-----------eeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceee
Confidence 34445555555544433 111123344555556666655555544332222 356666666
Q ss_pred EeCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccc
Q 048779 237 FEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLR 315 (911)
Q Consensus 237 L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 315 (911)
|+.|.....-. ++-+++.|+.|++++|. +..+..+.+.. .++|+.|+|+... ++...... ...+.+|+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Wsf-----tqkL~~LdLs~N~-i~~l~~~s----f~~L~~Le 344 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSF-----TQKLKELDLSSNR-ITRLDEGS----FRVLSQLE 344 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhh-hheeecchhhh-----cccceeEeccccc-cccCChhH----HHHHHHhh
Confidence 66655432222 44556666666666663 44444333332 4556666655432 22222111 23455566
Q ss_pred eeecccCCCcccCCC----CCCCccceEEEeccCC------cccccCCCCccceEEEcCCcchhh---hccccccccccc
Q 048779 316 ELHILRCSKLRGTFP----KCLPALQMLVIYRCEE------FSVSVTSLPALCNLQINGCEELSV---SLTSLPALCNLQ 382 (911)
Q Consensus 316 ~L~l~~c~~l~~~~~----~~l~~L~~L~l~~~~~------l~~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~L~~L~ 382 (911)
+|.++.+ .+. .+. ..+.+|++|++..+.. -...+..+++|+.|.+.+|..-.+ +|..++.|+.|+
T Consensus 345 ~LnLs~N-si~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 345 ELNLSHN-SID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhccccc-chH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 6666655 333 222 2344555555544431 122444566777777776664333 555666666666
Q ss_pred ccccCCcccccccc
Q 048779 383 IGRCEELSVSVTSL 396 (911)
Q Consensus 383 l~~~~~~~~~~~~~ 396 (911)
+++|...++....+
T Consensus 423 L~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 423 LGDNAIASIQPNAF 436 (873)
T ss_pred CCCCcceeeccccc
Confidence 66666555544443
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.1e-22 Score=248.52 Aligned_cols=322 Identities=23% Similarity=0.311 Sum_probs=185.6
Q ss_pred ccccccCCC-CccEEEecCCCCccccCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCCCC
Q 048779 489 LPQSLLSLS-SLREIFIGGCNSLVSFPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGVQL 567 (911)
Q Consensus 489 ~~~~l~~l~-~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 567 (911)
+|..+..+| +|+.|.+.+ ..++.+|....+.+|++|++.++. ++.++.+. ..+++|+.|++++|..++.+|....
T Consensus 580 lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDK-YPLRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecC-CCCCCCCCcCCccCCcEEECcCcc-cccccccc--ccCCCCCEEECCCCCCcCcCCcccc
Confidence 344444432 455566555 344555544445556666666554 44554443 4556666666666555555555555
Q ss_pred CCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhhhccCCCCCCcEEEE
Q 048779 568 PPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLCV 647 (911)
Q Consensus 568 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~~~~~~~L~~L~l 647 (911)
.++|+.|++.+|..+..+ |..+.. +++|+.|++++|.+++. +|.+ .-+++|+.|++
T Consensus 656 l~~Le~L~L~~c~~L~~l--p~si~~---------L~~L~~L~L~~c~~L~~-Lp~~------------i~l~sL~~L~L 711 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVEL--PSSIQY---------LNKLEDLDMSRCENLEI-LPTG------------INLKSLYRLNL 711 (1153)
T ss_pred CCcccEEEecCCCCcccc--chhhhc---------cCCCCEEeCCCCCCcCc-cCCc------------CCCCCCCEEeC
Confidence 556666666666655554 433332 33666666666666555 2221 01255666666
Q ss_pred cCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCcccc------ccCC-CCCCCCCccEEeec
Q 048779 648 YGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLV------TFPE-GGLPCAKLTRLEIY 720 (911)
Q Consensus 648 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~------~~~~-~~~~~~~L~~L~l~ 720 (911)
++|..+..+|.. .++|++|+++++. +..+|..+ .+++|++|.+.++.... .++. .....++|+.|+++
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 666655555532 3456666666554 34444333 35666666665543111 0000 11223466667777
Q ss_pred cccCcccccccccCCCccCcEEeCC--ccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCCC
Q 048779 721 DCKRLEALPKGLHNLKSLQELRIGG--ELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCDD 798 (911)
Q Consensus 721 ~c~~l~~~~~~l~~l~~L~~L~l~~--~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 798 (911)
+|+.+..+|..++++++|++|++++ .+..+|... .+++|++|++++|..+...+ ...++|+.|+++++
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n-- 856 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT-- 856 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------ccccccCEeECCCC--
Confidence 6666666666666666777777665 555555533 45677777777777665443 22357777777763
Q ss_pred CCCCCCchhhhccccCcCCCCCCcceeeecCCCCccccccccCCCCCcceEecccCCCccccCC
Q 048779 799 DMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSSSIVDLQNLTELRLHDCPKLKYFPE 862 (911)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~ 862 (911)
.++.+|... ..+++|+.|++.+|++++.+|..+..+++|+.+++++|.+++.++.
T Consensus 857 ~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 857 GIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred CCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 455666543 3577888888888888888887777788888888888888876654
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.1e-24 Score=223.40 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=209.7
Q ss_pred cccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCC-CCCCcEEEeccCCCCCccchhhhcCCCCCcc
Q 048779 471 FSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVAL-PSKLKKIEISECDALKSLPEAWMCDTNSSLE 549 (911)
Q Consensus 471 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 549 (911)
+|+.-+.|++++|..-..-+..+.++++|+++++.. +.++.+|.++. ..+++.|++.+|. +..+..... +-++.|+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALR 152 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhh
Confidence 567788899998877666677888999999999999 89999998766 5569999999988 666655443 6789999
Q ss_pred EEEEecCCCCccccCCCCC--CCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCc
Q 048779 550 ILYIESCHSLRYIAGVQLP--PSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELP 627 (911)
Q Consensus 550 ~L~l~~c~~l~~~~~~~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 627 (911)
.||++. +.+..++...+| +++++|++.++. ++.+ ..+.+ .++.+|..|.++.. .++. .|.
T Consensus 153 slDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l--~~~~F--------~~lnsL~tlkLsrN-ritt-Lp~---- 214 (873)
T KOG4194|consen 153 SLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTL--ETGHF--------DSLNSLLTLKLSRN-RITT-LPQ---- 214 (873)
T ss_pred hhhhhh-chhhcccCCCCCCCCCceEEeecccc-cccc--ccccc--------cccchheeeecccC-cccc-cCH----
Confidence 999998 788888877666 579999998774 4444 22211 12335555555541 2221 000
Q ss_pred hhhhhhhccCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCC
Q 048779 628 ATLESLEVGNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEG 707 (911)
Q Consensus 628 ~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 707 (911)
. .+..+ +.|+.|++..+..-..-..+|.++++|+.|.+..|..-+.-.+.|..+.++++|+|..| ++..+.++
T Consensus 215 r-----~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g 287 (873)
T KOG4194|consen 215 R-----SFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEG 287 (873)
T ss_pred H-----Hhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcc
Confidence 0 01122 55666666555432222344556666666666655554444445555666666666555 34444333
Q ss_pred -CCCCCCccEEeeccccCcccc-cccccCCCccCcEEeCC-ccCcccc-CCCCCCCCCceEEecccchhhhhhhcCcccC
Q 048779 708 -GLPCAKLTRLEIYDCKRLEAL-PKGLHNLKSLQELRIGG-ELPSLEE-DDGLPTDLRSLEIIFNTKIWKSMIERGQGFH 783 (911)
Q Consensus 708 -~~~~~~L~~L~l~~c~~l~~~-~~~l~~l~~L~~L~l~~-~~~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 783 (911)
++.+++|+.|++++ +.+..+ +....-+++|++|+++. .+..+++ .......|++|.+++|..-...- .+|.
T Consensus 288 ~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~ 362 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFV 362 (873)
T ss_pred cccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHH
Confidence 44566666666666 344444 22455556666666665 5555543 23344555666666555432211 4455
Q ss_pred CCCCccEEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCcccccc-ccCCCCCcceEecccCCCccccCC
Q 048779 784 RFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHDCPKLKYFPE 862 (911)
Q Consensus 784 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~ 862 (911)
.+.+|++|+++++. .-..+.+. ..+..-+++|+.|++.+ ++++++|. .+..+++|+.|++.+ +-+.+|..
T Consensus 363 ~lssL~~LdLr~N~-ls~~IEDa------a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~ 433 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNE-LSWCIEDA------AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQP 433 (873)
T ss_pred HhhhhhhhcCcCCe-EEEEEecc------hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecc
Confidence 66666666665531 11111110 11123356666666666 55666665 555666666666665 55555544
Q ss_pred CCC-cccccceeec
Q 048779 863 KGL-PSSLLQLQIW 875 (911)
Q Consensus 863 ~~~-~~sL~~L~i~ 875 (911)
..+ +..|++|-+.
T Consensus 434 nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 434 NAFEPMELKELVMN 447 (873)
T ss_pred cccccchhhhhhhc
Confidence 333 3355555443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-25 Score=243.39 Aligned_cols=456 Identities=24% Similarity=0.258 Sum_probs=255.0
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.|++++|-+-....+.+.+.-+|++|++++|.++..|..+..+.+|+.|.+++|.|..+|.++.++.+|++|+|.+ +.+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l 103 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRL 103 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chh
Confidence 4677777665433333355666999999999999999989999999999999999999998899999999999998 678
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhh
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNA 161 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~ 161 (911)
..+|+++..+++|++|++++|. ...+|.-+..++.+..+........ ..+++.. ..++. +.... ..+.
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~--~~lg~~~-ik~~~--l~~n~------l~~~ 171 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKI--QRLGQTS-IKKLD--LRLNV------LGGS 171 (1081)
T ss_pred hcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhh--hhhcccc-chhhh--hhhhh------cccc
Confidence 8999999999999999999999 8888888888877776643322100 0000000 01110 00000 0001
Q ss_pred hhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCC
Q 048779 162 KEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCG 241 (911)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~ 241 (911)
+..++..++. .+++.+|.++ ...+..+.+|+.+....+....+.. .-++|+.|+.+.|.
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~--------------~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME--------------VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNP 230 (1081)
T ss_pred hhcchhhhhe--eeecccchhh--------------hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCc
Confidence 1111111111 2333333220 1122233333333333333222111 12344444444444
Q ss_pred CCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeeccc
Q 048779 242 MCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILR 321 (911)
Q Consensus 242 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 321 (911)
.....+ -..-.+|++++++.+. ...++ +| ++.+++|+.+++.+
T Consensus 231 l~~~~~-~p~p~nl~~~dis~n~-l~~lp---------------------------~w--------i~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 231 LTTLDV-HPVPLNLQYLDISHNN-LSNLP---------------------------EW--------IGACANLEALNANH 273 (1081)
T ss_pred ceeecc-ccccccceeeecchhh-hhcch---------------------------HH--------HHhcccceEecccc
Confidence 331111 1111234444444332 22222 22 34455666666555
Q ss_pred CCCcccCCCC---CCCccceEEEeccC--CcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCcccccccc
Q 048779 322 CSKLRGTFPK---CLPALQMLVIYRCE--EFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSL 396 (911)
Q Consensus 322 c~~l~~~~~~---~l~~L~~L~l~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 396 (911)
+ .+. .+|. ...+|+.|.+..|+ .+......+.+|+.|++..+.... +|.
T Consensus 274 N-~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-----lp~------------------- 327 (1081)
T KOG0618|consen 274 N-RLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-----LPD------------------- 327 (1081)
T ss_pred h-hHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-----cch-------------------
Confidence 4 343 3442 11223333222221 111122234445555555444222 000
Q ss_pred hhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCC-CCeEeEccCCCcccchhhhhHHHHhhhcccccCc
Q 048779 397 PALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICS-LKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRL 475 (911)
Q Consensus 397 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L 475 (911)
.++..... |+.|..+.+ .+...+.-+. . ..+.|
T Consensus 328 -------------------------------------~~l~v~~~~l~~ln~s~n-~l~~lp~~~e-~-------~~~~L 361 (1081)
T KOG0618|consen 328 -------------------------------------NFLAVLNASLNTLNVSSN-KLSTLPSYEE-N-------NHAAL 361 (1081)
T ss_pred -------------------------------------HHHhhhhHHHHHHhhhhc-cccccccccc-h-------hhHHH
Confidence 00000000 111111111 1111110000 0 12678
Q ss_pred ceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCC--CCCCcEEEeccCCCCCccchhhhcCCCCCccEEEE
Q 048779 476 EYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVAL--PSKLKKIEISECDALKSLPEAWMCDTNSSLEILYI 553 (911)
Q Consensus 476 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 553 (911)
+.|.+.+|...+...+.+.++++|+.|++++ +++.++|+..+ +..|++|++++|. ++.++... ..++.|++|..
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tv--a~~~~L~tL~a 437 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTV--ANLGRLHTLRA 437 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccch-hhhhhHHH--HhhhhhHHHhh
Confidence 8888888887777666788899999999999 89999988544 7889999999998 88998777 68899999988
Q ss_pred ecCCCCccccCCCCCCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCC
Q 048779 554 ESCHSLRYIAGVQLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPS 616 (911)
Q Consensus 554 ~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 616 (911)
.+ +.+..+|.....+.|+.++++.+ +|+.+..+.... +++|++||+++...
T Consensus 438 hs-N~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p----------~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HS-NQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALP----------SPNLKYLDLSGNTR 488 (1081)
T ss_pred cC-CceeechhhhhcCcceEEecccc-hhhhhhhhhhCC----------CcccceeeccCCcc
Confidence 77 78888886666678888888844 566654444332 23555555555443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.9e-22 Score=243.87 Aligned_cols=308 Identities=21% Similarity=0.307 Sum_probs=200.9
Q ss_pred CCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCCC
Q 048779 440 CSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVALP 519 (911)
Q Consensus 440 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 519 (911)
.+|+.|.+.++ .++.++... .+.+|+.|++.++. +..++.++..+++|+.|+++++..++.+|....+
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f----------~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNF----------RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcC----------CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 34666666665 234433221 13567777777664 3556666666777777777776667777766667
Q ss_pred CCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCCCCCCCCceeecccCCCcccccccccccccCCccc
Q 048779 520 SKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGVQLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSR 599 (911)
Q Consensus 520 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 599 (911)
++|++|++++|..+..++..+ ..+++|+.|++++|+.++.+|....+++|+.|++++|..++.+ |..
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~--p~~--------- 723 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF--PDI--------- 723 (1153)
T ss_pred CcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc--ccc---------
Confidence 777777777777776666654 5677777777777777777766555566777777777666554 221
Q ss_pred cccccccceEeeecCCCccccccCCCCchhhhhhhccCCCCCCcEEEEcCCCCcc------ch-hhhhccCCcccEEEec
Q 048779 600 RYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLCVYGCSKLE------SI-AERLDDNTSLKIIRID 672 (911)
Q Consensus 600 ~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~------~~-~~~~~~l~~L~~L~l~ 672 (911)
.++|++|+++++. ++. +|.. + .+ ++|++|.+.++.... .+ +......++|+.|+++
T Consensus 724 ---~~nL~~L~L~~n~-i~~-lP~~-----~------~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 724 ---STNISWLDLDETA-IEE-FPSN-----L------RL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred ---cCCcCeeecCCCc-ccc-cccc-----c------cc-cccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 1266667666643 332 2211 1 11 556666666543211 11 1112234678888888
Q ss_pred ccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccccCCCccCcEEeCC-ccCccc
Q 048779 673 FCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLKSLQELRIGG-ELPSLE 751 (911)
Q Consensus 673 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~~l~ 751 (911)
+|+.+..+|..++++++|+.|++++|..++.+|... .+++|+.|++++|..++.+|.. .++|++|++++ .+..+|
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP 862 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVP 862 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccCh
Confidence 888787788778888888888888888888887654 6778888888888887777653 35777888877 777777
Q ss_pred cCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCC
Q 048779 752 EDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCD 797 (911)
Q Consensus 752 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 797 (911)
...+.+++|+.|++++|+.+..++ ..+..+++|+.+++++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~----~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVS----LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccC----cccccccCCCeeecCCCc
Confidence 666777788888888888777655 345677788888888764
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=4.3e-24 Score=222.37 Aligned_cols=112 Identities=14% Similarity=0.268 Sum_probs=94.1
Q ss_pred eeeccCCccc-ccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 2 LLNSRHGYLA-HSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 2 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
-.|+|+|.++ +..|.+...|.+++.|.|.+..+..+|+.++.+.+|+.|.+++|++..+.-.++.|+.||.+++..|+.
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L 90 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL 90 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc
Confidence 3688999888 568888888999999999999999999999999999999999999888877788899999999988543
Q ss_pred c-ccchhhhhccCcccEEEcCCCcccccCcCCCCC
Q 048779 81 L-KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGK 114 (911)
Q Consensus 81 ~-~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~ 114 (911)
- .-+|..|.+|..|..|||+.|+ +++.|.++..
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~ 124 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEY 124 (1255)
T ss_pred ccCCCCchhcccccceeeecchhh-hhhcchhhhh
Confidence 2 4568889999999999999998 8888775433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=9.3e-23 Score=212.54 Aligned_cols=309 Identities=22% Similarity=0.232 Sum_probs=207.5
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCc--cccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~ 79 (911)
.|.++||++. ++...+..++.||.+.+.+|++. -+|..+.++..|.+||||+|++++.|..+..-+++-+|+||+ +
T Consensus 59 HLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N 136 (1255)
T KOG0444|consen 59 HLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-N 136 (1255)
T ss_pred hhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-C
Confidence 4667888887 66778888999999999999986 578889999999999999999999999999999999999999 5
Q ss_pred ccccchhh-hhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 80 RLKKLCAD-MGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 80 ~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
.+..||.. +.+|+.|-.|||++|. +..+|+.+.+|.+|+.|.+..... ...++++
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL----~hfQLrQ------------------- 192 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL----NHFQLRQ------------------- 192 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh----hHHHHhc-------------------
Confidence 68889854 7899999999999999 999999999999999996543321 1222222
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
+..++.|+.|.++.. ..+...++.++..+.+|..++++.|..+.+|..+.. +.+|++|+|+
T Consensus 193 -------LPsmtsL~vLhms~T----------qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS 253 (1255)
T KOG0444|consen 193 -------LPSMTSLSVLHMSNT----------QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLS 253 (1255)
T ss_pred -------Cccchhhhhhhcccc----------cchhhcCCCchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccC
Confidence 233344455555421 122233455666667788888888888888877765 7888888888
Q ss_pred CCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceee
Q 048779 239 DCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELH 318 (911)
Q Consensus 239 ~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 318 (911)
+|.+.+---..+...+|++|+++.|. +..++..... +++|++|.+.+.. +. ...++.|++.+.+|+.+.
T Consensus 254 ~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcK------L~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCK------LTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhccccch-hccchHHHhh------hHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHH
Confidence 87764433344556777888888774 5555544333 5666666655432 11 112223366777777777
Q ss_pred cccCCCcccCCCCC---CCccceEEEeccCC--cccccCCCCccceEEEcCCcch
Q 048779 319 ILRCSKLRGTFPKC---LPALQMLVIYRCEE--FSVSVTSLPALCNLQINGCEEL 368 (911)
Q Consensus 319 l~~c~~l~~~~~~~---l~~L~~L~l~~~~~--l~~~~~~l~~L~~L~l~~~~~~ 368 (911)
..++ ++. .+|.+ +++|+.|.++.+.- +...+.-++.|+.|++++|..+
T Consensus 323 aanN-~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AANN-KLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhcc-ccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 7765 565 55642 23444444444332 2223333444444444444433
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=8.1e-17 Score=160.35 Aligned_cols=110 Identities=24% Similarity=0.349 Sum_probs=84.5
Q ss_pred cccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccchhh-hh
Q 048779 13 SILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKLCAD-MG 89 (911)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-i~ 89 (911)
.+|.++. +....++|..|.|+.| |.+|+.+++||.|||++|.|+.| |.+|.+|+.|..|-+-+++.++.+|.. |+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 5666665 4677788888888888 47788888888888888888888 677888888888777776788888855 78
Q ss_pred ccCcccEEEcCCCcccccCcCC-CCCcccccccccee
Q 048779 90 NLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFV 125 (911)
Q Consensus 90 ~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~ 125 (911)
+|..|+.|.+.-|+ +..++.+ +..|++|..|..++
T Consensus 138 gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 138 GLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccc
Confidence 88888888888888 6666553 67777776664433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.5e-14 Score=163.43 Aligned_cols=250 Identities=21% Similarity=0.201 Sum_probs=138.5
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
+||++.|.++ .+|+.+. ++|+.|.+.+|+++.+|. ..++|++|++++|+|+.+|.. .++|+.|++++| .+
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L 274 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PL 274 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC-ch
Confidence 5777777776 5676664 367777787777777765 246777888877777777643 356777777774 45
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhh
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNA 161 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~ 161 (911)
..+|... .+|+.|++++|. +..+|.. +++|+.|
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~L---------------------------------------- 307 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQEL---------------------------------------- 307 (788)
T ss_pred hhhhhch---hhcCEEECcCCc-ccccccc---cccccee----------------------------------------
Confidence 5565422 456677777777 5555542 1233333
Q ss_pred hhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCC
Q 048779 162 KEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCG 241 (911)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~ 241 (911)
+++.|....++ . ....|+.|++.+|.+..+|.. ..+|+.|++++|.
T Consensus 308 --------------dLS~N~L~~Lp-------------~--lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~ 353 (788)
T PRK15387 308 --------------SVSDNQLASLP-------------A--LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQ 353 (788)
T ss_pred --------------ECCCCccccCC-------------C--CcccccccccccCcccccccc-----ccccceEecCCCc
Confidence 33322221110 0 013455666666666666642 3567778887776
Q ss_pred CCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeeccc
Q 048779 242 MCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILR 321 (911)
Q Consensus 242 ~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 321 (911)
.. .+|.+ .++|+.|++++|. +..++.. ..+|+.|+++++. +..+. ...++|+.|++++
T Consensus 354 Ls-~LP~l--p~~L~~L~Ls~N~-L~~LP~l---------~~~L~~LdLs~N~-Lt~LP--------~l~s~L~~LdLS~ 411 (788)
T PRK15387 354 LA-SLPTL--PSELYKLWAYNNR-LTSLPAL---------PSGLKELIVSGNR-LTSLP--------VLPSELKELMVSG 411 (788)
T ss_pred cC-CCCCC--Ccccceehhhccc-cccCccc---------ccccceEEecCCc-ccCCC--------CcccCCCEEEccC
Confidence 53 45533 2467777777664 3333211 3456666666542 22211 1134566677776
Q ss_pred CCCcccCCCCCCCccceEEEeccCC--cccccCCCCccceEEEcCCc
Q 048779 322 CSKLRGTFPKCLPALQMLVIYRCEE--FSVSVTSLPALCNLQINGCE 366 (911)
Q Consensus 322 c~~l~~~~~~~l~~L~~L~l~~~~~--l~~~~~~l~~L~~L~l~~~~ 366 (911)
| .++ .+|..+.+|+.|++.+|.. +...+..+++|+.|++++|.
T Consensus 412 N-~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 N-RLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 6 455 4555444555555554432 12223334444555555444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=2e-16 Score=157.59 Aligned_cols=385 Identities=18% Similarity=0.188 Sum_probs=216.5
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccC-CCCCcCChh-hhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSG-TEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~-~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
.++|..|+|+...|.+|+.+++||.|+|++|+|+.| |++|.+++.|-.|.+.+ |+|+++|.. |.+|..|+.|.+.-|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 478999999988889999999999999999999999 99999999999988888 899999955 999999999999984
Q ss_pred cccccch-hhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccc-----c--ceee
Q 048779 79 RRLKKLC-ADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLR-----G--TLKI 149 (911)
Q Consensus 79 ~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~-----~--~l~~ 149 (911)
.+..++ ..+..|++|..|.+.+|. +..++. .+..+.+++.+..-.........++.+..-..-. + ...-
T Consensus 151 -~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 151 -HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred -hhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 566665 568999999999999999 888887 5888888888854333322222222211110000 0 0000
Q ss_pred cccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCC-CCCcCCCC
Q 048779 150 SKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKF-PTWLGDSS 228 (911)
Q Consensus 150 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~~~ 228 (911)
..+...... ......+. .+++.+--. ....+++ ........+..+++|++|++++|.++.+ +.|+..
T Consensus 229 ~rl~~~Ri~-q~~a~kf~--c~~esl~s~-~~~~d~~------d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~-- 296 (498)
T KOG4237|consen 229 YRLYYKRIN-QEDARKFL--CSLESLPSR-LSSEDFP------DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG-- 296 (498)
T ss_pred HHHHHHHhc-ccchhhhh--hhHHhHHHh-hccccCc------CCcChHHHHhhcccceEeccCCCccchhhhhhhcc--
Confidence 000000000 00000000 001111000 0000000 0011112356677788888888777766 455543
Q ss_pred CCcccEEEEeCCCCCCCCC--CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCc----c----ccc
Q 048779 229 FSNLVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQ----E----WED 298 (911)
Q Consensus 229 ~~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~----l~~ 298 (911)
...++.|.|.+|+. +.+. .|.++..|+.|++.+|. ++.+..-.+.. ...|.+|.+-..+ . +.+
T Consensus 297 ~a~l~eL~L~~N~l-~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~-----~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 297 AAELQELYLTRNKL-EFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQT-----LFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhhhhhhcCcchH-HHHHHHhhhccccceeeeecCCe-eEEEecccccc-----cceeeeeehccCcccCccchHHHHH
Confidence 77777777777765 2333 56677777888887775 44443322222 4556666664322 1 112
Q ss_pred ccccCCCCccccC---CccceeecccCC--CcccCC------------CCCCCccceEEEeccCCcccccCCCC-ccceE
Q 048779 299 WIPHGSSQGVERF---PKLRELHILRCS--KLRGTF------------PKCLPALQMLVIYRCEEFSVSVTSLP-ALCNL 360 (911)
Q Consensus 299 ~~~~~~~~~~~~~---~~L~~L~l~~c~--~l~~~~------------~~~l~~L~~L~l~~~~~l~~~~~~l~-~L~~L 360 (911)
|.......+...+ ..++.+.+++.. ..+... |...+.+....--.+..+.......| .-.++
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~tel 449 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTEL 449 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHH
Confidence 2221111111112 235566665541 111011 11222222221111112222222222 34567
Q ss_pred EEcCCcchhhhcccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEec
Q 048779 361 QINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGIN 420 (911)
Q Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 420 (911)
.+.++.+..+.-..+.++ .+++++++........+++ +.+|..|-++
T Consensus 450 yl~gn~~~~vp~~~~~~l-~~dls~n~i~~Lsn~tf~n------------~tql~tlils 496 (498)
T KOG4237|consen 450 YLDGNAITSVPDELLRSL-LLDLSNNRISSLSNYTFSN------------MTQLSTLILS 496 (498)
T ss_pred hcccchhcccCHHHHhhh-hcccccCceehhhcccccc------------hhhhheeEEe
Confidence 777776655544455666 7788888877777666654 5556555554
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=6.2e-17 Score=142.08 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=48.9
Q ss_pred CCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEc
Q 048779 20 KLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNN 99 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L 99 (911)
.+.+++.|.|++|.++.+|..++++++|++|++++|+|+++|..++.+++|++|++.- +.+..+|.+|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 3445555556666666555556666666666666666666666666666666666655 345555566666666666666
Q ss_pred CCCc
Q 048779 100 SNTD 103 (911)
Q Consensus 100 ~~~~ 103 (911)
++|+
T Consensus 110 tynn 113 (264)
T KOG0617|consen 110 TYNN 113 (264)
T ss_pred cccc
Confidence 6555
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=2.2e-13 Score=155.70 Aligned_cols=115 Identities=30% Similarity=0.376 Sum_probs=62.5
Q ss_pred CccEEeeccccCcccccccccCCCccCcEEeCC-ccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEE
Q 048779 713 KLTRLEIYDCKRLEALPKGLHNLKSLQELRIGG-ELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHL 791 (911)
Q Consensus 713 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L 791 (911)
+|+.|++++ ++++.+|.. .++|+.|++++ .+..+|. .+.+|+.|++++|.... ++. ..++|+.|
T Consensus 343 ~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~---l~~~L~~LdLs~N~Lt~-LP~-------l~s~L~~L 407 (788)
T PRK15387 343 GLQELSVSD-NQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LPV-------LPSELKEL 407 (788)
T ss_pred ccceEecCC-CccCCCCCC---CcccceehhhccccccCcc---cccccceEEecCCcccC-CCC-------cccCCCEE
Confidence 444555544 344444432 12344444444 4444432 23455666666554332 211 12466777
Q ss_pred EeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCccccccccCCCCCcceEecccCCCcc
Q 048779 792 SIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSSSIVDLQNLTELRLHDCPKLK 858 (911)
Q Consensus 792 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 858 (911)
++++| .+..+|. .+.+|+.|++++ +.++.+|..+..+++|+.|++++ +.+.
T Consensus 408 dLS~N--~LssIP~------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 408 MVSGN--RLTSLPM------------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG-NPLS 458 (788)
T ss_pred EccCC--cCCCCCc------------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCC-CCCC
Confidence 77764 3445553 235677777777 56778887777788888888887 4443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.8e-15 Score=131.75 Aligned_cols=117 Identities=30% Similarity=0.413 Sum_probs=73.0
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc-
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL- 81 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~- 81 (911)
|-||||.++ .+|+.+..+.+|++|++.+|+|+++|.+++.+++||.|++.-|++..+|..|+.++.|++||+++|+..
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccc
Confidence 446666665 456666666666666666666666666666666666666666666666666666666666666664332
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccc
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
..+|..|..++.|+-|++++|+ ...+|.+++++++|+-|
T Consensus 117 ~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 3456666666666666666666 55566665555555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=7e-13 Score=152.88 Aligned_cols=107 Identities=15% Similarity=0.239 Sum_probs=74.9
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
+|+++++.++ .+|..+. +.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++| .+
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L 253 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RI 253 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-cc
Confidence 5777887777 4666564 478888888888888876554 478888888888888876553 46888888885 45
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccc
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
..+|..+. .+|+.|++++|. +..+|..+. .+|+.|
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYL 288 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEE
Confidence 67776654 478888888877 666776543 245444
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.35 E-value=8.8e-13 Score=154.48 Aligned_cols=234 Identities=26% Similarity=0.308 Sum_probs=149.8
Q ss_pred CCCCCEEEccCCC--Ccccc-ccccCCCCCCeEEccCC-CCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccE
Q 048779 21 LQSLRVFSLRGYR--ISELP-DSVGDLRYLRHLNLSGT-EIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHH 96 (911)
Q Consensus 21 l~~L~~L~L~~n~--l~~lp-~~~~~l~~L~~L~L~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 96 (911)
.++|++|-+.+|. +..++ +.|..++.|++|||++| .+.++|+.|++|-+||+|++++ ..+..+|..+++|++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhe
Confidence 3478888888886 56664 34677888999999877 6778888888898999888888 567788888888889999
Q ss_pred EEcCCCcccccCcCCCCCccccccccceecc-CCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEE
Q 048779 97 LNNSNTDLLKEMPVGIGKLTCLQTLCNFVVG-KDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLREL 175 (911)
Q Consensus 97 L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 175 (911)
|++..+.....+|..+..|++|+.|..+... ......+.++..|++|+ .+.+..... .....+.....|..+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRSL 695 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHHH
Confidence 9888887666665556668888888766654 33345566666666665 333321111 000112222222221
Q ss_pred EEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCC-CCcCC---CC-CCcccEEEEeCCCCCCCCCCCC
Q 048779 176 LLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFP-TWLGD---SS-FSNLVTLKFEDCGMCTALPSVG 250 (911)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~l~~---~~-~~~L~~L~L~~~~~~~~l~~l~ 250 (911)
...-.. ...........+..+.+|+.|.+..+.+.+.. .|... .. |+++..+.+.+|.....+.+..
T Consensus 696 ~~~l~~--------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 696 LQSLSI--------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred hHhhhh--------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 111000 00112234456667788888888887765421 22211 11 5567777777887766666555
Q ss_pred CcCcccceeccccccccccC
Q 048779 251 QLPSLKHLTVRGMSRVKRLG 270 (911)
Q Consensus 251 ~l~~L~~L~l~~~~~~~~~~ 270 (911)
..|+|+.|++..|..++++.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccCcccEEEEecccccccCC
Confidence 66888888888888776654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=4.2e-12 Score=146.52 Aligned_cols=197 Identities=17% Similarity=0.221 Sum_probs=130.2
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
+.|+|++|+++ .+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++ +.
T Consensus 202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~ 273 (754)
T PRK15370 202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH-NK 273 (754)
T ss_pred cEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC-Cc
Confidence 46899999998 5777665 589999999999999987664 479999999999999998764 5899999998 46
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN 160 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~ 160 (911)
+..+|..+. .+|+.|++++|. +..+|..+. ++|+.|+.... .+....
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N------------------------~Lt~LP---- 320 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN------------------------SLTALP---- 320 (754)
T ss_pred cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC------------------------ccccCC----
Confidence 778887664 589999999998 777776543 24555532211 111000
Q ss_pred hhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCC
Q 048779 161 AKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDC 240 (911)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~ 240 (911)
..+ .++|+.|.++.|....++. .+ .++|+.|++++|.+..+|..+ .++|+.|++++|
T Consensus 321 ---~~l--~~sL~~L~Ls~N~Lt~LP~------------~l--~~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N 377 (754)
T PRK15370 321 ---ETL--PPGLKTLEAGENALTSLPA------------SL--PPELQVLDVSKNQITVLPETL----PPTITTLDVSRN 377 (754)
T ss_pred ---ccc--cccceeccccCCccccCCh------------hh--cCcccEEECCCCCCCcCChhh----cCCcCEEECCCC
Confidence 001 1356666665554422211 11 246777777777666666543 356777777776
Q ss_pred CCCCCCC-CCCCcCcccceeccccc
Q 048779 241 GMCTALP-SVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 241 ~~~~~l~-~l~~l~~L~~L~l~~~~ 264 (911)
... .+| .+. ..|+.|++++|.
T Consensus 378 ~Lt-~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 378 ALT-NLPENLP--AALQIMQASRNN 399 (754)
T ss_pred cCC-CCCHhHH--HHHHHHhhccCC
Confidence 653 344 221 356666666664
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=4.4e-12 Score=148.68 Aligned_cols=255 Identities=25% Similarity=0.317 Sum_probs=165.8
Q ss_pred ccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCC--CCcCChh-hhcCCCccEEecCCccccccchhhhhccCcc
Q 048779 18 LFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTE--IRTLPES-VNKLYNLHTLLLVGCRRLKKLCADMGNLIKL 94 (911)
Q Consensus 18 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~--l~~lp~~-~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 94 (911)
.......|...+.+|.+..++.+. ..++|++|-+.+|. +..++.. |..++.|++||+++|.....+|..|++|.+|
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred ccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 345578899999999998887655 34489999999996 6777654 8889999999999988899999999999999
Q ss_pred cEEEcCCCcccccCcCCCCCccccccccceeccCCC--CCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCc
Q 048779 95 HHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDS--GSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNL 172 (911)
Q Consensus 95 ~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~--~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 172 (911)
|+|+++++. +..+|.++.+|+.|.+|+....+... +.....+.+|..+. ...-. ..........+..+++|
T Consensus 598 ryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~----l~~s~--~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 598 RYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR----LPRSA--LSNDKLLLKELENLEHL 670 (889)
T ss_pred hcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEE----eeccc--cccchhhHHhhhcccch
Confidence 999999999 88999999999999999776554322 12222244454443 22111 12222233345666777
Q ss_pred cEEEEEEeecCCCCCCccchhhcccCCCCCCCCCcc----EEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCC-
Q 048779 173 RELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLE----QFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP- 247 (911)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~- 247 (911)
+.+.+..... .....+..+..|. .+.+.+......+..+. .+.+|+.|.+.+|...+...
T Consensus 671 ~~ls~~~~s~-------------~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~--~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 671 ENLSITISSV-------------LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLG--SLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hhheeecchh-------------HhHhhhhhhHHHHHHhHhhhhcccccceeecccc--cccCcceEEEEcCCCchhhcc
Confidence 7776642111 1111112222222 23322222222222232 48999999999999864322
Q ss_pred C-----CCC-cCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCccccccccc
Q 048779 248 S-----VGQ-LPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPH 302 (911)
Q Consensus 248 ~-----l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 302 (911)
. ... ++++.++.+.+|......... .-.++|+.|.+..|..+++..+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-------~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWL-------LFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchh-------hccCcccEEEEecccccccCCCH
Confidence 1 112 557777777777665554321 11689999999999888776654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=2.5e-12 Score=138.38 Aligned_cols=103 Identities=24% Similarity=0.263 Sum_probs=69.4
Q ss_pred CeeeccCCcccc-cccccccCCCCCCEEEccCCCCc-----cccccccCCCCCCeEEccCCCCCc-------CChhhhcC
Q 048779 1 MLLNSRHGYLAH-SILPKLFKLQSLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIRT-------LPESVNKL 67 (911)
Q Consensus 1 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~~~l~~-------lp~~~~~L 67 (911)
+.|+|..+++++ ..+..+..+..|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+
T Consensus 1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 357888888874 34444577778888888888874 355566777778888888876652 23345667
Q ss_pred CCccEEecCCccccccchhhhhccCc---ccEEEcCCCc
Q 048779 68 YNLHTLLLVGCRRLKKLCADMGNLIK---LHHLNNSNTD 103 (911)
Q Consensus 68 ~~L~~L~l~~~~~~~~lp~~i~~L~~---L~~L~L~~~~ 103 (911)
++|+.|++++|......+..+..+.+ |++|++++|.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 77777777776544444555555544 7777777776
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=1.7e-12 Score=131.09 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=94.5
Q ss_pred CcccEEEEeCCCCCCCCC---CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCC
Q 048779 230 SNLVTLKFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQ 306 (911)
Q Consensus 230 ~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 306 (911)
..|+.|.+.+|...+.-+ ....+|++++|.+.+|..+++..-..+. ..+++|+++.+..|+.+++......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~l-- 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYL-- 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHH--
Confidence 456777788777655444 2346788888888888766654322222 2278888888888888877655433
Q ss_pred ccccCCccceeecccCCCccc----CCCCCCCccceEEEeccCCccc-----ccCCCCccceEEEcCCcchhh-----hc
Q 048779 307 GVERFPKLRELHILRCSKLRG----TFPKCLPALQMLVIYRCEEFSV-----SVTSLPALCNLQINGCEELSV-----SL 372 (911)
Q Consensus 307 ~~~~~~~L~~L~l~~c~~l~~----~~~~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~-----~~ 372 (911)
...+++|++|+++.|+.+++ .+..+...++++...+|..... .-..++.+.++++..|..+++ .-
T Consensus 212 -a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred -HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 56789999999999988775 2334555566666666665433 112244555566666655543 12
Q ss_pred ccccccccccccccCC
Q 048779 373 TSLPALCNLQIGRCEE 388 (911)
Q Consensus 373 ~~l~~L~~L~l~~~~~ 388 (911)
..+..|+.++.++|..
T Consensus 291 ~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTD 306 (483)
T ss_pred hhhhHhhhhcccCCCC
Confidence 2344555555555554
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.10 E-value=2.6e-12 Score=129.85 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=51.1
Q ss_pred CcEEEEcCCCCcc--chhhhhccCCcccEEEeccccccccccc--ccccCCCcceEEeccCccccccCCC--CCCCCCcc
Q 048779 642 LKSLCVYGCSKLE--SIAERLDDNTSLKIIRIDFCEKLKILPS--GLHNLRQLLEIKIWWCGNLVTFPEG--GLPCAKLT 715 (911)
Q Consensus 642 L~~L~l~~c~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~ 715 (911)
++.+...+|..+. .+-..-+.+..+.++++.+|..++.... .-..+..|+.|..++|..+...+-. ...+++|+
T Consensus 244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 4444444554432 2222233444555555656655544320 1123566677777777665443321 34556777
Q ss_pred EEeeccccCcccccc--cccCCCccCcEEeCC
Q 048779 716 RLEIYDCKRLEALPK--GLHNLKSLQELRIGG 745 (911)
Q Consensus 716 ~L~l~~c~~l~~~~~--~l~~l~~L~~L~l~~ 745 (911)
.+.+..|..+..... --.+.+.|+.+++.+
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 777777766543211 123445555555544
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.3e-10 Score=105.94 Aligned_cols=122 Identities=28% Similarity=0.312 Sum_probs=46.2
Q ss_pred CeeeccCCccccccccccc-CCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhh-hcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLF-KLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESV-NKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~-~~L~~L~~L~l~~~ 78 (911)
+.|+|++|.|+.. ..+. .+.+|++|+|++|.|+.++. +..+++|++|++++|.|+.+++.+ ..+++|+.|++++|
T Consensus 22 ~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 22 RELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccc--cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 3577777777642 3454 56778888888888877754 677788888888888887776554 45778888888774
Q ss_pred cccccch--hhhhccCcccEEEcCCCcccccCcCC----CCCccccccccceecc
Q 048779 79 RRLKKLC--ADMGNLIKLHHLNNSNTDLLKEMPVG----IGKLTCLQTLCNFVVG 127 (911)
Q Consensus 79 ~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~~----~~~L~~L~~L~~~~~~ 127 (911)
.+..+- ..++.+++|++|++.+|. +...+.. +..+++|+.|+...+.
T Consensus 99 -~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 99 -KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp ----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred -cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 333332 446677788888888877 3333431 5667777777655443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=5.9e-11 Score=127.68 Aligned_cols=106 Identities=24% Similarity=0.188 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCc------cchhhhhccCCcccEEEecccccccccccccccCCC---cceEEeccCcccc----ccCC
Q 048779 640 PSLKSLCVYGCSKL------ESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQ---LLEIKIWWCGNLV----TFPE 706 (911)
Q Consensus 640 ~~L~~L~l~~c~~l------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~---L~~L~l~~~~~l~----~~~~ 706 (911)
++++.++++++..- ..++..+..+++|+.|++++|......+..+..+.. |++|++++|.... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 44555555554322 223444555666666666666554333333333333 6666666654221 1111
Q ss_pred CCCCC-CCccEEeeccccCcc----cccccccCCCccCcEEeCC
Q 048779 707 GGLPC-AKLTRLEIYDCKRLE----ALPKGLHNLKSLQELRIGG 745 (911)
Q Consensus 707 ~~~~~-~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~ 745 (911)
.+..+ ++|+.|++++|..-. .++..+..+++|++|++++
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 12233 566666666653221 1222344445566665554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=2.6e-11 Score=127.19 Aligned_cols=115 Identities=25% Similarity=0.438 Sum_probs=75.6
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLK 82 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 82 (911)
.||+.|++. .+|..+..+..|+.+.|..|.+..+|.+++++..|.+|+|+.|++..+|..++.|+ |++|-+++ ++++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLT 156 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-Cccc
Confidence 466666665 56666666666666666666666666666666667777777676666666666665 66666666 4566
Q ss_pred cchhhhhccCcccEEEcCCCcccccCcCCCCCccccccc
Q 048779 83 KLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 83 ~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
.+|+.|+.+.+|..||.++|+ +..+|..++.+.+|+.|
T Consensus 157 ~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred cCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 666666666666666766666 66666666666665555
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=6.6e-09 Score=115.03 Aligned_cols=117 Identities=30% Similarity=0.447 Sum_probs=92.5
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCC-CCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLR-YLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
++++.|.+. ..+..+..+..++.|++.+|.++++|.....+. +|+.|++++|.+.++|..+..+++|+.|++++ +.+
T Consensus 98 l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l 175 (394)
T COG4886 98 LDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDL 175 (394)
T ss_pred eeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chh
Confidence 556666653 223444555788999999999999988777774 89999999999998887889999999999999 568
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
..+|...+.+++|+.|++++|. +..+|..+....+|++|.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhh
Confidence 8888877789999999999998 888887766666676663
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=1.9e-09 Score=113.55 Aligned_cols=125 Identities=26% Similarity=0.367 Sum_probs=94.6
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
|+|||+.|+++ .+|..+..+ -|++|.+++|.++.+|..++.+..|..||.+.|.+..+|+.++++.+|+.|++.. +.
T Consensus 124 t~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~ 200 (722)
T KOG0532|consen 124 TFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NH 200 (722)
T ss_pred HHhhhccchhh-cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hh
Confidence 45777777776 455555443 4777777788888787777777778888888888888887788888888888887 45
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCC
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDS 130 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~ 130 (911)
+..+|++.. .-.|..||++.|+ +..+|..|.+|+.|++|.+......+
T Consensus 201 l~~lp~El~-~LpLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 201 LEDLPEELC-SLPLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhCCHHHh-CCceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCC
Confidence 777777777 5568888999888 88899999999999988665555444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=1.4e-08 Score=95.03 Aligned_cols=113 Identities=27% Similarity=0.389 Sum_probs=36.7
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCCCcccccccc-CCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccccc
Q 048779 5 SRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVG-DLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKK 83 (911)
Q Consensus 5 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~ 83 (911)
|+.+-|. . .+.+.+..+++.|+|++|.|+.+.. ++ .+.+|+.|++++|.|+.+ +.+..+++|+.|++++ +.++.
T Consensus 4 lt~~~i~-~-~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~-N~I~~ 78 (175)
T PF14580_consen 4 LTANMIE-Q-IAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSN-NRISS 78 (175)
T ss_dssp ----------------------------------S---TT-TT--EEE-TTS--S---TT----TT--EEE--S-S---S
T ss_pred ccccccc-c-ccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCC-CCCCc
Confidence 4444443 2 2334455678999999999998854 65 689999999999999999 5789999999999999 56777
Q ss_pred chhhh-hccCcccEEEcCCCcccccCcC--CCCCccccccccc
Q 048779 84 LCADM-GNLIKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLCN 123 (911)
Q Consensus 84 lp~~i-~~L~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~~ 123 (911)
+++.+ ..+++|++|++++|. +..+.. .+..+++|+.|+.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 76666 469999999999999 655543 2455666666644
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4e-09 Score=102.05 Aligned_cols=119 Identities=27% Similarity=0.330 Sum_probs=93.0
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.||||+|.|+ .+..+..-.+++|+|+++.|.|..+-. ++.+.+|..||||+|.++++.-.-.+|-+.+.|.+++ +.+
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~i 364 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKI 364 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhH
Confidence 4788888887 677778888888888888888887754 8888888888888888887743345778888888888 456
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcC--CCCCcccccccccee
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLCNFV 125 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~~~~ 125 (911)
..+ +++++|.+|..||+++|+ +..+.. .|++|+-|+.+....
T Consensus 365 E~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 365 ETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcC
Confidence 665 678889999999999998 666653 588888888875443
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=3.5e-08 Score=114.07 Aligned_cols=102 Identities=26% Similarity=0.345 Sum_probs=68.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCc-cccccccCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~~~ 79 (911)
.|+|++|.+.+.+|..+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|+.++++++|++|++++|.
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 3666777777777777766777777777777765 55666677777777777777666 566667777777777777765
Q ss_pred ccccchhhhhcc-CcccEEEcCCCc
Q 048779 80 RLKKLCADMGNL-IKLHHLNNSNTD 103 (911)
Q Consensus 80 ~~~~lp~~i~~L-~~L~~L~L~~~~ 103 (911)
....+|..++.+ .++..+++.+|.
T Consensus 502 l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 502 LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ccccCChHHhhccccCceEEecCCc
Confidence 556666666543 455666666665
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.7e-08 Score=111.74 Aligned_cols=117 Identities=27% Similarity=0.425 Sum_probs=101.8
Q ss_pred eeeccCCcccccccccccCCC-CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQ-SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
.|++.+|+++ .+++...... +|+.|++++|++..+|..+..+++|+.|++++|++.++|...+.+++|+.|++++ +.
T Consensus 120 ~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~ 197 (394)
T COG4886 120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NK 197 (394)
T ss_pred EEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-Cc
Confidence 6889999998 6777777775 9999999999999998889999999999999999999998887999999999999 67
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccc
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
+..+|..++.+..|++|++++|. ....+..+.+++++..+
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 99999988899999999999997 45555556666665555
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=2.9e-07 Score=96.78 Aligned_cols=93 Identities=31% Similarity=0.513 Sum_probs=51.2
Q ss_pred hccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccccCCCccC
Q 048779 660 LDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLKSLQ 739 (911)
Q Consensus 660 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 739 (911)
+..+.+++.|++++| .++.+| .+ ..+|++|.+++|..++.+|..+ .++|+.|.+++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 334456666666666 455555 11 2357777777777776666533 23677777777766665553 355
Q ss_pred cEEeCC-ccCccccCCCCCCCCCceEEec
Q 048779 740 ELRIGG-ELPSLEEDDGLPTDLRSLEIIF 767 (911)
Q Consensus 740 ~L~l~~-~~~~l~~~~~~~~~L~~L~l~~ 767 (911)
.|+++. ....+ ..+|++|++|.+.+
T Consensus 116 ~L~L~~n~~~~L---~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSATDSI---KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCCCccc---ccCcchHhheeccc
Confidence 555544 22222 23444555555543
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=9.2e-08 Score=73.26 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=30.3
Q ss_pred CCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCc
Q 048779 23 SLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~ 78 (911)
+|++|++++|.++.+| ++|.++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555553 34555555555555555555554 23555555555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=3.8e-08 Score=95.39 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=91.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
|+|++|+|.|.. ..++..+.+|+.|+|++|.++++-..-..+-|.++|.|++|.|.++ +.+++|..|..||+++| .
T Consensus 310 r~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~ 385 (490)
T KOG1259|consen 310 RRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN-Q 385 (490)
T ss_pred eEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecccccc-c
Confidence 689999999985 3458889999999999999999877667899999999999999998 78999999999999995 4
Q ss_pred cccch--hhhhccCcccEEEcCCCcccccCcC
Q 048779 81 LKKLC--ADMGNLIKLHHLNNSNTDLLKEMPV 110 (911)
Q Consensus 81 ~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~ 110 (911)
+..+- ..|++|+.|+++.+.+|. +..+|.
T Consensus 386 Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 386 IEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 55553 559999999999999999 665554
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.1e-07 Score=71.28 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=52.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCC
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEI 57 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l 57 (911)
+.|++++|+++...+..|..+++|++|++++|.++.+ |++|.++++|++|++++|+|
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999977667889999999999999999999 67899999999999999975
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5e-08 Score=99.94 Aligned_cols=85 Identities=24% Similarity=0.242 Sum_probs=40.5
Q ss_pred cCCCCCCEEEccCCCCcccc--ccccCCCCCCeEEccCCCCCcC---ChhhhcCCCccEEecCCccccccchhhh-hccC
Q 048779 19 FKLQSLRVFSLRGYRISELP--DSVGDLRYLRHLNLSGTEIRTL---PESVNKLYNLHTLLLVGCRRLKKLCADM-GNLI 92 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~L~~~~l~~l---p~~~~~L~~L~~L~l~~~~~~~~lp~~i-~~L~ 92 (911)
.++++|+...|.++.+...+ .....++++|.||||+|-+... -.....|++|+.|+++.|...--..... ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34445555555555554443 2344556666666666544422 1224455566666665542211111111 2345
Q ss_pred cccEEEcCCCc
Q 048779 93 KLHHLNNSNTD 103 (911)
Q Consensus 93 ~L~~L~L~~~~ 103 (911)
+|+.|.++.|+
T Consensus 198 ~lK~L~l~~CG 208 (505)
T KOG3207|consen 198 HLKQLVLNSCG 208 (505)
T ss_pred hhheEEeccCC
Confidence 55555555555
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=5.1e-07 Score=104.59 Aligned_cols=92 Identities=26% Similarity=0.400 Sum_probs=83.4
Q ss_pred CCCEEEccCCCCc-cccccccCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcC
Q 048779 23 SLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNS 100 (911)
Q Consensus 23 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~ 100 (911)
.++.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|+.++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999998 67999999999999999999998 889899999999999999987778899999999999999999
Q ss_pred CCcccccCcCCCCC
Q 048779 101 NTDLLKEMPVGIGK 114 (911)
Q Consensus 101 ~~~~~~~~p~~~~~ 114 (911)
+|.+.+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99977888887654
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.8e-06 Score=91.05 Aligned_cols=92 Identities=24% Similarity=0.440 Sum_probs=40.2
Q ss_pred ccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeecc--ccCcccccccccCCCccCcEEe
Q 048779 666 LKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYD--CKRLEALPKGLHNLKSLQELRI 743 (911)
Q Consensus 666 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~--c~~l~~~~~~l~~l~~L~~L~l 743 (911)
|+.|++++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++.. |..+..+|. +|+.|.+
T Consensus 74 LtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I 139 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSLSI 139 (426)
T ss_pred CcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhheec
Confidence 4444444444444444333 23555555555555555544 344444432 222333333 3444444
Q ss_pred CC-c-cCccccCCCCCCCCCceEEecccch
Q 048779 744 GG-E-LPSLEEDDGLPTDLRSLEIIFNTKI 771 (911)
Q Consensus 744 ~~-~-~~~l~~~~~~~~~L~~L~l~~c~~l 771 (911)
.+ . .........+|++|++|++++|..+
T Consensus 140 ~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 140 NSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred cccccccccccccccCCcccEEEecCCCcc
Confidence 32 1 1011111234566677777666644
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=2.5e-07 Score=102.33 Aligned_cols=115 Identities=29% Similarity=0.395 Sum_probs=81.9
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLK 82 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 82 (911)
+++..|.+.. .-..+..+++|+.|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++ +.+.
T Consensus 77 l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~ 153 (414)
T KOG0531|consen 77 LNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLIS 153 (414)
T ss_pred hccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccch
Confidence 3456666652 34446777888888888888888765577888888888888888888 5677788888888888 4455
Q ss_pred cchhhhhccCcccEEEcCCCcccccCcCC-CCCcccccccc
Q 048779 83 KLCADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLC 122 (911)
Q Consensus 83 ~lp~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~ 122 (911)
.+ ..+..++.|+.+++++|. +..+... ...+.+++.+.
T Consensus 154 ~~-~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 154 DI-SGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELD 192 (414)
T ss_pred hc-cCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHh
Confidence 55 445668888888888888 5555443 35555555553
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.8e-07 Score=94.62 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=75.6
Q ss_pred cccCCCCCCEEEccCCCCccc---cccccCCCCCCeEEccCCCCCcCChh--hhcCCCccEEecCCccccc-cchhhhhc
Q 048779 17 KLFKLQSLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGTEIRTLPES--VNKLYNLHTLLLVGCRRLK-KLCADMGN 90 (911)
Q Consensus 17 ~~~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~--~~~L~~L~~L~l~~~~~~~-~lp~~i~~ 90 (911)
..+.+++++.|+|++|-+... -.....+++|+.|+++.|++...-++ -..+++|+.|.++.|.... .+-.-...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 558899999999999998754 34457899999999999988744332 2467899999999996543 33333567
Q ss_pred cCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 91 LIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 91 L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
.++|+.|++.+|..+..-.....-+..|++|+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 89999999999952332222333445555553
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.6e-08 Score=95.69 Aligned_cols=158 Identities=24% Similarity=0.257 Sum_probs=88.0
Q ss_pred CCCeEEccCCCCC--cCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccc
Q 048779 46 YLRHLNLSGTEIR--TLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCN 123 (911)
Q Consensus 46 ~L~~L~L~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~ 123 (911)
.|++|||++..|+ ++...++.+.+|+-|.+.+...-+.+...|++-.+|+.|+++.|.-+.+..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 4777777777766 443446777777777777754444555667777777777777765221111
Q ss_pred eeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCC-
Q 048779 124 FVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLK- 202 (911)
Q Consensus 124 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~- 202 (911)
..--+..++.|.+|+++||....- .+-..+.
T Consensus 252 --------------------------------------~~ll~~scs~L~~LNlsWc~l~~~----------~Vtv~V~h 283 (419)
T KOG2120|consen 252 --------------------------------------LQLLLSSCSRLDELNLSWCFLFTE----------KVTVAVAH 283 (419)
T ss_pred --------------------------------------HHHHHHhhhhHhhcCchHhhccch----------hhhHHHhh
Confidence 111156667778888888775210 0001111
Q ss_pred CCCCccEEEEeeeCCCCCCCCcC--CCCCCcccEEEEeCCCCCCC--CCCCCCcCcccceecccccc
Q 048779 203 PHKNLEQFYICGYGGTKFPTWLG--DSSFSNLVTLKFEDCGMCTA--LPSVGQLPSLKHLTVRGMSR 265 (911)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~p~~l~--~~~~~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~l~~~~~ 265 (911)
--++|+.|.++|+...-.-..+. ...+++|.+|+|++|..+.. +..+.+++.|++|.++.|..
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 12566677776664322111110 01356777777777665443 11455666666666666653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.1e-07 Score=92.29 Aligned_cols=178 Identities=17% Similarity=0.148 Sum_probs=113.5
Q ss_pred cceEEEcCCcchhh----hcccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccc
Q 048779 357 LCNLQINGCEELSV----SLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSH 432 (911)
Q Consensus 357 L~~L~l~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 432 (911)
|+.|++++...... .+..+.+|+.|.+.+..--......+.. =.+|+.++++.|.+++.. +.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk------------N~~L~~lnlsm~sG~t~n--~~ 252 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK------------NSNLVRLNLSMCSGFTEN--AL 252 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc------------cccceeeccccccccchh--HH
Confidence 55555554443222 3455555666666555544433333322 357788888888877655 24
Q ss_pred cchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccc---cccccccCCCCccEEEecCCCC
Q 048779 433 TELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLV---KLPQSLLSLSSLREIFIGGCNS 509 (911)
Q Consensus 433 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~c~~ 509 (911)
.-++.+++.|++|++++|.-.+.. ....+.++.++|+.|+++||...- .+..-...+|+|.+|++++|..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~-------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEK-------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchh-------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 557889999999999999655443 122233456899999999985421 2222345699999999999988
Q ss_pred ccc--cCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecC
Q 048779 510 LVS--FPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESC 556 (911)
Q Consensus 510 l~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 556 (911)
++. +.....++.|++|.++.|..+..---.-+ ...|+|.+|++.+|
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc
Confidence 765 22233488999999999986532111111 56788888888776
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=2e-07 Score=93.00 Aligned_cols=87 Identities=22% Similarity=0.201 Sum_probs=54.8
Q ss_pred cccCCCCCCEEEccCCCCc-----cccccccCCCCCCeEEccCCCC----CcCChhh-------hcCCCccEEecCCccc
Q 048779 17 KLFKLQSLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEI----RTLPESV-------NKLYNLHTLLLVGCRR 80 (911)
Q Consensus 17 ~~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~~~l----~~lp~~~-------~~L~~L~~L~l~~~~~ 80 (911)
.+..+..++.++|++|.+. .+-..+.+.++||..++++..- .++|+.+ -..++|+.||||.|..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3455677888888888875 2445566777888888876521 2555432 3455777777777643
Q ss_pred cccch----hhhhccCcccEEEcCCCc
Q 048779 81 LKKLC----ADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 81 ~~~lp----~~i~~L~~L~~L~L~~~~ 103 (911)
-..-+ +-|.+++.|++|+|.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 32222 235567777777777777
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.4e-06 Score=59.46 Aligned_cols=38 Identities=32% Similarity=0.533 Sum_probs=23.5
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL 60 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l 60 (911)
+|++|++++|+|+.+|..+++|++|++|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666665566666666666666666655
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=5.9e-07 Score=77.05 Aligned_cols=107 Identities=25% Similarity=0.261 Sum_probs=83.3
Q ss_pred eeeccCCcccccccc---cccCCCCCCEEEccCCCCcccccccc-CCCCCCeEEccCCCCCcCChhhhcCCCccEEecCC
Q 048779 2 LLNSRHGYLAHSILP---KLFKLQSLRVFSLRGYRISELPDSVG-DLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVG 77 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~ 77 (911)
.+|||.+++- -++. .+.+..+|+..+|++|.+..+|..|. ..+-.++|++++|.|.++|..+..++.|+.|+++.
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3677777664 2333 33566678888999999988887774 45588899999999999998888899999999998
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcCC
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVG 111 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~ 111 (911)
+.+...|..|..|.+|-.||..+|. ...+|.+
T Consensus 110 -N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 110 -NPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred -CccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 5677778888889999999888888 6677765
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.03 E-value=4.3e-07 Score=90.74 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=130.0
Q ss_pred eeeccCCccccccc----ccccCCCCCCEEEccCCCC----cccc-------ccccCCCCCCeEEccCCCCC-cCC----
Q 048779 2 LLNSRHGYLAHSIL----PKLFKLQSLRVFSLRGYRI----SELP-------DSVGDLRYLRHLNLSGTEIR-TLP---- 61 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l----~~lp-------~~~~~l~~L~~L~L~~~~l~-~lp---- 61 (911)
.++||+|.+...-. +.+.+.++|+..++++--. .++| .++..+++|++||||.|.+. .-+
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 58999999876433 3346667889988886532 2344 44667889999999999877 222
Q ss_pred hhhhcCCCccEEecCCccccccchhh-------------hhccCcccEEEcCCCcccccCcCCCCCccccccccceeccC
Q 048779 62 ESVNKLYNLHTLLLVGCRRLKKLCAD-------------MGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGK 128 (911)
Q Consensus 62 ~~~~~L~~L~~L~l~~~~~~~~lp~~-------------i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~ 128 (911)
+-+.+.+.|++|.|.+|-.-..--.. +++-++||++...+|. +..-+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga------------------ 174 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGA------------------ 174 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccH------------------
Confidence 33688999999999998432111111 2334567777777766 333221
Q ss_pred CCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCcc
Q 048779 129 DSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLE 208 (911)
Q Consensus 129 ~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 208 (911)
......+...+.|+.+.+..|++. ..........+..+++|+
T Consensus 175 -------------------------------~~~A~~~~~~~~leevr~~qN~I~-------~eG~~al~eal~~~~~Le 216 (382)
T KOG1909|consen 175 -------------------------------TALAEAFQSHPTLEEVRLSQNGIR-------PEGVTALAEALEHCPHLE 216 (382)
T ss_pred -------------------------------HHHHHHHHhccccceEEEeccccc-------CchhHHHHHHHHhCCcce
Confidence 111122334455555555554441 000122334556667777
Q ss_pred EEEEeeeCCCC-----CCCCcCCCCCCcccEEEEeCCCCCCC----CC-CC-CCcCcccceeccccccccccCccccCCC
Q 048779 209 QFYICGYGGTK-----FPTWLGDSSFSNLVTLKFEDCGMCTA----LP-SV-GQLPSLKHLTVRGMSRVKRLGSEFYGND 277 (911)
Q Consensus 209 ~L~l~~~~~~~-----~p~~l~~~~~~~L~~L~L~~~~~~~~----l~-~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 277 (911)
.|++..|.++. +...+ ..++.|+.|++.+|..... +. .+ ...|+|+.|.+.+|....+-.......
T Consensus 217 vLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~- 293 (382)
T KOG1909|consen 217 VLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC- 293 (382)
T ss_pred eeecccchhhhHHHHHHHHHh--cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-
Confidence 77777766542 11111 1246777777777764221 11 11 235777777777775322211110000
Q ss_pred CCCCCCCcceEEeccCc
Q 048779 278 SPIPFPCLETLRFEDMQ 294 (911)
Q Consensus 278 ~~~~~~~L~~L~l~~~~ 294 (911)
....|.|+.|.|.++.
T Consensus 294 -~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 294 -MAEKPDLEKLNLNGNR 309 (382)
T ss_pred -HhcchhhHHhcCCccc
Confidence 1225677777777754
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=55.83 Aligned_cols=40 Identities=33% Similarity=0.495 Sum_probs=27.9
Q ss_pred CCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccch
Q 048779 45 RYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLC 85 (911)
Q Consensus 45 ~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp 85 (911)
++|++|++++|+|+++|..+++|++|+.|++++| .+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4678888888888888766788888888888885 455543
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=6.6e-06 Score=91.15 Aligned_cols=98 Identities=28% Similarity=0.358 Sum_probs=83.6
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.|++..|+|.. +...+..+++|++|++++|.|+.+.. +..++.|+.|++++|.|+.+ ..+..++.|+.+++++| .+
T Consensus 99 ~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n-~i 174 (414)
T KOG0531|consen 99 ALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI-SGLESLKSLKLLDLSYN-RI 174 (414)
T ss_pred eeeccccchhh-cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc-cCCccchhhhcccCCcc-hh
Confidence 68899999984 44447889999999999999999865 78888899999999999988 56777999999999994 56
Q ss_pred ccchhh-hhccCcccEEEcCCCc
Q 048779 82 KKLCAD-MGNLIKLHHLNNSNTD 103 (911)
Q Consensus 82 ~~lp~~-i~~L~~L~~L~L~~~~ 103 (911)
..+... ...+.+++.+++.+|.
T Consensus 175 ~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 175 VDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hhhhhhhhhhccchHHHhccCCc
Confidence 666443 6889999999999998
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.66 E-value=3.6e-06 Score=91.87 Aligned_cols=95 Identities=24% Similarity=0.252 Sum_probs=56.3
Q ss_pred eccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCccccc
Q 048779 4 NSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGCRRLK 82 (911)
Q Consensus 4 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~ 82 (911)
+.++|.+. ..-.++.-++.++.|+|++|+++..- .+..+++|++|||++|.+..+|.. -..+ +|+.|.+++ |.++
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~ 245 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALT 245 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecc-cHHH
Confidence 45566554 45555666666666666666666543 456666666666666666666532 1222 266666666 3345
Q ss_pred cchhhhhccCcccEEEcCCCc
Q 048779 83 KLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 83 ~lp~~i~~L~~L~~L~L~~~~ 103 (911)
.+ .+|.+|++|+.||+++|-
T Consensus 246 tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 246 TL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hh-hhHHhhhhhhccchhHhh
Confidence 54 456666666666666665
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=5.6e-05 Score=70.02 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=87.1
Q ss_pred eeccCCcccccccccc-cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhh-hcCCCccEEecCCccc
Q 048779 3 LNSRHGYLAHSILPKL-FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESV-NKLYNLHTLLLVGCRR 80 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~-~~L~~L~~L~l~~~~~ 80 (911)
+||.+.++... ..+ .-..+...++|++|++..++. |..+++|.+|.+.+|+|+.+...+ .-+++|..|.+.+|+
T Consensus 24 ~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs- 99 (233)
T KOG1644|consen 24 LDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS- 99 (233)
T ss_pred cccccccccch--hhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-
Confidence 56666555432 122 223367789999999988765 889999999999999999996555 446789999999954
Q ss_pred cccch--hhhhccCcccEEEcCCCcccccCcC----CCCCccccccccceecc
Q 048779 81 LKKLC--ADMGNLIKLHHLNNSNTDLLKEMPV----GIGKLTCLQTLCNFVVG 127 (911)
Q Consensus 81 ~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~----~~~~L~~L~~L~~~~~~ 127 (911)
+..+. .-...+++|++|.+-+|. ....+. -+.++++|+.|+...+.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 44442 336788999999999998 444443 27889999999765543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=5e-06 Score=90.83 Aligned_cols=103 Identities=23% Similarity=0.211 Sum_probs=72.3
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccc-cCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSV-GDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~ 79 (911)
+.||||+|+++. +. .+.++++|+.|||+.|.+..+|.-- ..++ |..|.+++|.++++ ..+.+|++|+.||+++|
T Consensus 190 e~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN- 264 (1096)
T KOG1859|consen 190 ESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYN- 264 (1096)
T ss_pred hhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHh-
Confidence 357888888874 23 6788888888888888888776522 2333 88888888888877 67888888888888884
Q ss_pred ccccch--hhhhccCcccEEEcCCCcccccCc
Q 048779 80 RLKKLC--ADMGNLIKLHHLNNSNTDLLKEMP 109 (911)
Q Consensus 80 ~~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p 109 (911)
.+.... .-+..|..|+.|+|.||. +..-|
T Consensus 265 ll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 265 LLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred hhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 332221 235677788888888887 55444
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=1.7e-05 Score=77.47 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=17.6
Q ss_pred CCCCCCeEEccCCCCC---cCChhhhcCCCccEEecCCc
Q 048779 43 DLRYLRHLNLSGTEIR---TLPESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 43 ~l~~L~~L~L~~~~l~---~lp~~~~~L~~L~~L~l~~~ 78 (911)
..++++.|||.+|.|+ ++-..+.+++.|++|+++.|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 3445555555555554 22222345555555555553
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00012 Score=67.81 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=33.9
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccc-cCCCCCCeEEccCCCCCcCC--hhhhcCCCccEEecCC
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSV-GDLRYLRHLNLSGTEIRTLP--ESVNKLYNLHTLLLVG 77 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~L~~~~l~~lp--~~~~~L~~L~~L~l~~ 77 (911)
+||+.|.+.. ...|..++.|.+|.|.+|.|+.|...+ .-+++|.+|.|.+|.|.++- ..+..+++|+.|.+-+
T Consensus 47 iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 47 IDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 4555554432 334455555555555555555552222 23344555555555444332 2244455555555554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=1.2e-05 Score=69.23 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=74.1
Q ss_pred eeccCCcccccccccc-cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 3 LNSRHGYLAHSILPKL-FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.+|++|.+. .+|+.| ...+.+++|+|++|.|+++|..+..++.||.|+++.|.+...|..|..|.+|-.||.-+| ..
T Consensus 58 i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~ 135 (177)
T KOG4579|consen 58 ISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-AR 135 (177)
T ss_pred Eecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-cc
Confidence 589999997 788888 777899999999999999999999999999999999999999999888999999999984 45
Q ss_pred ccchhh
Q 048779 82 KKLCAD 87 (911)
Q Consensus 82 ~~lp~~ 87 (911)
..+|-.
T Consensus 136 ~eid~d 141 (177)
T KOG4579|consen 136 AEIDVD 141 (177)
T ss_pred ccCcHH
Confidence 566643
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=1.3e-05 Score=91.79 Aligned_cols=117 Identities=25% Similarity=0.338 Sum_probs=65.9
Q ss_pred hhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEec-ccccccc----ccccCCCCccEEEecCCCCc
Q 048779 436 LQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYIC-EGLVKLP----QSLLSLSSLREIFIGGCNSL 510 (911)
Q Consensus 436 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~c~~l 510 (911)
...+++|+.+.+.+|..+.... +..+....+.|+.|++++| ......+ .....+++|+.+++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 4457888888888887766532 1111122377777777763 2222222 12234667777777776654
Q ss_pred cccCC--C-CCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCC
Q 048779 511 VSFPE--V-ALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSL 559 (911)
Q Consensus 511 ~~~~~--~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 559 (911)
++..- . ..+++|++|.+.+|..+++.....+...+++|++|++++|..+
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 43321 1 1256677777666766555444444466677777777776655
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=7.7e-06 Score=93.74 Aligned_cols=86 Identities=23% Similarity=0.396 Sum_probs=43.5
Q ss_pred cCcceEEEEecccccc--ccccccCCCCccEEEecCC-CCccccCC-----CCCCCCCcEEEeccCCCCCccchhhhcCC
Q 048779 473 CRLEYLRLYICEGLVK--LPQSLLSLSSLREIFIGGC-NSLVSFPE-----VALPSKLKKIEISECDALKSLPEAWMCDT 544 (911)
Q Consensus 473 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~c-~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 544 (911)
+.|+.+.+.+|..+.. +-.....++.|++|++++| ......+. ...+++|+.++++.|..+.+....+....
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 6777777777766554 3344555677777777663 22222111 11245555555555554444443333333
Q ss_pred CCCccEEEEecCCC
Q 048779 545 NSSLEILYIESCHS 558 (911)
Q Consensus 545 ~~~L~~L~l~~c~~ 558 (911)
+++|+.|.+.+|..
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 45555555444443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=3.7e-05 Score=75.21 Aligned_cols=78 Identities=26% Similarity=0.218 Sum_probs=49.7
Q ss_pred CCCCCCeEEccCCCCCcCCh--hh-hcCCCccEEecCCcccc--ccchhhhhccCcccEEEcCCCcccccCcCCC-CCcc
Q 048779 43 DLRYLRHLNLSGTEIRTLPE--SV-NKLYNLHTLLLVGCRRL--KKLCADMGNLIKLHHLNNSNTDLLKEMPVGI-GKLT 116 (911)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~--~~-~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~-~~L~ 116 (911)
....++.|.+.++.|...-. .| ...+.++.|||.+|... .++-.....|+.|+.|+++.|. +....... ..++
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCccccc
Confidence 44456678888888775532 24 34688999999996443 2343445789999999999988 32221112 2345
Q ss_pred ccccc
Q 048779 117 CLQTL 121 (911)
Q Consensus 117 ~L~~L 121 (911)
+|+.|
T Consensus 122 nl~~l 126 (418)
T KOG2982|consen 122 NLRVL 126 (418)
T ss_pred ceEEE
Confidence 66665
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00031 Score=68.10 Aligned_cols=89 Identities=22% Similarity=0.205 Sum_probs=56.7
Q ss_pred cCCCCCCEEEccCCCCc-----cccccccCCCCCCeEEccCCCCC----cCCh-------hhhcCCCccEEecCCccccc
Q 048779 19 FKLQSLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIR----TLPE-------SVNKLYNLHTLLLVGCRRLK 82 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~~~l~----~lp~-------~~~~L~~L~~L~l~~~~~~~ 82 (911)
..+..++.++|+||.|. .+...+.+-++|++.+++.-... ++|+ ++-++++|+..+||.|....
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44667778888888876 23445566777888877754222 3333 34467788888888765443
Q ss_pred cch----hhhhccCcccEEEcCCCcccccC
Q 048779 83 KLC----ADMGNLIKLHHLNNSNTDLLKEM 108 (911)
Q Consensus 83 ~lp----~~i~~L~~L~~L~L~~~~~~~~~ 108 (911)
..| ..|++-+.|.+|.|++|. ++-+
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 333 235667778888888877 4433
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00041 Score=80.34 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=45.9
Q ss_pred CCCCCeEEccCCC-CCcC-Chhh-hcCCCccEEecCCcccc--ccchhhhhccCcccEEEcCCCcccccCcCCCCCcccc
Q 048779 44 LRYLRHLNLSGTE-IRTL-PESV-NKLYNLHTLLLVGCRRL--KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCL 118 (911)
Q Consensus 44 l~~L~~L~L~~~~-l~~l-p~~~-~~L~~L~~L~l~~~~~~--~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L 118 (911)
-.+|++||+++.. +..- |..+ ..|+.|+.|.+++ ... ++.-....++++|+.||+++++ +..+ .++++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence 3567788887753 2221 2333 3467888888777 222 2222334567788888888877 5554 457777777
Q ss_pred cccc
Q 048779 119 QTLC 122 (911)
Q Consensus 119 ~~L~ 122 (911)
+.|.
T Consensus 198 q~L~ 201 (699)
T KOG3665|consen 198 QVLS 201 (699)
T ss_pred HHHh
Confidence 7774
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.00037 Score=80.64 Aligned_cols=83 Identities=29% Similarity=0.422 Sum_probs=40.6
Q ss_pred cCCCCCCEEEccCCCCc--cccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccc--hhhhhccCcc
Q 048779 19 FKLQSLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKL--CADMGNLIKL 94 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~l--p~~i~~L~~L 94 (911)
..+|.|++|.+.+-.+. ++.....++++|+.||+|+++++.+ .++++|++|++|.+.+ -....- -..+..|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCC
Confidence 44555555555554432 2223334555555555555555555 4555555555555554 222111 1234455555
Q ss_pred cEEEcCCCc
Q 048779 95 HHLNNSNTD 103 (911)
Q Consensus 95 ~~L~L~~~~ 103 (911)
+.||+|...
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 555555443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.91 E-value=0.00011 Score=71.02 Aligned_cols=88 Identities=20% Similarity=0.186 Sum_probs=63.8
Q ss_pred ccCCCCCCeEEccCCCCC-----cCChhhhcCCCccEEecCCcc---ccccch-------hhhhccCcccEEEcCCCccc
Q 048779 41 VGDLRYLRHLNLSGTEIR-----TLPESVNKLYNLHTLLLVGCR---RLKKLC-------ADMGNLIKLHHLNNSNTDLL 105 (911)
Q Consensus 41 ~~~l~~L~~L~L~~~~l~-----~lp~~~~~L~~L~~L~l~~~~---~~~~lp-------~~i~~L~~L~~L~L~~~~~~ 105 (911)
+..+..+..+|||+|.|. .+...|.+-.+|++.+++.-. .-..+| ..+.++++|+..+||+|.+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 456888999999999887 344557788899999988521 112333 34568999999999999976
Q ss_pred ccCcCC----CCCccccccccceeccC
Q 048779 106 KEMPVG----IGKLTCLQTLCNFVVGK 128 (911)
Q Consensus 106 ~~~p~~----~~~L~~L~~L~~~~~~~ 128 (911)
...|.. |++-+.|.+|.....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 666653 67778888886554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=8.2e-05 Score=72.20 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=81.3
Q ss_pred cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccch--hhhhccCcccE
Q 048779 19 FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLC--ADMGNLIKLHH 96 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~ 96 (911)
..+.+.+-|++-||.++.|.- ..+|+.|++|.||-|.|+.+ ..+..+++|+.|.|..| .+..+- ..+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 345677888999999988743 66899999999999999998 67899999999999984 455553 34678999999
Q ss_pred EEcCCCcccccCcCC-----CCCcccccccccee
Q 048779 97 LNNSNTDLLKEMPVG-----IGKLTCLQTLCNFV 125 (911)
Q Consensus 97 L~L~~~~~~~~~p~~-----~~~L~~L~~L~~~~ 125 (911)
|+|..|...+.-+.. +.-|++|++|+...
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 999998866665543 56788888886543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.09 E-value=0.0042 Score=60.67 Aligned_cols=105 Identities=24% Similarity=0.257 Sum_probs=58.2
Q ss_pred cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCC--CCC-cCChhhhcCCCccEEecCCccccccch--hhhhccCc
Q 048779 19 FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGT--EIR-TLPESVNKLYNLHTLLLVGCRRLKKLC--ADMGNLIK 93 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~--~l~-~lp~~~~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~ 93 (911)
.....|+.|++.+..++.+-. +-.|++|+.|.++.| .+. .++.....+++|++|++++| .++.+. ....++.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 444566666666666555432 456677777777777 333 44333444577777777774 233221 22455666
Q ss_pred ccEEEcCCCcccccCcCC----CCCccccccccceec
Q 048779 94 LHHLNNSNTDLLKEMPVG----IGKLTCLQTLCNFVV 126 (911)
Q Consensus 94 L~~L~L~~~~~~~~~p~~----~~~L~~L~~L~~~~~ 126 (911)
|..|++..|. ...+-+. +.-+++|+.|+...+
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 7777777776 3333221 444566666644333
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0024 Score=36.80 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=8.2
Q ss_pred CCeEEccCCCCCcCChhh
Q 048779 47 LRHLNLSGTEIRTLPESV 64 (911)
Q Consensus 47 L~~L~L~~~~l~~lp~~~ 64 (911)
||+||+++|+|+.+|+.|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444333
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.91 E-value=0.0065 Score=59.41 Aligned_cols=97 Identities=28% Similarity=0.322 Sum_probs=71.6
Q ss_pred cccccCCCCCCEEEccCCC--Cc-cccccccCCCCCCeEEccCCCCCcCC--hhhhcCCCccEEecCCccccc--cch-h
Q 048779 15 LPKLFKLQSLRVFSLRGYR--IS-ELPDSVGDLRYLRHLNLSGTEIRTLP--ESVNKLYNLHTLLLVGCRRLK--KLC-A 86 (911)
Q Consensus 15 ~~~~~~l~~L~~L~L~~n~--l~-~lp~~~~~l~~L~~L~L~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~--~lp-~ 86 (911)
...|..+++|+.|.++.|. ++ .++-....+++|++|.+++|+|..+- ..+..+.+|..||+.+|.... .-- .
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~ 137 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK 137 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH
Confidence 4567889999999999994 44 44444556799999999999887542 347788999999999985433 222 2
Q ss_pred hhhccCcccEEEcCCCcccccCcCCC
Q 048779 87 DMGNLIKLHHLNNSNTDLLKEMPVGI 112 (911)
Q Consensus 87 ~i~~L~~L~~L~L~~~~~~~~~p~~~ 112 (911)
.+.-+++|.+||-.... -...|...
T Consensus 138 vf~ll~~L~~LD~~dv~-~~Ea~~~~ 162 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD-GEEAPEAD 162 (260)
T ss_pred HHHHhhhhccccccccC-Cccccccc
Confidence 35668999999988777 55566543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.011 Score=34.05 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=15.0
Q ss_pred CCCEEEccCCCCccccccccC
Q 048779 23 SLRVFSLRGYRISELPDSVGD 43 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~ 43 (911)
+|++|++++|+++.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467778888877777766654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.72 E-value=0.018 Score=30.58 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=6.8
Q ss_pred CCCeEEccCCCCCcCC
Q 048779 46 YLRHLNLSGTEIRTLP 61 (911)
Q Consensus 46 ~L~~L~L~~~~l~~lp 61 (911)
+||.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666665555544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.48 E-value=0.17 Score=45.54 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=14.0
Q ss_pred ccccCCCcceEEeccCccccccCCC-CCCCCCccEEeec
Q 048779 683 GLHNLRQLLEIKIWWCGNLVTFPEG-GLPCAKLTRLEIY 720 (911)
Q Consensus 683 ~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~ 720 (911)
.+.++++|+.+.+.+ .+..++.. +..+++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEET
T ss_pred hcccccccccccccc--cccccceeeeeccccccccccc
Confidence 344455555555543 14444432 2334455555553
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.0047 Score=60.39 Aligned_cols=94 Identities=28% Similarity=0.213 Sum_probs=72.2
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC--hhhhcCCCccEEecCCccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP--ESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~~~~L~~L~~L~l~~~~~ 80 (911)
||.=++.+++. .-..+|+.|++|.|+=|.|+.+.. +..+++|+.|.|..|.|.++. ..+.++++|+.|=|..|..
T Consensus 24 LNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 24 LNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hcccCCCccHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 45555655532 223899999999999999999854 889999999999999998774 3478999999999998755
Q ss_pred cccchh-----hhhccCcccEEEc
Q 048779 81 LKKLCA-----DMGNLIKLHHLNN 99 (911)
Q Consensus 81 ~~~lp~-----~i~~L~~L~~L~L 99 (911)
...-+. .+.-|++|+.||=
T Consensus 101 c~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 101 CGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccccchhHHHHHHHHcccchhccC
Confidence 444432 3566888888863
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.68 E-value=0.0016 Score=61.84 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=74.9
Q ss_pred cccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcc
Q 048779 15 LPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKL 94 (911)
Q Consensus 15 ~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L 94 (911)
-.++...+..++||++.|++..+-..|+-++.|..||++.|.+..+|..+..+..++.+++.. +.....|..+++++++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCc
Confidence 345566678899999999988877778888899999999999988998899898888888887 5577888889999999
Q ss_pred cEEEcCCCcc
Q 048779 95 HHLNNSNTDL 104 (911)
Q Consensus 95 ~~L~L~~~~~ 104 (911)
+++++.++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 9999888873
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.54 E-value=0.31 Score=43.72 Aligned_cols=100 Identities=11% Similarity=0.298 Sum_probs=60.1
Q ss_pred cccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCccccccch-hhhhcc
Q 048779 15 LPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCRRLKKLC-ADMGNL 91 (911)
Q Consensus 15 ~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~lp-~~i~~L 91 (911)
...|..+.+|+.+.+.. .+..+ ..+|..+++|+.+.+..+ +..++. .|.++++++.+.+.. ....++ ..+..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccc
Confidence 34567888999999875 57777 567888889999999875 777764 488888899999975 344554 346779
Q ss_pred CcccEEEcCCCcccccCcCC-CCCccccccc
Q 048779 92 IKLHHLNNSNTDLLKEMPVG-IGKLTCLQTL 121 (911)
Q Consensus 92 ~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L 121 (911)
++|+.+++..+ +..++.. +... +++.+
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 99999998764 4455553 5555 66666
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.1 Score=27.78 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=10.9
Q ss_pred CCCCEEEccCCCCcccc
Q 048779 22 QSLRVFSLRGYRISELP 38 (911)
Q Consensus 22 ~~L~~L~L~~n~l~~lp 38 (911)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999988776
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.18 E-value=0.004 Score=59.21 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=75.6
Q ss_pred Ccccc-ccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCcccccCcCCC
Q 048779 34 ISELP-DSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGI 112 (911)
Q Consensus 34 l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~ 112 (911)
++++| ..+...+.-++||++.|++..+-..|+.++.|..||++- +.+..+|..++.+..++.+++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34554 446788899999999999888877799999999999998 6788999999999999999998888 88999999
Q ss_pred CCccccccccc
Q 048779 113 GKLTCLQTLCN 123 (911)
Q Consensus 113 ~~L~~L~~L~~ 123 (911)
+++++++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999988853
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.023 Score=53.31 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=29.5
Q ss_pred cccEEEEeCCCCCC-CCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCccccc
Q 048779 231 NLVTLKFEDCGMCT-ALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWED 298 (911)
Q Consensus 231 ~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 298 (911)
.++.++-+++.+.. .+..+..++.++.|.+.+|.++.+...+..+.. +++|+.|+|++|+.+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~----~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL----APSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhccc----ccchheeeccCCCeech
Confidence 44444444444321 122444555555555555555444443333322 45555555555554443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.036 Score=52.02 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=49.8
Q ss_pred cccEEEecccccccccccccccCCCcceEEeccCccccccCCC--CCCCCCccEEeeccccCccccc-ccccCCCccCcE
Q 048779 665 SLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEG--GLPCAKLTRLEIYDCKRLEALP-KGLHNLKSLQEL 741 (911)
Q Consensus 665 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L 741 (911)
.++.++-+++....+--..+.++++++.|.+.+|..+....-. ....++|+.|+|++|+.+++.. ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3445555555444443334566777777778777766553221 1246688888888888887642 245666777777
Q ss_pred EeCC
Q 048779 742 RIGG 745 (911)
Q Consensus 742 ~l~~ 745 (911)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.60 E-value=0.24 Score=29.80 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=14.2
Q ss_pred CCCCCeEEccCCCCCcCChh
Q 048779 44 LRYLRHLNLSGTEIRTLPES 63 (911)
Q Consensus 44 l~~L~~L~L~~~~l~~lp~~ 63 (911)
+++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.60 E-value=0.24 Score=29.80 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=14.2
Q ss_pred CCCCCeEEccCCCCCcCChh
Q 048779 44 LRYLRHLNLSGTEIRTLPES 63 (911)
Q Consensus 44 l~~L~~L~L~~~~l~~lp~~ 63 (911)
+++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.47 E-value=1 Score=27.03 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCcccccc
Q 048779 21 LQSLRVFSLRGYRISELPDS 40 (911)
Q Consensus 21 l~~L~~L~L~~n~l~~lp~~ 40 (911)
+++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999754
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.47 E-value=1 Score=27.03 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCcccccc
Q 048779 21 LQSLRVFSLRGYRISELPDS 40 (911)
Q Consensus 21 l~~L~~L~L~~n~l~~lp~~ 40 (911)
+++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46899999999999999754
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.18 E-value=1.7 Score=26.11 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=7.3
Q ss_pred CCcceEecccCCCcc
Q 048779 844 QNLTELRLHDCPKLK 858 (911)
Q Consensus 844 ~~L~~L~l~~c~~l~ 858 (911)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555554444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.35 E-value=1.8 Score=25.93 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=12.4
Q ss_pred CCCeEEccCCCCCcCCh
Q 048779 46 YLRHLNLSGTEIRTLPE 62 (911)
Q Consensus 46 ~L~~L~L~~~~l~~lp~ 62 (911)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777765
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.69 E-value=2.5 Score=25.44 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=12.0
Q ss_pred CCCCCeEEccCCCCCcC
Q 048779 44 LRYLRHLNLSGTEIRTL 60 (911)
Q Consensus 44 l~~L~~L~L~~~~l~~l 60 (911)
+++|++|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777788877777655
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.70 E-value=4.1 Score=23.77 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=3.6
Q ss_pred CCCeEEccCCC
Q 048779 46 YLRHLNLSGTE 56 (911)
Q Consensus 46 ~L~~L~L~~~~ 56 (911)
+|++|+|++|+
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 33444444443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.83 E-value=5.4 Score=43.96 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=53.4
Q ss_pred cCCCCCCeEEccCCCCCcCC--hh-hhcCCCccEEecCCccccccchhhhhc--cCcccEEEcCCCcccccCcCC---CC
Q 048779 42 GDLRYLRHLNLSGTEIRTLP--ES-VNKLYNLHTLLLVGCRRLKKLCADMGN--LIKLHHLNNSNTDLLKEMPVG---IG 113 (911)
Q Consensus 42 ~~l~~L~~L~L~~~~l~~lp--~~-~~~L~~L~~L~l~~~~~~~~lp~~i~~--L~~L~~L~L~~~~~~~~~p~~---~~ 113 (911)
.+.+.+..+.|++|++..+. +. -..-++|..|+|++|......-.++.+ ...|++|-+.||.+.+..-.- +.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 35667788888888777662 22 345688999999986222222234554 456888999999865544321 22
Q ss_pred ----Cccccccccceecc
Q 048779 114 ----KLTCLQTLCNFVVG 127 (911)
Q Consensus 114 ----~L~~L~~L~~~~~~ 127 (911)
.+++|..|+...+.
T Consensus 295 ~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHhcchheeecCcccC
Confidence 56677777655543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.73 E-value=12 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=8.9
Q ss_pred CCCCeEEccCCCCC
Q 048779 45 RYLRHLNLSGTEIR 58 (911)
Q Consensus 45 ~~L~~L~L~~~~l~ 58 (911)
+.|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666777666664
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.93 E-value=2.2 Score=47.69 Aligned_cols=114 Identities=19% Similarity=0.073 Sum_probs=67.1
Q ss_pred cccccCCCCCCEEEccCCCCcc-----cccccc----CCCCCCeEEccCCCCCcC-----ChhhhcCCC-ccEEecCCcc
Q 048779 15 LPKLFKLQSLRVFSLRGYRISE-----LPDSVG----DLRYLRHLNLSGTEIRTL-----PESVNKLYN-LHTLLLVGCR 79 (911)
Q Consensus 15 ~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~----~l~~L~~L~L~~~~l~~l-----p~~~~~L~~-L~~L~l~~~~ 79 (911)
+..+.....++.++++.|.+.. ++..+. ...++++|.+++|.++.- ...+...+. ++.|+++.|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 3445456788888888887631 233333 477888888888877622 122455555 6668888754
Q ss_pred cccc----chhhhhcc-CcccEEEcCCCcccccCcC----CCCCccccccccceeccC
Q 048779 80 RLKK----LCADMGNL-IKLHHLNNSNTDLLKEMPV----GIGKLTCLQTLCNFVVGK 128 (911)
Q Consensus 80 ~~~~----lp~~i~~L-~~L~~L~L~~~~~~~~~p~----~~~~L~~L~~L~~~~~~~ 128 (911)
.-+. +...+..+ ..++++++++|.+...-.. .+.....++.+..+....
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3222 23344555 6778888888884333222 245555666665544433
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.71 E-value=80 Score=21.79 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=16.8
Q ss_pred CCcceEecccCCCccccCCCCCcccccceeecC
Q 048779 844 QNLTELRLHDCPKLKYFPEKGLPSSLLQLQIWG 876 (911)
Q Consensus 844 ~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~ 876 (911)
+++++|.+.+. --+.+....+|++|++|.++.
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 45566666321 112333445677777777653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.91 E-value=63 Score=36.11 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=53.0
Q ss_pred cCCCCCCEEEccCCCCccc---cccccCCCCCCeEEccCC--CCCcCChhhhc--CCCccEEecCCccccccc--hh-hh
Q 048779 19 FKLQSLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGT--EIRTLPESVNK--LYNLHTLLLVGCRRLKKL--CA-DM 88 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~--~l~~lp~~~~~--L~~L~~L~l~~~~~~~~l--p~-~i 88 (911)
.+.+.+..++|++|++-++ ...-..-++|+.|+|++| .+... .++.+ ...|+.|-+.||..-+.. ++ .+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 5567888999999997765 232356789999999999 55433 23333 346888999997544333 22 23
Q ss_pred h----ccCcccEEE
Q 048779 89 G----NLIKLHHLN 98 (911)
Q Consensus 89 ~----~L~~L~~L~ 98 (911)
. ..++|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 3 578888887
Done!