Query 048779
Match_columns 911
No_of_seqs 349 out of 3646
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 23:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-49 9.1E-54 474.6 34.9 674 23-902 51-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.3E-44 2.5E-48 427.4 30.6 650 1-772 53-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-39 1.3E-43 383.9 44.2 240 641-893 382-635 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-39 6.2E-44 386.5 35.3 117 1-122 7-127 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-36 1.3E-40 352.9 35.7 116 2-121 15-133 (606)
6 3t6q_A CD180 antigen; protein- 100.0 5.7E-36 2E-40 351.5 32.7 193 2-265 16-214 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.5E-35 8.7E-40 346.0 38.1 96 24-121 14-110 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-36 1.6E-40 352.1 31.8 122 1-123 35-160 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-32 1.1E-36 329.8 40.0 117 2-122 8-129 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-31 5.4E-36 323.8 39.7 95 25-122 7-103 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-32 2.1E-36 313.3 31.1 118 2-123 9-130 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 8.2E-32 2.8E-36 314.1 31.8 114 3-121 12-129 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 8.2E-32 2.8E-36 314.0 29.3 121 1-122 31-155 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-31 4.5E-36 310.5 27.4 462 1-558 29-509 (549)
15 4eco_A Uncharacterized protein 100.0 7.5E-32 2.5E-36 315.5 20.9 424 2-580 85-598 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-30 1.3E-34 295.8 31.0 115 1-121 3-120 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 7.2E-31 2.5E-35 311.1 24.1 422 2-580 327-838 (876)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-29 4.1E-34 300.3 31.0 119 2-122 56-179 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 2.8E-29 9.4E-34 297.5 22.7 373 8-537 435-843 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-28 5.8E-33 282.1 28.0 425 1-580 24-479 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-27 4.2E-32 283.0 35.6 110 8-122 41-154 (635)
22 4eco_A Uncharacterized protein 100.0 4.8E-29 1.6E-33 291.7 21.9 365 7-531 192-598 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-28 6.9E-33 283.7 24.4 444 1-580 34-508 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-26 3.7E-31 269.1 31.0 89 20-111 29-118 (562)
25 1jl5_A Outer protein YOPM; leu 99.9 6.2E-27 2.1E-31 261.2 21.8 264 21-366 10-288 (454)
26 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 3.9E-31 259.1 23.4 71 38-110 5-88 (454)
27 1o6v_A Internalin A; bacterial 99.9 2.4E-24 8E-29 243.1 28.1 98 19-122 43-140 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-24 1.1E-28 239.5 27.0 354 10-556 30-384 (457)
29 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.8E-29 245.8 23.5 116 2-121 14-134 (455)
30 1o6v_A Internalin A; bacterial 99.9 7.3E-24 2.5E-28 239.1 29.5 75 43-122 44-118 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-24 5.3E-29 242.1 20.4 219 1-292 45-263 (457)
32 3o6n_A APL1; leucine-rich repe 99.9 1E-23 3.5E-28 232.3 18.7 299 1-369 48-353 (390)
33 4fmz_A Internalin; leucine ric 99.9 1.3E-22 4.4E-27 219.9 22.8 100 16-121 38-137 (347)
34 2id5_A Lingo-1, leucine rich r 99.9 2E-22 6.9E-27 228.6 25.4 309 2-368 15-333 (477)
35 3v47_A TOLL-like receptor 5B a 99.9 1.4E-22 4.9E-27 228.6 23.3 130 640-796 275-405 (455)
36 3oja_B Anopheles plasmodium-re 99.9 8E-23 2.7E-27 237.8 19.1 298 1-368 54-358 (597)
37 2id5_A Lingo-1, leucine rich r 99.9 4.5E-22 1.5E-26 225.7 23.9 242 24-322 13-258 (477)
38 4fmz_A Internalin; leucine ric 99.9 8.1E-22 2.8E-26 213.6 24.2 301 496-878 43-344 (347)
39 3o6n_A APL1; leucine-rich repe 99.9 5.8E-22 2E-26 218.3 19.4 277 1-346 72-351 (390)
40 4fcg_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 211.9 15.9 191 20-270 79-270 (328)
41 3oja_B Anopheles plasmodium-re 99.9 2.3E-21 7.7E-26 225.5 19.4 277 1-346 78-357 (597)
42 1xku_A Decorin; proteoglycan, 99.9 1.3E-20 4.5E-25 202.2 21.8 243 23-326 32-276 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-20 5.4E-25 201.7 21.3 242 23-326 34-277 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-21 4.4E-26 207.7 12.3 121 2-122 54-180 (313)
45 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.6E-25 201.8 17.7 218 43-332 79-296 (328)
46 1xku_A Decorin; proteoglycan, 99.8 5.1E-20 1.8E-24 197.6 21.6 285 1-344 34-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 4.5E-20 1.5E-24 198.2 20.1 284 1-344 36-330 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-20 4.7E-25 199.7 10.3 222 1-267 79-305 (313)
49 3ogk_B Coronatine-insensitive 99.8 6.1E-21 2.1E-25 223.1 5.6 376 411-860 111-528 (592)
50 3ogk_B Coronatine-insensitive 99.8 8.6E-20 3E-24 213.3 14.2 113 436-557 188-304 (592)
51 2z80_A TOLL-like receptor 2, v 99.8 6.8E-19 2.3E-23 190.7 17.6 116 2-122 35-155 (353)
52 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-18 1.2E-22 196.1 23.8 135 205-368 161-297 (622)
53 2z66_A Variable lymphocyte rec 99.8 1.6E-18 5.5E-23 183.8 17.9 116 2-122 11-132 (306)
54 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.3E-23 194.6 17.9 238 2-322 47-289 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 1E-18 3.5E-23 196.1 17.1 116 2-122 58-177 (452)
56 1z7x_W Ribonuclease inhibitor; 99.8 5.8E-21 2E-25 215.9 -1.9 102 2-103 7-124 (461)
57 3zyi_A Leucine-rich repeat-con 99.8 5.6E-18 1.9E-22 190.1 21.3 239 23-345 55-301 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 9.7E-18 3.3E-22 187.4 22.3 238 23-345 44-290 (440)
59 2p1m_B Transport inhibitor res 99.8 4.9E-20 1.7E-24 215.6 2.0 153 640-796 314-491 (594)
60 2p1m_B Transport inhibitor res 99.8 1.5E-19 5E-24 211.6 6.0 202 282-506 129-347 (594)
61 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 183.2 14.0 121 1-122 31-156 (306)
62 2z80_A TOLL-like receptor 2, v 99.8 2.3E-18 8E-23 186.5 14.4 122 1-123 55-181 (353)
63 1ozn_A Reticulon 4 receptor; N 99.7 2.5E-17 8.7E-22 172.5 18.0 117 2-122 15-135 (285)
64 1z7x_W Ribonuclease inhibitor; 99.7 8.8E-20 3E-24 206.1 -1.2 332 411-796 27-408 (461)
65 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-17 5.9E-22 173.8 15.5 196 1-264 35-236 (285)
66 1wwl_A Monocyte differentiatio 99.7 1.4E-18 4.9E-23 184.3 6.9 84 20-103 93-184 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.7 5.3E-19 1.8E-23 188.1 3.3 267 2-332 14-282 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-16 6.2E-21 181.9 24.4 211 23-344 41-251 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-18 3.7E-23 185.7 4.9 240 1-300 37-279 (317)
70 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.4E-21 163.0 14.2 181 683-880 50-239 (239)
71 2o6q_A Variable lymphocyte rec 99.7 5.4E-16 1.8E-20 160.7 19.5 115 2-121 20-138 (270)
72 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4E-21 166.5 12.9 218 4-264 13-235 (276)
73 3oja_A Leucine-rich immune mol 99.7 1.6E-16 5.6E-21 178.9 13.4 149 640-794 120-270 (487)
74 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.9E-21 161.8 11.8 207 8-293 21-236 (239)
75 3rfs_A Internalin B, repeat mo 99.7 4.4E-16 1.5E-20 161.5 15.0 112 4-121 25-138 (272)
76 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 184.0 6.9 239 23-325 35-275 (487)
77 1p9a_G Platelet glycoprotein I 99.7 1E-15 3.4E-20 159.9 16.8 99 18-121 6-105 (290)
78 1h6u_A Internalin H; cell adhe 99.7 7.1E-16 2.4E-20 162.8 15.3 192 18-264 37-228 (308)
79 4ay9_X Follicle-stimulating ho 99.6 1.1E-15 3.8E-20 164.8 16.0 235 2-321 13-255 (350)
80 1p9a_G Platelet glycoprotein I 99.6 1.2E-15 4.2E-20 159.2 15.7 191 1-264 13-206 (290)
81 2o6q_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 154.7 17.0 119 1-121 40-162 (270)
82 2ast_B S-phase kinase-associat 99.6 3.5E-17 1.2E-21 176.2 1.1 248 1-332 50-312 (336)
83 2z62_A TOLL-like receptor 4, v 99.6 5.7E-15 1.9E-19 153.7 16.4 200 637-853 25-233 (276)
84 3rfs_A Internalin B, repeat mo 99.6 5.8E-15 2E-19 153.0 16.2 116 1-121 44-162 (272)
85 1h6u_A Internalin H; cell adhe 99.6 2.1E-15 7.3E-20 159.2 13.0 91 26-122 23-113 (308)
86 1wwl_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 166.1 6.6 198 663-879 94-308 (312)
87 3m19_A Variable lymphocyte rec 99.6 2.3E-14 7.9E-19 146.5 17.7 103 2-109 18-123 (251)
88 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.4E-20 159.7 9.3 222 2-264 68-305 (310)
89 4ay9_X Follicle-stimulating ho 99.6 6.3E-14 2.1E-18 151.0 20.8 58 501-562 13-70 (350)
90 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 141.6 15.1 119 1-121 38-160 (251)
91 1h6t_A Internalin B; cell adhe 99.5 8.6E-14 2.9E-18 145.4 14.4 182 4-264 30-211 (291)
92 4glp_A Monocyte differentiatio 99.5 4E-14 1.4E-18 149.9 11.1 202 665-879 92-306 (310)
93 3goz_A Leucine-rich repeat-con 99.5 2.7E-15 9.2E-20 162.7 1.7 108 1-109 1-125 (362)
94 2ca6_A RAN GTPase-activating p 99.5 1.7E-15 5.7E-20 166.2 -0.5 242 13-294 23-314 (386)
95 2ast_B S-phase kinase-associat 99.5 8.4E-15 2.9E-19 157.5 4.1 199 640-877 93-303 (336)
96 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.8E-18 136.5 12.2 127 1-128 35-164 (220)
97 3e6j_A Variable lymphocyte rec 99.5 2.3E-13 7.8E-18 136.6 13.0 124 1-126 43-169 (229)
98 2ca6_A RAN GTPase-activating p 99.5 3.7E-15 1.3E-19 163.5 -0.8 259 22-326 9-316 (386)
99 2je0_A Acidic leucine-rich nuc 99.5 1.3E-13 4.3E-18 128.3 9.7 120 1-123 20-147 (149)
100 1m9s_A Internalin B; cell inva 99.5 9.5E-14 3.2E-18 159.2 10.4 182 4-264 27-208 (605)
101 1h6t_A Internalin B; cell adhe 99.5 3.4E-13 1.2E-17 140.8 13.4 164 24-264 26-189 (291)
102 4ezg_A Putative uncharacterize 99.4 7.3E-14 2.5E-18 136.8 7.1 83 19-103 41-123 (197)
103 3cvr_A Invasion plasmid antige 99.4 5.8E-13 2E-17 150.8 15.2 86 23-121 60-145 (571)
104 2ell_A Acidic leucine-rich nuc 99.4 2.4E-13 8.1E-18 129.4 10.2 124 1-127 27-158 (168)
105 1xeu_A Internalin C; cellular 99.4 1.8E-13 6E-18 140.6 9.7 57 204-264 127-183 (263)
106 2o6s_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 129.7 15.1 104 2-110 11-117 (208)
107 2v70_A SLIT-2, SLIT homolog 2 99.4 4.5E-13 1.5E-17 133.4 12.1 123 2-125 36-162 (220)
108 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 131.3 14.3 106 2-112 23-131 (229)
109 2v70_A SLIT-2, SLIT homolog 2 99.4 1.4E-12 4.6E-17 130.0 13.6 99 2-103 15-116 (220)
110 2xot_A Amphoterin-induced prot 99.4 6.7E-13 2.3E-17 143.6 12.2 98 2-103 22-123 (361)
111 2v9t_B SLIT homolog 2 protein 99.4 1.8E-12 6.2E-17 129.1 14.1 98 2-103 15-115 (220)
112 4ezg_A Putative uncharacterize 99.4 8.5E-13 2.9E-17 129.2 11.3 119 1-123 47-166 (197)
113 2wfh_A SLIT homolog 2 protein 99.4 1.5E-12 5.2E-17 126.5 12.3 124 1-129 13-139 (193)
114 3goz_A Leucine-rich repeat-con 99.4 4.8E-14 1.7E-18 152.8 1.8 105 1-106 25-151 (362)
115 1w8a_A SLIT protein; signaling 99.4 1.6E-12 5.4E-17 126.4 11.6 126 1-129 11-139 (192)
116 2o6s_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 127.4 12.7 123 1-125 31-157 (208)
117 1m9s_A Internalin B; cell inva 99.3 4E-12 1.4E-16 145.8 13.9 114 1-122 46-159 (605)
118 3cvr_A Invasion plasmid antige 99.3 9.5E-12 3.3E-16 140.9 16.5 89 2-103 63-151 (571)
119 1xeu_A Internalin C; cellular 99.3 9.2E-12 3.1E-16 127.7 14.3 168 2-223 23-190 (263)
120 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-12 1.1E-16 122.5 9.2 120 1-125 22-149 (176)
121 2xot_A Amphoterin-induced prot 99.3 5.1E-12 1.7E-16 136.6 11.0 124 1-125 42-172 (361)
122 1dce_A Protein (RAB geranylger 99.3 7.1E-12 2.4E-16 142.9 11.7 116 1-121 444-565 (567)
123 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.7E-16 117.8 9.5 103 19-123 21-127 (168)
124 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 3.9E-16 117.9 9.5 108 1-113 15-125 (174)
125 1w8a_A SLIT protein; signaling 99.3 1.6E-11 5.5E-16 119.3 10.4 104 1-104 32-138 (192)
126 4b8c_D Glucose-repressible alc 99.2 9.5E-12 3.2E-16 146.6 9.8 122 3-126 196-326 (727)
127 3g39_A Variable lymphocyte rec 99.2 2.6E-11 9E-16 115.0 9.9 99 1-103 12-113 (170)
128 2wfh_A SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 116.2 11.2 101 1-103 34-137 (193)
129 2o6r_A Variable lymphocyte rec 99.2 8.3E-11 2.8E-15 112.7 12.5 122 1-127 10-135 (177)
130 2je0_A Acidic leucine-rich nuc 99.2 2.8E-11 9.5E-16 112.4 8.3 104 20-125 15-122 (149)
131 2o6r_A Variable lymphocyte rec 99.2 7.4E-11 2.5E-15 113.1 10.9 103 1-104 31-136 (177)
132 3sb4_A Hypothetical leucine ri 99.2 2.3E-10 7.8E-15 122.0 14.4 288 438-792 23-327 (329)
133 4b8c_D Glucose-repressible alc 99.1 3E-11 1E-15 142.3 7.6 111 1-113 227-337 (727)
134 1a9n_A U2A', U2A'; complex (nu 99.1 7.5E-11 2.6E-15 112.8 7.3 100 1-103 45-151 (176)
135 1ds9_A Outer arm dynein; leuci 99.1 2.1E-12 7.1E-17 126.5 -4.2 118 2-123 22-147 (198)
136 1ds9_A Outer arm dynein; leuci 99.1 2.8E-12 9.6E-17 125.6 -4.2 119 1-123 51-181 (198)
137 1dce_A Protein (RAB geranylger 99.1 6E-11 2E-15 135.2 5.8 98 23-124 442-541 (567)
138 3sb4_A Hypothetical leucine ri 99.0 8.3E-10 2.8E-14 117.6 12.3 89 757-863 225-315 (329)
139 2r9u_A Variable lymphocyte rec 99.0 1.5E-09 5.2E-14 103.1 10.8 102 24-129 14-118 (174)
140 3g39_A Variable lymphocyte rec 99.0 1.9E-09 6.4E-14 102.1 10.8 103 23-129 10-115 (170)
141 4fdw_A Leucine rich hypothetic 98.8 2.1E-07 7.1E-12 101.1 21.9 184 663-896 202-395 (401)
142 4fdw_A Leucine rich hypothetic 98.8 2.3E-07 8E-12 100.7 22.1 61 498-564 136-197 (401)
143 2ifg_A High affinity nerve gro 98.8 1.2E-08 4.2E-13 109.6 10.1 99 2-103 12-114 (347)
144 2ifg_A High affinity nerve gro 98.7 3.1E-08 1.1E-12 106.4 10.0 103 25-130 11-117 (347)
145 4fs7_A Uncharacterized protein 98.7 6.7E-07 2.3E-11 97.6 20.4 189 659-875 180-374 (394)
146 4fs7_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 99.3 17.5 87 660-752 226-313 (394)
147 4gt6_A Cell surface protein; l 98.4 1.2E-05 4.2E-10 87.5 20.6 57 493-552 59-120 (394)
148 4gt6_A Cell surface protein; l 98.4 9.4E-06 3.2E-10 88.5 19.3 97 474-577 65-168 (394)
149 3un9_A NLR family member X1; l 98.3 8.8E-08 3E-12 103.0 0.4 126 1-127 75-222 (372)
150 3un9_A NLR family member X1; l 98.2 5E-07 1.7E-11 97.0 4.6 125 1-126 104-249 (372)
151 2ra8_A Uncharacterized protein 98.1 4.6E-06 1.6E-10 88.7 7.8 59 683-744 167-227 (362)
152 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.4E-11 78.8 4.6 87 474-561 62-154 (176)
153 4h09_A Hypothetical leucine ri 98.0 0.00021 7.3E-09 77.2 20.5 69 780-862 280-349 (379)
154 1io0_A Tropomodulin; LRR prote 98.0 3.7E-06 1.3E-10 80.4 5.2 109 15-124 29-159 (185)
155 4h09_A Hypothetical leucine ri 98.0 0.00057 1.9E-08 73.9 23.2 75 473-555 46-122 (379)
156 3rw6_A Nuclear RNA export fact 98.0 2.7E-06 9.4E-11 85.4 4.2 105 19-125 138-260 (267)
157 3e4g_A ATP synthase subunit S, 98.0 1.1E-05 3.7E-10 74.8 6.7 90 412-512 61-154 (176)
158 3rw6_A Nuclear RNA export fact 97.9 1.9E-06 6.4E-11 86.6 -0.3 80 19-99 167-258 (267)
159 2ra8_A Uncharacterized protein 97.8 1.4E-05 4.7E-10 85.0 5.5 11 603-613 138-148 (362)
160 1io0_A Tropomodulin; LRR prote 97.7 1.1E-05 3.8E-10 77.0 2.8 103 1-103 39-162 (185)
161 3rfe_A Platelet glycoprotein I 96.2 0.0069 2.4E-07 53.3 5.9 52 25-78 11-65 (130)
162 3rfe_A Platelet glycoprotein I 95.9 0.013 4.4E-07 51.6 6.4 52 49-103 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0077 2.6E-07 56.8 4.9 85 19-103 38-137 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.1 0.063 2.2E-06 50.6 5.8 62 42-103 38-109 (197)
165 2lz0_A Uncharacterized protein 34.2 51 0.0017 26.7 4.7 38 731-795 15-52 (100)
166 2lz0_A Uncharacterized protein 23.2 1.3E+02 0.0045 24.2 5.3 45 32-77 6-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-49 Score=474.60 Aligned_cols=674 Identities=18% Similarity=0.113 Sum_probs=350.2
Q ss_pred CCCEEEccCCCCc-c---ccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchh--hhhccCcccE
Q 048779 23 SLRVFSLRGYRIS-E---LPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCA--DMGNLIKLHH 96 (911)
Q Consensus 23 ~L~~L~L~~n~l~-~---lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~~ 96 (911)
+++.|+|+++.+. . +|+++.++++|+.++++.+.+..+|+.|+.+++|++|++++|...+.+|. .++++++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCE
Confidence 4555555555554 2 45555555555555555555555555555555566666655544444554 5555556666
Q ss_pred EEcCCCcccccCcCCC-CCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEE
Q 048779 97 LNNSNTDLLKEMPVGI-GKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLREL 175 (911)
Q Consensus 97 L~L~~~~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 175 (911)
|++++|.+...+|..+ .++++|++|+....... .........+..+++|+.|
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------------~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS---------------------------GANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE---------------------------EETHHHHHHTTCCTTCCEE
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEECCCCccC---------------------------CcCChhhhhhccCCCCCEE
Confidence 6665555444444433 45555555432111000 0000000002333444444
Q ss_pred EEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcc
Q 048779 176 LLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSL 255 (911)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L 255 (911)
++++| .+...... ..+++|+.|++++|...+.+|.++.+++|
T Consensus 184 ~Ls~n-----------------------------------~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 225 (768)
T 3rgz_A 184 AISGN-----------------------------------KISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225 (768)
T ss_dssp ECCSS-----------------------------------EEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred ECCCC-----------------------------------cccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence 44332 22211111 13566666666666665555556666666
Q ss_pred cceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCCCCCCc
Q 048779 256 KHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKCLPA 335 (911)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 335 (911)
++|++++|.....++..+ .. +++|++|+++++.- ....+ ...+++|++|++++| .+++.+|..+
T Consensus 226 ~~L~Ls~n~l~~~~~~~l-~~-----l~~L~~L~Ls~n~l-~~~~~------~~~l~~L~~L~L~~n-~l~~~ip~~~-- 289 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAI-ST-----CTELKLLNISSNQF-VGPIP------PLPLKSLQYLSLAEN-KFTGEIPDFL-- 289 (768)
T ss_dssp CEEECCSSCCCSCHHHHT-TT-----CSSCCEEECCSSCC-EESCC------CCCCTTCCEEECCSS-EEEESCCCCS--
T ss_pred CEEECcCCcCCCcccHHH-hc-----CCCCCEEECCCCcc-cCccC------ccccCCCCEEECcCC-ccCCccCHHH--
Confidence 666666664222222111 11 55555555555431 11111 124666677777666 4554555421
Q ss_pred cceEEEeccCCcccccCCCCccceEEEcCCcchhh---hcccccccccccccccCCcccccccchhhcccccCCCCCCCC
Q 048779 336 LQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSV---SLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIP 412 (911)
Q Consensus 336 L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (911)
...+++|++|++++|..... .+.. ++
T Consensus 290 ---------------~~~~~~L~~L~Ls~n~l~~~~p~~~~~------------------------------------l~ 318 (768)
T 3rgz_A 290 ---------------SGACDTLTGLDLSGNHFYGAVPPFFGS------------------------------------CS 318 (768)
T ss_dssp ---------------CTTCTTCSEEECCSSEEEECCCGGGGG------------------------------------CT
T ss_pred ---------------HhhcCcCCEEECcCCcCCCccchHHhc------------------------------------CC
Confidence 11235556666665553321 1223 33
Q ss_pred CcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEecccccccccc
Q 048779 413 KLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQS 492 (911)
Q Consensus 413 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 492 (911)
+|++|++.++.....+ +...+..+++|++|++++|.....++.. + .. .+++|++|++++|.....+|..
T Consensus 319 ~L~~L~L~~n~l~~~i---p~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l----~~---l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 319 LLESLALSSNNFSGEL---PMDTLLKMRGLKVLDLSFNEFSGELPES-L----TN---LSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp TCCEEECCSSEEEEEC---CHHHHTTCTTCCEEECCSSEEEECCCTT-H----HH---HTTTCSEEECCSSEEEEECCTT
T ss_pred CccEEECCCCcccCcC---CHHHHhcCCCCCEEeCcCCccCccccHH-H----Hh---hhcCCcEEEccCCCcCCCcChh
Confidence 4444444443322221 2223455566666666655322122211 1 11 1125666666665554445544
Q ss_pred ccC--CCCccEEEecCCCCccccCC-CCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCC-CCC
Q 048779 493 LLS--LSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGV-QLP 568 (911)
Q Consensus 493 l~~--l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~ 568 (911)
+.. +++|++|++++|.....+|. ...+++|++|++++|.....++..+ ..+++|+.|++++|.....++.. ...
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 444 55566666666422222332 2235556666666655322333333 34555555555554322222211 222
Q ss_pred CCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhhhccCCCCCCcEEEEc
Q 048779 569 PSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLCVY 648 (911)
Q Consensus 569 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 648 (911)
++|+.|++++|.--.. .|..+. .+ ++|+.|+++
T Consensus 466 ~~L~~L~L~~N~l~~~-----------------------------------------~p~~l~-----~l-~~L~~L~L~ 498 (768)
T 3rgz_A 466 KTLETLILDFNDLTGE-----------------------------------------IPSGLS-----NC-TNLNWISLS 498 (768)
T ss_dssp TTCCEEECCSSCCCSC-----------------------------------------CCGGGG-----GC-TTCCEEECC
T ss_pred CCceEEEecCCcccCc-----------------------------------------CCHHHh-----cC-CCCCEEEcc
Confidence 3344444444321111 111121 12 566777777
Q ss_pred CCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCc---
Q 048779 649 GCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRL--- 725 (911)
Q Consensus 649 ~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--- 725 (911)
+|.....+|..++.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..++....+..+.+......
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 76666666666777777777777777766667767777777777777777655566665554444433332221111
Q ss_pred -------------------ccccccccCCCccCcEEeCC-c-cCccccCCCCCCCCCceEEecccchhhhhhhcCcccCC
Q 048779 726 -------------------EALPKGLHNLKSLQELRIGG-E-LPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHR 784 (911)
Q Consensus 726 -------------------~~~~~~l~~l~~L~~L~l~~-~-~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 784 (911)
...+..+..++.++.+++.. . -..++...+.+++|+.|++++|.....++ ..+.+
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~ 654 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGS 654 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGG
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhc
Confidence 01122233344444444444 1 12334445667889999999998776655 56899
Q ss_pred CCCccEEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCccccccccCCCCCcceEecccCCCccccCCCC
Q 048779 785 FSSLRHLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSSSIVDLQNLTELRLHDCPKLKYFPEKG 864 (911)
Q Consensus 785 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 864 (911)
+++|+.|++++| .....+|+.. ..+++|++|+++++.--..+|..+..+++|++|++++++--..+|..+
T Consensus 655 l~~L~~L~Ls~N-~l~g~ip~~l---------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 655 MPYLFILNLGHN-DISGSIPDEV---------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CTTCCEEECCSS-CCCSCCCGGG---------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred cccCCEEeCcCC-ccCCCCChHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 999999999995 3555777765 478999999999954444888899999999999999966667889877
Q ss_pred CcccccceeecCCchhH----HHhhccCCcccccccCCceEE
Q 048779 865 LPSSLLQLQIWGCPLMK----EKCRKDGGQYWDLLIHIPFVL 902 (911)
Q Consensus 865 ~~~sL~~L~i~~c~~l~----~~~~~~~~~~~~~i~~i~~~~ 902 (911)
.+.++....+.|||.++ ..|....+++|++|+|+|+++
T Consensus 725 ~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 78888888888887543 258889999999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-44 Score=427.42 Aligned_cols=650 Identities=16% Similarity=0.116 Sum_probs=377.4
Q ss_pred CeeeccCCccccc---ccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCC-cCCh--hhhcCCCccEEe
Q 048779 1 MLLNSRHGYLAHS---ILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIR-TLPE--SVNKLYNLHTLL 74 (911)
Q Consensus 1 ~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~-~lp~--~~~~L~~L~~L~ 74 (911)
++|||+++.+.+. +|+++..++.|+.++++.+.+..+|+.++.+++|++|+|++|.++ .+|. .++++++|++|+
T Consensus 53 ~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 132 (768)
T 3rgz_A 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132 (768)
T ss_dssp EEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEE
T ss_pred EEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEE
Confidence 3689999999998 899999999999999999998888889999999999999999988 5777 899999999999
Q ss_pred cCCccccccchhhh-hccCcccEEEcCCCcccccCcCC---CCCccccccccceeccCCCCCChhhhhhhhccccceeec
Q 048779 75 LVGCRRLKKLCADM-GNLIKLHHLNNSNTDLLKEMPVG---IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKIS 150 (911)
Q Consensus 75 l~~~~~~~~lp~~i-~~L~~L~~L~L~~~~~~~~~p~~---~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~ 150 (911)
+++|.....+|..+ +++++|++|++++|.+.+..|.. +..+++|++|+......
T Consensus 133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l---------------------- 190 (768)
T 3rgz_A 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI---------------------- 190 (768)
T ss_dssp CCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE----------------------
T ss_pred CcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc----------------------
Confidence 99987667777665 89999999999999955555555 78889999885432211
Q ss_pred ccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCC-CCCCcCCCCC
Q 048779 151 KLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTK-FPTWLGDSSF 229 (911)
Q Consensus 151 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~l~~~~~ 229 (911)
... ..+..+++|+.|++++|.... ..+.+..+++|+.|++++|.+.. +|.++.. +
T Consensus 191 --~~~--------~~~~~l~~L~~L~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l 246 (768)
T 3rgz_A 191 --SGD--------VDVSRCVNLEFLDVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGDFSRAIST--C 246 (768)
T ss_dssp --ESC--------CBCTTCTTCCEEECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSCHHHHTTT--C
T ss_pred --ccc--------CCcccCCcCCEEECcCCcCCC------------CCcccccCCCCCEEECcCCcCCCcccHHHhc--C
Confidence 000 013556778888887655421 11226677888888888877663 4555544 7
Q ss_pred CcccEEEEeCCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccc
Q 048779 230 SNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVE 309 (911)
Q Consensus 230 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 309 (911)
++|+.|++++|...+.+|.. .+++|++|++++|.....++..+... +++|++|+++++.-...... .+.
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~-----~~~L~~L~Ls~n~l~~~~p~-----~~~ 315 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGA-----CDTLTGLDLSGNHFYGAVPP-----FFG 315 (768)
T ss_dssp SSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTT-----CTTCSEEECCSSEEEECCCG-----GGG
T ss_pred CCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhh-----cCcCCEEECcCCcCCCccch-----HHh
Confidence 88888888888776666654 67788888888876443444433222 47788888877642222111 146
Q ss_pred cCCccceeecccCCCcccCCCC----CCCccceEEEeccCCc---ccccCCCC-ccceEEEcCCcchhhhcccccccccc
Q 048779 310 RFPKLRELHILRCSKLRGTFPK----CLPALQMLVIYRCEEF---SVSVTSLP-ALCNLQINGCEELSVSLTSLPALCNL 381 (911)
Q Consensus 310 ~~~~L~~L~l~~c~~l~~~~~~----~l~~L~~L~l~~~~~l---~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~L~~L 381 (911)
.+++|++|++++| .+++.+|. .+++|++|++++|... ...+..++ +|+.|++++|.....
T Consensus 316 ~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~----------- 383 (768)
T 3rgz_A 316 SCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP----------- 383 (768)
T ss_dssp GCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE-----------
T ss_pred cCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC-----------
Confidence 6777888888777 55545552 4556666666665422 11222233 566666666553321
Q ss_pred cccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhh
Q 048779 382 QIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEE 461 (911)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 461 (911)
....+. ...+++|++|++.+|..... .+..+..+++|++|++++|. ++...+.
T Consensus 384 ----------~~~~~~----------~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~-l~~~~p~-- 436 (768)
T 3rgz_A 384 ----------ILPNLC----------QNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNY-LSGTIPS-- 436 (768)
T ss_dssp ----------CCTTTT----------CSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSE-EESCCCG--
T ss_pred ----------cChhhh----------hcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCc-ccCcccH--
Confidence 100000 00133444444444433222 12334445555555555542 2211111
Q ss_pred HHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCC-CCCCCCCcEEEeccCCCCCccchhh
Q 048779 462 EDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISECDALKSLPEAW 540 (911)
Q Consensus 462 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 540 (911)
.+..+ ++|+.|++++|.....+|..+..+++|++|++++|.....+|. ...+++|++|++++|.....++..+
T Consensus 437 --~l~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 437 --SLGSL----SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp --GGGGC----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred --HHhcC----CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 11111 4555555555544444555555555555555555322222222 2224455555555555322333332
Q ss_pred hcCCCCCccEEEEecCCCCccccCC-CCCCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccc
Q 048779 541 MCDTNSSLEILYIESCHSLRYIAGV-QLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTC 619 (911)
Q Consensus 541 ~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 619 (911)
..+++|++|++++|.....+|.. ...++|+.|++++|+--..+ |..+.... .+..+.+.....+..
T Consensus 511 --~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i--p~~~~~~~---------~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 511 --GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI--PAAMFKQS---------GKIAANFIAGKRYVY 577 (768)
T ss_dssp --GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC--CGGGGTTT---------TCBCCSTTCSCEEEE
T ss_pred --hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC--ChHHhccc---------chhhhhccccccccc
Confidence 34555555555554332233322 23344555555555322222 22222110 111111110000000
Q ss_pred c---------------cc-CCCCchhhhhhhccCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccc
Q 048779 620 I---------------FS-KNELPATLESLEVGNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSG 683 (911)
Q Consensus 620 i---------------~~-~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 683 (911)
+ .. .+..+..+..+ +.++.+++..+..-..+|..++.+++|+.|++++|.....+|..
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRL------STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGG------GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccchhhhcc------ccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 0 00 00011111111 22333333333333455666777788888888888777778878
Q ss_pred cccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccccCCCccCcEEeCC-ccC-ccccCCCCCCCCC
Q 048779 684 LHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNLKSLQELRIGG-ELP-SLEEDDGLPTDLR 761 (911)
Q Consensus 684 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~-~l~~~~~~~~~L~ 761 (911)
++++++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+.++++|++|++++ .+. .+|+ .+.+.++.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~ 730 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFP 730 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSC
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCC
Confidence 88888888888888766667777777788888888888655557777778888888888877 443 3343 34445555
Q ss_pred ceEEecccchh
Q 048779 762 SLEIIFNTKIW 772 (911)
Q Consensus 762 ~L~l~~c~~l~ 772 (911)
...+.+|+.+.
T Consensus 731 ~~~~~gN~~Lc 741 (768)
T 3rgz_A 731 PAKFLNNPGLC 741 (768)
T ss_dssp GGGGCSCTEEE
T ss_pred HHHhcCCchhc
Confidence 55566665544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-39 Score=383.89 Aligned_cols=240 Identities=17% Similarity=0.138 Sum_probs=139.0
Q ss_pred CCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccc-cccccCCCcceEEeccCccccccCCCCCCCCCccEEee
Q 048779 641 SLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILP-SGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEI 719 (911)
Q Consensus 641 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 719 (911)
+|+.|++++|......+..+..+++|++|++++|.....+| ..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 45555555554444444455555555555555555444333 34455555555555555432223333445555566655
Q ss_pred ccccC--cccccccccCCCccCcEEeCC-ccCccccC-CCCCCCCCceEEecccchhhhhhhc----CcccCCCCCccEE
Q 048779 720 YDCKR--LEALPKGLHNLKSLQELRIGG-ELPSLEED-DGLPTDLRSLEIIFNTKIWKSMIER----GQGFHRFSSLRHL 791 (911)
Q Consensus 720 ~~c~~--l~~~~~~l~~l~~L~~L~l~~-~~~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~----~~~~~~l~~L~~L 791 (911)
++|.. +..+|..+.++++|++|++++ .+..++.. ...+++|++|++++|.......... ...+.++++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 55421 133444555556666666655 55544432 3445566666666665433211000 0236788888888
Q ss_pred EeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCcccccc-ccCCCCCcceEecccCCCccccCCCC---Ccc
Q 048779 792 SIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHDCPKLKYFPEKG---LPS 867 (911)
Q Consensus 792 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~---~~~ 867 (911)
++++| .+..+|...+ ..+++|+.|++++ +.++.+|. .+..+++|++|++++ ++++.++... .++
T Consensus 542 ~L~~N--~l~~i~~~~~--------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 542 NLESN--GFDEIPVEVF--------KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFR 609 (680)
T ss_dssp ECCSS--CCCCCCTTTT--------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHT
T ss_pred ECCCC--CCCCCCHHHc--------ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhccccc
Confidence 88875 4556665432 4678888888887 67888887 457888999999988 5788877643 357
Q ss_pred cccceeecCCchhHHHhhc-cCCcccc
Q 048779 868 SLLQLQIWGCPLMKEKCRK-DGGQYWD 893 (911)
Q Consensus 868 sL~~L~i~~c~~l~~~~~~-~~~~~~~ 893 (911)
+|++|++++||-... |.. .+...|.
T Consensus 610 ~L~~l~l~~N~~~c~-c~~~~~~~~~~ 635 (680)
T 1ziw_A 610 NLTELDMRFNPFDCT-CESIAWFVNWI 635 (680)
T ss_dssp TCSEEECTTCCCCBC-CCCCSSEECCS
T ss_pred ccCEEEccCCCcccC-CccHHHHHHHH
Confidence 888999988887654 443 3444554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-39 Score=386.54 Aligned_cols=117 Identities=22% Similarity=0.237 Sum_probs=99.8
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
+++|.++++++ .+|..+. +++++|+|++|.++.+| ..|+++++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 36789999997 6787776 79999999999999885 5699999999999999999977 567999999999999995
Q ss_pred cccccchh-hhhccCcccEEEcCCCcccccCcC-CCCCcccccccc
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLC 122 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~ 122 (911)
.+..+|. .|+++++|++|++++|. +..+|. .++++++|++|+
T Consensus 84 -~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEE
T ss_pred -ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEE
Confidence 5667775 59999999999999999 666664 577777777774
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-36 Score=352.87 Aligned_cols=116 Identities=23% Similarity=0.257 Sum_probs=76.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 79 (911)
.+|.++++++ .+|..+. +++++|+|++|.++.+ +.+|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4566777776 5566554 5777777777777766 34677777777777777777766 3457777777777777754
Q ss_pred ccccchhhhhccCcccEEEcCCCcccccCc-CCCCCccccccc
Q 048779 80 RLKKLCADMGNLIKLHHLNNSNTDLLKEMP-VGIGKLTCLQTL 121 (911)
Q Consensus 80 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p-~~~~~L~~L~~L 121 (911)
.....|..|+++++|++|++++|. +..+| ..++++++|++|
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKL 133 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEE
T ss_pred ccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEE
Confidence 333346667777777777777777 44444 334444444444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.7e-36 Score=351.49 Aligned_cols=193 Identities=14% Similarity=0.102 Sum_probs=131.7
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 79 (911)
.+|.++..++ .+|..+. +.+++|+|++|.++.+ |.+|+++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4667777776 6777775 3789999999999887 67889999999999999988876 5678999999999999976
Q ss_pred ccccchhhhhccCcccEEEcCCCcccccC-cCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 80 RLKKLCADMGNLIKLHHLNNSNTDLLKEM-PVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 80 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~~-p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
.....|..|+++++|++|++++|. +..+ |..++.+++|++|+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L----------------------------------- 136 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYL----------------------------------- 136 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEEC-----------------------------------
T ss_pred ccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEEC-----------------------------------
Confidence 555557788999999999999998 5555 445666666666632
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCC-CCCcCCCCCCccc--EE
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKF-PTWLGDSSFSNLV--TL 235 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~~~~~~L~--~L 235 (911)
++|..... ....+..+++|+.|++++|.+..+ |..+.. +++|+ .|
T Consensus 137 -------------------~~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~l~L 184 (606)
T 3t6q_A 137 -------------------GSNHISSI-----------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS--LQQATNLSL 184 (606)
T ss_dssp -------------------CSSCCCCC-----------CCCTTCCCTTCCEEECCSSCCCEECHHHHHT--TTTCCSEEE
T ss_pred -------------------CCCccccc-----------CcccccCCcccCEEEcccCcccccChhhhhh--hcccceeEE
Confidence 21111000 011222356666666666665544 233332 66666 67
Q ss_pred EEeCCCCCCCCCCCCCcCcccceecccccc
Q 048779 236 KFEDCGMCTALPSVGQLPSLKHLTVRGMSR 265 (911)
Q Consensus 236 ~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~ 265 (911)
++++|...+..+......+|+.|++++|..
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred ecCCCccCccChhHhhhccccccccCCchh
Confidence 777777655555444556777777777753
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-35 Score=345.98 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=78.5
Q ss_pred CCEEEccCCCCccccccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCC
Q 048779 24 LRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 24 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~ 102 (911)
-+.++.++..++++|..+.. ++++|++++|.|+.+ |..|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 45788999999999987754 799999999999988 567999999999999997655555788999999999999999
Q ss_pred cccccCcCCCCCccccccc
Q 048779 103 DLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 103 ~~~~~~p~~~~~L~~L~~L 121 (911)
.+....|..++.+++|++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CCSEECTTTTSSCTTCCEE
T ss_pred cccccChhhhcccccccEe
Confidence 9444445566666666665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-36 Score=352.13 Aligned_cols=122 Identities=23% Similarity=0.275 Sum_probs=107.8
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
++||+++|++++..+.+|..+++|++|++++|.++.+ |.+|+++++||+|++++|.++.+ |..|+++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 5799999999988888999999999999999999988 77899999999999999999988 678999999999999996
Q ss_pred cccccch-hhhhccCcccEEEcCCCcccc-cCcCCCCCccccccccc
Q 048779 79 RRLKKLC-ADMGNLIKLHHLNNSNTDLLK-EMPVGIGKLTCLQTLCN 123 (911)
Q Consensus 79 ~~~~~lp-~~i~~L~~L~~L~L~~~~~~~-~~p~~~~~L~~L~~L~~ 123 (911)
. +..+| ..++++++|++|++++|.+.. .+|..++++++|++|+.
T Consensus 115 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 115 K-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp C-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred c-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 5 54554 679999999999999999433 57888888888888854
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=329.79 Aligned_cols=117 Identities=21% Similarity=0.117 Sum_probs=87.5
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCC-CCCcC-ChhhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGT-EIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~-~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
+.|.++++++ .+|. ..+++++|+|++|.|+.+ |.+|.++++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4677788887 4565 346888999999888876 778888999999999888 44466 566888899999999886
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCC--CCCcccccccc
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVG--IGKLTCLQTLC 122 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~--~~~L~~L~~L~ 122 (911)
......|..|+++++|++|++++|.+...+|.. ++.+++|++|+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 655555788888899999999888844445543 55666665553
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=323.84 Aligned_cols=95 Identities=24% Similarity=0.166 Sum_probs=81.8
Q ss_pred CEEEccCCCCccccccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccc-hhhhhccCcccEEEcCCC
Q 048779 25 RVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKL-CADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 25 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~L~~~ 102 (911)
++.+.+++.++.+|. -.++|++|+|++|.|+.+ |..|.++++|++|++++|.....+ |..|+++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 477888999999997 558999999999999977 577999999999999998777777 677999999999999999
Q ss_pred cccccCcCCCCCcccccccc
Q 048779 103 DLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 103 ~~~~~~p~~~~~L~~L~~L~ 122 (911)
.+....|..|+.+++|++|+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEE
T ss_pred cCcccCHhHccCCcccCEee
Confidence 94444477788888888874
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-32 Score=313.28 Aligned_cols=118 Identities=22% Similarity=0.187 Sum_probs=97.7
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 79 (911)
+.|.++++++ .+|..+. ++|++|++++|.++.+ |.+|.++++|++|++++|+++.++ ..|.++++|++|++++|.
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4578888887 6777665 7999999999999987 678999999999999999999886 679999999999999965
Q ss_pred ccccchhhhhccCcccEEEcCCCccccc--CcCCCCCccccccccc
Q 048779 80 RLKKLCADMGNLIKLHHLNNSNTDLLKE--MPVGIGKLTCLQTLCN 123 (911)
Q Consensus 80 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~--~p~~~~~L~~L~~L~~ 123 (911)
.....|..|+++++|++|++++|. +.. .|..++.+++|++|+.
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEE
T ss_pred cCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEEC
Confidence 444445569999999999999999 553 4556777777777743
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=314.06 Aligned_cols=114 Identities=26% Similarity=0.284 Sum_probs=72.5
Q ss_pred eeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccc
Q 048779 3 LNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 3 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~ 80 (911)
.+-++.+++ .+|..+. +.+++|++++|.++.+ +.+|.++++|++|++++|+++.++ ..|.++++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~- 87 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP- 87 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-
Confidence 444555554 4555553 4677777777777766 456777777777777777777664 447777777777777754
Q ss_pred cccc-hhhhhccCcccEEEcCCCcccccCcC-CCCCccccccc
Q 048779 81 LKKL-CADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTL 121 (911)
Q Consensus 81 ~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L 121 (911)
+..+ |..|+++++|++|++++|. +..+|. .++.+++|++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEE
T ss_pred CCccCHhhhcCccccccccccccc-cccCCCccccccccccEE
Confidence 4434 4567777777777777777 544443 24444443333
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=314.03 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=106.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~ 78 (911)
+.||+++|++++..+.+|..+++|++|+|++|.++.+ |.+|+++++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 5799999999988888999999999999999999988 577999999999999999999886 67999999999999995
Q ss_pred cccccchh-hhhccCcccEEEcCCCcccc-cCcCCCCCcccccccc
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTDLLK-EMPVGIGKLTCLQTLC 122 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~~~~-~~p~~~~~L~~L~~L~ 122 (911)
.+..+|. .++++++|++|++++|.+.. .+|..++++++|++|+
T Consensus 111 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp -CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred -ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence 5666664 59999999999999999333 3677788888888774
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-31 Score=310.51 Aligned_cols=462 Identities=19% Similarity=0.180 Sum_probs=282.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
++||+++|++++..|.+|..+++|++|++++|.++.+ |++|+++++|++|++++|.++.+|.. |+++++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 5799999999988889999999999999999999987 57899999999999999999998765 999999999999996
Q ss_pred cccc-cchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 79 RRLK-KLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 79 ~~~~-~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
.... ..|..++++++|++|++++|...+.+|. .+..+++|++|+.......
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------- 161 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--------------------------- 161 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---------------------------
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc---------------------------
Confidence 5333 4567899999999999999986777774 6888999888854432211
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCC---CCCcCCCCCCccc
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKF---PTWLGDSSFSNLV 233 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~l~~~~~~~L~ 233 (911)
+..+..+..+++|+.|+++++.....+ . ..+..+++|+.|+++++....+ |.++. ..+++|+
T Consensus 162 ---~~~~~~l~~l~~L~~L~l~~n~~~~~~--------~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~ 226 (549)
T 2z81_A 162 ---NYQSQSLKSIRDIHHLTLHLSESAFLL--------E---IFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMK 226 (549)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSBSTTHH--------H---HHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCC
T ss_pred ---ccChhhhhccccCceEecccCcccccc--------h---hhHhhcccccEEEccCCccccccccccchh-hhhhccc
Confidence 111223555666777777655431100 0 0012356677777777666543 22221 1356677
Q ss_pred EEEEeCCCCCCCCC-----CCCCcCcccceeccccccccccCcc-ccCCCCCCCCCCcceEEeccCcccccccccCCCCc
Q 048779 234 TLKFEDCGMCTALP-----SVGQLPSLKHLTVRGMSRVKRLGSE-FYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQG 307 (911)
Q Consensus 234 ~L~L~~~~~~~~l~-----~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 307 (911)
.|++.+|...+..+ .+..+++|+.+++++|.. ..+... .........+++|+.|.+.++..-...........
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 77777665432211 233456667777766642 221100 00000123356666666665431111000000000
Q ss_pred cccCCccceeecccCCCcccCCCC----CCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccc
Q 048779 308 VERFPKLRELHILRCSKLRGTFPK----CLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQI 383 (911)
Q Consensus 308 ~~~~~~L~~L~l~~c~~l~~~~~~----~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 383 (911)
...+++|++|++++| .++ .+|. .+++|++|++++|......... ...+..+++|+.|++
T Consensus 306 ~~~~~~L~~L~l~~n-~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 306 YSLLEKVKRITVENS-KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------------SACKGAWPSLQTLVL 368 (549)
T ss_dssp HHHSTTCCEEEEESS-CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHH---------------HTCTTSSTTCCEEEC
T ss_pred hhhcccceEEEeccC-ccc-cCCHHHHhcCccccEEEccCCccccccccc---------------hhhhhccccCcEEEc
Confidence 123456666666665 454 4552 2445555555554432210000 001233444444444
Q ss_pred cccCCccccc--ccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhh
Q 048779 384 GRCEELSVSV--TSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEE 461 (911)
Q Consensus 384 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 461 (911)
++|....... ..+. .+++|++|+++++... . .+..+..+++|++|++++|. ++.++..
T Consensus 369 s~N~l~~~~~~~~~~~------------~l~~L~~L~Ls~N~l~-~----lp~~~~~~~~L~~L~Ls~N~-l~~l~~~-- 428 (549)
T 2z81_A 369 SQNHLRSMQKTGEILL------------TLKNLTSLDISRNTFH-P----MPDSCQWPEKMRFLNLSSTG-IRVVKTC-- 428 (549)
T ss_dssp TTSCCCCHHHHHHHGG------------GCTTCCEEECTTCCCC-C----CCSCCCCCTTCCEEECTTSC-CSCCCTT--
T ss_pred cCCcccccccchhhhh------------cCCCCCEEECCCCCCc-c----CChhhcccccccEEECCCCC-cccccch--
Confidence 4443322211 0111 2566666666665332 1 22345667788888888873 4443321
Q ss_pred HHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcEEEeccCCCCCccchhhh
Q 048779 462 EDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECDALKSLPEAWM 541 (911)
Q Consensus 462 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 541 (911)
+|++|++|++++|.. +.++ ..+++|++|++++ +.++.+|....+++|++|++++|. ++.++...+
T Consensus 429 ---------~~~~L~~L~Ls~N~l-~~~~---~~l~~L~~L~Ls~-N~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 493 (549)
T 2z81_A 429 ---------IPQTLEVLDVSNNNL-DSFS---LFLPRLQELYISR-NKLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIF 493 (549)
T ss_dssp ---------SCTTCSEEECCSSCC-SCCC---CCCTTCCEEECCS-SCCSSCCCGGGCTTCCEEECCSSC-CCCCCTTGG
T ss_pred ---------hcCCceEEECCCCCh-hhhc---ccCChhcEEECCC-CccCcCCCcccCccCCEEecCCCc-cCCcCHHHH
Confidence 346888888888855 3332 4688899999998 477788877778889999999887 666655544
Q ss_pred cCCCCCccEEEEecCCC
Q 048779 542 CDTNSSLEILYIESCHS 558 (911)
Q Consensus 542 ~~~~~~L~~L~l~~c~~ 558 (911)
..+++|+.|++++|+.
T Consensus 494 -~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 494 -DRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -GGCTTCCEEECCSSCB
T ss_pred -hcCcccCEEEecCCCc
Confidence 6788888888888754
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=7.5e-32 Score=315.47 Aligned_cols=424 Identities=17% Similarity=0.163 Sum_probs=243.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc----------------------------------cccc-----
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP----------------------------------DSVG----- 42 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp----------------------------------~~~~----- 42 (911)
.|+|++|++.|.+|++|+.+++|++|+|++|.+..-+ ..+.
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 5899999999999999999999999999999652111 0010
Q ss_pred --------------CCCCCCeEEcc--CCCCCcCChhhhcCCCccEEecCCcccccc-----------------chhhhh
Q 048779 43 --------------DLRYLRHLNLS--GTEIRTLPESVNKLYNLHTLLLVGCRRLKK-----------------LCADMG 89 (911)
Q Consensus 43 --------------~l~~L~~L~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~-----------------lp~~i~ 89 (911)
....++.+.+. +|+++.+|+.|+++++|++|++++|..... +|..++
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 11122222222 467777888899999999999998653333 888888
Q ss_pred --ccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh-hhhhcc
Q 048779 90 --NLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN-AKEAQM 166 (911)
Q Consensus 90 --~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l 166 (911)
++++|++|++++|.+.+.+|..++++++|+.|+...... ..+ ..+..+
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~-----------------------------l~~~~lp~~~ 295 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-----------------------------ISGEQLKDDW 295 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT-----------------------------SCHHHHHHHH
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC-----------------------------CccccchHHH
Confidence 899999999999987888888888888888885322210 000 111111
Q ss_pred CCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCC--CcCCCCCCcccEEEEeCCCCCC
Q 048779 167 DGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPT--WLGDSSFSNLVTLKFEDCGMCT 244 (911)
Q Consensus 167 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~l~~~~~~~L~~L~L~~~~~~~ 244 (911)
..+ ..+..+++|+.|++++|.+..+|. .+.. +++|+.|++++|...+
T Consensus 296 ~~L-----------------------------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 296 QAL-----------------------------ADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEG 344 (636)
T ss_dssp HHH-----------------------------HHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEE
T ss_pred Hhh-----------------------------hccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCcc
Confidence 111 011123556666666676667776 5654 7888888888888765
Q ss_pred CCCCCCCcCcccceeccccccccccCccccCCCCCCCCCC-cceEEeccCcccccccccCCCCccccCCccceeecccCC
Q 048779 245 ALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPC-LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCS 323 (911)
Q Consensus 245 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 323 (911)
.+|.++.+++|++|++++|. +..++..+.. +++ |++|+++++. +..+... . ....+++|++|++++|
T Consensus 345 ~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~------l~~~L~~L~Ls~N~-l~~lp~~-~--~~~~l~~L~~L~Ls~N- 412 (636)
T 4eco_A 345 KLPAFGSEIKLASLNLAYNQ-ITEIPANFCG------FTEQVENLSFAHNK-LKYIPNI-F--DAKSVSVMSAIDFSYN- 412 (636)
T ss_dssp ECCCCEEEEEESEEECCSSE-EEECCTTSEE------ECTTCCEEECCSSC-CSSCCSC-C--CTTCSSCEEEEECCSS-
T ss_pred chhhhCCCCCCCEEECCCCc-cccccHhhhh------hcccCcEEEccCCc-Ccccchh-h--hhcccCccCEEECcCC-
Confidence 77777778888888888875 4444433222 455 6666666543 2221111 0 0122346666666666
Q ss_pred CcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCcccccccchhhcccc
Q 048779 324 KLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSLPALCNLQ 403 (911)
Q Consensus 324 ~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 403 (911)
.+++..|..++... ...-.+++|+.|++++|.....
T Consensus 413 ~l~~~~p~~l~~~~-----------~~~~~~~~L~~L~Ls~N~l~~l--------------------------------- 448 (636)
T 4eco_A 413 EIGSVDGKNFDPLD-----------PTPFKGINVSSINLSNNQISKF--------------------------------- 448 (636)
T ss_dssp CTTTTTTCSSCTTC-----------SSCCCCCCEEEEECCSSCCCSC---------------------------------
T ss_pred cCCCcchhhhcccc-----------cccccCCCCCEEECcCCccCcC---------------------------------
Confidence 45544444322000 0000233445555554442210
Q ss_pred cCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHH---HhhhcccccCcceEEE
Q 048779 404 IGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQ---RQKLCEFSCRLEYLRL 480 (911)
Q Consensus 404 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~---~~~l~~~~~~L~~L~l 480 (911)
+...+..+++|++|++++| .++.++...+... ...+ ++|+.|++
T Consensus 449 ----------------------------p~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l----~~L~~L~L 495 (636)
T 4eco_A 449 ----------------------------PKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNT----YLLTSIDL 495 (636)
T ss_dssp ----------------------------CTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTG----GGCCEEEC
T ss_pred ----------------------------CHHHHccCCCCCEEECCCC-CCCCcCHHHhcccccccccc----CCccEEEC
Confidence 1222333444444444444 2223322211100 0000 25666666
Q ss_pred Eecccccccccccc--CCCCccEEEecCCCCccccCC-CCCCCCCcEEEec------cCCCCCccchhhhcCCCCCccEE
Q 048779 481 YICEGLVKLPQSLL--SLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEIS------ECDALKSLPEAWMCDTNSSLEIL 551 (911)
Q Consensus 481 ~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~------~~~~l~~~~~~~~~~~~~~L~~L 551 (911)
++|.. ..+|..+. .+++|++|++++ +.++.+|. ...+++|++|+++ +|.....++..+ ..+++|++|
T Consensus 496 s~N~l-~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L 571 (636)
T 4eco_A 496 RFNKL-TKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQL 571 (636)
T ss_dssp CSSCC-CBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEE
T ss_pred cCCcC-CccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEE
Confidence 66644 35666555 667777777777 34444543 2336667777774 344344455444 567778888
Q ss_pred EEecCCCCccccCCCCCCCCceeecccCC
Q 048779 552 YIESCHSLRYIAGVQLPPSLKTLFIDECG 580 (911)
Q Consensus 552 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 580 (911)
++++| .++.+|.. +.++|+.|++++|+
T Consensus 572 ~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 572 QIGSN-DIRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp ECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred ECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence 88775 34666654 33678888888775
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=295.75 Aligned_cols=115 Identities=23% Similarity=0.229 Sum_probs=93.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
++||+++|+++ .+|..+. ++|++|++++|.++.++ .+|.++++|++|++++|+++.+ |..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 5787776 89999999999999874 6889999999999999999977 677999999999999995
Q ss_pred cccccchhhhhccCcccEEEcCCCcccc-cCcCCCCCccccccc
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLK-EMPVGIGKLTCLQTL 121 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~-~~p~~~~~L~~L~~L 121 (911)
.++.+|.. .+++|++|++++|.+.. .+|..++.+++|++|
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred -ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 56678876 89999999999998332 245556666665555
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.2e-31 Score=311.06 Aligned_cols=422 Identities=16% Similarity=0.131 Sum_probs=229.0
Q ss_pred eeeccCCcccccccccccCCCCCCEEEc-cCCCCccc-ccc---------------------------------------
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSL-RGYRISEL-PDS--------------------------------------- 40 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~l-p~~--------------------------------------- 40 (911)
.|+|++|++.|.+|++|+.+++|++|+| ++|.++.. |..
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 5899999999999999999999999999 77754311 100
Q ss_pred ------------ccCCCCCCeEEccC--CCCCcCChhhhcCCCccEEecCCccccc-----------------cchhhhh
Q 048779 41 ------------VGDLRYLRHLNLSG--TEIRTLPESVNKLYNLHTLLLVGCRRLK-----------------KLCADMG 89 (911)
Q Consensus 41 ------------~~~l~~L~~L~L~~--~~l~~lp~~~~~L~~L~~L~l~~~~~~~-----------------~lp~~i~ 89 (911)
......++.+.+.. |+++.+|..|+++++|++|++++|.... .+|..++
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 01122333444433 6677788888889999999998865444 2888877
Q ss_pred --ccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh-hhhhcc
Q 048779 90 --NLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN-AKEAQM 166 (911)
Q Consensus 90 --~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l 166 (911)
++++|++|++++|.+.+.+|..++++++|+.|+...... ..+ ..+..+
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~-----------------------------lsg~~iP~~i 537 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG-----------------------------ISAAQLKADW 537 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT-----------------------------SCHHHHHHHH
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC-----------------------------cccccchHHH
Confidence 889999999988887888888888888888885322210 000 011101
Q ss_pred CCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCC--CcCCCCCCcccEEEEeCCCCCC
Q 048779 167 DGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPT--WLGDSSFSNLVTLKFEDCGMCT 244 (911)
Q Consensus 167 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~l~~~~~~~L~~L~L~~~~~~~ 244 (911)
..+. ..+..+++|+.|++++|.+..+|. .+.. +++|+.|++++|...
T Consensus 538 ~~L~----------------------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 538 TRLA----------------------------DDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR- 586 (876)
T ss_dssp HHHH----------------------------HCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-
T ss_pred Hhhh----------------------------hcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-
Confidence 0000 022234556666666666666666 5544 677777777777664
Q ss_pred CCCCCCCcCcccceeccccccccccCccccCCCCCCCCCC-cceEEeccCcccccccccCCCCccccCCccceeecccCC
Q 048779 245 ALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPC-LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCS 323 (911)
Q Consensus 245 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 323 (911)
.+|.++.+++|+.|++++|. +..++..+.. +++ |++|+++++. +..+... . .....++|+.|++++|
T Consensus 587 ~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~------l~~~L~~L~Ls~N~-L~~lp~~-~--~~~~~~~L~~L~Ls~N- 654 (876)
T 4ecn_A 587 HLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCA------FTDQVEGLGFSHNK-LKYIPNI-F--NAKSVYVMGSVDFSYN- 654 (876)
T ss_dssp BCCCCCTTSEESEEECCSSC-CSCCCTTSCE------ECTTCCEEECCSSC-CCSCCSC-C--CTTCSSCEEEEECCSS-
T ss_pred cchhhcCCCcceEEECcCCc-cccchHHHhh------ccccCCEEECcCCC-CCcCchh-h--hccccCCCCEEECcCC-
Confidence 66666677777777777664 3233322111 344 4445444432 2111100 0 0112233666666655
Q ss_pred CcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCcccccccchhhcccc
Q 048779 324 KLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSLPALCNLQ 403 (911)
Q Consensus 324 ~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 403 (911)
.+.+.+|.....+ .....++|+.|++++|.....
T Consensus 655 ~l~g~ip~l~~~l-------------~~~~~~~L~~L~Ls~N~L~~l--------------------------------- 688 (876)
T 4ecn_A 655 KIGSEGRNISCSM-------------DDYKGINASTVTLSYNEIQKF--------------------------------- 688 (876)
T ss_dssp CTTTTSSSCSSCT-------------TTCCCCCEEEEECCSSCCCSC---------------------------------
T ss_pred cCCCccccchhhh-------------ccccCCCcCEEEccCCcCCcc---------------------------------
Confidence 3433322110000 000122444444444432210
Q ss_pred cCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHH---HhhhcccccCcceEEE
Q 048779 404 IGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQ---RQKLCEFSCRLEYLRL 480 (911)
Q Consensus 404 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~---~~~l~~~~~~L~~L~l 480 (911)
+...+..+++|+.|++++| .+..++...+... ...+ ++|+.|++
T Consensus 689 ----------------------------p~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl----~~L~~L~L 735 (876)
T 4ecn_A 689 ----------------------------PTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT----YLLTTIDL 735 (876)
T ss_dssp ----------------------------CHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTG----GGCCEEEC
T ss_pred ----------------------------CHHHHccCCCCCEEECCCC-cCCccChHHhcccccccccc----CCccEEEC
Confidence 1122233444444444443 2223222211100 0000 25666666
Q ss_pred Eecccccccccccc--CCCCccEEEecCCCCccccCC-CCCCCCCcEEEecc------CCCCCccchhhhcCCCCCccEE
Q 048779 481 YICEGLVKLPQSLL--SLSSLREIFIGGCNSLVSFPE-VALPSKLKKIEISE------CDALKSLPEAWMCDTNSSLEIL 551 (911)
Q Consensus 481 ~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~~~L~~L 551 (911)
++|.. ..+|..+. .+++|+.|++++ +.++.+|. ...+++|+.|++++ |.....++..+ ..+++|+.|
T Consensus 736 s~N~L-~~lp~~l~~~~l~~L~~L~Ls~-N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L 811 (876)
T 4ecn_A 736 RFNKL-TSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQL 811 (876)
T ss_dssp CSSCC-CCCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEE
T ss_pred CCCCC-ccchHHhhhccCCCcCEEEeCC-CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEE
Confidence 66543 35565554 566666666666 34444543 23356666666655 44344455444 567888888
Q ss_pred EEecCCCCccccCCCCCCCCceeecccCC
Q 048779 552 YIESCHSLRYIAGVQLPPSLKTLFIDECG 580 (911)
Q Consensus 552 ~l~~c~~l~~~~~~~~~~~L~~L~l~~c~ 580 (911)
++++|. +..+|.. +.++|+.|++++|+
T Consensus 812 ~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 812 QIGSND-IRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp ECCSSC-CCBCCSC-CCSSSCEEECCSCT
T ss_pred ECCCCC-CCccCHh-hcCCCCEEECCCCC
Confidence 888754 4666654 34578888888876
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-29 Score=300.26 Aligned_cols=119 Identities=26% Similarity=0.330 Sum_probs=60.6
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 79 (911)
+|||++|+|++..+.+|..+++|++|+|++|.|+.+ |++|+++++|++|+|++|+|+.+|. .|.++++|++|++++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N- 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET- 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-
Confidence 455555555544444555555555555555555555 3345555555555555555555543 2555555555555553
Q ss_pred ccccchh-hhhccCcccEEEcCCCccccc--CcCCCCCcccccccc
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKE--MPVGIGKLTCLQTLC 122 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~--~p~~~~~L~~L~~L~ 122 (911)
.+..+|. .|+++++|++|++++|. +.. +|..++.+++|++|+
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhc
Confidence 2333332 35555555555555555 222 233445555555553
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.8e-29 Score=297.54 Aligned_cols=373 Identities=13% Similarity=0.108 Sum_probs=191.1
Q ss_pred CcccccccccccCCCCCCEEEccCCCCcc------------------cccccc--CCCCCCeEEccCCCCC-cCChhhhc
Q 048779 8 GYLAHSILPKLFKLQSLRVFSLRGYRISE------------------LPDSVG--DLRYLRHLNLSGTEIR-TLPESVNK 66 (911)
Q Consensus 8 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~~~l~-~lp~~~~~ 66 (911)
|++++ +|..|..+++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 33443 56666666777777777776665 666655 6777777777666544 56666667
Q ss_pred CCCccEEecCCcc-ccc-cchhhhhccC-------cccEEEcCCCcccccCcC--CCCCccccccccceeccCCCCCChh
Q 048779 67 LYNLHTLLLVGCR-RLK-KLCADMGNLI-------KLHHLNNSNTDLLKEMPV--GIGKLTCLQTLCNFVVGKDSGSGLP 135 (911)
Q Consensus 67 L~~L~~L~l~~~~-~~~-~lp~~i~~L~-------~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~l~ 135 (911)
+++|+.|++++|. ... .+|..|++++ +|++|++++|. +..+|. .++.+++|+.|+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~------------- 579 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLD------------- 579 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEE-------------
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEE-------------
Confidence 7777777777654 223 4666665555 67777777766 446666 566666666663
Q ss_pred hhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeee
Q 048779 136 ELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGY 215 (911)
Q Consensus 136 ~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 215 (911)
+++|... .+ +.+..+++|+.|++++|
T Consensus 580 -----------------------------------------Ls~N~l~------------~l-p~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 580 -----------------------------------------CVHNKVR------------HL-EAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp -----------------------------------------CTTSCCC------------BC-CCCCTTSEESEEECCSS
T ss_pred -----------------------------------------CCCCCcc------------cc-hhhcCCCcceEEECcCC
Confidence 2211110 01 13333444444455444
Q ss_pred CCCCCCCCcCCCCCCc-ccEEEEeCCCCCCCCC-CCCCc--CcccceeccccccccccCccccCCCCCCCCCCcceEEec
Q 048779 216 GGTKFPTWLGDSSFSN-LVTLKFEDCGMCTALP-SVGQL--PSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFE 291 (911)
Q Consensus 216 ~~~~~p~~l~~~~~~~-L~~L~L~~~~~~~~l~-~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (911)
.+..+|.++.. +++ |+.|++++|... .+| .+..+ ++|+.|++++|.....++ .+.........++|+.|+++
T Consensus 606 ~l~~lp~~l~~--l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 606 QIEEIPEDFCA--FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CCSCCCTTSCE--ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECC
T ss_pred ccccchHHHhh--ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEcc
Confidence 44444444332 444 555555555443 333 22222 225555555553211111 11000000113355666665
Q ss_pred cCcccccccccCCCCccccCCccceeecccCCCcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhh
Q 048779 292 DMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVS 371 (911)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 371 (911)
++. +..+.. .. ...+++|++|++++| .++ .+|...... ......++++|+.|++++|.....
T Consensus 682 ~N~-L~~lp~-~~---~~~l~~L~~L~Ls~N-~L~-~ip~~~~~~----------~~~~l~nl~~L~~L~Ls~N~L~~l- 743 (876)
T 4ecn_A 682 YNE-IQKFPT-EL---FATGSPISTIILSNN-LMT-SIPENSLKP----------KDGNYKNTYLLTTIDLRFNKLTSL- 743 (876)
T ss_dssp SSC-CCSCCH-HH---HHTTCCCSEEECCSC-CCS-CCCTTSSSC----------TTSCCTTGGGCCEEECCSSCCCCC-
T ss_pred CCc-CCccCH-HH---HccCCCCCEEECCCC-cCC-ccChHHhcc----------ccccccccCCccEEECCCCCCccc-
Confidence 543 221111 00 235677777887776 565 555421100 000122334666666666653210
Q ss_pred cccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCC
Q 048779 372 LTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCS 451 (911)
Q Consensus 372 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 451 (911)
+. .+. ...+++|+.|+++++.... + +..+..+++|+.|++++|.
T Consensus 744 ----p~-----------------~l~----------~~~l~~L~~L~Ls~N~L~~-l----p~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 744 ----SD-----------------DFR----------ATTLPYLSNMDVSYNCFSS-F----PTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp ----CG-----------------GGS----------TTTCTTCCEEECCSSCCSS-C----CCGGGGCTTCCEEECCCCB
T ss_pred ----hH-----------------Hhh----------hccCCCcCEEEeCCCCCCc-c----chhhhcCCCCCEEECCCCC
Confidence 00 000 0013444444444433221 1 2234455666666665542
Q ss_pred CcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcEEEeccCC
Q 048779 452 KLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECD 531 (911)
Q Consensus 452 ~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 531 (911)
. +++|.....+|.++..+++|++|++++| .+..+|.. +.++|+.|++++|+
T Consensus 788 ~---------------------------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 788 D---------------------------AEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp C---------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCT
T ss_pred C---------------------------cccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCC
Confidence 1 1224455677888888999999999995 55777765 45789999999888
Q ss_pred CCCccc
Q 048779 532 ALKSLP 537 (911)
Q Consensus 532 ~l~~~~ 537 (911)
+..+.
T Consensus 839 -l~~i~ 843 (876)
T 4ecn_A 839 -NISID 843 (876)
T ss_dssp -TCEEE
T ss_pred -CCccC
Confidence 44443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=282.07 Aligned_cols=425 Identities=17% Similarity=0.179 Sum_probs=260.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~ 79 (911)
++||+++|++++..|.+|..+++|++|+|++|.++.+ |.+|+++++|++|++++|+++.+|.. .+++|++|++++|.
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCc
Confidence 5799999999988888999999999999999999987 88999999999999999999999876 89999999999975
Q ss_pred ccc-cchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 80 RLK-KLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 80 ~~~-~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
... .+|..++++++|++|++++|. +.. ..+..+++|
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L---------------------------------------- 138 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHL---------------------------------------- 138 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTS----------------------------------------
T ss_pred cccccchhhhccCCcceEEEecCcc-cch--hhccccccc----------------------------------------
Confidence 444 467899999999999999998 322 122222222
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCC-cccEEEE
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFS-NLVTLKF 237 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~-~L~~L~L 237 (911)
+|+.|++++|.... ....|.++.. +. +...+++
T Consensus 139 ------------~L~~L~l~~n~l~~--------------------------------~~~~~~~l~~--l~~~~l~l~l 172 (520)
T 2z7x_B 139 ------------NISKVLLVLGETYG--------------------------------EKEDPEGLQD--FNTESLHIVF 172 (520)
T ss_dssp ------------CEEEEEEEECTTTT--------------------------------SSCCTTTTTT--CCEEEEEEEC
T ss_pred ------------eeeEEEeecccccc--------------------------------cccccccccc--cccceEEEEe
Confidence 12344444332200 0111222111 11 1223344
Q ss_pred eCCCCCCCCC--CCCCcCcccceeccccc-------cccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCcc
Q 048779 238 EDCGMCTALP--SVGQLPSLKHLTVRGMS-------RVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGV 308 (911)
Q Consensus 238 ~~~~~~~~l~--~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 308 (911)
.+|...+.++ .+..+++|+.+++++|. ....++ .+ ..+++|+.|.+.++.--.... .... ..
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l------~~l~~L~~L~l~~~~l~~~~~-~~~~-~~ 243 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL------QTNPKLSNLTLNNIETTWNSF-IRIL-QL 243 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG------GGCTTCCEEEEEEEEEEHHHH-HHHH-HH
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh------ccccchhhccccccccCHHHH-HHHH-HH
Confidence 4444444443 34456666666666653 111111 11 126667777766543111100 0000 01
Q ss_pred ccCCccceeecccCCCcccCCCCCC--------CccceEEEeccCCcccccC-----C---CCccceEEEcCCcchhhhc
Q 048779 309 ERFPKLRELHILRCSKLRGTFPKCL--------PALQMLVIYRCEEFSVSVT-----S---LPALCNLQINGCEELSVSL 372 (911)
Q Consensus 309 ~~~~~L~~L~l~~c~~l~~~~~~~l--------~~L~~L~l~~~~~l~~~~~-----~---l~~L~~L~l~~~~~~~~~~ 372 (911)
...++|++|++++| .+++.+|..+ ++|+.+++.++.. .++ . -.+|+.|++++|......+
T Consensus 244 ~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNV-KLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp HHTSSCSEEEEEEE-EEESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred hhhCcccEEEeecc-cccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCccccccc
Confidence 12457888888877 5665666433 2333333333322 111 0 0234445554444322110
Q ss_pred ccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCC
Q 048779 373 TSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSK 452 (911)
Q Consensus 373 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 452 (911)
...+++|++|++.++...... +..+..+++|++|++++| .
T Consensus 320 -----------------------------------~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N-~ 359 (520)
T 2z7x_B 320 -----------------------------------PSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMN-Q 359 (520)
T ss_dssp -----------------------------------CSSCCCCCEEECCSSCCCTTT----TTTCCCCSSCCEEECCSS-C
T ss_pred -----------------------------------hhhCCcccEEEeECCccChhh----hhhhccCCCCCEEEccCC-c
Confidence 123566667776666543322 334567778888888877 3
Q ss_pred cccchhhhhHHHHhhhcccccCcceEEEEecccccccccc-ccCCCCccEEEecCCCCccccCCCCCCCCCcEEEeccCC
Q 048779 453 LQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQS-LLSLSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECD 531 (911)
Q Consensus 453 l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 531 (911)
++.+.. ....+..+ ++|++|++++|.....+|.. +..+++|++|++++|..-..++ ..++++|++|++++|.
T Consensus 360 l~~l~~--~~~~~~~l----~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 360 LKELSK--IAEMTTQM----KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLPPRIKVLDLHSNK 432 (520)
T ss_dssp CCBHHH--HHHHHTTC----TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCCTTCCEEECCSSC
T ss_pred cCcccc--chHHHhhC----CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-hhhcccCCEEECCCCc
Confidence 443211 11223333 78888888888775556654 6778899999999854333333 2334789999999987
Q ss_pred CCCccchhhhcCCCCCccEEEEecCCCCccccCC--CCCCCCceeecccCC
Q 048779 532 ALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGV--QLPPSLKTLFIDECG 580 (911)
Q Consensus 532 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 580 (911)
++.++..+ ..+++|++|++++| .++.++.. ...++|+.|++++++
T Consensus 433 -l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 433 -IKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -CCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 66777766 37889999999885 67777754 345688899988886
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.2e-27 Score=282.99 Aligned_cols=110 Identities=27% Similarity=0.301 Sum_probs=82.6
Q ss_pred CcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCccccccch
Q 048779 8 GYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCRRLKKLC 85 (911)
Q Consensus 8 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~lp 85 (911)
-+++ .+|+.+. +.+++|+|++|.|+.+| .+|.++++||+|+|++|+|+.+|+ +|.++++|++|+|++| .++.+|
T Consensus 41 ~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~ 116 (635)
T 4g8a_A 41 LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLA 116 (635)
T ss_dssp SCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCC
Confidence 3454 5676664 47888888888888884 578888888888888888888864 5888888888888885 466665
Q ss_pred -hhhhccCcccEEEcCCCcccccCcC-CCCCcccccccc
Q 048779 86 -ADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLC 122 (911)
Q Consensus 86 -~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~ 122 (911)
..|+++++|++|++++|. +..+|. .|+++++|++|+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN 154 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred HHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeec
Confidence 457888888888888888 666665 366666666663
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.8e-29 Score=291.72 Aligned_cols=365 Identities=13% Similarity=0.166 Sum_probs=220.4
Q ss_pred CCcccccccccccCCCCCCEEEccCCCCcc------------------cccccc--CCCCCCeEEccCCCCC-cCChhhh
Q 048779 7 HGYLAHSILPKLFKLQSLRVFSLRGYRISE------------------LPDSVG--DLRYLRHLNLSGTEIR-TLPESVN 65 (911)
Q Consensus 7 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------lp~~~~--~l~~L~~L~L~~~~l~-~lp~~~~ 65 (911)
+|++++ +|..|+.+++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..|+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 346666 78888889999999999999887 888888 8999999999998766 7788889
Q ss_pred cCCCccEEecCCcc-ccc-cchhhhhcc------CcccEEEcCCCcccccCcC--CCCCccccccccceeccCCCCCChh
Q 048779 66 KLYNLHTLLLVGCR-RLK-KLCADMGNL------IKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLCNFVVGKDSGSGLP 135 (911)
Q Consensus 66 ~L~~L~~L~l~~~~-~~~-~lp~~i~~L------~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~~~~~~~~~~~~l~ 135 (911)
++++|++|++++|. ... .+|..++++ ++|++|++++|. +..+|. .++.+++|+.|+.......
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~------ 343 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLE------ 343 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCE------
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCc------
Confidence 99999999999876 344 688888876 899999999998 558888 7888888888853222110
Q ss_pred hhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCC-ccEEEEee
Q 048779 136 ELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKN-LEQFYICG 214 (911)
Q Consensus 136 ~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~ 214 (911)
+..+ .+..+++|+.|++++|... .++..+..+++ |+.|++++
T Consensus 344 ------------------------g~ip-~~~~l~~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 344 ------------------------GKLP-AFGSEIKLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ------------------------EECC-CCEEEEEESEEECCSSEEE------------ECCTTSEEECTTCCEEECCS
T ss_pred ------------------------cchh-hhCCCCCCCEEECCCCccc------------cccHhhhhhcccCcEEEccC
Confidence 0011 2445556666666544431 23334555566 66677766
Q ss_pred eCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCC-CCC-------CcCcccceeccccccccccCccccCCCCCCCCCCcc
Q 048779 215 YGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVG-------QLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLE 286 (911)
Q Consensus 215 ~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~-~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 286 (911)
|.+..+|.++....+++|+.|++++|...+.+| .+. .+++|++|++++|. +..++...
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~------------- 452 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKEL------------- 452 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHH-------------
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHH-------------
Confidence 666666665544334466666666666655444 333 44555555555553 22222211
Q ss_pred eEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCc
Q 048779 287 TLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCE 366 (911)
Q Consensus 287 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 366 (911)
...+++|++|++++| .++ .+|..... .......++++|+.|++++|.
T Consensus 453 ---------------------~~~l~~L~~L~Ls~N-~l~-~i~~~~~~----------~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 453 ---------------------FSTGSPLSSINLMGN-MLT-EIPKNSLK----------DENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ---------------------HHTTCCCSEEECCSS-CCS-BCCSSSSE----------ETTEECTTGGGCCEEECCSSC
T ss_pred ---------------------HccCCCCCEEECCCC-CCC-CcCHHHhc----------cccccccccCCccEEECcCCc
Confidence 233566667777666 455 44432100 000011223355555655554
Q ss_pred chhh--hcccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCe
Q 048779 367 ELSV--SLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKR 444 (911)
Q Consensus 367 ~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 444 (911)
.... .+. ...+++|++|++.++.... + +..+..+++|+.
T Consensus 500 l~~lp~~~~----------------------------------~~~l~~L~~L~Ls~N~l~~-i----p~~~~~l~~L~~ 540 (636)
T 4eco_A 500 LTKLSDDFR----------------------------------ATTLPYLVGIDLSYNSFSK-F----PTQPLNSSTLKG 540 (636)
T ss_dssp CCBCCGGGS----------------------------------TTTCTTCCEEECCSSCCSS-C----CCGGGGCSSCCE
T ss_pred CCccChhhh----------------------------------hccCCCcCEEECCCCCCCC-c----ChhhhcCCCCCE
Confidence 2210 000 0013333333333332211 1 123344555555
Q ss_pred EeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcE
Q 048779 445 LTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVALPSKLKK 524 (911)
Q Consensus 445 L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 524 (911)
|++++|..+ ++|.....+|.++..+++|++|++++| .++.+|.. +.++|++
T Consensus 541 L~Ls~N~~l---------------------------s~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~ 591 (636)
T 4eco_A 541 FGIRNQRDA---------------------------QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISV 591 (636)
T ss_dssp EECCSCBCT---------------------------TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCE
T ss_pred EECCCCccc---------------------------ccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCE
Confidence 555554211 234445667888888899999999984 55777764 4478899
Q ss_pred EEeccCC
Q 048779 525 IEISECD 531 (911)
Q Consensus 525 L~l~~~~ 531 (911)
|++++|+
T Consensus 592 L~Ls~N~ 598 (636)
T 4eco_A 592 LDIKDNP 598 (636)
T ss_dssp EECCSCT
T ss_pred EECcCCC
Confidence 9998887
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2e-28 Score=283.67 Aligned_cols=444 Identities=18% Similarity=0.132 Sum_probs=258.2
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
+++|+++|++++ +|..+. ++|++|++++|.++.++ .+|.++++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 357777777774 666554 67778888887777764 5677777888888887777766 455777778888888774
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCc--CCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMP--VGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p--~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
.++.+|.. .+++|++|++++|. +..+| ..++++++|++|+
T Consensus 111 -~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~---------------------------------- 152 (562)
T 3a79_B 111 -RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLG---------------------------------- 152 (562)
T ss_dssp -CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEE----------------------------------
T ss_pred -cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEe----------------------------------
Confidence 45567655 77778888887777 54443 4566666666663
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCC--CccEEEEeeeCC--CC-CCCCcCCCCCCc
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHK--NLEQFYICGYGG--TK-FPTWLGDSSFSN 231 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~--~~-~p~~l~~~~~~~ 231 (911)
++++... . ..+..++ +|+.|+++++.. .. .|.++..-....
T Consensus 153 --------------------L~~n~l~-----------~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 153 --------------------LSAAKFR-----------Q---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp --------------------EECSBCC-----------T---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred --------------------cCCCccc-----------c---CchhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 3322210 0 0111122 225555555544 22 233332211112
Q ss_pred ccEEEEeCCCCCCCCC--CCCCcCcccceecccccc----ccccCccccCCCCCCCCCCcceEEeccCcccccccccCCC
Q 048779 232 LVTLKFEDCGMCTALP--SVGQLPSLKHLTVRGMSR----VKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSS 305 (911)
Q Consensus 232 L~~L~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 305 (911)
+ .+++++|.....++ .+..+++|+.++++++.. +......+. ..++|+.+.+.++..-..... ..
T Consensus 199 l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~------~l~~L~~L~L~~~~l~~~~~~-~~- 269 (562)
T 3a79_B 199 L-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT------RGPTLLNVTLQHIETTWKCSV-KL- 269 (562)
T ss_dssp E-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH------SCSSCEEEEEEEEEECHHHHH-HH-
T ss_pred E-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh------ccCcceEEEecCCcCcHHHHH-HH-
Confidence 2 44566666655555 455778888888887631 111111111 167777787776431110000 00
Q ss_pred CccccCCccceeecccCCCcccCCCCCC-----CccceEEEeccCCcccccC--------CCCccceEEEcCCcchhhhc
Q 048779 306 QGVERFPKLRELHILRCSKLRGTFPKCL-----PALQMLVIYRCEEFSVSVT--------SLPALCNLQINGCEELSVSL 372 (911)
Q Consensus 306 ~~~~~~~~L~~L~l~~c~~l~~~~~~~l-----~~L~~L~l~~~~~l~~~~~--------~l~~L~~L~l~~~~~~~~~~ 372 (911)
......++|++|++++| .+++.+|..+ ++++.|.+.+...-...++ ...+|+.|++++|......+
T Consensus 270 ~~~~~~~~L~~L~l~~n-~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNL-TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348 (562)
T ss_dssp HHHHTTSSEEEEEEEEE-EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHhhhcccccEEEEecc-EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC
Confidence 00123458999999998 6776777655 6677766655433221111 01346666666665433211
Q ss_pred ccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCC
Q 048779 373 TSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSK 452 (911)
Q Consensus 373 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 452 (911)
...+++|++|++.++..... .+..+..+++|++|+++++ .
T Consensus 349 -----------------------------------~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N-~ 388 (562)
T 3a79_B 349 -----------------------------------PPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRN-G 388 (562)
T ss_dssp -----------------------------------CSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSS-C
T ss_pred -----------------------------------ccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCC-C
Confidence 01255566666665544332 2334566777777777776 4
Q ss_pred cccchhhhhHHHHhhhcccccCcceEEEEeccccccccc-cccCCCCccEEEecCCCCccccCCCCCCCCCcEEEeccCC
Q 048779 453 LQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQ-SLLSLSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECD 531 (911)
Q Consensus 453 l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 531 (911)
++.+... ...+..+ ++|++|++++|.....+|. .+..+++|++|+++++ .++......+.++|++|++++|.
T Consensus 389 l~~~~~~--~~~~~~l----~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N~ 461 (562)
T 3a79_B 389 LKNFFKV--ALMTKNM----SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNNR 461 (562)
T ss_dssp CCBTTHH--HHTTTTC----TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSSC
T ss_pred cCCcccc--hhhhcCC----CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCCc
Confidence 4433211 1112222 6778888877766554554 3666888888888885 34332222333688888888886
Q ss_pred CCCccchhhhcCCCCCccEEEEecCCCCccccCC--CCCCCCceeecccCC
Q 048779 532 ALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGV--QLPPSLKTLFIDECG 580 (911)
Q Consensus 532 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 580 (911)
++.++..+ ..+++|++|++++ +.++.++.. ...++|+.+++++++
T Consensus 462 -l~~ip~~~--~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 462 -IMSIPKDV--THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -CCCCCTTT--TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred -CcccChhh--cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 77777766 3788888888888 466677753 445678888888876
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.1e-26 Score=269.11 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=67.2
Q ss_pred CCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccccccchhhhhccCcccEEE
Q 048779 20 KLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLN 98 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 98 (911)
.+...+++++++|.++.+|..+. ++|++|++++|.++.+| ..|.++++|++|++++|......|..|+++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 34455888999998888887664 78899999999888886 4688889999999988643344467788889999999
Q ss_pred cCCCcccccCcCC
Q 048779 99 NSNTDLLKEMPVG 111 (911)
Q Consensus 99 L~~~~~~~~~p~~ 111 (911)
+++|. +..+|..
T Consensus 107 Ls~N~-l~~lp~~ 118 (562)
T 3a79_B 107 VSHNR-LQNISCC 118 (562)
T ss_dssp CTTSC-CCEECSC
T ss_pred CCCCc-CCccCcc
Confidence 98888 5566554
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.2e-27 Score=261.25 Aligned_cols=264 Identities=18% Similarity=0.121 Sum_probs=148.7
Q ss_pred CCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCC-cCChhhhcCCCc-------------cEEecCCccccccchh
Q 048779 21 LQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNL-------------HTLLLVGCRRLKKLCA 86 (911)
Q Consensus 21 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L-------------~~L~l~~~~~~~~lp~ 86 (911)
...|++|++++|.++.+|++++++++|++|++++|.+. .+|..++++++| ++|++++| .++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 46777777777777777777777777777777777666 667767766654 77777774 3555554
Q ss_pred hhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhcc
Q 048779 87 DMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQM 166 (911)
Q Consensus 87 ~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 166 (911)
. .++|++|++++|. +..+|..+ ++|+.|+..... +.. +
T Consensus 89 ~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~n~------------------------l~~-----------l 126 (454)
T 1jl5_A 89 L---PPHLESLVASCNS-LTELPELP---QSLKSLLVDNNN------------------------LKA-----------L 126 (454)
T ss_dssp C---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECCSSC------------------------CSC-----------C
T ss_pred C---cCCCCEEEccCCc-CCcccccc---CCCcEEECCCCc------------------------cCc-----------c
Confidence 2 3567777777777 55566432 445555321111 000 1
Q ss_pred CCC-CCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCC
Q 048779 167 DGK-KNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTA 245 (911)
Q Consensus 167 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~ 245 (911)
... ++|+.|++++|... ..+.+..+++|+.|++++|.+..+|.. ..+|+.|++++|... .
T Consensus 127 ~~~~~~L~~L~L~~n~l~-------------~lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~-~ 187 (454)
T 1jl5_A 127 SDLPPLLEYLGVSNNQLE-------------KLPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLE-E 187 (454)
T ss_dssp CSCCTTCCEEECCSSCCS-------------SCCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCS-S
T ss_pred cCCCCCCCEEECcCCCCC-------------CCcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCC-c
Confidence 011 46777777655442 122467778888888888888777764 468899999988764 4
Q ss_pred CCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCc
Q 048779 246 LPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKL 325 (911)
Q Consensus 246 l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 325 (911)
+|.++.+++|++|++++|. +..++. ..++|++|+++++. +..+. . ...+++|++|++++| .+
T Consensus 188 l~~~~~l~~L~~L~l~~N~-l~~l~~---------~~~~L~~L~l~~n~-l~~lp-~-----~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 188 LPELQNLPFLTAIYADNNS-LKKLPD---------LPLSLESIVAGNNI-LEELP-E-----LQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp CCCCTTCTTCCEEECCSSC-CSSCCC---------CCTTCCEEECCSSC-CSSCC-C-----CTTCTTCCEEECCSS-CC
T ss_pred CccccCCCCCCEEECCCCc-CCcCCC---------CcCcccEEECcCCc-CCccc-c-----cCCCCCCCEEECCCC-cC
Confidence 7788888999999998885 333321 14678888888763 33322 1 467888888888887 66
Q ss_pred ccCCCCCCCccceEEEeccCCcccccCCCCccceEEEcCCc
Q 048779 326 RGTFPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCE 366 (911)
Q Consensus 326 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 366 (911)
+ .+|..+++|++|++++|.... .....++|+.|++++|.
T Consensus 250 ~-~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 250 K-TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENI 288 (454)
T ss_dssp S-SCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred C-cccccccccCEEECCCCcccc-cCcccCcCCEEECcCCc
Confidence 6 566666666666666654222 11123445555555544
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=259.06 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=33.3
Q ss_pred cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcc-------------cEEEcCCCcc
Q 048779 38 PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKL-------------HHLNNSNTDL 104 (911)
Q Consensus 38 p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L-------------~~L~L~~~~~ 104 (911)
|+.+ ..++|++|++++|.+.++|++|+++++|++|++++|...+.+|..++++++| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 4434 5689999999999999999999999999999999987777899999999887 666666666
Q ss_pred cccCcC
Q 048779 105 LKEMPV 110 (911)
Q Consensus 105 ~~~~p~ 110 (911)
+..+|.
T Consensus 83 l~~lp~ 88 (454)
T 1jl5_A 83 LSSLPE 88 (454)
T ss_dssp CSCCCS
T ss_pred cccCCC
Confidence 444443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.4e-24 Score=243.11 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=81.2
Q ss_pred cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEE
Q 048779 19 FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLN 98 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 98 (911)
..+++++.|++.++.++.+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 446789999999999999886 8889999999999999999876 999999999999995 4556655 99999999999
Q ss_pred cCCCcccccCcCCCCCcccccccc
Q 048779 99 NSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 99 L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
+++|. +..+|. +..+++|++|+
T Consensus 119 L~~n~-l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 119 LFNNQ-ITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp CCSSC-CCCCGG-GTTCTTCSEEE
T ss_pred CCCCC-CCCChH-HcCCCCCCEEE
Confidence 99998 666654 66666666663
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.2e-24 Score=239.52 Aligned_cols=354 Identities=17% Similarity=0.122 Sum_probs=215.3
Q ss_pred ccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhh
Q 048779 10 LAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMG 89 (911)
Q Consensus 10 l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~ 89 (911)
..+..+.++..+++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~ 103 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VT 103 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CT
T ss_pred cCcccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cC
Confidence 44455667888999999999999999887 5889999999999999999886 8899999999999954 55564 88
Q ss_pred ccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCC
Q 048779 90 NLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGK 169 (911)
Q Consensus 90 ~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 169 (911)
++++|++|++++|. +..+| ++.+++|++|+...
T Consensus 104 ~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~-------------------------------------------- 136 (457)
T 3bz5_A 104 PLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCAR-------------------------------------------- 136 (457)
T ss_dssp TCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTT--------------------------------------------
T ss_pred CCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCC--------------------------------------------
Confidence 99999999999998 65564 66666666663211
Q ss_pred CCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeC-CCCCCCCcCCCCCCcccEEEEeCCCCCCCCCC
Q 048779 170 KNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYG-GTKFPTWLGDSSFSNLVTLKFEDCGMCTALPS 248 (911)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~ 248 (911)
|... .. .+..+++|+.|++++|. ...++ +. .+++|+.|++++|...+ +|
T Consensus 137 ----------N~l~-------------~l-~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~l~~-l~- 186 (457)
T 3bz5_A 137 ----------NTLT-------------EI-DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNKITE-LD- 186 (457)
T ss_dssp ----------SCCS-------------CC-CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSCCCC-CC-
T ss_pred ----------Cccc-------------ee-ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCccce-ec-
Confidence 1110 00 12334455555555552 22221 22 36778888888776633 44
Q ss_pred CCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccC
Q 048779 249 VGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGT 328 (911)
Q Consensus 249 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 328 (911)
++.+++|+.|++++|. +..++ ...+++|++|+++++. +..+. ...+++|++|++++| .+++.
T Consensus 187 l~~l~~L~~L~l~~N~-l~~~~--------l~~l~~L~~L~Ls~N~-l~~ip-------~~~l~~L~~L~l~~N-~l~~~ 248 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNN-ITKLD--------LNQNIQLTFLDCSSNK-LTEID-------VTPLTQLTYFDCSVN-PLTEL 248 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--------CTTCTTCSEEECCSSC-CSCCC-------CTTCTTCSEEECCSS-CCSCC
T ss_pred cccCCCCCEEECcCCc-CCeec--------cccCCCCCEEECcCCc-ccccC-------ccccCCCCEEEeeCC-cCCCc
Confidence 6677778888887774 33331 1226667777766643 22221 345666666666666 55533
Q ss_pred CCCCCCccceEEEeccCCcccccCCCCccceEEEcCCcchhhhcccccccccccccccCCcccccccchhhcccccCCCC
Q 048779 329 FPKCLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELSVSLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLK 408 (911)
Q Consensus 329 ~~~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (911)
.+..+++|+.|. ++++ +|+.+++++|....... .
T Consensus 249 ~~~~l~~L~~L~---------------------l~~n-----------~L~~L~l~~n~~~~~~~--------------~ 282 (457)
T 3bz5_A 249 DVSTLSKLTTLH---------------------CIQT-----------DLLEIDLTHNTQLIYFQ--------------A 282 (457)
T ss_dssp CCTTCTTCCEEE---------------------CTTC-----------CCSCCCCTTCTTCCEEE--------------C
T ss_pred CHHHCCCCCEEe---------------------ccCC-----------CCCEEECCCCccCCccc--------------c
Confidence 333444444444 3332 23344444444222111 0
Q ss_pred CCCCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEecccccc
Q 048779 409 PRIPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVK 488 (911)
Q Consensus 409 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 488 (911)
..+++|+.|++.+|...+.+ + ...++|+.|++++| ++|++|++++|....
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l---~----~~~~~L~~L~l~~~----------------------~~L~~L~L~~N~l~~- 332 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLL---D----CQAAGITELDLSQN----------------------PKLVYLYLNNTELTE- 332 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEE---E----CTTCCCSCCCCTTC----------------------TTCCEEECTTCCCSC-
T ss_pred cccccCCEEECCCCccccee---c----cCCCcceEechhhc----------------------ccCCEEECCCCcccc-
Confidence 12566666666666554443 1 13456666666666 677777777775533
Q ss_pred ccccccCCCCccEEEecCCCCccccCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecC
Q 048779 489 LPQSLLSLSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESC 556 (911)
Q Consensus 489 ~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 556 (911)
++ +..+++|++|++++ +.++.++ .|..|+++++. +... ..+..|+.++++++
T Consensus 333 l~--l~~l~~L~~L~l~~-N~l~~l~------~L~~L~l~~n~-l~g~------~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 333 LD--VSHNTKLKSLSCVN-AHIQDFS------SVGKIPALNNN-FEAE------GQTITMPKETLTNN 384 (457)
T ss_dssp CC--CTTCTTCSEEECCS-SCCCBCT------TGGGSSGGGTS-EEEE------EEEEECCCBCCBTT
T ss_pred cc--cccCCcCcEEECCC-CCCCCcc------ccccccccCCc-EEec------ceeeecCccccccC
Confidence 43 77788888888888 5666543 34444444443 1111 13445666677663
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.1e-24 Score=245.85 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=90.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCC-cCC-hhhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIR-TLP-ESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~-~lp-~~~~~L~~L~~L~l~~~ 78 (911)
.++.+++.++ .+|. +. ++|++|+|++|.++.+ |..|+++++|++|++++|.+. .+| ..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4566777776 4565 43 7899999999999977 778999999999999999886 664 56999999999999997
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCC--CCCccccccc
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVG--IGKLTCLQTL 121 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~--~~~L~~L~~L 121 (911)
......|..|+++++|++|++++|.+.+.+|.. +..+++|++|
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 134 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence 655555788999999999999999844334433 5556665555
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=7.3e-24 Score=239.06 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=54.4
Q ss_pred CCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 43 DLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
.+++|+.|+++++.+..+| .+..+++|++|++++| .+..+|. ++++++|++|++++|. +..++. ++.+++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEEE
Confidence 4667888888888877776 3777888888888885 4555555 7788888888888887 555555 67777777664
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.5e-24 Score=242.06 Aligned_cols=219 Identities=20% Similarity=0.173 Sum_probs=170.3
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
++||+++|++++. | .|..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|++|++++| .
T Consensus 45 ~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~ 117 (457)
T 3bz5_A 45 TSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-K 117 (457)
T ss_dssp CEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-C
T ss_pred CEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-c
Confidence 5799999999964 4 7999999999999999999986 899999999999999999986 899999999999996 5
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN 160 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~ 160 (911)
+..+| ++++++|++|++++|. +..++ ++.+++|++|+........ ..
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~--------------------------~~-- 164 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT--------------------------KL-- 164 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC--------------------------CC--
T ss_pred CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc--------------------------cc--
Confidence 66675 8999999999999999 66664 7888888888532221100 00
Q ss_pred hhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCC
Q 048779 161 AKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDC 240 (911)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~ 240 (911)
.+..+++|+.|++++|.... .+ +..+++|+.|++++|.+..++ +. .+++|+.|++++|
T Consensus 165 ----~~~~l~~L~~L~ls~n~l~~-------------l~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 ----DVTPQTQLTTLDCSFNKITE-------------LD-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFLDCSSN 222 (457)
T ss_dssp ----CCTTCTTCCEEECCSSCCCC-------------CC-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEEECCSS
T ss_pred ----ccccCCcCCEEECCCCccce-------------ec-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEEECcCC
Confidence 15667788888888666521 11 566788999999998887764 33 4899999999999
Q ss_pred CCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEecc
Q 048779 241 GMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFED 292 (911)
Q Consensus 241 ~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (911)
...+ +| ++.+++|++|++++|. +..++. ..+++|+.|.+.+
T Consensus 223 ~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~~--------~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 223 KLTE-ID-VTPLTQLTYFDCSVNP-LTELDV--------STLSKLTTLHCIQ 263 (457)
T ss_dssp CCSC-CC-CTTCTTCSEEECCSSC-CSCCCC--------TTCTTCCEEECTT
T ss_pred cccc-cC-ccccCCCCEEEeeCCc-CCCcCH--------HHCCCCCEEeccC
Confidence 8755 66 7888999999999885 444431 2267777766543
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1e-23 Score=232.33 Aligned_cols=299 Identities=15% Similarity=0.126 Sum_probs=200.3
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~ 78 (911)
++|++++|.++...+..|..+++|++|++++|.++.++ .+|..+++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 46778888877433333577888888888888888774 47788888888888888888775 44788888888888884
Q ss_pred cccccchhh-hhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 79 RRLKKLCAD-MGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 79 ~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
.+..+|.. ++++++|++|++++|. +..++. .+..+++|++|+....... ..
T Consensus 128 -~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~- 180 (390)
T 3o6n_A 128 -DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT------------------------HV- 180 (390)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS------------------------BC-
T ss_pred -ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC------------------------cc-
Confidence 46667655 5788888888888888 445543 5777888887754322111 00
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLK 236 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~ 236 (911)
.+..+++|+.++++++.. ..+...++|+.|+++++.+..+|... +++|+.|+
T Consensus 181 --------~~~~l~~L~~L~l~~n~l----------------~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~ 232 (390)
T 3o6n_A 181 --------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGPV----NVELTILK 232 (390)
T ss_dssp --------CGGGCTTCSEEECCSSCC----------------SEEECCSSCSEEECCSSCCCEEECCC----CSSCCEEE
T ss_pred --------ccccccccceeecccccc----------------cccCCCCcceEEECCCCeeeeccccc----cccccEEE
Confidence 133456677777764443 12233457888888888777665543 67888888
Q ss_pred EeCCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccce
Q 048779 237 FEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRE 316 (911)
Q Consensus 237 L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 316 (911)
+++|... ..+.+..+++|++|++++|. +..+....+.. +++|++|+++++. +..+... ...+++|++
T Consensus 233 l~~n~l~-~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~ 299 (390)
T 3o6n_A 233 LQHNNLT-DTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVK-----MQRLERLYISNNR-LVALNLY-----GQPIPTLKV 299 (390)
T ss_dssp CCSSCCC-CCGGGGGCTTCSEEECCSSC-CCEEESGGGTT-----CSSCCEEECCSSC-CCEEECS-----SSCCTTCCE
T ss_pred CCCCCCc-ccHHHcCCCCccEEECCCCc-CCCcChhHccc-----cccCCEEECCCCc-CcccCcc-----cCCCCCCCE
Confidence 8888764 34677788888888888885 44443333333 7888888888753 3333221 456788888
Q ss_pred eecccCCCcccCCCC---CCCccceEEEeccCCcccccCCCCccceEEEcCCcchh
Q 048779 317 LHILRCSKLRGTFPK---CLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEELS 369 (911)
Q Consensus 317 L~l~~c~~l~~~~~~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 369 (911)
|++++| .++ .+|. .+++|++|++++|......+..+++|+.|++++|....
T Consensus 300 L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 300 LDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred EECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 888887 565 4553 34667777777666554455566677777777666443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.3e-22 Score=219.91 Aligned_cols=100 Identities=20% Similarity=0.371 Sum_probs=77.4
Q ss_pred ccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCccc
Q 048779 16 PKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLH 95 (911)
Q Consensus 16 ~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 95 (911)
..+..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .++.+| .+.++++|+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred ccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 334677889999999998888875 8888999999999998888866 888899999999885 456664 588889999
Q ss_pred EEEcCCCcccccCcCCCCCccccccc
Q 048779 96 HLNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 96 ~L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
+|++++|. +..+|. +..+++|+.|
T Consensus 114 ~L~l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 114 ELYLNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp EEECTTSC-CCCCGG-GTTCTTCCEE
T ss_pred EEECcCCc-ccCchh-hccCCceeEE
Confidence 99998888 555544 4455555444
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2e-22 Score=228.56 Aligned_cols=309 Identities=16% Similarity=0.125 Sum_probs=162.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 79 (911)
.++.++++++ .+|..+. +++++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 3455555565 4555553 4667777777777666 45666777777777777776655 455677777777777764
Q ss_pred ccccchh-hhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
.++.+|. .++++++|++|++++|.+....|..+..+++|++|+.......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------- 141 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----------------------------- 141 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-----------------------------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-----------------------------
Confidence 3555553 3566777777777777633333445666666666643221110
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
...+..+..+++|+.|++++|.....+ ...+..+++|+.|++.++.+..++..... .+++|+.|+++
T Consensus 142 -~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~ 208 (477)
T 2id5_A 142 -YISHRAFSGLNSLEQLTLEKCNLTSIP-----------TEALSHLHGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEIS 208 (477)
T ss_dssp -EECTTSSTTCTTCCEEEEESCCCSSCC-----------HHHHTTCTTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEE
T ss_pred -eeChhhccCCCCCCEEECCCCcCcccC-----------hhHhcccCCCcEEeCCCCcCcEeChhhcc-cCcccceeeCC
Confidence 001112444555555655544432111 11233455566666665555544322111 25566666666
Q ss_pred CCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCcccee
Q 048779 239 DCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLREL 317 (911)
Q Consensus 239 ~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 317 (911)
+|...+.++ ......+|++|++++|. +..++...+.. +++|+.|+++++. +..+... . ...+++|++|
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n~-l~~~~~~-~---~~~l~~L~~L 277 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRH-----LVYLRFLNLSYNP-ISTIEGS-M---LHELLRLQEI 277 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTT-----CTTCCEEECCSSC-CCEECTT-S---CTTCTTCCEE
T ss_pred CCccccccCcccccCccccEEECcCCc-ccccCHHHhcC-----ccccCeeECCCCc-CCccChh-h---ccccccCCEE
Confidence 655555444 22333456666666653 44443322222 5566666666543 2222111 1 3455666666
Q ss_pred ecccCCCcccCCCC---CCCccceEEEeccCCcc---cccCCCCccceEEEcCCcch
Q 048779 318 HILRCSKLRGTFPK---CLPALQMLVIYRCEEFS---VSVTSLPALCNLQINGCEEL 368 (911)
Q Consensus 318 ~l~~c~~l~~~~~~---~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~ 368 (911)
++++| .+++..|. .+++|+.|++++|.... ..+..+++|+.|++++|...
T Consensus 278 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 278 QLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66665 44433332 34555555555553211 13455677777777777643
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.4e-22 Score=228.57 Aligned_cols=130 Identities=17% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEee
Q 048779 640 PSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEI 719 (911)
Q Consensus 640 ~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 719 (911)
++|+.|++++|......+..+..+++|++|++++|......|..+.++++|++|++++|......|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 45666666666555555555666666666666666555555555556666666666655322222333445556666666
Q ss_pred ccccCcccccccccCCCccCcEEeCC-ccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccC
Q 048779 720 YDCKRLEALPKGLHNLKSLQELRIGG-ELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGC 796 (911)
Q Consensus 720 ~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c 796 (911)
++|......|..+.++++|++|++++ .+..++. ..+..+++|++|++++|
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD---------------------------GIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT---------------------------TTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCH---------------------------hHhccCCcccEEEccCC
Confidence 66422222244455555555555555 4444332 45678888888888885
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8e-23 Score=237.75 Aligned_cols=298 Identities=15% Similarity=0.127 Sum_probs=207.8
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 78 (911)
++|++++|.+....+..|..+++|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+|. .|+++++|++|++++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 4678888888754444458889999999999998877 4578899999999999999888864 4788999999999985
Q ss_pred cccccchhh-hhccCcccEEEcCCCcccccCc-CCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 79 RRLKKLCAD-MGNLIKLHHLNNSNTDLLKEMP-VGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 79 ~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
.+..+|.. ++++++|++|++++|. +..++ ..++.+++|+.|+....... ..
T Consensus 134 -~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~- 186 (597)
T 3oja_B 134 -DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT------------------------HV- 186 (597)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS------------------------BC-
T ss_pred -CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC------------------------Cc-
Confidence 46677655 5889999999999998 44444 46888888888854322111 00
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLK 236 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~ 236 (911)
.+..+++|+.|++++|.. ..+...++|+.|+++++.+..+|... .++|+.|+
T Consensus 187 --------~~~~l~~L~~L~l~~n~l----------------~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~ 238 (597)
T 3oja_B 187 --------DLSLIPSLFHANVSYNLL----------------STLAIPIAVEELDASHNSINVVRGPV----NVELTILK 238 (597)
T ss_dssp --------CGGGCTTCSEEECCSSCC----------------SEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEE
T ss_pred --------ChhhhhhhhhhhcccCcc----------------ccccCCchhheeeccCCccccccccc----CCCCCEEE
Confidence 133456677777765443 12233467888888888877766543 57888999
Q ss_pred EeCCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccce
Q 048779 237 FEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRE 316 (911)
Q Consensus 237 L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 316 (911)
+++|...+ .+.++.+++|+.|++++|. +..+....++. +++|+.|+++++. +..+... ...+++|++
T Consensus 239 L~~n~l~~-~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~-----l~~L~~L~Ls~N~-l~~l~~~-----~~~l~~L~~ 305 (597)
T 3oja_B 239 LQHNNLTD-TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVK-----MQRLERLYISNNR-LVALNLY-----GQPIPTLKV 305 (597)
T ss_dssp CCSSCCCC-CGGGGGCTTCSEEECCSSC-CCEEESGGGTT-----CSSCCEEECTTSC-CCEEECS-----SSCCTTCCE
T ss_pred CCCCCCCC-ChhhccCCCCCEEECCCCc-cCCCCHHHhcC-----ccCCCEEECCCCC-CCCCCcc-----cccCCCCcE
Confidence 98887743 4677788889999998886 44443333333 7888888888753 3333221 456888888
Q ss_pred eecccCCCcccCCCC---CCCccceEEEeccCCcccccCCCCccceEEEcCCcch
Q 048779 317 LHILRCSKLRGTFPK---CLPALQMLVIYRCEEFSVSVTSLPALCNLQINGCEEL 368 (911)
Q Consensus 317 L~l~~c~~l~~~~~~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~ 368 (911)
|++++| .++ .+|. .+++|+.|++++|......+..+++|+.|++++|...
T Consensus 306 L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 306 LDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEE
T ss_pred EECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCC
Confidence 888887 565 5553 3566777777766655545556667777777766643
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=225.71 Aligned_cols=242 Identities=19% Similarity=0.129 Sum_probs=159.2
Q ss_pred CCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCC
Q 048779 24 LRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 24 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~ 102 (911)
-+.++.+++.++.+|..+. +++++|+|++|+++.++ ..|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4688999999999998664 68999999999999885 67999999999999997544455788999999999999999
Q ss_pred cccccCcCC-CCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEee
Q 048779 103 DLLKEMPVG-IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTC 181 (911)
Q Consensus 103 ~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 181 (911)
. +..+|.. +..+++|++|+...... ....+..+..+++|+.|++++|.
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i------------------------------~~~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKLDISENKI------------------------------VILLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEEECTTSCC------------------------------CEECTTTTTTCTTCCEEEECCTT
T ss_pred c-CCccCcccccCCCCCCEEECCCCcc------------------------------ccCChhHccccccCCEEECCCCc
Confidence 9 7788875 78899999885332211 01111225666777777776544
Q ss_pred cCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCC-cCCCCCCcccEEEEeCCCCCCCCC-CCCCcCccccee
Q 048779 182 CTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTW-LGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLT 259 (911)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-l~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 259 (911)
.. ......+..+++|+.|++.++.+..+|.. +. .+++|+.|++++|......+ .+..+++|++|+
T Consensus 140 l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 140 LV-----------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CC-----------EECTTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cc-----------eeChhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 31 11233455667777777777776665532 32 26777777777776644333 466667777777
Q ss_pred ccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccC
Q 048779 260 VRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRC 322 (911)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 322 (911)
+++|..+..++..... ..+|++|+++++. +..+... ....+++|++|++++|
T Consensus 207 l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLY------GLNLTSLSITHCN-LTAVPYL----AVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EECCTTCCEECTTTTT------TCCCSEEEEESSC-CCSCCHH----HHTTCTTCCEEECCSS
T ss_pred CCCCccccccCccccc------CccccEEECcCCc-ccccCHH----HhcCccccCeeECCCC
Confidence 7776655554433222 3356666665542 2221110 0244556666666655
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=8.1e-22 Score=213.58 Aligned_cols=301 Identities=17% Similarity=0.217 Sum_probs=143.9
Q ss_pred CCCccEEEecCCCCccccCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCCCCCCCCceee
Q 048779 496 LSSLREIFIGGCNSLVSFPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGVQLPPSLKTLF 575 (911)
Q Consensus 496 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 575 (911)
+++|++|++.+ ..+..++....+++|++|++++|. +..++. + ..+++|++|++++| .++.++....+++|++|+
T Consensus 43 l~~L~~L~l~~-~~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAG-EKVASIQGIEYLTNLEYLNLNGNQ-ITDISP-L--SNLVKLTNLYIGTN-KITDISALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCS-SCCCCCTTGGGCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEE
T ss_pred cccccEEEEeC-CccccchhhhhcCCccEEEccCCc-cccchh-h--hcCCcCCEEEccCC-cccCchHHcCCCcCCEEE
Confidence 44555555555 233444444445555555555553 344433 1 44555555555553 333333333334455555
Q ss_pred cccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhhhccCCCCCCcEEEEcCCCCccc
Q 048779 576 IDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLCVYGCSKLES 655 (911)
Q Consensus 576 l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~ 655 (911)
+++|. ++.+ +. + ..+++|++|++++|..+..+-+ +..+ ++|++|++++|....
T Consensus 117 l~~n~-i~~~--~~-~---------~~l~~L~~L~l~~n~~~~~~~~------------~~~l-~~L~~L~l~~~~~~~- 169 (347)
T 4fmz_A 117 LNEDN-ISDI--SP-L---------ANLTKMYSLNLGANHNLSDLSP------------LSNM-TGLNYLTVTESKVKD- 169 (347)
T ss_dssp CTTSC-CCCC--GG-G---------TTCTTCCEEECTTCTTCCCCGG------------GTTC-TTCCEEECCSSCCCC-
T ss_pred CcCCc-ccCc--hh-h---------ccCCceeEEECCCCCCcccccc------------hhhC-CCCcEEEecCCCcCC-
Confidence 55442 2222 10 1 1122444444444433332100 0111 455555555554222
Q ss_pred hhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccccCC
Q 048779 656 IAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGLHNL 735 (911)
Q Consensus 656 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l 735 (911)
++. +..+++|++|++++|.... ++ .+..+++|+.|++++|. +..++. +..+++|++|++++| .+..++. +..+
T Consensus 170 ~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l 242 (347)
T 4fmz_A 170 VTP-IANLTDLYSLSLNYNQIED-IS-PLASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN-KITDLSP-LANL 242 (347)
T ss_dssp CGG-GGGCTTCSEEECTTSCCCC-CG-GGGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred chh-hccCCCCCEEEccCCcccc-cc-cccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcC
Confidence 222 4455555555555554322 22 14455555555555542 332222 334455555555553 3333333 4444
Q ss_pred CccCcEEeCCccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCCCCCCCCCchhhhccccCc
Q 048779 736 KSLQELRIGGELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTA 815 (911)
Q Consensus 736 ~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 815 (911)
++|++|++ ++|..... ..+..+++|++|++++| .+..++.-
T Consensus 243 ~~L~~L~l----------------------~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~~--------- 283 (347)
T 4fmz_A 243 SQLTWLEI----------------------GTNQISDI------NAVKDLTKLKMLNVGSN--QISDISVL--------- 283 (347)
T ss_dssp TTCCEEEC----------------------CSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGGG---------
T ss_pred CCCCEEEC----------------------CCCccCCC------hhHhcCCCcCEEEccCC--ccCCChhh---------
Confidence 55555554 44433221 12456666666666664 23333221
Q ss_pred CCCCCCcceeeecCCCCcccc-ccccCCCCCcceEecccCCCccccCCCCCcccccceeecCCc
Q 048779 816 LPLPASLTSMWIGDFPNLERL-SSSIVDLQNLTELRLHDCPKLKYFPEKGLPSSLLQLQIWGCP 878 (911)
Q Consensus 816 ~~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 878 (911)
..+++|+.|++++| .+... +..+..+++|++|++++|+ ++.++....+++|++|++++|+
T Consensus 284 -~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 -NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp -GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred -cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 24566777777774 34433 3356777788888888754 6665544446778888887776
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.8e-22 Score=218.29 Aligned_cols=277 Identities=14% Similarity=0.086 Sum_probs=212.6
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
++|++++|.+++..+..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+|.. |.++++|++|++++|
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 5799999999987778999999999999999999988 56789999999999999999999876 699999999999996
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
......|..++++++|++|++++|. +..++ +..+++|+.|+...... .
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n~l------------------------~----- 199 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL------------------------S----- 199 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSSCC------------------------S-----
T ss_pred ccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccccc------------------------c-----
Confidence 5444445679999999999999999 66554 56677777774322110 0
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
.+....+|+.|+++++.....+ ....++|+.|++.++.+...+ ++.. +++|+.|+++
T Consensus 200 ------~~~~~~~L~~L~l~~n~l~~~~--------------~~~~~~L~~L~l~~n~l~~~~-~l~~--l~~L~~L~Ls 256 (390)
T 3o6n_A 200 ------TLAIPIAVEELDASHNSINVVR--------------GPVNVELTILKLQHNNLTDTA-WLLN--YPGLVEVDLS 256 (390)
T ss_dssp ------EEECCSSCSEEECCSSCCCEEE--------------CCCCSSCCEEECCSSCCCCCG-GGGG--CTTCSEEECC
T ss_pred ------ccCCCCcceEEECCCCeeeecc--------------ccccccccEEECCCCCCcccH-HHcC--CCCccEEECC
Confidence 0223356888888765542111 112478999999999887763 4543 8999999999
Q ss_pred CCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCcccee
Q 048779 239 DCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLREL 317 (911)
Q Consensus 239 ~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 317 (911)
+|...+..| .+..+++|++|++++|. +..++..+ ..+++|++|+++++. +..+... ...+++|++|
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------~~l~~L~~L~L~~n~-l~~~~~~-----~~~l~~L~~L 323 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHNH-LLHVERN-----QPQFDRLENL 323 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------SCCTTCCEEECCSSC-CCCCGGG-----HHHHTTCSEE
T ss_pred CCcCCCcChhHccccccCCEEECCCCc-CcccCccc------CCCCCCCEEECCCCc-ceecCcc-----ccccCcCCEE
Confidence 998866555 68889999999999985 55554332 228999999999874 4433222 5678999999
Q ss_pred ecccCCCcccCCCCCCCccceEEEeccCC
Q 048779 318 HILRCSKLRGTFPKCLPALQMLVIYRCEE 346 (911)
Q Consensus 318 ~l~~c~~l~~~~~~~l~~L~~L~l~~~~~ 346 (911)
++++| .++..-...+++|++|++++++.
T Consensus 324 ~L~~N-~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 324 YLDHN-SIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ECCSS-CCCCCCCCTTCCCSEEECCSSCE
T ss_pred ECCCC-ccceeCchhhccCCEEEcCCCCc
Confidence 99998 57634446889999999998764
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=5.2e-22 Score=211.92 Aligned_cols=191 Identities=22% Similarity=0.333 Sum_probs=139.8
Q ss_pred CCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEc
Q 048779 20 KLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNN 99 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L 99 (911)
...++++|+|++|.++.+|..+.++++|++|++++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 34789999999999999999899999999999999999999999999999999999996 46689999999999999999
Q ss_pred CCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEE
Q 048779 100 SNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRW 179 (911)
Q Consensus 100 ~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 179 (911)
++|...+.+|..+....-. ..+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDAS---------------------------------------------GEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC-C---------------------------------------------CCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccch---------------------------------------------hhhccCCCCCEEECcC
Confidence 9988788888876541100 0133445666666666
Q ss_pred eecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCC-CCCCcCcccce
Q 048779 180 TCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHL 258 (911)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 258 (911)
|.... +...+..+++|+.|++++|.+..+|..+.. +++|+.|++++|...+.+| .++.+++|++|
T Consensus 193 n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRS------------LPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCC------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCc------------chHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 55421 222345566667777776666666655543 6667777777766666665 45666666666
Q ss_pred eccccccccccC
Q 048779 259 TVRGMSRVKRLG 270 (911)
Q Consensus 259 ~l~~~~~~~~~~ 270 (911)
++++|.....++
T Consensus 259 ~L~~n~~~~~~p 270 (328)
T 4fcg_A 259 ILKDCSNLLTLP 270 (328)
T ss_dssp ECTTCTTCCBCC
T ss_pred ECCCCCchhhcc
Confidence 666665444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.3e-21 Score=225.54 Aligned_cols=277 Identities=14% Similarity=0.092 Sum_probs=213.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
++|+|++|.+++..|..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. |+++++|++|++++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 5799999999988888999999999999999999988 55679999999999999999999876 699999999999997
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
......|..|+++++|++|++++|. +..++ ++.+++|+.|+...... .
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n~l------------------------~----- 205 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL------------------------S----- 205 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSSCC------------------------S-----
T ss_pred cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccCcc------------------------c-----
Confidence 6555556679999999999999999 66654 55667777764322110 0
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
.+.....|+.|++++|....++ . ...++|+.|++++|.++.. .++.. +++|+.|+++
T Consensus 206 ------~l~~~~~L~~L~ls~n~l~~~~------------~--~~~~~L~~L~L~~n~l~~~-~~l~~--l~~L~~L~Ls 262 (597)
T 3oja_B 206 ------TLAIPIAVEELDASHNSINVVR------------G--PVNVELTILKLQHNNLTDT-AWLLN--YPGLVEVDLS 262 (597)
T ss_dssp ------EEECCTTCSEEECCSSCCCEEE------------C--SCCSCCCEEECCSSCCCCC-GGGGG--CTTCSEEECC
T ss_pred ------cccCCchhheeeccCCcccccc------------c--ccCCCCCEEECCCCCCCCC-hhhcc--CCCCCEEECC
Confidence 1223356788888766542111 0 1136899999999988764 45544 8999999999
Q ss_pred CCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCcccee
Q 048779 239 DCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLREL 317 (911)
Q Consensus 239 ~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 317 (911)
+|...+..| .++.+++|+.|++++|. +..++..+ ..+++|+.|+++++. +..+... ...+++|++|
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L~Ls~N~-l~~i~~~-----~~~l~~L~~L 329 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHNH-LLHVERN-----QPQFDRLENL 329 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------SCCTTCCEEECCSSC-CCCCGGG-----HHHHTTCSEE
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------ccCCCCcEEECCCCC-CCccCcc-----cccCCCCCEE
Confidence 999876666 68899999999999985 55554332 228999999999874 3333222 5779999999
Q ss_pred ecccCCCcccCCCCCCCccceEEEeccCC
Q 048779 318 HILRCSKLRGTFPKCLPALQMLVIYRCEE 346 (911)
Q Consensus 318 ~l~~c~~l~~~~~~~l~~L~~L~l~~~~~ 346 (911)
++++| .+++.-+..+++|+.|++++|+.
T Consensus 330 ~L~~N-~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 330 YLDHN-SIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECCSS-CCCCCCCCTTCCCSEEECCSSCE
T ss_pred ECCCC-CCCCcChhhcCCCCEEEeeCCCC
Confidence 99998 67645456889999999998863
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.3e-20 Score=202.21 Aligned_cols=243 Identities=19% Similarity=0.214 Sum_probs=165.4
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCccccccchhhhhccCcccEEEcCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSN 101 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~ 101 (911)
++++++++++.++.+|..+. ++|++|++++|+++.+|. .|.++++|++|++++|......|..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67888888888888876554 578888888888887765 588888888888888544444467788888888888888
Q ss_pred CcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEee
Q 048779 102 TDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTC 181 (911)
Q Consensus 102 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 181 (911)
|. +..+|..+. ++|++|+...... .......+..+++|+.|+++++.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHENEI------------------------------TKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCSSCC------------------------------CBBCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-CCccChhhc--ccccEEECCCCcc------------------------------cccCHhHhcCCccccEEECCCCc
Confidence 88 667776654 5666664221110 01112225566777788776554
Q ss_pred cCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCC-CCCCcCcccceec
Q 048779 182 CTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLTV 260 (911)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 260 (911)
.. ........+..+++|+.|+++++....+|..+ +++|+.|++++|......+ .+..+++|++|++
T Consensus 157 l~---------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 157 LK---------SSGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CC---------GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CC---------ccCcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 31 01122345667788899999888888887765 4789999999988755444 6778889999999
Q ss_pred cccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcc
Q 048779 261 RGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLR 326 (911)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 326 (911)
++|. +..++...+.. +++|++|+++++. +..+.. ....+++|++|++++| .++
T Consensus 224 s~n~-l~~~~~~~~~~-----l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~i~ 276 (330)
T 1xku_A 224 SFNS-ISAVDNGSLAN-----TPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHNN-NIS 276 (330)
T ss_dssp CSSC-CCEECTTTGGG-----STTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCSS-CCC
T ss_pred CCCc-CceeChhhccC-----CCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCCC-cCC
Confidence 9885 55544433332 7888888888763 332221 2567788888888887 566
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.6e-20 Score=201.71 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=174.7
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSN 101 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~ 101 (911)
++++++++++.++.+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|......|..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 68999999999998887664 68999999999998885 4689999999999998654444477889999999999999
Q ss_pred CcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEee
Q 048779 102 TDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTC 181 (911)
Q Consensus 102 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 181 (911)
|. +..+|..+. ++|++|+...... . ......+..+++|+.|++++|.
T Consensus 112 n~-l~~l~~~~~--~~L~~L~l~~n~i------------------------~------~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 112 NH-LVEIPPNLP--SSLVELRIHDNRI------------------------R------KVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SC-CCSCCSSCC--TTCCEEECCSSCC------------------------C------CCCSGGGSSCSSCCEEECCSCC
T ss_pred Cc-CCccCcccc--ccCCEEECCCCcc------------------------C------ccCHhHhCCCccCCEEECCCCc
Confidence 98 778887665 6777774322211 1 0111225677888888887665
Q ss_pred cCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCC-CCCCcCcccceec
Q 048779 182 CTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALP-SVGQLPSLKHLTV 260 (911)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 260 (911)
... .......+..+ +|+.|+++++....+|..+ .++|+.|++++|......+ .+..+++|++|++
T Consensus 159 l~~---------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 159 LEN---------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CBG---------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred ccc---------CCCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 421 01122344445 8899999999988888765 4789999999998765554 6888999999999
Q ss_pred cccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcc
Q 048779 261 RGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLR 326 (911)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 326 (911)
++|. +..+....+.. +++|++|+++++. +..+.. ....+++|++|++++| .++
T Consensus 225 ~~N~-l~~~~~~~~~~-----l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~l~ 277 (332)
T 2ft3_A 225 GHNQ-IRMIENGSLSF-----LPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHTN-NIT 277 (332)
T ss_dssp CSSC-CCCCCTTGGGG-----CTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCSS-CCC
T ss_pred CCCc-CCcCChhHhhC-----CCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCCC-CCC
Confidence 9985 55554433333 7889999998863 333222 2577888999999987 566
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.3e-21 Score=207.67 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred eeeccCCcccc--cccccccCCCCCCEEEccC-CCCc-cccccccCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecC
Q 048779 2 LLNSRHGYLAH--SILPKLFKLQSLRVFSLRG-YRIS-ELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLV 76 (911)
Q Consensus 2 ~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~ 76 (911)
.|+|++|++++ .+|..|..+++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+|..|.++++|++|+++
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCC
Confidence 57888888887 7888888888888888885 7776 56878888888888888888887 677778888888888888
Q ss_pred CccccccchhhhhccCcccEEEcCCCcccccCcCCCCCcc-cccccc
Q 048779 77 GCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLT-CLQTLC 122 (911)
Q Consensus 77 ~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~-~L~~L~ 122 (911)
+|.....+|..++++++|++|++++|.+.+.+|..++.++ +|+.|+
T Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 8665557788888888888888888885557777777776 666663
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.1e-20 Score=201.75 Aligned_cols=218 Identities=20% Similarity=0.291 Sum_probs=169.2
Q ss_pred CCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 43 DLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 43 ~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
...++++|++++|.++.+|..+.++++|++|++++|. +..+|..++++++|++|++++|. +..+|..++.+++|+.|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 4689999999999999999999999999999999964 55999999999999999999999 669999999999998885
Q ss_pred ceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCC
Q 048779 123 NFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLK 202 (911)
Q Consensus 123 ~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 202 (911)
........ . .+. .+.. ......+.
T Consensus 157 L~~n~~~~-----------------------~-------~p~------~~~~--------------------~~~~~~~~ 180 (328)
T 4fcg_A 157 IRACPELT-----------------------E-------LPE------PLAS--------------------TDASGEHQ 180 (328)
T ss_dssp EEEETTCC-----------------------C-------CCS------CSEE--------------------EC-CCCEE
T ss_pred CCCCCCcc-----------------------c-------cCh------hHhh--------------------ccchhhhc
Confidence 43321100 0 000 0000 01123455
Q ss_pred CCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCC
Q 048779 203 PHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPF 282 (911)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 282 (911)
.+++|+.|++++|.+..+|.++.. +++|+.|++++|...+..+.++.+++|++|++++|.....++..+.. +
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l 252 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------R 252 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------C
T ss_pred cCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------C
Confidence 689999999999999999988765 99999999999998654447889999999999999876665544322 8
Q ss_pred CCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCCCC
Q 048779 283 PCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKC 332 (911)
Q Consensus 283 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 332 (911)
++|++|+++++.....+... +..+++|++|++++|+.. +.+|..
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~-----~~~l~~L~~L~L~~n~~~-~~iP~~ 296 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLD-----IHRLTQLEKLDLRGCVNL-SRLPSL 296 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTT-----GGGCTTCCEEECTTCTTC-CCCCGG
T ss_pred CCCCEEECCCCCchhhcchh-----hhcCCCCCEEeCCCCCch-hhccHH
Confidence 89999999988765544332 678899999999998544 477763
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.1e-20 Score=197.62 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=171.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
++++++++.++ .+|..+. +.+++|++++|.++.++ ..|+++++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46778888776 5666554 57888888888888774 4688888888888888888877 667888888888888884
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCC
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKD 157 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~ 157 (911)
.++.+|..+. ++|++|++++|. +..++. .+..+++|+.|+........
T Consensus 111 -~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------- 159 (330)
T 1xku_A 111 -QLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS--------------------------- 159 (330)
T ss_dssp -CCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---------------------------
T ss_pred -cCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc---------------------------
Confidence 4667776554 688888888888 555554 47778888877543222110
Q ss_pred hhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCC-CCCcCCCCCCcccEEE
Q 048779 158 VGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKF-PTWLGDSSFSNLVTLK 236 (911)
Q Consensus 158 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~~~~~~L~~L~ 236 (911)
.+.....+..+++|+.|+++++....++. .+ .++|+.|++++|.+..+ |.++.. +++|+.|+
T Consensus 160 -~~~~~~~~~~l~~L~~L~l~~n~l~~l~~------------~~--~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~ 222 (330)
T 1xku_A 160 -SGIENGAFQGMKKLSYIRIADTNITTIPQ------------GL--PPSLTELHLDGNKITKVDAASLKG--LNNLAKLG 222 (330)
T ss_dssp -GGBCTTGGGGCTTCCEEECCSSCCCSCCS------------SC--CTTCSEEECTTSCCCEECTGGGTT--CTTCCEEE
T ss_pred -cCcChhhccCCCCcCEEECCCCccccCCc------------cc--cccCCEEECCCCcCCccCHHHhcC--CCCCCEEE
Confidence 00111224555666677666555432211 11 15677777777666554 344433 67777777
Q ss_pred EeCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCC--ccccCCc
Q 048779 237 FEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQ--GVERFPK 313 (911)
Q Consensus 237 L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~ 313 (911)
+++|......+ .+..+++|++|++++|. +..++..+ ..+++|++|+++++. ++.+....... .....+.
T Consensus 223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 223 LSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGL------ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp CCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTT------TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCC
T ss_pred CCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhh------ccCCCcCEEECCCCc-CCccChhhcCCccccccccc
Confidence 77776644333 46666777777777774 44443332 126677777777643 33222111100 0123466
Q ss_pred cceeecccCCCcccCC-C---CCCCccceEEEecc
Q 048779 314 LRELHILRCSKLRGTF-P---KCLPALQMLVIYRC 344 (911)
Q Consensus 314 L~~L~l~~c~~l~~~~-~---~~l~~L~~L~l~~~ 344 (911)
++.|++.+++--...+ | ..+++++.++++++
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccceEeecCcccccccCccccccccceeEEEeccc
Confidence 7777777774321112 2 24556777776654
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=4.5e-20 Score=198.17 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=169.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~ 78 (911)
++++++++.++ .+|..+. ++|++|++++|.++.+ |.+|.++++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46888888887 6777664 6899999999999887 56789999999999999999877 567899999999999985
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcCC-CCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCC
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKD 157 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~ 157 (911)
.++.+|..+. ++|++|++++|. +..+|.. +..+++|+.|+........
T Consensus 113 -~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------- 161 (332)
T 2ft3_A 113 -HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN--------------------------- 161 (332)
T ss_dssp -CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG---------------------------
T ss_pred -cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc---------------------------
Confidence 5667877665 789999999998 6677764 7888888888543332210
Q ss_pred hhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCC-CCcCCCCCCcccEEE
Q 048779 158 VGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFP-TWLGDSSFSNLVTLK 236 (911)
Q Consensus 158 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~l~~~~~~~L~~L~ 236 (911)
.+..+..+..+ +|+.|+++++....++. .+ .++|+.|++++|.+..++ ..+.. +++|+.|+
T Consensus 162 -~~~~~~~~~~l-~L~~L~l~~n~l~~l~~------------~~--~~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~L~ 223 (332)
T 2ft3_A 162 -SGFEPGAFDGL-KLNYLRISEAKLTGIPK------------DL--PETLNELHLDHNKIQAIELEDLLR--YSKLYRLG 223 (332)
T ss_dssp -GGSCTTSSCSC-CCSCCBCCSSBCSSCCS------------SS--CSSCSCCBCCSSCCCCCCTTSSTT--CTTCSCCB
T ss_pred -CCCCcccccCC-ccCEEECcCCCCCccCc------------cc--cCCCCEEECCCCcCCccCHHHhcC--CCCCCEEE
Confidence 00011112333 55555555444322211 11 145666666666655543 33332 56666666
Q ss_pred EeCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCC--ccccCCc
Q 048779 237 FEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQ--GVERFPK 313 (911)
Q Consensus 237 L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~ 313 (911)
+++|......+ .+..+++|++|++++|. +..++..+.. +++|++|+++++. ++......... ....++.
T Consensus 224 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~------l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 224 LGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPD------LKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGG------CTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhc------CccCCEEECCCCC-CCccChhHcccccccccccc
Confidence 66665544333 35566666666666663 4444433221 5666666666543 22222111100 0112456
Q ss_pred cceeecccCCCcc-cCCC---CCCCccceEEEecc
Q 048779 314 LRELHILRCSKLR-GTFP---KCLPALQMLVIYRC 344 (911)
Q Consensus 314 L~~L~l~~c~~l~-~~~~---~~l~~L~~L~l~~~ 344 (911)
|+.|++.+++-.. ...| ..+++|+.++++++
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6777777664221 1222 24556666666554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=1.4e-20 Score=199.68 Aligned_cols=222 Identities=19% Similarity=0.212 Sum_probs=179.2
Q ss_pred CeeeccC-CcccccccccccCCCCCCEEEccCCCCc-cccccccCCCCCCeEEccCCCCC-cCChhhhcCCCccEEecCC
Q 048779 1 MLLNSRH-GYLAHSILPKLFKLQSLRVFSLRGYRIS-ELPDSVGDLRYLRHLNLSGTEIR-TLPESVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~L~~L~~L~l~~ 77 (911)
++|++++ |++.+.+|..|..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 5799995 9999999999999999999999999998 77999999999999999999999 7889999999999999999
Q ss_pred ccccccchhhhhccC-cccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 78 CRRLKKLCADMGNLI-KLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
|.....+|..+++++ +|++|++++|.+.+.+|..+..++ |+.|+.....
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~----------------------------- 208 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM----------------------------- 208 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-----------------------------
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-----------------------------
Confidence 766568999999998 999999999996668888888876 7777432211
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCC-CCCCCcCCCCCCcccEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGT-KFPTWLGDSSFSNLVTL 235 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~l~~~~~~~L~~L 235 (911)
..+..+..+..+++|+.|++++|... .....+..+++|++|++++|.+. .+|.++.. +++|+.|
T Consensus 209 -l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L 273 (313)
T 1ogq_A 209 -LEGDASVLFGSDKNTQKIHLAKNSLA------------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSL 273 (313)
T ss_dssp -EEECCGGGCCTTSCCSEEECCSSEEC------------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGG--CTTCCEE
T ss_pred -ccCcCCHHHhcCCCCCEEECCCCcee------------eecCcccccCCCCEEECcCCcccCcCChHHhc--CcCCCEE
Confidence 11112334677788888888866552 11222456788888888888877 57777765 8888888
Q ss_pred EEeCCCCCCCCCCCCCcCcccceecccccccc
Q 048779 236 KFEDCGMCTALPSVGQLPSLKHLTVRGMSRVK 267 (911)
Q Consensus 236 ~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 267 (911)
++++|...+.+|..+.+++|+.+++++|+.+.
T Consensus 274 ~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp ECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred ECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 88888887778877888888888888887544
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=6.1e-21 Score=223.13 Aligned_cols=376 Identities=12% Similarity=0.076 Sum_probs=178.6
Q ss_pred CCCcceEEeccCCCcchhcccccchhhc-cCC-CCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEecccccc
Q 048779 411 IPKLEELGINNIKNETCIWKSHTELLQD-ICS-LKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVK 488 (911)
Q Consensus 411 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 488 (911)
+++|++|++.++..... ....+.. +++ |++|++.+|..+.. ......... .++|++|++++|.....
T Consensus 111 ~~~L~~L~L~~~~i~~~----~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~----~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDL----DLDRLAKARADDLETLKLDKCSGFTT---DGLLSIVTH----CRKIKTLLMEESSFSEK 179 (592)
T ss_dssp CTTCCEEEEESCBCCHH----HHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHHHH----CTTCSEEECTTCEEECC
T ss_pred CCCCCeEEeeccEecHH----HHHHHHHhccccCcEEECcCCCCcCH---HHHHHHHhh----CCCCCEEECccccccCc
Confidence 56666666666532211 1112222 333 77777777753321 111111112 26777777777754322
Q ss_pred ----ccccccCCCCccEEEecCCCCcccc-----CC-CCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCC
Q 048779 489 ----LPQSLLSLSSLREIFIGGCNSLVSF-----PE-VALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHS 558 (911)
Q Consensus 489 ----~~~~l~~l~~L~~L~l~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 558 (911)
++.....+++|++|+++++ .+..+ +. ...+++|++|++++|. +..++..+ ..+++|++|+++++..
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE 255 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred chhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence 2233445777888877773 33311 11 1235778888888776 44455433 5678888888875332
Q ss_pred Cccc----cCCCCCCCCceeecccCCCcccccccccccccCCccccccccccceEeeecCCCccccccCCCCchhhhhhh
Q 048779 559 LRYI----AGVQLPPSLKTLFIDECGNIRTLTVEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNELPATLESLE 634 (911)
Q Consensus 559 l~~~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~~~~l~ 634 (911)
.... .....+++|+.+.+.++. ...+ +..+ ..+++|++|++++|. ++.. .+..+
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l--~~~~---------~~~~~L~~L~Ls~~~-l~~~--------~~~~~- 313 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM--PILF---------PFAAQIRKLDLLYAL-LETE--------DHCTL- 313 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCC-TTTG--GGGG---------GGGGGCCEEEETTCC-CCHH--------HHHHH-
T ss_pred ccchHHHHHHhhccccccccCccccc-hhHH--HHHH---------hhcCCCcEEecCCCc-CCHH--------HHHHH-
Confidence 2111 112344567777766542 1111 1111 124577777777766 4320 00000
Q ss_pred ccCCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecc----------cccccc--cccccccCCCcceEEeccCcccc
Q 048779 635 VGNLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDF----------CEKLKI--LPSGLHNLRQLLEIKIWWCGNLV 702 (911)
Q Consensus 635 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~----------~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~ 702 (911)
+..+ ++|++|++.++-.-..++.....+++|++|++++ |..+.. ++.....+++|++|+++.+ .++
T Consensus 314 ~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~ 391 (592)
T 3ogk_B 314 IQKC-PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DIT 391 (592)
T ss_dssp HTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCC
T ss_pred HHhC-cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-Ccc
Confidence 1122 6677777764333333444445666677777763 444432 1212234666677766333 332
Q ss_pred c-cCCCCC-CCCCccEEeecc---ccCcccccc------cccCCCccCcEEeCCccCccccCCCCCCCCCceEEecccc-
Q 048779 703 T-FPEGGL-PCAKLTRLEIYD---CKRLEALPK------GLHNLKSLQELRIGGELPSLEEDDGLPTDLRSLEIIFNTK- 770 (911)
Q Consensus 703 ~-~~~~~~-~~~~L~~L~l~~---c~~l~~~~~------~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~- 770 (911)
. .+..+. .+++|+.|++++ |+.++..|. .+.++++|++|+ +++|..
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~----------------------L~~~~~~ 449 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA----------------------FYLRQGG 449 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE----------------------EECCGGG
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE----------------------EecCCCC
Confidence 2 111122 255666666653 444443221 133344444444 444332
Q ss_pred hhhhhhhcCcccCCCCCccEEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCccc--cccccCCCCCcce
Q 048779 771 IWKSMIERGQGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLER--LSSSIVDLQNLTE 848 (911)
Q Consensus 771 l~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~ 848 (911)
+...... .....+++|++|++++|.-.-..++. ....+++|+.|++++|+ +.. ++..+..+++|++
T Consensus 450 l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~---------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 450 LTDLGLS--YIGQYSPNVRWMLLGYVGESDEGLME---------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCHHHHH--HHHHSCTTCCEEEECSCCSSHHHHHH---------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCE
T ss_pred ccHHHHH--HHHHhCccceEeeccCCCCCHHHHHH---------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCe
Confidence 1111110 11233555666666654200001111 11234566666666654 332 3333456677778
Q ss_pred EecccCCCcccc
Q 048779 849 LRLHDCPKLKYF 860 (911)
Q Consensus 849 L~l~~c~~l~~l 860 (911)
|++++|+ ++..
T Consensus 518 L~ls~n~-it~~ 528 (592)
T 3ogk_B 518 LWVQGYR-ASMT 528 (592)
T ss_dssp EEEESCB-CCTT
T ss_pred eECcCCc-CCHH
Confidence 8887765 4443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=8.6e-20 Score=213.35 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred hhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccc---
Q 048779 436 LQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVS--- 512 (911)
Q Consensus 436 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~--- 512 (911)
...+++|++|+++++. ++.+........+... ++|++|++++|.. ..++..+..+++|++|.++++.....
T Consensus 188 ~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~----~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTE-FAKISPKDLETIARNC----RSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHC----TTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HhcCCCccEEEeeccC-CCccCHHHHHHHHhhC----CCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHH
Confidence 4455666666665552 2222222222222222 6666666666543 33555566667777777765322211
Q ss_pred -cCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCC
Q 048779 513 -FPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCH 557 (911)
Q Consensus 513 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 557 (911)
......+++|+.++++++. ...++... ..+++|++|++++|.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC
T ss_pred HHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc
Confidence 1122335566666666543 22333322 456666666666654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=190.72 Aligned_cols=116 Identities=26% Similarity=0.273 Sum_probs=90.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccc-cccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 79 (911)
+.|.++++++ .+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..|.++++|++|++++|
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 4577888887 5677665 488999999999888854 7888999999999999888774 55888899999999885
Q ss_pred ccccchhh-hhccCcccEEEcCCCcccccCcC--CCCCcccccccc
Q 048779 80 RLKKLCAD-MGNLIKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLC 122 (911)
Q Consensus 80 ~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~ 122 (911)
.++.+|.. ++++++|++|++++|. +..+|. .+..+++|++|+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEE
Confidence 45566654 7889999999999888 667776 466666666664
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.5e-18 Score=196.11 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCC
Q 048779 205 KNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPC 284 (911)
Q Consensus 205 ~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (911)
++|+.|++.+|.++.+|. .+++|+.|++++|... .+|. .+++|+.|++++|. +..++. .+++
T Consensus 161 ~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~l~-~l~~--~~~~L~~L~L~~N~-l~~l~~---------~~~~ 222 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQLA-SLPT--LPSELYKLWAYNNR-LTSLPA---------LPSG 222 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CSSCCC---------CCTT
T ss_pred CCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCCCC-CCCC--ccchhhEEECcCCc-ccccCC---------CCCC
Confidence 567777777777776662 2677777887777653 3443 23677777777774 333321 1466
Q ss_pred cceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCCCCCCccceEEEeccCCc--ccccCCCCccceEEE
Q 048779 285 LETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKCLPALQMLVIYRCEEF--SVSVTSLPALCNLQI 362 (911)
Q Consensus 285 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~~~~~l--~~~~~~l~~L~~L~l 362 (911)
|+.|+++++. ++.+. ..+++|++|++++| .++ .+|..+++|+.|++++|... ...+..+++|+.|++
T Consensus 223 L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~-~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 223 LKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred CCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCC-cCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 7777776642 32211 33566777777766 565 56655666666666665422 222334555555555
Q ss_pred cCCcch
Q 048779 363 NGCEEL 368 (911)
Q Consensus 363 ~~~~~~ 368 (911)
++|...
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 555543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.6e-18 Score=183.82 Aligned_cols=116 Identities=22% Similarity=0.188 Sum_probs=88.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccc-cccCCCCCCeEEccCCCCCcC---ChhhhcCCCccEEecCC
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIRTL---PESVNKLYNLHTLLLVG 77 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~l~~l---p~~~~~L~~L~~L~l~~ 77 (911)
.++.++++++ .+|..+. ++|++|++++|.++.+|. .|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4677777776 5666554 588888998888888865 468888899999988888755 56677888899999988
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcC--CCCCcccccccc
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLC 122 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~ 122 (911)
| .+..+|..+.++++|++|++++|. +..++. .+..+++|+.|+
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred C-ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEE
Confidence 5 466777778888889999988888 555553 466666666663
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=194.63 Aligned_cols=238 Identities=19% Similarity=0.222 Sum_probs=155.0
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 79 (911)
.++.+++.++ .+|..+. +++++|+|++|.++.+ +..|.++++|++|+|++|.++.++ ..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-
Confidence 3566777776 6777775 6899999999999988 578999999999999999999886 56999999999999995
Q ss_pred ccccchh-hhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCC
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKD 157 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~ 157 (911)
.++.+|. .|..+++|++|++++|. +..+|. .+..+++|++|+......
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~----------------------------- 172 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKR----------------------------- 172 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTT-----------------------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCC-----------------------------
Confidence 5666764 58999999999999999 666665 577888888774321100
Q ss_pred hhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEE
Q 048779 158 VGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKF 237 (911)
Q Consensus 158 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L 237 (911)
.... ....+..+++|+.|++++|.+..+|. +. .+++|+.|++
T Consensus 173 l~~i-----------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~-~~--~l~~L~~L~L 214 (440)
T 3zyj_A 173 LSYI-----------------------------------SEGAFEGLSNLRYLNLAMCNLREIPN-LT--PLIKLDELDL 214 (440)
T ss_dssp CCEE-----------------------------------CTTTTTTCSSCCEEECTTSCCSSCCC-CT--TCSSCCEEEC
T ss_pred ccee-----------------------------------CcchhhcccccCeecCCCCcCccccc-cC--CCcccCEEEC
Confidence 0000 01123334455555555555555543 11 2566666666
Q ss_pred eCCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccce
Q 048779 238 EDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRE 316 (911)
Q Consensus 238 ~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 316 (911)
++|......+ .+..+++|++|++++|. +..+....+.. +++|++|+++++. +...... . ...+++|++
T Consensus 215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~L~~L~L~~N~-l~~~~~~-~---~~~l~~L~~ 283 (440)
T 3zyj_A 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDN-----LQSLVEINLAHNN-LTLLPHD-L---FTPLHHLER 283 (440)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTT-----CTTCCEEECTTSC-CCCCCTT-T---TSSCTTCCE
T ss_pred CCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcC-----CCCCCEEECCCCC-CCccChh-H---hccccCCCE
Confidence 6665543333 45566666666666664 44443333222 5666666666642 3322211 1 355677777
Q ss_pred eecccC
Q 048779 317 LHILRC 322 (911)
Q Consensus 317 L~l~~c 322 (911)
|++++|
T Consensus 284 L~L~~N 289 (440)
T 3zyj_A 284 IHLHHN 289 (440)
T ss_dssp EECCSS
T ss_pred EEcCCC
Confidence 777776
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1e-18 Score=196.08 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=96.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 79 (911)
.++.+++.++ .+|..+. +++++|+|++|.++.+ |..|.++++|++|+|++|.|+.++ ..|.++++|++|++++|
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-
Confidence 3566677776 5777665 6899999999999987 778999999999999999999886 66999999999999995
Q ss_pred ccccchh-hhhccCcccEEEcCCCcccccCcC-CCCCcccccccc
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLC 122 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~ 122 (911)
.+..+|. .++++++|++|++++|. +..+|. .+..+++|+.|+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEe
Confidence 4666664 48899999999999999 667766 577888888774
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=5.8e-21 Score=215.88 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=65.8
Q ss_pred eeeccCCccccccccc-ccCCCCCCEEEccCCCCc-----cccccccCCCCCCeEEccCCCCCcC-Chh-hhcCC----C
Q 048779 2 LLNSRHGYLAHSILPK-LFKLQSLRVFSLRGYRIS-----ELPDSVGDLRYLRHLNLSGTEIRTL-PES-VNKLY----N 69 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~~~l~~l-p~~-~~~L~----~ 69 (911)
.||+++|+++...... +..+++|++|++++|.++ .++..+..+++|++|++++|.++.. +.. ...++ +
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 86 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence 5777777776555444 466777777777777766 3456666777777777777776642 222 23344 5
Q ss_pred ccEEecCCccccc----cchhhhhccCcccEEEcCCCc
Q 048779 70 LHTLLLVGCRRLK----KLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 70 L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~L~~~~ 103 (911)
|++|++++|.... .+|..+.++++|++|++++|.
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 7777777764331 446666777777777777776
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=5.6e-18 Score=190.09 Aligned_cols=239 Identities=18% Similarity=0.197 Sum_probs=146.8
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSN 101 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~ 101 (911)
..+.++.++..++.+|..+. ++|++|+|++|+|+.+ |..|.++++|+.|++++|......|..|.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45788899999999987664 6899999999999987 46699999999999999654444457799999999999999
Q ss_pred CcccccCcCC-CCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEe
Q 048779 102 TDLLKEMPVG-IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWT 180 (911)
Q Consensus 102 ~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 180 (911)
|. +..+|.. +..+++|++|+....... ......+..+++|+.|++
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------~~~~~~~~~l~~L~~L~l--- 178 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRNNPIE------------------------------SIPSYAFNRVPSLMRLDL--- 178 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCSCCCC------------------------------EECTTTTTTCTTCCEEEC---
T ss_pred Cc-CCccChhhhcccCCCCEEECCCCCcc------------------------------eeCHhHHhcCCcccEEeC---
Confidence 99 7777765 778888888743222110 000111334444444444
Q ss_pred ecCCCCCCccchhhcccCCCCCCCCCccEEEEeee-CCCCCCC-CcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccce
Q 048779 181 CCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGY-GGTKFPT-WLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHL 258 (911)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~-~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 258 (911)
.++ ....++. .+. .+++|+.|++++|.. ..+|.+..+++|++|
T Consensus 179 --------------------------------~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 179 --------------------------------GELKKLEYISEGAFE--GLFNLKYLNLGMCNI-KDMPNLTPLVGLEEL 223 (452)
T ss_dssp --------------------------------CCCTTCCEECTTTTT--TCTTCCEEECTTSCC-SSCCCCTTCTTCCEE
T ss_pred --------------------------------CCCCCccccChhhcc--CCCCCCEEECCCCcc-cccccccccccccEE
Confidence 432 1222222 121 255666666666554 334555566666666
Q ss_pred eccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCC----CCCC
Q 048779 259 TVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFP----KCLP 334 (911)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~ 334 (911)
++++|. +..+....+.. +++|++|++.++. +....... +..+++|++|++++| .++ .+| ..++
T Consensus 224 ~Ls~N~-l~~~~~~~~~~-----l~~L~~L~L~~n~-l~~~~~~~----~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~ 290 (452)
T 3zyi_A 224 EMSGNH-FPEIRPGSFHG-----LSSLKKLWVMNSQ-VSLIERNA----FDGLASLVELNLAHN-NLS-SLPHDLFTPLR 290 (452)
T ss_dssp ECTTSC-CSEECGGGGTT-----CTTCCEEECTTSC-CCEECTTT----TTTCTTCCEEECCSS-CCS-CCCTTSSTTCT
T ss_pred ECcCCc-CcccCcccccC-----ccCCCEEEeCCCc-CceECHHH----hcCCCCCCEEECCCC-cCC-ccChHHhcccc
Confidence 666664 33333333222 5666666666543 22221111 355677777777776 555 333 2456
Q ss_pred ccceEEEeccC
Q 048779 335 ALQMLVIYRCE 345 (911)
Q Consensus 335 ~L~~L~l~~~~ 345 (911)
+|+.|++++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 77777777654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=9.7e-18 Score=187.43 Aligned_cols=238 Identities=18% Similarity=0.221 Sum_probs=178.0
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccccccc-hhhhhccCcccEEEcC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRRLKKL-CADMGNLIKLHHLNNS 100 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~L~ 100 (911)
..+.++..+..++.+|..+. +++++|+|++|+++.++ ..|.++++|+.|++++|. +..+ +..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECC
Confidence 46789999999999998665 78999999999999886 669999999999999965 5555 4779999999999999
Q ss_pred CCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEE
Q 048779 101 NTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRW 179 (911)
Q Consensus 101 ~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 179 (911)
+|. +..+|. .+..+++|++|+.....
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~---------------------------------------------------- 147 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNP---------------------------------------------------- 147 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCC----------------------------------------------------
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCc----------------------------------------------------
Confidence 999 777776 47777777777432111
Q ss_pred eecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeC-CCCCCC-CcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccc
Q 048779 180 TCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYG-GTKFPT-WLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKH 257 (911)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~-~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 257 (911)
. .......+..+++|+.|++.++. ...++. .+. .+++|+.|++++|.. ..+|.+..+++|++
T Consensus 148 --i-----------~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~--~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~ 211 (440)
T 3zyj_A 148 --I-----------ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE--GLSNLRYLNLAMCNL-REIPNLTPLIKLDE 211 (440)
T ss_dssp --C-----------CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--TCSSCCEEECTTSCC-SSCCCCTTCSSCCE
T ss_pred --c-----------cccCHHHhhhCcccCEeCCCCCCCcceeCcchhh--cccccCeecCCCCcC-ccccccCCCcccCE
Confidence 0 00011234456677777777643 333443 333 489999999999977 57888999999999
Q ss_pred eeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCC----CCC
Q 048779 258 LTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFP----KCL 333 (911)
Q Consensus 258 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l 333 (911)
|++++|. +..+....+.. +++|++|++.++. +..+.... +..+++|++|++++| .++ .+| ..+
T Consensus 212 L~Ls~N~-l~~~~~~~~~~-----l~~L~~L~L~~n~-l~~~~~~~----~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l 278 (440)
T 3zyj_A 212 LDLSGNH-LSAIRPGSFQG-----LMHLQKLWMIQSQ-IQVIERNA----FDNLQSLVEINLAHN-NLT-LLPHDLFTPL 278 (440)
T ss_dssp EECTTSC-CCEECTTTTTT-----CTTCCEEECTTCC-CCEECTTS----STTCTTCCEEECTTS-CCC-CCCTTTTSSC
T ss_pred EECCCCc-cCccChhhhcc-----CccCCEEECCCCc-eeEEChhh----hcCCCCCCEEECCCC-CCC-ccChhHhccc
Confidence 9999995 66665444443 8999999999864 44333221 577899999999998 777 444 356
Q ss_pred CccceEEEeccC
Q 048779 334 PALQMLVIYRCE 345 (911)
Q Consensus 334 ~~L~~L~l~~~~ 345 (911)
++|+.|++++++
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 889999999875
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.9e-20 Score=215.62 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCCCccchhhhhccCCcccEEEecc--------ccccccc-cccc-ccCCCcceEEeccCcccccc-CCCC
Q 048779 640 PSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDF--------CEKLKIL-PSGL-HNLRQLLEIKIWWCGNLVTF-PEGG 708 (911)
Q Consensus 640 ~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~--------~~~l~~~-~~~~-~~l~~L~~L~l~~~~~l~~~-~~~~ 708 (911)
++|++|++.+|..-..++.....+++|++|++++ |..+... ...+ ..+++|++|.++.+ .++.. ...+
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHH
Confidence 5666666666522122233333456666666633 2222211 0011 23566666644332 33221 1111
Q ss_pred -CCCCCccEEeec-----cccCcccccc------cccCCCccCcEEeCCccC--ccccCCCCCCCCCceEEecccchhhh
Q 048779 709 -LPCAKLTRLEIY-----DCKRLEALPK------GLHNLKSLQELRIGGELP--SLEEDDGLPTDLRSLEIIFNTKIWKS 774 (911)
Q Consensus 709 -~~~~~L~~L~l~-----~c~~l~~~~~------~l~~l~~L~~L~l~~~~~--~l~~~~~~~~~L~~L~l~~c~~l~~~ 774 (911)
..+++|+.|+++ +|+.++..|. .+.++++|++|++++.+. .+......+++|++|++++|......
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 135566666666 4555553321 234555666666644111 11111112445555555555532221
Q ss_pred hhhcCcccCCCCCccEEEeccC
Q 048779 775 MIERGQGFHRFSSLRHLSIEGC 796 (911)
Q Consensus 775 ~~~~~~~~~~l~~L~~L~l~~c 796 (911)
+. ....++++|++|++++|
T Consensus 473 ~~---~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 473 MH---HVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HH---HHHHHCTTCCEEEEESC
T ss_pred HH---HHHhcCCCcCEEECcCC
Confidence 11 11134555555555554
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.5e-19 Score=211.56 Aligned_cols=202 Identities=18% Similarity=0.128 Sum_probs=94.5
Q ss_pred CCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCccc-------CCCCCCCccceEEEeccC-Cc-----c
Q 048779 282 FPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRG-------TFPKCLPALQMLVIYRCE-EF-----S 348 (911)
Q Consensus 282 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-------~~~~~l~~L~~L~l~~~~-~l-----~ 348 (911)
+++|++|++.+|..+........ ...+++|++|++++|. +++ .++..+++|++|++++|. .+ .
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 55666666665543333111111 2356666777666663 331 233355566666666654 11 1
Q ss_pred cccCCCCccceEEEcCCcchhh---hcccccccccccccccCCcccccccchhhcccccCCCCCCCCCcceEE-eccCCC
Q 048779 349 VSVTSLPALCNLQINGCEELSV---SLTSLPALCNLQIGRCEELSVSVTSLPALCNLQIGPLKPRIPKLEELG-INNIKN 424 (911)
Q Consensus 349 ~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~ 424 (911)
.....+++|+.|++++|..... .+..+++|+.|+++.+.... ....+..... ....+++|+.+. +.+...
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~-----~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV-RPDVYSGLSV-----ALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC-CHHHHHHHHH-----HHHTCTTCCEEECCBTCCG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc-chhhHHHHHH-----HHhcCCCcccccCCcccch
Confidence 1122357777777777743332 34455666666665554210 0000000000 011255566552 222111
Q ss_pred cchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEe
Q 048779 425 ETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFI 504 (911)
Q Consensus 425 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 504 (911)
. .....+..+++|++|++++|. +.. ......+..+ ++|++|++.+|.....++.....+++|++|++
T Consensus 279 -~----~l~~~~~~~~~L~~L~L~~~~-l~~---~~l~~~~~~~----~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 279 -A----YLPAVYSVCSRLTTLNLSYAT-VQS---YDLVKLLCQC----PKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp -G----GGGGGHHHHTTCCEEECTTCC-CCH---HHHHHHHTTC----TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred -h----hHHHHHHhhCCCCEEEccCCC-CCH---HHHHHHHhcC----CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 0 112234456777777777775 332 1111222222 67777777776221223333334677777777
Q ss_pred cC
Q 048779 505 GG 506 (911)
Q Consensus 505 ~~ 506 (911)
.+
T Consensus 346 ~~ 347 (594)
T 2p1m_B 346 FP 347 (594)
T ss_dssp EC
T ss_pred ec
Confidence 44
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.9e-18 Score=183.17 Aligned_cols=121 Identities=22% Similarity=0.104 Sum_probs=101.6
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc---cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~ 77 (911)
+.|++++|+++...+..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC
Confidence 5799999999854444579999999999999999865 6778889999999999999999998899999999999999
Q ss_pred ccccccch--hhhhccCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 78 CRRLKKLC--ADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 78 ~~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
| .+..++ ..+.++++|++|++++|.+....|..+..+++|++|+
T Consensus 111 n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp S-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred C-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 5 455555 4689999999999999994444455577777777774
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=186.48 Aligned_cols=122 Identities=26% Similarity=0.278 Sum_probs=105.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.||+++|++++..+..|..+++|++|++++|.++.+ |.+|+++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 5799999999977666899999999999999999988 67799999999999999999999866 899999999999995
Q ss_pred cccccchh--hhhccCcccEEEcCCCcccccCc-CCCCCccccccccc
Q 048779 79 RRLKKLCA--DMGNLIKLHHLNNSNTDLLKEMP-VGIGKLTCLQTLCN 123 (911)
Q Consensus 79 ~~~~~lp~--~i~~L~~L~~L~L~~~~~~~~~p-~~~~~L~~L~~L~~ 123 (911)
.++.+|. .++++++|++|++++|..+..++ ..+..+++|++|+.
T Consensus 135 -~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 135 -PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp -CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred -CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 5667776 68999999999999995466664 35777777777743
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=2.5e-17 Score=172.48 Aligned_cols=117 Identities=25% Similarity=0.252 Sum_probs=92.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 79 (911)
+++.+++.++ .+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 5788888887 5566553 68999999999999885 5688999999999999999877 5678999999999999975
Q ss_pred ccccc-hhhhhccCcccEEEcCCCcccccC-cCCCCCcccccccc
Q 048779 80 RLKKL-CADMGNLIKLHHLNNSNTDLLKEM-PVGIGKLTCLQTLC 122 (911)
Q Consensus 80 ~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~-p~~~~~L~~L~~L~ 122 (911)
.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEE
Confidence 46666 6778899999999999998 4444 44566666666663
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=8.8e-20 Score=206.12 Aligned_cols=332 Identities=18% Similarity=0.155 Sum_probs=160.8
Q ss_pred CCCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccc---
Q 048779 411 IPKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLV--- 487 (911)
Q Consensus 411 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--- 487 (911)
+++|++|++.+|......+......+..+++|++|+++++. +..... ......+....++|++|++++|....
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 45666666666654332222234456667788888887763 322111 12222221111268888888776542
Q ss_pred -cccccccCCCCccEEEecCCCCccccCC-------CCCCCCCcEEEeccCCCCCccch----hhhcCCCCCccEEEEec
Q 048779 488 -KLPQSLLSLSSLREIFIGGCNSLVSFPE-------VALPSKLKKIEISECDALKSLPE----AWMCDTNSSLEILYIES 555 (911)
Q Consensus 488 -~~~~~l~~l~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~~~L~~L~l~~ 555 (911)
.++..+..+++|++|+++++. ++.... ....++|++|++++|. +..... ..+ ..+++|++|++++
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l-~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL-RAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH-HHCTTCCEEECCS
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH-hhCCCCCEEECcC
Confidence 456677778888888888853 432211 1113468888888876 443221 111 3467778888777
Q ss_pred CCCCccccCCC-------CCCCCceeecccCCCccccc---ccccccccCCccccccccccceEeeecCCCccccccCCC
Q 048779 556 CHSLRYIAGVQ-------LPPSLKTLFIDECGNIRTLT---VEEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSKNE 625 (911)
Q Consensus 556 c~~l~~~~~~~-------~~~~L~~L~l~~c~~l~~l~---~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~ 625 (911)
|. +....... ..++|+.|++++|. ++... .+..+. .+
T Consensus 180 n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~---------~~---------------------- 226 (461)
T 1z7x_W 180 ND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVA---------SK---------------------- 226 (461)
T ss_dssp SB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHH---------HC----------------------
T ss_pred CC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHH---------hC----------------------
Confidence 54 43321111 12356666666663 22210 011110 12
Q ss_pred CchhhhhhhccCCCCCCcEEEEcCCCCccc----h-hhhhccCCcccEEEecccccccc----cccccccCCCcceEEec
Q 048779 626 LPATLESLEVGNLPPSLKSLCVYGCSKLES----I-AERLDDNTSLKIIRIDFCEKLKI----LPSGLHNLRQLLEIKIW 696 (911)
Q Consensus 626 ~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~----~-~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~ 696 (911)
++|++|++++|..... + +.....+++|++|++++|..... ++..+.++++|++|+++
T Consensus 227 --------------~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 227 --------------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp --------------TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred --------------CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 4444444444432211 1 11112345555555555432221 33344445555555555
Q ss_pred cCccccc----cCCC-CCCCCCccEEeeccccCccc----ccccccCCCccCcEEeCC-ccCcc-----ccC-CCCCCCC
Q 048779 697 WCGNLVT----FPEG-GLPCAKLTRLEIYDCKRLEA----LPKGLHNLKSLQELRIGG-ELPSL-----EED-DGLPTDL 760 (911)
Q Consensus 697 ~~~~l~~----~~~~-~~~~~~L~~L~l~~c~~l~~----~~~~l~~l~~L~~L~l~~-~~~~l-----~~~-~~~~~~L 760 (911)
+|..-.. +... ....++|++|++++|..-.. ++..+..+++|++|++++ .+... ... ....++|
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence 5532111 1111 11223556666665532211 233445556666666665 33221 110 1124577
Q ss_pred CceEEecccchhhhhhhcCcccCCCCCccEEEeccC
Q 048779 761 RSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGC 796 (911)
Q Consensus 761 ~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c 796 (911)
++|++++|..........+..+..+++|++|++++|
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 788888886553111111145677888888888886
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.7e-17 Score=173.75 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=142.7
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCC-CCcC-ChhhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTE-IRTL-PESVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~-l~~l-p~~~~~L~~L~~L~l~~ 77 (911)
+.|++++|++++..+..|..+++|++|++++|.++.+ |.+|.++++|++|++++|. ++.+ |..+..+++|++|++++
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 5799999999987778899999999999999999988 7889999999999999997 8888 56799999999999999
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcCC-CCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
|......|..+.++++|++|++++|. +..+|.. ++.+++|++|+...
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~------------------------------- 162 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG------------------------------- 162 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-------------------------------
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCC-------------------------------
Confidence 75444446779999999999999999 6666653 66666666663211
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCC-CCCcCCCCCCcccEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKF-PTWLGDSSFSNLVTL 235 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~l~~~~~~~L~~L 235 (911)
|... ......+..+++|+.|++++|.+..+ |.++.. +++|+.|
T Consensus 163 -----------------------n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L 206 (285)
T 1ozn_A 163 -----------------------NRIS-----------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTL 206 (285)
T ss_dssp -----------------------SCCC-----------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEE
T ss_pred -----------------------Cccc-----------ccCHHHhcCccccCEEECCCCcccccCHhHccC--cccccEe
Confidence 1110 00111234455666666666655543 444443 6677777
Q ss_pred EEeCCCCCCCCC-CCCCcCcccceeccccc
Q 048779 236 KFEDCGMCTALP-SVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 236 ~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 264 (911)
++++|......+ .+..+++|++|++++|+
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 777776543222 35666777777777765
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.4e-18 Score=184.26 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCCCCCEEEccCCCCc-cccccc--cCCCCCCeEEccCCCCCcCChhhhcC-----CCccEEecCCccccccchhhhhcc
Q 048779 20 KLQSLRVFSLRGYRIS-ELPDSV--GDLRYLRHLNLSGTEIRTLPESVNKL-----YNLHTLLLVGCRRLKKLCADMGNL 91 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~L~~~~l~~lp~~~~~L-----~~L~~L~l~~~~~~~~lp~~i~~L 91 (911)
.+++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..+..+ ++|++|++++|......|..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4555555555555554 344443 45555555555555555445444444 555555555533222222445555
Q ss_pred CcccEEEcCCCc
Q 048779 92 IKLHHLNNSNTD 103 (911)
Q Consensus 92 ~~L~~L~L~~~~ 103 (911)
++|++|++++|.
T Consensus 173 ~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 173 PALSTLDLSDNP 184 (312)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 555555555555
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=5.3e-19 Score=188.12 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=173.4
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
+++++.+.+.......+..+++|++|+|++|.++.+ |..|..+++|++|++++|.++.+++ +..+++|++|++++| .
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-Y 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-E
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-c
Confidence 456677777654444456777888888888888877 4678888888888888888886654 888888888888885 3
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN 160 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~ 160 (911)
++.+| ..++|++|++++|. +..++.. .+++|++|+...... ..
T Consensus 92 l~~l~----~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l------------------------------~~ 134 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKI------------------------------TM 134 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCC------------------------------CS
T ss_pred ccccc----CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCC------------------------------CC
Confidence 54444 34788888888888 5555532 245666664322111 01
Q ss_pred hhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCC-CCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeC
Q 048779 161 AKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDML-KPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFED 239 (911)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~ 239 (911)
..+..+..+++|+.|++++|.... .....+ ..+++|+.|++++|.+..+|... .+++|+.|++++
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~ 200 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSS 200 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCE-----------EEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCS
T ss_pred ccchhhhccCCCCEEECCCCCCCc-----------ccHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCC
Confidence 111224556677777776554421 111222 24677888888888777665443 278888888888
Q ss_pred CCCCCCCCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeec
Q 048779 240 CGMCTALPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHI 319 (911)
Q Consensus 240 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 319 (911)
|......+.+..+++|++|++++|. +..++..+. .+++|+.|++++++-...... .. ...+++|+.+++
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~~-~~---~~~~~~L~~l~l 269 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR------FSQNLEHFDLRGNGFHCGTLR-DF---FSKNQRVQTVAK 269 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC------CCTTCCEEECTTCCCBHHHHH-HH---HHTCHHHHHHHH
T ss_pred CcCCcchhhhcccCcccEEECcCCc-ccchhhHhh------cCCCCCEEEccCCCccCcCHH-HH---HhccccceEEEC
Confidence 8775443467778888888888885 555554322 277888888887653212111 11 466788888888
Q ss_pred ccCCCcccCCCCC
Q 048779 320 LRCSKLRGTFPKC 332 (911)
Q Consensus 320 ~~c~~l~~~~~~~ 332 (911)
.+++.+++..|..
T Consensus 270 ~~~~~l~~~~~~~ 282 (317)
T 3o53_A 270 QTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHSSSSCC
T ss_pred CCchhccCCchhc
Confidence 8777777555543
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.8e-16 Score=181.89 Aligned_cols=211 Identities=19% Similarity=0.161 Sum_probs=123.7
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~ 102 (911)
++++|++++|.++.+|..+. ++|++|++++|.|+.+|. .+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 57788888888887776665 678888888888877776 5677888888874 4666665 6777888888877
Q ss_pred cccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeec
Q 048779 103 DLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCC 182 (911)
Q Consensus 103 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 182 (911)
. +..+|. .+++|+.|+ +++|..
T Consensus 112 ~-l~~l~~---~l~~L~~L~------------------------------------------------------L~~N~l 133 (622)
T 3g06_A 112 P-LTHLPA---LPSGLCKLW------------------------------------------------------IFGNQL 133 (622)
T ss_dssp C-CCCCCC---CCTTCCEEE------------------------------------------------------CCSSCC
T ss_pred c-CCCCCC---CCCCcCEEE------------------------------------------------------CCCCCC
Confidence 7 555554 233333331 111111
Q ss_pred CCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceeccc
Q 048779 183 TDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRG 262 (911)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 262 (911)
..++ . .+++|+.|++++|.+..+|.. +++|+.|++++|... .+| ..+++|+.|++++
T Consensus 134 ~~lp------------~---~l~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~-~l~--~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 134 TSLP------------V---LPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLT-SLP--MLPSGLQELSVSD 190 (622)
T ss_dssp SCCC------------C---CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCS-CCC--CCCTTCCEEECCS
T ss_pred CcCC------------C---CCCCCCEEECcCCcCCCcCCc-----cCCCCEEECCCCCCC-CCc--ccCCCCcEEECCC
Confidence 1000 0 125666777777766666542 567888888887763 355 4567788888877
Q ss_pred cccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCcccCCCCCCCccceEEEe
Q 048779 263 MSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKLRGTFPKCLPALQMLVIY 342 (911)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~l~ 342 (911)
|. +..++. .+++|+.|.+.++. +..+ ...+++|++|++++| .++ .+|..+++|+.|+++
T Consensus 191 N~-l~~l~~---------~~~~L~~L~L~~N~-l~~l--------~~~~~~L~~L~Ls~N-~L~-~lp~~l~~L~~L~Ls 249 (622)
T 3g06_A 191 NQ-LASLPT---------LPSELYKLWAYNNR-LTSL--------PALPSGLKELIVSGN-RLT-SLPVLPSELKELMVS 249 (622)
T ss_dssp SC-CSCCCC---------CCTTCCEEECCSSC-CSSC--------CCCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECC
T ss_pred CC-CCCCCC---------ccchhhEEECcCCc-cccc--------CCCCCCCCEEEccCC-ccC-cCCCCCCcCcEEECC
Confidence 74 333321 14566666665542 2211 112355666666655 454 344444444444444
Q ss_pred cc
Q 048779 343 RC 344 (911)
Q Consensus 343 ~~ 344 (911)
+|
T Consensus 250 ~N 251 (622)
T 3g06_A 250 GN 251 (622)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-18 Score=185.72 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=181.8
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
+.||+++|++++..|..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.+|. .++|++|++++|.
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~- 110 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNN- 110 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSC-
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCc-
Confidence 579999999998888899999999999999999997765 9999999999999999987763 4899999999964
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCc-CCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChh
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMP-VGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVG 159 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~ 159 (911)
+..++. ..+++|++|++++|. +..++ ..++.+++|+.|+.......
T Consensus 111 l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------------ 157 (317)
T 3o53_A 111 ISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID------------------------------ 157 (317)
T ss_dssp CSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC------------------------------
T ss_pred cCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC------------------------------
Confidence 555542 347889999999999 55554 46888999998854322111
Q ss_pred hhhhhcc-CCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 160 NAKEAQM-DGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 160 ~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
...+..+ ..+++|+.|++++|.... ......+++|+.|++++|.+..+|..+.. +++|+.|+++
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~L~ 222 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLR 222 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECT
T ss_pred cccHHHHhhccCcCCEEECCCCcCcc-------------cccccccccCCEEECCCCcCCcchhhhcc--cCcccEEECc
Confidence 0011112 356789999988666521 12333478999999999999888777654 8999999999
Q ss_pred CCCCCCCCC-CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCccccccc
Q 048779 239 DCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWI 300 (911)
Q Consensus 239 ~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 300 (911)
+|... .+| .+..+++|+.|++++|+........+... +++|+.+.+.++..+....
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~-----~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-----NQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT-----CHHHHHHHHHHHHHHHSSS
T ss_pred CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc-----cccceEEECCCchhccCCc
Confidence 99875 455 68889999999999997542333333333 7888888888766555543
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1e-16 Score=162.97 Aligned_cols=181 Identities=17% Similarity=0.124 Sum_probs=110.8
Q ss_pred ccccCCCcceEEeccCccccccCC-CCCCCCCccEEeeccccCcccccc-cccCCCccCcEEeCC-ccCccccCCCCCCC
Q 048779 683 GLHNLRQLLEIKIWWCGNLVTFPE-GGLPCAKLTRLEIYDCKRLEALPK-GLHNLKSLQELRIGG-ELPSLEEDDGLPTD 759 (911)
Q Consensus 683 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~-~~~~l~~~~~~~~~ 759 (911)
.+.++++|++|++++|..++.++. .+..+++|++|++++|+.++.++. .+.++++|++|++++ .+..++. ....++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS 128 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence 334444444444444433333333 233444444444444444444432 344444555555544 4444443 333444
Q ss_pred CC---ceEEecccchhhhhhhcCcccCCCCCcc-EEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCccc
Q 048779 760 LR---SLEIIFNTKIWKSMIERGQGFHRFSSLR-HLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLER 835 (911)
Q Consensus 760 L~---~L~l~~c~~l~~~~~~~~~~~~~l~~L~-~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 835 (911)
|+ +|++++|+.+..+++ ..+.++++|+ +|++++| .+..++...+ ..++|+.|+++++..++.
T Consensus 129 L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~n--~l~~i~~~~~---------~~~~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNN--GFTSVQGYAF---------NGTKLDAVYLNKNKYLTV 194 (239)
T ss_dssp CCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCSC--CCCEECTTTT---------TTCEEEEEECTTCTTCCE
T ss_pred cccccEEECCCCcchhhcCc---ccccchhcceeEEEcCCC--CCcccCHhhc---------CCCCCCEEEcCCCCCccc
Confidence 55 777777744444432 4688999999 9999985 3456665432 237899999999656998
Q ss_pred ccc-ccCCC-CCcceEecccCCCccccCCCCCcccccceeecCCchh
Q 048779 836 LSS-SIVDL-QNLTELRLHDCPKLKYFPEKGLPSSLLQLQIWGCPLM 880 (911)
Q Consensus 836 l~~-~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l 880 (911)
++. .+..+ ++|++|++++ ++++.+|.. .+++|+.|++.+++.+
T Consensus 195 i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 876 67888 9999999999 889999875 5789999999998754
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=5.4e-16 Score=160.68 Aligned_cols=115 Identities=27% Similarity=0.391 Sum_probs=70.5
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 79 (911)
.+|+++++++ .+|..+. ++++.|++++|.++.+| .+|.++++|++|++++|.++.+|.. |.++++|++|++++|.
T Consensus 20 ~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 4666777666 4555554 46777777777777664 3566777777777777777766644 5667777777777743
Q ss_pred ccccch-hhhhccCcccEEEcCCCcccccCcC-CCCCccccccc
Q 048779 80 RLKKLC-ADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTL 121 (911)
Q Consensus 80 ~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L 121 (911)
+..+| ..+.++++|++|++++|. +..+|. .+..+++|+.|
T Consensus 97 -l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 97 -LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp -CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred -CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEE
Confidence 44444 345667777777777766 444443 24444444444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.2e-16 Score=166.50 Aligned_cols=218 Identities=19% Similarity=0.095 Sum_probs=141.1
Q ss_pred eccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCcccc
Q 048779 4 NSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 4 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~ 81 (911)
+-+...+. .+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .|.++++|++|++++|...
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34444444 4666554 57889999999888774 478888899999999998887764 5888889999999885433
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhh
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGN 160 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~ 160 (911)
...|..+.++++|++|++++|. +..++. .++.+++|++|+....... ..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~----- 139 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ------------------------SF----- 139 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCC------------------------CC-----
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccc------------------------ee-----
Confidence 3344668888999999998888 555555 5778888887753322111 00
Q ss_pred hhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCcc-EEEEeeeCCCCCCCCcCCCCCCcccEEEEeC
Q 048779 161 AKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLE-QFYICGYGGTKFPTWLGDSSFSNLVTLKFED 239 (911)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~ 239 (911)
..+..+..+++|+.|++++|.....+. ..+..+..++.+. .|+++++.+..++..... ..+|+.|++++
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~ 209 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDT 209 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCS
T ss_pred cCchhhccCCCCCEEECCCCCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCC
Confidence 011225556677777777655421110 0111122223333 677777777766655443 45788888888
Q ss_pred CCCCCCCC-CCCCcCcccceeccccc
Q 048779 240 CGMCTALP-SVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 240 ~~~~~~l~-~l~~l~~L~~L~l~~~~ 264 (911)
|......+ .+..+++|++|++++|+
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CceeecCHhHhcccccccEEEccCCc
Confidence 87643333 35678888888888775
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.6e-16 Score=178.89 Aligned_cols=149 Identities=9% Similarity=0.076 Sum_probs=106.8
Q ss_pred CCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccc-cCCCcceEEeccCccccccCCCCCCCCCccEEe
Q 048779 640 PSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLH-NLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLE 718 (911)
Q Consensus 640 ~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 718 (911)
++|+.|++++|......|..++.+++|++|++++|......|..+. .+++|++|++++|. ++.+|. ...+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEE
Confidence 4566666666665555566677778888888888777666666665 67888888888874 555544 33577888888
Q ss_pred eccccCcccccccccCCCccCcEEeCC-ccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEec
Q 048779 719 IYDCKRLEALPKGLHNLKSLQELRIGG-ELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIE 794 (911)
Q Consensus 719 l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~ 794 (911)
+++| .+..+|..+..+++|++|++++ .+..+|...+.+++|+.|++++|+.....++ ..+..++.|+.+++.
T Consensus 198 Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHHHHH
T ss_pred CCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEEecc
Confidence 8884 6777777788888888888888 7777777667778888888888887643332 346677777777765
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1.4e-16 Score=161.80 Aligned_cols=207 Identities=18% Similarity=0.156 Sum_probs=141.4
Q ss_pred CcccccccccccCCCCCCEEEccCCCCccccc-cccCCCCCCeEEccCCC-CCcCCh-hhhcCCCccEEecCCccccccc
Q 048779 8 GYLAHSILPKLFKLQSLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTE-IRTLPE-SVNKLYNLHTLLLVGCRRLKKL 84 (911)
Q Consensus 8 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~-l~~lp~-~~~~L~~L~~L~l~~~~~~~~l 84 (911)
++++ .+|. +. ++|++|++++|.++.+|. .|.++++|++|++++|+ ++.+|. .|.++++|++|++++|+.++.+
T Consensus 21 ~~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 21 KDIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSCS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cCcc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 3344 5666 54 489999999999999854 78999999999999997 999975 6999999999999986667777
Q ss_pred h-hhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhh
Q 048779 85 C-ADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKE 163 (911)
Q Consensus 85 p-~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 163 (911)
| ..+.++++|++|++++|. +..+|. +..+++|+.|
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L------------------------------------------ 132 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIF------------------------------------------ 132 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSE------------------------------------------
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccc------------------------------------------
Confidence 6 568999999999999999 777876 6666555521
Q ss_pred hccCCCCCccEEEEEEe-ecCCCCCCccchhhcccCCCCCCCCCcc-EEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCC
Q 048779 164 AQMDGKKNLRELLLRWT-CCTDGSSSREAETEMGVLDMLKPHKNLE-QFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCG 241 (911)
Q Consensus 164 ~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~ 241 (911)
+.|++++| ... ......+..+++|+ .|+++++.+..+|..... .++|+.|++++|.
T Consensus 133 ---------~~L~l~~N~~l~-----------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 133 ---------FILEITDNPYMT-----------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNK 190 (239)
T ss_dssp ---------EEEEEESCTTCC-----------EECTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCT
T ss_pred ---------cEEECCCCcchh-----------hcCcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCC
Confidence 22333322 110 00112344566677 777777777666665544 3678888888775
Q ss_pred CCCCCC--CCCCc-CcccceeccccccccccCccccCCCCCCCCCCcceEEeccC
Q 048779 242 MCTALP--SVGQL-PSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDM 293 (911)
Q Consensus 242 ~~~~l~--~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (911)
....++ .+..+ ++|+.|++++|. +..++.. .|++|++|.+.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--------TCTTCSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCc-cccCChh--------HhccCceeeccCc
Confidence 334444 46667 777788777764 4443321 1555555555543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=4.4e-16 Score=161.49 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=79.7
Q ss_pred eccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccccc
Q 048779 4 NSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKK 83 (911)
Q Consensus 4 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~ 83 (911)
++..+.+... .....+++|+.|++++|.++.++. +..+++|++|++++|.++.+ +.+..+++|++|++++|. +..
T Consensus 25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~-l~~ 99 (272)
T 3rfs_A 25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ-LQS 99 (272)
T ss_dssp HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC-CCC
T ss_pred HhcCcccccc--cccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc-cCc
Confidence 3444444432 334677888888888888887764 78888888888888888876 468888888888888864 445
Q ss_pred ch-hhhhccCcccEEEcCCCcccccCcCC-CCCccccccc
Q 048779 84 LC-ADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTL 121 (911)
Q Consensus 84 lp-~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L 121 (911)
+| ..++++++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEE
Confidence 54 447888888888888888 5555543 4555555444
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=3.9e-17 Score=183.96 Aligned_cols=239 Identities=13% Similarity=0.108 Sum_probs=137.3
Q ss_pred CCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCC
Q 048779 23 SLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSN 101 (911)
Q Consensus 23 ~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~ 101 (911)
+|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+++ +..+++|++|++++| .++.+| ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC----CCCCcCEEECcC
Confidence 677777777777655 4566677777777777776665543 666777777777764 344443 226677777777
Q ss_pred CcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEee
Q 048779 102 TDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTC 181 (911)
Q Consensus 102 ~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 181 (911)
|. +..++.. .+++|+.|+...... .+..+..+..+++|+.|++++|.
T Consensus 109 N~-l~~~~~~--~l~~L~~L~L~~N~l------------------------------~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 109 NN-ISRVSCS--RGQGKKNIYLANNKI------------------------------TMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp SC-CCCEEEC--CCSSCEEEECCSSCC------------------------------CSGGGBCGGGGSSEEEEECTTSC
T ss_pred Cc-CCCCCcc--ccCCCCEEECCCCCC------------------------------CCCCchhhcCCCCCCEEECCCCC
Confidence 66 4444432 234555553221111 01111223445566666665444
Q ss_pred cCCCCCCccchhhcccCCCCC-CCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceec
Q 048779 182 CTDGSSSREAETEMGVLDMLK-PHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTV 260 (911)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l 260 (911)
.. ...+..+. .+++|+.|++++|.+..+|... .+++|+.|++++|...+..+.+..+++|+.|++
T Consensus 156 l~-----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 156 ID-----------TVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp CC-----------EEEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CC-----------CcChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence 31 11122222 4577777777777776665433 277888888888877554446777788888888
Q ss_pred cccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCccceeecccCCCc
Q 048779 261 RGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPKLRELHILRCSKL 325 (911)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 325 (911)
++|. +..++..+ ..+++|+.|++.+++-.....+ .. ...++.|+.+++..+..+
T Consensus 222 s~N~-l~~lp~~l------~~l~~L~~L~l~~N~l~c~~~~-~~---~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 222 RNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCGTLR-DF---FSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp TTSC-CCEECTTC------CCCTTCCEEECTTCCBCHHHHH-HH---HTTCHHHHHHHHHHHHHH
T ss_pred cCCc-Ccccchhh------ccCCCCCEEEcCCCCCcCcchH-HH---HHhCCCCcEEeccccccc
Confidence 8875 44554432 1267888888887653312111 11 456778888877644333
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1e-15 Score=159.91 Aligned_cols=99 Identities=25% Similarity=0.268 Sum_probs=52.7
Q ss_pred ccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCccccccchhhhhccCcccE
Q 048779 18 LFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHH 96 (911)
Q Consensus 18 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 96 (911)
+..+++++.++++++.++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++| .+..++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 3445555666666655555554443 45556666666555543 34555666666666653 34444332 45555666
Q ss_pred EEcCCCcccccCcCCCCCccccccc
Q 048779 97 LNNSNTDLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 97 L~L~~~~~~~~~p~~~~~L~~L~~L 121 (911)
|++++|. +..+|..+..+++|+.|
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVL 105 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEE
T ss_pred EECCCCc-CCcCchhhccCCCCCEE
Confidence 6666655 44555544444444444
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=7.1e-16 Score=162.84 Aligned_cols=192 Identities=20% Similarity=0.269 Sum_probs=126.2
Q ss_pred ccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEE
Q 048779 18 LFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHL 97 (911)
Q Consensus 18 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 97 (911)
+..+++|++|++++|.++.+| .+..+++|++|++++|.++.++. +..+++|++|++++|. ++.+| .++++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 356778999999999988887 48889999999999999988876 8889999999999854 66664 68889999999
Q ss_pred EcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEE
Q 048779 98 NNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLL 177 (911)
Q Consensus 98 ~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 177 (911)
++++|. +..++. +..+++|++|+...... .... .+..+++|+.|++
T Consensus 113 ~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l------------------------~~~~--------~l~~l~~L~~L~l 158 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI------------------------TNIS--------PLAGLTNLQYLSI 158 (308)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECCSSCC------------------------CCCG--------GGGGCTTCCEEEC
T ss_pred ECCCCC-CCCchh-hcCCCCCCEEECCCCcc------------------------CcCc--------cccCCCCccEEEc
Confidence 999998 666654 77777777774322111 0000 0334455666666
Q ss_pred EEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccc
Q 048779 178 RWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKH 257 (911)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 257 (911)
++|...+ ...+..+++|+.|++++|.+..++. +. .+++|+.|++++|... .++.+..+++|+.
T Consensus 159 ~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~ 221 (308)
T 1h6u_A 159 GNAQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQIS-DVSPLANTSNLFI 221 (308)
T ss_dssp CSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCC-BCGGGTTCTTCCE
T ss_pred cCCcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccC-ccccccCCCCCCE
Confidence 5443311 1114455666666666666555543 22 2566666666666552 3334556666666
Q ss_pred eeccccc
Q 048779 258 LTVRGMS 264 (911)
Q Consensus 258 L~l~~~~ 264 (911)
|++++|+
T Consensus 222 L~l~~N~ 228 (308)
T 1h6u_A 222 VTLTNQT 228 (308)
T ss_dssp EEEEEEE
T ss_pred EEccCCe
Confidence 6666664
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=1.1e-15 Score=164.77 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=152.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCC-cCCh-hhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIR-TLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~-~lp~-~~~~L~~L~~L~l~~~ 78 (911)
+++-++++++ .+|..+. ++++.|+|++|.|+.+| .+|.++++|++|+|++|++. .+|. .|.++++|+.+...++
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4566777777 6677664 57888888888888885 46788888888888888875 4553 4788888776555544
Q ss_pred cccccch-hhhhccCcccEEEcCCCcccccCcCC-CCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCC
Q 048779 79 RRLKKLC-ADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVK 156 (911)
Q Consensus 79 ~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~ 156 (911)
+.+..+| ..+..+++|++|++++|. +..+|.. +....++..|+....
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~------------------------------ 138 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDN------------------------------ 138 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESC------------------------------
T ss_pred CcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccc------------------------------
Confidence 5666664 557888888888888888 5555542 323333333311000
Q ss_pred ChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCC-CCccEEEEeeeCCCCCCCCcCCCCCCcccEE
Q 048779 157 DVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPH-KNLEQFYICGYGGTKFPTWLGDSSFSNLVTL 235 (911)
Q Consensus 157 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L 235 (911)
.++..+ ....+... ..++.|++++|.+..+|...+. ..+|+.+
T Consensus 139 -------------~~i~~l---------------------~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l 182 (350)
T 4ay9_X 139 -------------INIHTI---------------------ERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDEL 182 (350)
T ss_dssp -------------TTCCEE---------------------CTTSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEE
T ss_pred -------------cccccc---------------------cccchhhcchhhhhhccccccccCCChhhcc--ccchhHH
Confidence 000000 01112222 3577788888888877766554 6789999
Q ss_pred EEeCCCCCCCCC--CCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCCccccCCc
Q 048779 236 KFEDCGMCTALP--SVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQGVERFPK 313 (911)
Q Consensus 236 ~L~~~~~~~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 313 (911)
.+.++...+.+| .+..+++|++|++++|. ++.++.. .|.+|++|.+.++.+++.... ...+++
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~--------~~~~L~~L~~l~~~~l~~lP~------l~~l~~ 247 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSY--------GLENLKKLRARSTYNLKKLPT------LEKLVA 247 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSS--------SCTTCCEEECTTCTTCCCCCC------TTTCCS
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChh--------hhccchHhhhccCCCcCcCCC------chhCcC
Confidence 998877778887 47889999999999885 6655432 166677777666655554432 355666
Q ss_pred cceeeccc
Q 048779 314 LRELHILR 321 (911)
Q Consensus 314 L~~L~l~~ 321 (911)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 66666654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.2e-15 Score=159.20 Aligned_cols=191 Identities=22% Similarity=0.207 Sum_probs=144.4
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~ 79 (911)
+.+++++++++ .+|..+. +++++|+|++|.++.+ |..|..+++|++|++++|.++.+|.. ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN- 87 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-
Confidence 46899999998 6777775 6899999999999987 67899999999999999999988654 88999999999994
Q ss_pred ccccchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCCh
Q 048779 80 RLKKLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDV 158 (911)
Q Consensus 80 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~ 158 (911)
.+..+|..+.++++|++|++++|. +..+|. .|..+++|+.|+....
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-------------------------------- 134 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-------------------------------- 134 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS--------------------------------
T ss_pred cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC--------------------------------
Confidence 677899889999999999999999 667764 4777777777742211
Q ss_pred hhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEe
Q 048779 159 GNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFE 238 (911)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~ 238 (911)
.... .....+..+++|+.|++++|.+..+|..... .+++|+.|+++
T Consensus 135 ----------------------~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~ 180 (290)
T 1p9a_G 135 ----------------------ELKT-----------LPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQ 180 (290)
T ss_dssp ----------------------CCCC-----------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECC
T ss_pred ----------------------CCCc-----------cChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECC
Confidence 1100 0112234556777777777777776654322 37788888888
Q ss_pred CCCCCCCCC-CCCCcCcccceeccccc
Q 048779 239 DCGMCTALP-SVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 239 ~~~~~~~l~-~l~~l~~L~~L~l~~~~ 264 (911)
+|... .+| .+...++|+.+++++|+
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCC
Confidence 87764 444 56667788888888876
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.3e-15 Score=154.74 Aligned_cols=119 Identities=28% Similarity=0.394 Sum_probs=99.6
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccc-cccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPD-SVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 78 (911)
+.|++++|++++..+..|..+++|++|++++|.++.+|. .|.++++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 479999999998777789999999999999999999964 46899999999999999999975 4799999999999996
Q ss_pred cccccc-hhhhhccCcccEEEcCCCcccccCcCC-CCCccccccc
Q 048779 79 RRLKKL-CADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTL 121 (911)
Q Consensus 79 ~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L 121 (911)
. +..+ |..++++++|++|++++|. +..+|.. +..+++|++|
T Consensus 120 ~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 120 Q-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred c-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccccee
Confidence 4 5555 4568999999999999998 6666654 4555555444
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=3.5e-17 Score=176.19 Aligned_cols=248 Identities=20% Similarity=0.180 Sum_probs=147.8
Q ss_pred CeeeccCCcccccccccccCC--CCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCc--CChhhhcCCCccEEecC
Q 048779 1 MLLNSRHGYLAHSILPKLFKL--QSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRT--LPESVNKLYNLHTLLLV 76 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~~~~L~~L~~L~l~ 76 (911)
+.+|++++.+. +..+..+ +.+++|++++|.++..+..+..+++|++|++++|.++. +|..+..+++|++|+++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 35778887776 4555555 78888888888887665556778888888888888763 66678888888888888
Q ss_pred CccccccchhhhhccCcccEEEcCCCcccc--cCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCC
Q 048779 77 GCRRLKKLCADMGNLIKLHHLNNSNTDLLK--EMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLEN 154 (911)
Q Consensus 77 ~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~--~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~ 154 (911)
+|......|..++++++|++|++++|..+. .++..+..+++|++|+
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~-------------------------------- 174 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN-------------------------------- 174 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE--------------------------------
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc--------------------------------
Confidence 875445667778888888888888883233 2343345555555553
Q ss_pred CCChhhhhhhccCCCCCccEEEEEEe-ecCCCCCCccchhhcccCCCCCCCC-CccEEEEeeeC--CC--CCCCCcCCCC
Q 048779 155 VKDVGNAKEAQMDGKKNLRELLLRWT-CCTDGSSSREAETEMGVLDMLKPHK-NLEQFYICGYG--GT--KFPTWLGDSS 228 (911)
Q Consensus 155 ~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~--~~p~~l~~~~ 228 (911)
+++| ... .......+..++ +|+.|+++++. .+ .+|..+..
T Consensus 175 ----------------------l~~~~~l~----------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-- 220 (336)
T 2ast_B 175 ----------------------LSWCFDFT----------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-- 220 (336)
T ss_dssp ----------------------CCCCTTCC----------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--
T ss_pred ----------------------CCCCCCcC----------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--
Confidence 2222 110 000011122234 55555555542 21 12333322
Q ss_pred CCcccEEEEeCCCCCC-C-CCCCCCcCcccceeccccccccccCccccCCCCCCCCCCcceEEeccCcccccccccCCCC
Q 048779 229 FSNLVTLKFEDCGMCT-A-LPSVGQLPSLKHLTVRGMSRVKRLGSEFYGNDSPIPFPCLETLRFEDMQEWEDWIPHGSSQ 306 (911)
Q Consensus 229 ~~~L~~L~L~~~~~~~-~-l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 306 (911)
+++|+.|++++|.... . ++.+..+++|++|++++|..+.......+. .+++|++|++.++ +....
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~~~------ 287 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPDGT------ 287 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCTTC------
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCHHH------
Confidence 6777788887777322 2 335667788888888888633332221222 2788888888876 22211
Q ss_pred ccccC-CccceeecccCCCcccCCCCC
Q 048779 307 GVERF-PKLRELHILRCSKLRGTFPKC 332 (911)
Q Consensus 307 ~~~~~-~~L~~L~l~~c~~l~~~~~~~ 332 (911)
...+ .++..|++++| .+++..|..
T Consensus 288 -~~~l~~~l~~L~l~~n-~l~~~~~~~ 312 (336)
T 2ast_B 288 -LQLLKEALPHLQINCS-HFTTIARPT 312 (336)
T ss_dssp -HHHHHHHSTTSEESCC-CSCCTTCSS
T ss_pred -HHHHHhhCcceEEecc-cCccccCCc
Confidence 2223 33666667655 677666653
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=5.7e-15 Score=153.69 Aligned_cols=200 Identities=19% Similarity=0.140 Sum_probs=121.1
Q ss_pred CCCCCCcEEEEcCCCCccchhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCCCCCCCCCccE
Q 048779 637 NLPPSLKSLCVYGCSKLESIAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTR 716 (911)
Q Consensus 637 ~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 716 (911)
.+|+++++|++++|......+..+.++++|++|++++|......+..+.++++|++|++++|......+..+..+++|++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 35578999999888655544557888899999999988666555567888889999999888533333345677888899
Q ss_pred EeeccccCcccccc-cccCCCccCcEEeCC-ccCc--cccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCcc---
Q 048779 717 LEIYDCKRLEALPK-GLHNLKSLQELRIGG-ELPS--LEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLR--- 789 (911)
Q Consensus 717 L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~-~~~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~--- 789 (911)
|++++| .+..++. .+..+++|++|++++ .+.. ++...+.+++|++|++++|......+ ..+..+++|+
T Consensus 105 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~ 179 (276)
T 2z62_A 105 LVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLN 179 (276)
T ss_dssp EECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCC
T ss_pred EECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccc
Confidence 988885 4555544 577888888888877 5554 34434445566666666655433222 2233333333
Q ss_pred -EEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCcccccc-ccCCCCCcceEeccc
Q 048779 790 -HLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHD 853 (911)
Q Consensus 790 -~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~ 853 (911)
.|++++| .+..++... ....+|+.|++++ +.++.+|. .+..+++|++|++++
T Consensus 180 l~L~ls~n--~l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 180 LSLDLSLN--PMNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEEECCSS--CCCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred eeeecCCC--cccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 5555553 222222221 1122455555555 23555544 234455555555554
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=5.8e-15 Score=152.98 Aligned_cols=116 Identities=28% Similarity=0.456 Sum_probs=96.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 79 (911)
+.|++++|.++. .+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 44 ~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 44 DQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp CEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 468999999874 456889999999999999999876 699999999999999999988754 8999999999999965
Q ss_pred ccccch-hhhhccCcccEEEcCCCcccccCcCC-CCCccccccc
Q 048779 80 RLKKLC-ADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTL 121 (911)
Q Consensus 80 ~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L 121 (911)
+..+| ..++++++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 121 -l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 121 -LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred -CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE
Confidence 55554 558999999999999998 6666654 4556665555
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.1e-15 Score=159.17 Aligned_cols=91 Identities=26% Similarity=0.330 Sum_probs=72.9
Q ss_pred EEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCccc
Q 048779 26 VFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLL 105 (911)
Q Consensus 26 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~ 105 (911)
.+.+..+.++.+. .+.++++|++|++++|.++.+| .+..+++|++|++++| .+..++. +.++++|++|++++|. +
T Consensus 23 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-L 97 (308)
T ss_dssp HHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-C
T ss_pred HHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-C
Confidence 3345566666543 2567899999999999999996 6999999999999996 5667766 9999999999999999 6
Q ss_pred ccCcCCCCCcccccccc
Q 048779 106 KEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 106 ~~~p~~~~~L~~L~~L~ 122 (911)
..++ .+..+++|++|+
T Consensus 98 ~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp SCCG-GGTTCTTCCEEE
T ss_pred CCch-hhcCCCCCCEEE
Confidence 6665 477777777774
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=3.2e-16 Score=166.14 Aligned_cols=198 Identities=14% Similarity=0.064 Sum_probs=103.8
Q ss_pred CCcccEEEeccccccccccccc--ccCCCcceEEeccCccccccCCCCCCC-----CCccEEeeccccCccccc-ccccC
Q 048779 663 NTSLKIIRIDFCEKLKILPSGL--HNLRQLLEIKIWWCGNLVTFPEGGLPC-----AKLTRLEIYDCKRLEALP-KGLHN 734 (911)
Q Consensus 663 l~~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~c~~l~~~~-~~l~~ 734 (911)
+++|++|++++|.....+|..+ ..+++|++|++++|. ++.+|..+..+ ++|++|++++| .+..++ ..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 4444444444444443444333 444444444444442 22223222222 44555555443 223222 34444
Q ss_pred CCccCcEEeCC-ccCc---cccCC--CCCCCCCceEEecccchh--hhhhhcCcccCCCCCccEEEeccCCCCCCCCC-c
Q 048779 735 LKSLQELRIGG-ELPS---LEEDD--GLPTDLRSLEIIFNTKIW--KSMIERGQGFHRFSSLRHLSIEGCDDDMVSFP-P 805 (911)
Q Consensus 735 l~~L~~L~l~~-~~~~---l~~~~--~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~-~ 805 (911)
+++|++|++++ .+.. ++... +.+++|++|++++|.... ..+. ..+.++++|++|++++|. +...+ .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N~--l~~~~~~ 246 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS---ALAAARVQLQGLDLSHNS--LRDAAGA 246 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH---HHHHTTCCCSEEECTTSC--CCSSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH---HHHhcCCCCCEEECCCCc--CCcccch
Confidence 55555555544 2211 11111 334555555555555431 1111 334567888888888752 33222 1
Q ss_pred hhhhccccCcCCCCCCcceeeecCCCCccccccccCCCCCcceEecccCCCccccCCCCCcccccceeecCCch
Q 048779 806 EAEDKRLGTALPLPASLTSMWIGDFPNLERLSSSIVDLQNLTELRLHDCPKLKYFPEKGLPSSLLQLQIWGCPL 879 (911)
Q Consensus 806 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 879 (911)
.. ...+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|....+++|++|++++++.
T Consensus 247 ~~--------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 247 PS--------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SC--------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCTT
T ss_pred hh--------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCCC
Confidence 11 12467888888888 46778887665 8888888888 6788777644577888888887753
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.3e-14 Score=146.54 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=59.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 79 (911)
.+|++++.++ .+|..+. +.++.|+|++|.++.+ +.+|.++++|++|++++|.++.++. .|..+++|++|++++|.
T Consensus 18 ~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 4566666665 4555444 4666666666666655 3456666666666666666665543 35666666666666643
Q ss_pred ccccch-hhhhccCcccEEEcCCCcccccCc
Q 048779 80 RLKKLC-ADMGNLIKLHHLNNSNTDLLKEMP 109 (911)
Q Consensus 80 ~~~~lp-~~i~~L~~L~~L~L~~~~~~~~~p 109 (911)
+..+| ..++.+++|++|++++|. +..+|
T Consensus 95 -l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 123 (251)
T 3m19_A 95 -LASLPLGVFDHLTQLDKLYLGGNQ-LKSLP 123 (251)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred -ccccChhHhcccCCCCEEEcCCCc-CCCcC
Confidence 33333 345666666666666665 44443
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=159.67 Aligned_cols=222 Identities=17% Similarity=0.131 Sum_probs=144.3
Q ss_pred eeeccCCccccccccc---ccCCCCCCEEEccCCCCcc-ccccc--cCCCCCCeEEccCCCCCcC-C----hhhhcCCCc
Q 048779 2 LLNSRHGYLAHSILPK---LFKLQSLRVFSLRGYRISE-LPDSV--GDLRYLRHLNLSGTEIRTL-P----ESVNKLYNL 70 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~L~~~~l~~l-p----~~~~~L~~L 70 (911)
.|+++++.++...... +..+++|++|++++|.++. .|..+ ..+++|++|++++|.++.. | ..+..+++|
T Consensus 68 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L 147 (310)
T 4glp_A 68 RLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL 147 (310)
T ss_dssp EEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC
T ss_pred EEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCC
Confidence 3556666554322221 2334679999999999884 47777 8999999999999998842 2 335679999
Q ss_pred cEEecCCccccccchhhhhccCcccEEEcCCCccccc--CcC--CCCCccccccccceeccCCCCCChhhhhhhhccccc
Q 048779 71 HTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKE--MPV--GIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGT 146 (911)
Q Consensus 71 ~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~--~p~--~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~ 146 (911)
++|++++|......|..++++++|++|++++|.+.+. ++. .+..+++|++|+......
T Consensus 148 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l------------------ 209 (310)
T 4glp_A 148 KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM------------------ 209 (310)
T ss_dssp CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC------------------
T ss_pred CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC------------------
Confidence 9999999765445557789999999999999984432 332 347888888885432211
Q ss_pred eeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCC-CCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcC
Q 048779 147 LKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDG-SSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLG 225 (911)
Q Consensus 147 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~ 225 (911)
.........-+..+++|+.|++++|...+. |. ....+..+++|+.|++++|.++.+|.++
T Consensus 210 ---------~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~- 270 (310)
T 4glp_A 210 ---------ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---------SAPRCMWSSALNSLNLSFAGLEQVPKGL- 270 (310)
T ss_dssp ---------CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---------CCSSCCCCTTCCCEECCSSCCCSCCSCC-
T ss_pred ---------CchHHHHHHHHhcCCCCCEEECCCCCCCccchh---------hHHhccCcCcCCEEECCCCCCCchhhhh-
Confidence 111111111134556777787776655321 10 1112222367888888887777777665
Q ss_pred CCCCCcccEEEEeCCCCCCCCCCCCCcCcccceeccccc
Q 048779 226 DSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 226 ~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 264 (911)
+++|+.|++++|... .+|.+..+++|+.|++++|+
T Consensus 271 ---~~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 ---PAKLRVLDLSSNRLN-RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---CSCCSCEECCSCCCC-SCCCTTSCCCCSCEECSSTT
T ss_pred ---cCCCCEEECCCCcCC-CCchhhhCCCccEEECcCCC
Confidence 367788888777763 44556677777777777775
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=6.3e-14 Score=151.04 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=32.6
Q ss_pred EEEecCCCCccccCCCCCCCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccc
Q 048779 501 EIFIGGCNSLVSFPEVALPSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYI 562 (911)
Q Consensus 501 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 562 (911)
+++.++ ++++.+|. ..+.++++|++++|. ++.++...| .++++|++|+++++...+.+
T Consensus 13 ~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i 70 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVI 70 (350)
T ss_dssp EEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEE
T ss_pred EEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCcc
Confidence 344444 45556653 235566777777665 666665444 56666666666665433333
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.1e-13 Score=141.61 Aligned_cols=119 Identities=29% Similarity=0.354 Sum_probs=99.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 78 (911)
+.|++++|++++..+..|..+++|++|+|++|.++.+ +..|..+++|++|++++|.++.+|. .|..+++|++|++++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 4799999999988888899999999999999999987 5668999999999999999999874 5899999999999995
Q ss_pred cccccchhh-hhccCcccEEEcCCCcccccCcC-CCCCccccccc
Q 048779 79 RRLKKLCAD-MGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTL 121 (911)
Q Consensus 79 ~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L 121 (911)
.++.+|.. ++++++|++|++++|. +..+|. .+..+++|+.|
T Consensus 118 -~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 118 -QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred -cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence 56666654 7999999999999998 666654 24444444433
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=8.6e-14 Score=145.37 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=126.4
Q ss_pred eccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccccc
Q 048779 4 NSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKK 83 (911)
Q Consensus 4 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~ 83 (911)
++..+.+++. ..+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++| .++.
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~ 104 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKD 104 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCC
Confidence 3445555432 234678899999999999998875 8899999999999999999876 999999999999995 4666
Q ss_pred chhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhh
Q 048779 84 LCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKE 163 (911)
Q Consensus 84 lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 163 (911)
+| .++++++|++|++++|. +..++ .+..+++|+.|+
T Consensus 105 ~~-~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~----------------------------------------- 140 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLY----------------------------------------- 140 (291)
T ss_dssp GG-GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEE-----------------------------------------
T ss_pred Ch-hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEE-----------------------------------------
Confidence 65 49999999999999998 55543 355555555553
Q ss_pred hccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCC
Q 048779 164 AQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMC 243 (911)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~ 243 (911)
+++|... ....+..+++|+.|++++|.+..++. +. .+++|+.|++++|..
T Consensus 141 -------------l~~n~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i- 190 (291)
T 1h6t_A 141 -------------LGNNKIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHI- 190 (291)
T ss_dssp -------------CCSSCCC-------------CCGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCC-
T ss_pred -------------ccCCcCC-------------cchhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcC-
Confidence 2222211 00223345566666666666655544 32 367777777777765
Q ss_pred CCCCCCCCcCcccceeccccc
Q 048779 244 TALPSVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 244 ~~l~~l~~l~~L~~L~l~~~~ 264 (911)
..++.+..+++|+.|++++|+
T Consensus 191 ~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 SDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CBCGGGTTCTTCSEEEEEEEE
T ss_pred CCChhhccCCCCCEEECcCCc
Confidence 345666677777777777765
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=149.87 Aligned_cols=202 Identities=13% Similarity=0.043 Sum_probs=107.0
Q ss_pred cccEEEeccccccccccccc--ccCCCcceEEeccCccccccC----CCCCCCCCccEEeeccccCcccccccccCCCcc
Q 048779 665 SLKIIRIDFCEKLKILPSGL--HNLRQLLEIKIWWCGNLVTFP----EGGLPCAKLTRLEIYDCKRLEALPKGLHNLKSL 738 (911)
Q Consensus 665 ~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L 738 (911)
+|++|++++|......|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+.++++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444333 444555555555443222211 012234455555555532222222344455555
Q ss_pred CcEEeCC-ccCc---cccC--CCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCCCCCCCC-Cchhhhcc
Q 048779 739 QELRIGG-ELPS---LEED--DGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCDDDMVSF-PPEAEDKR 811 (911)
Q Consensus 739 ~~L~l~~-~~~~---l~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~-~~~~~~~~ 811 (911)
++|++++ .+.. ++.. .+.+++|++|++++|....... .....+..+++|++|++++|. +... |+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~~l~~L~~L~Ls~N~--l~~~~p~~~~--- 245 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-VCAALAAAGVQPHSLDLSHNS--LRATVNPSAP--- 245 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-HHHHHHHHTCCCSSEECTTSC--CCCCCCSCCS---
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-HHHHHHhcCCCCCEEECCCCC--CCccchhhHH---
Confidence 5555555 3221 1111 1334556666666665432111 000124677888888888753 3333 33221
Q ss_pred ccCcCCCCCCcceeeecCCCCccccccccCCCCCcceEecccCCCccccCCCCCcccccceeecCCch
Q 048779 812 LGTALPLPASLTSMWIGDFPNLERLSSSIVDLQNLTELRLHDCPKLKYFPEKGLPSSLLQLQIWGCPL 879 (911)
Q Consensus 812 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 879 (911)
....+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|....+++|++|++++++.
T Consensus 246 ---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 246 ---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCCC
Confidence 011236888888888 57888887664 7899999988 6788777655578889999888763
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2.7e-15 Score=162.70 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=88.8
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-----ccccCCC-CCCeEEccCCCCCcC-ChhhhcC-----C
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-----DSVGDLR-YLRHLNLSGTEIRTL-PESVNKL-----Y 68 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~L-----~ 68 (911)
|.+++++|++++.+|..+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ +
T Consensus 1 ~~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp CEEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred CccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 67899999999888877777778999999999999774 6788898 999999999999966 4557665 9
Q ss_pred CccEEecCCccccccchhhhh----cc-CcccEEEcCCCcccccCc
Q 048779 69 NLHTLLLVGCRRLKKLCADMG----NL-IKLHHLNNSNTDLLKEMP 109 (911)
Q Consensus 69 ~L~~L~l~~~~~~~~lp~~i~----~L-~~L~~L~L~~~~~~~~~p 109 (911)
+|++|++++|......+..++ .+ ++|++|++++|. ++..+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 999999999765445555444 44 899999999999 55544
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.7e-15 Score=166.21 Aligned_cols=242 Identities=17% Similarity=0.157 Sum_probs=152.8
Q ss_pred cccccccCCCCCCEEEccCCCCcc-----ccccccCCCCCCeEEccCCCCC----cCChhh-------hcCCCccEEecC
Q 048779 13 SILPKLFKLQSLRVFSLRGYRISE-----LPDSVGDLRYLRHLNLSGTEIR----TLPESV-------NKLYNLHTLLLV 76 (911)
Q Consensus 13 ~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~~~l~----~lp~~~-------~~L~~L~~L~l~ 76 (911)
.++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355666778889999999988874 3445778889999999887555 334444 678899999999
Q ss_pred Cccccc----cchhhhhccCcccEEEcCCCccccc----CcCCCCCc---------cccccccceeccCCCCCChhhhhh
Q 048779 77 GCRRLK----KLCADMGNLIKLHHLNNSNTDLLKE----MPVGIGKL---------TCLQTLCNFVVGKDSGSGLPELKL 139 (911)
Q Consensus 77 ~~~~~~----~lp~~i~~L~~L~~L~L~~~~~~~~----~p~~~~~L---------~~L~~L~~~~~~~~~~~~l~~l~~ 139 (911)
+|.... .+|..+.++++|++|++++|.+... ++..+..+ ++|++|+........
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------- 173 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------- 173 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG---------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc---------
Confidence 865443 3677788889999999998883222 22223333 666666432221100
Q ss_pred hhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCC--
Q 048779 140 LMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGG-- 217 (911)
Q Consensus 140 L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-- 217 (911)
.........+..+++|+.|++++|... ...........+..+++|+.|++++|.+
T Consensus 174 -----------------~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 174 -----------------GSMKEWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp -----------------GGHHHHHHHHHHCTTCCEEECCSSCCC------HHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred -----------------HHHHHHHHHHHhCCCcCEEECcCCCCC------HhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 000111123455667888888766541 0000111122566778888888888877
Q ss_pred ---CCCCCCcCCCCCCcccEEEEeCCCCCCC----CC-CC--CCcCcccceeccccccccc-----cCccccCCCCCCCC
Q 048779 218 ---TKFPTWLGDSSFSNLVTLKFEDCGMCTA----LP-SV--GQLPSLKHLTVRGMSRVKR-----LGSEFYGNDSPIPF 282 (911)
Q Consensus 218 ---~~~p~~l~~~~~~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~~~ 282 (911)
..+|.++.. +++|+.|+|++|..... ++ .+ +.+++|++|++++|. +.. ++..+... +
T Consensus 231 ~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~-----l 302 (386)
T 2ca6_A 231 LGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEK-----M 302 (386)
T ss_dssp HHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHH-----C
T ss_pred HHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhc-----C
Confidence 335555544 78899999999886443 23 33 448889999999886 333 33332222 7
Q ss_pred CCcceEEeccCc
Q 048779 283 PCLETLRFEDMQ 294 (911)
Q Consensus 283 ~~L~~L~l~~~~ 294 (911)
++|++|++++++
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 899999998865
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=8.4e-15 Score=157.50 Aligned_cols=199 Identities=13% Similarity=0.138 Sum_probs=105.0
Q ss_pred CCCcEEEEcCCCCccc-hhhhhccCCcccEEEecccccccccccccccCCCcceEEeccCccccc--cCCCCCCCCCccE
Q 048779 640 PSLKSLCVYGCSKLES-IAERLDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVT--FPEGGLPCAKLTR 716 (911)
Q Consensus 640 ~~L~~L~l~~c~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~ 716 (911)
++|++|++++|..... ++..+..+++|++|++++|......+..++.+++|++|++++|..++. ++..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5666666666653322 555566666666666666654444555556666666666666644442 3333445566666
Q ss_pred EeeccccCccc--ccccccCCC-ccCcEEeCCccCccccCCCCCCCCCceEEeccc-chh-hhhhhcCcccCCCCCccEE
Q 048779 717 LEIYDCKRLEA--LPKGLHNLK-SLQELRIGGELPSLEEDDGLPTDLRSLEIIFNT-KIW-KSMIERGQGFHRFSSLRHL 791 (911)
Q Consensus 717 L~l~~c~~l~~--~~~~l~~l~-~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~-~l~-~~~~~~~~~~~~l~~L~~L 791 (911)
|++++|..++. ++..+..++ +|++|++ ++|. .+. ...+ ..+..+++|++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l----------------------~~~~~~~~~~~l~---~~~~~~~~L~~L 227 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNL----------------------SGYRKNLQKSDLS---TLVRRCPNLVHL 227 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEEC----------------------CSCGGGSCHHHHH---HHHHHCTTCSEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEe----------------------CCCcccCCHHHHH---HHHhhCCCCCEE
Confidence 66666544442 333444455 5555555 4553 121 1111 234556666666
Q ss_pred EeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCccccc-cccCCCCCcceEecccCCCccccCCCCC---cc
Q 048779 792 SIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLS-SSIVDLQNLTELRLHDCPKLKYFPEKGL---PS 867 (911)
Q Consensus 792 ~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~ 867 (911)
++++|...-...+.. +..+++|++|++++|..+..-. ..+..+++|++|++++| ++..++ ..
T Consensus 228 ~l~~~~~l~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~ 293 (336)
T 2ast_B 228 DLSDSVMLKNDCFQE---------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKE 293 (336)
T ss_dssp ECTTCTTCCGGGGGG---------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHH
T ss_pred eCCCCCcCCHHHHHH---------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHh
Confidence 666643111111111 1234666666666664222111 14566778888888877 444322 34
Q ss_pred cccceeecCC
Q 048779 868 SLLQLQIWGC 877 (911)
Q Consensus 868 sL~~L~i~~c 877 (911)
+++.|++++|
T Consensus 294 ~l~~L~l~~n 303 (336)
T 2ast_B 294 ALPHLQINCS 303 (336)
T ss_dssp HSTTSEESCC
T ss_pred hCcceEEecc
Confidence 5777777543
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=1.7e-13 Score=136.54 Aligned_cols=127 Identities=24% Similarity=0.265 Sum_probs=93.7
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.|++++|++++..+..|..+++|++|+|++|.++.+ |.+|.++++|++|+|++|+|+.+|.. |..+++|++|++++|
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 4678888888766666777888888888888888876 67788888888888888888888754 677888888888885
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceeccC
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVVGK 128 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~~~ 128 (911)
......|..|.++++|++|++++|. +..++. .+..+++|+.|+......
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 115 KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 4333335667888888888888888 666655 377777777776544433
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2.3e-13 Score=136.64 Aligned_cols=124 Identities=22% Similarity=0.330 Sum_probs=95.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
++|++++|++++..|..|..+++|++|+|++|.++.+| ..|..+++|++|+|++|+|+.+|.. |..+++|++|++++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 46788888888777777888888888888888888775 4567888888888888888877644 678888888888884
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccCcC-CCCCccccccccceec
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEMPV-GIGKLTCLQTLCNFVV 126 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~-~~~~L~~L~~L~~~~~ 126 (911)
.+..+|..+.++++|++|++++|. +..+|. .+..+++|+.|+....
T Consensus 123 -~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 123 -KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp -CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred -cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 566788788888888888888887 666665 4777778877755443
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=3.7e-15 Score=163.49 Aligned_cols=259 Identities=17% Similarity=0.153 Sum_probs=173.3
Q ss_pred CCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCc-----CChhhhcCCCccEEecCCcc--cc-ccchhhh-----
Q 048779 22 QSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRT-----LPESVNKLYNLHTLLLVGCR--RL-KKLCADM----- 88 (911)
Q Consensus 22 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~L~~L~~L~l~~~~--~~-~~lp~~i----- 88 (911)
..|+...+....+..++..+..+++|++|+|++|.++. ++..+..+++|++|++++|. .+ ..+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 34555555555666778888999999999999999884 33457789999999999962 22 3455554
Q ss_pred --hccCcccEEEcCCCcccc----cCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhh
Q 048779 89 --GNLIKLHHLNNSNTDLLK----EMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAK 162 (911)
Q Consensus 89 --~~L~~L~~L~L~~~~~~~----~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~ 162 (911)
.++++|++|++++|.+.. .+|..+..+++|++|+........ .... ..
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~----~~~~----------------------~l 142 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP----QAGA----------------------KI 142 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH----HHHH----------------------HH
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH----HHHH----------------------HH
Confidence 789999999999999443 266678889999999654332210 0000 01
Q ss_pred hhccCCC---------CCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCC------CCCCCcCCC
Q 048779 163 EAQMDGK---------KNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGT------KFPTWLGDS 227 (911)
Q Consensus 163 ~~~l~~~---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~p~~l~~~ 227 (911)
...+..+ ++|+.|++++|...+ ..-......+..+++|+.|++++|.+. ..|.++..
T Consensus 143 ~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~- 214 (386)
T 2ca6_A 143 ARALQELAVNKKAKNAPPLRSIICGRNRLEN-------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY- 214 (386)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEECCSSCCTG-------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-
T ss_pred HHHHHHHhhhhhcccCCCCcEEECCCCCCCc-------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-
Confidence 1112222 789999998776520 000111134556789999999999876 23435543
Q ss_pred CCCcccEEEEeCCCCC----CCCC-CCCCcCcccceeccccccccccC-----ccccCCCCCCCCCCcceEEeccCcccc
Q 048779 228 SFSNLVTLKFEDCGMC----TALP-SVGQLPSLKHLTVRGMSRVKRLG-----SEFYGNDSPIPFPCLETLRFEDMQEWE 297 (911)
Q Consensus 228 ~~~~L~~L~L~~~~~~----~~l~-~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~ 297 (911)
+++|+.|+|++|... ..++ .+..+++|++|++++|. +...+ ..+.. ..+++|++|+++++. +.
T Consensus 215 -~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~----~~~~~L~~L~L~~n~-i~ 287 (386)
T 2ca6_A 215 -CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSK----LENIGLQTLRLQYNE-IE 287 (386)
T ss_dssp -CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHT----CSSCCCCEEECCSSC-CB
T ss_pred -CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhh----ccCCCeEEEECcCCc-CC
Confidence 899999999999863 3444 56788999999999996 43321 11100 127899999999875 33
Q ss_pred c-----ccccCCCCccccCCccceeecccCCCcc
Q 048779 298 D-----WIPHGSSQGVERFPKLRELHILRCSKLR 326 (911)
Q Consensus 298 ~-----~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 326 (911)
. +... . ...+++|++|++++| .++
T Consensus 288 ~~g~~~l~~~-l---~~~l~~L~~L~l~~N-~l~ 316 (386)
T 2ca6_A 288 LDAVRTLKTV-I---DEKMPDLLFLELNGN-RFS 316 (386)
T ss_dssp HHHHHHHHHH-H---HHHCTTCCEEECTTS-BSC
T ss_pred HHHHHHHHHH-H---HhcCCCceEEEccCC-cCC
Confidence 3 2111 1 256899999999998 565
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.3e-13 Score=128.35 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=103.5
Q ss_pred CeeeccCCccc-ccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCc-CChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLA-HSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRT-LPESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~~ 78 (911)
+.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 47899999998 78888889999999999999999988 678999999999999999997 7777888999999999996
Q ss_pred cccccch--hhhhccCcccEEEcCCCcccccCcC----CCCCccccccccc
Q 048779 79 RRLKKLC--ADMGNLIKLHHLNNSNTDLLKEMPV----GIGKLTCLQTLCN 123 (911)
Q Consensus 79 ~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~----~~~~L~~L~~L~~ 123 (911)
. ++.+| ..++.+++|++|++++|. +..+|. .+..+++|+.|+.
T Consensus 99 ~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 99 K-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp C-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred c-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 4 66654 779999999999999998 667765 4778888888753
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=9.5e-14 Score=159.24 Aligned_cols=182 Identities=19% Similarity=0.263 Sum_probs=118.8
Q ss_pred eccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccccc
Q 048779 4 NSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKK 83 (911)
Q Consensus 4 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~ 83 (911)
+++.+.+.... .+..+++|+.|++++|.+..+|. +..+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..
T Consensus 27 ~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKD 101 (605)
T ss_dssp HTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCC
T ss_pred hccCCCccccc--chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCC
Confidence 44555555332 24667778888888888877764 7778888888888888877765 778888888888875 4555
Q ss_pred chhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhh
Q 048779 84 LCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKE 163 (911)
Q Consensus 84 lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 163 (911)
+| .+..+++|++|+|++|. +..++ .+..+++|+.|
T Consensus 102 l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L------------------------------------------ 136 (605)
T 1m9s_A 102 LS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESL------------------------------------------ 136 (605)
T ss_dssp CT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEE------------------------------------------
T ss_pred Ch-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEE------------------------------------------
Confidence 54 57778888888888877 44443 24444444444
Q ss_pred hccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCC
Q 048779 164 AQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMC 243 (911)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~ 243 (911)
+++.|... ....+..+++|+.|++++|.+..++. +. .+++|+.|+|++|..
T Consensus 137 ------------~Ls~N~l~-------------~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i- 187 (605)
T 1m9s_A 137 ------------YLGNNKIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHI- 187 (605)
T ss_dssp ------------ECCSSCCC-------------CCGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCC-
T ss_pred ------------ECCCCccC-------------CchhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCC-
Confidence 33322221 01234455667777777776666544 33 378888888888766
Q ss_pred CCCCCCCCcCcccceeccccc
Q 048779 244 TALPSVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 244 ~~l~~l~~l~~L~~L~l~~~~ 264 (911)
..++.+..+++|+.|++++|.
T Consensus 188 ~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 188 SDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CBCGGGTTCTTCSEEECCSEE
T ss_pred CCChHHccCCCCCEEEccCCc
Confidence 345677778888888888775
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=3.4e-13 Score=140.85 Aligned_cols=164 Identities=20% Similarity=0.280 Sum_probs=111.2
Q ss_pred CCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCCc
Q 048779 24 LRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 24 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~ 103 (911)
+..+.+.++.++.+.. +..+++|++|++++|.++.+| .+..+++|+.|++++| .+..++. ++++++|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc
Confidence 4444566777766533 568999999999999999995 5899999999999995 5666665 9999999999999998
Q ss_pred ccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhhhhhccCCCCCccEEEEEEeecC
Q 048779 104 LLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNAKEAQMDGKKNLRELLLRWTCCT 183 (911)
Q Consensus 104 ~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 183 (911)
+..+|. +..+++|++| ++++|...
T Consensus 102 -l~~~~~-l~~l~~L~~L------------------------------------------------------~L~~n~i~ 125 (291)
T 1h6t_A 102 -VKDLSS-LKDLKKLKSL------------------------------------------------------SLEHNGIS 125 (291)
T ss_dssp -CCCGGG-GTTCTTCCEE------------------------------------------------------ECTTSCCC
T ss_pred -CCCChh-hccCCCCCEE------------------------------------------------------ECCCCcCC
Confidence 555443 5555555544 32222211
Q ss_pred CCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceecccc
Q 048779 184 DGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGM 263 (911)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~ 263 (911)
....+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.... ++.+..+++|++|++++|
T Consensus 126 -------------~~~~l~~l~~L~~L~l~~n~l~~~~-~l~--~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 126 -------------DINGLVHLPQLESLYLGNNKITDIT-VLS--RLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKN 188 (291)
T ss_dssp -------------CCGGGGGCTTCCEEECCSSCCCCCG-GGG--GCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSS
T ss_pred -------------CChhhcCCCCCCEEEccCCcCCcch-hhc--cCCCCCEEEccCCcccc-chhhcCCCccCEEECCCC
Confidence 0122344567777777777766652 232 26777777777776533 333666677777777666
Q ss_pred c
Q 048779 264 S 264 (911)
Q Consensus 264 ~ 264 (911)
.
T Consensus 189 ~ 189 (291)
T 1h6t_A 189 H 189 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=7.3e-14 Score=136.83 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=51.3
Q ss_pred cCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEE
Q 048779 19 FKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLN 98 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~ 98 (911)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.+ +.+..+++|++|++++|......|..++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44556666666666666666 366666666666666655554 3566666666666666543334455566666666666
Q ss_pred cCCCc
Q 048779 99 NSNTD 103 (911)
Q Consensus 99 L~~~~ 103 (911)
+++|.
T Consensus 119 Ls~n~ 123 (197)
T 4ezg_A 119 ISHSA 123 (197)
T ss_dssp CCSSB
T ss_pred ecCCc
Confidence 66666
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=5.8e-13 Score=150.79 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=53.1
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~ 102 (911)
++++|++++|.++.+|..+. ++|++|++++|.|+.+| ..+++|++|++++| .++.+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 66677777776666665442 56777777777666666 34566777777764 3444655 444 6777777776
Q ss_pred cccccCcCCCCCccccccc
Q 048779 103 DLLKEMPVGIGKLTCLQTL 121 (911)
Q Consensus 103 ~~~~~~p~~~~~L~~L~~L 121 (911)
. +..+|. .+++|+.|
T Consensus 131 ~-l~~lp~---~l~~L~~L 145 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYI 145 (571)
T ss_dssp C-CSCCCC---CCTTCCEE
T ss_pred c-CCCCCC---cCccccEE
Confidence 6 555555 34555555
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.4e-13 Score=129.45 Aligned_cols=124 Identities=23% Similarity=0.172 Sum_probs=107.2
Q ss_pred CeeeccCCccc-ccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCc-CChhhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLA-HSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRT-LPESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~~ 78 (911)
+.|++++|+++ +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence 57999999998 67888889999999999999999988 678999999999999999997 7777888999999999996
Q ss_pred cccccch--hhhhccCcccEEEcCCCcccccCcC----CCCCccccccccceecc
Q 048779 79 RRLKKLC--ADMGNLIKLHHLNNSNTDLLKEMPV----GIGKLTCLQTLCNFVVG 127 (911)
Q Consensus 79 ~~~~~lp--~~i~~L~~L~~L~L~~~~~~~~~p~----~~~~L~~L~~L~~~~~~ 127 (911)
.++.+| ..++++++|++|++++|. +..+|. .+..+++|+.|+.....
T Consensus 106 -~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 106 -KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 566665 678999999999999999 777776 68889999998655543
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=1.8e-13 Score=140.56 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCCccEEEEeeeCCCCCCCCcCCCCCCcccEEEEeCCCCCCCCCCCCCcCcccceeccccc
Q 048779 204 HKNLEQFYICGYGGTKFPTWLGDSSFSNLVTLKFEDCGMCTALPSVGQLPSLKHLTVRGMS 264 (911)
Q Consensus 204 ~~~L~~L~l~~~~~~~~p~~l~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 264 (911)
+++|+.|++++|.+..++ .+. .+++|+.|++++|.... ++.+..+++|+.|++++|+
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCB-CTTSTTCCCCCEEEEEEEE
T ss_pred cccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcc-hHHhccCCCCCEEeCCCCc
Confidence 344445555555544443 222 26677777777776533 3566677777777777775
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.1e-12 Score=129.75 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=69.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 79 (911)
.++.+++.++ .+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|+++.+|.. |..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EEEecCCCcc-CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence 3566666665 4454443 47777888777777664 3467777788888877777777644 677777777777774
Q ss_pred ccccchh-hhhccCcccEEEcCCCcccccCcC
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPV 110 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~ 110 (911)
.+..+|. .++++++|++|++++|. +..+|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 117 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPD 117 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCH
Confidence 3445543 36777777777777777 444443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=4.5e-13 Score=133.44 Aligned_cols=123 Identities=16% Similarity=0.173 Sum_probs=72.1
Q ss_pred eeeccCCcccccccc-cccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILP-KLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
.|++++|++++..+. .|..+++|++|+|++|.|+.++ .+|.++++|++|+|++|.++.+|.. |..+++|++|++++|
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 466666666654332 3466666666666666666553 3566666666666666666665433 666666666666664
Q ss_pred cccccchhhhhccCcccEEEcCCCcccccC-cCCCCCcccccccccee
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTDLLKEM-PVGIGKLTCLQTLCNFV 125 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~-p~~~~~L~~L~~L~~~~ 125 (911)
......|..+.++++|++|++++|. +..+ |..+..+++|+.|+...
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 3333334556666666666666666 3333 44566666666664433
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.2e-12 Score=131.33 Aligned_cols=106 Identities=25% Similarity=0.353 Sum_probs=60.2
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 79 (911)
.++.++++++ .+|..+. ++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. |..+++|++|++++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N- 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN- 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-
Confidence 3555555554 4454443 5666666666666655 45566666666666666666666533 566666666666663
Q ss_pred ccccchh-hhhccCcccEEEcCCCcccccCcCCC
Q 048779 80 RLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPVGI 112 (911)
Q Consensus 80 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~~~ 112 (911)
.++.+|. .+..+++|++|++++|. +..+|..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 131 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGI 131 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTG
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCccc
Confidence 3444433 34566666666666666 44444443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=129.99 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=70.3
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc--ccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP--DSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 78 (911)
.+++++|.++ .+|..+. ..+++|+|++|.++.++ ..|..+++|++|++++|.|+.++. .|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5777888776 4666554 35678888888887763 346778888888888888877764 5788888888888885
Q ss_pred cccccchhhhhccCcccEEEcCCCc
Q 048779 79 RRLKKLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 79 ~~~~~lp~~i~~L~~L~~L~L~~~~ 103 (911)
......|..++++++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc
Confidence 4333334457778888888888877
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=6.7e-13 Score=143.55 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=63.1
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-cccc-CCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVG-DLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGC 78 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~-~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~ 78 (911)
++++++++++ .+|..+. ..+++|+|++|.|+.++ ..+. ++++|++|+|++|+|+.++ ..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5666777666 3555553 35677777777777663 3344 6777777777777777665 34677777777777774
Q ss_pred cccccch-hhhhccCcccEEEcCCCc
Q 048779 79 RRLKKLC-ADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 79 ~~~~~lp-~~i~~L~~L~~L~L~~~~ 103 (911)
. +..+| ..|.++++|++|+|++|.
T Consensus 99 ~-l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 99 H-LHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred c-CCcCCHHHhCCCcCCCEEECCCCc
Confidence 3 44444 346677777777777776
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.8e-12 Score=129.07 Aligned_cols=98 Identities=23% Similarity=0.394 Sum_probs=57.7
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCcc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 79 (911)
.++.+++.++ .+|..+. +.++.|++++|.|+.++ ..|..+++|++|+|++|.|+.+ |..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 4556666665 3454443 45666666666666553 3566666666666666666655 445666666666666663
Q ss_pred ccccchhh-hhccCcccEEEcCCCc
Q 048779 80 RLKKLCAD-MGNLIKLHHLNNSNTD 103 (911)
Q Consensus 80 ~~~~lp~~-i~~L~~L~~L~L~~~~ 103 (911)
.++.+|.. +.++++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCC
Confidence 34455433 4566666666666666
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=8.5e-13 Score=129.15 Aligned_cols=119 Identities=11% Similarity=0.187 Sum_probs=104.2
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCc-CChhhhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRT-LPESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~~L~~L~~L~l~~~~ 79 (911)
+.|++++|+++ .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus 47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 47999999998 556 6899999999999999888776 58999999999999999995 57889999999999999976
Q ss_pred ccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccc
Q 048779 80 RLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCN 123 (911)
Q Consensus 80 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~ 123 (911)
.....|..++++++|++|++++|..++.+| .+..+++|+.|+.
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 666678889999999999999997677777 5888888888854
No 113
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=126.46 Aligned_cols=124 Identities=21% Similarity=0.281 Sum_probs=106.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCCcc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVGCR 79 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~~~ 79 (911)
+++++++|+++ .+|..+. ++|++|++++|.++.+|..|.++++|++|+|++|.|+.++ ..|.++++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46899999998 6777665 6899999999999999999999999999999999999987 459999999999999965
Q ss_pred ccccc-hhhhhccCcccEEEcCCCcccccCcCC-CCCccccccccceeccCC
Q 048779 80 RLKKL-CADMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFVVGKD 129 (911)
Q Consensus 80 ~~~~l-p~~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~ 129 (911)
+..+ |..|.++++|++|++++|. +..+|.. +..+++|+.|+.......
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 5555 4579999999999999999 7788874 888999999866554433
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=4.8e-14 Score=152.80 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=83.6
Q ss_pred CeeeccCCccccccc----ccccCCC-CCCEEEccCCCCccc-cccccCC-----CCCCeEEccCCCCCcCC-hh----h
Q 048779 1 MLLNSRHGYLAHSIL----PKLFKLQ-SLRVFSLRGYRISEL-PDSVGDL-----RYLRHLNLSGTEIRTLP-ES----V 64 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~l-p~~~~~l-----~~L~~L~L~~~~l~~lp-~~----~ 64 (911)
+.|||++|++++..+ ..|..++ +|++|+|++|.++.. +..+..+ ++|++|++++|.++..+ .. +
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999998877 7788888 999999999999865 5566654 99999999999999664 33 4
Q ss_pred hcC-CCccEEecCCccccccchhhhh----c-cCcccEEEcCCCcccc
Q 048779 65 NKL-YNLHTLLLVGCRRLKKLCADMG----N-LIKLHHLNNSNTDLLK 106 (911)
Q Consensus 65 ~~L-~~L~~L~l~~~~~~~~lp~~i~----~-L~~L~~L~L~~~~~~~ 106 (911)
..+ ++|+.|++++|......+..++ . .++|++|++++|. ++
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~ 151 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LG 151 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GG
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CC
Confidence 455 8999999999764444444443 3 3699999999999 44
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.6e-12 Score=126.45 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=105.1
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccc--cccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPD--SVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~ 77 (911)
+.+|+++|+++ .+|..+.. ++++|++++|.++.++. .|+.+++|++|+|++|.|+.+ |..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 47899999996 67877753 99999999999998865 389999999999999999988 67799999999999999
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCC
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKD 129 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~ 129 (911)
|......|..++++++|++|++++|.+.+..|..+..+++|+.|+.......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6544444456899999999999999955555778999999999966554433
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.4e-12 Score=127.35 Aligned_cols=123 Identities=28% Similarity=0.352 Sum_probs=105.7
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.|++++|++++..+..|..+++|++|++++|.++.+| ..|..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 47999999999766667899999999999999999885 4578999999999999999999755 799999999999996
Q ss_pred cccccchh-hhhccCcccEEEcCCCcccccCcCC-CCCcccccccccee
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFV 125 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~ 125 (911)
.+..+|. .++++++|++|++++|. +..+|.. +..+++|+.|+...
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 111 -QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred -cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence 4566654 47999999999999999 6677765 78899999886443
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=4e-12 Score=145.80 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=96.2
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
+.|++++|.+.. + +.+..+++|+.|+|++|.++.++. +..+++|++|+|++|.++.+| .+..+++|+.|+|++|.
T Consensus 46 ~~L~l~~n~i~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~- 120 (605)
T 1m9s_A 46 DQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG- 120 (605)
T ss_dssp CCCBCTTCCCCC-C-TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-
T ss_pred CEEECcCCCCCC-C-hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-
Confidence 468999999975 3 368999999999999999999876 999999999999999999986 79999999999999964
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCCCcccccccc
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLC 122 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~ 122 (911)
+..+ ..+..+++|+.|+|++|. +..+ ..+..+++|+.|+
T Consensus 121 l~~l-~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 121 ISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEE
T ss_pred CCCC-ccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEE
Confidence 5556 469999999999999998 5555 3466666666663
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=9.5e-12 Score=140.85 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=41.4
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.|++++|++++ +|..+. ++|++|+|++|.|+.+| ..+++|++|++++|.|+.+|. +.+ +|++|++++| .+
T Consensus 63 ~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l 132 (571)
T 3cvr_A 63 ELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QL 132 (571)
T ss_dssp EEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CC
T ss_pred EEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cC
Confidence 34555555543 343332 44555555555555444 234455555555555554444 333 4555555553 23
Q ss_pred ccchhhhhccCcccEEEcCCCc
Q 048779 82 KKLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~ 103 (911)
+.+|. .+++|++|++++|.
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSC
T ss_pred CCCCC---cCccccEEeCCCCc
Confidence 33443 34455555555554
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=9.2e-12 Score=127.71 Aligned_cols=168 Identities=20% Similarity=0.146 Sum_probs=126.0
Q ss_pred eeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCcccc
Q 048779 2 LLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRL 81 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~ 81 (911)
.+++++|.+++. + .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+
T Consensus 23 ~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l 97 (263)
T 1xeu_A 23 KQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RL 97 (263)
T ss_dssp HHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CC
T ss_pred HHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-cc
Confidence 357788888753 3 6788899999999999999988 58899999999999999999876 999999999999995 56
Q ss_pred ccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceeccCCCCCChhhhhhhhccccceeecccCCCCChhhh
Q 048779 82 KKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVVGKDSGSGLPELKLLMHLRGTLKISKLENVKDVGNA 161 (911)
Q Consensus 82 ~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~ 161 (911)
+.+|.... ++|++|++++|. +..++ .+..+++|+.|+....... ..
T Consensus 98 ~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~------------------------~~------ 143 (263)
T 1xeu_A 98 KNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK------------------------SI------ 143 (263)
T ss_dssp SCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC------------------------BC------
T ss_pred CCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCC------------------------CC------
Confidence 66764333 899999999998 66665 4888888888853322111 10
Q ss_pred hhhccCCCCCccEEEEEEeecCCCCCCccchhhcccCCCCCCCCCccEEEEeeeCCCCCCCC
Q 048779 162 KEAQMDGKKNLRELLLRWTCCTDGSSSREAETEMGVLDMLKPHKNLEQFYICGYGGTKFPTW 223 (911)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 223 (911)
..+..+++|+.|++++|...+. ..+..+++|+.|++++|.....|..
T Consensus 144 --~~l~~l~~L~~L~L~~N~i~~~-------------~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 144 --VMLGFLSKLEVLDLHGNEITNT-------------GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp --GGGGGCTTCCEEECTTSCCCBC-------------TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred --hHHccCCCCCEEECCCCcCcch-------------HHhccCCCCCEEeCCCCcccCCccc
Confidence 1255667788888876665322 3456678888999988887766544
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3.2e-12 Score=122.50 Aligned_cols=120 Identities=21% Similarity=0.143 Sum_probs=96.3
Q ss_pred CeeeccCCcccccccccccCCC-CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQ-SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.|++++|+++. +| .+..+. +|++|++++|.++.+ ..+..+++|++|++++|.|+.+|.. +..+++|++|++++|
T Consensus 22 ~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 22 RELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred eEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence 368899999884 44 454444 899999999999887 5688999999999999999988755 588999999999995
Q ss_pred cccccchh--hhhccCcccEEEcCCCcccccCcCC----CCCcccccccccee
Q 048779 79 RRLKKLCA--DMGNLIKLHHLNNSNTDLLKEMPVG----IGKLTCLQTLCNFV 125 (911)
Q Consensus 79 ~~~~~lp~--~i~~L~~L~~L~L~~~~~~~~~p~~----~~~L~~L~~L~~~~ 125 (911)
.++.+|. .++.+++|++|++++|. +..+|.. +..+++|+.|+...
T Consensus 99 -~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 99 -SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 5677776 68889999999999998 6677774 77888888886543
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=5.1e-12 Score=136.60 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=105.9
Q ss_pred CeeeccCCccccccccccc-CCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKLF-KLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~ 77 (911)
++|||++|++++..+..|. .+++|++|+|++|.|+.++ .+|.++++|++|+|++|+|+.+|. .|..+++|++|++++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 4799999999987777776 9999999999999999884 679999999999999999998875 599999999999999
Q ss_pred ccccccchhhhhccCcccEEEcCCCcccccCcCCC----CCcccccccccee
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGI----GKLTCLQTLCNFV 125 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~----~~L~~L~~L~~~~ 125 (911)
|......|..|.++++|++|+|++|. +..+|..+ ..+++|+.|+...
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred CcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence 65444446789999999999999999 88888764 5688888886543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=7.1e-12 Score=142.88 Aligned_cols=116 Identities=23% Similarity=0.257 Sum_probs=92.6
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
++|+|++|.+++ +|. |..+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+.+| .++.+++|++|++++|.
T Consensus 444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~- 519 (567)
T 1dce_A 444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR- 519 (567)
T ss_dssp SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-
T ss_pred eEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-
Confidence 468889998885 565 88888999999999998888888888999999999999888887 78888999999998854
Q ss_pred cccc--hhhhhccCcccEEEcCCCcccccCcCCCC----Cccccccc
Q 048779 81 LKKL--CADMGNLIKLHHLNNSNTDLLKEMPVGIG----KLTCLQTL 121 (911)
Q Consensus 81 ~~~l--p~~i~~L~~L~~L~L~~~~~~~~~p~~~~----~L~~L~~L 121 (911)
+..+ |..++++++|++|++++|. +..+|..+. .+++|+.|
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 4444 7888889999999999888 666665433 24555554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=1.1e-11 Score=117.84 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=89.4
Q ss_pred cCCCCCCEEEccCCCCc--cccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccE
Q 048779 19 FKLQSLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHH 96 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~ 96 (911)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34478999999999998 8898889999999999999999988 77999999999999997655558888888999999
Q ss_pred EEcCCCcccccCc--CCCCCccccccccc
Q 048779 97 LNNSNTDLLKEMP--VGIGKLTCLQTLCN 123 (911)
Q Consensus 97 L~L~~~~~~~~~p--~~~~~L~~L~~L~~ 123 (911)
|++++|. +..+| ..+..+++|+.|+.
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEEC
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEe
Confidence 9999999 77776 56778888887743
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.2e-11 Score=117.86 Aligned_cols=108 Identities=24% Similarity=0.273 Sum_probs=89.7
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.+|+++|+++ .+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36899999986 6777775 7899999999999988 67889999999999999999999865 689999999999995
Q ss_pred cccccchhh-hhccCcccEEEcCCCcccccCcCCCC
Q 048779 79 RRLKKLCAD-MGNLIKLHHLNNSNTDLLKEMPVGIG 113 (911)
Q Consensus 79 ~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~~p~~~~ 113 (911)
.+..+|.. +.++++|++|++++|. +...+.++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIM 125 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGH
T ss_pred -ccceeCHHHhccccCCCEEEeCCCC-cccccccHH
Confidence 56677654 8899999999999998 555554443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.6e-11 Score=119.30 Aligned_cols=104 Identities=17% Similarity=0.179 Sum_probs=92.8
Q ss_pred CeeeccCCcccccccc-cccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILP-KLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~ 77 (911)
+.|++++|++++..+. .|..+++|++|+|++|.|+.+ |.+|.++++|++|+|++|+|+.++. .|.++++|++|++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 4799999999876664 379999999999999999988 7889999999999999999998864 499999999999999
Q ss_pred ccccccchhhhhccCcccEEEcCCCcc
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTDL 104 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~~ 104 (911)
|......|..++.+++|++|++++|.+
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 112 NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 765556688899999999999999983
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=9.5e-12 Score=146.62 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=97.2
Q ss_pred eeccCCcccc---------cccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEE
Q 048779 3 LNSRHGYLAH---------SILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTL 73 (911)
Q Consensus 3 L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L 73 (911)
++|+.|.|.+ ..+..|..++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|..|++|++|++|
T Consensus 196 l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 275 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVL 275 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEE
T ss_pred CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEE
Confidence 4555555544 3466779999999999999999999988889999999999999999999999999999999
Q ss_pred ecCCccccccchhhhhccCcccEEEcCCCcccccCcCCCCCccccccccceec
Q 048779 74 LLVGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIGKLTCLQTLCNFVV 126 (911)
Q Consensus 74 ~l~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~~L~~L~~L~~~~~ 126 (911)
+|++|. +..+|..|++|++|++|+|++|. ++.+|..|+.+++|+.|+....
T Consensus 276 ~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 276 DLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred eCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 999964 66899999999999999999999 7899999999999999965433
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=2.6e-11 Score=114.99 Aligned_cols=99 Identities=26% Similarity=0.341 Sum_probs=85.4
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.+|+++|.++ .+|..+. +.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46899999998 5777664 7899999999999988 77789999999999999999999765 789999999999995
Q ss_pred cccccchh-hhhccCcccEEEcCCCc
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~ 103 (911)
.+..+|. .+.++++|++|++++|.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 5666665 58999999999999998
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.21 E-value=4.3e-11 Score=116.17 Aligned_cols=101 Identities=24% Similarity=0.285 Sum_probs=91.5
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccc-cccccCCCCCCeEEccCCCCCcCCh-hhhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISEL-PDSVGDLRYLRHLNLSGTEIRTLPE-SVNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp~-~~~~L~~L~~L~l~~~ 78 (911)
+.|++++|+++ .+|..|..+++|++|+|++|.|+.+ +.+|.++++|++|+|++|.|+.+|. .|..+++|++|++++|
T Consensus 34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 47999999998 6788999999999999999999988 5679999999999999999999874 6999999999999995
Q ss_pred cccccchh-hhhccCcccEEEcCCCc
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~ 103 (911)
.+..+|. .+..+++|++|++++|.
T Consensus 113 -~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 113 -DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCCeeChhhhhcCccccEEEeCCCC
Confidence 5667765 58999999999999998
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=8.3e-11 Score=112.74 Aligned_cols=122 Identities=26% Similarity=0.361 Sum_probs=101.2
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.+++++|+++ .+|..+. ++|++|++++|.++.+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 36889999987 5665554 69999999999999885 4578999999999999999999755 799999999999995
Q ss_pred cccccchh-hhhccCcccEEEcCCCcccccCcCC-CCCccccccccceecc
Q 048779 79 RRLKKLCA-DMGNLIKLHHLNNSNTDLLKEMPVG-IGKLTCLQTLCNFVVG 127 (911)
Q Consensus 79 ~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~~p~~-~~~L~~L~~L~~~~~~ 127 (911)
.++.+|. .++++++|++|++++|. +..+|.. +..+++|++|+.....
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 -KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 4556654 47899999999999999 7788876 5789999988655443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=2.8e-11 Score=112.35 Aligned_cols=104 Identities=22% Similarity=0.246 Sum_probs=91.0
Q ss_pred CCCCCCEEEccCCCCc--cccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEE
Q 048779 20 KLQSLRVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHL 97 (911)
Q Consensus 20 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 97 (911)
..++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..++++++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3478999999999998 8898889999999999999999988 779999999999999976545588888999999999
Q ss_pred EcCCCcccccCc--CCCCCcccccccccee
Q 048779 98 NNSNTDLLKEMP--VGIGKLTCLQTLCNFV 125 (911)
Q Consensus 98 ~L~~~~~~~~~p--~~~~~L~~L~~L~~~~ 125 (911)
++++|. +..+| ..++.+++|++|+...
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTT
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcC
Confidence 999999 66665 6788999999886443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=7.4e-11 Score=113.10 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=90.7
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccc-ccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELP-DSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
+.|++++|++++..+..|..+++|++|++++|.++.+| ..|..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 47999999999766667799999999999999999885 4579999999999999999998765 799999999999996
Q ss_pred cccccchhh-hhccCcccEEEcCCCcc
Q 048779 79 RRLKKLCAD-MGNLIKLHHLNNSNTDL 104 (911)
Q Consensus 79 ~~~~~lp~~-i~~L~~L~~L~L~~~~~ 104 (911)
.++.+|.. +.++++|++|++++|.+
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 111 -QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -cceEeCHHHhcCCcccCEEEecCCCe
Confidence 56677655 68899999999999983
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=2.3e-10 Score=121.96 Aligned_cols=288 Identities=17% Similarity=0.117 Sum_probs=157.5
Q ss_pred ccCCCCeEeEccCCCcccchhhhhHHHHhhhcccccCcceEEEEeccccccccccccCCCCccEEEecCCCCccccCCCC
Q 048779 438 DICSLKRLTITSCSKLQSLVAEEEEDQRQKLCEFSCRLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPEVA 517 (911)
Q Consensus 438 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 517 (911)
.+.++++|.+++.-. ...+ ..+.. ..++|+.|+++++... .+...-..++.+..+.+... .++...
T Consensus 23 ~~~~l~~L~l~g~i~-----~~~~-~~l~~---~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGKLN-----AEDF-RHLRD---EFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEEEC-----HHHH-HHHHH---SCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecccc-----HHHH-HHHHH---hhccCeEEecCcceeE-EecCcccccccccccccccc----ccCHHH
Confidence 467889999987421 1111 12222 1388999999998764 11111112233333444332 344433
Q ss_pred --C--------CCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccCCCCCCCCceeecccCCCcccccc
Q 048779 518 --L--------PSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAGVQLPPSLKTLFIDECGNIRTLTV 587 (911)
Q Consensus 518 --~--------~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 587 (911)
. +++|+++++.+ .++.++...| .+|++|+.+++.+ +.+..++...+.. |.++..+..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~---------~~~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALAD---------SVTAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCT---------TTCEEEECT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcC---------CCceEEecC
Confidence 2 67888888887 4777877766 7888888888887 4555666544432 333332211
Q ss_pred cccccccCCccccccccccceEeeecCCCccccccC---CCCchhhhhhhccCCCCCCcEEEEcCCCCccchhhhhccCC
Q 048779 588 EEGIHSSSSSSRRYNSSLLEHLGIRYCPSLTCIFSK---NELPATLESLEVGNLPPSLKSLCVYGCSKLESIAERLDDNT 664 (911)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~---~~~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~ 664 (911)
...... .....++...+.+|..++..+.. +.++..+.. ....+.+++.+.+.+.-...........++
T Consensus 156 ~~~~~~-------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~ 226 (329)
T 3sb4_A 156 GSSDAY-------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK--AGLQPRDINFLTIEGKLDNADFKLIRDYMP 226 (329)
T ss_dssp TCTHHH-------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH--TTCCGGGCSEEEEEECCCHHHHHHHHHHCT
T ss_pred cchhhh-------hccccccccccccccccceeEEecCCCcHHHHHhh--cccCccccceEEEeeeecHHHHHHHHHhcC
Confidence 110000 00012333334444444421110 001111110 011235566666665433222332223477
Q ss_pred cccEEEecccccccccccccccCCCcceEEeccCccccccCCC-CCCCCCcc-EEeeccccCcccccc-cccCCCccCcE
Q 048779 665 SLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPEG-GLPCAKLT-RLEIYDCKRLEALPK-GLHNLKSLQEL 741 (911)
Q Consensus 665 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~~-~l~~l~~L~~L 741 (911)
+|+.+++++|.........|.++++|+++++.++ ++.++.. |..+++|+ .+.+.+ .++.++. .+.++++|+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence 8888888876644444456777888888888765 6667664 55777787 888876 5555543 57777788888
Q ss_pred EeCC-ccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEE
Q 048779 742 RIGG-ELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLS 792 (911)
Q Consensus 742 ~l~~-~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~ 792 (911)
+++. .+..++. .+|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~---------------------------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGD---------------------------ELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECT---------------------------TTTCTTCCCCEEE
T ss_pred EeCCCccCccch---------------------------hhhcCCcchhhhc
Confidence 7755 6666654 6778888888775
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=3e-11 Score=142.33 Aligned_cols=111 Identities=24% Similarity=0.362 Sum_probs=101.0
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
++|||++|.+. .+|..+..+++|++|+|++|.|+.+|..|+++++|++|+|++|.|+.+|..|.+|++|++|+|++| .
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~ 304 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-M 304 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-C
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-C
Confidence 47999999998 788888899999999999999999999999999999999999999999999999999999999995 5
Q ss_pred cccchhhhhccCcccEEEcCCCcccccCcCCCC
Q 048779 81 LKKLCADMGNLIKLHHLNNSNTDLLKEMPVGIG 113 (911)
Q Consensus 81 ~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~~~~ 113 (911)
++.+|..|+++++|++|+|++|.+.+.+|..+.
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 789999999999999999999995555555443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=7.5e-11 Score=112.85 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=89.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCcccccc-ccCCCCCCeEEccCCCCCcCCh--hhhcCCCccEEecCC
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDS-VGDLRYLRHLNLSGTEIRTLPE--SVNKLYNLHTLLLVG 77 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~l~~lp~--~~~~L~~L~~L~l~~ 77 (911)
++||+++|++++. +.|..+++|++|++++|.++.+|.. +..+++|++|++++|.|+.+|. .+..+++|++|++++
T Consensus 45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence 5799999999974 7889999999999999999999754 4899999999999999999987 799999999999999
Q ss_pred ccccccchhh----hhccCcccEEEcCCCc
Q 048779 78 CRRLKKLCAD----MGNLIKLHHLNNSNTD 103 (911)
Q Consensus 78 ~~~~~~lp~~----i~~L~~L~~L~L~~~~ 103 (911)
| .+..+|.. ++.+++|++||+++|.
T Consensus 123 N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 123 N-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp S-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred C-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5 46677764 8999999999999988
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=2.1e-12 Score=126.49 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred eeeccCCcccccccc------cccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEec
Q 048779 2 LLNSRHGYLAHSILP------KLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLL 75 (911)
Q Consensus 2 ~L~Ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l 75 (911)
.++++.+.+.+..|. .|..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|+.|++
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 467788888887776 8899999999999999999998 799999999999999999999988888999999999
Q ss_pred CCccccccchhhhhccCcccEEEcCCCcccccCcC--CCCCccccccccc
Q 048779 76 VGCRRLKKLCADMGNLIKLHHLNNSNTDLLKEMPV--GIGKLTCLQTLCN 123 (911)
Q Consensus 76 ~~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~~p~--~~~~L~~L~~L~~ 123 (911)
++| .+..+| .++++++|++|++++|. +..+|. .+..+++|+.|+.
T Consensus 101 ~~N-~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 101 SYN-QIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEE-ECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred cCC-cCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 995 566676 68999999999999999 666654 5788888888854
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=2.8e-12 Score=125.58 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=101.9
Q ss_pred CeeeccCCcccccccccccCCCCCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccc
Q 048779 1 MLLNSRHGYLAHSILPKLFKLQSLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRR 80 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 80 (911)
+.|++++|++++ +| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+..+++|++|++++| .
T Consensus 51 ~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~ 126 (198)
T 1ds9_A 51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-K 126 (198)
T ss_dssp SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-E
T ss_pred CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-c
Confidence 579999999986 66 889999999999999999999988888999999999999999986 7999999999999995 5
Q ss_pred cccchh--hhhccCcccEEEcCCCcccccCcCC----------CCCccccccccc
Q 048779 81 LKKLCA--DMGNLIKLHHLNNSNTDLLKEMPVG----------IGKLTCLQTLCN 123 (911)
Q Consensus 81 ~~~lp~--~i~~L~~L~~L~L~~~~~~~~~p~~----------~~~L~~L~~L~~ 123 (911)
+..+|. .+.++++|++|++++|.+....|.. +..+++|+.|+.
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 666654 6899999999999999954444432 677788887753
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.08 E-value=6e-11 Score=135.23 Aligned_cols=98 Identities=24% Similarity=0.271 Sum_probs=88.3
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcCChhhhcCCCccEEecCCccccccchhhhhccCcccEEEcCCC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTLPESVNKLYNLHTLLLVGCRRLKKLCADMGNLIKLHHLNNSNT 102 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~L~~~ 102 (911)
.|++|+|++|.++.+|. ++.+++|++|+|++|.|+.+|..|+.+++|+.|++++| .++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 58999999999999987 99999999999999999999999999999999999995 566788 8999999999999999
Q ss_pred cccccC--cCCCCCccccccccce
Q 048779 103 DLLKEM--PVGIGKLTCLQTLCNF 124 (911)
Q Consensus 103 ~~~~~~--p~~~~~L~~L~~L~~~ 124 (911)
. +..+ |..++.+++|+.|+..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEec
Confidence 9 6666 7889999999988543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=8.3e-10 Score=117.59 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=44.8
Q ss_pred CCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCCCCCCCCCchhhhccccCcCCCCCCcc-eeeecCCCCccc
Q 048779 757 PTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLT-SMWIGDFPNLER 835 (911)
Q Consensus 757 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~ 835 (911)
+++|+++++.+|....... .+|.++++|+.|++.++ +..+++..+ ..+.+|+ .+.+.+ +++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~~aF--------~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQRVF--------SNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECTTTT--------TTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehHHHh--------hCChhccEEEEEcc--cceE
Confidence 4555555555544222111 45556666666665552 344443332 3455555 555554 4555
Q ss_pred ccc-ccCCCCCcceEecccCCCccccCCC
Q 048779 836 LSS-SIVDLQNLTELRLHDCPKLKYFPEK 863 (911)
Q Consensus 836 l~~-~l~~l~~L~~L~l~~c~~l~~l~~~ 863 (911)
++. .+..+++|+.+++.+ ++++.|+..
T Consensus 288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~ 315 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATG-DKITTLGDE 315 (329)
T ss_dssp ECTTTTTTCTTEEEEEECS-SCCCEECTT
T ss_pred EchhhhhCCccCCEEEeCC-CccCccchh
Confidence 544 455555666665554 455555543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.5e-09 Score=103.11 Aligned_cols=102 Identities=22% Similarity=0.374 Sum_probs=88.2
Q ss_pred CCEEEccCCCCccccccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccchhh-hhccCcccEEEcCC
Q 048779 24 LRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKLCAD-MGNLIKLHHLNNSN 101 (911)
Q Consensus 24 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~L~~ 101 (911)
-+.+++++|.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. ++++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4789999999999998775 8999999999999988 466999999999999995 67777765 68999999999999
Q ss_pred CcccccCcCC-CCCccccccccceeccCC
Q 048779 102 TDLLKEMPVG-IGKLTCLQTLCNFVVGKD 129 (911)
Q Consensus 102 ~~~~~~~p~~-~~~L~~L~~L~~~~~~~~ 129 (911)
|. +..+|.. +..+++|+.|+.......
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 99 7788876 899999999976555443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.9e-09 Score=102.12 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=87.8
Q ss_pred CCCEEEccCCCCccccccccCCCCCCeEEccCCCCCcC-ChhhhcCCCccEEecCCccccccchhh-hhccCcccEEEcC
Q 048779 23 SLRVFSLRGYRISELPDSVGDLRYLRHLNLSGTEIRTL-PESVNKLYNLHTLLLVGCRRLKKLCAD-MGNLIKLHHLNNS 100 (911)
Q Consensus 23 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~L~ 100 (911)
..+++++++|.++.+|..+. ++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. +.++++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 35799999999999997664 8999999999999988 466999999999999995 56677654 7999999999999
Q ss_pred CCcccccCcCC-CCCccccccccceeccCC
Q 048779 101 NTDLLKEMPVG-IGKLTCLQTLCNFVVGKD 129 (911)
Q Consensus 101 ~~~~~~~~p~~-~~~L~~L~~L~~~~~~~~ 129 (911)
+|. +..+|.. +..+++|+.|+.......
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999 7788775 899999999976555443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=2.1e-07 Score=101.10 Aligned_cols=184 Identities=14% Similarity=0.155 Sum_probs=106.9
Q ss_pred CCcccEEEeccccccccc-ccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccc-cccCCCccCc
Q 048779 663 NTSLKIIRIDFCEKLKIL-PSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPK-GLHNLKSLQE 740 (911)
Q Consensus 663 l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~ 740 (911)
+.+|+.+.+..+ ++.+ ...|.++++|+.+++.. .++.++...+.-.+|+.+.+.+ .++.++. .+.++++|+.
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCE
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCE
Confidence 455666666532 2222 23455666666666654 3555555433335666666632 3444433 4556666666
Q ss_pred EEeCCccCccccCCCCCCCCCceEEecccch----hhhhhhcCcccCCCCCccEEEeccCCCCCCCCCchhhhccccCcC
Q 048779 741 LRIGGELPSLEEDDGLPTDLRSLEIIFNTKI----WKSMIERGQGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTAL 816 (911)
Q Consensus 741 L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l----~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~ 816 (911)
+++.+ +... ..+. ..+|.++++|+.+.+.+ .+..++...+
T Consensus 276 l~l~~----------------------~~~~~~~~~~I~---~~aF~~c~~L~~l~l~~---~i~~I~~~aF-------- 319 (401)
T 4fdw_A 276 VTTYG----------------------STFNDDPEAMIH---PYCLEGCPKLARFEIPE---SIRILGQGLL-------- 319 (401)
T ss_dssp EEEES----------------------SCCCCCTTCEEC---TTTTTTCTTCCEECCCT---TCCEECTTTT--------
T ss_pred EEeCC----------------------ccccCCcccEEC---HHHhhCCccCCeEEeCC---ceEEEhhhhh--------
Confidence 66544 2111 0011 15678888888888875 3555555443
Q ss_pred CCCCCcceeeecCCCCcccccc-ccCCCCCcceEecccCCCccccCCC---CCcccccceeecCCchhHHHhhccCCccc
Q 048779 817 PLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHDCPKLKYFPEK---GLPSSLLQLQIWGCPLMKEKCRKDGGQYW 892 (911)
Q Consensus 817 ~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~sL~~L~i~~c~~l~~~~~~~~~~~~ 892 (911)
..+++|+.+.+.. +++.++. .+..+ +|+.+++.+ +.+..++.. +++.+++.|++-... .+.++.. ..|
T Consensus 320 ~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W 391 (401)
T 4fdw_A 320 GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGW 391 (401)
T ss_dssp TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTG
T ss_pred cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cch
Confidence 4567888888854 5788876 67777 999999988 566677664 335678888887532 2334433 347
Q ss_pred cccc
Q 048779 893 DLLI 896 (911)
Q Consensus 893 ~~i~ 896 (911)
....
T Consensus 392 ~~f~ 395 (401)
T 4fdw_A 392 RDFT 395 (401)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 6544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=2.3e-07 Score=100.68 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=29.9
Q ss_pred CccEEEecCCCCccccCCCCC-CCCCcEEEeccCCCCCccchhhhcCCCCCccEEEEecCCCCccccC
Q 048779 498 SLREIFIGGCNSLVSFPEVAL-PSKLKKIEISECDALKSLPEAWMCDTNSSLEILYIESCHSLRYIAG 564 (911)
Q Consensus 498 ~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 564 (911)
+|+.+.+.+ .++.++..++ -.+|+.+.+.+ .++.+....| .+|++|+.+++.+ +.++.++.
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF-~~c~~L~~l~l~~-n~l~~I~~ 197 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIF-YYCYNLKKADLSK-TKITKLPA 197 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSSTT-TTCTTCCEEECTT-SCCSEECT
T ss_pred CccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHHHh-hCcccCCeeecCC-CcceEech
Confidence 455555543 2444444333 23455555553 3455554444 5556666666654 34444443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.2e-08 Score=109.55 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=68.5
Q ss_pred eeeccCC-cccccccccccCCCCCCEEEccC-CCCcccc-ccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCC
Q 048779 2 LLNSRHG-YLAHSILPKLFKLQSLRVFSLRG-YRISELP-DSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVG 77 (911)
Q Consensus 2 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~ 77 (911)
.++.+++ +++ .+|. |..+++|++|+|++ |.|+.+| ..|.++++|++|+|++|+|+.+| ..|.+|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 676 4666 77777788888875 7777774 56777788888888888777665 3577777888888877
Q ss_pred ccccccchhhhhccCcccEEEcCCCc
Q 048779 78 CRRLKKLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 78 ~~~~~~lp~~i~~L~~L~~L~L~~~~ 103 (911)
| .+..+|..+....+|++|++.+|.
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred C-ccceeCHHHcccCCceEEEeeCCC
Confidence 4 455666543333337777777776
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.1e-08 Score=106.38 Aligned_cols=103 Identities=17% Similarity=0.096 Sum_probs=84.2
Q ss_pred CEEEccCC-CCccccccccCCCCCCeEEccC-CCCCcCC-hhhhcCCCccEEecCCccccccc-hhhhhccCcccEEEcC
Q 048779 25 RVFSLRGY-RISELPDSVGDLRYLRHLNLSG-TEIRTLP-ESVNKLYNLHTLLLVGCRRLKKL-CADMGNLIKLHHLNNS 100 (911)
Q Consensus 25 ~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~-~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~L~ 100 (911)
..++++++ .++.+|. +..+++|++|+|++ |.|+.+| ..|.+|++|+.|+|++|. +..+ |..|++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8999999 99999999999996 9999998 569999999999999965 5555 5678999999999999
Q ss_pred CCcccccCcCCCCCccccccccceeccCCC
Q 048779 101 NTDLLKEMPVGIGKLTCLQTLCNFVVGKDS 130 (911)
Q Consensus 101 ~~~~~~~~p~~~~~L~~L~~L~~~~~~~~~ 130 (911)
+|. +..+|..+.....|+.|+........
T Consensus 89 ~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 999 78888764433338888665544433
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=6.7e-07 Score=97.61 Aligned_cols=189 Identities=16% Similarity=0.083 Sum_probs=109.4
Q ss_pred hhccCCcccEEEeccccccccc-ccccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccc-cccCCC
Q 048779 659 RLDDNTSLKIIRIDFCEKLKIL-PSGLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPK-GLHNLK 736 (911)
Q Consensus 659 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~ 736 (911)
.+.++.+|+.+++..+ ++.+ ...+.++..|+.+.+... ...+........+|+.+.+.. .+..+.. .+.++.
T Consensus 180 ~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCT 253 (394)
T ss_dssp TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCS
T ss_pred cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECC--Cceecccccccccc
Confidence 4556666666666543 2222 234556666666665442 333444445556777776654 2333322 456677
Q ss_pred ccCcEEeCCccCcccc-CCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEeccCCCCCCCCCchhhhccccCc
Q 048779 737 SLQELRIGGELPSLEE-DDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTA 815 (911)
Q Consensus 737 ~L~~L~l~~~~~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~ 815 (911)
.|+.+.+......+.. ....+..++.+...... .+. ..+..+.+|+.+.+.+ .+..+++..+
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-----i~~--~~F~~~~~L~~i~l~~---~i~~I~~~aF------- 316 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-----VPE--KTFYGCSSLTEVKLLD---SVKFIGEEAF------- 316 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-----ECT--TTTTTCTTCCEEEECT---TCCEECTTTT-------
T ss_pred cceeEEcCCCcceeeccccccccccceeccCcee-----ecc--cccccccccccccccc---ccceechhhh-------
Confidence 7777777663333322 23344555555544322 111 4677788888888865 2444444332
Q ss_pred CCCCCCcceeeecCCCCcccccc-ccCCCCCcceEecccCCCccccCCCCC--cccccceeec
Q 048779 816 LPLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHDCPKLKYFPEKGL--PSSLLQLQIW 875 (911)
Q Consensus 816 ~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L~i~ 875 (911)
..+.+|+.+++.. +++.++. .+..+++|+.+.+.. .++.|+...+ +.+|+.+++.
T Consensus 317 -~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 317 -ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp -TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred -cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 4567888888763 5777766 677788888888864 3777776554 6778888775
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=4.1e-07 Score=99.33 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=48.2
Q ss_pred hccCCcccEEEecccccccccccccccCCCcceEEeccCccccccCC-CCCCCCCccEEeeccccCcccccccccCCCcc
Q 048779 660 LDDNTSLKIIRIDFCEKLKILPSGLHNLRQLLEIKIWWCGNLVTFPE-GGLPCAKLTRLEIYDCKRLEALPKGLHNLKSL 738 (911)
Q Consensus 660 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L 738 (911)
.....+|+.+.+.... ...-...+..+..|+.+.+..+ ...+.. .+..++.++.+..... .+. ...+.++.+|
T Consensus 226 ~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~-~i~--~~~F~~~~~L 299 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV-IVP--EKTFYGCSSL 299 (394)
T ss_dssp TTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS-EEC--TTTTTTCTTC
T ss_pred hcccCCCceEEECCCc-eecccccccccccceeEEcCCC--cceeeccccccccccceeccCce-eec--cccccccccc
Confidence 3445667777665321 1112235566778888877653 333433 3556677777766542 111 1246677788
Q ss_pred CcEEeCCccCcccc
Q 048779 739 QELRIGGELPSLEE 752 (911)
Q Consensus 739 ~~L~l~~~~~~l~~ 752 (911)
+.+.+...+..+++
T Consensus 300 ~~i~l~~~i~~I~~ 313 (394)
T 4fs7_A 300 TEVKLLDSVKFIGE 313 (394)
T ss_dssp CEEEECTTCCEECT
T ss_pred cccccccccceech
Confidence 88877665555543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=1.2e-05 Score=87.51 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=30.2
Q ss_pred ccCCC-CccEEEecCCCCccccCCCCC--CCCCcEEEeccC--CCCCccchhhhcCCCCCccEEE
Q 048779 493 LLSLS-SLREIFIGGCNSLVSFPEVAL--PSKLKKIEISEC--DALKSLPEAWMCDTNSSLEILY 552 (911)
Q Consensus 493 l~~l~-~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~ 552 (911)
+.++. .|+++.+.+ .++.+...+| +.+|+.+.+..+ ..++.+....| ..+.+|+.+.
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~ 120 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIP 120 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCG
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeec
Confidence 44443 467777654 3555555444 566776666554 23555554444 4445554443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=9.4e-06 Score=88.46 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred CcceEEEEecccccccc-ccccCCCCccEEEecCC--CCccccCCCCC--CCCCcEEEeccCCCCCccchhhhcCCCCCc
Q 048779 474 RLEYLRLYICEGLVKLP-QSLLSLSSLREIFIGGC--NSLVSFPEVAL--PSKLKKIEISECDALKSLPEAWMCDTNSSL 548 (911)
Q Consensus 474 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~c--~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 548 (911)
.|+.+.+-.. ++.+. ..+.++.+|+++.+.+. ..++.+...++ +.+|+.+.+.. .++.+....+ ..+.+|
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF-~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAF-HHCEEL 139 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTT-TTCTTC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhh-hhhccc
Confidence 4788877542 34443 46788999999999763 34677766555 56777766543 3566666555 678888
Q ss_pred cEEEEecCCCCccccCC--CCCCCCceeecc
Q 048779 549 EILYIESCHSLRYIAGV--QLPPSLKTLFID 577 (911)
Q Consensus 549 ~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~ 577 (911)
+.+.+.. .+..++.. ....+|+.+.+.
T Consensus 140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc--eeeeecccceeccccccccccc
Confidence 8888854 34444433 223445555543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=8.8e-08 Score=102.98 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=84.3
Q ss_pred CeeeccCCcccccccccccC-----CCCCCEEEccCCCCccc--cccccCCCCCCeEEccCCCCCcCC-hhh-----hcC
Q 048779 1 MLLNSRHGYLAHSILPKLFK-----LQSLRVFSLRGYRISEL--PDSVGDLRYLRHLNLSGTEIRTLP-ESV-----NKL 67 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~L~L~~~~l~~lp-~~~-----~~L 67 (911)
+.|+|++|.++......+.. .+.|++|+|++|.++.- ......+++|++|+|++|.++... ..+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 46889999888655554422 26899999999988632 222345678889999999887432 223 246
Q ss_pred CCccEEecCCcccc----ccchhhhhccCcccEEEcCCCccccc-----CcCCCCCccccccccceecc
Q 048779 68 YNLHTLLLVGCRRL----KKLCADMGNLIKLHHLNNSNTDLLKE-----MPVGIGKLTCLQTLCNFVVG 127 (911)
Q Consensus 68 ~~L~~L~l~~~~~~----~~lp~~i~~L~~L~~L~L~~~~~~~~-----~p~~~~~L~~L~~L~~~~~~ 127 (911)
++|+.|++++|... ..++..+..+++|++|+|++|. ++. ++..+...++|++|+.....
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 78999999987432 2344556778889999999988 443 23345667778888655443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=5e-07 Score=97.04 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=88.4
Q ss_pred CeeeccCCcccccccccc-cCCCCCCEEEccCCCCccc-ccc----c-cCCCCCCeEEccCCCCCc-----CChhhhcCC
Q 048779 1 MLLNSRHGYLAHSILPKL-FKLQSLRVFSLRGYRISEL-PDS----V-GDLRYLRHLNLSGTEIRT-----LPESVNKLY 68 (911)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l-p~~----~-~~l~~L~~L~L~~~~l~~-----lp~~~~~L~ 68 (911)
+.|||++|.++......+ ..+++|+.|+|++|.++.. ... + ...++|++|+|++|.|+. ++..+...+
T Consensus 104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence 368999999887666666 5567899999999998743 222 2 356789999999998874 445567888
Q ss_pred CccEEecCCccccc----cchhhhhccCcccEEEcCCCccccc-----CcCCCCCccccccccceec
Q 048779 69 NLHTLLLVGCRRLK----KLCADMGNLIKLHHLNNSNTDLLKE-----MPVGIGKLTCLQTLCNFVV 126 (911)
Q Consensus 69 ~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~L~~~~~~~~-----~p~~~~~L~~L~~L~~~~~ 126 (911)
+|++|+|++|.... .++..+...++|++|+|++|. ++. ++..+...++|++|+....
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 99999999965322 234556778899999999998 443 2233445677888865443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=4.6e-06 Score=88.68 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=33.5
Q ss_pred ccccCCCcceEEeccCccccccCCCCCCCCCccEEeeccccCcccccccc--cCCCccCcEEeC
Q 048779 683 GLHNLRQLLEIKIWWCGNLVTFPEGGLPCAKLTRLEIYDCKRLEALPKGL--HNLKSLQELRIG 744 (911)
Q Consensus 683 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l--~~l~~L~~L~l~ 744 (911)
.+..+|+|++|.+++|..+ .++. ...++|++|.+..|..-......+ ..+|+|++|+++
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4455778888888776333 2333 236678888887654222111122 256777777764
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.8e-06 Score=78.75 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=46.9
Q ss_pred CcceEEEEeccccccccccccCCCCccEEEecCCCCccccCC--CCC----CCCCcEEEeccCCCCCccchhhhcCCCCC
Q 048779 474 RLEYLRLYICEGLVKLPQSLLSLSSLREIFIGGCNSLVSFPE--VAL----PSKLKKIEISECDALKSLPEAWMCDTNSS 547 (911)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~--~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 547 (911)
.|+.|++++|.....--..+..+++|++|++++|..+++-.- .+. .++|++|++++|..+++.....+ ..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence 455555555543222222345567777777777766654221 111 23566666666666665444333 34566
Q ss_pred ccEEEEecCCCCcc
Q 048779 548 LEILYIESCHSLRY 561 (911)
Q Consensus 548 L~~L~l~~c~~l~~ 561 (911)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666665554
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.04 E-value=0.00021 Score=77.21 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=43.8
Q ss_pred cccCCCCCccEEEeccCCCCCCCCCchhhhccccCcCCCCCCcceeeecCCCCcccccc-ccCCCCCcceEecccCCCcc
Q 048779 780 QGFHRFSSLRHLSIEGCDDDMVSFPPEAEDKRLGTALPLPASLTSMWIGDFPNLERLSS-SIVDLQNLTELRLHDCPKLK 858 (911)
Q Consensus 780 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~ 858 (911)
.+|.++++|+.+.+.++ .+..+++..+ ..+.+|+.+.+.. +++.+.. .+..+++|+.+.+.. .++
T Consensus 280 ~aF~~c~~L~~i~l~~~--~i~~I~~~aF--------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~ 345 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNS--AIETLEPRVF--------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SIT 345 (379)
T ss_dssp TTTTTCTTCCEEEECCT--TCCEECTTTT--------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCC
T ss_pred ccccccccccccccccc--ccceehhhhh--------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccC
Confidence 56788888888888752 3455554432 4567788877753 4677765 566667777766642 345
Q ss_pred ccCC
Q 048779 859 YFPE 862 (911)
Q Consensus 859 ~l~~ 862 (911)
.|..
T Consensus 346 ~I~~ 349 (379)
T 4h09_A 346 LIES 349 (379)
T ss_dssp EECT
T ss_pred EEch
Confidence 5544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=3.7e-06 Score=80.37 Aligned_cols=109 Identities=16% Similarity=0.115 Sum_probs=69.3
Q ss_pred cccccCCCCCCEEEccCC-CCcc-----ccccccCCCCCCeEEccCCCCCc-----CChhhhcCCCccEEecCCcccccc
Q 048779 15 LPKLFKLQSLRVFSLRGY-RISE-----LPDSVGDLRYLRHLNLSGTEIRT-----LPESVNKLYNLHTLLLVGCRRLKK 83 (911)
Q Consensus 15 ~~~~~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~ 83 (911)
...+...+.|++|+|++| .++. +...+...+.|++|+|++|.|.. +...+...+.|++|+|++|.....
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334466778888888888 7652 44556677788888888887763 344466667788888888643322
Q ss_pred ----chhhhhccCcccEEEc--CCCccccc-----CcCCCCCccccccccce
Q 048779 84 ----LCADMGNLIKLHHLNN--SNTDLLKE-----MPVGIGKLTCLQTLCNF 124 (911)
Q Consensus 84 ----lp~~i~~L~~L~~L~L--~~~~~~~~-----~p~~~~~L~~L~~L~~~ 124 (911)
+...+...++|++|++ ++|. ++. +...+...++|++|+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEecc
Confidence 3445566677888888 6677 332 22234445667777543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00057 Score=73.86 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=39.9
Q ss_pred cCcceEEEEeccccccccc-cccCCCCccEEEecCCCCccccCCCCC-CCCCcEEEeccCCCCCccchhhhcCCCCCccE
Q 048779 473 CRLEYLRLYICEGLVKLPQ-SLLSLSSLREIFIGGCNSLVSFPEVAL-PSKLKKIEISECDALKSLPEAWMCDTNSSLEI 550 (911)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 550 (911)
.+|+.+.+.. .++.++. .+.+|.+|+++.+.. .++.+...++ -.+|+.+.+.. .++.+....| .. .+|+.
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~--~l~~I~~~aF-~~-~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGME--RVKKFGDYVF-QG-TDLDD 117 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECT--TCCEECTTTT-TT-CCCSE
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCc--eeeEecccee-cc-CCccc
Confidence 4555555532 3344432 466677777777754 3556655444 22455555532 3555555554 22 25777
Q ss_pred EEEec
Q 048779 551 LYIES 555 (911)
Q Consensus 551 L~l~~ 555 (911)
+.+.+
T Consensus 118 i~lp~ 122 (379)
T 4h09_A 118 FEFPG 122 (379)
T ss_dssp EECCT
T ss_pred ccCCC
Confidence 76643
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=2.7e-06 Score=85.36 Aligned_cols=105 Identities=23% Similarity=0.159 Sum_probs=61.3
Q ss_pred cCCCCCCE--EEccCCCCcccccc----ccCCCCCCeEEccCCCCCcCC---hhhhcCCCccEEecCCccccccchhhhh
Q 048779 19 FKLQSLRV--FSLRGYRISELPDS----VGDLRYLRHLNLSGTEIRTLP---ESVNKLYNLHTLLLVGCRRLKKLCADMG 89 (911)
Q Consensus 19 ~~l~~L~~--L~L~~n~l~~lp~~----~~~l~~L~~L~L~~~~l~~lp---~~~~~L~~L~~L~l~~~~~~~~lp~~i~ 89 (911)
...+.|+. ++++.|....++.. ..++++|++|+|++|+|+.++ ..+..+++|+.|+|++| .+..+ ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhh
Confidence 33344444 55566654433322 245677777777777777553 44567777777777774 34444 3344
Q ss_pred ccC--cccEEEcCCCcccccCcC-------CCCCcccccccccee
Q 048779 90 NLI--KLHHLNNSNTDLLKEMPV-------GIGKLTCLQTLCNFV 125 (911)
Q Consensus 90 ~L~--~L~~L~L~~~~~~~~~p~-------~~~~L~~L~~L~~~~ 125 (911)
.+. +|++|++++|.+...+|. .+..+++|+.|+...
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 444 777777777775554542 145667777775433
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.1e-05 Score=74.81 Aligned_cols=90 Identities=9% Similarity=0.224 Sum_probs=54.6
Q ss_pred CCcceEEeccCCCcchhcccccchhhccCCCCeEeEccCCCcccchhhhhHHHHhhhcc---cccCcceEEEEecccccc
Q 048779 412 PKLEELGINNIKNETCIWKSHTELLQDICSLKRLTITSCSKLQSLVAEEEEDQRQKLCE---FSCRLEYLRLYICEGLVK 488 (911)
Q Consensus 412 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~ 488 (911)
.+|++|++++|. +++. ....+..+++|++|++++|..+++- .+..+.. ..++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD~-------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIEDG-------CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCHH-------HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCHH-------HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 368888888887 4443 3345678888888888888877662 2222222 124577777777765443
Q ss_pred c-cccccCCCCccEEEecCCCCccc
Q 048779 489 L-PQSLLSLSSLREIFIGGCNSLVS 512 (911)
Q Consensus 489 ~-~~~l~~l~~L~~L~l~~c~~l~~ 512 (911)
- -..+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 1 12344566666666666666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.9e-06 Score=86.56 Aligned_cols=80 Identities=26% Similarity=0.317 Sum_probs=63.5
Q ss_pred cCCCCCCEEEccCCCCccc---cccccCCCCCCeEEccCCCCCcCChhhhcCC--CccEEecCCccccccch-------h
Q 048779 19 FKLQSLRVFSLRGYRISEL---PDSVGDLRYLRHLNLSGTEIRTLPESVNKLY--NLHTLLLVGCRRLKKLC-------A 86 (911)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~~l~~lp~~~~~L~--~L~~L~l~~~~~~~~lp-------~ 86 (911)
..+++|++|+|++|.|+.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|+.|++++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999999865 35667899999999999999977 4455555 99999999976554444 3
Q ss_pred hhhccCcccEEEc
Q 048779 87 DMGNLIKLHHLNN 99 (911)
Q Consensus 87 ~i~~L~~L~~L~L 99 (911)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4678999999873
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=1.4e-05 Score=85.01 Aligned_cols=11 Identities=18% Similarity=-0.185 Sum_probs=7.3
Q ss_pred ccccceEeeec
Q 048779 603 SSLLEHLGIRY 613 (911)
Q Consensus 603 ~~~L~~L~l~~ 613 (911)
+++|+.|.+.+
T Consensus 138 l~~L~~L~l~~ 148 (362)
T 2ra8_A 138 FAHFEGLFWGD 148 (362)
T ss_dssp HTTCSEEEECC
T ss_pred cchhhheeecC
Confidence 66777776654
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.1e-05 Score=77.01 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=75.4
Q ss_pred CeeeccCC-cccccc----cccccCCCCCCEEEccCCCCcc-----ccccccCCCCCCeEEccCCCCCc-----CChhhh
Q 048779 1 MLLNSRHG-YLAHSI----LPKLFKLQSLRVFSLRGYRISE-----LPDSVGDLRYLRHLNLSGTEIRT-----LPESVN 65 (911)
Q Consensus 1 ~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~~~l~~-----lp~~~~ 65 (911)
+.|+|++| ++.... ...+...+.|++|+|++|.|+. +...+...+.|++|+|++|.|+. +...+.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 46889988 887643 3445667889999999998863 44556667889999999998884 456677
Q ss_pred cCCCccEEec--CCcccccc----chhhhhccCcccEEEcCCCc
Q 048779 66 KLYNLHTLLL--VGCRRLKK----LCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 66 ~L~~L~~L~l--~~~~~~~~----lp~~i~~L~~L~~L~L~~~~ 103 (911)
..+.|++|++ ++|..... +...+...++|++|++++|.
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 7888999999 66543322 33445667889999999888
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0069 Score=53.29 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=39.2
Q ss_pred CEEEccCCCCc--cccccccCCCCCCeEEccCCCCCcCChh-hhcCCCccEEecCCc
Q 048779 25 RVFSLRGYRIS--ELPDSVGDLRYLRHLNLSGTEIRTLPES-VNKLYNLHTLLLVGC 78 (911)
Q Consensus 25 ~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~L~~L~~L~l~~~ 78 (911)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|.. |..+++|+.|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 46777888877 7775432 3588888888888888754 788888888888885
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.89 E-value=0.013 Score=51.57 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=30.8
Q ss_pred eEEccCCCCC--cCChhhhcCCCccEEecCCccccccchhh-hhccCcccEEEcCCCc
Q 048779 49 HLNLSGTEIR--TLPESVNKLYNLHTLLLVGCRRLKKLCAD-MGNLIKLHHLNNSNTD 103 (911)
Q Consensus 49 ~L~L~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~L~~~~ 103 (911)
+++-++++++ .+|..+. .+|+.|+|++ |.+..+|.. |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 5666666666 6664322 3466667766 345555533 5666666777666665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.84 E-value=0.0077 Score=56.81 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=56.6
Q ss_pred cCCCCCCEEEccCC-CCcc-----ccccccCCCCCCeEEccCCCCC-----cCChhhhcCCCccEEecCCccccccc---
Q 048779 19 FKLQSLRVFSLRGY-RISE-----LPDSVGDLRYLRHLNLSGTEIR-----TLPESVNKLYNLHTLLLVGCRRLKKL--- 84 (911)
Q Consensus 19 ~~l~~L~~L~L~~n-~l~~-----lp~~~~~l~~L~~L~L~~~~l~-----~lp~~~~~L~~L~~L~l~~~~~~~~l--- 84 (911)
..-+.|+.|+|++| .|.. +-.++..-+.|+.|+|++|.|. .|.+.+..-+.|+.|+|++|......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567888888875 6652 4455666778888888888877 33445666778888888886543222
Q ss_pred -hhhhhccCcccEEEcCCCc
Q 048779 85 -CADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 85 -p~~i~~L~~L~~L~L~~~~ 103 (911)
-+.+..-+.|++|+|+++.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 2334445668888887653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.08 E-value=0.063 Score=50.55 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=29.8
Q ss_pred cCCCCCCeEEccCC-CCC-----cCChhhhcCCCccEEecCCccccc----cchhhhhccCcccEEEcCCCc
Q 048779 42 GDLRYLRHLNLSGT-EIR-----TLPESVNKLYNLHTLLLVGCRRLK----KLCADMGNLIKLHHLNNSNTD 103 (911)
Q Consensus 42 ~~l~~L~~L~L~~~-~l~-----~lp~~~~~L~~L~~L~l~~~~~~~----~lp~~i~~L~~L~~L~L~~~~ 103 (911)
.+-+.|+.|+|+++ .|. .+-+.+..-+.|+.|+|++|..-. .+.+.+..-+.|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34455666666553 444 123334445556666666543221 112223334556666666655
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.24 E-value=51 Score=26.66 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.2
Q ss_pred cccCCCccCcEEeCCccCccccCCCCCCCCCceEEecccchhhhhhhcCcccCCCCCccEEEecc
Q 048779 731 GLHNLKSLQELRIGGELPSLEEDDGLPTDLRSLEIIFNTKIWKSMIERGQGFHRFSSLRHLSIEG 795 (911)
Q Consensus 731 ~l~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~ 795 (911)
.+.++.+|+.+.+...+..+.. .+|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~v~~Ig~---------------------------~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNIGLLYD---------------------------GMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTTSSCCCT---------------------------TSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCchheEcH---------------------------HHHhccCCccEEEEcC
Confidence 4566777777777655555544 6778888888888776
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.16 E-value=1.3e+02 Score=24.16 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCccc-cccccCCCCCCeEEccCCCCCcCC-hhhhcCCCccEEecCC
Q 048779 32 YRISEL-PDSVGDLRYLRHLNLSGTEIRTLP-ESVNKLYNLHTLLLVG 77 (911)
Q Consensus 32 n~l~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~L~~L~~L~l~~ 77 (911)
..++.| ..+|.++..|+.+.+-.+ ++.+. .+|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334444 345555666666655443 34443 2355555555555554
Done!