BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048780
(325 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 218/387 (56%), Gaps = 65/387 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GF IL ++PN+VT+N+LIKGLC E RI EA RLF ++ C P+V+T+
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178
Query: 63 TLAL---------VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKDGF-------- 102
TL +AL L +EM+N+ + + CKP+V+T I+DGLCK G
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238
Query: 103 ------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
M+DQG++PD+VT NV+ D L K+GK+ EA LL VMI+ + P+ TY
Sbjct: 239 EEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY 298
Query: 151 NTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
N+L++GF + SKGC DV SYN+LINGY K VE+A+ L EML
Sbjct: 299 NSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLL 358
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
G R + TY++L M + + +S+ Y ++DGL KN + E
Sbjct: 359 VGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFE 418
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
AMK+F+ + + L IE NCLIDGLCK G+L+ AW++F L N G P+VVTY IMI
Sbjct: 419 AMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL-SNEGHEPNVVTYTIMI 477
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
HGFC+EGQ KAN L+ ME G P+
Sbjct: 478 HGFCREGQVDKANVLIQKMEANGCTPD 504
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 49/300 (16%)
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
T N A AL+ F M+ P + + +++ GL K M G+
Sbjct: 45 TGNVTATHALHFFHLMMRSTPT---PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS 101
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
D TLN++ + L ++ E +++R +PN TYNTL+ G +
Sbjct: 102 SDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRL 161
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
GC DV +Y LI G C N+ A+ L +EML++ R + N
Sbjct: 162 FLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI-----------N 210
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT----------IETCNCLIDGL 265
P+ Y +DGL K G EA ++F + + + T N LID L
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTL 270
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK G++ A + +++++ G+ PD+VTYN +I GFC G A L + M G EP+
Sbjct: 271 CKEGKVIEAKKLLGVMIES-GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPD 329
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 91/335 (27%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+MVTFN LI LC EG+++EA +L + P+++T+N+L A
Sbjct: 256 LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAR 315
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
LF M ++ C+PDV++ +I+G K M+ G RP+V+T + +
Sbjct: 316 ELFVSMPSKG---CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 372
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------------- 157
+ GK+++A L VM + N+ TY +DG
Sbjct: 373 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 432
Query: 158 ---------------------AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
AW ++G +V +Y I+I+G+C++ V+ A L
Sbjct: 433 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 492
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
++M + G D TYNTL + G Y++ + E +++ +
Sbjct: 493 IQKMEANGCTPDIITYNTL-----------------MRGFYESNKLEEVVQLLHRMAQKD 535
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
TC+ ++D L K + + + H+L + P
Sbjct: 536 VSPDAITCSIVVDMLSKDEKYQ---ECLHLLPRFP 567
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 43/215 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF-------- 61
L +L+ PN++T++SL+KG+ G++ +A +LF + N T+
Sbjct: 352 LYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLC 411
Query: 62 -NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRP 110
N A+ LF E+ + K ++ +IDGLCK G + ++G P
Sbjct: 412 KNDCLFEAMKLFTELKSSN---FKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP 468
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+VVT +M ++G++++AN L++ M P+ TYNTLM GF +K
Sbjct: 469 NVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK-------- 520
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+E+ V L M + + DA T
Sbjct: 521 -------------LEEVVQLLHRMAQKDVSPDAIT 542
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ PN+VT+ +I G C EG++ +A L +K+ C P++IT+
Sbjct: 449 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 508
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD 100
NTL N EE+V + + PD +TC+ ++D L KD
Sbjct: 509 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKD 553
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/412 (40%), Positives = 216/412 (52%), Gaps = 90/412 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S + IL + PN+VT+ +LIKGLC E RI EA RLF ++ C PN +T+
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200
Query: 63 TLAL---------VALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCK----------- 99
TL +AL L +EM+N ++GV CKP V+T + IIDGLCK
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELF 260
Query: 100 -------------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKD 125
GF M+DQG++PD+VT +V+ D L K+
Sbjct: 261 EEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKE 320
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA LLEVMIQR + PN TYN+L+DGF + SKG D SY
Sbjct: 321 GKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
LINGYCK V++A++L EML G + TTY TL M
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKT 440
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V +S +Y ++DGL KN + EAM++F+ + ++ L IE +CLIDGLCK G+L+
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLET 500
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW++F L Q GL PDVVTYNIMIHGFCK GQ AN L MEE G P+
Sbjct: 501 AWELFEKLSQE-GLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPD 551
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 133/293 (45%), Gaps = 39/293 (13%)
Query: 57 NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
N T N A+ A + F+ M+ + P + + ++ GL K M
Sbjct: 64 NCKTGNITAIQAFHFFDLMMRSHPI---PPISSFNRLLGGLAKINHYSQLFSLYNEMRLA 120
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ PD+ TL+++ + L ++ EA + +++R PN TY TL+ G +
Sbjct: 121 GLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
GC + +Y LI G C+ NV A+ L +EML+ DA+ Y
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLN-----DASQYGV---- 231
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N P Y+ IDGL K G EA ++F + + + + + LI G C G+
Sbjct: 232 --NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWD 289
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F M + G+ PD+VT++++I CKEG+ +A LL M + G+ PN
Sbjct: 290 QSKHLFDE-MVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPN 341
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 129/326 (39%), Gaps = 88/326 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----LV-----ALNL 71
P+MVTF+ LI LC EG++ EA +L + + PN+IT+N+L +V A L
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
F M ++ G+ +PD ++ T +I+G CK M+ G P+V T +
Sbjct: 365 FLSMPSK-GL--EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKG 421
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------------------ 157
L + GK+ +A L VM V+ N+ Y +DG
Sbjct: 422 LFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLN 481
Query: 158 -------------------AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
AW +G + DV +YNI+I+G+CK V++A L
Sbjct: 482 IENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFE 541
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+M G D YNTL G + + E +K+ +
Sbjct: 542 KMEENGCTPDIIAYNTLLC-----------------GFCEGNKLEEVIKLLHKMVQKDVS 584
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIF 278
+C ++D LCK + K D+
Sbjct: 585 PNAASCTIVVDMLCKDEKYKKFVDLL 610
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 43/205 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALN 70
+PN+ T+ +L+KGL +G++ +A +LF + + N + N A+
Sbjct: 409 SPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAME 468
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
LF E+ + + +C +IDGLCK G + +G++PDVVT N+M
Sbjct: 469 LFNEL-KSYNFKLNIENYSC--LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIH 525
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
K G+++ AN L E M + P D+ +YN L+ G+C+
Sbjct: 526 GFCKVGQVDNANILFEKMEENGCTP---------------------DIIAYNTLLCGFCE 564
Query: 181 DRNVEDAVSLCREMLSEGIRADATT 205
+E+ + L +M+ + + +A +
Sbjct: 565 GNKLEEVIKLLHKMVQKDVSPNAAS 589
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ P++VT+N +I G C G++ A LF+K+ C P++I +
Sbjct: 496 GKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAY 555
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD 100
NTL N EE++ + + P+ +CT ++D LCKD
Sbjct: 556 NTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKD 600
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 161/412 (39%), Positives = 219/412 (53%), Gaps = 90/412 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GF IL ++PN+VT+N+LIKGLC E RI EA RLF ++ C P+V+T+
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178
Query: 63 TLAL---------VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCK----------- 99
TL +AL L +EM+N+ + + CKP+V+T I+DGLCK
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238
Query: 100 -------------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKD 125
GF M+DQG++PD+VT NV+ D L K+
Sbjct: 239 EEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKE 298
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA LL VMI+ + P+ TYN+L++GF + SKGC DV SY
Sbjct: 299 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 358
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N+LINGY K VE+A+ L EML G R + TY++L M
Sbjct: 359 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 418
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ + +S+ Y ++DGL KN + EAMK+F+ + + L IE NCLIDGLCK G+L+
Sbjct: 419 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 478
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW++F L N G P+VVTY IMIHGFC+EGQ KAN L+ ME G P+
Sbjct: 479 AWELFEKL-SNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPD 529
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
T N A AL+ F M+ P + + +++ GL K M G+
Sbjct: 45 TGNVTATHALHFFHLMMRSTPT---PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS 101
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
D TLN++ + L ++ E +++R +PN TYNTL+ G +
Sbjct: 102 SDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRL 161
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
GC DV +Y LI G C N+ A+ L +EML++ R + N
Sbjct: 162 FLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI-----------N 210
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y +DGL K G EA ++F + + +I + N LI G C G+ W
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGK----W 266
Query: 276 DIFHML---MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L M + GL PD+VT+N++I CKEG+ +A LL M E+G+ P+
Sbjct: 267 EESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 319
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 91/344 (26%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL +L P+MVTFN LI LC EG+++EA +L + P+++T+N+L
Sbjct: 272 LLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFC 331
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
A LF M ++ C+PDV++ +I+G K M+ G RP
Sbjct: 332 MVGDLNSARELFVSMPSKG---CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRP 388
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V+T + + + GK+++A L VM + N+ TY +DG
Sbjct: 389 NVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLF 448
Query: 158 ------------------------------AW------WSKGCRHDVYSYNILINGYCKD 181
AW ++G +V +Y I+I+G+C++
Sbjct: 449 TELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCRE 508
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
V+ A L ++M + G D TYNTL + G Y++ + E ++
Sbjct: 509 GQVDKANVLIQKMEANGCTPDIITYNTL-----------------MRGFYESNKLEEVVQ 551
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ + TC+ ++D L K + + + H+L + P
Sbjct: 552 LLHRMAQKDVSPDAITCSIVVDMLSKDEKYQ---ECLHLLPRFP 592
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ PN+VT+ +I G C EG++ +A L +K+ C P++IT+
Sbjct: 474 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD 100
NTL N EE+V + + PD +TC+ ++D L KD
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKD 578
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 215/404 (53%), Gaps = 82/404 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G ++ IL + P++VT+ +LIKGLC E RI +AA LF ++ C PN IT+
Sbjct: 146 RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205
Query: 63 TLAL---------VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKD---------- 100
TL +AL L +EM+N+ +G+ KP V++ + IID LCKD
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265
Query: 101 ---------------------------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
M++QG++P+VVT NV+ D L K+GK+ EA
Sbjct: 266 EEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKD 325
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
LLEVMIQR + PN TYN+L++GF + SKGC DV Y +LINGYC
Sbjct: 326 LLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYC 385
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K VE+A+ L ML G R D TY L M + +P D +
Sbjct: 386 KTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLY 445
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+Y +++GL KNG + EAM++F+ + ++ L IE NCLIDGLCK G+L+ AW++F L
Sbjct: 446 IYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKL 505
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q L PDVVTYNIMIH FC+ GQ KAN L ME+ G P+
Sbjct: 506 PQEE-LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPD 548
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 140/344 (40%), Gaps = 79/344 (22%)
Query: 57 NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ---- 106
N T N A+ A F M+ P + + T+++ GL K ++ +Q
Sbjct: 69 NCKTGNITAIQAFQFFHLMMYSNPT---PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLS 125
Query: 107 GMRPDVVTLNVMTD---NLSKDG--------------------------------KMEEA 131
G+ PD TLN++ + N+++ G ++ +A
Sbjct: 126 GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKA 185
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------------AWWSKGCRHDVYSY 171
L M + PN TY TLM G + + + V SY
Sbjct: 186 ALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISY 245
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAINNVPPDSH 221
+I+I+ CKDR ++A L EM +G+ +Y +L M V P+
Sbjct: 246 SIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVV 305
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ ID L K G V+EA + + V + T N LI+G C +G L A ++F +
Sbjct: 306 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF-VS 364
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PDV+ Y ++I+G+CK + ++A L M + G P+
Sbjct: 365 MPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPD 408
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 108/257 (42%), Gaps = 71/257 (27%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----LV-----ALNL 71
PN+VTFN LI LC EG+++EA L + + PN++T+N+L LV A L
Sbjct: 302 PNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 361
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M ++ C+PDV+ T +I+G CK M+ G RPDV T +
Sbjct: 362 FVSMPSKG---CEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 418
Query: 122 LSKDGKMEEAN-----------------------------CLLEVM------IQRDVNPN 146
L + GK+ +A CL E M ++ +
Sbjct: 419 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 478
Query: 147 TCTYNTLMDGF--------AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+N L+DG AW + + DV +YNI+I+ +C+ V A L +
Sbjct: 479 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 538
Query: 193 EMLSEGIRADATTYNTL 209
+M G D TY TL
Sbjct: 539 KMEKNGCTPDKITYATL 555
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 102/261 (39%), Gaps = 71/261 (27%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ PN++T+NSLI+G C G + A LF + C+P+VI + L
Sbjct: 326 LLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYC 385
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNII-------------------------- 94
A+ L+ M+ V +PDV T ++
Sbjct: 386 KTSKVEEAMKLYNGMLQ---VGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPG 442
Query: 95 ---------DGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+GLCK+G + + ++ D+ N + D L K GK+E A L
Sbjct: 443 DLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELF 502
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
E + Q ++ P+ TYN ++ F + GC D +Y LI G+ +
Sbjct: 503 EKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFES 562
Query: 182 RNVEDAVSLCREMLSEGIRAD 202
+ +E V L M+ + D
Sbjct: 563 KKLEKVVELLHMMVQRDVSLD 583
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ P++VT+N +I C G++++A LF+K+ C P+ IT+
Sbjct: 493 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 552
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNII 94
TL E++V ++ + DV NI+
Sbjct: 553 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 587
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 217/412 (52%), Gaps = 90/412 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G ++ IL + P++VT+ +LIKGLC E RI +AA LF ++ C PN IT+
Sbjct: 146 RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205
Query: 63 TLAL---------VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKD---------- 100
TL +AL L +EM+N+ +G+ KP V++ + IID LCKD
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265
Query: 101 --------------------GF---------------MMDQGMRPDVVTLNVMTDNLSKD 125
GF M++QG++P+VVT NV+ D L K+
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA LLEVMIQR + PN TYN+L++GF + SKGC DV Y
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
+LINGYCK VE+A+ L ML G R D TY L M +
Sbjct: 386 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 445
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+P D ++Y +++GL KNG + EAM++F+ + ++ L IE NCLIDGLCK G+L+
Sbjct: 446 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 505
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW++F L Q L PDVVTYNIMIH FC+ GQ KAN L ME+ G P+
Sbjct: 506 AWELFEKLPQEE-LQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPD 556
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 138/317 (43%), Gaps = 52/317 (16%)
Query: 57 NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ---- 106
N T N A A F M+ P + + T+++ GL K ++ +Q
Sbjct: 69 NCKTGNITATQAFQFFHLMMYSNPT---PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLS 125
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---------- 156
G+ PD TLN++ + L ++ E ++ +++R P+ TY TL+ G
Sbjct: 126 GISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKA 185
Query: 157 ---FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG------IRADATTY 206
F K GC + +Y L+ G C+ N+ A+ L +EML++ + +Y
Sbjct: 186 ALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISY 245
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ + M + + P YT+ I G G EA ++F+ + N
Sbjct: 246 SIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVN 305
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T N LID LCK G++ A D+ +++Q G+ P+++TYN +I GFC G
Sbjct: 306 QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQR-GIVPNLLTYNSLIEGFCLVGDLN 364
Query: 309 KANGLLLDMEETGLEPN 325
A L + M G EP+
Sbjct: 365 SARELFVSMPSKGCEPD 381
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 108/257 (42%), Gaps = 71/257 (27%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----LV-----ALNL 71
PN+VTFN LI LC EG+++EA L + + PN++T+N+L LV A L
Sbjct: 310 PNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSAREL 369
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M ++ C+PDV+ T +I+G CK M+ G RPDV T +
Sbjct: 370 FVSMPSKG---CEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTG 426
Query: 122 LSKDGKMEEAN-----------------------------CLLEVM------IQRDVNPN 146
L + GK+ +A CL E M ++ +
Sbjct: 427 LFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLD 486
Query: 147 TCTYNTLMDGF--------AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+N L+DG AW + + DV +YNI+I+ +C+ V A L +
Sbjct: 487 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 546
Query: 193 EMLSEGIRADATTYNTL 209
+M G D TY TL
Sbjct: 547 KMEKNGCTPDKITYATL 563
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 102/261 (39%), Gaps = 71/261 (27%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ PN++T+NSLI+G C G + A LF + C+P+VI + L
Sbjct: 334 LLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYC 393
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNII-------------------------- 94
A+ L+ M+ V +PDV T ++
Sbjct: 394 KTSKVEEAMKLYNGMLQ---VGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPG 450
Query: 95 ---------DGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+GLCK+G + + ++ D+ N + D L K GK+E A L
Sbjct: 451 DLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELF 510
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
E + Q ++ P+ TYN ++ F + GC D +Y LI G+ +
Sbjct: 511 EKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFES 570
Query: 182 RNVEDAVSLCREMLSEGIRAD 202
+ +E V L M+ + D
Sbjct: 571 KKLEKVVELLHMMVQRDVSLD 591
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ P++VT+N +I C G++++A LF+K+ C P+ IT+
Sbjct: 501 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 560
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNII 94
TL E++V ++ + DV NI+
Sbjct: 561 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNIL 595
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 216/377 (57%), Gaps = 55/377 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + G + I+ + P++VTF +LIKGLC E RI+EA +LF ++ C PNV+T+
Sbjct: 141 RINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYG 200
Query: 63 TL-----AL----VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKDG--------- 101
TL AL +AL +EM+N+ + C+P+V++ + IIDGLCK G
Sbjct: 201 TLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLF 260
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+DQG++P+VVT +V+ D L K+G++ +A LLE+MIQ + PN TY +L+ GF
Sbjct: 261 NEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLV 320
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ SKG DV SYN+LINGYCK VE+A+ L EML G+ D T
Sbjct: 321 GDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTS 380
Query: 207 NTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L A+ +P D + ++DGL KNG++ EAMK+F+ + +
Sbjct: 381 GVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELES 440
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ L IET CLIDGLCK G+L+ AW++F L + G+ PD + Y+ MIHGFCK+GQ
Sbjct: 441 YNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE-GIQPDAMAYSSMIHGFCKKGQVD 499
Query: 309 KANGLLLDMEETGLEPN 325
KAN L MEE G P+
Sbjct: 500 KANILFQKMEENGCSPD 516
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---------- 156
G+ PD++TLN++ + L ++ E + +++R P+ T+ TL+ G
Sbjct: 121 GLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEA 180
Query: 157 ---FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
F K GC +V +Y LI G C N+ A+ +EML+ D + Y
Sbjct: 181 TKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLN-----DTSPY------ 229
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ N P+ Y+ IDGL K G EA+ +F+ + + + T + LID LCK G++
Sbjct: 230 VFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVI 289
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M++Q G+ P++ TY +I GFC G A L + M G EP+
Sbjct: 290 KAKKLLEMMIQ-IGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPD 341
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 65/270 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN+ T+ SLIKG C G + A LF + +P+VI++
Sbjct: 286 GQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISY 345
Query: 62 NTL---------ALVALNLFEEMVN---------------------------EFGVICKP 85
N L A+ LF EM++ E + KP
Sbjct: 346 NMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKP 405
Query: 86 -----DVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEE 130
D+ C +DGLCK+G++ + M+ D+ T + D L K GK+E
Sbjct: 406 YAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLET 465
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L E + + + P+ Y++++ GF GC D+ +Y+IL+
Sbjct: 466 AWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMR 525
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G+ + +E V L M+ + + D Y
Sbjct: 526 GFYESNKLEKVVQLLHRMIEKDVWPDDGIY 555
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 22/146 (15%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEF 79
+ GLC G I EA +LF +L + ++ TF L A LFE++ E
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEE- 476
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
G+ +PD + +++I G CK G M + G PD++T +++ + K+E
Sbjct: 477 GI--QPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLE 534
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMD 155
+ LL MI++DV P+ Y + D
Sbjct: 535 KVVQLLHRMIEKDVWPDDGIYAIVED 560
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ P+ + ++S+I G C +G++ +A LF+K+ C P++IT+
Sbjct: 461 GKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITY 520
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNII----DGLCKD 100
+ L N E++V + + DV I D +CKD
Sbjct: 521 SILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKD 565
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 159/408 (38%), Positives = 212/408 (51%), Gaps = 90/408 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G +LG +L +PN VTF SL+KGLC RI EA L +K+ PNV+T+ TL
Sbjct: 146 GLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLN 205
Query: 65 -------ALVALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKDGF------------ 102
++A+ L EEM+N FGV KP++V IID LCKDG
Sbjct: 206 GLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMK 265
Query: 103 ---------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
M+D+G+ P+VVT NV+ D L K GKME
Sbjct: 266 GRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKME 325
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EAN LL++MIQR +P+T TYNTL+DGF + SKG D SYN+LI
Sbjct: 326 EANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLI 385
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NGYCK + +A L REM+ + I TYNTL M ++++
Sbjct: 386 NGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT 445
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+S Y +DGL KN + EAM++F + NH +I+ NCLIDGLCK +++IA ++
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F+ L + GL P+V+TY +MIHG CK GQ + A L L MEE G PN
Sbjct: 506 FNRL-SHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPN 552
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/415 (23%), Positives = 172/415 (41%), Gaps = 96/415 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S F + ++ TP + +FN+L+ + R + L+K++++ P+ IT N
Sbjct: 72 KRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLN 131
Query: 63 TLALVALNLFEEMVNEFGVIC---------KPDVVTCTNIIDGLCKDGF----------M 103
L NL + +FG+ P+ VT T+++ GLC M
Sbjct: 132 ILINCYCNLNKV---DFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKM 188
Query: 104 MDQGMRPDVVTLNVM-----------------------------------------TDNL 122
+ G RP+VVT + D+L
Sbjct: 189 VRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSL 248
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS-----------KGCRHDV 168
KDG +++ L M R ++P+ Y++++ G W +G +V
Sbjct: 249 CKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNV 308
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
++N+LI+ CK +E+A L + M+ G D TYNTL
Sbjct: 309 VTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVS 368
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + D+ Y I+G K+G ++EA K++ + + + T+ T N L+ GL + G+
Sbjct: 369 MESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK 428
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ AW++F M+ LTP+ TYNI++ G CK +A L +E +P+
Sbjct: 429 VRDAWNLFGE-MKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPS 482
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 146/344 (42%), Gaps = 60/344 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRIL--EAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77
P+ + +K C G I EA +F L P + +FNTL L ++
Sbjct: 52 APDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTL----LGAVAKIKR 107
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
F VI L K ++ G+ PD +TLN++ + K++ +L
Sbjct: 108 YFDVI-------------SLYKRMSLI--GLAPDFITLNILINCYCNLNKVDFGLAVLGE 152
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRN 183
M++R +PNT T+ +L+ G S+ G R +V +Y L+NG C N
Sbjct: 153 MLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGN 212
Query: 184 VEDAVSLCREMLSEG------IRADATTYNTLF------------------MAINNVPPD 219
AV L EML+ I+ + Y T+ M + PD
Sbjct: 213 TMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD 272
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y++ I G+ G A +F+ + + + T N LID LCK G+++ A +
Sbjct: 273 VVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+++Q G +PD TYN +I GFC EG+ A L + ME G+E
Sbjct: 333 LMIQR-GESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P ++T+N+L+ GL EG++ +A LF ++ V P T+N L L N E +
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470
Query: 79 FGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + +P + +IDGLCK + +G+ P+V+T VM L K
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G++E A L M ++ PN T+NTLM GF C++ +
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF---------------------CQNDEM 569
Query: 185 EDAVSLCREMLSEGIRADATT 205
+ V L +EM + DA+T
Sbjct: 570 QKVVELLQEMAEKDFSPDAST 590
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F P++ FN LI GLC +I A LF +L+ +PNVIT+ + L E
Sbjct: 479 FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAK 538
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDNL 122
+ F + C P++VT ++ G C++ M ++ PD T++++ D L
Sbjct: 539 DLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLL 598
Query: 123 SKDGKMEE 130
SKD K E
Sbjct: 599 SKDEKYRE 606
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 158/405 (39%), Positives = 212/405 (52%), Gaps = 83/405 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GFV+ G IL + PN TF +L+KGLC EG+I EA R+FK + VF C P+ IT
Sbjct: 157 RVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCG 216
Query: 63 TL---------ALVALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGF-------- 102
L AL L E M+N +FG+ CKP VV+ + IID LCKDG
Sbjct: 217 VLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFF 276
Query: 103 -------------------------------------MMDQGMRPDVVTLNVMTDNLSKD 125
M+D G+ PDVVT +V+ L K
Sbjct: 277 VEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKV 336
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK++EA+ L ++M+QR V P+T TYN L++G+ + +K C+HD SY
Sbjct: 337 GKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------LF--MAINNVPPDS--- 220
+IL+ YCKD V A+ L REM+ GI+ TY+ LF + ++ DS
Sbjct: 397 SILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSISY 456
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+Y Y+DGL KNG V EA+ VF + N K + N LI+G+C+ +L+IAW++F+
Sbjct: 457 SIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNR 516
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L N L PDVVTY IMI+G CK GQ QKA L L+MEE G PN
Sbjct: 517 LC-NEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPN 560
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 39/282 (13%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNV 117
AL+ F +M++ + P + N+ L K G M G+ + ++LN+
Sbjct: 91 ALHFFNQMIH---MQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSIGLLKNFISLNI 147
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ + L ++ E + +++++ PNT T+ L+ G K
Sbjct: 148 LLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFD 207
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
CR + +LI+G C+ N +A+ L M++ N+ F N P Y
Sbjct: 208 CRPSAITCGVLISGLCRTGNTCNALKLHEAMING---------NSDFGI--NCKPTVVSY 256
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ ID L K+G V A + F + + T L+ GLC + A +F + M
Sbjct: 257 SCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLF-IEMV 315
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL PDVVT++++I CK G+ ++A+GL M + +EP+
Sbjct: 316 DHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPS 357
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 115/292 (39%), Gaps = 82/292 (28%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----ALVAL-----NL 71
P++VTF+ LI LC G++ EA+ LF + +P+ T+N L L + +
Sbjct: 321 PDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKI 380
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL------ 115
F MVN+ C+ D + + ++ CKD MMD+G++P V+T
Sbjct: 381 FLSMVNKR---CQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYSKVGDA 437
Query: 116 ----------------------NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
NV D L K+G + EA + + N +N+L
Sbjct: 438 RKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSL 497
Query: 154 MDG--------FAWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
++G AW ++ + DV +Y I+I G CK + A L EM +G
Sbjct: 498 INGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGC 557
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
+ T+NTL MA + PD+ +D L K+
Sbjct: 558 APNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKD 609
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L R+ P++VT+ +I GLC G+ +A LF ++ C PNV+TFNTL + L
Sbjct: 513 LFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTL-MRGL 571
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
L E +P +V + M + + PD TL ++ D L KD
Sbjct: 572 CLNSE---------RPKIVELLHK---------MAARKLSPDASTLLIVMDILLKDENYH 613
Query: 130 E 130
E
Sbjct: 614 E 614
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/377 (40%), Positives = 209/377 (55%), Gaps = 55/377 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I+ + P++VT+ SLIKGLC E RI EA RLF ++ C PNV+T+
Sbjct: 141 RVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYG 200
Query: 63 TLAL---------VALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGF-------- 102
TL +AL L +EM+N + + CKP++ + IID LCK G
Sbjct: 201 TLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLF 260
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+DQG+RPDVVT + + D L K+G + EA LE M+ R + P+ T+ +L++GF
Sbjct: 261 NEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLV 320
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ SKG DV SY +LI GYCK NVE+A+ L EML G D T+
Sbjct: 321 GDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTF 380
Query: 207 ----NTLFMA--------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
LF+A + VP + ++ + ++DGL KNG + EAM++F+ + +
Sbjct: 381 CVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKS 440
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ L IE+ NCLIDGLCK +L+ AW++F L Q GL PDVVTY IMI+GFCK GQ
Sbjct: 441 YNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQE-GLQPDVVTYCIMINGFCKNGQVD 499
Query: 309 KANGLLLDMEETGLEPN 325
AN L MEE G PN
Sbjct: 500 NANILFQMMEENGCTPN 516
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 59/300 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----LV-----ALNL 71
P++VTF++LI LC EG ++EA + + + + P++ TF +L LV A L
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKEL 329
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTD 120
F M ++ G +PDV++ T +I G CK F +++ M+ PD+ T V+
Sbjct: 330 FLSMPSK-GY--EPDVISYTVLIYGYCKT-FNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
L GK+ +A L V+ V N + +DG GC
Sbjct: 386 GLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLC--KNGCLFEAMELFNELKSYNM 443
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ D+ S+N LI+G CK R +E A L ++ EG++ D TY +
Sbjct: 444 KLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIM--------------- 488
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+G KNG V A +F + + C + T + L+ G K +L+ + H ++Q
Sbjct: 489 --INGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQK 546
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 95/291 (32%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +++ P++ TF SLI+G C G + A LF + +P+VI++ L
Sbjct: 294 FLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYC 353
Query: 67 ------VALNLFEEMVNE----------------------------FGVICKPDVVT--- 89
A+ L+ EM+ FGV+ KP V
Sbjct: 354 KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVV-KPHAVPKNL 412
Query: 90 --CTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
C+ +DGLCK+G + + M+ D+ + N + D L K K+E A L E
Sbjct: 413 YICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEK 472
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+ Q + P DV +Y I+ING+CK+ V++A
Sbjct: 473 LSQEGLQP---------------------DVVTYCIMINGFCKNGQVDNA---------- 501
Query: 198 GIRADATTYNTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
N LF M N P+ Y+ + G YKN + E +K+ +
Sbjct: 502 ---------NILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKM 543
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT-------------- 208
G + ++ NILIN C V + +S ++ G D TY +
Sbjct: 121 GLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEA 180
Query: 209 --LFMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH------KCVLTIETC 258
LF+ + + P+ Y T I GL + G + A+K+ + N C I +
Sbjct: 181 TRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSY 240
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +ID LCKIG+ K A +F+ M + G+ PDVVT++ +I CKEG +A L M
Sbjct: 241 NIIIDELCKIGKWKEAKRLFNE-MVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMM 299
Query: 319 ETGLEPN 325
G+ P+
Sbjct: 300 LRGIVPD 306
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 43/205 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDPNV--ITFNTLALVALNL 71
P+M TF L+KGL G++ +A +LF + N++ C + + N A+ L
Sbjct: 375 PDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMEL 434
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
F E+ + K D+ + +IDGLCK + +G++PDVVT +M +
Sbjct: 435 FNELKS---YNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMING 491
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K+G+++ AN L ++M + PN TY+ L+ GF K+
Sbjct: 492 FCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFY---------------------KN 530
Query: 182 RNVEDAVSLCREMLSEGIRADATTY 206
+E+ V L +M+ + + A+ Y
Sbjct: 531 NKLEEVVKLLHKMIQKDVSLAASIY 555
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L G + N+ + + GLC G + EA LF +L + ++ +F
Sbjct: 391 GKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESF 450
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A LFE++ E G+ +PDVVT +I+G CK+G
Sbjct: 451 NCLIDGLCKARKLETAWELFEKLSQE-GL--QPDVVTYCIMINGFCKNGQVDNANILFQM 507
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + G P+++T + + K+ K+EE LL MIQ+DV+ Y T+++ +
Sbjct: 508 MEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIY-TIVEDMVSKDE 566
Query: 163 GCRH 166
CR
Sbjct: 567 KCRE 570
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 204/375 (54%), Gaps = 68/375 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R S G + IL + P++VT+N+LIKGLC RI +V C I
Sbjct: 23 LNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRI----------SVATC----II 68
Query: 61 FNTLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
+ L V A +FEEM + G+I P+V++ ++++ G C G M+D
Sbjct: 69 IDGLCKVGHEDEAKEIFEEMKAQ-GMI--PNVISYSSLVHGFCCAGKLEESKRLFNEMVD 125
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
QG++P++V NV+ D L K+GK+ EA LLEV IQR + + TYN+L+DGF
Sbjct: 126 QGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSS 185
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ SKGC H+ SY ILINGYCK VE+A++L EM G R + TY+TL
Sbjct: 186 ARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLT 245
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + + DS +Y ++DGL KNG + EAM++F+ + ++ L
Sbjct: 246 GLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKL 305
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
E+ + LIDGLCK G+++IAW+ F L Q GL P+VVT NIMIHGFC+ Q KAN L
Sbjct: 306 DFESYSRLIDGLCKAGKVEIAWEFFKQLSQE-GLQPNVVTCNIMIHGFCRVEQVDKANIL 364
Query: 314 ---LLDMEETGLEPN 325
+ MEE G P+
Sbjct: 365 FEKMEKMEENGCTPD 379
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 27/239 (11%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+ PD+ TLN++ + L ++ E + +++R P+ TYNTL+ G CR
Sbjct: 5 GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGL------CRV 58
Query: 167 DVYSYN--ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
S I+I+G CK + ++A + EM ++G+ + +Y++L
Sbjct: 59 HRISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKR 118
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M V P+ + ID L K G V+EA K+ +L + T N LIDG C
Sbjct: 119 LFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFC 178
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
KIG L A +F + M + G + ++Y I+I+G+CK + ++A L +M + G PN
Sbjct: 179 KIGDLSSARKLF-LSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPN 236
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + +++ LI GLC G++ A FK+L+ PNV+T N M++
Sbjct: 303 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI-----------MIHG 351
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
F C+ + V NI+ K M + G PD++T N + + K+EE LL M
Sbjct: 352 F---CRVEQVDKANIL--FEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406
Query: 139 IQR 141
+R
Sbjct: 407 FKR 409
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ ++ GLC G A L K+ +P V+ +N
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + PDV T + + D K+GK+ EA L + M++R ++P+ TY++L++GF
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VE+ + + REM G+ + TYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPP+ Y T +DGL KNG + +AM VF + K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDVV YN MI GFC++G ++A+
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 557 ALFKEMKEDGTLPN 570
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 89/354 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++ TF++LI EG+++EA +L+ ++ DP+++T+
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A +FE MV++ C PDVVT +I G CK +G
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ + VT N++ L + G + A + + M+ V PN TYNTL+DG
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + + +Y+YNI+I G CK VED L + +G++ D YNT
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+I G C+
Sbjct: 542 ----------------------------------------------------MISGFCRK 549
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + A +F M+ G P+ YN +I ++G + + L+ +M G
Sbjct: 550 GSKEEADALFKE-MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P++VT+N+LIKG C R+ E +F++++ N +T+N L +A
Sbjct: 392 CF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F+EMV++ GV P+++T ++DGLCK+G ++ M P + T N+M
Sbjct: 451 QEIFKEMVSD-GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V P+ YNT++ GF KG + + +
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC--RKGSKEEADALFKEMKED 565
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + E + L +EM S G DA+T + N+ D +
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLHDGRL 621
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 622 DKSFLDML 629
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 37/242 (15%)
Query: 120 DNLSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
+ LS++G K+++A L M++ P+ ++ L+ A +K
Sbjct: 50 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
G H+ Y+Y+ILIN +C+ + A+++ +M+ G + T ++L
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P++ + T I GL+ + EAM + + C + T +++
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK G +A+++ + + Q L P V+ YN +I G CK A L +ME G+
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 288
Query: 324 PN 325
PN
Sbjct: 289 PN 290
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ ++ GLC G A L K+ +P V+ +N
Sbjct: 815 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 874
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 875 TIIDGLCKYKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDM 931
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + PDV T + + D K+GK+ EA L + M++R ++P+ TY++L++GF
Sbjct: 932 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 991
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VE+ + + REM G+ + TYN L
Sbjct: 992 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 1051
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPP+ Y T +DGL KNG + +AM VF + K
Sbjct: 1052 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 1111
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDVV YN MI GFC++G ++A+
Sbjct: 1112 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEAD 1170
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 1171 ALFKEMKEDGTLPN 1184
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 181/374 (48%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +LG++L + P+ VT SL+ G C R+ +A L K+ P+++ +N
Sbjct: 238 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 297
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A + F+E + G+ +P+VVT T +++GLC M
Sbjct: 298 AIIDSLCKTKRVNDAFDFFKE-IERKGI--RPNVVTYTALVNGLCNSSRWSDAARLLSDM 354
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+T + + D K+GK+ EA L E M++ ++P+ TY++L++G
Sbjct: 355 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 414
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV SYN LING+CK + VED + L REM G+ ++ TYNTL
Sbjct: 415 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 474
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD Y + GL NG + +A+ +F + +
Sbjct: 475 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 534
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK G+++ AW +F L GL PD+VTY M+ G C +G +
Sbjct: 535 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK-GLKPDIVTYTTMMSGLCTKGLLHEVE 593
Query: 312 GLLLDMEETGLEPN 325
L M++ GL N
Sbjct: 594 ALYTKMKQEGLMKN 607
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 89/354 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++ TF++LI EG+++EA +L+ ++ DP+++T+
Sbjct: 919 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 978
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A +FE MV++ C PDVVT +I G CK +G
Sbjct: 979 SSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 1035
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ + VT N++ L + G + A + + M+ V PN TYNTL+DG
Sbjct: 1036 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 1095
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + + +Y+YNI+I G CK VED L + +G++ D YNT
Sbjct: 1096 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 1155
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ I G C+
Sbjct: 1156 M----------------------------------------------------ISGFCRK 1163
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + A +F M+ G P+ YN +I ++G + + L+ +M G
Sbjct: 1164 GSKEEADALFKE-MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 1216
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 156/360 (43%), Gaps = 43/360 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L + + P++VT+ +++ GLCT+G + E L+ K+ N
Sbjct: 552 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC-- 609
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
TL+ + L E++ + + C +I G+CK + + T +
Sbjct: 610 -TLSDGDITLSAELIKKM-LSCGYAPSLLKDIKSGVCKKALSLLRAFSGK--TSYDYREK 665
Query: 122 LSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
LS++G K+++A L M++ P+ ++ L+ A +K G
Sbjct: 666 LSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG 725
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
H+ Y+Y+ILIN +C+ + A+++ +M+ G + T ++L
Sbjct: 726 IPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAV 785
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + P++ + T I GL+ + EAM + + C + T +++GL
Sbjct: 786 ALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGL 845
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK G +A+++ + + Q L P V+ YN +I G CK A L +ME G+ PN
Sbjct: 846 CKRGDTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNV 117
A++LF +MV P +V ++ + K M G+R D+ T N+
Sbjct: 172 AIDLFSDMVKSRPF---PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ + ++ A +L M++ P+ T +L++GF ++ G
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 288
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ D+ +YN +I+ CK + V DA +E+ +GIR + TY L
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + P+ Y+ +D KNG VLEA ++F + I T + LI+GL
Sbjct: 349 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 408
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C R+ A +F LM + G DVV+YN +I+GFCK + + L +M + GL N
Sbjct: 409 CLHDRIDEANQMFD-LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 467
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P++VT+N+LIKG C R+ E +F++++ N +T+N L +A
Sbjct: 1006 CF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 1064
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F+EMV++ GV P+++T ++DGLCK+G ++ M P + T N+M
Sbjct: 1065 QEIFKEMVSD-GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 1121
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V P+ YNT++ GF KG + + +
Sbjct: 1122 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC--RKGSKEEADALFKEMKED 1179
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + E + L +EM S G DA+T + N+ D +
Sbjct: 1180 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLHDGRL 1235
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 1236 DKSFLDML 1243
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 144/350 (41%), Gaps = 60/350 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G L + N VT+N+LI+G G + +A F +++ F P++ T+N
Sbjct: 448 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 507
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L AL +FE+M + D+VT T +I G+CK G + +
Sbjct: 508 ILLGGLCDNGELEKALVIFEDMQKREMDL---DIVTYTTVIRGMCKTGKVEEAWSLFCSL 564
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN----TLMDGFAW 159
+G++PD+VT M L G + E L M Q + N CT + TL
Sbjct: 565 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIK 624
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
C + + +G CK A+SL R + T+Y+
Sbjct: 625 KMLSCGYAPSLLKDIKSGVCK-----KALSLLRAF------SGKTSYD------------ 661
Query: 220 SHVYTTYIDGLYKNGF----VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
Y + L +NG + +A+ +F + + +I + L+ + K+ + +
Sbjct: 662 ------YREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVI 715
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ MQN G+ + TY+I+I+ FC+ Q A +L M + G EPN
Sbjct: 716 SLGEQ-MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPN 764
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+D K+ +A L M++ P+ +N L+ K G R+D+Y
Sbjct: 165 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 224
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++NI+IN +C V A+S+ +ML G D T +L ++G
Sbjct: 225 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL-----------------VNG 267
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ V +A+ + + I N +ID LCK R+ A+D F + + G+ P
Sbjct: 268 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRP 326
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VVTY +++G C + A LL DM + + PN
Sbjct: 327 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 362
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 189/376 (50%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F L +IL P+ TF +LI+GLC EG+I EA LF K+ PNV+T
Sbjct: 93 LNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVT 152
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DG 101
+ TL A N+F EM+ + G+ P++VT ++I GLCK
Sbjct: 153 YGTLINGLCKDRQVTEAFNIFSEMITK-GI--SPNIVTYNSLIHGLCKLCEWKHVTTLMN 209
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D + PDV TLN + D L K+G + EA+ ++++MI R V PN TYN LMDG
Sbjct: 210 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 269
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K C +V SYN LINGYCK ++V+ A+ L EM + + + TYN
Sbjct: 270 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYN 329
Query: 208 TLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL + +V PD Y T D L KN + +AM + AI
Sbjct: 330 TLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGS 389
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
I+ ++DG+C+ G L+ A D+F L + GL P+V TYNIMIHG CK+G +
Sbjct: 390 NWDPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAE 448
Query: 310 ANGLLLDMEETGLEPN 325
A+ L +M + G PN
Sbjct: 449 ASKLFSEMNKNGCSPN 464
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 168/347 (48%), Gaps = 50/347 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ T N LI C R+ A + KL P+V+T+ TL +N +M+ + G
Sbjct: 614 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTL----MNGLCKMITK-G 668
Query: 81 VICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+ PD+ T ++I LC M++ + P+VV + + D L K+G +
Sbjct: 669 I--SPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAI 726
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILIN 176
A+ ++++MI+R V P+ TY LMDG S KGC +V SYNILIN
Sbjct: 727 AHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILIN 786
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ + ++ A+ L +M +G+ AD TYNTL M + P
Sbjct: 787 GYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 846
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D Y +D L KN + EAM + AI I N IDG+C+ G L+ A D+F
Sbjct: 847 DLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLF 906
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + GL PDV TYNIMIHG CK G +AN L M+E + N
Sbjct: 907 SNL-SSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSN 952
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 153/364 (42%), Gaps = 69/364 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
PN+ T+N +I GLC +G + EA++LF ++N C PN T+N + AL +
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485
Query: 70 NLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGFMMDQGM-----------RPDVVTL-- 115
L EEM+ F V DV T T ++ L DG +DQ + RP +
Sbjct: 486 ELLEEMLARGFSV----DVSTTTLLVGMLSDDG--LDQSVKQILCKPSSSSRPSGTQMRS 539
Query: 116 --------------------NVMTDNLSKDGKMEEANC---------LLEVMIQRDVNPN 146
N + D LS +M + LL + +
Sbjct: 540 LPPLFLSSSHNSLHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYST 599
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ +T MD F G DVY+ NILIN +C R + A S+ ++L G + D TY
Sbjct: 600 VLSLSTQMDSF-----GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTY 654
Query: 207 NTLF-----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
TL M + PD Y + I L + + + N K + + + +
Sbjct: 655 GTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 714
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+D LCK G + IA D+ M+++ G+ PDVVTY ++ G C + +A + M G
Sbjct: 715 VDALCKEGMIAIAHDVVDMMIKR-GVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773
Query: 322 LEPN 325
PN
Sbjct: 774 CVPN 777
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 20/238 (8%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-AWWSKGCR 165
G+ PDV TLN++ ++ ++ A +L +++ P+ TY TLM+G +KG
Sbjct: 611 GIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGIS 670
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D+++YN LI+ C + +L EM++ I + ++T+ A+
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
V PD YT +DG + EA+KVF + + CV + + N LI+G C+
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I R+ A + M GL D VTYN +IHG C G+ Q A L +M +G P+
Sbjct: 791 IQRMDKAMGLLEQ-MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 847
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 151/353 (42%), Gaps = 78/353 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------AL 66
TPN VT+N+LI GLC GR+ +A LF ++ P+++T+ TL A+
Sbjct: 321 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 380
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLN 116
L E G PD+ T I+DG+C+ G + D +G++P+V T N
Sbjct: 381 ALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYN 434
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+M L K G + EA+ L M + +PN CTYN + GF ++
Sbjct: 435 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLAR 494
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVS--LCREMLSEGIRADATT--------------- 205
G DV + +L+ G D ++ +V LC+ S R T
Sbjct: 495 GFSVDVSTTTLLV-GMLSDDGLDQSVKQILCKP--SSSSRPSGTQMRSLPPLFLSSSHNS 551
Query: 206 -------YNTLFMAINNV--------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+NTL A+++ PP + +T + + K + + + + +
Sbjct: 552 LHSRSPHFNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFG 611
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ T N LI+ C + RL A+ + L++ G PDVVTY +++G CK
Sbjct: 612 IPPDVYTLNILINSFCHLRRLGYAFSVLAKLLK-LGFQPDVVTYGTLMNGLCK 663
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 36/218 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VT+ +L+ G C + EA ++F + C PNV ++N L A+ L
Sbjct: 741 PDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGL 800
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
E+M + G+I D VT +I GLC G M+ G PD+VT ++ D
Sbjct: 801 LEQMSLQ-GLIA--DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 857
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K+ + EA LL+ + +++ + YN +DG SKG + D
Sbjct: 858 LCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPD 917
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
V +YNI+I+G CK +++A L R+M I +++T+
Sbjct: 918 VRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 33/230 (14%)
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNI 173
++EA M+ + P+T +N L+ A S G DVY+ I
Sbjct: 26 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NN 215
+IN C V+ A S ++L G + DATT+ TL +
Sbjct: 86 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y T I+GL K+ V EA +FS + I T N LI GLCK+ K
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M + + PDV T N ++ CKEG +A+ ++ M G+EPN
Sbjct: 206 TLMNE-MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN 254
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M +A G LL ++ + + VT+N+LI GLC GR+ A LF ++ P+++T
Sbjct: 794 MDKAMG---LLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 850
Query: 61 FNTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----- 103
+ L A+V L E G D++ IDG+C+ G +
Sbjct: 851 YRILLDYLCKNHHLAEAMVLLKAIE------GSNLDADILVYNIAIDGMCRAGELEAARD 904
Query: 104 -----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
+G++PDV T N+M L K G ++EAN L M + D+ N+ +
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTS 955
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 192/372 (51%), Gaps = 51/372 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++ T+ +++ GLC G I A L KK+ + NV+ +N
Sbjct: 201 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYN 260
Query: 63 TLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMD 105
T+ + L ++ M + F + KPDV T ++I LC G M++
Sbjct: 261 TI-IDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE 319
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+ + P+VVT N + D +K+GK+ EA L + MIQR ++PN TYN+L++GF
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379
Query: 161 ---------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
SK C DV +YN LI G+CK + VE+ + L REM G+ + TYNTL
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + VPPD Y+ +DGL K G + +A+ VF + K
Sbjct: 440 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 499
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T N +I+G+CK G+++ WD+F L G+ P+V+ Y MI GFC++G ++A+ L
Sbjct: 500 NIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVIIYTTMISGFCRKGLKEEADAL 558
Query: 314 LLDMEETGLEPN 325
+M+E G P+
Sbjct: 559 FREMKEDGTLPD 570
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 163/376 (43%), Gaps = 88/376 (23%)
Query: 35 TEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE------EMVNEFGVICKPD 86
+E ++ +A LF ++ P++I F+ L A+ +N F+ E + G+ +
Sbjct: 58 SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHN 115
Query: 87 VVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
T + +++ C+ G MM G PD+VTL+ + + ++ EA L++
Sbjct: 116 HYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 175
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS------------ 170
M++ P+T T+NTL+ G +K GC+ D+++
Sbjct: 176 QMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 235
Query: 171 -----------------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
YN +I+G CK ++++DA L +M ++GI+ D TYN
Sbjct: 236 DIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 295
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M + P+ + + ID K G ++EA K+F +
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
I T N LI+G C RL A IF +++ L PDVVTYN +I GFCK + ++
Sbjct: 356 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLIKGFCKAKRVEE 414
Query: 310 ANGLLLDMEETGLEPN 325
L +M + GL N
Sbjct: 415 GMELFREMSQRGLVGN 430
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 124/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFNSLI EG+++EA +LF ++ DPN++T+
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 364
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-------- 102
N+L + +E F ++ C PDVVT +I G CK +G
Sbjct: 365 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQ 424
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PD++T +++ D L K GK+E+
Sbjct: 425 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEK 484
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNILIN 176
A + E + + + PN TYN +++G W KG + +V Y +I+
Sbjct: 485 ALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMIS 544
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G+C+ E+A +L REM +G D+ YNTL A
Sbjct: 545 GFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRA 580
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 40/243 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT+N+LIKG C R+ E LF++++ N +T+NTL +A +
Sbjct: 394 PDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 453
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F++MV++ GV PD++T + ++DGLCK G ++ M P++ T N+M +
Sbjct: 454 FKKMVSD-GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEG 510
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ K GK+E+ L + + V PN Y T++ GF G D
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPD 570
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
YN LI +D + + L +EM S G DA+T + + N+ D + +Y+
Sbjct: 571 SGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI----NMLHDGRLEKSYL 626
Query: 228 DGL 230
+ L
Sbjct: 627 EML 629
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 194/374 (51%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ ++ GLC G A L K+ +P V+ +
Sbjct: 201 KASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYT 260
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 261 TIIDGLCKNKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + PDV T + + D K+GK+ EA L + M++R ++P+ TY++L++GF
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV SY+ LI G+CK + V++ + L REM G+ + TY TL
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPP+ Y T +DGL KNG + +AM VF + K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDVV YN MI GFC++G ++A+
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 557 ALFKEMKEDGTLPN 570
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 36/225 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT++SLI G C R+ EA ++F+ + C P+V++++TL + L
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM ++ G++ + VT T +I GL + G M+ G+ P+++T N + D
Sbjct: 419 FREM-SQRGLV--GNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHD 167
L K+GK+E+A + E + + + P TYN +++G W KG + D
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
V +YN +I+G+C+ + E+A +L +EM +G ++ YNTL A
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P++V++++LIKG C R+ E LF++++ N +T+ TL +A
Sbjct: 392 CF-PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMA 450
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F+EMV++ GV P+++T ++DGLCK+G ++ M P + T N+M
Sbjct: 451 QEIFKEMVSD-GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V P+ YNT++ GF KG + + +
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC--RKGSKEEADALFKEMKED 565
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + E + L +EM S G DA+T + N+ D +
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLHDGRL 621
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 622 DKSFLDML 629
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 37/242 (15%)
Query: 120 DNLSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
+ LS++G K+++A L M++ P+ ++ L+ A +K
Sbjct: 50 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
G H+ Y+Y+ILIN +C+ + A+++ +M+ G + T ++L
Sbjct: 110 LGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P++ + T I GL+ + EA+ + + C + T +++
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVN 229
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK G +A+ + + + Q L P V+ Y +I G CK A L +ME G+
Sbjct: 230 GLCKRGDTDLAFILLNKMEQGK-LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIR 288
Query: 324 PN 325
PN
Sbjct: 289 PN 290
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G+ L + + P++V +N++I G C +G EA LFK++ PN +
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCY 574
Query: 62 NTLALVALN 70
NTL L
Sbjct: 575 NTLIRARLR 583
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 194/374 (51%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R+++ P++VT+ ++I GLC G A L K+ + +V+ ++
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ G+ +PDV T +++I LC G M
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNK-GI--RPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D +K+GK+ EA L + MIQR ++PN TYN+L++GF
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LING+CK + V D + L R+M G+ + TY TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V P+ Y T +DGL KNG + +AM VF + K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N + +G+CK G+++ WD+F L G+ PDV+ YN MI GFCK+G ++A
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIAYNTMISGFCKKGLKEEAY 540
Query: 312 GLLLDMEETGLEPN 325
L + M+E G P+
Sbjct: 541 TLFIKMKEDGPLPD 554
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L PN+VTFNSLI EG+++EA +LF ++ DPN++T+
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-------- 102
N+L + +E F ++ C PDVVT +I+G CK DG
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ P+++T N + D L K+GK+E+
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNILIN 176
A + E + + + P+ TYN + +G W KG + DV +YN +I+
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G+CK E+A +L +M +G D+ TYNTL A
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 75/267 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ PN+VT+NSLI G C R+ EA ++F + C P+V+T+NTL
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391
Query: 65 ------------------ALV---------------------ALNLFEEMVNEFGVICKP 85
LV A +F++MV++ GV P
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD-GV--HP 448
Query: 86 DVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+++T ++DGLCK+G ++ M PD+ T N+M++ + K GK+E+ L
Sbjct: 449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------------YNILINGYC 179
+ + V P+ YNT++ GF KG + + Y+ YN LI +
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFC--KKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTY 206
+D + + L +EM S DA+TY
Sbjct: 567 RDGDKAASAELIKEMRSCRFAGDASTY 593
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 146/377 (38%), Gaps = 118/377 (31%)
Query: 65 ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD---------GFMMD-QGMRP 110
AL+ L L +E V+ FG + K P +V + ++ + K G M+ G+
Sbjct: 40 ALLHLKL-DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSH 98
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
++ T N+M + L + ++ A +L M++ P+ T N+L++GF +
Sbjct: 99 NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 162 ----------------------------------------KGCRHDVYSYNILINGYCKD 181
KGC+ D+ +Y +ING CK
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
Query: 182 -----------------------------------RNVEDAVSLCREMLSEGIRADATTY 206
R+V+DA++L EM ++GIR D TY
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
++L M + P+ + + ID K G ++EA K+F +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
I T N LI+G C RL A IF +++ L PDVVTYN +I+GFCK +
Sbjct: 339 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVV 397
Query: 309 KANGLLLDMEETGLEPN 325
L DM GL N
Sbjct: 398 DGMELFRDMSRRGLVGN 414
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 55/368 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
L+ R++ P++VT+ ++ GLC G A L K+ +P V+ +NT+
Sbjct: 2 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
ALNLF+EM + G+ +P+VVT +++I LC G M+++ +
Sbjct: 62 CKYKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 118
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------- 160
PDV T + + D K+GK+ EA L + M++R ++P+ TY++L++GF
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
SK C DV +YN LI G+CK + VE+ + + REM G+ + TYN L
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + VPP+ Y T +DGL KNG + +AM VF + K TI T
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 298
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I+G+CK G+++ WD+F L G+ PDVV YN MI GFC++G ++A+ L +M
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEADALFKEM 357
Query: 318 EETGLEPN 325
+E G PN
Sbjct: 358 KEDGTLPN 365
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 89/354 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++ TF++LI EG+++EA +L+ ++ DP+++T+
Sbjct: 100 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 159
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A +FE MV++ C PDVVT +I G CK +G
Sbjct: 160 SSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 216
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ + VT N++ L + G + A + + M+ V PN TYNTL+DG
Sbjct: 217 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 276
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + + +Y+YNI+I G CK VED L + +G++ D YNT
Sbjct: 277 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 336
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ I G C+
Sbjct: 337 M----------------------------------------------------ISGFCRK 344
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + A +F M+ G P+ YN +I ++G + + L+ +M G
Sbjct: 345 GSKEEADALFKE-MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 397
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P++VT+N+LIKG C R+ E +F++++ N +T+N L +A
Sbjct: 187 CF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 245
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F+EMV++ GV P+++T ++DGLCK+G ++ M P + T N+M
Sbjct: 246 QEIFKEMVSD-GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 302
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V P+ YNT++ GF KG + + +
Sbjct: 303 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC--RKGSKEEADALFKEMKED 360
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + E + L +EM S G DA+T + N+ D +
Sbjct: 361 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLHDGRL 416
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 417 DKSFLDML 424
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 187/375 (49%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F PN+VT+ +LI GLC G A RL + + C PNV+ F
Sbjct: 154 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVF 213
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGF 102
+TL A N+F EM+ + G+ P++VT ++I GLCK
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITK-GI--SPNIVTYNSLIHGLCKLCEWKHVTTLMNE 270
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D + PDV TLN + D L K+G + EA+ ++++MI R V PN TYN LMDG
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE 330
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K C +V SYN LINGYCK ++V+ A+ L EM + + + TYNT
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + +V PD Y T D L KN + +AM + AI
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I+ ++DG+C+ G L+ A D+F L + GL P+V TYNIMIHG CK+G +A
Sbjct: 451 WDPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEA 509
Query: 311 NGLLLDMEETGLEPN 325
+ L +M + G PN
Sbjct: 510 SKLFSEMNKNGCSPN 524
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 49/213 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------AL 66
TPN VT+N+LI GLC GR+ +A LF ++ P+++T+ TL A+
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLN 116
L E G PD+ T I+DG+C+ G + D +G++P+V T N
Sbjct: 441 ALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYN 494
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+M L K G + EA+ L M + +PN CTYN + GF ++ R
Sbjct: 495 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALR----------- 543
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ L EML+ G D +T L
Sbjct: 544 ----------TIELLEEMLARGFSVDVSTTTLL 566
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNI 173
++EA M+ + P+T +N L+ A S G DVY+ I
Sbjct: 51 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NN 215
+IN C V+ A S ++L G + DATT+ TL +
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y T I+GL K G A+++ ++ C + + LID LCK ++ A+
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IF ++ G++P++VTYN +IHG CK + + L+ +M ++ + P+
Sbjct: 231 NIFSEMITK-GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPD 279
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/375 (34%), Positives = 187/375 (49%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F PN+VT+ +LI GLC G A RL + + C PNV+ F
Sbjct: 154 GKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVF 213
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGF 102
+TL A N+F EM+ + G+ P++VT ++I GLCK
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITK-GI--SPNIVTYNSLIHGLCKLCEWKHVTTLMNE 270
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D + PDV TLN + D L K+G + EA+ ++++MI R V PN TYN LMDG
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE 330
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K C +V SYN LINGYCK ++V+ A+ L EM + + + TYNT
Sbjct: 331 VDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + +V PD Y T D L KN + +AM + AI
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I+ ++DG+C+ G L+ A D+F L + GL P+V TYNIMIHG CK+G +A
Sbjct: 451 WDPDIQIYTTILDGMCRAGELEDARDLFSNL-SSKGLQPNVWTYNIMIHGLCKQGLLAEA 509
Query: 311 NGLLLDMEETGLEPN 325
+ L +M + G PN
Sbjct: 510 SKLFSEMNKNGCSPN 524
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 49/213 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------AL 66
TPN VT+N+LI GLC GR+ +A LF ++ P+++T+ TL A+
Sbjct: 381 LTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAM 440
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLN 116
L E G PD+ T I+DG+C+ G + D +G++P+V T N
Sbjct: 441 ALLKAIE------GSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYN 494
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+M L K G + EA+ L M + +PN CTYN + GF ++ R
Sbjct: 495 IMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALR----------- 543
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ L EML+ G D +T L
Sbjct: 544 ----------TIELLEEMLARGFSVDVSTTTLL 566
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNI 173
++EA M+ + P+T +N L+ A S G DVY+ I
Sbjct: 51 LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NN 215
+IN C V+ A S ++L G + DATT+ TL +
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y T I+GL K G A+++ ++ C + + LID LCK ++ A+
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IF ++ G++P++VTYN +IHG CK + + L+ +M ++ + P+
Sbjct: 231 NIFSEMITK-GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPD 279
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G I A L K+ + NV+ ++
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYS 264
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----M 103
T+ ALNLF EM N+ GV +P+V+T +++I LC D M
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEMENK-GV--RPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LING+CK + +++ V L REM G+ + TY TL
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V P+ Y T +DGL KNG + +AM VF + K
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDV+ YN MI GFC++G ++A+
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIIYNTMISGFCRKGLKEEAD 560
Query: 312 GLLLDMEETGLEPN 325
L M E G P+
Sbjct: 561 ALFRKMREDGPLPD 574
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 161/367 (43%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L G ++ S P++ FN L+ + + L +K+ N+ T+N L
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+AL L +M+ + G +P +VT +++++G C M++ G RP
Sbjct: 132 RRSQISLALALLGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T + L K EA L++ M+QR PN TY +++G
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ +V Y+ +I+ CK R+ +DA++L EM ++G+R + TY++L
Sbjct: 249 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 308
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ + ID K G ++EA K++ + I T
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ LI+G C RL A +F LM + P+VVTYN +I+GFCK + + L +M
Sbjct: 369 SSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 319 ETGLEPN 325
+ GL N
Sbjct: 428 QRGLVGN 434
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 71/271 (26%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S LL ++ PN+VTFN+LI EG+++EA +L+ ++ DP++ T++
Sbjct: 310 RWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------------- 99
+L A ++FE M+++ C P+VVT +I+G CK
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 100 ----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
GF M+ G+ P+++T N + D L K+GK+
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNIL 174
E+A + E + + + P TYN +++G W KG + DV YN +
Sbjct: 487 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTM 546
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATT 205
I+G+C+ E+A +L R+M +G D+ T
Sbjct: 547 ISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 19/205 (9%)
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+Q NP + + G +W + Y ++ ++DA+ L M+
Sbjct: 21 LQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSR 80
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+N L AI + + + Y I+ + + A+
Sbjct: 81 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL 140
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + +I T + L++G C R+ A + +++ G PD +T+ +IHG
Sbjct: 141 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPDTITFTTLIHG 199
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+ +A L+ M + G +PN
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPN 224
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ V+ + S P + T+N +I+G+C G++ + LF L++ P+VI +
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543
Query: 62 NTL 64
NT+
Sbjct: 544 NTM 546
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 189/375 (50%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S VL+ R++ F P+ VT+ ++ LC G A LF+K+ +V+ +
Sbjct: 218 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 277
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + AL+LF EM E I K DVVT +++I GLC DG
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEM--EMKGI-KADVVTYSSLIGGLCNDGKWDDGAKMLRE 334
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + + PDVVT + + D K+GK+ EA L MI R + P+T TYN+L+DGF
Sbjct: 335 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 394
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC D+ +Y+ILIN YCK + V+D + L RE+ S+G+ + TYNT
Sbjct: 395 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 454
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP Y +DGL NG + +A+++F + +
Sbjct: 455 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 514
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I N +I G+C ++ AW +F L + G+ PDVVTYN+MI G CK+G +A
Sbjct: 515 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEA 573
Query: 311 NGLLLDMEETGLEPN 325
+ L M+E G P+
Sbjct: 574 DMLFRKMKEDGCTPD 588
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 89/347 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +L ++ P++VTF++LI EG++LEA L+ ++ P+ IT+
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFMM-----D 105
N+L N E F ++ C+PD+VT + +I+ CK DG +
Sbjct: 383 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 442
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ P+ +T N + + GK+ A L + M+ R V P+ TY L+DG
Sbjct: 443 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 502
Query: 157 ----FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
F K + YNI+I+G C V+DA SL + +G++ D TYN +
Sbjct: 503 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM-- 560
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I GL K G + EA
Sbjct: 561 ---------------IGGLCKKGSLSEA-------------------------------- 573
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
D+ M+ G TPD TYNI+I H +GL+ +E
Sbjct: 574 ----DMLFRKMKEDGCTPDDFTYNILIRA------HLGGSGLISSVE 610
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 98/239 (41%), Gaps = 78/239 (32%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT++ LI C R+ + RLF++++ PN IT+NTL L A L
Sbjct: 412 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 471
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------------------------ 101
F+EMV+ GV P VVT ++DGLC +G
Sbjct: 472 FQEMVSR-GV--PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 528
Query: 102 ---------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+ D+G++PDVVT NVM L K G + EA+ L M +
Sbjct: 529 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE------ 582
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
GC D ++YNILI + + +V L EM G AD++T
Sbjct: 583 ---------------DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSST 626
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 54/304 (17%)
Query: 68 ALNLFEEMVN--------EFGVICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVM 118
A++LFE M+ +F +C T +++ G CK M G+ D+ T+ +M
Sbjct: 83 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEHDMYTMTIM 140
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
+ + K+ A +L + P+T T++TL++GF +
Sbjct: 141 INCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 200
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
R D+ + + LING C V +A+ L M+ G + D TY +
Sbjct: 201 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 260
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M N+ Y+ ID L K+G +A+ +F+ + + T + LI GLC
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 320
Query: 267 KIGRLKIAWD-----IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G+ WD + M+ +N + PDVVT++ +I F KEG+ +A L +M G
Sbjct: 321 NDGK----WDDGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 374
Query: 322 LEPN 325
+ P+
Sbjct: 375 IAPD 378
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 33/233 (14%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
D K+ +A L E MIQ P +N L A + G HD+Y+
Sbjct: 77 DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 136
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
I+IN YC+ + + A S+ G D T++TL M
Sbjct: 137 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 196
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD +T I+GL G V EA+ + + + T +++ LCK G
Sbjct: 197 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 256
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A D+F M+ + VV Y+I+I CK+G A L +ME G++ +
Sbjct: 257 LALDLFRK-MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S VL+ R++ F P+ VT+ ++ LC G A LF+K+ +V+ +
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + AL+LF EM + G+ K DVVT +++I GLC DG
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMK-GI--KADVVTYSSLIGGLCNDGKWDDGAKMLRE 305
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + + PDVVT + + D K+GK+ EA L MI R + P+T TYN+L+DGF
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC D+ +Y+ILIN YCK + V+D + L RE+ S+G+ + TYNT
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP Y +DGL NG + +A+++F + +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I N +I G+C ++ AW +F L + G+ PDVVTYN+MI G CK+G +A
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Query: 311 NGLLLDMEETGLEPN 325
+ L M+E G P+
Sbjct: 545 DMLFRKMKEDGCTPD 559
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 89/347 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +L ++ P++VTF++LI EG++LEA L+ ++ P+ IT+
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFMM-----D 105
N+L N E F ++ C+PD+VT + +I+ CK DG +
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 413
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ P+ +T N + + GK+ A L + M+ R V P+ TY L+DG
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473
Query: 157 ----FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
F K + YNI+I+G C V+DA SL + +G++ D TYN +
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM-- 531
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I GL K G + EA
Sbjct: 532 ---------------IGGLCKKGSLSEA-------------------------------- 544
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
D+ M+ G TPD TYNI+I H +GL+ +E
Sbjct: 545 ----DMLFRKMKEDGCTPDDFTYNILIRA------HLGGSGLISSVE 581
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 54/304 (17%)
Query: 68 ALNLFEEMVN--------EFGVICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVM 118
A++LFE M+ +F +C T +++ G CK M G+ D+ T+ +M
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEHDMYTMTIM 111
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
+ + K+ A +L + P+T T++TL++GF +
Sbjct: 112 INCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 171
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
R D+ + + LING C V +A+ L M+ G + D TY +
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M N+ Y+ ID L K+G +A+ +F+ + + T + LI GLC
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 267 KIGRLKIAWD-----IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G+ WD + M+ +N + PDVVT++ +I F KEG+ +A L +M G
Sbjct: 292 NDGK----WDDGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 322 LEPN 325
+ P+
Sbjct: 346 IAPD 349
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 98/239 (41%), Gaps = 78/239 (32%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT++ LI C R+ + RLF++++ PN IT+NTL L A L
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------------------------ 101
F+EMV+ GV P VVT ++DGLC +G
Sbjct: 443 FQEMVSR-GV--PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 102 ---------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+ D+G++PDVVT NVM L K G + EA+ L M +
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE------ 553
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
GC D ++YNILI + + +V L EM G AD++T
Sbjct: 554 ---------------DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSST 597
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 33/233 (14%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
D K+ +A L E MIQ P +N L A + G HD+Y+
Sbjct: 48 DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
I+IN YC+ + + A S+ G D T++TL M
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD +T I+GL G V EA+ + + + T +++ LCK G
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A D+F M+ + VV Y+I+I CK+G A L +ME G++ +
Sbjct: 228 LALDLFRK-MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/407 (31%), Positives = 198/407 (48%), Gaps = 84/407 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L+ R++ + PN+VT N+LI GLC +GR+ EA L ++ + C+ N IT+
Sbjct: 153 GRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212
Query: 62 NTL---------ALVALNLFEEM--------VNEFGVIC--------------------- 83
+ +AL+LF +M V ++ ++
Sbjct: 213 GPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEM 272
Query: 84 ---KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
K DVV ++II GLC DG M+ + + P+VVT + + D K+GK+ E
Sbjct: 273 KGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLE 332
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L M+ R + P+T TY++L+DGF SKGC ++ +Y+ILIN
Sbjct: 333 AKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILIN 392
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
YCK + V++ + L E+ S+G+ AD TYNTL M VPP
Sbjct: 393 SYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPP 452
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
Y +DGL NG + +A+++F + + +L I N +I G+C ++ AW +F
Sbjct: 453 SVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLF 512
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L G+ PDV+TYN+MI G CK+G +A+ L M+E G P+
Sbjct: 513 CSL-SVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPS 558
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 150/355 (42%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
NM T N +I C + ++L A + + F +PN ITF+TL A+ L
Sbjct: 103 NMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALV 162
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ MV + +P+VVT +I+GLC G M+ G + +T + + +
Sbjct: 163 DRMVE---MKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRM 219
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G A L M +R + + Y+ ++D KG + DV
Sbjct: 220 CKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADV 279
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+Y+ +I G C D +D + REM+ I + T++ L
Sbjct: 280 VAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNE 339
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD+ Y++ IDG K + EA ++ + + C I T + LI+ CK R
Sbjct: 340 MVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKR 399
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F + + GL D VTYN ++ GFC+ G+ A L +M G+ P+
Sbjct: 400 VDNGMRLFCEI-SSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPS 453
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 152/377 (40%), Gaps = 89/377 (23%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
SC + V++ ++ + ++ EA LF+ + P++I F+ L
Sbjct: 28 SCISEAKVSYKERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKL------------ 75
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD-QGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
F + + +++ G CK+ MD G+ ++ T+N+M + + K+ A ++
Sbjct: 76 --FSAVARRKEY---DLVLGFCKE---MDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVV 127
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------------------------- 162
++ PNT T++TL++GF +
Sbjct: 128 GRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLK 187
Query: 163 ----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC + +Y ++N CK N A+ L R+M I+A Y
Sbjct: 188 GRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQY 247
Query: 207 N----------------TLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ +LF M + + D Y++ I GL +G + K+ +
Sbjct: 248 SIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIG 307
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ + T + LID K G+L A ++++ ++ G+ PD +TY+ +I GFCKE +
Sbjct: 308 RNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVAR-GIAPDTITYSSLIDGFCKENRLG 366
Query: 309 KANGLLLDMEETGLEPN 325
+AN +L M G EPN
Sbjct: 367 EANQMLDLMVSKGCEPN 383
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G L I + VT+N+L++G C G++ A LF+++ P+V+T+
Sbjct: 399 RVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYG 458
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L AL +FE+M ++ + II G+C + D
Sbjct: 459 ILLDGLCDNGELQKALEIFEKMQKSRMIL---GIGIYNIIIHGMCNASKVDDAWSLFCSL 515
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G++PDV+T NVM L K G + EA+ L M + P+ CT
Sbjct: 516 SVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCT-------------- 561
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
YNILI + V +V L EM G ADA+T + + ++ D +
Sbjct: 562 -------YNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLS----DGRLD 610
Query: 224 TTYIDGL 230
T++D L
Sbjct: 611 KTFLDML 617
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 188/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G A L K+ + +V+ FN
Sbjct: 167 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 226
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 227 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 283
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 284 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 343
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 344 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 403
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 404 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 463
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 464 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSL-SLKGVKPNVVTYNTMISGLCSKRLLQEAY 522
Query: 312 GLLLDMEETGLEPN 325
LL M+E G PN
Sbjct: 523 ALLKKMKEDGPLPN 536
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L G ++ S P++V FN L+ + + L +K+ + T+N L
Sbjct: 34 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFC 93
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRP 110
+AL L +M+ + G +P +VT +++++G C D M++ G RP
Sbjct: 94 RRSQISLALALLGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T + L K EA L++ M+QR PN TY +++G
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ DV +N +I+ CK R+V+DA++L +EM ++GIR + TY++L
Sbjct: 211 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 270
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ + ID K G +EA K++ + I T
Sbjct: 271 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 330
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L++G C RL A +F ++ PDVVTYN +I GFCK + + L +M
Sbjct: 331 NSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMS 389
Query: 319 ETGL 322
GL
Sbjct: 390 HRGL 393
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L+ + DP++ T+
Sbjct: 271 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 330
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PDVVT +I G CK DG
Sbjct: 331 NSLVNGFCMHDRLDKAKQMFEFMVSK---DCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 387
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 388 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 447
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 448 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 507
Query: 209 LFMAI 213
+ +
Sbjct: 508 MISGL 512
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++VT+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 358 CF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 416
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 417 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 473
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+++ L + + V PN TYNT++ G SK + Y+
Sbjct: 474 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRLLQEAYALLKKMKED 531
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 532 GPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRL 587
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 588 DKSFLDML 595
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G+ L + + PN+VT+N++I GLC++ + EA L KK+ PN T+
Sbjct: 481 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 540
Query: 62 NTL 64
NTL
Sbjct: 541 NTL 543
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 18/167 (10%)
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+W + Y ++ D ++DA+ L M+ +N L AI +
Sbjct: 3 YWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKK 62
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + G ++ +++ V + T N LI+ C+ ++ +A +
Sbjct: 63 --------FDVVISLGEKMQRLEI---------VHGLYTYNILINCFCRRSQISLALALL 105
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M+ G P +VT + +++G+C + A L+ M E G P+
Sbjct: 106 GKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPD 151
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 188/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G A L K+ + +V+ FN
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK-GVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 312 GLLLDMEETGLEPN 325
LL M+E G PN
Sbjct: 561 ALLKKMKEDGPLPN 574
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L G ++ S P++V FN L+ + + L +K+ + T+N L
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFC 131
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRP 110
+AL L +M+ + G +P +VT +++++G C D M++ G RP
Sbjct: 132 RRSQISLALALLGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T + L K EA L++ M+QR PN TY +++G
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ DV +N +I+ CK R+V+DA++L +EM ++GIR + TY++L
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 308
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ + ID K G +EA K++ + I T
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L++G C RL A +F ++ PDVVTYN +I GFCK + + L +M
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMS 427
Query: 319 ETGL 322
GL
Sbjct: 428 HRGL 431
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L+ + DP++ T+
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PDVVT +I G CK DG
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSK---DCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 209 LFMAI 213
+ +
Sbjct: 546 MISGL 550
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++VT+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 396 CF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 455 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+++ L + + V PN TYNT++ G SK + Y+
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRLLQEAYALLKKMKED 569
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 570 GPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRL 625
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 626 DKSFLDML 633
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G+ L + + PN+VT+N++I GLC++ + EA L KK+ PN T+
Sbjct: 519 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578
Query: 62 NTL 64
NTL
Sbjct: 579 NTL 581
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 18/187 (9%)
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+Q NP + + G +W + Y ++ D ++DA+ L M+
Sbjct: 21 LQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSR 80
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+N L AI + D + G ++ +++ V + T
Sbjct: 81 PLPSIVEFNKLLSAIAKMKK--------FDVVISLGEKMQRLEI---------VHGLYTY 123
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+ C+ ++ +A + +M+ G P +VT + +++G+C + A L+ M
Sbjct: 124 NILINCFCRRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 319 ETGLEPN 325
E G P+
Sbjct: 183 EMGYRPD 189
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 190/402 (47%), Gaps = 90/402 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+LG++ P+ +TFN+LI G C EG I EA LF ++ P+VI+++T+
Sbjct: 149 VLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLC 208
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+AL L +M E G CKP++V T IID LCKD M+D+G+ P
Sbjct: 209 KSGNTSMALQLLRKM-EEKG--CKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPP 265
Query: 111 DVVT-----------------------------------LNVMTDNLSKDGKMEEANCLL 135
DVVT ++ D L K+G + EA C+
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325
Query: 136 EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKD 181
E M ++ PN TYN LMDG+ KGC V+SYNILINGYCK
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVY 223
R +++A SL EM + + D TY+TL + + + PD Y
Sbjct: 386 RRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTY 445
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+T +DGL K+G + EA+K+ ++ K I N LI+G+ G+L++A ++F L
Sbjct: 446 STLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFA 505
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ P + TY IMI G KEG +A L ME+ G PN
Sbjct: 506 D-GIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPN 546
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 155/345 (44%), Gaps = 52/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L P++V F + + + + L ++++F NV + N L
Sbjct: 82 RMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNIL-------- 133
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+C+ +++ + G M G++PD +T N + + +G+++EA
Sbjct: 134 ------INCLCR-----LNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAV 182
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
L M++R P+ +Y+T+++G KGC+ ++ +Y +I+
Sbjct: 183 GLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSL 242
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
CKD V DA+ L EM+ GI D TY+T+ M NV P++
Sbjct: 243 CKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+T +DGL K G V EA VF A+ T N L+DG C ++ A +
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD- 361
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M + G P V +YNI+I+G+CK + +A LL++M E L P+
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPD 406
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 98/211 (46%), Gaps = 43/211 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
TP+ VT+++L++GLC GR EA LFK++ P+++T++TL AL
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEAL 462
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMT 119
L + M +PD+V +I+G+ K+ F + G++P + T +M
Sbjct: 463 KLLKSMQES---KIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMI 519
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L K+G +EA L M PN+C+Y N++I G+
Sbjct: 520 KGLLKEGLSDEAYELFRKMEDDGFLPNSCSY---------------------NVIIQGFL 558
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
++++ A+ L EM+ + AD++T+ L
Sbjct: 559 QNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L + S P+++T+++L+ GLC G + EA +L K + +P+++
Sbjct: 420 VGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVL 479
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N L VA LF ++ F +P + T T +I GL K+G
Sbjct: 480 YNILIEGMFIAGKLEVAKELFSKL---FADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M D G P+ + NV+ ++ A L++ M+ + + ++ T+ L+D
Sbjct: 537 KMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 189/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G I A L K+ + +V+ FN
Sbjct: 129 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 188
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 189 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 245
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 246 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 305
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C D+ +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 306 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 365
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 366 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 425
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 426 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK-GVKPNVVTYNTMISGLCSKRLLQEAY 484
Query: 312 GLLLDMEETGLEPN 325
LL M+E G P+
Sbjct: 485 ALLKKMKEDGPLPD 498
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 140/317 (44%), Gaps = 51/317 (16%)
Query: 56 PNVITFNTL--ALVALNLFEEMVNE--FGVICK----PDVVTCTNIIDGLC-----KDGF 102
P++ FN L A+ + F+ +++ G + K P +VT +++++G C D
Sbjct: 40 PSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 99
Query: 103 -----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M++ G RPD +T + L K EA L++ M+QR PN TY +++G
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159
Query: 158 --------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+ DV +N +I+ CK R+V+DA++L +EM ++GIR +
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 219
Query: 204 TTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
TY++L M + P+ + ID K G +EA K+
Sbjct: 220 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDD 279
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ I T N LI+G C RL A +F M + PD+ TYN +I GFCK
Sbjct: 280 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFPDLDTYNTLIKGFCKSK 338
Query: 306 QHQKANGLLLDMEETGL 322
+ + L +M GL
Sbjct: 339 RVEDGTELFREMSHRGL 355
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 121/284 (42%), Gaps = 54/284 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L + DP++ T+
Sbjct: 233 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 292
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PD+ T +I G CK DG
Sbjct: 293 NSLINGFCMHDRLDKAKQMFEFMVSK---DCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 349
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 350 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 409
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 410 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 469
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+ M + PDS Y T I ++G
Sbjct: 470 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 513
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 41/246 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++ T+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 320 CF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 378
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 379 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 435
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GC 164
+ + K GK+++ L + + V PN TYNT++ G +A K G
Sbjct: 436 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D +YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 496 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRLDK 551
Query: 225 TYIDGL 230
+++D L
Sbjct: 552 SFLDML 557
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 189/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G I A L K+ + +V+ FN
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 246
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C D+ +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSL-SLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 312 GLLLDMEETGLEPN 325
LL M+E G P+
Sbjct: 486 ALLKKMKEDGPLPD 499
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 55/353 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++ FN L+ + + L +K+ N+ T+N L +AL L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDN 121
+M+ + G +P +VT +++++G C D M++ G RPD +T +
Sbjct: 68 LGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K EA L++ M+QR PN TY +++G + D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +N +I+ CK R+V+DA++L +EM ++GIR + TY++L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + P+ + ID K G +EA K+ + I T N LI+G C
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
RL A +F ++ PD+ TYN +I GFCK + + L +M GL
Sbjct: 305 RLDKAKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 121/284 (42%), Gaps = 54/284 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L + DP++ T+
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PD+ T +I G CK DG
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSK---DCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 350
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 410
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 411 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 470
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+ M + PDS Y T I ++G
Sbjct: 471 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 41/246 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++ T+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 321 CF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 380 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 436
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GC 164
+ + K GK+++ L + + V PN TYNT++ G +A K G
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D +YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRLDK 552
Query: 225 TYIDGL 230
+++D L
Sbjct: 553 SFLDML 558
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 196/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++ T+ +++ GLC G I A L KK+ + +V+ +
Sbjct: 184 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 243
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL ALNLF EM N+ G+ +P+VVT ++I LC G M
Sbjct: 244 TIIDALCNYKNVNDALNLFTEMDNK-GI--RPNVVTYNSLIRCLCNYGRWSDASRLLSDM 300
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 301 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 360
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LI G+CK + VE+ + L REM G+ + TYNTL
Sbjct: 361 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 420
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL K G + +A+ VF + K
Sbjct: 421 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 480
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ WD+F L G+ P+V+ Y MI GFC++G ++A+
Sbjct: 481 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEAD 539
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 540 ALFREMKEDGTLPN 553
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 57/343 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 288 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 347
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A ++FE M+++ C P+VVT +I G CK +G
Sbjct: 348 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G+ + VT N + L + G + A + + M+ V P+ TY+ L+DG + K
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSL-CREMLSEGIRADATTYN 207
D+Y+YNI+I G CK VED L C
Sbjct: 465 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS--------------- 509
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+++ V P+ +YTT I G + G EA +F + + T N LI +
Sbjct: 510 ---LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 566
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
G + ++ M++ G D T +++I+ +G+ +K+
Sbjct: 567 DGDKAASAELIKE-MRSCGFVGDASTISMVIN-MLHDGRLEKS 607
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF PN+VT+N+LIKG C R+ E LF++++ N +T+NTL +A
Sbjct: 375 CF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 433
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLCK G ++ M PD+ T N+M
Sbjct: 434 QKIFKKMVSD-GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V PN Y T++ GF KG + + +
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC--RKGLKEEADALFREMKED 548
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + + L +EM S G DA+T + + N+ D +
Sbjct: 549 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI----NMLHDGRL 604
Query: 223 YTTYIDGL 230
+Y++ L
Sbjct: 605 EKSYLEML 612
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 68/275 (24%)
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------GCR----- 165
++ N+ D K+++A L M+Q P+ +N L+ A +K G R
Sbjct: 35 LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 94
Query: 166 --HDVYSYNILI-----------------------------------NGYCKDRNVEDAV 188
+D+YSYNILI NGYC + + +AV
Sbjct: 95 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 154
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
+L +M + + T+NTL M PD Y T ++GL
Sbjct: 155 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 214
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G + A+ + + K + +ID LC + A ++F M N G+ P+
Sbjct: 215 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE-MDNKGIRPN 273
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VVTYN +I C G+ A+ LL DM E + PN
Sbjct: 274 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 308
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 196/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++ T+ +++ GLC G I A L KK+ + +V+ +
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 259
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL ALNLF EM N+ G+ +P+VVT ++I LC G M
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNK-GI--RPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LI G+CK + VE+ + L REM G+ + TYNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL K G + +A+ VF + K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ WD+F L G+ P+V+ Y MI GFC++G ++A+
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEAD 555
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 556 ALFREMKEDGTLPN 569
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 57/343 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A ++FE M+++ C P+VVT +I G CK +G
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G+ + VT N + L + G + A + + M+ V P+ TY+ L+DG + K
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSL-CREMLSEGIRADATTYN 207
D+Y+YNI+I G CK VED L C
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS--------------- 525
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+++ V P+ +YTT I G + G EA +F + + T N LI +
Sbjct: 526 ---LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
G + ++ M++ G D T +++I+ +G+ +K+
Sbjct: 583 DGDKAASAELIKE-MRSCGFVGDASTISMVIN-MLHDGRLEKS 623
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF PN+VT+N+LIKG C R+ E LF++++ N +T+NTL +A
Sbjct: 391 CF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLCK G ++ M PD+ T N+M
Sbjct: 450 QKIFKKMVSD-GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V PN Y T++ GF KG + + +
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC--RKGLKEEADALFREMKED 564
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + + L +EM S G DA+T + + N+ D +
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI----NMLHDGRL 620
Query: 223 YTTYIDGL 230
+Y++ L
Sbjct: 621 EKSYLEML 628
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 68/275 (24%)
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------GCR----- 165
++ N+ D K+++A L M+Q P+ +N L+ A +K G R
Sbjct: 51 LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 110
Query: 166 --HDVYSYNILI-----------------------------------NGYCKDRNVEDAV 188
+D+YSYNILI NGYC + + +AV
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
+L +M + + T+NTL M PD Y T ++GL
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G + A+ + + K + +ID LC + A ++F M N G+ P+
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE-MDNKGIRPN 289
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VVTYN +I C G+ A+ LL DM E + PN
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 324
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 196/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RAS L+ R+++ P++VT+ ++ GLC G I A L KK+ +P V+ +N
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYN 260
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL ALNLF EM N+ G+ +P+VVT ++I LC G M
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNK-GI--RPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LI G+CK + V++ + L REM G+ + TY TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V PD Y+ +DGL NG V A+ VF + K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ WD+F L G+ P+VVTY M+ GFC++G ++A+
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEEAD 556
Query: 312 GLLLDMEETGLEPN 325
L +M+E G P+
Sbjct: 557 ALFREMKEEGPLPD 570
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 71/279 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------- 99
++L A ++FE M+++ C P+VVT +I G CK
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421
Query: 100 -----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
GF M+ G+ PD++T +++ D L +GK
Sbjct: 422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK 481
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNI 173
+E A + E + + + P+ TYN +++G W KG + +V +Y
Sbjct: 482 VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 541
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+++G+C+ E+A +L REM EG D+ TYNTL A
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
I CF PN+VT+N+LIKG C R+ E LF++++ N +T+ TL
Sbjct: 388 ISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
A +F++MV++ GV+ PD++T + ++DGLC +G ++ M PD+ T
Sbjct: 447 CDNAQIVFKQMVSD-GVL--PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N+M + + K GK+E+ L + + V PN TY T+M GF
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK 563
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+G D +YN LI + +D + + L REM S DA+T
Sbjct: 564 EEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAST 608
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 33/257 (12%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G M+ P +V + + ++K K + L E M ++ N TY+ L++ F
Sbjct: 70 GDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRR 129
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+ G D+ + N L+NG+C + DAVSL +M+ G + D+ T+
Sbjct: 130 SQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTF 189
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL M + PD Y ++GL K G + A+ + +
Sbjct: 190 NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ 249
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
K + N +ID LC + A ++F M N G+ P+VVTYN +I C G+
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 309 KANGLLLDMEETGLEPN 325
A+ LL DM E + PN
Sbjct: 309 DASRLLSDMIERKINPN 325
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 188/411 (45%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL P+ TF +LI+GLC EG+I EA LF K+ PNV+T
Sbjct: 104 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 163
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 164 YGTLINGLCKVGNTSAAIRLLRSM--EQGN-CQPDVVIYTSIIDSLCKDRQVTEAFNLFS 220
Query: 102 FMMDQGMRPD-----------------------------------VVTLNVMTDNLSKDG 126
M+ QG+ PD VV + + D L K+G
Sbjct: 221 QMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEG 280
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
K+ EA+ ++++MIQR V P+ TY TLMDG S KG DV SY
Sbjct: 281 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 340
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
LINGYCK ++ A+ L EM + D TYNTL + +V
Sbjct: 341 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR 400
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y+ +D L KN + EAM + AI I+ N +IDG+C+ G L+ A
Sbjct: 401 GQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAA 460
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L + GL P V TYNIMIHG CK G +AN L ++M+ P+
Sbjct: 461 RDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPD 510
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 169/399 (42%), Gaps = 90/399 (22%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT------------ 60
R+L P++V F L+ + L +++ F PNV T
Sbjct: 46 RLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLN 105
Query: 61 -----FNTLALV---------------------------ALNLFEEMVNEFGVICKPDVV 88
F+ LA + AL+LF++M++E +P+VV
Sbjct: 106 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG---FQPNVV 162
Query: 89 TCTNIIDGLCKDG---------FMMDQGM-RPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T +I+GLCK G M+QG +PDVV + D+L KD ++ EA L M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222
Query: 139 IQRDVNPNTCTYNTLMDGF----AWW----------SKGCRHDVYSYNILINGYCKDRNV 184
+ + ++P+ TY +L+ W + DV ++ +++ CK+ V
Sbjct: 223 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 282
Query: 185 EDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTY 226
+A + M+ G+ D TY TL M PD YTT
Sbjct: 283 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 342
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G K + +AM +F + + + +T N L+ GLC +GRL+ A +FH ++ G
Sbjct: 343 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR-G 401
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+VTY+I++ CK ++A LL +E + L P+
Sbjct: 402 QMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPD 440
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 57/303 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ ++ P++VT+ +L+ G C + + EA ++F + P+VI++
Sbjct: 280 GKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISY 339
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
TL A+ LFEEM + + PD T ++ GLC G + D
Sbjct: 340 TTLINGYCKIHKIDKAMYLFEEMCRKEWI---PDTKTYNTLMHGLCHVGRLQDAIALFHE 396
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
+G PD+VT +++ D+L K+ +EEA LL+ + ++NP+ YN ++DG
Sbjct: 397 MVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGE 456
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG V++YNI+I+G CK R +L+E N
Sbjct: 457 LEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK-----------RGLLNEA--------NK 497
Query: 209 LFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
LFM + N+ PD Y T G +N L A+++ + + T L++ L
Sbjct: 498 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLS 557
Query: 267 KIG 269
G
Sbjct: 558 DDG 560
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+ P+ T+N+L+ GLC GR+ +A LF ++ P+++T++ L +L EE +
Sbjct: 367 WIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAM 426
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
I PD+ IIDG+C+ G + +G+ P V T N+M L
Sbjct: 427 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 486
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K G + EAN L M D +P+ CTYNT+ GF ++ R +L G+ D
Sbjct: 487 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADV 546
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +L EMLS+ D ++ F+ ++ + D Y +I
Sbjct: 547 ST---TTLLVEMLSD----DGLDQSSCFLMLSVLSEDDRRYFIFI 584
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 190/402 (47%), Gaps = 90/402 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+LG++ P TFN+LI GLC EG+I EA LF ++ +PNVI++NT+
Sbjct: 145 ILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLC 204
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGM-- 108
+A+++F++M CKPDVVT IID LCKD M+D+G+
Sbjct: 205 KTGNTSMAVDVFKKMEQNG---CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPP 261
Query: 109 ---------------------------------RPDVVTLNVMTDNLSKDGKMEEANCLL 135
PD VTL ++ D L K+G + EA +
Sbjct: 262 NVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVF 321
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKD 181
E M ++ V PN TYN LMDG+ +GC V+SYNILING+CK
Sbjct: 322 ETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKS 381
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFM----------AIN--------NVPPDSHVY 223
R +++A SL EM + + D TY+TL A+N + P+ Y
Sbjct: 382 RRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTY 441
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ +DG K+G + EA+K+ ++ K I LI+G+ G+L++A ++F L
Sbjct: 442 SILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFA 501
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ P + TY +MI G KEG +A L ME+ G PN
Sbjct: 502 D-GIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 542
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 119/286 (41%), Gaps = 68/286 (23%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ +V +LNV+ + L + ++ A +L M + ++P T+N L++G K
Sbjct: 118 GVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEA 177
Query: 163 ---------------------------------------------GCRHDVYSYNILING 177
GC+ DV +YN +I+
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYN----------------TLF--MAINNVPPD 219
CKDR V DA+ EML GI + TYN LF M +V PD
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ T +DGL K G V EA VF + I T N L+DG C + A +F
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++ G P V +YNI+I+GFCK + +A LL +M L P+
Sbjct: 358 IMIRQ-GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPD 402
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 41/246 (16%)
Query: 2 GRASGGFVLLGRILMSCFT-----PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G G V R++ T PN+ T+N+L+ G C + + EA ++F+ + C P
Sbjct: 307 GLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAP 366
Query: 57 NVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----- 102
V ++N L A +L EM ++ PD VT + ++ GLC+ G
Sbjct: 367 GVHSYNILINGFCKSRRMDEAKSLLAEMYHK---ALNPDTVTYSTLMQGLCQFGRPKEAL 423
Query: 103 -----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M G+ P++VT +++ D K G ++EA LL+ M ++ + PN + L++G
Sbjct: 424 NIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGM 483
Query: 158 --------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
++ G R + +Y ++I G K+ ++A L R+M +G ++
Sbjct: 484 FIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNS 543
Query: 204 TTYNTL 209
+YN +
Sbjct: 544 CSYNVM 549
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 40/226 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
P + ++N LI G C R+ EA L ++ +P+ +T++TL ALN
Sbjct: 365 APGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALN 424
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+F+EM + +G++ P++VT + ++DG CK G M ++ + P++V ++ +
Sbjct: 425 IFKEMCS-YGLL--PNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIE 481
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY----------- 169
+ GK+E A L + + P TY ++ G +G + Y
Sbjct: 482 GMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGL--LKEGLSDEAYDLFRKMEDDGF 539
Query: 170 -----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SYN++I G+ ++++ A+ L EM+ + A+ +T+ L
Sbjct: 540 LPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+VT++ L+ G C G + EA +L K + +PN++ L VA L
Sbjct: 436 PNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKEL 495
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F ++ F +P + T T +I GL K+G M D G P+ + NVM
Sbjct: 496 FSKL---FADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 552
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ A L++ M+ + + N T+ L+D
Sbjct: 553 FLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 58/374 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ +++ P++VT+ +++ GLC G I A L K+ NV+ FN
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ VA++LF EM + G+ +P+VVT ++I+ LC G M
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETK-GI--RPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D K+GK+ EA L E MIQR ++P+T TYN L++GF
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C ++ +YN LING+CK + VED V L REM G+ + TY T+
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M N VP D Y+ + GL G + A+ +F + +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I N +I+G+CK G++ AWD+F L + PDVVTYN MI G C + Q+A+
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVGEAWDLFCSL----SIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 312 GLLLDMEETGLEPN 325
L M+E G PN
Sbjct: 556 DLFRKMKEDGTLPN 569
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 36/272 (13%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
D++ + +D G M+ P +V N + ++K K E L E M ++
Sbjct: 60 DIIKVDDAVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH 116
Query: 146 NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY+ ++ F S+ G D+ + + L+NGYC + + DAV+L
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
+M+ G + D T+ TL M PD Y T ++GL K
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A+ + + + + + N +ID LCK +++A D+F M+ G+ P+VVT
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE-METKGIRPNVVT 295
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I+ C G+ A+ LL +M E + PN
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPN 327
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 63/303 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L PN+VTFN+LI EG+++EA +L +++ DP+ IT+
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK---------------- 99
N L N +E F + C P++ T +I+G CK
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426
Query: 100 --------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
GF M+ + D++T +++ L GK++
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDT 486
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW---WSKGCRHDVYSYNILINGYC 179
A + + + + ++ N YNT+++G AW S + DV +YN +I+G C
Sbjct: 487 ALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLC 546
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
R +++A L R+M +G ++ TYNTL A N D I + +GFV +A
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA-NLRDCDRAASAELIKEMRSSGFVGDA 605
Query: 240 MKV 242
+
Sbjct: 606 STI 608
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 53/291 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+VT+NSLI LC GR +A+RL + +PNV+TFN L + A L
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EEM+ PD +T +I+G C FM+ + P++ T N + +
Sbjct: 351 HEEMIQR---SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K ++E+ L M QR + NT TY T++ GF S D
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFM 211
+ +Y+IL++G C ++ A+ + + + + + YNT LF
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFC 527
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+++ + PD Y T I GL + EA +F + + T N LI
Sbjct: 528 SLS-IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 176/358 (49%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVAL 69
+ P+++T++++I GLC G A +L KK+ C PNV+ ++T L A+
Sbjct: 78 YEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAM 137
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
EMVN G+ P+VVT ++I+ G C G M+++ + PD VT N++
Sbjct: 138 EFLSEMVNR-GI--SPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
D LSK+G + EA C+ E MI++ V PN TYN LMDG+ S KGC
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCA 254
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
V SYNILI G+CK +++A L EM + + D TY+TL
Sbjct: 255 PSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKL 314
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PD Y+ +DGL K G + EA ++ A+ K I LI G+C
Sbjct: 315 LEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCN 374
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L+ A ++F L G+ PDVVTY +MI G K G +A L DM G PN
Sbjct: 375 FGKLEAARELFSNLFVK-GIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPN 431
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 39/225 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + TP+ VT+++L+KG C +GR +A +L +++ + P+++T+
Sbjct: 271 GRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTY 330
Query: 62 NTLALVAL-------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------M 104
++ L L FE + +P++ T +I G+C G +
Sbjct: 331 -SIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLF 389
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+G++PDVVT VM L K G EA L M PN+CTY
Sbjct: 390 VKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTY-------------- 435
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
N++I G+ ++ + +A L EM+ G AD++T+ L
Sbjct: 436 -------NVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 56/216 (25%)
Query: 165 RHDVYSYNILINGYCKDRN-------------------------------------VEDA 187
R DVY+ ILIN +C + + DA
Sbjct: 7 RPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDA 66
Query: 188 VSLCREMLSEGIRADATTYNTLF----------MAIN--------NVPPDSHVYTTYIDG 229
V L EM+ G D TY+T+ MAI P+ VY+T ID
Sbjct: 67 VKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDS 126
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K+ + EAM+ S + N + T + ++ G C +GR A +F +++ + P
Sbjct: 127 LCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER-NVMP 185
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D VT+NI++ G KEG +A + M E G+EPN
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPN 221
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + P+++T++ ++ GLC +G + EA L K + +PN+ +
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365
Query: 62 NTLALVALNL------FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
L N E N F +PDVVT T +I GL K G M
Sbjct: 366 TILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV 425
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
G P+ T NV+ ++G A L+E M+ R + ++ T+ L D
Sbjct: 426 HGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 182/371 (49%), Gaps = 55/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F P++VT+ +LI GLC G A RL + C PNV +
Sbjct: 145 GKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 204
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A NLF EMV + G+ PD+ T ++I LC
Sbjct: 205 NTIIDSLCKDRQVTEAFNLFSEMVTK-GI--SPDIFTYNSLIHALCNLCEWKHVATLLNE 261
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+D + PDVV+ N + D L K+GK+ EA+ +++ MIQR V PN TY LMDG S
Sbjct: 262 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSE 321
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC +V SYN LINGYCK + ++ A+ L EM + + D TY+T
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYST 381
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + +V P+ Y +D L KN ++ EAM + AI
Sbjct: 382 LIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN 441
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I+ N IDG+C+ G L+ A D+F L + GL PDV TY+IMI+G C+ G +A
Sbjct: 442 LDPDIQVNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEA 500
Query: 311 NGLLLDMEETG 321
+ L +M+E G
Sbjct: 501 SKLFREMDENG 511
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 156/368 (42%), Gaps = 49/368 (13%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
G R+L P+ V FN L+ + L +++ F PN+ T + L
Sbjct: 44 GAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILI 103
Query: 65 -ALVALN----LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ LN F + + +PD T T +I G+ +G M+ +G R
Sbjct: 104 NSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFR 163
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAW 159
PDVVT + + L K G A LL M+Q++ PN YNT++D F
Sbjct: 164 PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNL 223
Query: 160 WS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
+S KG D+++YN LI+ C + +L EM+ I D ++NT+ A+
Sbjct: 224 FSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCK 283
Query: 214 ----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
V P+ YT +DG + EA+KVF + C+ + +
Sbjct: 284 EGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVIS 343
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+G CKI R+ A +F + + L PD VTY+ +IHG C + Q A L +M
Sbjct: 344 YNTLINGYCKIQRIDKAMYLFGEMCRQE-LIPDTVTYSTLIHGLCHVERLQDAIALFHEM 402
Query: 318 EETGLEPN 325
PN
Sbjct: 403 VACSQIPN 410
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 30/238 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ +++ PN+VT+ +L+ G C + EA ++F + C PNVI++
Sbjct: 285 GKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC-----KDGFMMDQGMR- 109
NTL + ++ + FG +C+ PD VT + +I GLC +D + M
Sbjct: 345 NTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVA 404
Query: 110 ----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
P++VT ++ D L K+ + EA LL+ + +++P+ N +DG
Sbjct: 405 CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEA 464
Query: 159 -------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG + DV++Y+I+ING C+ +++A L REM G + YNT+
Sbjct: 465 ARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 522
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 50/233 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L G + P+ VT+++LI GLC R+ +A LF ++ PN++T+
Sbjct: 356 RIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 415
Query: 63 TL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------- 103
L A+ L E G PD+ IDG+C+ G +
Sbjct: 416 ILLDYLCKNRYLAEAMALLKAIE------GSNLDPDIQVNNIAIDGMCRAGELEAARDLF 469
Query: 104 ---MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+G++PDV T ++M + L + G ++EA+ L M + N C YNT+ GF
Sbjct: 470 SNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF--- 526
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
++ A+ L +EM++ G ADA+T TLF+ +
Sbjct: 527 ------------------LRNNETSRAIQLLQEMVARGFSADASTM-TLFVKM 560
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 188/411 (45%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL P+ TF +LI+GLC EG+I EA LF K+ PNV+T
Sbjct: 113 LNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVT 172
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 173 YGTLINGLCKVGNTSAAIRLLRSM--EQGN-CQPDVVIYTSIIDSLCKDRQVTEAFNLFS 229
Query: 102 FMMDQGMRPD-----------------------------------VVTLNVMTDNLSKDG 126
M+ QG+ PD VV + + D L K+G
Sbjct: 230 QMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEG 289
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
K+ EA+ ++++MIQR V P+ TY TLMDG S KG DV SY
Sbjct: 290 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 349
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
LINGYCK ++ A+ L EM + D TYNTL + +V
Sbjct: 350 TLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVAR 409
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y+ +D L KN + EAM + AI I+ N +IDG+C+ G L+ A
Sbjct: 410 GQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAA 469
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L + GL P V TYNIMIHG CK G +AN L ++M+ P+
Sbjct: 470 RDLFSNL-SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPD 519
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 170/404 (42%), Gaps = 100/404 (24%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT------------ 60
R+L P++V F L+ + L +++ F PNV T
Sbjct: 55 RLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLN 114
Query: 61 -----FNTLALV---------------------------ALNLFEEMVNEFGVICKPDVV 88
F+ LA + AL+LF++M++E +P+VV
Sbjct: 115 RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG---FQPNVV 171
Query: 89 TCTNIIDGLCKDG---------FMMDQGM-RPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T +I+GLCK G M+QG +PDVV + D+L KD ++ EA L M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231
Query: 139 IQRDVNPNTCTYNTLMDGF----AWWSKGCRH---------------DVYSYNILINGYC 179
+ + ++P+ TY +L+ W +H DV ++ +++ C
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEW-----KHVTTLLNQMVNSKILPDVVIFSTVVDALC 286
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSH 221
K+ V +A + M+ G+ D TY TL M PD
Sbjct: 287 KEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVI 346
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YTT I+G K + +AM +F + + + +T N L+ GLC +GRL+ A +FH +
Sbjct: 347 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEM 406
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PD+VTY+I++ CK ++A LL +E + L P+
Sbjct: 407 VAR-GQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPD 449
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 42/225 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+ P+ T+N+L+ GLC GR+ +A LF ++ P+++T++ L +L EE +
Sbjct: 376 WIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAM 435
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
I PD+ IIDG+C+ G + +G+ P V T N+M L
Sbjct: 436 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K G + EAN L M D +P+ CTYNT+ GF ++
Sbjct: 496 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGF---------------------LQNN 534
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
A+ L EML+ G AD+ F+ ++ + D Y +I
Sbjct: 535 ETLRAIQLLEEMLARGFSADSC-----FLMLSVLSEDDRRYFIFI 574
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 183/376 (48%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S +L+ R++ + F PN VT+ ++K +C G+ A L +K+ + + +
Sbjct: 191 GKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
Query: 62 NTLALV---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ + A NLF EM + F K D++ T +I G C G
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGF----KADIIIYTTLIRGFCYAGRWDDGAKLLR 306
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ + + PDVV + + D K+GK+ EA L + MIQR ++P+T TY +L+DGF
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKGC ++ ++NILINGYCK ++D + L R+M G+ AD TYN
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M V PD Y +DGL NG +A+++F I
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKS 486
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K L I N +I G+C ++ AWD+F L G+ PDV TYNIMI G CK+G +
Sbjct: 487 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSE 545
Query: 310 ANGLLLDMEETGLEPN 325
A+ L MEE G PN
Sbjct: 546 ADLLFRKMEEDGHSPN 561
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 158/348 (45%), Gaps = 46/348 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LV--AL 69
+P+ VT+ SLI G C E ++ +A + + C PN+ TFN L L+ L
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
LF +M + GV+ D VT +I G C+ G M+ + +RPD+V+ ++
Sbjct: 408 ELFRKM-SLRGVVA--DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCR 165
D L +G+ E+A + E + + + + YN ++ G AW KG +
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV +YNI+I G CK ++ +A L R+M +G + TYN L A + D+
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA-HLGEGDATKSAK 583
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLT------IETCNCLIDGLCKIGRLKIAWDIFH 279
I+ + + GF ++A + A+ +L + T L+ C + +D
Sbjct: 584 LIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFC-LEENASVYDAPT 642
Query: 280 ML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ G P+VVTYN +I G + G+L M E G +PN
Sbjct: 643 LFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPN 690
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 139/359 (38%), Gaps = 86/359 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ TFN LI G C I + LF+K+++ + +T+NTL VA L
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------------FMMD---------- 105
F+EMV+ +PD+V+ ++DGLC +G +D
Sbjct: 445 FQEMVSRR---VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501
Query: 106 -------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+G++PDV T N+M L K G + EA+ L M + +PN
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
CT YNILI + + + + L E+ G DA+T
Sbjct: 562 GCT---------------------YNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTL 600
Query: 207 NTLFMAINNV-----PPDSHVYTTYIDG--LYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+ + PD +TT + L +N V +A +F + + T N
Sbjct: 601 RFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYN 660
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+I GL + + + + G P+ VT + I G CK+ H A LL ME
Sbjct: 661 TVIKGLLNGNMISQVPGVLDQMFER-GCQPNAVTKSTFISGLCKQDLHGSAILLLRKME 718
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 35/219 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N +I GLC +G + EA LF+K+ PN T+N L A + L
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
Query: 72 FEEMVN-EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN--LSKDGKM 128
EE+ F V D T + L + M+ G PDV T + L ++ +
Sbjct: 585 IEEIKRCGFSV----DASTLRFALSTLAR---MLKAGHEPDVFTFTTLLRPFCLEENASV 637
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+A L + M PN TYNT++ G + +GC+ + + +
Sbjct: 638 YDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTF 697
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
I+G CK A+ L R+M E D TT + + I
Sbjct: 698 ISGLCKQDLHGSAILLLRKM--ENDNEDVTTKKKILIHI 734
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY----TT 225
SY + D +DAV L +EM R ++ LF + V
Sbjct: 39 SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGNHKCVLTIE----TCNCLIDGLCKIGR 270
+ G+ N + L M FSA+G L E T + LI+GLC GR
Sbjct: 99 ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI-IKLGYEPDTVTFSTLINGLCLEGR 157
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ +++ G P ++T N +++G C G+ A L+ M ETG +PN
Sbjct: 158 VSEALELVDRMVEM-GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 183/376 (48%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S +L+ R++ + F PN VT+ ++K +C G+ A L +K+ + + +
Sbjct: 191 GKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
Query: 62 NTLALV---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ + A NLF EM + F K D++ T +I G C G
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGF----KADIIIYTTLIRGFCYAGRWDDGAKLLR 306
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ + + PDVV + + D K+GK+ EA L + MIQR ++P+T TY +L+DGF
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKGC ++ ++NILINGYCK ++D + L R+M G+ AD TYN
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M V PD Y +DGL NG +A+++F I
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKS 486
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K L I N +I G+C ++ AWD+F L G+ PDV TYNIMI G CK+G +
Sbjct: 487 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSE 545
Query: 310 ANGLLLDMEETGLEPN 325
A+ L MEE G PN
Sbjct: 546 ADLLFRKMEEDGHSPN 561
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 37/257 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LV--AL 69
+P+ VT+ SLI G C E ++ +A + + C PN+ TFN L L+ L
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
LF +M + GV+ D VT +I G C+ G M+ + +RPD+V+ ++
Sbjct: 408 ELFRKM-SLRGVVA--DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCR 165
D L +G+ E+A + E + + + + YN ++ G AW KG +
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV +YNI+I G CK ++ +A L R+M +G + TYN L A + D+
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA-HLGEGDATKSAK 583
Query: 226 YIDGLYKNGFVLEAMKV 242
I+ + + GF ++A V
Sbjct: 584 LIEEIKRCGFSVDASTV 600
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 60/232 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ TFN LI G C I + LF+K+++ + +T+NTL VA L
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------------FMMD---------- 105
F+EMV+ +PD+V+ ++DGLC +G +D
Sbjct: 445 FQEMVSRR---VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501
Query: 106 -------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+G++PDV T N+M L K G + EA+ L M + +PN
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
CTYN L+ + I G+ D + V + +MLS+G
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAS---TVKMVVDMLSDG 610
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY----TT 225
SY + D +DAV L +EM R ++ LF + V
Sbjct: 39 SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGNHKCVLTIE----TCNCLIDGLCKIGR 270
+ G+ N + L M FSA+G L E T + LI+GLC GR
Sbjct: 99 ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI-IKLGYEPDTVTFSTLINGLCLEGR 157
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ +++ G P ++T N +++G C G+ A L+ M ETG +PN
Sbjct: 158 VSEALELVDRMVE-MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 187/410 (45%), Gaps = 90/410 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L+ R++ P+++T N+L+ GLC G+ EA L K+ + C PN +T+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ +A+ L +M E + K D V + IIDGLCK G
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNI--KLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288
Query: 103 -----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
M+ + + P+VVT +V+ D+ K+GK
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNI 173
+ EA L + MI R + P+T TY +L+DGF SKGC ++ ++NI
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LINGYCK ++D + L R+M G+ AD TYNTL M
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
VPP+ Y +DGL NG +A+++F I K L I N +I G+C ++ AW
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 528
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L G+ P V TYNIMI G CK+G +A L MEE G P+
Sbjct: 529 DLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+ T + +I C ++ A K+ +PN ITF+TL AL L
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ MV E G KPD++T +++GLC G M++ G +P+ VT + + +
Sbjct: 182 DRMV-EMG--HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 238
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDV 168
K G+ A LL M +R++ + Y+ ++DG KG ++
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YNILI G+C +D L R+M+ I + T++ L
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD+ YT+ IDG K + +A ++ + + C I T N LI+G CK R
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++F M G+ D VTYN +I GFC+ G+ A L +M + PN
Sbjct: 419 IDDGLELFRK-MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 472
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 122/305 (40%), Gaps = 70/305 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL ++ PN+VTF+ LI EG++ EA L K++ P+ IT+
Sbjct: 312 GRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITY 371
Query: 62 NTLA--------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+L L N +++ G C P++ T +I+G CK DG M
Sbjct: 372 TSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G+ D VT N + + GK+ A L + M+ R V PN TY L+DG
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 158 -------------------------------------AW------WSKGCRHDVYSYNIL 174
AW KG + V +YNI+
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I G CK + +A L R+M +G D TYN L A + D+ I+ L + G
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA-HLGDGDATKSVKLIEELKRCG 608
Query: 235 FVLEA 239
F ++A
Sbjct: 609 FSVDA 613
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 68/268 (25%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
D K ++A L MI P ++ L A KG H++Y+
Sbjct: 66 DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 125
Query: 171 YNILINGYCKDRN-----------------------------------VEDAVSLCREML 195
+I+IN +C+ R V +A+ L M+
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 196 SEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVL 237
G + D T NTL M P++ Y ++ + K+G
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 245
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
AM++ + L + +IDGLCK G L A+++F+ M+ G+T +++TYNI+
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-MEMKGITTNIITYNIL 304
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I GFC G+ LL DM + + PN
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 25/177 (14%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT----T 225
SY + D +DA+ L R+M+ ++ LF AI V
Sbjct: 55 SYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM 114
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGN------HKCVLTIETCNCLIDGLCKI 268
+ G+ N + L M FSA+G +T T LI+GLC
Sbjct: 115 ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFST---LINGLCLE 171
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++ +++ G PD++T N +++G C G+ +A L+ M E G +PN
Sbjct: 172 GRVSEALELVDRMVE-MGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN 227
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 199/405 (49%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+ +LG+++ + P+ TFN+LI GLC E ++ EA L ++ C PNV+T+N++
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVN 178
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+AL+L +M +E V K DV T + IID LC+DG M +G
Sbjct: 179 GICKSGDTSLALDLLRKM-DERNV--KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 235
Query: 108 MR-----------------------------------PDVVTLNVMTDNLSKDGKMEEAN 132
++ P+V+T NV+ D K+GK++EAN
Sbjct: 236 IKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEAN 295
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGY 178
L + MI + ++PNT TYN+LMDG+ ++ C D+ ++ LI GY
Sbjct: 296 ELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGY 355
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
CK + V++ + L R++ G+ A+ TY+ L M V PD
Sbjct: 356 CKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDV 415
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y +DGL NG + +A+++F + K L I +I+G+CK G+++ AW++F
Sbjct: 416 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCS 475
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L G+ P+V+TY +MI G CK+G +AN LL MEE G EPN
Sbjct: 476 L-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPN 519
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 137/287 (47%), Gaps = 55/287 (19%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGL------------CKDGFMMDQGMRPDVVTL 115
A++LF+EM+ + P +V + G+ CK M G+ ++ TL
Sbjct: 49 AIDLFQEMIRSRPL---PSLVDFSRFFSGVASTKQFNLVLDFCKK--MELNGIAHNIYTL 103
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+M + + K A +L +++ P+T T+NTL++G SK
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC+ +V +YN ++NG CK + A+ L R+M ++AD TY+T+
Sbjct: 164 NGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTI------------ 211
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW-DIFHM 280
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W D +
Sbjct: 212 -----IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK----WNDGVQL 262
Query: 281 L--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L M + + P+V+T+N++I F KEG+ Q+AN L +M G+ PN
Sbjct: 263 LKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPN 309
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 142/355 (40%), Gaps = 85/355 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G LL + PN++TFN LI EG++ EA L+K++ PN IT+
Sbjct: 254 GKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITY 313
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR------ 109
N+L N E N ++ C PD+VT T++I G CK +D+GM+
Sbjct: 314 NSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVK-RVDEGMKLFRKIS 372
Query: 110 -----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
+ VT +++ + GK+E A L + M+ V P+ TY L+DG
Sbjct: 373 KRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLE 432
Query: 157 -----FAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F K + D+ Y I+I G CK VEDA +L + +G++
Sbjct: 433 KALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVK---------- 482
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
P+ YT I GL K G + EA
Sbjct: 483 -------PNVMTYTVMISGLCKKGSLSEA------------------------------- 504
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I M+ G P+ TYN +I ++G + L+ +M+ G +
Sbjct: 505 -----NILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 554
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 105/240 (43%), Gaps = 78/240 (32%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P++VTF SLIKG C R+ E +LF+K++ N +T++ L +A
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEE 401
Query: 71 LFEEMVNEFGVICKPDVVT--------CTN---------------------------IID 95
LF+EMV+ GV+ PDV+T C N II+
Sbjct: 402 LFQEMVS-LGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIE 458
Query: 96 GLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
G+CK G + D +G++P+V+T VM L K G + EAN LL M + P
Sbjct: 459 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEP 518
Query: 146 NTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
N CTYNT LI + +D ++ + L EM S G ADA++
Sbjct: 519 NDCTYNT---------------------LIRAHLRDGDLTASAKLIEEMKSCGFSADASS 557
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 189/402 (47%), Gaps = 90/402 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
++G++ P+ +TFN+LI GLC EG+I EA LF ++ +PNVI++NT+
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
++A+ +F +M G KP+VVT IID LCKD M+D+G+ P
Sbjct: 213 KNGNTIMAVRVFRKMEQNRG---KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269
Query: 111 DVVT-----------------------------------LNVMTDNLSKDGKMEEANCLL 135
DVVT N++ D L K+G + EA C+
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVS 329
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKD 181
E M ++ PN TYN LMDG+ + KGC ++ SYNILINGYCK
Sbjct: 330 ETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKS 389
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVY 223
+ + +A L EM + + D TY+TL + + + PD Y
Sbjct: 390 KRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAY 449
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ +DG K+G + EA+K+ + + I LI G+ G+L++A ++F L
Sbjct: 450 SILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSA 509
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ PD+ TYN+MI G KEG +A ME+ G P+
Sbjct: 510 D-GIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPD 550
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 110/238 (46%), Gaps = 33/238 (13%)
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
N S D +++A M++ + P+ + + A + G
Sbjct: 69 SNTSNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVT 128
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
H+VYS N+LIN C+ +V+ AVS+ +M GI+ DA T+NTL
Sbjct: 129 HNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGL 188
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+ Y T I+GL KNG + A++VF + ++ + T N +ID LCK
Sbjct: 189 FNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RL F M + G+ PDVVTYN ++HGFC GQ +A L +M + P+
Sbjct: 249 -DRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ +V +LNV+ + L + ++ A ++ M + + P+ T+NTL++G
Sbjct: 126 GVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEA 185
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
WS G +V SYN +ING CK+ N AV + R+M + + TYNT+
Sbjct: 186 VGLFNEMVWS-GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTI-- 242
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
ID L K+ V EA++ S + + + T N ++ G C +G+L
Sbjct: 243 ---------------IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQL 287
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F M + PD VT+NI++ G CKEG +A + M E G EPN
Sbjct: 288 NEATRLFKE-MVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPN 340
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 43/220 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL + TP+ VT+++L++GLC GR EA LFK++ P+++ ++ L
Sbjct: 398 LLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFC 457
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRP 110
AL L +EM KP+++ T +I G+ K+ F + G+RP
Sbjct: 458 KHGHLDEALKLLKEMHERR---IKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRP 514
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D+ T NVM L K+G +EA M P++C S
Sbjct: 515 DIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSC---------------------S 553
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
YN++I G+ ++++ A+ L EM+ + AD++T+ L
Sbjct: 554 YNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 187/410 (45%), Gaps = 90/410 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L+ R++ P+++T N+L+ GLC G+ EA L K+ + C PN +T+
Sbjct: 270 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 329
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ +A+ L +M E + K D V + IIDGLCK G
Sbjct: 330 GPVLNVMCKSGQTALAMELLRKM-EERNI--KLDAVKYSIIIDGLCKHGSLDNAFNLFNE 386
Query: 103 -----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
M+ + + P+VVT +V+ D+ K+GK
Sbjct: 387 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 446
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+ EA L + MI R + P+T TY +L+DGF SKGC ++ ++NI
Sbjct: 447 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 506
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LINGYCK ++D + L R+M G+ AD TYNTL M
Sbjct: 507 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 566
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
VPP+ Y +DGL NG +A+++F I K L I N +I G+C ++ AW
Sbjct: 567 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 626
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L G+ P V TYNIMI G CK+G +A L MEE G P+
Sbjct: 627 DLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 675
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+ T + +I C ++ A K+ +PN ITF+TL AL L
Sbjct: 220 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 279
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ MV E G KPD++T +++GLC G M++ G +P+ VT + + +
Sbjct: 280 DRMV-EMG--HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 336
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDV 168
K G+ A LL M +R++ + Y+ ++DG KG ++
Sbjct: 337 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 396
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YNILI G+C +D L R+M+ I + T++ L
Sbjct: 397 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 456
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD+ YT+ IDG K + +A ++ + + C I T N LI+G CK R
Sbjct: 457 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 516
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++F M G+ D VTYN +I GFC+ G+ A L +M + PN
Sbjct: 517 IDDGLELFRK-MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 570
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 123/308 (39%), Gaps = 70/308 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL ++ PN+VTF+ LI EG++ EA L K++ P+ IT+
Sbjct: 410 GRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITY 469
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+L L N +++ G C P++ T +I+G CK DG M
Sbjct: 470 TSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKM 527
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G+ D VT N + + GK+ A L + M+ R V PN TY L+DG
Sbjct: 528 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 587
Query: 158 -------------------------------------AW------WSKGCRHDVYSYNIL 174
AW KG + V +YNI+
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I G CK + +A L R+M +G D TYN L A + D+ I+ L + G
Sbjct: 648 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA-HLGDGDATKSVKLIEELKRCG 706
Query: 235 FVLEAMKV 242
F ++A +
Sbjct: 707 FSVDASTI 714
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 54/217 (24%)
Query: 162 KGCRHDVYSYNI-----------------------------------LINGYCKDRNVED 186
KG H++Y+ +I LING C + V +
Sbjct: 215 KGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 274
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A+ L M+ G + D T NTL M P++ Y ++
Sbjct: 275 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 334
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
+ K+G AM++ + L + +IDGLCK G L A+++F+ M+ G+T
Sbjct: 335 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-MEMKGIT 393
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++TYNI+I GFC G+ LL DM + + PN
Sbjct: 394 TNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 430
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAIN 214
V ++ L + K + + ++LC++M +GI + T + + F A+
Sbjct: 186 VIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMG 245
Query: 215 NV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P++ ++T I+GL G V EA+++ + + T N L++GLC G
Sbjct: 246 KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSG 305
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ A + +++ G P+ VTY +++ CK GQ A LL MEE ++
Sbjct: 306 KEAEAMLLIDKMVEY-GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 358
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT----T 225
SY + D +DA+ L R+M+ ++ LF AI V
Sbjct: 153 SYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM 212
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGNHKCVLTIE----TCNCLIDGLCKIGR 270
+ G+ N + L M FSA+G L E T + LI+GLC GR
Sbjct: 213 ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKI-IKLGYEPNTITFSTLINGLCLEGR 271
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ +++ G PD++T N +++G C G+ +A L+ M E G +PN
Sbjct: 272 VSEALELVDRMVEM-GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN 325
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/364 (32%), Positives = 182/364 (50%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LG+++ F P++VTF SL+ G C RI +A LF ++ PNV+T+ TL
Sbjct: 139 FLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLC 198
Query: 68 ---ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
LN E+ N+ G +P+VVT +++ GLC+ G MM +G++P+V+
Sbjct: 199 KNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVI 258
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW------------- 160
T + D K GK+ EA L +VMIQ V P+ TY L++G +
Sbjct: 259 TFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLM 318
Query: 161 -SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
S G + +Y LI+G+CK + VED + EM +G+ A+ TY L
Sbjct: 319 ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRP 378
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M PPD Y +DGL NG+V +A+ +F + + + I T +
Sbjct: 379 DVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTII 438
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CK+G+++ A+D+F L + G+ P+V+TY MI GFC+ G +A+ L M+E G
Sbjct: 439 IQGMCKVGKVEDAFDLFCSLF-SKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDG 497
Query: 322 LEPN 325
PN
Sbjct: 498 FLPN 501
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 138/318 (43%), Gaps = 54/318 (16%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCT 91
EA LF ++ P+++ F L V ++LFE+M G+ P + TC
Sbjct: 65 EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQM-QILGI--SPVLYTCN 121
Query: 92 NIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+++ +C+ G MM G PD+VT + ++E+A L + ++
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181
Query: 142 DVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
PN TY TL+ G R +V +YN L++G C+ DA
Sbjct: 182 GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDA 241
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L R+M+ GI+ + T+ L ID K G ++EA +++ +
Sbjct: 242 AWLLRDMMKRGIQPNVITFTAL-----------------IDAFVKVGKIMEAKELYKVMI 284
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T LI+GLC GRL A +F+ LM++ G P+ VTY +IHGFCK +
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFY-LMESNGYYPNEVTYTTLIHGFCKSKRV 343
Query: 308 QKANGLLLDMEETGLEPN 325
+ + +M + GL N
Sbjct: 344 EDGTKIFYEMSQKGLVAN 361
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 47/276 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR S LL ++ PN++TF +LI G+I+EA L+K + P+V T
Sbjct: 235 IGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFT 294
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MM 104
+ L L +E F ++ P+ VT T +I G CK DG M
Sbjct: 295 YTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMS 354
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----- 159
+G+ + +T V+ G+ + A + M R P+ TYN L+DG +
Sbjct: 355 QKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVE 414
Query: 160 ---------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ ++ +Y I+I G CK VEDA L + S+G++ + T
Sbjct: 415 KALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVIT----- 469
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I G + GF+ EA +F +
Sbjct: 470 ------------YTTMISGFCRRGFIHEADALFKKM 493
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 177/335 (52%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N++I GLC G AA L KK+ C PN++T++TL +L L E ++
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F + PD+ T T++I GLCK M + PD+VT NV+ D K
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
+GK+ EA +L+ M + V PN TY++LM G++ W+ KGC+ +++S
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YNILINGYCK + +++A+ L EM+ +G+ + +YNTL I G
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL-----------------IHGF 418
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G + EA +F + + + + T + L+DG CK G L A+ +F MQ+ L P+
Sbjct: 419 CQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRA-MQSTYLKPN 477
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V Y I++H CK G H+ A L ++ GL+P+
Sbjct: 478 LVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPH 512
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 169/358 (47%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+PN+ T + + C R+ + K+ P ++TF TL A+
Sbjct: 124 LSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF++MV + C+PDV T II+GLCK G M + G +P++VT + +
Sbjct: 184 ELFDDMVAKG---CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLI 240
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAWWSKGCR----------- 165
D+L +D + EA + M + ++P+ TY +L+ G F+ W +
Sbjct: 241 DSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIM 300
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D+ ++N+L++ +CK+ V +A+ + + M G+ + TY++L
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M P+ Y I+G K + EAM++F+ + + + N LI G C+
Sbjct: 361 FHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQ 420
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G+L+ A D+F + N L PD+ TY+I++ GFCK+G KA L M+ T L+PN
Sbjct: 421 LGKLREAQDLFRNMCTNGNL-PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 477
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 152/354 (42%), Gaps = 90/354 (25%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++ T+ SLI+GLC R EA+ L ++ P+++TFN L AL
Sbjct: 265 SPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALG 324
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDG--LCKD--------GFMMDQGMRPDVVTLNVMTD 120
+ + M E GV +P+VVT ++++ G L D M+ +G +P++ + N++ +
Sbjct: 325 VLKTM-TEMGV--EPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILIN 381
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K +++EA L MI + + PN +YNTL+ GF K G
Sbjct: 382 GYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLP 441
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA-------------- 212
D+++Y+IL++G+CK + A L R M S ++ + Y L A
Sbjct: 442 DLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLF 501
Query: 213 ----INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ + P +YTT I+GL K G + EA++ F
Sbjct: 502 SELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRN----------------------- 538
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M+ G PD ++YN++I G + +A L+ +M + G
Sbjct: 539 -------------MEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGF 579
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 119/301 (39%), Gaps = 72/301 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VTFN L+ C EG++ EA + K + +PNV+T+++L + A L
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M+ + CKP++ + +I+G CK M+ QG+ P+ V+ N +
Sbjct: 361 FHVMITKG---CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHG 417
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------------------ 157
+ GK+ EA L M P+ TY+ L+DGF
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 477
Query: 158 -------------------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ +G + V Y +ING CK+ +++A+ R
Sbjct: 478 LVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFR 537
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M ++G D +YN + + +S + + GF+ + S + K V
Sbjct: 538 NMEADGCPPDEISYNVIIRGLLQHKDESRAL-LLVGEMRDRGFIADVRPCLSEVCQGKKV 596
Query: 253 L 253
+
Sbjct: 597 M 597
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 54/216 (25%)
Query: 163 GCRHDVYSYNIL-----------------------------------INGYCKDRNVEDA 187
G ++Y+ +I ING CK A
Sbjct: 123 GLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQA 182
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDG 229
V L +M+++G + D TYNT+ + + P+ Y+T ID
Sbjct: 183 VELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDS 242
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L ++ V EA+ +FS + I T LI GLCK R K A + + M + + P
Sbjct: 243 LCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNE-MTSLNIMP 301
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+VT+N+++ FCKEG+ +A G+L M E G+EPN
Sbjct: 302 DIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + P+MVT+NS++ G+C G A + +K+ +V T+
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTY 231
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ A++LF+EM + G+ K VVT +++ GLCK G
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETK-GI--KSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + + P+V+T NV+ D K+GK++EAN L + MI R ++PN TYNTLMDG+ ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C D+ ++ LI GYC + V+D + + R + G+ A+A TY+
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG + +A+++F + K
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I +I+G+CK G+++ AW++F L G+ P+V+TY +MI G CK+G +A
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 311 NGLLLDMEETGLEPN 325
N LL MEE G PN
Sbjct: 528 NILLRKMEEDGNAPN 542
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 55/287 (19%)
Query: 68 ALNLFEEMVNE------------FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL 115
A+ LF+EM+ F I + N++ CK + G+ ++ TL
Sbjct: 72 AIALFQEMIRSRPLPGLVDFSRFFSAIARTKQF---NLVLDFCKQ--LELNGIAHNIYTL 126
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+M + + K A +L +++ P+T T+NTL++G K
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVE 186
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC+ D+ +YN ++NG C+ + A + R+M ++AD TY+T+
Sbjct: 187 NGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTI------------ 234
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W+ +L
Sbjct: 235 -----IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK----WNDGALL 285
Query: 282 MQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + P+V+T+N+++ F KEG+ Q+AN L +M G+ PN
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G +LL ++ PN++TFN L+ EG++ EA L+K++ PN+IT+
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-------- 102
NTL N E N ++ C PD+VT T++I G C DG
Sbjct: 337 NTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK 396
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PDV+T ++ D L +GK+E+
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILIN 176
A + E + + ++ Y T+++G AW KG + +V +Y ++I+
Sbjct: 457 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G CK ++ +A L R+M +G + TYNTL A
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 47/224 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I N VT++ L++G C G+I A LF+++ P+V+T+
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMD------ 105
L AL +FE++ K D +V T II+G+CK G + D
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKS-----KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G++P+V+T VM L K G + EAN LL M + PN CTYNT
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT--------- 548
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + +D ++ + L EM S G ADA++
Sbjct: 549 ------------LIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 180/371 (48%), Gaps = 55/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L + + F P++VT+ +L+ GLC G A RL + + C PNVI +
Sbjct: 234 GKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAY 293
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A NLF EM+ + G+ PD+ T ++I LC
Sbjct: 294 NTIIDSLCKDRQVTEAFNLFSEMITK-GI--SPDIFTYNSLIHALCNLCEWKHVTTLLNE 350
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M++ + P+VV + + D L K+G + A+ ++++MI+R V P+ TY LMDG S
Sbjct: 351 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 410
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC +V SYNILINGYC+ + ++ A+ L +M +G+ AD TYNT
Sbjct: 411 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD Y +D L KN + EAM + AI
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I N IDG+C+ G L+ A D+F L + GL PDV TYNIMIHG CK G +A
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVRTYNIMIHGLCKRGLLDEA 589
Query: 311 NGLLLDMEETG 321
N L M+E G
Sbjct: 590 NKLFRKMDENG 600
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 156/361 (43%), Gaps = 49/361 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL- 71
R+L P+ V F L+ + L +++ F P+V T N L +L
Sbjct: 140 RMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLR 199
Query: 72 -----FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLN 116
F + + C+PD T +I GLC +G + + +G +PDVVT
Sbjct: 200 RLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYG 259
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWS----K 162
+ + L K G A LL M+Q++ PN YNT++D F +S K
Sbjct: 260 TLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 319
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------- 213
G D+++YN LI+ C + +L EM++ I + ++T+ A+
Sbjct: 320 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIA 379
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
V PD YT +DG + EA+KVF + + CV + + N LI+G
Sbjct: 380 HDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILING 439
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
C+I R+ A + M GL D VTYN +IHG C G+ Q A L +M +G P
Sbjct: 440 YCQIQRMDKAMGLLEQ-MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 498
Query: 325 N 325
+
Sbjct: 499 D 499
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 155/401 (38%), Gaps = 90/401 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S LL ++ PN++ +N++I LC + ++ EA LF ++ P++ T
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 327
Query: 61 FNTLALVALNLFE---------EMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N+L NL E EMVN P+VV + ++D LCK+G
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNS---KIMPNVVVFSTVVDALCKEGMIAIAHDVVD 384
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ PDVVT + D +M+EA + + M+ + PN +YN L++G+
Sbjct: 385 MMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQ 444
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G D +YN LI+G C ++ A++L EM++ G D TY
Sbjct: 445 RMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYR 504
Query: 208 TLF-----------------------------------------------------MAIN 214
L ++
Sbjct: 505 ILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSK 564
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ PD Y I GL K G + EA K+F + + C N +I G + A
Sbjct: 565 GLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGA 624
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ ++ G + DV T +++ +G Q L L
Sbjct: 625 TQLLQEMLAE-GFSADVSTTTLIVEMLSDDGLDQSFERLRL 664
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + P++VT+NS++ G+C G A L +K+ +V T+
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ A++LF+EM + G+ K VVT +++ GLCK G
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETK-GI--KSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + + P+V+T NV+ D K+GK++EAN L + MI R ++PN TYNTLMDG+ ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C D+ ++ LI GYC + V+D + + R + G+ A+A TY+
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG + +A+++F + K
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I +I+G+CK G+++ AW++F L G+ P+V+TY +MI G CK+G +A
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 311 NGLLLDMEETGLEPN 325
N LL MEE G PN
Sbjct: 528 NILLRKMEEDGNAPN 542
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 55/287 (19%)
Query: 68 ALNLFEEMVNE------------FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL 115
A+ LF+EM+ F I + N++ CK + G+ ++ TL
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF---NLVLDFCKQ--LELNGIAHNIYTL 126
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+M + + K A +L +++ P+T T+NTL+ G K
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC+ DV +YN ++NG C+ + A+ L R+M ++AD TY+T+
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI------------ 234
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W+ +L
Sbjct: 235 -----IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK----WNDGALL 285
Query: 282 MQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + P+V+T+N+++ F KEG+ Q+AN L +M G+ PN
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G +LL ++ PN++TFN L+ EG++ EA L+K++ PN+IT+
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-------- 102
NTL N E N ++ C PD+VT T++I G C DG
Sbjct: 337 NTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK 396
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PDV+T ++ D L +GK+E+
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILIN 176
A + E + + ++ Y T+++G AW KG + +V +Y ++I+
Sbjct: 457 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G CK ++ +A L R+M +G + TYNTL A
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 47/224 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I N VT++ L++G C G+I A LF+++ P+V+T+
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMD------ 105
L AL +FE++ K D +V T II+G+CK G + D
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKS-----KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G++P+V+T VM L K G + EAN LL M + PN CTYNT
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT--------- 548
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + +D ++ + L EM S G ADA++
Sbjct: 549 ------------LIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + P++VT+NS++ G+C G A L +K+ +V T+
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ A++LF+EM + G+ K VVT +++ GLCK G
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETK-GI--KSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + + P+V+T NV+ D K+GK++EAN L + MI R ++PN TYNTLMDG+ ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C D+ ++ LI GYC + V+D + + R + G+ A+A TY+
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG + +A+++F + K
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I +I+G+CK G+++ AW++F L G+ P+V+TY +MI G CK+G +A
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 311 NGLLLDMEETGLEPN 325
N LL MEE G PN
Sbjct: 528 NILLRKMEEDGNAPN 542
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 55/287 (19%)
Query: 68 ALNLFEEMVNE------------FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL 115
A+ LF+EM+ F I + N++ CK + G+ ++ TL
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF---NLVLDFCKQ--LELNGIAHNIYTL 126
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+M + + K A +L +++ P+T T+NTL+ G K
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC+ DV +YN ++NG C+ + A+ L R+M ++AD TY+T+
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI------------ 234
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W+ +L
Sbjct: 235 -----IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK----WNDGALL 285
Query: 282 MQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + P+V+T+N+++ F KEG+ Q+AN L +M G+ PN
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G +LL ++ PN++TFN L+ EG++ EA L+K++ PN+IT+
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-------- 102
NTL N E N ++ C PD+VT T++I G C DG
Sbjct: 337 NTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK 396
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PDV+T ++ D L +GK+E+
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILIN 176
A + E + + ++ Y T+++G AW KG + +V +Y ++I+
Sbjct: 457 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G CK ++ +A L R+M +G + TYNTL A
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 47/224 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I N VT++ L++G C G+I A LF+++ P+V+T+
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMD------ 105
L AL +FE++ K D +V T II+G+CK G + D
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKS-----KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G++P+V+T VM L K G + EAN LL M + PN CTYNT
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT--------- 548
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + +D ++ + L EM S G ADA++
Sbjct: 549 ------------LIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 196/405 (48%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+ +LG+++ + P+ TFN+LIKGL EG++ EA L ++ C P+V+T+N++
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 191
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------------- 101
+AL+L +M E V K DV T + IID LC+DG
Sbjct: 192 GICRSGDTSLALDLLRKM-EERNV--KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248
Query: 102 -----------------------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
M+ + + P+V+T NV+ D K+GK++EAN
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEAN 308
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGY 178
L + MI R ++PN TYNTLMDG+ ++ C D+ ++ LI GY
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C + V+D + + R + G+ A+A TY+ L M + V PD
Sbjct: 369 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 428
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y +DGL NG + +A+++F + K L I +I+G+CK G+++ AW++F
Sbjct: 429 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS 488
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L G+ P+V+TY +MI G CK+G +AN LL MEE G PN
Sbjct: 489 L-PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 135/285 (47%), Gaps = 51/285 (17%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---GFMMD-------QGMRPDVVTLNV 117
A+ LF+EM+ + P +V + + + ++D G+ ++ TLN+
Sbjct: 62 AIALFQEMIRSRPL---PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNI 118
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
M + + K A +L +++ P+T T+NTL+ G K G
Sbjct: 119 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENG 178
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C+ DV +YN ++NG C+ + A+ L R+M ++AD TY+T+
Sbjct: 179 CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI-------------- 224
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W+ +L++
Sbjct: 225 ---IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK----WNDGALLLK 277
Query: 284 N---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + P+V+T+N+++ F KEG+ Q+AN L +M G+ PN
Sbjct: 278 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 322
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 156/391 (39%), Gaps = 85/391 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I N VT++ L++G C G+I A LF+++ P+V+T+
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 432
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMD------ 105
L AL +FE++ K D +V T II+G+CK G + D
Sbjct: 433 ILLDGLCDNGKLEKALEIFEDLQKS-----KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 487
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DG 156
+G++P+V+T VM L K G + EAN LL M + PN CTYNTL+ DG
Sbjct: 488 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDG 547
Query: 157 FAWWSK---------GCRHDVYSYNILIN-----------GYCKDRNVEDAVSLCREMLS 196
S G D S ++I+ YC + + L S
Sbjct: 548 DLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLSKGSKSRQDLLELSGS 607
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL-----------YKNGFVLEAMK---V 242
E IR + T+ +F N + +V T G+ + VL+ K V
Sbjct: 608 EKIRLSSLTFVKMF-PCNTITTSLNVNTIEARGMNSAELNRDLRKLRRSSVLKKFKNRDV 666
Query: 243 FSAIGNHKCVLTIETCNC-----------LIDGLCKIGRLK--------IAWDIFHMLMQ 283
+ N +E C + + GR++ + + H M
Sbjct: 667 RVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMI 726
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
G+ P+ +TY+ +I GFCKE + +AN +L
Sbjct: 727 QRGIAPNTITYSSLIDGFCKENRLDEANQML 757
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G +LL ++ PN++TFN L+ EG++ EA L+K++ PN+IT+
Sbjct: 267 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 326
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-------- 102
NTL N E N ++ C PD+VT T++I G C DG
Sbjct: 327 NTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK 386
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PDV+T ++ D L +GK+E+
Sbjct: 387 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 446
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILIN 176
A + E + + ++ Y T+++G AW KG + +V +Y ++I+
Sbjct: 447 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 506
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G CK ++ +A L R+M +G + TYNTL A
Sbjct: 507 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 194/374 (51%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ +++ P++VT+ +++ GLC G I A L KK+ + +V+ +N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ G+ +PDV T +++I LC G M
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNK-GI--RPDVFTYSSLISCLCNYGRWSDASRLLSDM 319
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 320 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 379
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +Y+ LI G+CK + VE+ + L REM G+ + TY TL
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M V P+ Y +DGL KNG + +AM VF +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ W++F L G++P+V+ YN MI GFC++G ++A+
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK-GVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 312 GLLLDMEETGLEPN 325
LL M+E G PN
Sbjct: 559 SLLKKMKEDGPLPN 572
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 71/279 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------- 99
++L A ++FE M+++ C P+VVT + +I G CK
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 100 -----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
GF M+ G+ P+++T N++ D L K+GK
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNI 173
+ +A + E + + + P+ TYN +++G W KG +V +YN
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+I+G+C+ + E+A SL ++M +G ++ TYNTL A
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 45/252 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
I CF PN+VT+++LIKG C R+ E LF++++ N +T+ TL
Sbjct: 390 ISKDCF-PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
A +F++MV+ V P+++T ++DGLCK+G ++ M PD+ T
Sbjct: 449 CDNAQMVFKQMVS---VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS---- 170
N+M + + K GK+E+ L + + V+PN YNT++ GF KG + + S
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC--RKGSKEEADSLLKK 563
Query: 171 ------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
YN LI +D + E + L +EM S G DA+T + N+
Sbjct: 564 MKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLH 619
Query: 219 DSHVYTTYIDGL 230
D + +++D L
Sbjct: 620 DGRLDKSFLDML 631
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 36/272 (13%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
D++ + +D G M+ P +V N + ++K K E L E M ++
Sbjct: 60 DIIKVDDAVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH 116
Query: 146 NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY+ ++ F S+ G D+ + + L+NGYC + + DAV+L
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
+M+ G + D T+ TL M PD Y T ++GL K
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A+ + + K + N +IDGLCK + A ++F M N G+ PDV T
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE-MDNKGIRPDVFT 295
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y+ +I C G+ A+ LL DM E + PN
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPN 327
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 192/372 (51%), Gaps = 51/372 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ +++ P++VT+ +++ GLC G I A L KK+ + +V+ +N
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259
Query: 63 TLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGF----------MMD 105
T+ + L ++ + + F + K PDV T ++I LC G M++
Sbjct: 260 TI-IDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE 318
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 161 ---------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
SK C +V +YN LI G+CK + VE+ + L REM G+ + TYNTL
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + VPPD Y+ +DGL K G + +A+ VF + K
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T N +I+G+CK G+++ WD+F L G+ P+V+ Y MI GFC++G ++A+ L
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557
Query: 314 LLDMEETGLEPN 325
+M+E G P+
Sbjct: 558 FREMKEDGTLPD 569
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 143/355 (40%), Gaps = 91/355 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 304 GRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A ++FE M+++ C P+VVT +I G CK +G
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G+ + VT N + L + G + A + + M+ V P+ TY+ L+DG + K
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSL-CREMLSEGIRADATTYN 207
D+Y+YNI+I G CK VED L C
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS--------------- 525
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+++ V P+ +YTT I G + G EA +F
Sbjct: 526 ---LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE---------------------- 560
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M+ G PD YN +I ++G + L+ +M G
Sbjct: 561 --------------MKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGF 601
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 41/246 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF PN+VT+N+LIKG C R+ E LF++++ N +T+NTL +A
Sbjct: 391 CF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLCK G ++ M PD+ T N+M
Sbjct: 450 QKIFKKMVSD-GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ + K GK+E+ L + + V PN Y T++ GF G
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D YN LI +D + + L +EM S G DA+T + + N+ D +
Sbjct: 567 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI----NMLHDGRLEK 622
Query: 225 TYIDGL 230
+Y++ L
Sbjct: 623 SYLEML 628
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 33/257 (12%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G M+ P +V N + ++K K + L E M ++ + +YN L++ F
Sbjct: 69 GEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRR 128
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+ G D+ + + L+NGYC + + DAV+L +M+ G + D T+
Sbjct: 129 SQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTF 188
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL M PD Y ++GL K G + A+ + +
Sbjct: 189 NTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEK 248
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
K + N +IDGLCK + A+ +F+ M+ G+ PDV TYN +I C G+
Sbjct: 249 GKIEADVVIYNTIIDGLCKYKHIDDAFALFNK-METKGIRPDVFTYNSLISCLCNYGRWS 307
Query: 309 KANGLLLDMEETGLEPN 325
A+ LL +M E + PN
Sbjct: 308 DASRLLSNMIERKINPN 324
>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Cucumis sativus]
Length = 481
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/376 (34%), Positives = 184/376 (48%), Gaps = 58/376 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
F ++ S P + +FN L+ GL + L+ K+ + P++ T N LA
Sbjct: 74 AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILAN 133
Query: 66 -LVALNLFEEMVNEFGVICK----PDVVTCTNIIDGL---CKDGF----------MMDQG 107
L LN E + I + PD+VT +I GL CK G M QG
Sbjct: 134 CLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQG 193
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------------ 155
M P+V++ + + GK+EE+ L M+ + V PN +N L+D
Sbjct: 194 MIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLS 253
Query: 156 -----GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ SKGC H+ SY ILINGYCK VE+A++L EM G R + TY+TL
Sbjct: 254 SARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLL 313
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + + DS +Y ++DGL KNG + EAM++F+ + ++
Sbjct: 314 TGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFK 373
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
L E+ + LIDGLCK G+++IAW+ F L Q GL P+VVT NIMIHGFC+ Q KAN
Sbjct: 374 LDFESYSRLIDGLCKAGKVEIAWEFFKQLSQE-GLQPNVVTCNIMIHGFCRVEQVDKANI 432
Query: 313 L---LLDMEETGLEPN 325
L + MEE G P+
Sbjct: 433 LFEKMEKMEENGCTPD 448
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + +++ LI GLC G++ A FK+L+ PNV+T N M++
Sbjct: 372 FKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI-----------MIHG 420
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
F C+ + V NI+ K M + G PD++T N + + K+EE LL M
Sbjct: 421 F---CRVEQVDKANIL--FEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475
Query: 139 IQR 141
+R
Sbjct: 476 FKR 478
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/402 (30%), Positives = 188/402 (46%), Gaps = 90/402 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+LG++ P+ +TFN+LI GLC EG+I EA LF ++ +PNVI++ T+
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+A+++F++M CKP+VVT + IID LCKD M+++G+ P
Sbjct: 210 KTGNTSMAVDVFKKMEQNG---CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPP 266
Query: 111 DV-----------------------------------VTLNVMTDNLSKDGKMEEANCLL 135
+V VT ++ D L K+G + EA +
Sbjct: 267 NVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVF 326
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKD 181
E M ++ V P+ TYN LMDG+ KGC +SYNILINGYCK
Sbjct: 327 ETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKS 386
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVY 223
R +++A SL EM + + D TY+TL + + P+ Y
Sbjct: 387 RRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTY 446
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+DG K+G + EA+K+ ++ K I LI+G+ G+L++A ++F L
Sbjct: 447 VILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFG 506
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PD+ TY +MI G KEG +A L ME+ G PN
Sbjct: 507 D-GTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 547
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 118/282 (41%), Gaps = 68/282 (24%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+V +LN++ + L + ++ + +L M + ++P+ T+N L++G K
Sbjct: 127 NVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELF 186
Query: 163 -----------------------------------------GCRHDVYSYNILINGYCKD 181
GC+ +V +Y+ +I+ CKD
Sbjct: 187 NEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKD 246
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
R V DA+ EM+ GI + TYN++ M +V P++ +
Sbjct: 247 RLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTF 306
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T +DGL K G V EA VF + I T N L+DG C + A +F ++++
Sbjct: 307 TILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIR 366
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P +YNI+I+G+CK + +A LL +M L P+
Sbjct: 367 K-GCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPD 407
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 19/178 (10%)
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
H+VYS NILIN C+ +V+ +VS+ +M GI DA T+N L
Sbjct: 126 HNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVEL 185
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M P+ YTT I+GL K G A+ VF + + C + T + +ID LCK
Sbjct: 186 FNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCK 245
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + +++ G+ P+V TYN ++HGFC GQ +A L +M + PN
Sbjct: 246 DRLVNDAMEFLSEMVER-GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 69/265 (26%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
++GR +M PN VTF L+ GLC EG + EA +F+ + +P++ T+N L
Sbjct: 294 MVGRDVM----PNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYC 349
Query: 67 ------VALNLFEEMVNE--------FGVI----CK--------------------PDVV 88
A +FE M+ + + ++ CK PD V
Sbjct: 350 LQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTV 409
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T + ++ GLC+ G M G P++VT ++ D K G ++EA LL+ M
Sbjct: 410 TYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSM 469
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ + PN Y L++G + G R D+ +Y ++I G K+
Sbjct: 470 KEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
++A L R+M +G ++ +YN +
Sbjct: 530 DEAYDLFRKMEDDGFLPNSCSYNVM 554
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 34/223 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
P ++N LI G C R+ EA L ++ +P+ +T++TL L L +E +N
Sbjct: 370 APGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALN 429
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
F +C P++VT ++DG CK G M ++ + P++V ++ + +
Sbjct: 430 LFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMF 489
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY-------------- 169
GK+E A L + P+ TY ++ G +G + Y
Sbjct: 490 IAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGL--LKEGLSDEAYDLFRKMEDDGFLPN 547
Query: 170 --SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SYN++I G+ ++++ A+ L EM+ + + +T+ L
Sbjct: 548 SCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLL 590
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 146 NTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
N C + L + R V + + + K + VSLC +M + + +
Sbjct: 71 NVCVDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYS 130
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
N L M + PD+ + I+GL G + EA+++F+ +
Sbjct: 131 LNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMV 190
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ + +I+GLCK G +A D+F + QN G P+VVTY+ +I CK+
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQN-GCKPNVVTYSTIIDSLCKDRLV 249
Query: 308 QKANGLLLDMEETGLEPN 325
A L +M E G+ PN
Sbjct: 250 NDAMEFLSEMVERGIPPN 267
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L + PN+VT+ L+ G C G + EA +L K + +PN++
Sbjct: 421 LGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVH 480
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ L VA LF ++ FG +PD+ T T +I GL K+G
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKL---FGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFR 537
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M D G P+ + NVM ++ A L++ M+ + + N T+ L+D
Sbjct: 538 KMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 182/375 (48%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F PN VT+ +LI GLC G A RL + + C+PNVIT+
Sbjct: 158 GKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITY 217
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ ALN+F EM+ + G+ P+V T +II GLCK
Sbjct: 218 NTIIDCLFKDRQVNEALNIFSEMIAK-GI--SPNVSTYNSIIHGLCKFSEWKHVATLMNE 274
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+D + P+VV + D L K+G + A+ +++VMIQR V P+ TY LMDG S
Sbjct: 275 MVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSE 334
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC +V SY+ LINGYCK + ++ A+ L EM + + TYNT
Sbjct: 335 MDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD Y +D L K + +AM + AI
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I++ N +IDG+C++G L+ A D+F L + GL PDV TY IMI+G C +G +A
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSL-SSKGLHPDVWTYTIMINGLCLQGLLAEA 513
Query: 311 NGLLLDMEETGLEPN 325
L +M G P+
Sbjct: 514 TKLFREMNTDGCSPD 528
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 36/220 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+ +L+ G C + EA ++F + C PNVI+++TL A+ L
Sbjct: 317 PDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYL 376
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
FEEM V P++VT +I GLC G + D G PD+VT ++ D
Sbjct: 377 FEEMCQRELV---PNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDY 433
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K +++A +L+ + ++ P+ +YN ++DG + SKG D
Sbjct: 434 LCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
V++Y I+ING C + +A L REM ++G D TYN
Sbjct: 494 VWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYN 533
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 49/209 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------AL 66
PN+VT+N+LI GLC GR+ +A LF ++ P+++T+ L A+
Sbjct: 385 LVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAM 444
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
L E G PD+ + +IDG+C+ G + +G+ PDV T
Sbjct: 445 AMLKAIE------GSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYT 498
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+M + L G + EA L M +P+ CTYN + GF
Sbjct: 499 IMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGF------------------- 539
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATT 205
++ A+ L +EML G ADA+T
Sbjct: 540 --LRNNETLSAIQLLQEMLGRGFSADAST 566
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
S G DVY+ I+IN +C V+ S+ ++ G + D T+ TL
Sbjct: 102 SLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIG 161
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M P+ Y T I GL K G A+++ ++ C + T N +I
Sbjct: 162 EALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTII 221
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
D L K ++ A +IF ++ G++P+V TYN +IHG CK + + L+ +M ++ +
Sbjct: 222 DCLFKDRQVNEALNIFSEMIAK-GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKI 280
Query: 323 EPN 325
PN
Sbjct: 281 MPN 283
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 52/363 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
++G+++ + P++VT +SLI G C R+ +A L K+ P+V+ +NT+
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR---P 110
LV A+ LF+ M + GV + D VT +++ GLC G M D MR P
Sbjct: 186 KIGLVNDAVELFDRMERD-GV--RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
+V+T + D K+GK EA L E M +R V+P+ TYN+L++G
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +YN LING+CK + V++ L REM G+ D TYNT+
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 362
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P+ Y+ + GL N V +A+ +F + + L I T N +
Sbjct: 363 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 422
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CKIG ++ AWD+F L GL PDVV+Y MI GFC++ Q K++ L M+E G
Sbjct: 423 IHGMCKIGNVEDAWDLFRSL-SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481
Query: 322 LEP 324
L P
Sbjct: 482 LLP 484
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 42/252 (16%)
Query: 90 CTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
C+ + L G MM G PDVVT++ + + + ++ +A L+ M + P+
Sbjct: 117 CSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI 176
Query: 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YNT++D G CK V DAV L M +G+RADA TYN+L
Sbjct: 177 YNTIID---------------------GSCKIGLVNDAVELFDRMERDGVRADAVTYNSL 215
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + ++ P+ +T ID K G EAMK++ + +C
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRC 274
Query: 252 V-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + T N LI+GLC GR+ A + LM G PDVVTYN +I+GFCK + +
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLD-LMVTKGCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 311 NGLLLDMEETGL 322
L +M + GL
Sbjct: 334 TKLFREMAQRGL 345
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + C P++ T+NSLI GLC GR+ EA ++ + C P+V+T+
Sbjct: 258 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 317
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL +N F CK V +G M +G+ D +T N +
Sbjct: 318 NTL-----------INGF---CKSKRVD-----EGTKLFREMAQRGLVGDTITYNTIIQG 358
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--WWSKGC------------RHD 167
+ G+ + A E+ + D PN TY+ L+ G W + D
Sbjct: 359 YFQAGRPDAAQ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YNI+I+G CK NVEDA L R + +G++ D +Y T+
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 457
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAINNV- 216
+ ++ +++ K +N + +SL M GI D +YN + +A++ V
Sbjct: 69 IVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVG 128
Query: 217 -------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD ++ I+G + V +A+ + S + + N +IDG CKIG
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F M+ G+ D VTYN ++ G C G+ A L+ DM + PN
Sbjct: 189 LVNDAVELFDR-MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 243
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 183 bits (465), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 184/411 (44%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +LG IL + P+ TF +LI+GLC EG+I EA +LF K+ P+V+T
Sbjct: 102 LNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLT 161
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ TL A+ M C+P VV + IID LCKD
Sbjct: 162 YGTLINGLCKVGNTSTAIRFLRSMEQRN---CRPTVVVYSTIIDSLCKDRQLTEALSLFS 218
Query: 102 -----------------------------------FMMDQGMRPDVVTLNVMTDNLSKDG 126
M+ + + PD +T N + D L K+G
Sbjct: 219 DMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEG 278
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
+ +A+ +++VMIQ D+ P+ TYN+LMDG S KGC V SY
Sbjct: 279 MVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYT 338
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LINGYCK + ++ A+ L EM +G+ D TYNTL M +
Sbjct: 339 TLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVY 398
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y D L KN + EAM + I I + ++DG+C+ G L+ A
Sbjct: 399 GQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAA 458
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L + GL PDV TY IMI+G C++G +A+ L +M+E G PN
Sbjct: 459 RDLFSKL-SSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPN 508
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 155/364 (42%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L R+L P++V F+ L+ + L+K+++ F N T N L +
Sbjct: 41 LFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFC 100
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
LN + G I K P T T +I GLC +G M +G +PDV+
Sbjct: 101 HLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVL 160
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------W 159
T + + L K G A L M QR+ P Y+T++D
Sbjct: 161 TYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDM 220
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
+KG + ++Y+ LI+G C + ++A+ L M+ I D T+NTL A+
Sbjct: 221 LAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMV 280
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
+++ PD Y + +DG + + + VF + CV ++ + L
Sbjct: 281 VKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTL 340
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I+G CKI + A +F + Q GL PD VTYN +IHG C G+ + A L +M G
Sbjct: 341 INGYCKIQIMDKAMGLFEEMSQQ-GLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 399
Query: 322 LEPN 325
P+
Sbjct: 400 QIPD 403
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 49/224 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
P+ VT+N+LI GLC GR+ +A LF ++ V+ P+++T+ L A+V
Sbjct: 367 PDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVL 426
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L + E G PD+ + ++DG+C+ G + +G+ PDV T +M
Sbjct: 427 LKVIE------GTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIM 480
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
+ L + G + EA+ L M + +PN CTYN + GF ++ R
Sbjct: 481 INGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLR------------- 527
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
A+ L +EMLS G D +T L +++ D V
Sbjct: 528 --------AIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSV 563
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 57/375 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITF 61
+A L R+L + N T+ +I LC +G ++ ++F+++ N+ C PNVI +
Sbjct: 59 QARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGIC-PNVIVY 117
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
++L A+NLF+EMV++ G+ K +V+T ++I C+ G
Sbjct: 118 SSLINGLCRVGKLREAVNLFDEMVSQ-GI--KANVITYNSLIHASCRFGLWKEATRTFSQ 174
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G+ PDVVT + D+LSK GK++EA + E+MI++ PN TYN+L++G
Sbjct: 175 MVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQ 234
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + DV SYN LINGYC E+A++L R+M E + TTY
Sbjct: 235 MDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTI 294
Query: 209 LFMAI-------------NNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ NN+ P YT +DGL KNG + EA+ VF ++ + K
Sbjct: 295 LLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIK 354
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+I + LI G+ + R + A +IF + GL P++VTYNIMI+G CKEG+ +A
Sbjct: 355 YKPSIRIYSILIGGMFQARRWESAMEIFDEI-PTVGLVPNIVTYNIMINGLCKEGKLLEA 413
Query: 311 NGLLLDMEETGLEPN 325
L + MEE+G E +
Sbjct: 414 ERLFVQMEESGCEQD 428
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 37/209 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ TP++ T+ L+K L GRI A LF + + P++ T+
Sbjct: 268 GKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTY 327
Query: 62 NTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDGF------MMDQ--- 106
L L EE ++ F + KP + + +I G+ + + D+
Sbjct: 328 TVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPT 387
Query: 107 -GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G+ P++VT N+M + L K+GK+ EA L M + GC
Sbjct: 388 VGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEE---------------------SGCE 426
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREM 194
D S+N +I G+ ++ V+ A+ + M
Sbjct: 427 QDEISFNFIIRGFLQENQVQKAMEFLKRM 455
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 52/363 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
++G+++ + P++VT +SLI G C R+ +A L K+ P+V+ +NT+
Sbjct: 67 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 126
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR---P 110
LV A+ LF+ M + GV + D VT +++ GLC G M D MR P
Sbjct: 127 KIGLVNDAVELFDRMERD-GV--RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 183
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
+V+T + D K+GK EA L E M +R V+P+ TYN+L++G
Sbjct: 184 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 243
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +YN LING+CK + V++ L REM G+ D TYNT+
Sbjct: 244 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 303
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P+ Y+ + GL N V +A+ +F + + L I T N +
Sbjct: 304 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 363
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CKIG ++ AWD+F L GL PDVV+Y MI GFC++ Q K++ L M+E G
Sbjct: 364 IHGMCKIGNVEDAWDLFRSL-SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 422
Query: 322 LEP 324
L P
Sbjct: 423 LLP 425
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 42/252 (16%)
Query: 90 CTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
C+ + L G MM G PDVVT++ + + + ++ +A L+ M + P+
Sbjct: 58 CSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI 117
Query: 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YNT++D G CK V DAV L M +G+RADA TYN+L
Sbjct: 118 YNTIID---------------------GSCKIGLVNDAVELFDRMERDGVRADAVTYNSL 156
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + ++ P+ +T ID K G EAMK++ + +C
Sbjct: 157 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRC 215
Query: 252 V-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + T N LI+GLC GR+ A + LM G PDVVTYN +I+GFCK + +
Sbjct: 216 VDPDVFTYNSLINGLCMHGRVDEAKQMLD-LMVTKGCLPDVVTYNTLINGFCKSKRVDEG 274
Query: 311 NGLLLDMEETGL 322
L +M + GL
Sbjct: 275 TKLFREMAQRGL 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + C P++ T+NSLI GLC GR+ EA ++ + C P+V+T+
Sbjct: 199 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 258
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL +N F CK V +G M +G+ D +T N +
Sbjct: 259 NTL-----------INGF---CKSKRVD-----EGTKLFREMAQRGLVGDTITYNTIIQG 299
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--WWSKGC------------RHD 167
+ G+ + A E+ + D PN TY+ L+ G W + D
Sbjct: 300 YFQAGRPDAAQ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 356
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YNI+I+G CK NVEDA L R + +G++ D +Y T+
Sbjct: 357 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 398
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAINNV- 216
+ ++ +++ K +N + +SL M GI D +YN + +A++ V
Sbjct: 10 IVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVG 69
Query: 217 -------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD ++ I+G + V +A+ + S + + N +IDG CKIG
Sbjct: 70 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 129
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F M+ G+ D VTYN ++ G C G+ A L+ DM + PN
Sbjct: 130 LVNDAVELFDR-MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 184
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 190/411 (46%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL PN+ TFN+LI+GLC EG+I E LF K+ PNV+T
Sbjct: 107 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 166
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 167 YGTLINGLCKVGSTSAAIRLLRSM--EQGN-CQPDVVVYTSIIDSLCKDRQVTQAFNLFS 223
Query: 102 FMMDQGMRPDVVTLNVM-----------------------------------TDNLSKDG 126
M+ QG+ P + T N + D L K+G
Sbjct: 224 EMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 283
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
K+ EA+ ++++MI+R V PN TYN LMDG S KG DV SY+
Sbjct: 284 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 343
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
LINGYCK + +E A+ L EM + + + TY+TL + +V
Sbjct: 344 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 403
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y +D L KN + EA+ + AI I+ +IDG+C+ G L+ A
Sbjct: 404 GQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA 463
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L + GL P+V TY IMI+G C++G +A+ L +M+ G PN
Sbjct: 464 RDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 513
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 146/348 (41%), Gaps = 58/348 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L P++ F L+ + L +++ F PN+ T N L +N F
Sbjct: 49 RMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNIL----INSF 104
Query: 73 ---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+ + F V+ K ++ G +P++ T N + L +GK+
Sbjct: 105 CHLQRLGFAFSVLAK------------------ILKLGHQPNIATFNTLIRGLCVEGKIG 146
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
E L + MI PN TY TL++G + C+ DV Y +I
Sbjct: 147 EVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 206
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VP 217
+ CKDR V A +L EM+ +GI TYN+L A+ N +
Sbjct: 207 DSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIM 266
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ +++T +D L K G V+EA V + + T N L+DG C + A +
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M G PDVV+Y+ +I+G+CK + +KA L +M L PN
Sbjct: 327 FDT-MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPN 373
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 37/205 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
PN VT+++L+ GLC GR+ +A LF ++ P+ +++ L L +E +
Sbjct: 372 PNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIAL 431
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSK 124
I PD+ T +IDG+C+ G + +G+ P+V T +M + L +
Sbjct: 432 LKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQ 491
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G + EA+ L M ++ +PN CTYN + GF ++ R
Sbjct: 492 QGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLR------------------- 532
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
+ L +EML+ G AD +T L
Sbjct: 533 --GIQLLQEMLARGFSADVSTSTVL 555
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 190/411 (46%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL PN+ TFN+LI+GLC EG+I E LF K+ PNV+T
Sbjct: 116 LQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVT 175
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 176 YGTLINGLCKVGSTSAAIRLLRSM--EQGN-CQPDVVVYTSIIDSLCKDRQVTQAFNLFS 232
Query: 102 FMMDQGMRPDVVTLNVM-----------------------------------TDNLSKDG 126
M+ QG+ P + T N + D L K+G
Sbjct: 233 EMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEG 292
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
K+ EA+ ++++MI+R V PN TYN LMDG S KG DV SY+
Sbjct: 293 KVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYS 352
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
LINGYCK + +E A+ L EM + + + TY+TL + +V
Sbjct: 353 TLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTR 412
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y +D L KN + EA+ + AI I+ +IDG+C+ G L+ A
Sbjct: 413 GQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA 472
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L + GL P+V TY IMI+G C++G +A+ L +M+ G PN
Sbjct: 473 RDLFSNL-SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPN 522
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 116/286 (40%), Gaps = 68/286 (23%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ P++ TLN++ ++ ++ A +L +++ PN T+NTL+ G K
Sbjct: 98 GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEV 157
Query: 163 ---------------------------------------------GCRHDVYSYNILING 177
C+ DV Y +I+
Sbjct: 158 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 217
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPD 219
CKDR V A +L EM+ +GI TYN+L A+ N + P+
Sbjct: 218 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPN 277
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+++T +D L K G V+EA V + + T N L+DG C + A +F
Sbjct: 278 VVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFD 337
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G PDVV+Y+ +I+G+CK + +KA L +M L PN
Sbjct: 338 T-MVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPN 382
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 72/242 (29%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F P++V++++LI G C RI +A LF+++ PN +T++TL A+
Sbjct: 344 FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAI 403
Query: 70 NLFEEMVNEFGV------------ICK--------------------PDVVTCTNIIDGL 97
LF EMV + +CK PD+ T +IDG+
Sbjct: 404 ALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGM 463
Query: 98 CKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C+ G + +G+ P+V T +M + L + G + EA+ L M ++ +PN
Sbjct: 464 CRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNG 523
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
CTYN + GF ++ R + L +EML+ G AD +T
Sbjct: 524 CTYNLITRGFLRNNETLR---------------------GIQLLQEMLARGFSADVSTST 562
Query: 208 TL 209
L
Sbjct: 563 VL 564
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 154 MDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
MD F G ++Y+ NILIN +C + + A S+ ++L G + + T+NTL +
Sbjct: 94 MDSF-----GIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGL 148
Query: 214 ------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
P+ Y T I+GL K G A+++ ++ C +
Sbjct: 149 CVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDV 208
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ID LCK ++ A+++F ++ G++P + TYN +IH C + + LL
Sbjct: 209 VVYTSIIDSLCKDRQVTQAFNLFSEMIHQ-GISPSIFTYNSLIHALCNLCEWKHVTALLN 267
Query: 316 DMEETGLEPN 325
+M + + PN
Sbjct: 268 EMVNSKIMPN 277
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 180/356 (50%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+ ++I GLC G AA L KK+ C PNV+T++T+ AL++
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGMR-----PDVVTLNVMTDN 121
F M + G+ PD+ T ++I GLC K+ + MR PD+VT NV+ D
Sbjct: 261 FSYMKVK-GI--SPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
+ K+GK+ EA +L+ M + V P+ TY++LM G++ S KGC+ D
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPD 377
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V+SYNILINGYCK + +++A L EM+ +G+ + +YNTL
Sbjct: 378 VFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFK 437
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M N P+ Y+ +DG K G+ +A ++F A+ + + N LID +CK G
Sbjct: 438 NMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSG 497
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ A +F L GL P+ Y +I+G CKEG +A +MEE G P+
Sbjct: 498 NLRDARKLFSELFVK-GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 552
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 133/283 (46%), Gaps = 46/283 (16%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----------QGMRPDVVTLN 116
AL F M++ + C ++ T ++ + K G D G+ P++ TL+
Sbjct: 81 ALASFNHMLHRKPLPC---IIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------GFAWW--------SK 162
++ + S +++ A +L +I+ + P T+ TL++ FA ++
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GCR DVY+Y +ING CK A L ++M G + + TY+T+
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTI------------- 244
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
ID K+ V EA+ +FS + I T N LI GLC + K A + + M
Sbjct: 245 ----IDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE-M 299
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + PD+VT+N+++ CKEG+ +A G+L M E G+EP+
Sbjct: 300 RSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ ++N LI G C RI EA +LF ++ PN +++NTL L L E N
Sbjct: 376 PDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNL 435
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F + P++ T + ++DG CK G+ M +P++V N++ D + K
Sbjct: 436 FKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCK 495
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
G + +A L + + + PN Y T+++G GC D S
Sbjct: 496 SGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEIS 555
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
YN++I G+ ++ AV L EM +G AD T
Sbjct: 556 YNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 110/257 (42%), Gaps = 71/257 (27%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VTFN L+ +C EG++ EA + K + +P+V+T+++L + A L
Sbjct: 306 PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL 365
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+ M+ + CKPDV + +I+G CK M+ QG+ P+ V+ N +
Sbjct: 366 FDAMITKG---CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHG 422
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-----HDVYS--- 170
L + G + EA L + M PN TY+ L+DGF ++ K R YS
Sbjct: 423 LCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPN 482
Query: 171 ---YNILI-----------------------------------NGYCKDRNVEDAVSLCR 192
YNILI NG CK+ +++A+ R
Sbjct: 483 LVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFR 542
Query: 193 EMLSEGIRADATTYNTL 209
M +G D +YN +
Sbjct: 543 NMEEDGCPPDEISYNVI 559
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 179 CKDRNVEDAVSLCREMLSE-------------------GIRADATTYNTLFMAINNVPPD 219
C RN++DA++ ML G D T M + + P+
Sbjct: 73 CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ + I+ V A V + I TI T LI+ LCK+G+ A ++F
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G PDV TY +I+G CK G+ A GLL MEE G +PN
Sbjct: 193 DMVAR-GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPN 237
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 178/364 (48%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LG+++ F P++VTF SL+ G C RI +A LF ++ PNV+T+ TL
Sbjct: 140 FLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLC 199
Query: 68 ---ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
LN E+ N+ G +P+VVT ++ GLC+ G MM + + P+V+
Sbjct: 200 KNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 259
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW------------- 160
T + D K GK+ EA L VMIQ V P+ TY +L++G +
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Query: 161 -SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
GC + Y LI+G+CK + VED + + EM +G+ A+ TY L
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRP 379
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M+ PPD Y +DGL NG V +A+ +F + + + I T +
Sbjct: 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTII 439
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CK+G+++ A+D+F L G+ P+V+TY MI GFC+ G +A+ L M+E G
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSK-GMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Query: 322 LEPN 325
PN
Sbjct: 499 FLPN 502
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
V ++LFE+M G+ P + TC ++ +C G MM G PD+VT
Sbjct: 101 VVISLFEQM-QILGI--PPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFT 157
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+ + ++E+A L + ++ PN TY T LI
Sbjct: 158 SLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTT---------------------LIR 196
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
CK+R++ AV L +M + G R + TYN L M + P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +T ID K G ++EA ++++ + + T LI+GLC G L A +F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ LM+ G P+ V Y +IHGFCK + + + +M + G+ N
Sbjct: 317 Y-LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 37/227 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
I MS + P++ T+ SLI GLC G + EA ++F + C PN + + TL
Sbjct: 285 IQMSVY-PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR 343
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
+ +F EM + GV+ + +T T +I G C G M + PD+ T
Sbjct: 344 VEDGMKIFYEMSQK-GVVA--NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
NV+ D L +GK+E+A + E M +R+++ N TY ++ G + +
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF 460
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKG + +V +Y +I+G+C+ + +A SL ++M +G + + Y
Sbjct: 461 SKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 47/276 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL ++ PN++TF +LI G+++EA L+ + P+V T
Sbjct: 236 IGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFT 295
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MM 104
+ +L L L +E F ++ C P+ V T +I G CK DG M
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
+G+ + +T V+ G+ + A + M R P+ TYN L+DG
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVE 415
Query: 157 -----FAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F + K ++ +Y I+I G CK VEDA L + S+G++ + T
Sbjct: 416 KALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT----- 470
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I G + G + EA +F +
Sbjct: 471 ------------YTTMISGFCRRGLIHEADSLFKKM 494
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 33/248 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--- 166
P ++ + ++K + + L E M + P CT N +M S+ CR
Sbjct: 81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140
Query: 167 -----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
D+ ++ L+NGYC +EDA++L ++L G + + TY TL
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M N P+ Y + GL + G +A + + + + T
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LID K+G+L A +++++++Q + PDV TY +I+G C G +A + M
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQM-SVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Query: 318 EETGLEPN 325
E G PN
Sbjct: 320 ERNGCYPN 327
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 176/339 (51%), Gaps = 56/339 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V ++SL+ GLC GR+ EA FK++ +V T+N+L L L++E
Sbjct: 179 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKE---- 234
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
V N+ M+D+G PD T ++ D L K+GK+ EA +LE+M
Sbjct: 235 --------VTWFLNL---------MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 277
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ P+ TYNTLM+G + +G + +V+SYNILINGYCKD+ +
Sbjct: 278 HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 337
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPDSHVY------------TTY--- 226
++A L EM +G++ TYNTL A+ V ++ +TY
Sbjct: 338 DEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVL 397
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL KNG + EA+ +F +I + IE + L+DG+C+ G+L+ AW F + +N G
Sbjct: 398 LDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKN-G 456
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD + YNI+I+G C +G +A LL MEE G P+
Sbjct: 457 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 495
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 55/323 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+P+ TF LI GLC EG++ EA ++ + ++ +P+++T+NTL +N
Sbjct: 247 FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTL----MN-------- 294
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G+ + T + + L D+G++ +V + N++ + KD K++EA L E M
Sbjct: 295 -GLCLVGQLEDATKLFESLA------DRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEM 347
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+ + P+T TYNTL+ + G + +Y +L++G CK+ ++
Sbjct: 348 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHL 407
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNV--PPDSHVYTTYIDGLYKNGFVLEAMKV 242
E+A+ LF +I P+ V++ +DG+ + G + EA K
Sbjct: 408 EEAID-------------------LFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQ 448
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F I + N LI+GLC G L A + M+ G PD +T+N++I
Sbjct: 449 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQNLL 507
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
KE + +A LL +M P+
Sbjct: 508 KENEIHEAIQLLEEMRNRNFSPD 530
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 82/340 (24%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEE 74
L F P+ VT +L+KG+ E I P+ A+ LF+E
Sbjct: 69 LKRGFEPDAVTVTTLVKGVWMENGI----------------PD----------AVQLFDE 102
Query: 75 MVNE--FGVICKPDVVTCTNIIDGLCKD-----GFMMDQGMRP----DVVTLNVMTDNLS 123
M + FG D T +I+GLCK + + M+ DV T ++ D+L
Sbjct: 103 MTEKGLFG-----DAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLC 157
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
KDG EA + MI + P+ Y++LMDG C+
Sbjct: 158 KDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL---------------------CRFGR 196
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTT 225
+++A+ +EM GI AD TYN+L ++ PD+ +T
Sbjct: 197 LKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 256
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL K G V EA ++ + + I T N L++GLC +G+L+ A +F L +
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLA-DR 315
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +V +YNI+I+G+CK+ + +A L +M GL+P+
Sbjct: 316 GIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPS 355
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 175/339 (51%), Gaps = 56/339 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V ++SL+ GLC GR+ EA FK++ +V T+N+L L L++E
Sbjct: 1118 PDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKE---- 1173
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
V N+ M+D+G PD T ++ D L K+GK+ EA +LE+M
Sbjct: 1174 --------VTWFLNL---------MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 1216
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ P+ TYNTLM+G + +G + +V+SYNILINGYCKD+ +
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 1276
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPDSHVY------------TTY--- 226
++A EM +G++ TYNTL A+ V ++ +TY
Sbjct: 1277 DEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVL 1336
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL KNG + EAM +F +I + IE + L+DG+C+ G+L+ AW F + +N G
Sbjct: 1337 LDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKN-G 1395
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD + YNI+I+G C +G +A LL MEE G P+
Sbjct: 1396 LEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 1434
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 167/411 (40%), Gaps = 117/411 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN--------------VFCC- 54
L R L S P TFN L+ + G +++K+N + CC
Sbjct: 933 LFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCC 992
Query: 55 --------------------DPNVITFNTLALV---------ALNLFEEMVNE------- 78
+P+ +T TL A+ LF+EM +
Sbjct: 993 SLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAK 1052
Query: 79 -FGVI-----------------------CKPDVVTCTNIIDGLCKDGF----------MM 104
+G++ CK DV T IID LCKDG M+
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMI 1112
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
G+ PDVV + + D L + G+++EA + M R ++ + TYN+L+ G +
Sbjct: 1113 GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWK 1172
Query: 159 ---WW-----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
W+ +G D +++ ILI+G CK+ V +A + M +G D TYNTL
Sbjct: 1173 EVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL- 1231
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
++GL G + +A K+F ++ + L + + N LI+G CK +
Sbjct: 1232 ----------------MNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQK 1275
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ A+ F M+ GL P VTYN +I C+ G+ + A L ++M+ G
Sbjct: 1276 IDEAFRFFEE-MRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 1325
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 144/338 (42%), Gaps = 78/338 (23%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------A 65
L F P+ VT +L+KG+ E I +A +LF ++ + T+ L
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKT 1067
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
+A+ L E+M CK DV T IID LCK D
Sbjct: 1068 GLAIKLHEKMKGN----CKGDVFTYGMIIDALCK-------------------------D 1098
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G EA + MI + P+ Y++LMDG C+ ++
Sbjct: 1099 GMTTEALDMFSEMIGAGILPDVVVYSSLMDGL---------------------CRFGRLK 1137
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYI 227
+A+ +EM GI AD TYN+L ++ PD+ +T I
Sbjct: 1138 EALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL K G V EA ++ + + I T N L++GLC +G+L+ A +F L + G+
Sbjct: 1198 DGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLA-DRGI 1256
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V +YNI+I+G+CK+ + +A +M GL+P+
Sbjct: 1257 KLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPS 1294
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 51/321 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+P+ TF LI GLC EG++ EA ++ + + +P+++T+NTL +N
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTL----MN-------- 1233
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G+ + T + + L D+G++ +V + N++ + KD K++EA E M
Sbjct: 1234 -GLCLVGQLEDATKLFESLA------DRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEM 1286
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+ + P+T TYNTL+ + G + +Y +L++G CK+ ++
Sbjct: 1287 RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHL 1346
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E+A+ L + + + + ++ L +DG+ + G + EA K F
Sbjct: 1347 EEAMDLFQSIKKTEHKPNIEVFSIL-----------------LDGMCRAGKLEEAWKQFD 1389
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
I + N LI+GLC G L A + M+ G PD +T+N++I KE
Sbjct: 1390 EISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ-MEEKGCLPDSITFNVIIQNLLKE 1448
Query: 305 GQHQKANGLLLDMEETGLEPN 325
+ +A LL +M P+
Sbjct: 1449 NEIHEAIQLLEEMRNRNFSPD 1469
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 100/236 (42%), Gaps = 35/236 (14%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
D G++PD+ TLN++ + + ++R P+ T TL+ G W
Sbjct: 974 DVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKG-VWMENGI 1032
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG D +Y ILING CK R A+ L +M
Sbjct: 1033 PDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM--------------- 1077
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
N D Y ID L K+G EA+ +FS + + + + L+DGLC+ G
Sbjct: 1078 ---KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFG 1134
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RLK A + F M+ G++ DV TYN +IHG + G ++ L M + G P+
Sbjct: 1135 RLKEALEFFKE-MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 1189
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 181/376 (48%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + F PN VT+ ++ +C G+ A L +K+ + + +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 62 NTLALV---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ + A NLF EM + F K D++T +I G C G
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGF----KADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ + + P+VVT +V+ D+ K+GK+ EA+ LL+ M+QR + PNT TYN+L+DGF
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKGC D+ ++NILINGYCK ++D + L REM G+ A+ TYN
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M V PD Y +DGL NG + +A+++F I
Sbjct: 443 TLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKS 502
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K L I +I G+C ++ AWD+F L G+ D YNIMI C++ K
Sbjct: 503 KMELDIGIYMIIIHGMCNASKVDDAWDLFCSL-PLKGVKLDARAYNIMISELCRKDSLSK 561
Query: 310 ANGLLLDMEETGLEPN 325
A+ L M E G P+
Sbjct: 562 ADILFRKMTEEGHAPD 577
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 124/299 (41%), Gaps = 66/299 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL ++ +PN+VTF+ LI EG++ EA +L K++ PN IT+
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MMD 105
N+L N EE + ++ C PD++T +I+G CK DG M
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL 431
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G+ + VT N + + GK+E A L + M+ R V P+ +Y L+DG
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 158 -----------------------------------AW------WSKGCRHDVYSYNILIN 176
AW KG + D +YNI+I+
Sbjct: 492 ALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS 551
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
C+ ++ A L R+M EG D TYN L A + D+ I+ + +GF
Sbjct: 552 ELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA-HLGDDDATTAAELIEEMKSSGF 609
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 72/338 (21%)
Query: 51 VFCCDPNVITFNTLALV----------------ALNLFEEMVNE------------FGVI 82
+FCC+ TF+ L A++LF +M+ F I
Sbjct: 39 LFCCERGFSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAI 98
Query: 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
K ++ LCK M +G+ + TL++M + + K+ A + +++
Sbjct: 99 AKTKQY---ELVLALCKQ--MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLG 153
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
P+T +NTL++G + G + + + N L+NG C + V DAV
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 213
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
L M+ G + + TY + M N+ D+ Y+ IDGL
Sbjct: 214 VLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGL 287
K+G + A +F+ + I T N LI G C GR WD L+++ +
Sbjct: 274 CKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR----WDDGAKLLRDMIKRKI 329
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P+VVT++++I F KEG+ ++A+ LL +M + G+ PN
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 71/272 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN +T+NSLI G C E R+ EA ++ + CDP+++TF
Sbjct: 347 GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L L LF EM + GVI + VT ++ G C+ G
Sbjct: 407 NILINGYCKANRIDDGLELFREM-SLRGVIA--NTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + +RPD+V+ ++ D L +G++E+A + + + + + Y ++ G
Sbjct: 464 MVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
Query: 158 ---AW---------------------WSKGCRHDVYS--------------------YNI 173
AW S+ CR D S YNI
Sbjct: 524 VDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNI 583
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + D + A L EM S G AD +T
Sbjct: 584 LIRAHLGDDDATTAAELIEEMKSSGFPADVST 615
>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 202/408 (49%), Gaps = 84/408 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------ 42
MG+ + GF +L +IL + P+ VT N+LIKGLC +G++ +A
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166
Query: 43 -----------------ARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVIC 83
+L +K++ PNV ++T+ AL L E F +
Sbjct: 167 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMT 226
Query: 84 ----KPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
DVVT + +I G C +G + + + + P+V T N++ D L K+GK++
Sbjct: 227 VKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVK 286
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH------------DVYSYNILI 175
EA +L VM++ V P+ TY+TLMDG+ + K +H DV++Y ILI
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NG+CK++ V++A++L +EM + + TY++L M P
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQP 406
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
D Y++ IDGL KNG + A+ +F+ + + + I T L+DGLCK GRLK A ++
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEV 466
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F L+ G +V TYN+MI+G CK+G ++A +L ME+ G PN
Sbjct: 467 FQDLL-TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 165/400 (41%), Gaps = 92/400 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L TP ++ FN ++ A L +L + P++IT N L +N F
Sbjct: 49 RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNIL----INCF 104
Query: 73 ---EEMVNEFGVICK-------PDVVTCTNIIDGLC----------------KDGFMMDQ 106
++ F V+ K PD VT +I GLC GF ++Q
Sbjct: 105 CHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 164
Query: 107 G-----------------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+P+V + + D L K + EA L
Sbjct: 165 VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 224
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRN 183
M + ++ + TY+TL+ GF K +VY+YNIL++ CK+
Sbjct: 225 MTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V++A S+ ML ++ D TY+TL M++ V PD H YT
Sbjct: 285 VKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 344
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+G KN V EA+ +F + V I T + LIDGLCK GR+ WD+ M++
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MRDR 403
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G DV+TY+ +I G CK G +A L M++ + PN
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 71/280 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT- 60
G+ LL +++ PN+ T+N L+ LC EG++ EA + + C P+VIT
Sbjct: 248 GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITY 307
Query: 61 -------------------FNTLALV------------------------ALNLFEEMVN 77
FN ++L+ ALNLF+EM
Sbjct: 308 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ 367
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
+ V P +VT +++IDGLCK G M D+G DV+T + + D L K+G
Sbjct: 368 KNMV---PGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGH 424
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNI 173
++ A L M +++ PN T+ L+DG +KG +VY+YN+
Sbjct: 425 LDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNV 484
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ING+CK +E+A+++ +M G +A T+ T+ +A+
Sbjct: 485 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIAL 524
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 186/375 (49%), Gaps = 56/375 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L+ +++ + P+ VTF +L+ GL + EA L +++ V C P+++T+
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+ +ALNL +M E G I + DVV IIDGLCK D F M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKM--EKGKI-EADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+G++PDV T N + L G+ +A+ LL M+++++NP+ +N L+D F
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL 336
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SK C DV +YN LI G+CK + VE+ + + REM G+ + TY T
Sbjct: 337 VEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG V A+ VF +
Sbjct: 397 LIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I T +I+ LCK G+++ WD+F L G+ P+VVTY M+ GFC++G ++A
Sbjct: 457 MKLDIVTYTTMIEALCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEEA 515
Query: 311 NGLLLDMEETGLEPN 325
+ L ++M+E G PN
Sbjct: 516 DALFVEMKEDGPLPN 530
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 37/245 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVIT 60
GR S LL +L P++V FN+LI EG+++EA +L+ ++ C P+V+
Sbjct: 299 GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGL-----CKDG----- 101
+NTL + +F EM ++ G++ + VT T +I G C +
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREM-SQRGLV--GNTVTYTTLIHGFFQARDCDNAQMVFK 415
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ G+ PD++T N++ D L +G +E A + E M +RD+ + TY T+++
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAG 475
Query: 159 ----WWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W KG + +V +Y +++G+C+ E+A +L EM +G ++ TYN
Sbjct: 476 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYN 535
Query: 208 TLFMA 212
TL A
Sbjct: 536 TLIRA 540
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 53/286 (18%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNV 117
A+ LF +MV P +V + ++ + K + F M + G+ ++ T ++
Sbjct: 59 AIGLFGDMVKSRPF---PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + ++ A +L M++ P+ T N+L+ NG
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLL---------------------NG 154
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
+C + +AV+L +M+ G + D T+ TL M + PD
Sbjct: 155 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 214
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y I+GL K G A+ + + + K + N +IDGLCK + A+D+F+
Sbjct: 215 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFN 274
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ PDV TYN +I C G+ A+ LL DM E + P+
Sbjct: 275 K-METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD 319
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 107/267 (40%), Gaps = 83/267 (31%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN--------------------VFCCD-- 55
CF P++V +N+LIKG C R+ E +F++++ CD
Sbjct: 352 CF-PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 410
Query: 56 -------------PNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNI 93
P+++T+N L AL +FE M K D+VT T +
Sbjct: 411 QMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR---DMKLDIVTYTTM 467
Query: 94 IDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I+ LCK G + D +G++P+VVT M + G EEA+ L M +
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527
Query: 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
PN+ TYNT LI +D + + L +EM S G DA
Sbjct: 528 LPNSGTYNT---------------------LIRARLRDGDEAASAELIKEMRSCGFAGDA 566
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGL 230
+T F + N+ D + +++D L
Sbjct: 567 ST----FGLVTNMLHDGRLDKSFLDML 589
>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 794
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 197/408 (48%), Gaps = 84/408 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------ 42
MG+ + GF +L +IL + P+ VT N+LIKGLC +G++ +A
Sbjct: 355 MGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 414
Query: 43 -----------------ARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVIC 83
+L +K++ PNV ++T+ AL L E F +
Sbjct: 415 YATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMT 474
Query: 84 ----KPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
DVVT + +I G C G + + + + PDV T ++ D L K+GK++
Sbjct: 475 VKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVK 534
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH------------DVYSYNILI 175
EA +L VM++ V P+ TYNTLM+G+ + K +H DV++Y ILI
Sbjct: 535 EAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 594
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NG+CK + V++A++L +EM + + D TY++L M P
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
D Y + IDGL KNG + +A+ +F+ + + T L+DGLCK GRLK A ++
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEV 714
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F L+ G DV YN+MI+G CK+G ++A +L MEE G PN
Sbjct: 715 FQDLLTK-GYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPN 761
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 164/360 (45%), Gaps = 48/360 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
++L F N V++ +LI G+C G A + +K++ PNV +NT+ AL
Sbjct: 88 KLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQ 147
Query: 71 LFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
L E F + +VVT + +I G C G M+ + + P+V T N
Sbjct: 148 LVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYN 207
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH-------- 166
++ D L K+GK++EA +L VM++ V N TY+TLMDG+ + K +H
Sbjct: 208 ILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 267
Query: 167 ----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR------------ADATTYNTLF 210
DV+SYNI+ING+CK + V+ A++L +EM+ A Y+T
Sbjct: 268 GVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAV 327
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ + + PD I+ G + V + I + T N LI GL
Sbjct: 328 SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G++K A FH + G + V+Y +I+G CK G + A LL ++ +PN
Sbjct: 388 CLKGQVKKALH-FHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPN 446
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 175/447 (39%), Gaps = 128/447 (28%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL +++ PN+ T+N L+ LC EG++ EA + + C NVIT
Sbjct: 181 VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVIT 240
Query: 61 FNTLA----LV----------------------------------------ALNLFEEMV 76
++TL LV ALNLF+EM+
Sbjct: 241 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI 300
Query: 77 -NEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKD 125
+ F P ++ I+D K + +G++PD+ TLN++ +
Sbjct: 301 LSRF-----PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHM 355
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G++ +L +++R P+T T NTL+ G ++G + + SY
Sbjct: 356 GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSY 415
Query: 172 NILINGYCKDRNVEDAVSLCR-----------------------------------EMLS 196
LING CK + A+ L R EM
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTV 475
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+GI AD TY+TL M + + PD YT +D L K G V E
Sbjct: 476 KGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKE 535
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A V + + + T N L++G + +K A +F+ M G+TPDV TY I+I
Sbjct: 536 AKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNA-MSLMGVTPDVHTYTILI 594
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+GFCK +A L +M + + P+
Sbjct: 595 NGFCKSKMVDEALNLFKEMHQKNMVPD 621
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L +L +C P++ T+N+L+ G + +A +F +++ P+V T+
Sbjct: 531 GKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTY 590
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L +V ALNLF+EM + V PD VT ++++DGLCK G
Sbjct: 591 TILINGFCKSKMVDEALNLFKEMHQKNMV---PDTVTYSSLVDGLCKSGRISYVWDLIDE 647
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M D+G DV+T N + D L K+G +++A L M + + PNT T+ L+DG
Sbjct: 648 MRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGR 707
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG DVY YN++I G+CK +E+A+++ +M G +A T++
Sbjct: 708 LKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDI 767
Query: 209 LFMAI 213
+ A+
Sbjct: 768 IINAL 772
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 167/370 (45%), Gaps = 52/370 (14%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
S + L + + + N+VT+++LI G C G++ EA L + + +PNV T+N L
Sbjct: 150 SEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNIL 209
Query: 65 --ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGF--MMDQGM 108
AL +E + V+ K +V+T + ++DG + F M G+
Sbjct: 210 VDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGV 269
Query: 109 RPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------ 161
PDV + N+M + K ++++A N E+++ R P +N ++D FA
Sbjct: 270 TPDVHSYNIMINGFCKIKRVDKALNLFKEMILSR--FPPIIQFNKILDSFAKMKHYSTAV 327
Query: 162 --------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
KG + D+++ NILIN +C + S+ ++L G T NTL +
Sbjct: 328 SLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGL 387
Query: 214 ---NNVPPDSHV---------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
V H Y T I+G+ K G A+K+ I +
Sbjct: 388 CLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNV 447
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
E + +ID LCK + A+ +F M G++ DVVTY+ +I+GFC G+ ++A GLL
Sbjct: 448 EMYSTIIDALCKYQLVSEAYGLFSE-MTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLN 506
Query: 316 DMEETGLEPN 325
+M + P+
Sbjct: 507 EMVLKTINPD 516
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 83/352 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL +++ P++ T+ L+ L EG++ EA + + C P+V T
Sbjct: 495 VGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFT 554
Query: 61 FNTLALVALNLFE-----EMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MM 104
+NTL L ++E + N ++ PDV T T +I+G CK M
Sbjct: 555 YNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMH 614
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+ M PD VT + + D L K G++ L++ M R + TYN+L+DG
Sbjct: 615 QKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLD 674
Query: 158 ---AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
A ++K G R + +++ IL++G CK ++DA + +++L++G D
Sbjct: 675 KAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDV------- 727
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
++Y I G K G + EA+ + S + + C+
Sbjct: 728 ----------YIYNVMIYGHCKQGLLEEALTMLSKMEENGCI------------------ 759
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P+ VT++I+I+ K+ ++ KA LL M GL
Sbjct: 760 ------------------PNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 175/339 (51%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P +VT+NSLI G+C G+ +A+ LFK++ + P+V+TF+ L L AL+
Sbjct: 276 SPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALS 335
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+F +M+ + +PD+VT +++I G+CK M+ + +RPDVVT ++ D
Sbjct: 336 VFGKMIQ---IAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVD 392
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRH 166
K G + EA ++ +MI+R + PN TYN+LMDG+ S KGC
Sbjct: 393 VFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAP 452
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV SYNILI GYCK +++A L EM +G+ P+S +TT
Sbjct: 453 DVLSYNILIKGYCKSERIDEAKQLFDEMSHKGL-----------------TPNSITHTTL 495
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL + G A ++F +G+H C + T + L+ G CK G L A +F L ++
Sbjct: 496 ISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ- 554
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L P+ V I++ G CK G+ + A L + L+P+
Sbjct: 555 LKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQPD 593
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 183/405 (45%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR---------------------- 44
GF +LG+I F P+++TFN+LI GLC EGRI+EA
Sbjct: 158 GFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVN 217
Query: 45 -------------LFKKLNVFCCDPNVITF---------NTLALVALNLFEEMVNEFGVI 82
KK+ C+P V+++ N L A++LF M G+
Sbjct: 218 GLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHM-RSIGI- 275
Query: 83 CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P VVT ++I G+C G M++ M+PDVVT +++ D L K+G + EA
Sbjct: 276 -SPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEAL 334
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVYSYNILINGY 178
+ MIQ + P+ TY++L+ G + W S+ R DV +++I ++ +
Sbjct: 335 SVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVF 394
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDS 220
CK V +A S+ M+ G+R + TYN+L M PD
Sbjct: 395 CKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDV 454
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y I G K+ + EA ++F + + T LI GLC+ GR A ++F
Sbjct: 455 LSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKK 514
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD++TY+ ++ GFCK G +A L ++++ L+PN
Sbjct: 515 -MGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPN 558
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G VY+ ILIN C V S+ ++ G + T+NTL
Sbjct: 134 GVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEA 193
Query: 210 -----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
++ P + +T ++GL K G A+ + C + + + +ID
Sbjct: 194 MEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDS 253
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK + A D+F+ M++ G++P VVTYN +I+G C GQ ++A+ L +M E ++P
Sbjct: 254 LCKNRLVNEAVDLFYH-MRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKP 312
Query: 325 N 325
+
Sbjct: 313 D 313
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 187/411 (45%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R GF +L +I+ +VTFN+LI GLC G+ +A LF + P+V T
Sbjct: 170 LQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHT 229
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ T+ + A LF +M E G C+PDVVT + IID LCKD
Sbjct: 230 YTTIINGLCKIGETVAAAGLFRKM-GEAG--CQPDVVTYSTIIDSLCKDRRVNEALDIFS 286
Query: 102 FMMDQGMRPDVVTLNVMTDNLS-----------------------------------KDG 126
+M +G+ P++ T N + L K+G
Sbjct: 287 YMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEG 346
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
+ EA +L+ M + V PN TY++LM+G++ + KGC+ DV+SYN
Sbjct: 347 NVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYN 406
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
ILINGYCK + + +A L EM+ +G+ D +YNTL M N
Sbjct: 407 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 466
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y+ +DG K G++ +A ++F A+ + + N LID +CK LK A
Sbjct: 467 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEA 526
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L GL P+V Y +I+G CKEG +A +MEE G PN
Sbjct: 527 RKLFSELFVQ-GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 150/335 (44%), Gaps = 89/335 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF+ LI C EG + EA + K + +PNV+T+++L + A L
Sbjct: 330 PNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKL 389
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+ M+ + CKPDV + +I+G CK M+ QG+ PD+V+ N + D
Sbjct: 390 FDVMITKG---CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDG 446
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + G++ EA+ L + M+ P+ CTY+ L+DGF A S + +
Sbjct: 447 LCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPN 506
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ YNILI+ CK RN+++A L E+ +G++ P+ +YTT I
Sbjct: 507 MVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ-----------------PNVQIYTTII 549
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K G + EA++ F M+ G
Sbjct: 550 NGLCKEGLLDEALEAFRN------------------------------------MEEDGC 573
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P+ +YN++I GF + +A L+ +M E G
Sbjct: 574 PPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGF 608
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 119/255 (46%), Gaps = 33/255 (12%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ-RDVN 144
D + NI D L M+ + RP ++ N + + K +A L ++ ++
Sbjct: 95 DASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLS 154
Query: 145 PNTCTYNTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSL 190
P+T T + L++ GF+ +K G + + ++N LING CK AV L
Sbjct: 155 PDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVEL 214
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+M++ G + PD H YTT I+GL K G + A +F +G
Sbjct: 215 FDDMVARGYQ-----------------PDVHTYTTIINGLCKIGETVAAAGLFRKMGEAG 257
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + T + +ID LCK R+ A DIF M+ G++P++ TYN +I G C + ++A
Sbjct: 258 CQPDVVTYSTIIDSLCKDRRVNEALDIFS-YMKAKGISPNIFTYNSLIQGLCNFSRWREA 316
Query: 311 NGLLLDMEETGLEPN 325
+ +L +M + PN
Sbjct: 317 SAMLNEMMSLNIMPN 331
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L +L + P++ T++ L+ G C +G + +A RLF+ + PN++
Sbjct: 450 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVM 509
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPD 111
+N L A LF E+ F +P+V T II+GLCK+G
Sbjct: 510 YNILIDAMCKSRNLKEARKLFSEL---FVQGLQPNVQIYTTIINGLCKEG---------- 556
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
++ + L MEE GC + +SY
Sbjct: 557 -----LLDEALEAFRNMEE-------------------------------DGCPPNEFSY 580
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
N++I G+ + ++ AV L EM +G AD T
Sbjct: 581 NVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 185/411 (45%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL P+ TF +LI+GLC EG+I +A LF K+ PNV+T
Sbjct: 115 LNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVT 174
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 175 YGTLINGLCKVGNTNAAIRLLRSM--EQGN-CQPDVVVYTSIIDSLCKDRQVTEAFNLFS 231
Query: 102 FMMDQGMRPD-----------------------------------VVTLNVMTDNLSKDG 126
M+ QG+ PD VV + + D L K+G
Sbjct: 232 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEG 291
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
K+ EA+ ++++MI R V PN TYN LMDG S+ G +V SYN
Sbjct: 292 KITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYN 351
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LINGYCK + ++ A L EM + + + TYNTL M +
Sbjct: 352 TLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAH 411
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y +D L K + EAM + I I+ +IDG+C+ G L+ A
Sbjct: 412 GQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAA 471
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DIF L + GL P+V TY IMI+G C+ G +AN L ++M+ G P+
Sbjct: 472 RDIFSNL-SSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPD 521
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 149/345 (43%), Gaps = 52/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L P+ V FN L+ + + L +++ F P+V T N L
Sbjct: 57 RMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNIL-------- 108
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+N F + +P L K ++ G++PD T + L +GK+ +A
Sbjct: 109 ---INSFCHLNRPGFA-----FSVLAK---ILKLGLQPDTATFTTLIRGLCVEGKIGDAL 157
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
L + MI PN TY TL++G + C+ DV Y +I+
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
CKDR V +A +L +M+ +GI D TY +L ++ N + PD
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+++T +D L K G + EA V + + T N L+DG C + A +F
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ N G P+V++YN +I+G+CK + KA L +M + L PN
Sbjct: 338 MVHN-GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 381
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 37/205 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
PN VT+N+L+ GLC GR+ +A LF ++ P++ T+ L L + +E +
Sbjct: 380 PNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMAL 439
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSK 124
I PD+ T +IDG+C+ G + +G+RP+V T +M + L +
Sbjct: 440 LKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCR 499
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G ++EAN L M +P+ CTYNT+ G + R
Sbjct: 500 RGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALR------------------- 540
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
A+ L +EML+ G AD +T L
Sbjct: 541 --AIQLLQEMLARGFSADVSTTTLL 563
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 125/372 (33%), Positives = 185/372 (49%), Gaps = 55/372 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +L +IL P+ TF +L++GLC G+I EA +F K+ PNV+T
Sbjct: 104 LNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVT 163
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL ALNLF EM+ + G+ PD+ T ++I LC
Sbjct: 164 YGTLMNGLCKDRQLTEALNLFSEMIAK-GI--SPDIFTYNSLIHALCNLCEWKHVTTLLN 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ + P+VV+LN++ D L K+GK+ EA+ ++++MIQ V P+ TY LMDG S
Sbjct: 221 EMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRS 280
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ GC +V SYN LINGYCK + ++ A+ L EM + + + TY+
Sbjct: 281 EMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYS 340
Query: 208 TLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL + +V P+ Y+ +D L KN + EAM + AI
Sbjct: 341 TLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGS 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
++ N IDG+C+ G L+ A D+F L GL PDV T+NIMI G CK G +
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPR-GLQPDVWTHNIMIRGLCKRGLLDE 459
Query: 310 ANGLLLDMEETG 321
A+ L +M+E G
Sbjct: 460 ASKLFREMDENG 471
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 95/373 (25%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILE---AARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75
F + FN+L L + R+L +F+ + + ++T+ L+L ++M
Sbjct: 27 FQSKSLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTV----LSLSKKM 82
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKD 125
+ FG+ PDV T T +I+ C ++ G +PD T + L
Sbjct: 83 -DSFGI--PPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVV 139
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
GK+ EA + + M+ PN TY TLM NG CKDR +
Sbjct: 140 GKIGEALDVFDKMVGEGFQPNVVTYGTLM---------------------NGLCKDRQLT 178
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINN------------------------------ 215
+A++L EM+++GI D TYN+L A+ N
Sbjct: 179 EALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVV 238
Query: 216 -----------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
V PD Y +DG + EA+KVF + + CV
Sbjct: 239 DALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCV 298
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ + N LI+G CKI R+ A +F + + L P+ +TY+ +IHG C G+ Q A
Sbjct: 299 CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE-LIPNTMTYSTLIHGLCHVGRLQDAIA 357
Query: 313 LLLDMEETGLEPN 325
L +M G PN
Sbjct: 358 LFNEMVACGQIPN 370
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 96/224 (42%), Gaps = 49/224 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN +T+++LI GLC GR+ +A LF ++ PN++T++ L A+
Sbjct: 334 PNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMAL 393
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L E G PDV IDG+C+ G + +G++PDV T N+M
Sbjct: 394 LKAIE------GSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIM 447
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
L K G ++EA+ L M + N CTYNT+ G +K R
Sbjct: 448 IRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSR------------- 494
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
A+ L EML+ G AD +T L +++ D V
Sbjct: 495 --------AIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSV 530
>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 199/411 (48%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + GF +L +IL + P+ VT N+LIKGLC +G++ +A KL N ++
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------- 100
+ TL A+ ++ G + KPDVV IID +CK
Sbjct: 167 YATLINGVCKIGDTRAAIKFLRKID---GRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFS 223
Query: 101 -------------------GF---------------MMDQGMRPDVVTLNVMTDNLSKDG 126
GF M+ + + P+V T N++ D L K+G
Sbjct: 224 EMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH------------DVYSYN 172
K++EA +L VM++ V P+ TY+TLMDG+ + K +H DV++Y
Sbjct: 284 KVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
ILING+CK++ V++A++L +EM + + TY++L M
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P D Y++ IDGL KNG + A+ +F+ + + + I T L+DGLCK GRLK A
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDA 463
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F L+ G +V TYN+MI+G CK+G ++A +L ME+ G PN
Sbjct: 464 QEVFQDLL-TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 166/400 (41%), Gaps = 92/400 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L TP ++ FN ++ A L +L + P++IT N L +N F
Sbjct: 49 RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNIL----INCF 104
Query: 73 ---EEMVNEFGVICK-------PDVVTCTNIIDGLC----------------KDGFMMDQ 106
++ F V+ K PD VT +I GLC GF ++Q
Sbjct: 105 CHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 164
Query: 107 G-----------------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+PDVV N + D + K + EA L
Sbjct: 165 VSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSE 224
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRN 183
M + ++ + TYNTL+ GF K +VY+YNIL++ CK+
Sbjct: 225 MAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V++A S+ ML ++ D TY+TL M++ V PD H YT
Sbjct: 285 VKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 344
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+G KN V EA+ +F + V I T + LIDGLCK GR+ WD+ M++
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDE-MRDR 403
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G DV+TY+ +I G CK G +A L M++ + PN
Sbjct: 404 GQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPN 443
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 71/281 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL +++ PN+ T+N L+ LC EG++ EA + + C P+VIT
Sbjct: 247 VGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVIT 306
Query: 61 --------------------FNTLALV------------------------ALNLFEEMV 76
FN ++L+ ALNLF+EM
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
+ V P +VT +++IDGLCK G M D+G DV+T + + D L K+G
Sbjct: 367 QKNMV---PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG 423
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYN 172
++ A L M +++ PN T+ L+DG +KG +VY+YN
Sbjct: 424 HLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYN 483
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
++ING+CK +E+A+++ +M G +A T+ T+ +A+
Sbjct: 484 VMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIAL 524
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 185/410 (45%), Gaps = 89/410 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +L +IL P+ TF +LI+GLC EG+I +A LF K+ PNV+T
Sbjct: 117 LNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVT 176
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ TL A+ L M E G C+PDVV T+IID LCKD
Sbjct: 177 YGTLINGLCKVGNTNAAIRLLRSM--EQGN-CQPDVVVYTSIIDSLCKDRQVTEAFNLFS 233
Query: 102 FMMDQGMRPD-----------------------------------VVTLNVMTDNLSKDG 126
M+ QG+ PD VV + + D L K+G
Sbjct: 234 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEG 293
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
K+ EA+ ++++MI R V PN TYN LMDG S+ G +V SYN
Sbjct: 294 KITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYN 353
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-----------------MAINN 215
LINGYCK + ++ A L EM + + + TYNTL M +
Sbjct: 354 TLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHG 413
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD Y +D L K + EAM + I I+ +IDG+C+ G L+ A
Sbjct: 414 QIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DIF L + GL P+V TY IMI+G C+ G +AN L ++M+ G P+
Sbjct: 474 DIFSNL-SSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPD 522
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 150/347 (43%), Gaps = 56/347 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
R+L P+ V FN L+ + + L +++ F P+V T N L + LN
Sbjct: 59 RMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLN 118
Query: 71 ----LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
F + + +PD T T +I GLC +G M+ +G +P+VVT
Sbjct: 119 RLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYG 178
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+ + L K G A LL M Q + C+ DV Y +I+
Sbjct: 179 TLINGLCKVGNTNAAIRLLRSMEQGN---------------------CQPDVVVYTSIID 217
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPP 218
CKDR V +A +L +M+ +GI D TY +L ++ N + P
Sbjct: 218 SLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 277
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D +++T +D L K G + EA V + + T N L+DG C + A +F
Sbjct: 278 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 337
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ N G P+V++YN +I+G+CK + KA L +M + L PN
Sbjct: 338 DTMVHN-GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 383
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 71/241 (29%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------ALN 70
+ PN++++N+LI G C R+ +A LF+++ PN +T+NTL A+
Sbjct: 345 YAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIA 404
Query: 71 LFEEMVNE------------FGVICK--------------------PDVVTCTNIIDGLC 98
LF EMV +CK PD+ T +IDG+C
Sbjct: 405 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMC 464
Query: 99 KDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+ G + +G+RP+V T +M + L + G ++EAN L M +P+ C
Sbjct: 465 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGC 524
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
TYNT+ G + R A+ L +EML+ G AD +T
Sbjct: 525 TYNTITQGLLQNKEALR---------------------AIQLLQEMLARGFSADVSTTTL 563
Query: 209 L 209
L
Sbjct: 564 L 564
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 184/410 (44%), Gaps = 90/410 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ +++S P+++T N+++ GLC + R+ EA L ++ C PN T+
Sbjct: 174 GRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTY 233
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ AL+L +M + KP VVT T IID LCKDG
Sbjct: 234 GPILNRMCKSGNTASALDLLRKMEHR---KIKPHVVTYTIIIDNLCKDGRLDDALSFFSE 290
Query: 103 -----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
M+ + + P+VVT + + D+L K+GK
Sbjct: 291 METKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGK 350
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+ EA L MI R + PNT TYN+L+ G SKGC D+++YNI
Sbjct: 351 LTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNI 410
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LING+CK + V+D + L R+M G+ AD TY+TL M
Sbjct: 411 LINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQG 470
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V P Y +DGL NG + EA+ + + K L I N +I G+C ++ AW
Sbjct: 471 VHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAW 530
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L + G+ D+ +YNIM+ G CK +A+ L M+E G EP+
Sbjct: 531 SLFCSL-PSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPD 579
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 143/338 (42%), Gaps = 62/338 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ T N +I C ++ A K+ +PN +TFNTL A+ L
Sbjct: 124 DLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELV 183
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLC-KD---------GFMMDQGMRPDVVTLNVMTDNL 122
+ MV V PD++T I++GLC KD MM G +P+ T + + +
Sbjct: 184 DCMVLSQHV---PDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRM 240
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K G A LL M R + P+ V +Y I+I+ CKD
Sbjct: 241 CKSGNTASALDLLRKMEHRKIKPH---------------------VVTYTIIIDNLCKDG 279
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
++DA+S EM ++GI+A+ TYN+L M + P+ ++
Sbjct: 280 RLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFS 339
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
ID L K G + EA +++ + T N LI GLC RL A + LM +
Sbjct: 340 ALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMD-LMVS 398
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G PD+ TYNI+I+GFCK Q L M G+
Sbjct: 399 KGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGM 436
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 36/225 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN +T+NSLI GLC + R+ EA ++ + CDP++ T+N L + L
Sbjct: 368 PNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
F +M G+I D VT + +I G C+ M+ QG+ P ++T ++ D
Sbjct: 428 FRKMSLR-GMIA--DTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDG 484
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHD 167
L +G++EEA +L+ M + + + YN ++ G AW SKG + D
Sbjct: 485 LCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRD 544
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+ SYNI+++G CK ++ +A +L R+M +G D TYNTL A
Sbjct: 545 IQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRA 589
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 136/320 (42%), Gaps = 58/320 (18%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
+A LF+ + P VI FN L FG++ + +++ LCK
Sbjct: 73 DAVALFQSMLRSRPLPTVIDFNRL--------------FGLLARTKQY---DLVLALCKQ 115
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M +G+ D+ TLN+M + + K+ A + + + PNT T+NTL++G
Sbjct: 116 --MELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLE 173
Query: 161 SKG------------CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ +H D+ + N ++NG C V +AV L M++ G + + TY
Sbjct: 174 GRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTY 233
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ M + P YT ID L K+G + +A+ FS +
Sbjct: 234 GPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMET 293
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPDVVTYNIMIHGFCKEG 305
+ T N LI C GR WD L+++ +TP+VVT++ +I KEG
Sbjct: 294 KGIKANVFTYNSLIGSFCSFGR----WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEG 349
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +A L +M G+EPN
Sbjct: 350 KLTEAKDLYNEMITRGIEPN 369
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 33/233 (14%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
D K ++A L + M++ P +N L A KG +D+Y+
Sbjct: 68 DIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYT 127
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
NI+IN +C+ R + A S ++ G + T+NTL M
Sbjct: 128 LNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMV 187
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
++ PD T ++GL V EA+ + + + + C T +++ +CK G
Sbjct: 188 LSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTA 247
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+ M++ + P VVTY I+I CK+G+ A +ME G++ N
Sbjct: 248 SALDLLRK-MEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKAN 299
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 178/371 (47%), Gaps = 54/371 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S +LG+++ + P++VTF SL+ G C RI +A L + +PNV+ +N
Sbjct: 115 RLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYN 174
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
TL +AL L EM + + D+VT ++ GLC G M
Sbjct: 175 TLIDCLCKNGDVNIALELLNEMEKKGRL--AADLVTYNTLLTGLCYSGEWRQAARILRDM 232
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + PDV T + D K G ++EA L + M+Q + PNT TYN+L++G
Sbjct: 233 TKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRL 292
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC +V +YN LING+CK R VED + L + M EG+ D TYNTL
Sbjct: 293 YHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTL 352
Query: 210 ------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M V PD + + GL NG + AM F+ + + +
Sbjct: 353 IHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEK 412
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I N +I GLCK +++ AW++F L G+ PD TY IMI G CK G ++A+
Sbjct: 413 YLGIVAYNIMIHGLCKADKVEEAWELFCRL-PVEGVKPDARTYTIMILGLCKNGPRREAD 471
Query: 312 GLLLDMEETGL 322
L M+E G+
Sbjct: 472 ELFRRMKEDGI 482
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 179/374 (47%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S LLG+++ F P++VT SL+ G C R EA L + +PNV+ +N
Sbjct: 665 RFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYN 724
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL +F M + G++ D VT +I GLC G M
Sbjct: 725 TVINGLCKNRDLNNALEIFYGMEKK-GIV--ADAVTYNTLISGLCNSGRWTDAARLLRDM 781
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+ + D K+G + EA L + MI+R V+PN TYN+L++GF
Sbjct: 782 VKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRL 841
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV +YN LI G+CK + VED + L EM +G+ DA TYNTL
Sbjct: 842 GDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTL 901
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M VPPD Y +D L NG + +A+ + + ++
Sbjct: 902 IHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQM 961
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ I T N +I G+C+ ++K AW +F L + G+ D + Y MI G C+ G ++A+
Sbjct: 962 DVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK-GVKLDAIAYITMISGLCRNGLRREAD 1020
Query: 312 GLLLDMEETGLEPN 325
L M+E G P+
Sbjct: 1021 KLCTRMKEDGFMPS 1034
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 137/334 (41%), Gaps = 59/334 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L +L S P++V F ++ + + LF K+ ++ +F L
Sbjct: 599 AFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTIL-- 656
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
C+ C+ L G MM G +P +VTL + + +
Sbjct: 657 ------------IHCFCR-----CSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGN 699
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ +EA L++ M + + PN YNT +ING CK+R++ +
Sbjct: 700 RFQEAVSLVDSMAELGLEPNVVIYNT---------------------VINGLCKNRDLNN 738
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A+ + M +GI ADA TYNTL M + P+ +T ID
Sbjct: 739 ALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALID 798
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K G +LEA ++ + I T N LI+G C GRL A +F LM + G
Sbjct: 799 TFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFD-LMVSKGCF 857
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PDVVTYN +I GFCK + + L +M GL
Sbjct: 858 PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGL 891
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 53/274 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LL ++ PN++ F +LI EG +LEA L+K++ PN++T+
Sbjct: 769 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTY 828
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A ++F+ MV++ C PDVVT +I G CK DG
Sbjct: 829 NSLINGFCIQGRLGDAKHMFDLMVSKG---CFPDVVTYNTLITGFCKSKRVEDGMKLFCE 885
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M QG+ D T N + + GK+ A + M+ V P+ TYN L+D K
Sbjct: 886 MTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGK 945
Query: 163 GCRH--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ +YNI+I G C++ V++A L R + +G++ DA Y T
Sbjct: 946 IEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYIT 1005
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ I GL +NG EA K+
Sbjct: 1006 M-----------------ISGLCRNGLRREADKL 1022
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
K ++A L M+Q P+ + ++ A +K G HD+YS+
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
ILI+ +C+ A++L +M+ G + T +L MA
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ P+ +Y T I+GL KN + A+++F + V T N LI GLC GR A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ + P+V+ + +I F KEG +A L +M + PN
Sbjct: 775 ARLLRDMVKRK-IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPN 824
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---------WWSK-----GCRHDVYSYN 172
+ E+A L M+Q P+ + L+ A ++S+ G HD+YS+
Sbjct: 45 RFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFT 104
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
ILI+ +C+ + A+S+ +M+ G T+ +L + G
Sbjct: 105 ILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSL-----------------LHGFCL 147
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ +A + +++ + N LID LCK G + IA ++ + + + L D+V
Sbjct: 148 RNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLV 207
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN ++ G C G+ ++A +L DM + + P+
Sbjct: 208 TYNTLLTGLCYSGEWRQAARILRDMTKRRINPD 240
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
L G+ EDA+ L EM+ + L AI N+ Y T I
Sbjct: 36 LRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANL----RRYETVI------ 85
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
+ + M++F I + TI LI C+ RL +A I +M+ G P +VT
Sbjct: 86 -YFSQQMELF-GISHDLYSFTI-----LIHCFCRCSRLSLALSILGKMMK-LGYDPSIVT 137
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++HGFC + A L+ M ++G EPN
Sbjct: 138 FGSLLHGFCLRNRIHDAFSLVASMVKSGYEPN 169
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 182/375 (48%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ S P+++++N+LI GLC G A +FKK+ C PNV+T+
Sbjct: 177 GKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTY 236
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
NT+ LV A++ EMV G PD +T +I+ GLC G +
Sbjct: 237 NTIIDSLCKDRLVNDAMDFLSEMV---GRGIPPDAITYNSIVHGLCCLGQLNEATRLFKR 293
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M+Q G +PDVVT N++ D+L KD + +A L M+ + + P+ TY T++ G +
Sbjct: 294 MEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQ 353
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC+ DV +YN +I+ CKDR V DA+ EM+ GI +A TY+T
Sbjct: 354 LNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYST 413
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M NV P++ ++ +DGL + G V EA VF +
Sbjct: 414 ILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKG 473
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T N L++G C ++ A +F +M G PD+ +YNI+I+G+C + KA
Sbjct: 474 VEPNIYTYNALMNGYCLRCKMNEARKVFE-IMVGKGCAPDLHSYNILINGYCNSRRMDKA 532
Query: 311 NGLLLDMEETGLEPN 325
LL M L PN
Sbjct: 533 KALLTQMSVKKLTPN 547
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 54/337 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P++VT+ +++ GLC G++ EA RLFKK+ C P+V+ +NT+ LV A+
Sbjct: 336 PDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEF 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EMV+ G+ P+ VT + I+ G C G M+ + + P+ +T +++ D
Sbjct: 396 LSEMVDR-GI--PPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDG 452
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L ++G + EA + E M ++ V PN TYN LM+G+ KGC D
Sbjct: 453 LCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPD 512
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++SYNILINGYC R ++ A +L + M++ + P++ Y T +
Sbjct: 513 LHSYNILINGYCNSRRMDKAKALLTQ-----------------MSVKKLTPNTVTYNTIM 555
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G +L+A ++F + + + T+ T + L++GLCK G L A +F M+ L
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKS-MKEKKL 614
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
PD++ Y I+I G G+ + A GL + G++P
Sbjct: 615 EPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQP 651
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 162/357 (45%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
T + + N LI LC + A ++ K+ P+VITF TL VA+
Sbjct: 125 THTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVE 184
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L+ EMV +PDV++ +I+GLC G M G +P+VVT N + D
Sbjct: 185 LYNEMVRSGH---EPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIID 241
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
+L KD + +A L M+ R + P+ TYN+++ G + GC+
Sbjct: 242 SLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKP 301
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
DV +YNI+I+ KDR V DA EM+ +GI D TY T+
Sbjct: 302 DVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLF 361
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD Y T ID L K+ V +AM+ S + + T + ++ G C +
Sbjct: 362 KKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNL 421
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A +F M + P+ +T++I++ G C+EG +A + M E G+EPN
Sbjct: 422 GQLDEATQLFKE-MVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPN 477
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G H VYS NILIN C+ +V+ AVS+ +M GI+ D T+ TL
Sbjct: 123 GVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVA 182
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + PD Y T I+GL +G A+ VF + + C + T N +ID
Sbjct: 183 VELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDS 242
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK + A D F M G+ PD +TYN ++HG C GQ +A L ME+ G +P
Sbjct: 243 LCKDRLVNDAMD-FLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKP 301
Query: 325 N 325
+
Sbjct: 302 D 302
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 39/165 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL ++ + TPN VT+N+++KGLC GR+L+A LFKK+ C ++
Sbjct: 528 RMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKM----CSSGML--- 580
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
P ++T + +++GLCK G M ++ + PD+
Sbjct: 581 ----------------------PTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI 618
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ ++ + + GK+E A L + + P TYN ++ G
Sbjct: 619 ILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 184/374 (49%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +LG++L + P+ VT SL+ G C R+ +A L K+ P+++ +N
Sbjct: 135 QVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYN 194
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ AL+ F+E + G+ +P+VVT T +++GLC G M
Sbjct: 195 AIIDSLCKTRRVNDALDFFKE-IGRKGI--RPNVVTYTALVNGLCNSGRWNDAARLLRDM 251
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+T + + D K+GK+ EA + E M++ ++P+ TY++L++G
Sbjct: 252 IKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV SYN LING+CK + VED + L R+M G+ + TYNTL
Sbjct: 312 DEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTL 371
Query: 210 ---FMAINN---------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
F + + V PD Y + GL NG + +A+ +F + +
Sbjct: 372 IQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEM 431
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK G+++ AW +F L GL PD+VTY M+ G C +G +
Sbjct: 432 DLDIVTYTTVIQGMCKTGKVEDAWGLFCSL-SLKGLKPDIVTYTTMMSGLCTKGLQHEVE 490
Query: 312 GLLLDMEETGLEPN 325
L M++ GL N
Sbjct: 491 ALYTKMKQEGLMKN 504
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++V FN L+ + + L KK+ V ++ TFN + +N F
Sbjct: 83 PSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN----IVINCF-------- 130
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
C + L G M+ G PD VT+ + + + ++ +A L++ M++
Sbjct: 131 -------CCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
P+ YN ++D KG R +V +Y L+NG C D
Sbjct: 184 IGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWND 243
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A L R+M+ I + TY+ L M ++ PD Y++ I+
Sbjct: 244 AARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLIN 303
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL + + EA ++F + + C + + N LI+G CK R++ +F + Q GL
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR-GLV 362
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ VTYN +I GF + G KA M+ G+ P+
Sbjct: 363 NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 33/234 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+D K+ +A L M++ P+ +N L+ K G R+D+Y
Sbjct: 62 RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLY 121
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP--------- 217
++NI+IN +C V A+S+ +ML G D T +L F N V
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181
Query: 218 ------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD Y ID L K V +A+ F IG + T L++GLC GR
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + +++ +TP+V+TY+ ++ F K G+ +A + +M ++P+
Sbjct: 242 NDAARLLRDMIKRK-ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPD 294
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 181/374 (48%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +LG++L + P+ VT SL+ G C R+ +A L K+ P+++ +N
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A + F+E + G+ +P+VVT T +++GLC M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKE-IERKGI--RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+T + + D K+GK+ EA L E M++ ++P+ TY++L++G
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV SYN LING+CK + VED + L REM G+ ++ TYNTL
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD Y + GL NG + +A+ +F + +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK G+++ AW +F L GL PD+VTY M+ G C +G +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490
Query: 312 GLLLDMEETGLEPN 325
L M++ GL N
Sbjct: 491 ALYTKMKQEGLMKN 504
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNV 117
A++LF +MV P +V ++ + K M G+R D+ T N+
Sbjct: 69 AIDLFSDMVKSRPF---PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ + ++ A +L M++ P+ T +L++GF ++ G
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ D+ +YN +I+ CK + V DA +E+ +GIR + TY L
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + P+ Y+ +D KNG VLEA ++F + I T + LI+GL
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C R+ A +F LM + G DVV+YN +I+GFCK + + L +M + GL N
Sbjct: 306 CLHDRIDEANQMFD-LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 65/263 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LL ++ TPN++T+++L+ G++LEA LF+++ DP+++T+
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFM----MDQ 106
++L L + +E F ++ C DVV+ +I+G CK DG M Q
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358
Query: 107 ------------------------------------GMRPDVVTLNVMTDNLSKDGKMEE 130
G+ PD+ T N++ L +G++E+
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF-------AWWS-------KGCRHDVYSYNILIN 176
A + E M +R+++ + TY T++ G WS KG + D+ +Y +++
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Query: 177 GYCKDRNVEDAVSLCREMLSEGI 199
G C + + +L +M EG+
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGL 501
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+D K+ +A L M++ P+ +N L+ K G R+D+Y
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++NI+IN +C V A+S+ +ML G D T +L ++G
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL-----------------VNG 164
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ V +A+ + + I N +ID LCK R+ A+D F + + G+ P
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRP 223
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VVTY +++G C + A LL DM + + PN
Sbjct: 224 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 259
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G L + N VT+N+LI+G G + +A F +++ F P++ T+N
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L AL +FE+M + D+VT T +I G+CK G + +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDL---DIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+G++PD+VT M L G + E L M Q + N C TL DG
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC---TLSDG 511
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 181/374 (48%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +LG++L + P+ VT SL+ G C R+ +A L K+ P+++ +N
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A + F+E + G+ +P+VVT T +++GLC M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKE-IERKGI--RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+T + + D K+GK+ EA L E M++ ++P+ TY++L++G
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRI 311
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV SYN LING+CK + VED + L REM G+ ++ TYNTL
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD Y + GL NG + +A+ +F + +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK G+++ AW +F L GL PD+VTY M+ G C +G +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490
Query: 312 GLLLDMEETGLEPN 325
L M++ GL N
Sbjct: 491 ALYTKMKQEGLMKN 504
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNV 117
A++LF +MV P +V ++ + K M G+R D+ T N+
Sbjct: 69 AIDLFSDMVKSRPF---PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ + ++ A +L M++ P+ T +L++GF ++ G
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ D+ +YN +I+ CK + V DA +E+ +GIR + TY L
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + P+ Y+ +D KNG VLEA ++F + I T + L++GL
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGL 305
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C R+ A +F LM + G DVV+YN +I+GFCK + + L +M + GL N
Sbjct: 306 CLHDRIDEANQMFD-LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 65/263 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LL ++ TPN++T+++L+ G++LEA LF+++ DP+++T+
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFM----MDQ 106
++L L + +E F ++ C DVV+ +I+G CK DG M Q
Sbjct: 299 SSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358
Query: 107 ------------------------------------GMRPDVVTLNVMTDNLSKDGKMEE 130
G+ PD+ T N++ L +G++E+
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF-------AWWS-------KGCRHDVYSYNILIN 176
A + E M +R+++ + TY T++ G WS KG + D+ +Y +++
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Query: 177 GYCKDRNVEDAVSLCREMLSEGI 199
G C + + +L +M EG+
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGL 501
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+D K+ +A L M++ P+ +N L+ K G R+D+Y
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++NI+IN +C V A+S+ +ML G D T +L ++G
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL-----------------VNG 164
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ V +A+ + + I N +ID LCK R+ A+D F + + G+ P
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRP 223
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VVTY +++G C + A LL DM + + PN
Sbjct: 224 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 259
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G L + N VT+N+LI+G G + +A F +++ F P++ T+N
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L AL +FE+M + D+VT T +I G+CK G + +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDL---DIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+G++PD+VT M L G + E L M Q + N C TL DG
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC---TLSDG 511
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 175/358 (48%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F P+++T+ ++IKGLC G A +L KK+ C P+V+ +NT+ A A+
Sbjct: 172 FAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAM 231
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
F EMV++ G+ P+VVT ++I+ G C G M+ + + P+ VT ++
Sbjct: 232 YFFSEMVDQ-GI--PPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
D L K+G + EA + E+M + V P+ TY+ LMDG+ S KG
Sbjct: 289 DGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFA 348
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
V YNILING+CK R + +A +L EM + D TY+TL
Sbjct: 349 PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PDS Y+ +DGL K+G + EA ++ A+ K I N LI G+C
Sbjct: 409 FKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCN 468
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L+ A ++F L G+ P VVTY +MI G KEG +A + M G PN
Sbjct: 469 FGKLEAARELFSNLFVK-GIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN 525
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 59/324 (18%)
Query: 56 PNVITFNTL--ALVALNLFEEMVNEFGVICK--------PDVVTCTNIIDGLCKD----- 100
P V+ FN L +LV + +++ +CK P+V T T +I+ LC
Sbjct: 67 PPVVVFNKLLGSLVKKKHYSTVIS----LCKQMDLSNIRPNVYTLTILINCLCHSNRDHV 122
Query: 101 -------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
G M G++P VT + + L K+ +A L + + + P+ TY T+
Sbjct: 123 HFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTI 182
Query: 154 MDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ G KGC+ DV +YN +I+ CKDR +A+ EM+ +GI
Sbjct: 183 IKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGI 242
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ TY+++ M NV P++ +T +DGL K G +LEA +
Sbjct: 243 PPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARR 302
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
VF + + T + L+DG C ++ A +F +M G P V YNI+I+G
Sbjct: 303 VFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFD-IMVGKGFAPSVRVYNILINGH 361
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK + +A LL +M + L P+
Sbjct: 362 CKSRRLNEAKTLLSEMYDRDLTPD 385
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 127/318 (39%), Gaps = 89/318 (27%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA+ ++ PN+VT++S++ G C G++ EA LFK++ PN +TF
Sbjct: 226 RANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFT 285
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
L L A +FE M+ E GV +PD T + ++DG C M
Sbjct: 286 ILVDGLCKEGMILEARRVFE-MMTENGV--EPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ +G P V N++ + K ++ EA LL M RD+ P+T TY+TLM GF
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRP 402
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSL------------------- 190
S G D +Y+IL++G CK ++++A L
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462
Query: 191 ------------CREMLS----EGIRADATTYNTLF------------------MAINNV 216
RE+ S +GI+ TY + M +N
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGC 522
Query: 217 PPDSHVYTTYIDGLYKNG 234
P+S Y I G +NG
Sbjct: 523 LPNSCTYNVAIQGFLRNG 540
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL------FEE 74
P+ +T++ L+ GLC G + EA RL K + +P++ +N L N E
Sbjct: 419 PDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAREL 478
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
N F +P VVT T +I GL K+G M+ G P+ T NV +
Sbjct: 479 FSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLR 538
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+G A L+E M+ R + ++ T+ L+D
Sbjct: 539 NGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L + + P++VT+ +I GL EG EA +F+K+ V C PN T+
Sbjct: 470 GKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTY 529
Query: 62 NTL---------ALVALNLFEEMV 76
N A+ L EEMV
Sbjct: 530 NVAIQGFLRNGDPSNAVRLIEEMV 553
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 180/361 (49%), Gaps = 83/361 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT +L+KGLC + RI +A +LF K+ C PNV+T TL +AL L
Sbjct: 405 PDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464
Query: 72 FEEMVNE---FGVICKPDVVTCTNIIDGLCK----------------------------- 99
+ M+++ +G+ CKP+ ++ + IIDGLCK
Sbjct: 465 HKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSL 524
Query: 100 -DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
GF M+D G++PDV T +V+ D L K+GK+ EAN LLEVMIQR
Sbjct: 525 IHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGC 584
Query: 144 NPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVS 189
PNT TY TL+ G + GC DV +Y L+ G C+ N++ A+
Sbjct: 585 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 644
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L ++MLS D Y T N PD Y+ IDGL K+G EA ++F +
Sbjct: 645 LHKKMLS-----DTGQYGT------NFKPDVISYSIIIDGLCKHGREDEARELFKEMKAL 693
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ + + LI G C+ G+L+ A +F+ M + G+ + VTY++MIHGFCKEGQ K
Sbjct: 694 GVIPNVISYTSLIHGFCRSGKLEDAKHLFNE-MVDQGVQLNAVTYSVMIHGFCKEGQIDK 752
Query: 310 A 310
A
Sbjct: 753 A 753
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 169/346 (48%), Gaps = 60/346 (17%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+++LIKGLC + RI EA +LF + C P+ I + TL +AL+L
Sbjct: 44 DIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLH 103
Query: 73 EEMVN---EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
+EM+N ++G+ CKP +V+ + IIDGLCKD M QGM PDV++ +
Sbjct: 104 QEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI 163
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ GK E+A CL M+ + + T + L+D +GC
Sbjct: 164 HGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCI 223
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +Y+ LI G C + +A L M G R DA Y TL
Sbjct: 224 LDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTL---------------- 267
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNH------KCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ GL + G + A+++ + N KC T+ + + +IDGLCK R A ++F
Sbjct: 268 -MKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFK 326
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ PDV++Y +IHGFC G+ +KA L +M + G++P+
Sbjct: 327 E-MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 371
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 180/375 (48%), Gaps = 83/375 (22%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+++LIKGLC + RI EA RLF + C P+ I + TL AL L
Sbjct: 225 DIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLH 284
Query: 73 EEMVNE---FGVICKPDVVTCTNIIDGLCKD----------------------------- 100
+EM+N+ +G+ CKP +++ + IIDGLCKD
Sbjct: 285 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLI 344
Query: 101 -GF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GF M+D G++PDV T +V+ D L K GK+ EAN LLEV+IQR
Sbjct: 345 HGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCI 404
Query: 145 PNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSL 190
P+ T TL+ G + GC +V + L+ G C+ N++ A+ L
Sbjct: 405 PDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 464
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ MLS D + Y N P++ Y+ IDGL K G EA ++F +
Sbjct: 465 HKNMLS-----DTSPYGI------NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 513
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + + LI G C+ G+ K A +F+ M + G+ PDV T++++I CKEG+ +A
Sbjct: 514 VIPDVISYTSLIHGFCRSGKWKDAKYLFNE-MVDIGVQPDVTTFSVLIDMLCKEGKVIEA 572
Query: 311 NGLLLDMEETGLEPN 325
N LL M + G PN
Sbjct: 573 NELLEVMIQRGCIPN 587
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G++PDV T V+ D K+GK+ EAN LLEVM+QR
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQR--------------------- 39
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPD 219
GC D+ +Y+ LI G C + +A L M G R DA Y TL + +
Sbjct: 40 GCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIA 99
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
H++ ++ + G KC T+ + + +IDGLCK R A ++F
Sbjct: 100 LHLHQEMLNDTSQYGI--------------KCKPTLVSYSIIIDGLCKDRREDEARELFK 145
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ PDV++Y +IHGFC+ G+ +KA L +M + G+ +
Sbjct: 146 E-MKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSD 190
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 119/270 (44%), Gaps = 49/270 (18%)
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+PDV T +ID CK+G M+ +G D+VT + + L ++ EA
Sbjct: 7 QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------------GCRHDVYSYNI 173
L M + P+ Y TLM G K C+ + SY+I
Sbjct: 67 LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFMAINNVP 217
+I+G CKDR ++A L +EM ++G+ D +Y + LF + +V
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVG 186
Query: 218 PDSHVYTT--YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
S V T+ ID L K G V+EA ++ + C+L I T + LI GLC R+ A
Sbjct: 187 IRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEAT 246
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+F M MQ G PD + Y ++ G C+ G
Sbjct: 247 RLF-MSMQKLGCRPDAIAYGTLMKGLCQTG 275
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 42/207 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ TF+ LI LC EG+++EA L + + C PN +T+ TL A L
Sbjct: 551 PDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQL 610
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGM-----RPDVVTL 115
F +M + G C PDVVT ++ GLC+ G + D G +PDV++
Sbjct: 611 FMKM-QKLG--CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 667
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
+++ D L K G+ +EA L + M V PN +Y +L+ GF K
Sbjct: 668 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 727
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAV 188
G + + +Y+++I+G+CK+ ++ A+
Sbjct: 728 QGVQLNAVTYSVMIHGFCKEGQIDKAL 754
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 171/353 (48%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P + T+ ++I GLC G AA LFKK+ C PNV+T+N L +L L E ++
Sbjct: 198 PTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDI 257
Query: 79 FGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSK 124
F + PD+ T ++I GLC K+ M + P++ T NV+ D + K
Sbjct: 258 FSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICK 317
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+GK+ EA + + M + V P+ TY++LM G+ A +KGC+ D +S
Sbjct: 318 EGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFS 377
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YNILI GYCK + +++A L EM+ +G+ D YNTL M
Sbjct: 378 YNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMH 437
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N PD Y+ +DG K G++ +A ++F + + I N LID +CK G LK
Sbjct: 438 SNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLK 497
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F L GL P+V Y +I+ CKEG +A +ME G P+
Sbjct: 498 DARKLFSELFVQ-GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPD 549
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 178/374 (47%), Gaps = 50/374 (13%)
Query: 1 MGRASGGFVLLGRIL-MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
MG+ G + L + + ++ +P++ T + LI R+ A +F K+ P+ +
Sbjct: 107 MGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAV 166
Query: 60 TFNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FM 103
TFNTL L + F + V F C+P V T T II+GLCK G M
Sbjct: 167 TFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM 226
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAWW 160
+ G +P+VVT N++ D+L KD + EA + M + ++P+ TYN+L+ G F W
Sbjct: 227 EEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286
Query: 161 SKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +++++N+L++ CK+ V +A + + M G+ D TY++L
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M PD+ Y I G K + EA ++F+ + +
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
N LI GLC++GRL+ A D+F + N L PD+ TY++++ GFCKEG KA
Sbjct: 407 TPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNL-PDLFTYSMLLDGFCKEGYLGKAF 465
Query: 312 GLLLDMEETGLEPN 325
L M+ T L+P+
Sbjct: 466 RLFRVMQSTYLKPD 479
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ ++N LIKG C RI EA +LF ++ P+ + +NTL L L E +
Sbjct: 373 PDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDL 432
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F + PD+ T + ++DG CK+G+ M ++PD+ N++ D + K
Sbjct: 433 FKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCK 492
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
G +++A L + + + PN Y T+++ GC D +S
Sbjct: 493 FGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFS 552
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
YN++I G+ + ++ A L EM G A+A T
Sbjct: 553 YNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 115/287 (40%), Gaps = 72/287 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ TFN L+ +C EG++ EA +FK + +P+V+T+++L + A L
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+ M+ + CKPD + +I G CK M+ QG+ PD V N +
Sbjct: 363 FDAMITKG---CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHG 419
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-----------HD 167
L + G++ EA L + M P+ TY+ L+DGF + K R D
Sbjct: 420 LCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPD 479
Query: 168 VYSYNILI-----------------------------------NGYCKDRNVEDAVSLCR 192
+ YNILI N CK+ +++A+ R
Sbjct: 480 IAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFR 539
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
M +G D +YN + +S I + GFV EA
Sbjct: 540 NMEGDGCPPDEFSYNVIIRGFLQYKDESRA-AQLIGEMRDRGFVAEA 585
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 182/405 (44%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
GF +L +++ P ++TF +LI GLC G +A LF + C P+V T+ T+
Sbjct: 145 GFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIIN 204
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQG 107
A L ++M E G C+PDVVT + +ID LCKD +M +G
Sbjct: 205 GLCKMGETAAAAGLIKKM-GEVG--CQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKG 261
Query: 108 MRP-----------------------------------DVVTLNVMTDNLSKDGKMEEAN 132
+ P D+VT +++ D K+G + EA
Sbjct: 262 ISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQ 321
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGY 178
+L+ M + V PN TYN+LM G++ ++GC+ DV+SY+ILINGY
Sbjct: 322 GVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGY 381
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C + +++A L EM+ +G+ + +Y TL M N PD
Sbjct: 382 CMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDL 441
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y+ ++G K G++ +A ++F A+ + LID +CK G L A +F
Sbjct: 442 CTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSE 501
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + GL PDV Y +I+G CKEG +A MEE G PN
Sbjct: 502 LFVH-GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPN 545
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 141/335 (42%), Gaps = 89/335 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VTF+ LI C EG +LEA + K + +PNVIT+N+L + A L
Sbjct: 299 PDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDN 121
F+ M+ CKPDV + + +I+G C K F M+ QG+ P+ V+ +
Sbjct: 359 FDVMITRG---CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHA 415
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-----------HD 167
+ GK+ EA L + M P+ CTY+ L++GF + K R +
Sbjct: 416 FCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPN 475
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y ILI+ CK N+ A L E+ G++ PD +YTT I
Sbjct: 476 LVMYTILIDSMCKSGNLNHARKLFSELFVHGLQ-----------------PDVQIYTTII 518
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K G + EA++ F M+ G
Sbjct: 519 NGLCKEGLLDEALEAFRK------------------------------------MEEDGC 542
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P+ +YN++I GF + +A L+ +M + G
Sbjct: 543 PPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGF 577
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 123/267 (46%), Gaps = 34/267 (12%)
Query: 92 NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ-RDVNPNTCTY 150
NI D L M+ + P ++ N + + + + +A L ++ ++PNTCT
Sbjct: 70 NIDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTL 129
Query: 151 NTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
N L++ GF+ +K G + + ++ LING CK A+ L +M++
Sbjct: 130 NILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVA 189
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
G + D TY T+ M PD Y+T ID L K+ V E
Sbjct: 190 RGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNE 249
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ +FS + T+ + LI GLC R K A + + M + + PD+VT++++I
Sbjct: 250 ALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNE-MTSLNIMPDIVTFSLLI 308
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
FCKEG +A G+L M E G+EPN
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPN 335
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 30/215 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ +++ LI G C RI EA +LF ++ PN +++ TL A L E
Sbjct: 369 PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAREL 428
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F + PD+ T + +++G CK G+ M ++P++V ++ D++ K
Sbjct: 429 FKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCK 488
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
G + A L + + P+ Y T+++G GC + +S
Sbjct: 489 SGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFS 548
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
YN++I G+ + ++ AV L EM +G AD T
Sbjct: 549 YNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L + + P++ + ++I GLC EG + EA F+K+ C PN ++N +
Sbjct: 498 LFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIR--- 554
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG 107
G + D +I + GF+ D+G
Sbjct: 555 ----------GFLQHKDESRAVQLIGEMRDKGFVADEG 582
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 175/374 (46%), Gaps = 89/374 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +LG+I+ F P+ VTF+SLI GLC E + A F ++ PN+ T
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHT 191
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NT+ VA+ L ++M G +PD+V IIDGLCKD
Sbjct: 192 YNTIIKGFCKIGKTTVAVGLLKKMDKAGG---RPDIVIYNTIIDGLCKDRLVSEALDIFS 248
Query: 103 ------------------------------------MMDQGMRPDVVTLNVMTDNLSKDG 126
MM + PDVVT N++ D L K+G
Sbjct: 249 EIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEG 308
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
+ EA ++++MI++ V PN TYN+LM+G+ A +KGC +V SYN
Sbjct: 309 MLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYN 368
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
ILINGYCK + +++A RE+ E M+ + P++ Y T I GL +
Sbjct: 369 ILINGYCKAQRIDEA----RELFDE-------------MSFRGLIPNTFNYNTLISGLCQ 411
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G EA ++F + C + TC L+D LCK+G L A +F MQ+ L P++V
Sbjct: 412 AGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRA-MQDSCLKPNLV 470
Query: 293 TYNIMIHGFCKEGQ 306
TY+I+I K G+
Sbjct: 471 TYDILIRAMYKSGK 484
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 157/357 (43%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN--- 77
P +V F+ L+ L L K++ + + +V FN L +N F +
Sbjct: 82 PCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNIL----INCFSRLQRVDF 137
Query: 78 EFGVICK-------PDVVTCTNIIDGLC-KDGF---------MMDQGMRPDVVTLNVMTD 120
F V+ K PD VT +++I+GLC +D F M+ G +P++ T N +
Sbjct: 138 AFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIK 197
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K GK A LL+ M + P+ YNT++DG KG R
Sbjct: 198 GFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRP 257
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------------- 209
DV++Y+IL++G C E+A +L EM+S I D T+N L
Sbjct: 258 DVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGII 317
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M V P+ Y + ++G V EA VF A+ C+ + + N LI+G CK
Sbjct: 318 KIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKA 377
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A ++F M GL P+ YN +I G C+ G+H +A L DM+ G P+
Sbjct: 378 QRIDEARELFDE-MSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPD 433
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 22/127 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+V++N LI G C RI EA LF +++ PN +NTL A L
Sbjct: 362 PNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAREL 421
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F++M + C PD+VTCT ++D LCK G+ M D ++P++VT +++
Sbjct: 422 FKDMQAQG---CSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRA 478
Query: 122 LSKDGKM 128
+ K GK+
Sbjct: 479 MYKSGKI 485
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 179/371 (48%), Gaps = 55/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F P++V + +LI GLC G A RL + + C P+V+ +
Sbjct: 158 GQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVY 217
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL A NLF EM+ + G+ P++VTC +++ LC G
Sbjct: 218 GTLIHSLCKDRQQTQAFNLFSEMITK-GI--SPNIVTCNSLVYALCNLGEWKHVNTLLNE 274
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+D + P+ ++L + D L K+G + +A+ ++++M Q V P+ TY L+DG S
Sbjct: 275 MVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSE 334
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC +V+SYN LINGYCK ++ A+ L EM + + + TYNT
Sbjct: 335 MDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + +V PD Y +D L KN + +AM + AI
Sbjct: 395 LIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN 454
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I+ +IDG+C+ G L+ A D+F L + GL P+V TYNIM HG CK G +A
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNL-SSKGLKPNVWTYNIMTHGLCKRGLLDEA 513
Query: 311 NGLLLDMEETG 321
L ++M+E
Sbjct: 514 TKLFMEMDENA 524
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 49/229 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L + PN VT+N+LI GLC GR+ +A LF+++ P+++T+
Sbjct: 369 RMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYR 428
Query: 63 TL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----- 105
L A+ L E G PD+ T +IDG+C+ G + D
Sbjct: 429 ILLDYLCKNCHLDKAMALLKAIE------GSNLDPDIQIYTIVIDGMCRAGELEDARDLF 482
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+G++P+V T N+MT L K G ++EA L M + + + CTYNT+ GF
Sbjct: 483 SNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGF--- 539
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++ A+ L EML+ G D +T L
Sbjct: 540 ------------------LRNNETSRAIQLLEEMLARGFSCDVSTTTLL 570
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 154 MDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
MD F G H+VY+ N+LIN +C V A S+ ++L G + D ++ TL
Sbjct: 100 MDSF-----GIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGL 154
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M PD +Y T I+GL K G A+++ ++ C +
Sbjct: 155 CLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDV 214
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
LI LCK + A+++F ++ G++P++VT N +++ C G+ + N LL
Sbjct: 215 VVYGTLIHSLCKDRQQTQAFNLFSEMITK-GISPNIVTCNSLVYALCNLGEWKHVNTLLN 273
Query: 316 DMEETGLEPN 325
+M ++ + PN
Sbjct: 274 EMVDSKIMPN 283
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 120/321 (37%), Gaps = 103/321 (32%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ +V TLNV+ ++ ++ A +L +++ P+T ++ TL+ G
Sbjct: 104 GIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEA 163
Query: 158 -------AW--------------------------------WSKG-CRHDVYSYNILING 177
W KG C+ DV Y LI+
Sbjct: 164 LHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHS 223
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV--------------- 222
CKDR A +L EM+++GI + T N+L A+ N+ HV
Sbjct: 224 LCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPN 283
Query: 223 ---YTTYIDGLYKNGFVL-----------------------------------EAMKVFS 244
TT +D L K G V EA+KVF
Sbjct: 284 AISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFD 343
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + C + + N LI+G CKI R+ A +F + + L P+ VTYN +IHG C
Sbjct: 344 MMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQK-LIPNTVTYNTLIHGLCHV 402
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G+ Q A L +M G P+
Sbjct: 403 GRLQDAIALFREMVACGQIPD 423
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 181/354 (51%), Gaps = 48/354 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + PN+ +++ +IKGLC G+ E +L + + V C+P+V+ +
Sbjct: 175 GKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIY 234
Query: 62 NTLA--LVALNLFEEMVNEF----GVICKPDVVTCTNIIDGL-----CKDGFMMDQGMR- 109
NT+ L L E V+ F G P VVT T++I GL K+ F + M+
Sbjct: 235 NTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294
Query: 110 ----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
PD+V +V+ D + K+G++ EA +L+ M + V P+ TYNTLM+G+
Sbjct: 295 GNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVE 354
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
SKG DV+S++IL+NGYCK + +++A L EM G+ D +YNTL
Sbjct: 355 ARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTL-- 412
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I GL + LEA ++F + ++ + T + L+D L K G L
Sbjct: 413 ---------------ISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYL 457
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F M+N GL PD+VTYNIMI G CK G+ + A L ++ GL+PN
Sbjct: 458 DQAMGLFRA-MENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPN 510
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 56/338 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V +N+++ LC + + EA +F K+ P V+T+ +L L L ++E
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKE---A 285
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
FG++ + K G +M PD+V +V+ D + K+G++ EA +L+ M
Sbjct: 286 FGLLNE-------------MKGGNIM-----PDLVAFSVLIDIMCKEGEVSEARVILKTM 327
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ V P+ TYNTLM+G+ SKG DV+S++IL+NGYCK + +
Sbjct: 328 TEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRI 387
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A L EM G+ D +YNTL M N PP+ Y+
Sbjct: 388 DEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSIL 447
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+D L K G++ +AM +F A+ N + T N +IDG+CK G+ K A ++F L G
Sbjct: 448 LDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAEL-SVKG 506
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L P+ I G CK G +A+ ME+ P
Sbjct: 507 LQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 127/282 (45%), Gaps = 45/282 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNV 117
AL+ F MVN + P +V + L + M G+ DV++L +
Sbjct: 75 ALSAFNHMVNTNPL---PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + + ++ +L +I+ + PN T++TL++GF ++G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ +V+SY+I+I G C+ + + L M G D YNT+
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTI-------------- 237
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+D L K+ V EA+ +F + + T+ T LI GL +GR K A+ + + M+
Sbjct: 238 ---VDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNE-MK 293
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD+V ++++I CKEG+ +A +L M E G+EP+
Sbjct: 294 GGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPD 335
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 18/144 (12%)
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
RN+ DA+S M++ + LF A+ + YK L
Sbjct: 70 RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKH------------YKTVVSLSKQM 117
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ I + LTI LI+ C++ + + + +++ GL P+V+T++ +I+GF
Sbjct: 118 EMAGISHDVLSLTI-----LINCFCRLCHVDYGFSVLGKIIK-LGLEPNVITFSTLINGF 171
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C EG+ +A L M G +PN
Sbjct: 172 CIEGKIGRAIELFDVMVARGYKPN 195
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 200/411 (48%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------ 42
MG+ + GF +L +IL + P+ +TF +LIKGLC +G++ +A
Sbjct: 107 MGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVS 166
Query: 43 -----------------ARLFKKLNVFCCDPNVITFNT---------LALVALNLFEEMV 76
+L +K++ PNV +NT L A LF EM
Sbjct: 167 YGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT 226
Query: 77 NEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSKDG 126
+ G+ DVVT T +I G C K+ M+ + + P+V T N++ D L K+G
Sbjct: 227 AK-GI--SADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEG 283
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH------------DVYSYN 172
K++EA +L VM++ V P+ TY+TLMDG+ + K +H DV+SY
Sbjct: 284 KVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYT 343
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
ILING+CK++ V++A++L +EM + + TY++L M
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDR 403
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+P + Y + IDGL KNG + A+ +F+ + + T L+DGLCK GRLK A
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDA 463
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ F L+ G DV YN+MI+G CK+G ++A +L MEE G PN
Sbjct: 464 QEAFQDLL-TKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPN 513
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 167/399 (41%), Gaps = 92/399 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L TP ++ FN ++ A L +L + P++IT N L +N F
Sbjct: 49 RMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNIL----INCF 104
Query: 73 ---EEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGM---- 108
++ F V+ K P +T T +I GLC G ++ QG+
Sbjct: 105 CHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQ 164
Query: 109 -------------------------------RPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+P+V N + D L K + EA L
Sbjct: 165 VSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSE 224
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRN 183
M + ++ + TY TL+ GF S K +VY+YNIL++ CK+
Sbjct: 225 MTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V++A ++ ML ++ D TY+TL M++ V PD H YT
Sbjct: 285 VKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTI 344
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+G KN V EA+ +F + V I T + LIDGLCK GR+ WD+ M++
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDE-MRDR 403
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G+ +V+TYN +I G CK G +A L M++ G+ P
Sbjct: 404 GIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRP 442
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 71/272 (26%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT--------- 60
LL +++ PN+ T+N L+ LC EG++ EA + + C P+VIT
Sbjct: 256 LLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYF 315
Query: 61 -----------FNTLALV------------------------ALNLFEEMVNEFGVICKP 85
FN ++L+ ALNLF+EM + V P
Sbjct: 316 LVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMV---P 372
Query: 86 DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+VT +++IDGLCK G M D+G+ +V+T N + D L K+G ++ A L
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALF 432
Query: 136 EVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKD 181
M + + P + T+ L+DG +KG DVY YN++ING+CK
Sbjct: 433 NKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQ 492
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+E+A+++ +M G +A T++ + A+
Sbjct: 493 GLLEEALTMLSKMEENGCVPNAVTFDIIINAL 524
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 60/208 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + L+ + N++T+NSLI GLC G + A LF K+ D +
Sbjct: 388 GRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMK----DQGI--- 440
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
+P T T ++DGLCK G + D +G D
Sbjct: 441 ----------------------RPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLD 478
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
V NVM + K G +EEA +L M + PN T +
Sbjct: 479 VYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVT---------------------F 517
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGI 199
+I+IN K + A L R+M+ G+
Sbjct: 518 DIIINALFKKDENDKAEKLLRQMICRGL 545
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 179/372 (48%), Gaps = 55/372 (14%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
S LG+++ P++VTF SL+ G C RI +A +F ++ +PNV+ +NT+
Sbjct: 133 SLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTI 192
Query: 65 ---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
AL+L M + G+ +PD VT ++I GLC G M
Sbjct: 193 IDGLCKSKQVDNALDLLNRMEVD-GI--RPDAVTYNSLISGLCNSGRWDDATRMVSCMTK 249
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---- 161
+ + PDV T N + D K+G++ EA L E MI+R ++P+ TY+ L+ G +S
Sbjct: 250 REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDE 309
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-- 209
KGC DV +Y+ILINGYCK + VE + L EM G+ + TY L
Sbjct: 310 AEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQ 369
Query: 210 ----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+M VPP+ Y + GL NG + +A+ + + +
Sbjct: 370 GYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDA 429
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T N +I G+CK G + AWD++ L GLTPD+ TY M+ G K+G +A+ L
Sbjct: 430 DIVTYNIIIRGMCKAGEVADAWDLYCSL-NLKGLTPDIWTYTAMMLGLYKKGLRGEADAL 488
Query: 314 LLDMEETGLEPN 325
M+E G+ PN
Sbjct: 489 FRKMKEDGILPN 500
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 150/372 (40%), Gaps = 87/372 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ F+ L+ + + L++++ + N+ T N L LN F
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNIL----LNCF-------- 126
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
C+ C+ + L G MM G PD+VT + + + ++ +A + + M++
Sbjct: 127 --CR-----CSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYC------- 179
PN YNT++DG + G R D +YN LI+G C
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDD 239
Query: 180 ----------------------------KDRNVEDAVSLCREMLSEGIRADATTYNTL-- 209
K+ + +A L EM+ + D TY+ L
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIY 299
Query: 210 ----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
FM PD Y+ I+G K+ V MK+F + V
Sbjct: 300 GLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T LI G C+ G+L +A +IF M G+ P+++TYN+++HG C G+ +KA +
Sbjct: 360 NTVTYTVLIQGYCRAGKLNVAEEIFK-WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 314 LLDMEETGLEPN 325
L DM+++G++ +
Sbjct: 419 LADMQKSGMDAD 430
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 60/264 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L ++ P++VT++ LI GLC R+ EA ++F + C P+V+T+
Sbjct: 270 GRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTY 329
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L + LF EM ++ GV+ + VT T +I G C+ G +
Sbjct: 330 SILINGYCKSKKVEHGMKLFCEM-SQRGVV--RNTVTYTVLIQGYCRAGKLNVAEEIFKW 386
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ P+++T NV+ L +GK+E+A +L M +
Sbjct: 387 MVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK---------------------S 425
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G D+ +YNI+I G CK V DA L Y +L + + PD
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDL---------------YCSL--NLKGLTPDIWT 468
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAI 246
YT + GLYK G EA +F +
Sbjct: 469 YTAMMLGLYKKGLRGEADALFRKM 492
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 30/150 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL------------ALVA 68
N VT+ LI+G C G++ A +FK + VFC PN+IT+N L ALV
Sbjct: 360 NTVTYTVLIQGYCRAGKLNVAEEIFKWM-VFCGVPPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVM 118
L ++ + D+VT II G+CK G + D +G+ PD+ T M
Sbjct: 419 LADMQKSGMD------ADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAM 472
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
L K G EA+ L M + + PN C
Sbjct: 473 MLGLYKKGLRGEADALFRKMKEDGILPNEC 502
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADA--TTYNTLFMAINNVP-PDSHVYTTYIDGLY 231
I G C R S REML GIR + + F + P P ++ + +
Sbjct: 33 ICGLCFSRRAYSGGSDYREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92
Query: 232 KNG------FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
K ++ E M++ I ++ C TCN L++ C+ +L +A +M+
Sbjct: 93 KMKKYDVVIYLWEQMQML-GIPHNLC-----TCNILLNCFCRCSQLSLALSFLGKMMK-L 145
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PD+VT+ +++GFC+ + A + M E G EPN
Sbjct: 146 GHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPN 185
>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
Length = 1205
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 200/408 (49%), Gaps = 84/408 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------ 42
MG+ + GF +L +IL + P+ VT N+LIKGLC +G++ +A
Sbjct: 107 MGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 166
Query: 43 -----------------ARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVIC 83
+L +K++ PNV+ ++T+ AL L E F +
Sbjct: 167 YGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMT 226
Query: 84 ----KPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
DVVT + +I G C +G + + + + P+V T N++ D L K+GK++
Sbjct: 227 VKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVK 286
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH------------DVYSYNILI 175
EA +L VM++ V P+ TY+TLMDG+ + K +H DV++Y ILI
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILI 346
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NG+CK++ V++A++L +EM + + TY++L M P
Sbjct: 347 NGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQP 406
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+ Y++ IDGL KNG + A+ +F+ + + T L+DGLCK GRLK A ++
Sbjct: 407 ANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEV 466
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F L+ G +V TYN+MI G CK+G ++A +L ME+ G P+
Sbjct: 467 FQDLL-TKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPD 513
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 166/400 (41%), Gaps = 92/400 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L TP ++ FN ++ A L +L + P++IT N L +N F
Sbjct: 49 RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNIL----INCF 104
Query: 73 ---EEMVNEFGVICK-------PDVVTCTNIIDGLC----------------KDGFMMDQ 106
++ F V+ K PD VT +I GLC GF ++Q
Sbjct: 105 CHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQ 164
Query: 107 G-----------------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+P+VV + + D L K + EA L
Sbjct: 165 VSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSE 224
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRN 183
M + ++ + TY+TL+ GF K +VY+YNIL++ CK+
Sbjct: 225 MTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V++A S+ ML ++ D TY+TL M++ V PD H YT
Sbjct: 285 VKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTI 344
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+G KN V EA+ +F + V I T + LIDGLCK GR+ WD+ M +
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDE-MHDR 403
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +V+TY+ +I G CK G +A L M++ G+ PN
Sbjct: 404 GQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPN 443
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 40/235 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + F +L +IL + P+ +TF +LI GLC +G++ +A KL N ++
Sbjct: 974 MGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVS 1033
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------F 102
+ TL A+ L ++ G + KPDVV IID LCK F
Sbjct: 1034 YGTLINGVCKIGDTRAAIKLLRKID---GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFF 1090
Query: 103 MMD-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ DVVT N + GK++EA LL M+ + +NPN TYN L+D
Sbjct: 1091 EMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEG 1150
Query: 162 K----------------GCRHDVYSYNILING-YCKDRNVEDAVSLCREMLSEGI 199
K GC+ + ++ I+I+ + KD N + L EM++ G+
Sbjct: 1151 KDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDEN-DKVEKLLHEMIARGL 1204
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++PD+ TLN++ + G++ +L +++R +P+T T+ TL++G
Sbjct: 955 KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
++G + + SY LING CK + A+ L R++ + D YNT+
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTI-- 1072
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
ID L K+ V +A +F + + T N LI G C +G+L
Sbjct: 1073 ---------------IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKL 1117
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH--QKANGLLLDMEETGLEPN 325
K A + + ++ + P+V TYNI++ CKEG+ ++ +L ME+ G + N
Sbjct: 1118 KEAIGLLNKMVLKT-INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKAN 1172
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 106/210 (50%), Gaps = 37/210 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
TP++ T+ LI G C + EA LFK+++ P ++T+++L + +
Sbjct: 336 TPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWD 395
Query: 75 MVNEFGVICKP-DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+++E +P +V+T +++IDGLCK+G M DQG+RP+ T ++ D L
Sbjct: 396 LIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLC 455
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
K G++++A + + ++ + + N TYN ++I+G+CK
Sbjct: 456 KGGRLKDAQEVFQDLLTKGYHLNVYTYN---------------------VMIDGHCKQGL 494
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+E+A+++ +M G DA T+ + +A+
Sbjct: 495 LEEALTMLSKMEDNGCIPDAVTFEIIIIAL 524
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAINNV-----PPDSHVY 223
++ AVSL + +GI+ D T N L F + + PD+ +
Sbjct: 940 KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
TT I+GL G V +A+ + L + LI+G+CKIG + A + +
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI-- 1057
Query: 284 NPGLT-PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ LT PDVV YN +I CK KA GL +M G+ +
Sbjct: 1058 DGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISAD 1100
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L ++ PN TF L+ GLC GR+ +A +F+ L NV T+
Sbjct: 423 GHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK 99
N + L EE + + C PD VT II L K
Sbjct: 483 NVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFK 526
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 189/377 (50%), Gaps = 60/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R G L+ R+++ FTPN +T+ L+ GLC RI EA L K+ PNV+
Sbjct: 293 LNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVH 348
Query: 61 FNTLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
FNTL ++++M+N V PDV T + +++GLCK G
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNGYV---PDVFTFSTLVNGLCKKGLFGSALELV 405
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M +G +P++ T ++ D K G++EEA +L M+ + + NT YN L+
Sbjct: 406 NDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKH 465
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
SKGC+ D++++N LI G C+ +EDA++L R+M+ EG+ A++ T+
Sbjct: 466 GKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTF 525
Query: 207 NTLFMA-------------INNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL A +N++ P D Y I L K G V + + +F +
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+I TCN LI+G C G++ A + F M + G +PD+VTYN +I+G CK G+ Q
Sbjct: 586 KGLTPSIITCNILINGFCTAGKVHNALE-FMRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644
Query: 309 KANGLLLDMEETGLEPN 325
+A L ++ G++P+
Sbjct: 645 EALNLFEKLQAEGIQPD 661
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 36/241 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L +L F+ N V +N+LI LC G+I EA +F +++ C P++ TF
Sbjct: 431 GQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTF 490
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N+L AL L+ +MV E GVI + VT +I + G
Sbjct: 491 NSLIFGLCRVDEMEDALALYRDMVLE-GVIA--NSVTFNTLIHAFLRRGEIQEALKLVND 547
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G D +T N + L K G +E+ L E MI++ + P+ T N L++GF K
Sbjct: 548 MLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGK 607
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ +YN LING CK +++A++L ++ +EGI+ D+ TYNT
Sbjct: 608 VHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNT 667
Query: 209 L 209
L
Sbjct: 668 L 668
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 167/376 (44%), Gaps = 59/376 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSL----IKGLCTEGRILEAARLFKKLN-VFCCDPNV 58
A+ GF ++ R+L+ +V SL +K G +A RL + V+CC+P+
Sbjct: 116 AAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSF 175
Query: 59 ITFNTL---------ALVALNLFEEMVNE--------FGVICKPDVVTCTNIIDGLC--- 98
++N + VA N+F +M+++ FG++ K + N +D C
Sbjct: 176 RSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMK--ALCMVNEVDNACLLL 233
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+D M G P+ + + D LSK +++EA LLE M P+ T+NT++ GF
Sbjct: 234 RD--MTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC 291
Query: 159 WWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREM---------- 194
+ KG + +Y L++G CK +++A +L ++
Sbjct: 292 RLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNT 351
Query: 195 -----LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ G +AT + M N PD ++T ++GL K G A+++ + +
Sbjct: 352 LVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAK 411
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C + T LIDG CK G+L+ A I ++ G + + V YN +I CK G+ +
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTK-GFSLNTVGYNALISALCKHGKIHE 470
Query: 310 ANGLLLDMEETGLEPN 325
A + +M G +P+
Sbjct: 471 ALDMFGEMSSKGCKPD 486
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N VTFN+LI G I EA +L + C + IT+N L L LF
Sbjct: 521 NSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLF 580
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMRPDVVTLNVMTDNL 122
EEM+ + G+ P ++TC +I+G C G FM D +G PD+VT N + + L
Sbjct: 581 EEMIRK-GLT--PSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
K G+++EA L E + + P++ TYNTL+
Sbjct: 638 CKRGRIQEALNLFEKLQAEGIQPDSITYNTLI 669
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLFEEMVN 77
+T+N LIK LC G + + LF+++ P++IT N L A N E M +
Sbjct: 558 ITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRD 617
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGK 127
PD+VT ++I+GLCK G + + +G++PD +T N + L ++G
Sbjct: 618 MIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGA 677
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
++A LL ++ PN T+N L+ F S
Sbjct: 678 FDDACFLLYRGVENGFVPNDVTWNILVYNFGKQS 711
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 198/407 (48%), Gaps = 85/407 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITF 61
R F +L L + N+VTFN+L+ GL E ++ +A LFKKL C+PN + +
Sbjct: 112 RIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMY 171
Query: 62 NTL------------ALVALNLFEEM-----VNEFGVI----CK---------------- 84
T+ L L + E+ V + ++ CK
Sbjct: 172 GTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQ 231
Query: 85 ----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P++ T ++IDGLCK G M++ + P+V T +++ D L K+GK+E+
Sbjct: 232 KNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVED 291
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A+ ++ MI++ V P+ TY+ +MDG+ KG + +++SY+ILIN
Sbjct: 292 ADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILIN 351
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PP 218
GYCK +N+ A+ L E+ +G++ D TY+T+ + V P
Sbjct: 352 GYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTP 411
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D +++T + G +K G V EAM +FS + ++ I +I+GLCK R++ A IF
Sbjct: 412 DICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIF 471
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + GL PDV TYN+MI GFC+EG + G+L ME+ G N
Sbjct: 472 EKL-PSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPAN 517
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAW-------------- 159
LN++T++ +++ A +L + ++ + N T+NTL+ G FA
Sbjct: 100 LNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLV 159
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
K C + Y ++NG K + E +SL R M + D TY+ + A+
Sbjct: 160 REKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINL 219
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
N+PP+ Y + IDGL K G + + S + N + T + L
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDGLCK G+++ A ++ +++ G+ PD++TY+ ++ G+C GQ +A + + + G
Sbjct: 280 IDGLCKEGKVEDADEVMRHMIEK-GVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG 338
Query: 322 LEPN 325
++PN
Sbjct: 339 IKPN 342
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 142/320 (44%), Gaps = 48/320 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ PN+ TF+ LI GLC EG++ +A + + + +P++IT++ +
Sbjct: 260 LLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYC 319
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVV 113
+ F V+ KP++ + + +I+G CK G + +G++PD V
Sbjct: 320 LRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTV 379
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKG 163
T + + L + G++ +A + + M++ P+ C ++TL+ G+ +SK
Sbjct: 380 TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKL 439
Query: 164 CRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
R+ ++ Y ++ING CK+ V +A ++ ++ S G+ D TYN +
Sbjct: 440 ERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVM---------- 489
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I G + G E + + ++ C T N ++ G + ++ F
Sbjct: 490 -------ITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVS-FM 541
Query: 280 MLMQNPGLTPDVVTYNIMIH 299
M G + D T ++I+
Sbjct: 542 KEMAGRGFSFDATTTGVLIN 561
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L G I P+ VT+++++ GL GRI +A ++F ++ P++ +TL
Sbjct: 365 LFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYF 424
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVV 113
L EE + F + + ++ T +I+GLCK+ + + G+ PDV
Sbjct: 425 KYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVR 484
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
T NVM ++G +E +L M N TYN +M GF +K
Sbjct: 485 TYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNK----------- 533
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+ + VS +EM G DATT L + P
Sbjct: 534 ----------ISEIVSFMKEMAGRGFSFDATTTGVLINVLKENP 567
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 188/375 (50%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F+ +++ F + +++ +LI GLC G A L ++++ PNV+ +
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF----- 102
NT+ LV A +LF EMV++ G+ PDVVT + +I G C KD
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMVSK-GI--SPDVVTYSALISGFCILGKLKDAIDLFNK 285
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + ++PDV T N++ + KDGKM+E + ++M+++ + PN TYN+LMDG+ +
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ SY+I+ING+CK + ++A++L +EM + I D TY++
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP+ Y + +D L K V +A+ + + +
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T + LI GLC+ G+L+ A +F L+ G DV Y IMI GFC EG +A
Sbjct: 466 FQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK-GYNLDVYAYTIMIQGFCVEGLFNEA 524
Query: 311 NGLLLDMEETGLEPN 325
LL ME+ G P+
Sbjct: 525 LALLSKMEDNGCIPD 539
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 160/399 (40%), Gaps = 84/399 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LV 67
L R+L TP FN ++ L L +K+ PN++ N L
Sbjct: 72 LFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFC 131
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD----------------GFMMDQ- 106
L L + F I K PD +T T + GLC GF DQ
Sbjct: 132 QLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQI 191
Query: 107 ----------------------------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
++P+VV N + D++ K + EA L M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+ + ++P+ TY+ L+ GF K + DVY++NIL+N +CKD +
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++ ++ M+ +GI+ + TYN+L MA V PD Y+
Sbjct: 312 KEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G K EAM +F + + + T + LIDGL K GR+ A + M + G
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ-MHDRG 430
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P++ TYN ++ CK Q KA LL ++ G +P+
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD 469
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 152/344 (44%), Gaps = 61/344 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++++ P++ TFN L+ C +G++ E +F + PN +T
Sbjct: 273 LGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF-------- 102
+N+L LV A ++F M + GV PD+ + + +I+G CK F
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMA-QGGV--NPDIQSYSIMINGFCKIKKFDEAMNLFK 389
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + + PDVVT + + D LSK G++ A L++ M R V PN CTYN+++D
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL---- 445
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
CK V+ A++L + +G + D +TY+ L
Sbjct: 446 -----------------CKTHQVDKAIALLTKFKDKGFQPDISTYSIL------------ 476
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
I GL ++G + +A KVF + L + +I G C G A +
Sbjct: 477 -----IKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSK- 530
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G PD TY I+I K+ ++ A LL +M GL N
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
SY+ + + +V+DAVSL +L A +N + M
Sbjct: 52 SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P+ I+ + G + A VF+ I V T L GLC G++
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQI 171
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +FH + G D ++Y +IHG CK G+ + A LL ++ ++PN
Sbjct: 172 QQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ T+ ++I GLC G AA LFKK+ C NV+T++TL +L E ++
Sbjct: 78 PDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDI 137
Query: 79 FGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSK 124
F + P + T T++I GLC K+ M + P+VVT NV+ D K
Sbjct: 138 FSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCK 197
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
+GK+ A +L+ M + V P+ TYN+LM G++ W+ KGC+ DV+S
Sbjct: 198 EGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFS 257
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ILINGYCK + +++A L EM+ +G + +YNTL M
Sbjct: 258 YSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMH 317
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N P+ + Y +DG K G++ +A ++F A+ + + N L++ +CK G LK
Sbjct: 318 TNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLK 377
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++F L GL P+V Y +I+G CKEG +A +ME+ G P+
Sbjct: 378 DARELFSELFV-IGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPD 429
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 146/335 (43%), Gaps = 89/335 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTFN L+ C EG++L A + K + +P+V+T+N+L + A L
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+ M+ + CKPDV + + +I+G CK M+ QG P+ V+ N +
Sbjct: 243 FDVMITKG---CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHG 299
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + G++ EA L + M PN TY L+DGF A S + +
Sbjct: 300 LCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPN 359
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ YNIL+N CK N++DA RE+ SE + + + P+ +YTT I
Sbjct: 360 LVMYNILVNAMCKSGNLKDA----RELFSE-------------LFVIGLQPNVQIYTTII 402
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K G + EA++ F M++ G
Sbjct: 403 NGLCKEGLLDEALEAFRN------------------------------------MEDDGC 426
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PD +YN++I GF + +A L+ +M + G
Sbjct: 427 PPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGF 461
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 39/219 (17%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G++P +VT + + L K GK +A L + M+ R GC+
Sbjct: 40 GLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVAR---------------------GCQP 78
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D Y+Y +ING CK A L ++M G + + TY+TL
Sbjct: 79 DDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTL----------------- 121
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L K V EA+ +FS + TI T LI GLC R K A + + M +
Sbjct: 122 IHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNE-MTSLN 180
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVT+N+++ FCKEG+ A G+L M E G+EP+
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ +++ LI G C RI EA +LF ++ PN +++NTL L L E +
Sbjct: 253 PDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDL 312
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F + P++ T ++DG CK G+ M ++P++V N++ + + K
Sbjct: 313 FKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCK 372
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
G +++A L + + PN Y T+++G GC D +S
Sbjct: 373 SGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFS 432
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
YN++I G+ + ++ AV L EM G DA T
Sbjct: 433 YNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 176/383 (45%), Gaps = 97/383 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF +L+ GLC EGR++EA L ++ PN IT+ T+ + ALNL
Sbjct: 176 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNL 235
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M E I KP+VV + IIDGL KDG M ++G+ PD+ T N M D
Sbjct: 236 LRKM-EEMSHI-KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDG 293
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPN----------------------------------- 146
G+ EA LL+ M++R +NPN
Sbjct: 294 FCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPN 353
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T TYN+++DGF +KGC DV+++N LI+GYC + ++D L
Sbjct: 354 TITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLH 413
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
EM G+ AD TTYNTL I G G + A+ + + +
Sbjct: 414 EMTETGLVADTTTYNTL-----------------IHGFCLVGDLNAALDLSQQMISSGVC 456
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP----------GLTPDVVTYNIMIHGFC 302
I TCN L+DGLC G+LK A ++F + ++ G+ PDV TYNI+I G
Sbjct: 457 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLI 516
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
EG+ +A L +M G+ PN
Sbjct: 517 NEGKFLEAEELYKEMPHRGIVPN 539
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 173/385 (44%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+N +I G C+ GR EA RL +++ +PNV+T+
Sbjct: 263 GRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTY 322
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
+ L A V F EE+ +E G+I P+ +T ++IDG CK M
Sbjct: 323 SALINAYVKERKFFEAEELYDEMLPRGII--PNTITYNSMIDGFCKQNRLDAAEHMFYVM 380
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G PDV T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 381 ATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDL 440
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + N L++G C + ++DA+ + + M G
Sbjct: 441 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNG 500
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + P++ Y++ I+GL K + EA
Sbjct: 501 VEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEAT 560
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T N L+ G CK GR+ ++F M G+ D +TY +IHG
Sbjct: 561 QMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELF-CEMGRRGIVADAITYITLIHG 619
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 620 FRKVGNINGALDIFQEMISSGVYPD 644
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 155/347 (44%), Gaps = 46/347 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
P+++ FN L+ + R L++K+ +V +FN L + + ++
Sbjct: 75 PSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALST 134
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFMMD------QGMRPDVVTLNVMTDNLSKDGKM 128
FG I K PDVVT + ++ GLC + + + Q RP+VVT + + L ++G++
Sbjct: 135 FGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCREGRV 194
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNI 173
EA LL+ M++ + PN TY T++DG + +V Y+
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSA 254
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
+I+G KD DA +L EM +GI D TYN + M
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P+ Y+ I+ K EA +++ + + T N +IDG CK RL A
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+F+ +M G +PDV T+N +I G+C + LL +M ETGL
Sbjct: 375 HMFY-VMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGL 420
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 135/314 (42%), Gaps = 86/314 (27%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L PN +T+NS+I G C + R+ A +F + C P+V TFNTL
Sbjct: 341 LYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYC 400
Query: 65 ------------------ALVA---------------------LNLFEEMVNEFGVICKP 85
LVA L+L ++M++ +C P
Sbjct: 401 GAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMIS--SGVC-P 457
Query: 86 DVVTCTNIIDGLCKDGFMMD---------------------QGMRPDVVTLNVMTDNLSK 124
D+VTC ++DGLC +G + D G+ PDV T N++ L
Sbjct: 458 DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLIN 517
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+GK EA L + M R + PNT TY+++++G + SK DV +
Sbjct: 518 EGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVT 577
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHVYTTYI 227
+N L++GYCK V+D + L EM GI ADA TY TL F + N+ ++ I
Sbjct: 578 FNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMI 637
Query: 228 -DGLYKNGFVLEAM 240
G+Y + + +M
Sbjct: 638 SSGVYPDTITIRSM 651
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 22/135 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN +T++S+I GLC + R+ EA ++F + P+V+TFNTL L L
Sbjct: 538 PNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLEL 597
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM G++ D +T +I G K G M+ G+ PD +T+ M
Sbjct: 598 FCEM-GRRGIVA--DAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTV 654
Query: 122 LSKDGKMEEANCLLE 136
L +++ A +LE
Sbjct: 655 LWSKEELKRAVAMLE 669
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 179/363 (49%), Gaps = 52/363 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
++G+++ + P++VT +SLI G C R+ A L K+ C +V+ +NT+
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFC 185
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR---P 110
LV AL LF M + GV + D VT +++ GLC G M D MR P
Sbjct: 186 KTGLVNNALVLFGRMERD-GV--RADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVP 242
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
+V+T + + ++GK EA E MI+R ++P+ TYN+++ G
Sbjct: 243 NVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQIL 302
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +YN LING+CK + V++ L REM G+ D T+NT+
Sbjct: 303 DLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQA 362
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P+ Y+ + GL N V +A+ +F ++ + L I T N +
Sbjct: 363 GRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIV 422
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+C IG ++ AWD+F L GL PDVVTY MI GFC++ KA+ L M+E G
Sbjct: 423 IHGMCMIGNVEDAWDLFCSL-SFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQEDG 481
Query: 322 LEP 324
L P
Sbjct: 482 LLP 484
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 140/318 (44%), Gaps = 51/318 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + VL GR+ + VT+NSL+ GLC GR +AARL + + + PNVITF
Sbjct: 188 GLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITF 247
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L L A +EEM+ PDV T ++I GLC G
Sbjct: 248 TALINAFVREGKFLEAKKFYEEMIRR---CIDPDVFTYNSMIHGLCMHGQVDEAKQILDL 304
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G PDVVT N + + K +++E L+ M QR + +T T+NT++ G+ +
Sbjct: 305 MVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGR 364
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G R ++ +Y+IL+ G C + VE A+ L M + D TTYN +
Sbjct: 365 PDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIV-- 422
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I G+ G V +A +F ++ + T +I G C+ RL
Sbjct: 423 ---------------IHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCR-KRL 466
Query: 272 KIAWDIFHMLMQNPGLTP 289
D + MQ GL P
Sbjct: 467 WDKADFLYRKMQEDGLLP 484
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 145/333 (43%), Gaps = 85/333 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++V F+ L+ + LF + + ++ T+N + ++AL++
Sbjct: 67 PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSV 126
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP----DVVTLNVMTDNLSKDGK 127
+M+ +FG +PDVVT +++I+G C QG R D+V+ K
Sbjct: 127 VGKMM-KFGY--EPDVVTVSSLINGFC-------QGNRVFGAVDLVS------------K 164
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
MEE C L+V+I YNT++DGF CK V +A
Sbjct: 165 MEEMRCKLDVVI----------YNTIIDGF---------------------CKTGLVNNA 193
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ L M +G+RAD TYN+L M + ++ P+ +T I+
Sbjct: 194 LVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINA 253
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ G LEA K + + + T N +I GLC G++ A I LM G P
Sbjct: 254 FVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILD-LMVTKGCFP 312
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DVVTYN +I+GFCK + + L+ +M + GL
Sbjct: 313 DVVTYNTLINGFCKTKRVDEGTKLVREMSQRGL 345
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G HD+Y+YNI+IN C+ A+S+ +M+ G D T ++L
Sbjct: 99 GIGHDLYTYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSL------------- 145
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I+G + V A+ + S + +C L + N +IDG CK G + A +F M
Sbjct: 146 ----INGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGR-M 200
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ D VTYN ++ G C G+ A L+ DM + PN
Sbjct: 201 ERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPN 243
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 186/377 (49%), Gaps = 62/377 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL R+L+ F+ + +T+ L+ GLC G++ EA L K+ +PN + +
Sbjct: 289 GRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVLY 344
Query: 62 NTL--ALVALNLFEE----MVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MM 104
NTL VA FEE + N + +PD T +IDGL K G+ M+
Sbjct: 345 NTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMV 404
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DG--- 156
+ P+V+T ++ + K G++EEA ++ M + ++ NT YN L+ DG
Sbjct: 405 AKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIE 464
Query: 157 -----FAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F S KGC+ D+Y++N LING CK+ +E+A+SL +M EG+ A+ TYNTL
Sbjct: 465 EALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLV 524
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M P D+ Y I L K G V + + +F +
Sbjct: 525 HAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIF 584
Query: 253 LTIETCNCLIDGLCKIGR----LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
TI +CN LI GLC+ G+ LK D+ H GLTPD+VTYN +I+G CK G Q
Sbjct: 585 PTIISCNILISGLCRTGKVNDALKFLQDMIHR-----GLTPDIVTYNSLINGLCKMGHVQ 639
Query: 309 KANGLLLDMEETGLEPN 325
+A+ L ++ G+ P+
Sbjct: 640 EASNLFNKLQSEGIRPD 656
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 151/340 (44%), Gaps = 59/340 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P + TF ++K LC + A L + + C PN + + TL AL
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L E+M F + C+PDV T ++I GLC+ G M+ +G D +T +
Sbjct: 262 LLEDM---FLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMH 318
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCR 165
L + G+++EA LL + NPNT YNTL+ G+ + G
Sbjct: 319 GLCRMGQVDEARALL----NKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYE 374
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D Y++NI+I+G K + A+ L EM+++ + TY L
Sbjct: 375 PDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTIL---------------- 418
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+G K G + EA ++ +++ L NCLI LCK G ++ A +F M
Sbjct: 419 -INGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGE-MSGK 476
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PD+ T+N +I+G CK + ++A L DM G+ N
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIAN 516
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 115/276 (41%), Gaps = 71/276 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL ++ F PN++T+ LI G C +GR+ EAA + ++ N + +
Sbjct: 391 GYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGY 450
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD------------ 100
N L AL LF EM G CKPD+ T ++I+GLCK+
Sbjct: 451 NCLICALCKDGNIEEALQLFGEMS---GKGCKPDIYTFNSLINGLCKNHKMEEALSLYHD 507
Query: 101 ------------------GFMMDQGMRP---------------DVVTLNVMTDNLSKDGK 127
F+M ++ D +T N + L K G
Sbjct: 508 MFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGA 567
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
+E+ L E M+ + + P + N L+ G K G D+ +YN
Sbjct: 568 VEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNS 627
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
LING CK +V++A +L ++ SEGIR DA TYNTL
Sbjct: 628 LINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTL 663
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 56/318 (17%)
Query: 41 EAARLFKKL-NVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99
+A RL + V+ CDP ++N + ++ D C + +
Sbjct: 152 QATRLLLDMWGVYSCDPTFKSYNVV--------------LDILVDGD---CPRVAPNVFY 194
Query: 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
D M+ +G+ P V T V+ L +++ A LL M + PN+ Y TL+
Sbjct: 195 D--MLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCE 252
Query: 160 WSKG--------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
++ C DV ++N +I+G C+ + +A L ML G DA T
Sbjct: 253 NNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALT 312
Query: 206 YNTLFMA-------------INNVP-PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
Y L +N +P P++ +Y T I G +G EA + N+
Sbjct: 313 YGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLY---NNMV 369
Query: 252 VLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ E T N +IDGL K G L A ++ + ++ P+V+TY I+I+GFCK+G+
Sbjct: 370 IAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKR-FEPNVITYTILINGFCKQGRL 428
Query: 308 QKANGLLLDMEETGLEPN 325
++A ++ M GL N
Sbjct: 429 EEAAEIVNSMSAKGLSLN 446
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 22/153 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N VT+N+L+ I +A +L ++ C + IT+N L L LF
Sbjct: 516 NTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLF 575
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMRPDVVTLNVMTDNL 122
EEM+ + G+ P +++C +I GLC+ G F+ D +G+ PD+VT N + + L
Sbjct: 576 EEMLGK-GIF--PTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGL 632
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
K G ++EA+ L + + P+ TYNTL+
Sbjct: 633 CKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS 665
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 22/168 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L+ +L + +T+N LIK LC G + + LF+++ P +I+ N L
Sbjct: 536 AFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILIS 595
Query: 67 V---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
AL ++M++ G+ PD+VT ++I+GLCK G + + +G
Sbjct: 596 GLCRTGKVNDALKFLQDMIHR-GL--TPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+RPD +T N + +G +A LL + PN T++ L++
Sbjct: 653 IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 176/358 (49%), Gaps = 58/358 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVAL 69
N+++FN ++ GLC G++ A + + + V+ PNVIT+NTL A
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
+ +EMV + IC P+ VT +IDG CKD G M QG+RP+VVT N++
Sbjct: 214 AILKEMVAKG--IC-PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILI 270
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ L DGK++EA L + M+ D+ PN T+N L++GF +G
Sbjct: 271 NGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVD 330
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ +Y LI+ YCKD +EDA +L M+ GI + +TYN L
Sbjct: 331 PNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSL 390
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + D Y ID L K G +A+K+ + + T N L+DG C+
Sbjct: 391 MNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCR 450
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L+ A I M+ G +VVT+N++I GFC +G+ + ANGLL +M E GL PN
Sbjct: 451 EGNLRAAL-IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPN 507
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 145/322 (45%), Gaps = 81/322 (25%)
Query: 84 KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
K +++C ++ GL K+ M+ + + +V++ N++ + L K GK+ A
Sbjct: 117 KLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGD 176
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF-----------------AWWSKGCRHDVYSYNILIN 176
++E M V+PN TYNTL+DG+ +KG + +YNILI+
Sbjct: 177 VIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILID 236
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------------------- 210
G+CKD NV A+ + EM +G+R + TYN L
Sbjct: 237 GFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEP 296
Query: 211 ---------------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
M V P++ YTT ID K+G + +A ++
Sbjct: 297 NVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALY 356
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + + + T NCLI GLC+ G +K A + + ++ L+ DVVTYNI+I CK
Sbjct: 357 NMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK-LSADVVTYNILIDSLCK 415
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+G+ +KA LL +M E GL P+
Sbjct: 416 KGESRKAVKLLDEMFEKGLNPS 437
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 71/273 (26%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
SG + G + PN+VT+N LI GLC++G++ EA L ++ +PNV+T N L
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304
Query: 65 ---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
A+NLF +M + GV P+ +T T +ID CKDG M+D
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQ-GV--DPNAMTYTTLIDAYCKDGRMEDAFALYNMMID 361
Query: 106 QGMRP-----------------------------------DVVTLNVMTDNLSKDGKMEE 130
+G+ P DVVT N++ D+L K G+ +
Sbjct: 362 RGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRK 421
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A LL+ M ++ +NP+ TYNTLMDG+ KG + +V ++N+LI
Sbjct: 422 AVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIK 481
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G+C +EDA L EML G+ + TTY +
Sbjct: 482 GFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 179/360 (49%), Gaps = 83/360 (23%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT +L+KGLC + RI +A +LF K+ C PNV+T TL +AL L
Sbjct: 562 DVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELH 621
Query: 73 EEMVNE---FGVICKPDVVTCTNIIDGLCK------------------------------ 99
+ M+++ +G+ CKP+ ++ + IIDGLCK
Sbjct: 622 KNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLI 681
Query: 100 DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GF M+D G++PDV T +V+ D L K+GK+ EAN LLEVMIQR
Sbjct: 682 HGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI 741
Query: 145 PNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSL 190
PNT TY TL+ G + GC DV +Y L+ G C+ N++ A+ L
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALEL 801
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
++MLS D Y T N PD Y+ IDGL K+G EA ++F +
Sbjct: 802 HKKMLS-----DTGQYGT------NFKPDVISYSIIIDGLCKHGREDEARELFKEMKALG 850
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + + LI G C+ G+L+ A +F+ M + G+ + VTY++MIHGFCKEGQ KA
Sbjct: 851 VIPNVISYTSLIHGFCRSGKLEDAKHLFNE-MVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 156/345 (45%), Gaps = 62/345 (17%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+++LIKGLC E RI EA LF + C P+ IT+ TL +AL L
Sbjct: 88 DIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLH 147
Query: 73 EEMVNE---FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+EM+N+ +G+ CKP +++ + IIDGLCKD M QGM PDV++ +
Sbjct: 148 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLI 207
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
GK E+A CL M+ + P+ T L+D F K GC
Sbjct: 208 HGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCI 267
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D+ +Y+ LI G C + +A L M G R DA Y TL
Sbjct: 268 LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHL 327
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
I + PD + ID L K G V+EA ++ + C+L I T +
Sbjct: 328 HQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYST 387
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
LI GLC R+ A +F M MQ G PD +TY ++ G C+ G
Sbjct: 388 LIKGLCMEHRISEATWLF-MSMQKLGCRPDAITYGTLMKGLCQTG 431
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 180/375 (48%), Gaps = 83/375 (22%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+++LIKGLC E RI EA LF + C P+ IT+ TL +AL L
Sbjct: 381 DIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLH 440
Query: 73 EEMVNE---FGVICKPDVVTCTNIIDGLCKD----------------------------- 100
+EM+N+ +G+ CKP +++ + IIDGLCKD
Sbjct: 441 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLI 500
Query: 101 -GF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GF M+D G++PDV T +V+ D L K GK+ EAN LLEV+IQR
Sbjct: 501 HGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCI 560
Query: 145 PNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSL 190
+ T TL+ G + GC +V + L+ G C+ N++ A+ L
Sbjct: 561 LDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALEL 620
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ MLS D + Y N P++ Y+ IDGL K G EA ++F +
Sbjct: 621 HKNMLS-----DTSPYGI------NCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 669
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + + LI G C+ G+ K A +F+ M + G+ PDV T++++I CKEG+ +A
Sbjct: 670 VIPDVISYTSLIHGFCRSGKWKDAKYLFNE-MVDIGVQPDVTTFSVLIDMLCKEGKVIEA 728
Query: 311 NGLLLDMEETGLEPN 325
N LL M + G PN
Sbjct: 729 NELLEVMIQRGCIPN 743
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 140/334 (41%), Gaps = 69/334 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ TFN LI LC R+ E + P+++T++
Sbjct: 8 PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSI----------------- 50
Query: 81 VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+PDV T + +ID LCK+G M+ +G D+VT + + L + ++ E
Sbjct: 51 ---RPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 107
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------------AWWSKGCRHDVYS 170
A L M + P+ TY TLM G + C+ + S
Sbjct: 108 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 167
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+I+I+G CKDR ++A L +EM ++G+ D +Y +L M
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEML 227
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD ID K G V+EA ++ + + C+L I T + LI GLC R+
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
A +F M M+ G PD + Y ++ G C+ G+
Sbjct: 288 EATQLF-MSMKKLGCRPDAIAYGTLMKGLCQTGK 320
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 48/239 (20%)
Query: 96 GLCKDGFMMD---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
G+ + G++ D +RPDV T +++ D L K+GK+ EAN LLEVMIQR
Sbjct: 35 GIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQR----------- 83
Query: 153 LMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
GC D+ +Y+ LI G C + + +A L M G R DA TY TL
Sbjct: 84 ----------GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTL--- 130
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH------KCVLTIETCNCLIDGLC 266
+ GL + G + A+++ + N KC T+ + + +IDGLC
Sbjct: 131 --------------MKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 176
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K R A ++F M+ G+ PDV++Y +IHGFC G+ +KA L +M + G++P+
Sbjct: 177 KDRREDEARELFKE-MKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPD 234
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 42/207 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ TF+ LI LC EG+++EA L + + C PN +T+ TL A L
Sbjct: 707 PDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQL 766
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGM-----RPDVVTL 115
F +M + G C PDVVT ++ GLC+ G + D G +PDV++
Sbjct: 767 FMKM-QKLG--CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISY 823
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
+++ D L K G+ +EA L + M V PN +Y +L+ GF K
Sbjct: 824 SIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVD 883
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAV 188
G + + +Y+++I+G+CK+ ++ A+
Sbjct: 884 QGVQLNAVTYSVMIHGFCKEGQIDKAL 910
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 12/92 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P++++++ +I GLC GR EA LFK++ PNVI++ +L A
Sbjct: 816 FKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
+LF EMV++ GV + + VT + +I G CK+G
Sbjct: 876 HLFNEMVDQ-GV--QLNAVTYSVMIHGFCKEG 904
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 55/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S +LG+++ + P++VTF SL+ G C RI +A L + +PNV+ +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL +AL L EM + G+ DVVT ++ GLC G
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKK-GL--GADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
MM + + PDVVT + D K G ++EA L + MIQ V+PN TYN++++G
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR 296
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC +V +YN LI+G+CK R V++ + L + M EG AD TYNT
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L +M V PD + + GL NG + A+ F + +
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE 416
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ I N +I GLCK +++ AW++F L G+ PD TY IMI G CK G ++A
Sbjct: 417 KYIGIVAYNIMIHGLCKADKVEKAWELFCRL-PVEGVKPDARTYTIMILGLCKNGPRREA 475
Query: 311 NGLLLDMEETGL 322
+ L+ M+E G+
Sbjct: 476 DELIRRMKEEGI 487
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 138/355 (38%), Gaps = 52/355 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F L ++ S P++V F L+ R +K+ ++ ++ +F
Sbjct: 51 RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
L C+ C+ + L G MM G P +VT +
Sbjct: 111 IL--------------IHCFCR-----CSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
++ +A L+ +M++ PN YNTL+DG KG DV
Sbjct: 152 CLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADV 211
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN L+ G C DA + R+M+ I D T+ L
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++V P++ Y + I+GL +G + +A K F + + C + T N LI G CK
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F M G D+ TYN +IHG+C+ G+ + A + M + P+
Sbjct: 332 VDEGMKLFQR-MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 55/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S +LG+++ + P++VTF SL+ G C RI +A L + +PNV+ +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL +AL L EM + G+ DVVT ++ GLC G
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKK-GL--GADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
MM + + PDVVT + D K G ++EA L + MIQ V+PN TYN++++G
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR 296
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC +V +YN LI+G+CK R V++ + L + M EG AD TYNT
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L +M V PD + + GL NG + A+ F + +
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE 416
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ I N +I GLCK +++ AW++F L G+ PD TY IMI G CK G ++A
Sbjct: 417 KYIGIVAYNIMIHGLCKADKVEKAWELFCRL-PVEGVKPDARTYTIMILGLCKNGPRREA 475
Query: 311 NGLLLDMEETGL 322
+ L+ M+E G+
Sbjct: 476 DELIRRMKEEGI 487
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 172/363 (47%), Gaps = 51/363 (14%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL 71
G+++ F P++VT SL+ G C R EA L ++ F PNV+ +NT+ + L
Sbjct: 663 GKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTV-INGLCK 721
Query: 72 FEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
++ N V + D VT +I GL G M+ + + P+V+
Sbjct: 722 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 781
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------------- 160
+ D K+G + EA L + MI+R V PN TYN+L++GF
Sbjct: 782 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 841
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
SKGC DV +YN LI G+CK + VED + L EM +G+ DA TYNTL
Sbjct: 842 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 901
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M V PD Y +D L NG + +A+ + + + + I T N +I
Sbjct: 902 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 961
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ +LK AW +F L + G+ PD + Y MI G C++G ++A+ L M+E G
Sbjct: 962 QGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGF 1020
Query: 323 EPN 325
P+
Sbjct: 1021 MPS 1023
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 138/355 (38%), Gaps = 52/355 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F L ++ S P++V F L+ R +K+ ++ ++ +F
Sbjct: 51 RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
L C+ C+ + L G MM G P +VT +
Sbjct: 111 IL--------------IHCFCR-----CSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
++ +A L+ +M++ PN YNTL+DG KG DV
Sbjct: 152 CLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADV 211
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN L+ G C DA + R+M+ I D T+ L
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++V P++ Y + I+GL +G + +A K F + + C + T N LI G CK
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F M G D+ TYN +IHG+C+ G+ + A + M + P+
Sbjct: 332 VDEGMKLFQR-MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++ PN+ T+NSLI G C G + +A +F + C P+V+T+NTL
Sbjct: 801 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 860
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ LF EM + G++ D T +I G C+ G M+D G+ P
Sbjct: 861 KSKRVEDGMKLFCEMTYQ-GLV--GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSP 917
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW--- 159
D+VT N++ D L +GK+E+A ++E + + +++ + TYN ++ G AW
Sbjct: 918 DIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLF 977
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + D +Y +I+G C+ +A LCR M +G Y+
Sbjct: 978 RSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 119/274 (43%), Gaps = 53/274 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LL ++ PN++ F +LI EG +LEA L+K++ PNV T+
Sbjct: 758 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 817
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +F+ MV++ C PDVVT +I G CK DG
Sbjct: 818 NSLINGFCIHGCLGDAKYMFDLMVSKG---CFPDVVTYNTLITGFCKSKRVEDGMKLFCE 874
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M QG+ D T N + + GK+ A + M+ V+P+ TYN L+D K
Sbjct: 875 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 934
Query: 163 GCRH--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ +YNI+I G C+ +++A L R + +G++
Sbjct: 935 IEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK-------- 986
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
PD+ Y T I GL + G EA K+
Sbjct: 987 ---------PDAIAYITMISGLCRKGLQREADKL 1011
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/412 (31%), Positives = 193/412 (46%), Gaps = 92/412 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILE------------------- 41
+G+ + F +LG+IL + P+ +T N+L+KGLC +G + +
Sbjct: 58 LGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVS 117
Query: 42 ----------------AARLFKKLNVFCCDPNVITFNTL-------ALV--ALNLFEEMV 76
A +L + + PNV+ +NT+ LV A +L+ EM
Sbjct: 118 YGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM- 176
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDG 126
+ G+ PD +T T +I G C G +M + + P V N++ + L K+G
Sbjct: 177 DARGIF--PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEG 234
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++EA LL VM + + P TY+TLMDG+ A G +VYSYN
Sbjct: 235 NVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYN 294
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
I+ING CK + V++A++L REML + + D TYN+L M
Sbjct: 295 IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P D YT+ +D L KN + +A +F + T+ T LIDGLCK GRLK A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 414
Query: 275 WDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F H+L++ G DV TY +MI G CKEG +A + ME+ G PN
Sbjct: 415 QELFQHLLVK--GCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPN 464
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/398 (29%), Positives = 162/398 (40%), Gaps = 92/398 (23%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF- 72
+L+ TP ++ FN ++ L + L A L K++ V N +T N L +N F
Sbjct: 1 MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNIL----INCFC 56
Query: 73 --EEMVNEFGVICK-------PDVVTCTNIIDGLC----------------KDGFMM--- 104
+M F V+ K PD +T ++ GLC GF M
Sbjct: 57 HLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHV 116
Query: 105 --------------------------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
D+ RP+VV N + D L KD + EA L M
Sbjct: 117 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176
Query: 139 IQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNV 184
R + P+ TY TL+ GF K VY YNILIN CK+ NV
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A +L M EGI+ TY+TL M V P+ + Y
Sbjct: 237 KEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIM 296
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+GL K V EAM + + + V T N LIDGLCK GR+ A ++ + M + G
Sbjct: 297 INGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE-MHHRG 355
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
DVVTY ++ CK KA L + M+E G++P
Sbjct: 356 QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 393
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 155/346 (44%), Gaps = 71/346 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ G F LL +++ P + +N LI LC EG + EA
Sbjct: 198 LGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAK----------------- 240
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
NL M E G+ KP VVT + ++DG C G M+ G+ P
Sbjct: 241 ---------NLLAVMTKE-GI--KPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNP 288
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V + N+M + L K +++EA LL M+ +++ P+T TYN+L+DG
Sbjct: 289 NVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 348
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+G DV +Y L++ CK++N++ A +L +M GI+
Sbjct: 349 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ---------------- 392
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P + YT IDGL K G + A ++F + C + + T +I GLCK G A
Sbjct: 393 -PTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALA 451
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
I M++ G P+ VT+ I+I ++ ++ KA LL +M GL
Sbjct: 452 I-KSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 165 RHD--VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
RH + +N ++ K + A+SL ++M +GIRA+ T N L ++ +
Sbjct: 5 RHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFS 64
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
++ + + K G+ + + T N L+ GLC G +K + FH +
Sbjct: 65 FSV-LGKILKLGYQPDTI----------------TLNTLMKGLCLKGEVKKSLH-FHDKV 106
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G D V+Y +++G CK G+ + A LL +E+ PN
Sbjct: 107 VAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPN 149
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 176/360 (48%), Gaps = 56/360 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------AL 69
F P +VT+++LI GLC + + + +L +++ C PN +T+NTL AL+ A
Sbjct: 97 FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAF 156
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------FMMDQGMRPDVVTLNV 117
+L E+M C P+++T II GLCK+G FM++ G+ PDV+T N
Sbjct: 157 SLLEQMAANG---CPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNS 213
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ D L K+ ++ +A+ + + ++R PN TY+TL+DG + +K G
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
CR + +Y+ +++G K +EDAV + R+M G DA TYNTL
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M P YTT GL ++G EA+++ + C T + ++DGL
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 393
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK GR+ A F + ++ + P V+ Y+ +I G CK G+ +A L M G P+
Sbjct: 394 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 174/367 (47%), Gaps = 71/367 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR+ F LL ++ + P ++TF +IKGLC EG I A R+ ++ +
Sbjct: 150 GRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMI--------- 200
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
E G+ PDV+T +++DGLCK+ ++D +G RP+
Sbjct: 201 ----------------ESGL--SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
VVT + + D LSK KM+EA LL M++ NT TY+T++DG +
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
GC D +YN LI+G+ K + + +AV L REML G TY TL
Sbjct: 303 QMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSG 362
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETC 258
+MA P++ Y++ +DGL K G V EA+ F + + V +
Sbjct: 363 RFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAY 422
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ LIDGLCK G++ A++ +++ G PDVVT++I+I+G C G+ L M
Sbjct: 423 SALIDGLCKAGKIDEAYEFLERMIR-AGRIPDVVTFSILINGLCDAGRIDTGLELFRGMA 481
Query: 319 ETGLEPN 325
E G P+
Sbjct: 482 ERGCVPD 488
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 169/354 (47%), Gaps = 55/354 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L +++ P++VT+ +LI GL + R+ EA LF++ C P V+T+NT+
Sbjct: 14 AITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMID 73
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
AL L+++M FG +P VVT + +IDGLC+D M +G
Sbjct: 74 GLCKCGRIENALTLYDDMAIHFGF--RPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRG 131
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
P+ VT N + + L G+ +EA LLE M P T+ ++ G +
Sbjct: 132 CAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAF 191
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G DV ++N +++G CK++ + DA ++ + L G R + TY+TL
Sbjct: 192 RVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL-- 249
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
IDGL K + EA+++ + + C T + ++DGL K+GR+
Sbjct: 250 ---------------IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + M++ G PD VTYN +I GF K + ++A GLL +M E G P+
Sbjct: 295 EDAVVVLRQ-MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 55/359 (15%)
Query: 2 GRASGGFVLLGRILM--SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
G F ++ + M S +P+++TFNS++ GLC E RIL+A +FK+ C PNV+
Sbjct: 185 GEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVV 244
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
T++TL AL L +MV E G C+ + VT + ++DGL K G
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMV-ELG--CRANTVTYSTVVDGLLKVGRMEDAVVVL 301
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-- 158
M D G PD VT N + D K ++ EA LL M++ +P+ TY TL G
Sbjct: 302 RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 361
Query: 159 ------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
++GC + +Y+ +++G CK V +A+ +M + +
Sbjct: 362 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV------- 414
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V P Y+ IDGL K G + EA + + + + T + LI+GLC
Sbjct: 415 ---------VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ ++F M G PD+VTY ++ C+ + +A L M GL P+
Sbjct: 466 DAGRIDTGLELFRG-MAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 125/278 (44%), Gaps = 46/278 (16%)
Query: 93 IIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
+IDGLCK M+D+ + PDVVT + D L K +++EA L E +
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60
Query: 143 VNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNILINGYCKDRNVEDA 187
+P TYNT++DG + G R V +Y+ LI+G C+D V+
Sbjct: 61 CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
L EM G +A TYNTL MA N PP+ + I G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L K G + A +V + + L+ + T N ++DGLCK R+ A ++F ++ G
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER-GC 239
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY+ +I G K + +A LL M E G N
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN 277
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 56/328 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + LL +++ N VT+++++ GL GR+ +A + +++ C P+ +T
Sbjct: 256 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 315
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+NTL E V GL ++ M++ G P VVT +
Sbjct: 316 YNTLIDGFFKRQRLREAV-------------------GLLRE--MLEAGFHPSVVTYTTL 354
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDV 168
L + G+ +EA +L+ M R PN TY++++DG ++ K R +V
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414
Query: 169 Y-----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+Y+ LI+G CK +++A M+ G D T++ L
Sbjct: 415 VAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSIL-------------- 460
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I+GL G + +++F + CV + T L+D LC+ R+ A+D+F M+
Sbjct: 461 ---INGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQ-MR 516
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ GL+PD T MIHG + + + A
Sbjct: 517 SDGLSPDRSTRRTMIHGLLEVNRDEDAK 544
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 184/375 (49%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ F + V + +LI GLC G A L ++++ PNV+ +
Sbjct: 141 GQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMY 200
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+T+ A +L+ EMV++ G+ P+VVT + +I G G + D
Sbjct: 201 STIIDGMCKDKHVNDAFDLYSEMVSK-GI--SPNVVTYSALISGFFTVGQLKDAIDLFNK 257
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
+ ++PDV T N++ D KDGKM+E + +M+++ + PN TY +LMDG
Sbjct: 258 MILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE 317
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ +G D+ SYNILI+G+CK + V++A++L +EM + I D TYN+
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNS 377
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPPD Y++ +D L KN V +A+ + + + +
Sbjct: 378 LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG 437
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T LIDGLCK GRL+ A +IF L+ G V TY +MIHGFC +G +A
Sbjct: 438 IRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK-GYNITVNTYTVMIHGFCNKGLFDEA 496
Query: 311 NGLLLDMEETGLEPN 325
LL M++ P+
Sbjct: 497 LALLSKMKDNSCIPD 511
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 51/327 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++++ P++ TFN L+ G C +G++ E +F + PNV+T
Sbjct: 245 VGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 304
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+ +L + L +E + K + T M +G+ PD+ + N++ D
Sbjct: 305 YCSL-MDGYCLVKE-------VNKAKSILYT-----------MSQRGVNPDIQSYNILID 345
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K K++EA L + M + + P+ TYN+L+DG K G
Sbjct: 346 GFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPP 405
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+ +Y+ +++ CK+ V+ A++L ++ +GIR P+ + YT
Sbjct: 406 DIITYSSILDALCKNHQVDKAIALLTKLKDQGIR-----------------PNMYTYTIL 448
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
IDGL K G + +A +F + +T+ T +I G C G A + + N
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSC 508
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ PD VTY I+I + ++ KA L
Sbjct: 509 I-PDAVTYEIIIRSLFDKDENDKAEKL 534
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 26/253 (10%)
Query: 92 NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
+++D ++ Q P + N + +L K L + M +NP +
Sbjct: 56 DVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQ 115
Query: 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G + ++ LI G C + A+ +++ G + D Y TL
Sbjct: 116 -----HPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIH 170
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ N V P+ +Y+T IDG+ K+ V +A ++S + +
Sbjct: 171 GLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISP 230
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T + LI G +G+LK A D+F+ M+++N + PDV T+NI++ GFCK+G+ ++
Sbjct: 231 NVVTYSALISGFFTVGQLKDAIDLFNKMILEN--IKPDVYTFNILVDGFCKDGKMKEGKT 288
Query: 313 LLLDMEETGLEPN 325
+ M + G++PN
Sbjct: 289 VFAMMMKQGIKPN 301
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 183/363 (50%), Gaps = 55/363 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------L 64
++ F + V++ +LI GLC G A ++ +K++ PNV+ +NT L
Sbjct: 160 VIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKL 219
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
+ A +L EM+ + PDVVT T +I G G M+ + ++PDV T
Sbjct: 220 VIHASDLCSEMIVKR---IFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYT 276
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N++ D L K+G+M++A +L VMI++ V+ N TYN+LMDG+
Sbjct: 277 FNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMA 336
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+G DV SY+I+ING CK + V++AV+L +EM S+ + + TYN+L
Sbjct: 337 RRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRIS 396
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M P D Y++ +D L KN V +A+ + + I + I T L+
Sbjct: 397 DAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILV 456
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DGLCK GRLK A ++ L+ G DV YN+M++G CKEG +A L+ ME+ G
Sbjct: 457 DGLCKNGRLKDAQAVYQDLLIK-GYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGC 515
Query: 323 EPN 325
P+
Sbjct: 516 IPD 518
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 163/383 (42%), Gaps = 84/383 (21%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNL-FEEMVNEF 79
FN ++ L A K++ + P++ TFN L L LN F + F
Sbjct: 67 FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126
Query: 80 GVICKPDVVTCTNIIDGLC----------------KDGFMMDQG---------------- 107
+ PD VT T +I GLC GF +DQ
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186
Query: 108 -------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
++P+VV N + D+L KD + A+ L MI + + P+ TY TL+
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLI 246
Query: 155 DG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
G K + DVY++NIL++G CK+ ++ A ++ M+ +G+
Sbjct: 247 YGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVD 306
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
++ TYN+L MA V PD Y+ I+GL K V EA+ +
Sbjct: 307 SNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNL 366
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F + + T N LIDGL K GR+ AWD+ + M N G DV+TY+ ++ C
Sbjct: 367 FKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNE-MHNRGQPADVITYSSLLDALC 425
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K Q KA L+ +++ G++PN
Sbjct: 426 KNHQVDKAITLITKIKDQGIQPN 448
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 51/335 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L ++L+ P++ TFN L+ GLC EG + +A + + D N++T
Sbjct: 252 VGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVT 311
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N+L M F V + N M +G+ PDV + ++M +
Sbjct: 312 YNSL----------MDGYFLVKQENKATFVFNT---------MARRGVTPDVQSYSIMIN 352
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRH 166
L K ++EA L + M + + PNT TYN+L+DG AW ++G
Sbjct: 353 GLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPA 412
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV +Y+ L++ CK+ V+ A++L ++ +GI+ P+ + YT
Sbjct: 413 DVITYSSLLDALCKNHQVDKAITLITKIKDQGIQ-----------------PNIYTYTIL 455
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL KNG + +A V+ + L ++ N +++GLCK G A + M++ G
Sbjct: 456 VDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSK-MEDNG 514
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
PD VTY ++ + ++ KA LL +M G
Sbjct: 515 CIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 125/254 (49%), Gaps = 33/254 (12%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
TP++ +++ +I GLC + EA LFK+++ PN +T+N+L L+ +
Sbjct: 341 TPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWD 400
Query: 75 MVNEFGVICKP-DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+VNE +P DV+T ++++D LCK+ + DQG++P++ T ++ D L
Sbjct: 401 LVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLC 460
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVY 169
K+G++++A + + ++ + + + YN +++G + SK GC D
Sbjct: 461 KNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAV 520
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT-TYNTLFMAINNVPPDSHVYTTYID 228
+Y L+ ++ + AV L REM+ +G + + N++ P S +I
Sbjct: 521 TYETLVRALFENDKNDKAVKLLREMIVQGSAVGSNISSNSMLCVYQAAPLASFGVFWFIF 580
Query: 229 GLYKNGFVLEAMKV 242
GL G L+A K+
Sbjct: 581 GLASLG--LDAFKI 592
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 23/157 (14%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAIN 214
++ +N +++ K + A+S ++M + I+ D T+N L F +
Sbjct: 64 IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLA 123
Query: 215 NV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ PD+ TT I GL NG V EA+ + L + LI+GLCK G
Sbjct: 124 KIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTG 183
Query: 270 RLKIAWDIFHMLMQNPGL--TPDVVTYNIMIHGFCKE 304
+ A + L + GL P+VV YN +I CK+
Sbjct: 184 ETRAALQV---LRKIDGLLVQPNVVMYNTIIDSLCKD 217
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 168/354 (47%), Gaps = 49/354 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR V + +C P+++T+ L+ LC RI +A+ + + + C PNV+T+
Sbjct: 216 GRVDSALVHYRDMQRNC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 274
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MMD 105
NTL L +E V F + C PDV T +IDG CK DG M+
Sbjct: 275 NTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 334
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
G P+ +T N + D+L K GK +A L ++M++RD P+ T+N ++D F
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDL 394
Query: 159 -------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+GC D+Y+YNI+I+G C+ ++DA L M G
Sbjct: 395 AYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG------------- 441
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PPD Y + + GL K V EA +V+ + N L + TC+ LIDGLCK RL
Sbjct: 442 ----CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRL 497
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + + +N G PDVV Y I+IHGFCK Q K+ +M + G P
Sbjct: 498 DDAEKLLREMERN-GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 550
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 176/411 (42%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL ++L + +P++ T+N LI G C + R + A+L +++ + C+PN IT
Sbjct: 284 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 343
Query: 61 FNTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+NTL +LV A NL + M+ CKP T +ID CK G
Sbjct: 344 YNTLMDSLVKSGKYIDAFNLAQMMLRR---DCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 400
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M D+G PD+ T N+M + ++++A LLE M + P+ TYN+++ G S
Sbjct: 401 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 460
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G DV + + LI+G CK R ++DA L REM G D Y
Sbjct: 461 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 520
Query: 208 TLF-----------------------------------------------------MAIN 214
L M
Sbjct: 521 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 580
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
V PD+ VYT+ IDGL K+ EA +++ + C T+ T N L+D LCK+ RL A
Sbjct: 581 GVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEA 640
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +M++ G PD VTYN + GF K +H KA L M+ G P
Sbjct: 641 IHLLE-VMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPT 690
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 157/339 (46%), Gaps = 53/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+ + T N L+ + + EA LFK C P+ IT++TL A
Sbjct: 128 YKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAY 187
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTD 120
L +EM + G++ P II GLC +G + M + P V+T ++ D
Sbjct: 188 RLLDEM-EKRGIV--PHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVD 244
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K ++ +A+ +LE MI+ PN TYNTL++GF C
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSP 304
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV++YNILI+GYCK +D L +EM+ G + TYNTL
Sbjct: 305 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL----------------- 347
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+D L K+G ++A + + C + T N +ID CK+G+L +A+++F LM + G
Sbjct: 348 MDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LMTDRG 406
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+ TYNIMI G C+ + A LL M E G P+
Sbjct: 407 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPD 445
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 82/328 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N +I G C RI +A +L +++ C P+V+T+N++ L + +E
Sbjct: 409 PDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468
Query: 79 FGVICKP----DVVTCTNIIDGLCKD------------------------------GF-- 102
+ V+ DVVTC+ +IDGLCK GF
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528
Query: 103 -------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+D+G P V+T +++ D L K ++ + LL+ M++R V P+
Sbjct: 529 ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIV 588
Query: 150 YNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y +++DG GC V +YN+L++ CK +++A+ L M
Sbjct: 589 YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVME 648
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S+G D TYN++F DG +K+ +A ++F A+ + C T
Sbjct: 649 SDGCLPDTVTYNSVF-----------------DGFWKSAEHDKAFRLFQAMKSRGCSPTP 691
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ L+ L ++ A +I+ ++
Sbjct: 692 FMYSLLLTKLVAEEKMDQAMEIWEEALE 719
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 36/223 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALN 70
P++V + LI G C ++ ++ F ++ C P VIT++ + A V
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
L + M+ E GV PD + T++IDGLCK M G P VVT NV+ D
Sbjct: 573 LLKTML-ERGVT--PDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVD 629
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K +++EA LLEVM P+T TYN++ DGF A S+GC
Sbjct: 630 KLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSP 689
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ Y++L+ + ++ A+ + E L G D TL
Sbjct: 690 TPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 170 bits (430), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 184/375 (49%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + +L F N VT+ LI GLC G+ A ++ +++ + NV+ +
Sbjct: 137 GKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMY 196
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF----- 102
+T L A L+ EM+ + P VVT +++I G C KD F
Sbjct: 197 STIIDGLCKDKLVTDAYGLYSEMIVKR---IPPTVVTFSSLIYGFCIVGKFKDAFRLFNE 253
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + + PD T N++ D L K+GK++EA ++ VM++ V P TYNTLMDG+ ++
Sbjct: 254 MVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNE 313
Query: 163 --GCRH------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+H + SYNI+ING+CK + V++A+ L EM GI TYN+
Sbjct: 314 VGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNS 373
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N +P D Y + ID KN V +A+ + I H
Sbjct: 374 LIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHG 433
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T N LIDGLCK G+LK A D+F L+ G + TYNIMI+G CKEG +A
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIK-GYNVNAWTYNIMINGLCKEGLFDEA 492
Query: 311 NGLLLDMEETGLEPN 325
LL ME+ G+ P+
Sbjct: 493 EVLLSKMEDNGIIPD 507
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 153/331 (46%), Gaps = 51/331 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L ++M P+ TFN L+ LC EG+I EA + + +P V+T
Sbjct: 241 VGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVT 300
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL +VNE G +II + + P+ + N+M +
Sbjct: 301 YNTLMDGYC-----LVNEVG-----KAKHVLSIISRM---------RVAPNSRSYNIMIN 341
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------FAWWSKGCRH------ 166
K ++EA CL M R + P+ TYN+L+DG +AW H
Sbjct: 342 GFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPA 401
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+ +YN LI+ +CK+++V+ A++L +++ GI+ + TYN L
Sbjct: 402 DIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNIL----------------- 444
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
IDGL K G + A VF + + T N +I+GLCK G A ++ M++ G
Sbjct: 445 IDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEA-EVLLSKMEDNG 503
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ PD VTY +I + +++KA LL +M
Sbjct: 504 IIPDAVTYETIIQALFHKDENEKAQKLLREM 534
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 156/382 (40%), Gaps = 83/382 (21%)
Query: 20 TPNMVTFNSLIKGLC-TEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
TP++V FN ++ L T+ L ++ P++ T + L +L +M
Sbjct: 63 TPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHL-GQMTFA 121
Query: 79 FGVICKP-DVVTCTN--IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
F V K + C N + + L ++ G + VT ++ + L K G+ A +L
Sbjct: 122 FSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVL 181
Query: 136 EVMIQRDVNPNTCTYNTLMDG----------FAWWS------------------------ 161
+ + VN N Y+T++DG + +S
Sbjct: 182 RQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIV 241
Query: 162 ---------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
K D Y++NIL++ CK+ +++A ++ M+ EG+ TY
Sbjct: 242 GKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTY 301
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF----- 243
NTL ++ V P+S Y I+G K V EA+ +F
Sbjct: 302 NTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCC 361
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
I HK T N LIDGLCK GR+ AW++ M N + D+VTYN +I FCK
Sbjct: 362 RGIAPHKV-----TYNSLIDGLCKAGRIPYAWELVDE-MHNNCIPADIVTYNSLIDVFCK 415
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
KA L+ ++E G++PN
Sbjct: 416 NQHVDKAIALVKKIKEHGIQPN 437
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 53/266 (19%)
Query: 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGFA 158
+GF++D V++ N M + + + E N +L +I+ ++ P + +T M+
Sbjct: 43 NGFVVDNA----VLSFNRMRQ-IRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQME--- 94
Query: 159 WWSKGCRHDVYSYNILINGYCK---------------------DRNVEDAVSLCREMLSE 197
SKG + D+++ +ILIN YC + V +A+ +L+
Sbjct: 95 --SKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLAL 152
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
G + TY L + V + +Y+T IDGL K+ V +A
Sbjct: 153 GFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDA 212
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMI 298
++S + + T+ T + LI G C +G+ K A+ +F M+M+N + PD T+NI++
Sbjct: 213 YGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN--INPDAYTFNILV 270
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
CKEG+ ++A ++ M + G+EP
Sbjct: 271 DALCKEGKIKEAKNVIAVMMKEGVEP 296
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 167/353 (47%), Gaps = 49/353 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR V + C P+++T+ L+ LC RI +A+ + + + C PNV+T+
Sbjct: 82 GRVDSALVHYRDMQRHC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTY 140
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MMD 105
NTL L +E V F + C PDV T +IDG CK DG M+
Sbjct: 141 NTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 200
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
G P+ +T N + D+L K GK +A L ++M++RD P+ T+N ++D F
Sbjct: 201 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDL 260
Query: 159 -------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+GC D+Y+YNI+I+G C+ ++DA L M G
Sbjct: 261 AYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG------------- 307
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PPD Y + + GL K V EA +V+ + N L + TC+ LIDGLCK RL
Sbjct: 308 ----CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRL 363
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + + +N G PDVV Y I+IHGFCK Q K+ +M + G P
Sbjct: 364 DDAEKLLREMERN-GSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 415
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 154/331 (46%), Gaps = 53/331 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVN 77
N L+ + + EA LFK C P+ IT++TL A L +EM
Sbjct: 2 NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM-E 60
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDNLSKDGKM 128
+ G++ P II GLC +G + M + P V+T ++ D L K ++
Sbjct: 61 KRGIV--PHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARI 118
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+A+ +LE MI+ PN TYNTL++GF C DV++YNIL
Sbjct: 119 SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNIL 178
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYCK +D L +EM+ G + TYNTL +D L K+G
Sbjct: 179 IDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTL-----------------MDSLVKSG 221
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
++A + + C + T N +ID CK+G+L +A+++F LM + G PD+ TY
Sbjct: 222 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ-LMTDRGCLPDIYTY 280
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NIMI G C+ + A LL M E G P+
Sbjct: 281 NIMISGACRANRIDDARQLLERMTEAGCPPD 311
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 158/352 (44%), Gaps = 55/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
+ LL + P+ +N++IKGLC GR+ A ++ + C P+VIT+ L
Sbjct: 52 AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCA-PSVITYTILVD 110
Query: 67 V---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A + E+M+ E G C P+VVT +I+G CK G M++
Sbjct: 111 ALCKSARISDASLILEDMI-EAG--CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS 167
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
PDV T N++ D K + ++ LL+ M++ PN TYNTLMD K
Sbjct: 168 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAF 227
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
C+ +++N++I+ +CK ++ A L + M G D TYN +
Sbjct: 228 NLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM---- 283
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I G + + +A ++ + C + T N ++ GLCK ++
Sbjct: 284 -------------ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDE 330
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A++++ +L +N G DVVT + +I G CK + A LL +ME G P+
Sbjct: 331 AYEVYEVL-RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPD 381
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 142/305 (46%), Gaps = 53/305 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL ++L + +P++ T+N LI G C + R + A+L +++ + C+PN IT
Sbjct: 150 LGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFIT 209
Query: 61 FNTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+NTL +LV A NL + M+ CKP T +ID CK G
Sbjct: 210 YNTLMDSLVKSGKYIDAFNLAQMMLRR---DCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 266
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M D+G PD+ T N+M + ++++A LLE M + P+ TYN+++ G S
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKAS 326
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G DV + + LI+G CK R ++DA L REM G
Sbjct: 327 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG--------- 377
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD YT I G K + +++ FS + + CV T+ T + +ID LCK
Sbjct: 378 --------SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCK 429
Query: 268 IGRLK 272
R++
Sbjct: 430 SARVR 434
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L +L P+ TFN +I C G++ A LF+ + C P++ T+
Sbjct: 221 GKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 280
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + A L E M E G C PDVVT +I+ GLCK
Sbjct: 281 NIMISGACRANRIDDARQLLERMT-EAG--CPPDVVTYNSIVSGLCKASQVDEAYEVYEV 337
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ + G DVVT + + D L K ++++A LL M + P+ Y L+ GF
Sbjct: 338 LRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQ 397
Query: 158 -----AWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
A++S KGC V +Y+I+I+ CK V D L + ML G+
Sbjct: 398 LDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 258 CNCLIDGLCKIGRLKIAWDIF--HMLMQNPGL-TPDVVTYNIMIHGFCKEGQHQKANGLL 314
CNCL+ + + + A+D+F H+ GL +PD +TY+ +I+GFCK Q+A LL
Sbjct: 1 CNCLLSAFVRKKKAQEAYDLFKNHLC----GLCSPDSITYSTLINGFCKARDFQQAYRLL 56
Query: 315 LDMEETGLEPN 325
+ME+ G+ P+
Sbjct: 57 DEMEKRGIVPH 67
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 186/425 (43%), Gaps = 109/425 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F P++VT+ +LI GLC G A RL + C PNV +
Sbjct: 145 GKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 204
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A NLF EMV + G+ PD+ T ++I LC
Sbjct: 205 NTIIDSLCKDRQVTEAFNLFSEMVTK-GI--SPDIFTYNSLIHALCNLCEWKHVATLLNE 261
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+D + PDVV+ N + D L K+GK+ EA+ +++ MIQR V PN TY LMDG S
Sbjct: 262 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSE 321
Query: 162 -------------KGCRHDVYSYNILINGYCKDR-------------------NVEDAVS 189
KGC +V SYN LINGYCK + N+++AV
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVK 381
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG-- 229
+ M+ +G + +YNTL M + PD+ Y+T I G
Sbjct: 382 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441
Query: 230 ---------------------------------LYKNGFVLEAMKVFSAIGNHKCVLTIE 256
L KN ++ EAM + AI I+
Sbjct: 442 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 501
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
N IDG+C+ G L+ A D+F L + GL PDV TY+IMI+G C+ G +A+ L +
Sbjct: 502 VNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEASKLFRE 560
Query: 317 MEETG 321
M+E G
Sbjct: 561 MDENG 565
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 117/428 (27%), Positives = 181/428 (42%), Gaps = 105/428 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S LLG ++ PN+ +N++I LC + ++ EA LF ++ P++ T
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238
Query: 61 FNTLALVALNLFE-----EMVNEFGVICK--PDVVTCTNIIDGLCKDGF----------M 103
+N+L NL E ++NE V K PDVV+ ++D LCK+G M
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEM-VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKM 297
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-- 161
+ +G+ P+VVT + D +M+EA + + M+ + PN +YNTL++G+
Sbjct: 298 IQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRI 357
Query: 162 -------------------------------KGCRHDVYSYNILINGYCKDRNVEDAVSL 190
KGC +V SYN LINGYCK + ++ A+ L
Sbjct: 358 DKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYL 417
Query: 191 CREMLSEGIRADATTYNTLFMAINNVP------------------PDSHVYTTYIDGLYK 232
EM + + D TY+TL + +V P+ Y +D L K
Sbjct: 418 FGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCK 477
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
N ++ EAM + AI I+ N IDG+C+ G L+ A D+F L + GL PDV
Sbjct: 478 NRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNL-SSKGLQPDVW 536
Query: 293 TYNIMI-----------------------------------HGFCKEGQHQKANGLLLDM 317
TY+IMI GF + + +A LL +M
Sbjct: 537 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 596
Query: 318 EETGLEPN 325
G +
Sbjct: 597 VARGFSAD 604
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 145/339 (42%), Gaps = 56/339 (16%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
G R+L P+ V FN L+ + L +++ F PN+ T + L
Sbjct: 44 GAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILI 103
Query: 65 -ALVALN----LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ LN F + + +PD T T +I G+C +G M+ +G R
Sbjct: 104 NSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFR 163
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVVT + + L K G A LL M+Q++ PN V+
Sbjct: 164 PDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPN---------------------VF 202
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+YN +I+ CKDR V +A +L EM+++GI D TYN+L A+ N
Sbjct: 203 AYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM 262
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD + T +D L K G V EA V + + T L+DG C + +
Sbjct: 263 VDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEM 322
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A +F M G P+V++YN +I+G+CK + KA
Sbjct: 323 DEAVKVFDT-MVCKGCMPNVISYNTLINGYCKIQRIDKA 360
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 32/233 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ P++ TL+++ ++ ++ A +L +++ P+T T+ TL+ G K
Sbjct: 91 GIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEA 150
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G R DV +Y LING CK N A+ L M+ +
Sbjct: 151 LHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQK--------------- 195
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N P+ Y T ID L K+ V EA +FS + I T N LI LC + K
Sbjct: 196 --NCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWK 253
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M + + PDVV++N ++ CKEG+ +A+ ++ M + G+EPN
Sbjct: 254 HVATLLNE-MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPN 305
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 50/233 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L G + P+ VT+++LI GLC R+ +A LF ++ PN++T+
Sbjct: 410 RIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 469
Query: 63 TL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------- 103
L A+ L E G PD+ IDG+C+ G +
Sbjct: 470 ILLDYLCKNRYLAEAMALLKAIE------GSNLDPDIQVNNIAIDGMCRAGELEAARDLF 523
Query: 104 ---MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+G++PDV T ++M + L + G ++EA+ L M + N C YNT+ GF
Sbjct: 524 SNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF--- 580
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
++ A+ L +EM++ G ADA+T TLF+ +
Sbjct: 581 ------------------LRNNETSRAIQLLQEMVARGFSADASTM-TLFVKM 614
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 41/253 (16%)
Query: 92 NIIDGLCKD-GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
N IDG M+ P V N + L+ KM+ + LL + Q
Sbjct: 40 NTIDGAISSFNRMLRMQPPPSTVDFNKL---LTSIAKMKHHSTLLSLSHQ---------- 86
Query: 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
MD F G ++Y+ +ILIN +C V A S+ ++L G + D T+ TL
Sbjct: 87 ---MDSF-----GIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLI 138
Query: 211 MAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
I PD Y T I+GL K G A+++ ++ C
Sbjct: 139 RGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ 198
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ N +ID LCK ++ A+++F M G++PD+ TYN +IH C + +
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSE-MVTKGISPDIFTYNSLIHALCNLCEWKHVAT 257
Query: 313 LLLDMEETGLEPN 325
LL +M ++ + P+
Sbjct: 258 LLNEMVDSKIMPD 270
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 181/358 (50%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F + V++ +LI GLC G A ++ KK+ + +V+ +N + A
Sbjct: 160 FHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAY 219
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMT 119
L+ EM+ + PDVVT ++I G C K+ F M+ + + PDV T +++
Sbjct: 220 QLYSEMITKR---ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILV 276
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSK-GCR 165
D L KDG + A +L VM+++ V P+ TY++LMDG F+ S+ G
Sbjct: 277 DALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVA 336
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+SYNI+ING K + V++A+SL +EM +GI D TYN+L
Sbjct: 337 PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQL 396
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M N +P D Y + ID L KN + +A+ + I + ++ T N LIDGLCK
Sbjct: 397 VDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCK 456
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRLK A D+F L+ G + + TYNIMI+G CKEG +A LL ME G+ P+
Sbjct: 457 GGRLKNAQDVFQDLLIK-GYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPD 513
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 174/352 (49%), Gaps = 54/352 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
S + L ++ +P++VTFNSLI G C G++ EA LF ++ + +P+V TF+
Sbjct: 215 VSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSI 274
Query: 64 LA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MM 104
L A N+ M+ + GVI PDVVT ++++DG C K F M
Sbjct: 275 LVDALCKDGNITRAKNMLAVMMKQ-GVI--PDVVTYSSLMDGYCLVNEVNKAKHVFSTMS 331
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
G+ P + N+M + L K ++EA L + M + + P+T TYN+L+DG
Sbjct: 332 RLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRIS 391
Query: 157 FAWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+AW + G D+ +YN LI+ CK+ +++ A++L +++ +GI+ TYN L
Sbjct: 392 YAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNIL- 450
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
IDGL K G + A VF + + T N +I+GLCK G
Sbjct: 451 ----------------IDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGL 494
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A ++ M+N G+ PD VTY +I ++ +++KA LL +M GL
Sbjct: 495 FNEA-EVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 34/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G+ P +VT N++ + G+M A + +++ +P T T+NTL++G K
Sbjct: 88 KGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKE 147
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G D SY LING CK A+ + +++ + + D YN +
Sbjct: 148 ALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNII-- 205
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I+ L K+ V +A +++S + + + T N LI G C +G+L
Sbjct: 206 ---------------INSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQL 250
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A+ +FH M+++N + PDV T++I++ CK+G +A +L M + G+ P+
Sbjct: 251 KEAFGLFHEMVLKN--INPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPD 303
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 60/209 (28%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR S + L+ + + +++T+NSLI LC I +A L KK+ P++ T
Sbjct: 387 LGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYT 446
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
+N L IDGLCK G + + +G
Sbjct: 447 YNIL-----------------------------IDGLCKGGRLKNAQDVFQDLLIKGYSV 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ T N+M + L K+G EA LL M + P+ TY T++
Sbjct: 478 NAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRAL------------- 524
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ KD N E A L REM+ G+
Sbjct: 525 -------FRKDEN-EKAEKLLREMIIRGL 545
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 184/364 (50%), Gaps = 55/364 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
+++ F N V + +LI GLC G+ A +L ++++ PNV+ +NT+
Sbjct: 151 KVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVK 210
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
LV A +L+ EMV++ G+ PDVVT + +I G C G M+ + + PDV
Sbjct: 211 LVNEAFDLYSEMVSK-GI--SPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVY 267
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T +++ D K+G+++EA +L +M+++ + P+ TY +LMDG+ +
Sbjct: 268 TFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTM 327
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
G +V SYNI+ING+CK + V++A++L +EM + I D TYN+L
Sbjct: 328 AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKI 387
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M VP D Y + +D L KN V +A+ + + + + + T L
Sbjct: 388 SYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTIL 447
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDGLCK GRLK A +IF L+ G V TY +MI GFC KA LL ME+ G
Sbjct: 448 IDGLCKGGRLKDAQNIFEDLLVK-GYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNG 506
Query: 322 LEPN 325
PN
Sbjct: 507 CIPN 510
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 120/284 (42%), Gaps = 77/284 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L +++ P++ TF+ L+ G C EGR+ EA + + P+V+T
Sbjct: 244 LGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVT 303
Query: 61 --------------------FNTLAL------------------------VALNLFEEMV 76
FNT+A A+NLF+EM
Sbjct: 304 YCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMH 363
Query: 77 NEFGVICK---PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
CK PDVVT ++IDGLCK G M D+G+ D +T N + D L
Sbjct: 364 ------CKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALC 417
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K+ ++++A LL M + P+ TY L+DG KG VY
Sbjct: 418 KNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVY 477
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+Y ++I G+C + + A++L +M G +A TY + +++
Sbjct: 478 TYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSL 521
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 121/283 (42%), Gaps = 40/283 (14%)
Query: 78 EFGVICKPDV-VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
EFG I V + C L ++ M G+ D+VT N++ + S+ G + +
Sbjct: 58 EFGKILGSLVKINCYQTAISLHRE--MEFNGIASDLVTFNILINCFSQLGHTHFSFSVFA 115
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------------YNILINGYCK 180
++++ PN T TL+ G KG H Y LING CK
Sbjct: 116 NILKKGYEPNAITLTTLIKGLCL--KGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
A+ L R + + ++ + YNT+ M + PD
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+ I G G + +A+ +F+ + + + + T + L+DG CK GR+K A ++ M+M
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMM 293
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ PDVVTY ++ G+C Q KA + M + G+ N
Sbjct: 294 KQ-GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTAN 335
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 38/214 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
T N+ ++N +I G C ++ EA LFK+++ P+V+T+N+L AL
Sbjct: 333 TANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALK 392
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM ++ GV D +T +I+D LCK+ M D+G++PD+ T ++ D
Sbjct: 393 LVDEM-HDRGV--PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILID 449
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRH 166
L K G++++A + E ++ + N TY ++ GF A SK GC
Sbjct: 450 GLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIP 509
Query: 167 DVYSYNILI-NGYCKDRNVEDAVSLCREMLSEGI 199
+ +Y I+I + + KD N + A L REM++ G+
Sbjct: 510 NAKTYEIIILSLFEKDEN-DMAEKLLREMIARGL 542
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAIN 214
++ + ++ K + A+SL REM GI +D T+N L F
Sbjct: 56 IFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFA 115
Query: 215 NV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLC 266
N+ P++ TT I GL G + +A+ A+G H L LI+GLC
Sbjct: 116 NILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFH---LNKVCYGTLINGLC 172
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+G+ A + + + P+VV YN +I CK +A L +M G+ P+
Sbjct: 173 KVGQTSAALQLLRRV-DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 230
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 188/375 (50%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F+ +++ F + +++ +LI GLC G A L ++++ PNV+ +
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NT+ LV A +LF EM+++ G+ PDVVT + +I G C G + D
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMISK-GI--SPDVVTYSALISGFCILGKLNDAIDLFNK 285
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ ++PDV T N++ + KDGKM+E + ++M+++ + PN TYN+LMDG+ +
Sbjct: 286 MILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ SY+I+ING+CK + ++A++L +EM + I D TY++
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP Y + +D L K V +A+ + + + +
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + LI GLC+ G+L+ A +F L+ G +V TY IMI GFC EG +A
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK-GHNLNVDTYTIMIQGFCVEGLFNEA 524
Query: 311 NGLLLDMEETGLEPN 325
LL ME+ G P+
Sbjct: 525 LALLSKMEDNGCIPD 539
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 160/355 (45%), Gaps = 53/355 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
PN+V N LI C G I A +F K+ P+ ITF TL + LF
Sbjct: 118 PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLF 177
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG---FMMDQGMR-------PDVVTLNVMTDNL 122
+ V G D ++ +I GLCK G +D R P+VV N + D++
Sbjct: 178 HDKVVALGF--HFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSM 235
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K + EA L MI + ++P+ TY+ L+ GF K + DV
Sbjct: 236 CKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDV 295
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
Y++NIL+N +CKD +++ ++ M+ +GI+ + TYN+L
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
MA V PD Y+ I+G K EAM +F + + + T + LIDGL K GR
Sbjct: 356 MAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR 415
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + M + G+ P + TYN ++ CK Q KA LL +++ G++PN
Sbjct: 416 ISYALQLVDQ-MHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPN 469
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 154/343 (44%), Gaps = 61/343 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L ++++ P++ TFN L+ C +G++ E +F + PN +T
Sbjct: 273 LGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVT 332
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF-------- 102
+N+L LV A ++F M + GV PD+ + + +I+G CK F
Sbjct: 333 YNSLMDGYCLVKEVNKAKSIFNTMA-QGGV--NPDIQSYSIMINGFCKIKKFDEAMNLFK 389
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + + PDVVT + + D LSK G++ A L++ M R V P TYN+++D
Sbjct: 390 EMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL---- 445
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
CK V+ A++L ++ +GI+ + TY+ L
Sbjct: 446 -----------------CKIHQVDKAIALLTKLKDKGIQPNMYTYSIL------------ 476
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
I GL ++G + +A KVF + L ++T +I G C G A +
Sbjct: 477 -----IKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSK- 530
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M++ G PD TY I+I K+ ++ A LL +M G+ P
Sbjct: 531 MEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 34/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G++P++V N++ + + G + A + +++ P+T T+ TL+ G
Sbjct: 114 RGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQ 173
Query: 157 -FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
F + K G D SY LI+G CK A+ L + R D
Sbjct: 174 AFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQ-------RVDG-------- 218
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N V P+ +Y T ID + K V EA +FS + + + T + LI G C +G+L
Sbjct: 219 --NLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+F+ M+++N + PDV T+NI+++ FCK+G+ ++ + M + G++PN
Sbjct: 277 NDAIDLFNKMILEN--IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPN 329
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 19/174 (10%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
SY+ + + +V+DAVSL +L A +N + M
Sbjct: 52 SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P+ I+ + G + A VF+ I V T LI GLC G++
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQI 171
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +FH + G D ++Y +IHG CK G+ + A LL ++ ++PN
Sbjct: 172 QQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 194/411 (47%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAA----------------- 43
M + F ++ +IL + P+ +TFN+LIKGLC G++ EA
Sbjct: 116 MAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFS 175
Query: 44 ------------------RLFKKLNVFCCDPNVITFNT---------LALVALNLFEEMV 76
++ +K++ NV+ +NT L + A L+ +M+
Sbjct: 176 YGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMI 235
Query: 77 NEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSKDG 126
+ PDVVT + +I G C ++ F M+ + + PD T N++ D L K+G
Sbjct: 236 AK---KISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEG 292
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
++ A +L VM++ V PN TY++LMDG+ ++ G + +SY
Sbjct: 293 NLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYC 352
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
+ING+CK + V++A+SL +M +GI D TYN+L M N
Sbjct: 353 TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDN 412
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P + Y ID L KN V +A+ + I + + T N LI GLCK+GRLK A
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L+ + G + + TYNIM++G CKEG +A LL M++ G+ P+
Sbjct: 473 QDVFQDLL-SKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPD 522
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
G+ PD+ T N++ + +M A ++ +++ P+T T+NTL+ G K
Sbjct: 97 HGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKE 156
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G D +SY LING CK A+ + R++ + ++ + YNT+
Sbjct: 157 ALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTI-- 214
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
ID L K+ V++A +++S + K + T + LI G C +G+L
Sbjct: 215 ---------------IDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQL 259
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F M+++N + PD T+NI++ CKEG + A +L+ M + G+ PN
Sbjct: 260 EEAFGLFREMVLKN--INPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPN 312
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +L ++ PN+VT++SL+ G C ++ +A + ++ PN ++
Sbjct: 292 GNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSY 351
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
T+ +V AL+LF +M +F I PD VT ++IDGLCK G
Sbjct: 352 CTMINGFCKIKMVDEALSLFNDM--QFKGIA-PDKVTYNSLIDGLCKSGRISYAWELVDE 408
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M D G ++ T N + D L K+ +++A L++ + + + P+ T+N L+ G
Sbjct: 409 MHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGR 468
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG + ++YNI++NG CK+ ++A +L +M GI DA TY T
Sbjct: 469 LKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYET 528
Query: 209 LFMAI 213
L A+
Sbjct: 529 LIQAL 533
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 84/215 (39%), Gaps = 60/215 (27%)
Query: 168 VYSYNILINGYCKDRN--VEDAVSLCREMLSEGIRADATTYNTLF-----MAINNVP--- 217
+ +N ++ K N A+SL R + GI D T+N L MA N
Sbjct: 66 IIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSM 125
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDG 264
PD+ + T I GL NG V EA+ A+G H L + LI+G
Sbjct: 126 MAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFH---LDQFSYGTLING 182
Query: 265 LCKIGRLKIAWDIFHML----------------------------------MQNPGLTPD 290
LCKIG + A + + M ++PD
Sbjct: 183 LCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPD 242
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VVT++ +I+GFC GQ ++A GL +M + P+
Sbjct: 243 VVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPD 277
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + L+ + + N+ T+N LI LC + +A L KK+ P++ TF
Sbjct: 397 GRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTF 456
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A ++F++++++ + + T +++GLCK+G
Sbjct: 457 NILIYGLCKVGRLKNAQDVFQDLLSKGYSV---NAWTYNIMVNGLCKEGLFDEAEALLSK 513
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
M D G+ PD VT + L + E+A LL MI RDV
Sbjct: 514 MDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREMIARDV 554
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 172/368 (46%), Gaps = 56/368 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ C P+V+T+ +L
Sbjct: 5 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 64
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+ A LF+EM + D V T +I L + G M G
Sbjct: 65 GLGKEKRSFEAYKLFKEMALRGLAL---DTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
PDVVTL+ M D LSK G++ A + + M R + PN Y+ L+ G
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181
Query: 158 ---AWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
A K C D +YN+LI+G CK +VE A + EML G + D TYN L
Sbjct: 182 EMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGF 241
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
IN D H YT +D L KN + EA+ + I + C T
Sbjct: 242 CKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPT 301
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I T N L++GLCK+GRL+ A D+ ++ N G TPDVVTY +I G KE + +A L
Sbjct: 302 IATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYTSLIDGLGKEKRSFEAYKLF 360
Query: 315 LDMEETGL 322
+M GL
Sbjct: 361 KEMALRGL 368
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/361 (29%), Positives = 163/361 (45%), Gaps = 64/361 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT +++I GL GRI A R+FK + PN + ++ L AL +
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+M F C PD +T +IDGLCK G M++ G +PDV T N++
Sbjct: 184 LAQMKKAF---CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCT-----YNTLMDGFAWWSK-------------- 162
K G + A+ L ++ N CT Y ++D A K
Sbjct: 241 FCKAGNTDAASHSL----AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITAN 296
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
GC + +YN L+NG CK +E+A+ L R+++ G D TY +L
Sbjct: 297 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 356
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
MA+ + D+ YT I L + G + +A V+ + +H CV + T + +IDG
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L K GR+ A IF M+ GL P+ V Y+ +IHG CK + A +L M++ P
Sbjct: 417 LSKAGRIGAAVRIFKS-MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475
Query: 325 N 325
+
Sbjct: 476 D 476
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 146/334 (43%), Gaps = 61/334 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ C P+V+T+ +L
Sbjct: 286 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 345
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+ A LF+EM + D V T +I L + G M G
Sbjct: 346 GLGKEKRSFEAYKLFKEMALRGLAL---DTVCYTALIRELLQTGKIPQASSVYKTMTSHG 402
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
PDVVTL+ M D LSK G++ A + + M R + PN Y+ L
Sbjct: 403 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSAL-------------- 448
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
I+G CK R ++ A+ EML++ +A T PD+ Y I
Sbjct: 449 -------IHGLCKARKMDCAL----EMLAQMKKAFCT-------------PDTITYNILI 484
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL K+G V A F + C + T N LI G CK G A +F M +
Sbjct: 485 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD-MSSSRC 543
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ +VVTY +I G CK Q KA+ M+E G
Sbjct: 544 SANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 30/240 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR LL +I+ + TP++VT+ SLI GL E R EA +LFK++ + + +
Sbjct: 315 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC 374
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+ L L+ + + + + C PDVVT + +IDGL K G M
Sbjct: 375 YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 434
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+G+ P+ V + + L K KM+ A +L M + P+T TYN L+DG
Sbjct: 435 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 494
Query: 158 ---AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
A++ + GC+ DVY+YNILI+G+CK N + A + +M S A+ TY L
Sbjct: 495 AARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALI 554
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
K+EEA L+E + P TYN L++G + GC DV +Y
Sbjct: 1 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHVY------ 223
LI+G K++ +A L +EM G+ D Y L + +P S VY
Sbjct: 61 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120
Query: 224 ---------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+T IDGL K G + A+++F ++ + LI GLCK ++ A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ M+ TPD +TYN++I G CK G + A +M E G +P+
Sbjct: 181 LEMLAQ-MKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPD 230
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 168/352 (47%), Gaps = 54/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F LL IL S + PN+VTFN++I G C G I +A + L + T+ TL
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
AL+L +EM +P++V + +IDGLCKDGF+ D +G
Sbjct: 169 GLSKNGQIKAALHLLQEMEKS---SVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERG 225
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------- 156
+ D VT N + D G+ +E LL M++ +V+P+ T+N L+D
Sbjct: 226 ILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQ 285
Query: 157 --FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
A SK G + D+ +YN L+ GYC NV +A L M+ G+ D YN L
Sbjct: 286 GVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL---- 341
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
IDG K V EAM +F + N V TI + N LIDGLC GR+
Sbjct: 342 -------------IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISH 388
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M PDVVTYNI+I CKEG+ +A G+L+ M + G++PN
Sbjct: 389 VKKLLDE-MHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPN 439
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 58/357 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P++VT+N+L++G C+ + EA LF ++ +P+V+ +N L +V A+ L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+E+ N+ V P + + ++IDGLC G M PDVVT N++ D
Sbjct: 358 FKELCNKNLV---PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDA 414
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K+G++ EA +L +M+++ V PN TYN +MDG+ + G D
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV----------- 216
+ +YN+LINGYCK V++A+ L +EM + + D +YN+L + N+
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534
Query: 217 -------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD Y +D K +A+ +F I T + ++D LCK
Sbjct: 535 EMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGE 593
Query: 270 RLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+LK+A D H+LM G +P+V TY I+I+ CK+G +A LL ME+ P+
Sbjct: 594 KLKMAEDALKHLLMH--GCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPD 648
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 51/347 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
VL + P + ++NSLI GLC GRI +L +++ P+V+T+N L +
Sbjct: 354 AMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL-I 412
Query: 67 VALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLC--------KDGF--MMDQGMR 109
AL ++ GV+ KP++VT ++DG C KD F M+ G+
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD++ NV+ + K ++EA L + M +++ P+ +YN+L+DG +
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G DV +YNIL++ +CK + + A+SL R+++ EGI
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIW--------------- 576
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD + +D L K + A + H C ++T LI+ LCK G A
Sbjct: 577 --PDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAM 634
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ M++ PD +T+ I+I + + KA L +M GL
Sbjct: 635 LLLSK-MEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
+ +G+ P + T ++ + A LL +++ PN T+NT+++GF
Sbjct: 81 LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D ++Y LING K+ ++ A+ L +EM ++
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ-------- 192
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +Y+ IDGL K+GFV +A+ + S IG +L T N LIDG C +
Sbjct: 193 ---------PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSV 243
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + + +++ + PD T+NI+I CKEG+ +A G+L M + G +P+
Sbjct: 244 GRWQEVTQLLTKMVRE-NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 66/273 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL + S P++VT+N LI LC EGRILEA + + PN++T+
Sbjct: 384 GRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTY 443
Query: 62 NTL---------ALVALNLFE------------------------EMVNEFGVICK---- 84
N + VA ++F EMV+E V+ K
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503
Query: 85 ----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
PD+ + ++IDGLC G M D G PDV+T N++ D K ++
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILIN 176
A L +++ + P+ T + ++D K GC +V +Y ILIN
Sbjct: 564 AISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILIN 622
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
CKD + +A+ L +M DA T+ +
Sbjct: 623 ALCKDGSFGEAMLLLSKMEDNDRPPDAITFEII 655
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDS 220
C+ RNV+DAV+ M+ + ++ L AI + P
Sbjct: 31 CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+T I+ + A + + I + T N +I+G C G + A D
Sbjct: 91 ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ G D TY +I+G K GQ + A LL +ME++ ++PN
Sbjct: 151 LLAQ-GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPN 194
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + S +P+++T+N L+ C +A LF+++ V P+ T
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYT 581
Query: 61 FNTLAL-----VALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MM 104
+ + L + E+ + + C P+V T T +I+ LCKDG M
Sbjct: 582 NHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKME 641
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
D PD +T ++ L + + ++A L E MI R
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIAR 678
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/360 (33%), Positives = 174/360 (48%), Gaps = 55/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
C +PNM TF LI GLC G I A L K++ NVI N + A
Sbjct: 872 CCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSA 931
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L LF+EM E C PDV T + I+D L K G M+ +G P+VVT + +
Sbjct: 932 LELFKEM--EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L K GK++EA LL+ M + +PN TYNT++DG + GC
Sbjct: 990 LHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGC 1049
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
+ +V +Y +L++ +CK EDA+ L M+ +G + TYN+L
Sbjct: 1050 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 1109
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M P+ Y T I GL K V E + + + ++ CV I T N +ID +C
Sbjct: 1110 LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 1169
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM-EETGLEPN 325
K R+ IA+++F+ L+Q G TP++VTYN ++HG CK + +A LL +M + G P+
Sbjct: 1170 KTYRVDIAYELFN-LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 1228
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 154/330 (46%), Gaps = 70/330 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+PN+VT++SL+ GLC G++ EA L +++ C PN++T+NT
Sbjct: 980 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT---------------- 1023
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
IIDG CK G M+D G +P+VVT V+ D K GK E
Sbjct: 1024 -------------IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 1070
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
+A L+EVM+++ PN TYN+L+D F + KGC +V SYN +I
Sbjct: 1071 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 1130
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
G CK V + V L +MLS NN PD + T ID + K
Sbjct: 1131 AGLCKATKVHEGVLLLEQMLS-----------------NNCVPDIVTFNTIIDAMCKTYR 1173
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V A ++F+ I C + T N L+ GLCK R A + + + G +PD++TYN
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G CK + +A L L M GL P+
Sbjct: 1234 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPD 1263
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 181/409 (44%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL R+ S +PN+VT+N++I G C GRI EA L +++ C PNV+T+
Sbjct: 997 GKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTY 1056
Query: 62 NTL---------ALVALNLFEEMVNEFGVI------------------------------ 82
L A A+ L E MV E G +
Sbjct: 1057 TVLLDAFCKCGKAEDAIGLVEVMV-EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 1115
Query: 83 ---CKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDNLSKDGKME 129
C P+VV+ +I GLCK +G ++ + M PD+VT N + D + K +++
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 1175
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNIL 174
A L ++ + PN TYN+L+ G + GC D+ +YN +
Sbjct: 1176 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 1235
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
I+G CK + V+ A L +MLS+G+ D TY+ + M N
Sbjct: 1236 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 1295
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P + Y T IDG K G + +A+++ + + + T + ID L K GRL+ A +
Sbjct: 1296 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 1355
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ GL PD VTYN ++ GFC + A L M + G EP+
Sbjct: 1356 LLETMLR-AGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPD 1403
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 163/356 (45%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN++T+ +L+ G C G + A L +K+ PN IT+N + V A +
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+ M+ C PD + + II G CK G M+ +G RPDV L+ + D
Sbjct: 393 LQMMIQ---TGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDA 449
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGCRHD 167
L K ++ A LL + I D P+ Y+ L+ +W C D
Sbjct: 450 LCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP------- 217
V +YN +++G CK R + DA L M + G+ D TY+ + F NN+
Sbjct: 510 VVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569
Query: 218 --------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD Y+ I+GL K G V +A VF + C + T N LIDGLCKI
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN 629
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A ++ +M+ TPD +TY +I+G C + ++A +L +M++ G P+
Sbjct: 630 KVEQAAEMLE-IMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPD 684
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 165/353 (46%), Gaps = 48/353 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL ++ + F PN+ ++N+++ G C R+ A L +++ C P+V+++
Sbjct: 245 RLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYT 304
Query: 63 TL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQ 106
T+ L L+ +E + C+P+V+T ++DG C+ G M ++
Sbjct: 305 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 364
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G RP+ +T N + + ME A+ +L++MIQ P+ Y+T++ GF K
Sbjct: 365 GYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREA 424
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
GCR DV + LI+ CK ++ A L R +S G+
Sbjct: 425 HDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR--MSIGM------------- 469
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD Y+ I L K + EA + ++C + T N ++DGLCK R+
Sbjct: 470 --DCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIN 527
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ +F M+ G+ PDVVTY+I+IH FCK+ A +L M+E P+
Sbjct: 528 DAFLLFDR-MRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPD 579
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 48/340 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV--- 76
+ VT+++LI G G+IL A LF ++N + ++ L + V
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
E C PD VT +I+GL K M+D G P+V + N + K
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++E A LLE M+ R P+ +Y T+++G +GC+ +V +Y
Sbjct: 280 RVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYG 339
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAIN 214
L++G+C+ +++ AV L R+M G R +A TYN + M
Sbjct: 340 TLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQT 399
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PPD+ Y+T I G K G + EA + + C + + LID LCK + A
Sbjct: 400 GCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSA 459
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
++ M + PDVV Y+I+IH CK + +A L
Sbjct: 460 QELLRMSI-GMDCAPDVVAYSILIHALCKAKRLPEAESWL 498
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 138/348 (39%), Gaps = 84/348 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P+ + ++++I G C G++ EA L +++ C P+V +TL A++ +E+
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462
Query: 76 VN-EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ G+ C PDVV + +I LCK M+ PDVVT N + D L K
Sbjct: 463 LRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
++ +A L + M V P+ TY+ ++ F C DV +
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ LING CK V+ A + +EML G + TYNTL M
Sbjct: 583 YSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMR 642
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PDS YT I+G LC RL+
Sbjct: 643 KQSCTPDSITYTCLING-----------------------------------LCNASRLE 667
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
AW + M++ G PD +TY ++ K + LL +ME T
Sbjct: 668 EAWRVLRE-MKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEAT 714
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 149/375 (39%), Gaps = 78/375 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITF 61
R + L I S TPN+VT+NSL+ GLC R +A L +++ C P++IT+
Sbjct: 1173 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 1232
Query: 62 NTL---------ALVALNLFEEMVNE------------FGVICK---------------- 84
NT+ A LF +M+++ +CK
Sbjct: 1233 NTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 1292
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P +T +IDG CK G ++ +G PDVVT ++ D LSK G++ +
Sbjct: 1293 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 1352
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LLE M++ + P+T TYNTL+ GF C EDAV L
Sbjct: 1353 AGELLETMLRAGLVPDTVTYNTLLKGF---------------------CDASLTEDAVDL 1391
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
M G D TY TL + + + + GF L + +
Sbjct: 1392 FEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIE 1451
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ ++D K G + A +F + Q +VV ++ M+ + Q ++A
Sbjct: 1452 VEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQR-----NVVLWSAMLGVYVFHKQEEQA 1506
Query: 311 NGLLLDMEETGLEPN 325
GL M G+EP+
Sbjct: 1507 FGLWRVMGLEGVEPD 1521
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 67/285 (23%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---------- 156
G + ++ N + + L K + +A+ L I+ +T TY+TL+ G
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPA 180
Query: 157 --------------------------------------FAWWSKGCRHDVYSYNILINGY 178
F SK C D +YN +ING
Sbjct: 181 YELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGL 240
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
K ++DA+ L EM+ G + +YNT+ M PPD
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDV 300
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YTT I+GL K V EA +V + C + T L+DG C++G L A ++
Sbjct: 301 VSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRK 360
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G P+ +TYN ++H FC+ ++A+ +L M +TG P+
Sbjct: 361 MTER-GYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPD 404
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 34/244 (13%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEA---NCLLEVMI--QRDVNPNTCTYNTLMDGFAWW 160
QG+R L S++G + NCLL+ ++ +R + N L
Sbjct: 819 QGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLC------ 872
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------- 213
C +++++ ILI+G C+ ++ A L +EM G+ + +N + +
Sbjct: 873 ---CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLD 929
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
+ PPD Y+T +D L K+G V +A ++ + + C + T + L
Sbjct: 930 SALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSL 989
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ GLCK G+L A + M G +P++VTYN +I G CK G+ +A LL +M + G
Sbjct: 990 LHGLCKAGKLDEATALLQR-MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 1048
Query: 322 LEPN 325
+PN
Sbjct: 1049 CQPN 1052
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
F +L R+ + P++VT+++LI GLC G + +A +F+++ C PN++T+NTL
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622
Query: 65 -ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L +N E+ ++ C PD +T T +I+GLC M D+G
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL 682
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
PD +T + L K +E LL+ M
Sbjct: 683 PDRMTYGTLLRALQKTNNLELVEQLLKEM 711
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSK---GCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
++QR ++P F W++ G +H+++ N L+N K A L R
Sbjct: 99 VLQRLIDPGAALV------FFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSR 152
Query: 195 LSEGIRADATTYNTL---FMAINNVPP---------------DSHVYTTYIDGLYKNGFV 236
+ D TY+TL F+ + P + V+ + + GL G
Sbjct: 153 IEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQC 212
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+A+ F + + C T N +I+GL K RL A + ++ N G P+V +YN
Sbjct: 213 SDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAPNVFSYNT 270
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HGFCK + + A LL M G P+
Sbjct: 271 VLHGFCKANRVENALWLLEQMVTRGCPPD 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 129/331 (38%), Gaps = 63/331 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L + P+ VT+N+L+KG C +A LF+ + C+P+ T+
Sbjct: 1348 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATY 1407
Query: 62 NTLA--LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
TL LV +++++ E + K V T + L + DV +
Sbjct: 1408 TTLVGHLVDKKSYKDLLAE---VSKSMVDTGFKLNHEL-SSKLEASIEVEADVRLGCAIV 1463
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D K G ++A + E M QR+V WS ++ Y
Sbjct: 1464 DMFGKCGSPQDARKVFEGMDQRNV--------------VLWSA-----------MLGVYV 1498
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL----------------FMAINN---VPPDS 220
+ E A L R M EG+ DA T+ +L F++I+ + P
Sbjct: 1499 FHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGV 1558
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
++ ID L + G V EA + + C + T NCL+ KI D F
Sbjct: 1559 DHFSCVIDLLGRLGLVNEAEDLMLGM---PCKPSAATWNCLLSA------YKICGD-FER 1608
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
++ L P +Y ++ + + Q+ K+N
Sbjct: 1609 ALRVAELNPTQASYLLLSNMY---AQYDKSN 1636
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 128/412 (31%), Positives = 194/412 (47%), Gaps = 92/412 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK------------ 48
+G+ + F +LG+IL + PN +T N+L+KGLC +G + ++ K
Sbjct: 58 LGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVS 117
Query: 49 ----LNVFC-------------------CDPNVITFNTL-------ALV--ALNLFEEMV 76
LN C PNV+ +NT+ LV A +L+ EM
Sbjct: 118 YATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM- 176
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDG 126
+ G+ P+V+T + +I G C G +M+ + + P+V T ++ D L K+G
Sbjct: 177 DARGIF--PNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEG 234
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K++EA LL VM + V PN +YNTLMDG+ KG +VYSYN
Sbjct: 235 KVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYN 294
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
I+I+ CK + V++A++L RE+L + + + TY++L M
Sbjct: 295 IMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHR 354
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P D YT+ +D L KN + +A +F + T LIDGLCK GR K A
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNA 414
Query: 275 WDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F H+L++ G +V TYN+MI G CKEG +A + MEE G P+
Sbjct: 415 QKLFQHLLVK--GCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPD 464
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 71/340 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F LL +++ PN+ T+ L+ LC EG++ EA L + PNV+++
Sbjct: 199 GQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSY 258
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPD 111
NTL +DG C K F M+ +G+ P+
Sbjct: 259 NTL-----------------------------MDGYCLIGEVQNAKQMFHTMVQKGVNPN 289
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
V + N+M D L K +++EA LL ++ +++ PNT TY++L+DGF
Sbjct: 290 VYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLK 349
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+ +G DV +Y L++ CK++N++ A +L +M GI+
Sbjct: 350 EMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ----------------- 392
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + YT IDGL K G A K+F + C + + T N +I GLCK G L A +
Sbjct: 393 PNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAM 452
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ +N G PD VT+ I+I ++ Q+ KA LL +M
Sbjct: 453 KSKMEEN-GCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 162/393 (41%), Gaps = 92/393 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF---EEMV 76
TP ++ FN ++ L A LFK++ V +P++ T N L +N F +M
Sbjct: 7 TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNIL----INCFCHLGQMT 62
Query: 77 NEFGVICK-------PDVVTCTNIIDGLC----------------KDGFMMDQ------- 106
F V+ K P+ +T ++ GLC GF MDQ
Sbjct: 63 FSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLL 122
Query: 107 ----------------------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
RP+VV N + D L KD + EA L M R +
Sbjct: 123 NGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182
Query: 145 PNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSL 190
PN TY+TL+ GF K +VY+Y IL++ CK+ V++A +L
Sbjct: 183 PNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNL 242
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
M EG++ + +YNTL M V P+ + Y ID L K
Sbjct: 243 LAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCK 302
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ V EAM + + + V T + LIDG CK+GR+ A D+ M + G DVV
Sbjct: 303 SKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKE-MYHRGQPADVV 361
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY ++ CK KA L + M+E G++PN
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQPN 394
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + LL + ++VT+ SL+ LC + +A LF K+ PN T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ L A LF+ ++ + C+ +V T +I GLCK+G
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKG---CRINVWTYNVMISGLCKEGMLDEALAMKS 454
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
M + G PD VT ++ +L + + ++A LL MI +D+
Sbjct: 455 KMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL 496
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 168/352 (47%), Gaps = 54/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F LL IL S + PN+VTFN++I G C G I +A + L + T+ TL
Sbjct: 109 AFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLIN 168
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
AL+L +EM +P++V + +IDGLCKDGF+ D +G
Sbjct: 169 GLSKNGQIKAALHLLQEMEKSS---VQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERG 225
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------- 156
+ D VT N + D G+ +E LL M++ +V+P+ T+N L+D
Sbjct: 226 ILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQ 285
Query: 157 --FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
A SK G + D+ +YN L+ GYC NV +A L M+ G+ D YN L
Sbjct: 286 GVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL---- 341
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
IDG K V EAM +F + N V TI + N LIDGLC GR+
Sbjct: 342 -------------IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISH 388
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M PDVVTYNI+I CKEG+ +A G+L+ M + G++PN
Sbjct: 389 VKKLLDE-MHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPN 439
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 58/357 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P++VT+N+L++G C+ + EA LF ++ +P+V+ +N L +V A+ L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+E+ N+ V P + + ++IDGLC G M PDVVT N++ D
Sbjct: 358 FKELCNKNLV---PTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDA 414
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K+G++ EA +L +M+++ V PN TYN +MDG+ + G D
Sbjct: 415 LCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV----------- 216
+ +YN+LINGYCK V++A+ L +EM + + D +YN+L + N+
Sbjct: 475 ILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534
Query: 217 -------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD Y +D K +A+ +F I T + ++D LCK
Sbjct: 535 EMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGE 593
Query: 270 RLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+LK+A D H+LM G +P+V TY I+I+ CK+G +A LL ME+ P+
Sbjct: 594 KLKMAEDALKHLLMH--GCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPD 648
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 156/347 (44%), Gaps = 51/347 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
VL + P + ++NSLI GLC GRI +L +++ P+V+T+N L +
Sbjct: 354 AMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNIL-I 412
Query: 67 VALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLC--------KDGF--MMDQGMR 109
AL ++ GV+ KP++VT ++DG C KD F M+ G+
Sbjct: 413 DALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE 472
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD++ NV+ + K ++EA L + M +++ P+ +YN+L+DG +
Sbjct: 473 PDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G DV +YNIL++ +CK + + A+SL R+++ EGI
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIW--------------- 576
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD + +D L K + A + H C ++T LI+ LCK G A
Sbjct: 577 --PDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAM 634
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ M++ PD +T+ I+I + + KA L +M GL
Sbjct: 635 LLLSK-MEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGL 680
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
+ +G+ P + T ++ + A LL +++ PN T+NT+++GF
Sbjct: 81 LQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGM 140
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D ++Y LING K+ ++ A+ L +EM ++
Sbjct: 141 IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ-------- 192
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +Y+ IDGL K+GFV +A+ + S IG +L T N LIDG C +
Sbjct: 193 ---------PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSV 243
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + + +++ + PD T+NI+I CKEG+ +A G+L M + G +P+
Sbjct: 244 GRWQEVTQLLTKMVRE-NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPD 299
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 114/273 (41%), Gaps = 66/273 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL + S P++VT+N LI LC EGRILEA + + PN++T+
Sbjct: 384 GRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTY 443
Query: 62 NTL---------ALVALNLFE------------------------EMVNEFGVICK---- 84
N + VA ++F EMV+E V+ K
Sbjct: 444 NAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRH 503
Query: 85 ----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
PD+ + ++IDGLC G M D G PDV+T N++ D K ++
Sbjct: 504 KNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDK 563
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILIN 176
A L +++ + P+ T + ++D K GC +V +Y ILIN
Sbjct: 564 AISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILIN 622
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
CKD + +A+ L +M DA T+ +
Sbjct: 623 ALCKDGSFGEAMLLLSKMEDNDRPPDAITFEII 655
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 19/165 (11%)
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDS 220
C+ RNV+DAV+ M+ + ++ L AI + P
Sbjct: 31 CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+T I+ + A + + I + T N +I+G C G + A D
Sbjct: 91 ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ G D TY +I+G K GQ + A LL +ME++ ++PN
Sbjct: 151 LLAQ-GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPN 194
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 17/157 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPN--- 57
+GR LL + S +P+++T+N L+ C +A LF+++ V P+
Sbjct: 523 LGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYT 581
Query: 58 --VITFNTLALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MM 104
I N L + E+ + + C P+V T T +I+ LCKDG M
Sbjct: 582 NHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKME 641
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
D PD +T ++ L + + ++A L E MI R
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIAR 678
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 182/373 (48%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L R+L+ FT + + L+ GLC G++ EA + K+ +PN + +
Sbjct: 284 GRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIP----NPNTVLY 339
Query: 62 NTL--ALVALNLFEE---MVNEFGVIC--KPDVVTCTNIIDGLCKDGF----------MM 104
NTL V FEE ++ + VI +PD T +IDGLCK G+ M+
Sbjct: 340 NTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMV 399
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
+G P+V+T ++ D K G EEA+ ++ M + ++ NT YN L+
Sbjct: 400 KKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQ 459
Query: 155 DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D + SKGC+ D+Y++N LI G CK+ +E+A+ L R+ML EG+ A+ TYNTL
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M P D+ Y I L K G + + + + +
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIF 579
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+I +CN LI+ C+ G++ A ++Q GLTPD+VTYN +I+G CK G+ Q+A
Sbjct: 580 PSINSCNILINSFCRTGKVNDALQFLRDMIQR-GLTPDIVTYNSLINGLCKMGRFQEALN 638
Query: 313 LLLDMEETGLEPN 325
L ++ G+ P+
Sbjct: 639 LFNGLQAKGIHPD 651
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 152/346 (43%), Gaps = 59/346 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
+L +P + TF ++K C + A L + + C PN I + L
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
A+ L EEM F + C+PDV T ++I GLCK G M+ + D +
Sbjct: 251 VNEAMKLLEEM---FLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALI 307
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
+ L + GK++EA M+ + NPNT YNTL++G+ +
Sbjct: 308 QGYLMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNM 363
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
G D +++NI+I+G CK + A+ EM+ +G + TY L
Sbjct: 364 VIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTIL---------- 413
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
IDG K G EA KV +++ L NCLI LCK G+++ A ++
Sbjct: 414 -------IDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYG 466
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD+ T+N +I+G CK + ++A GL DM G+ N
Sbjct: 467 E-MSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIAN 511
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 37/224 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G + P++ TFNSLI GLC ++ EA L++ + + N +T+
Sbjct: 456 GKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTY 515
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
NTL A + L L ++ G + C D +T +I LCK G M
Sbjct: 516 NTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFG 575
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+ + P + + N++ ++ + GK+ +A L MIQR + P
Sbjct: 576 EEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTP-------------------- 615
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D+ +YN LING CK ++A++L + ++GI DA TYNTL
Sbjct: 616 -DIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTL 658
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 31/187 (16%)
Query: 132 NCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
N +LE+++ + V PN Y+ L S+G VY++ +++ +C V+ A
Sbjct: 169 NVVLEILVAGNCPKVAPNVF-YDML-------SRGISPTVYTFGVVMKAFCMVNEVDSAC 220
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
SL R+M G P+S +Y I L +N V EAMK+ +
Sbjct: 221 SLLRDMTKHG-----------------CVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL 263
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
C ++T N +I GLCK GR+ A + ML+++ T D + ++HG C+ G+
Sbjct: 264 MGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRD--FTADALIQGYLMHGLCRMGKV 321
Query: 308 QKANGLL 314
+A +L
Sbjct: 322 DEARAML 328
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 182/401 (45%), Gaps = 97/401 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + ALNL +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TY++++DGF +KGC ++ ++N L
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYC + ++D + L EM G+ AD TTYNTL I G Y G
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL-----------------IHGFYLVG 444
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP--------- 285
+ A+ + + + I TC+ L+DGLC G+LK A ++F ++ ++
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 156/356 (43%), Gaps = 56/356 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +F LIK C+ ++ A F KL P+V+TFNTL ALNLF
Sbjct: 113 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLF 172
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+M F C+P+VVT T +++GLC++G MM+ G++P +T + D +
Sbjct: 173 HQM---FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 123 SKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G A LL M + + PN Y+ ++D KG D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+++YN +I G+C DA L +EML I D TYN L A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P++ Y++ IDG K + A +F + C + T N LIDG C
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ ++ H M GL D TYN +IHGF G A LL +M +GL P+
Sbjct: 410 RIDDGMELLHE-MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
N L A V F EE+ +E G+I P+ +T +++IDG CK M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G P+++T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + + L++G C + ++DA+ + + M G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + PD+ Y++ IDGL K + EA
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T LI+G CK GR+ ++F M G+ + +TY +I G
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF-CEMGRRGIVANAITYITLICG 625
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPD 650
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ PN IT+
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITY 363
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
+++ N + + F ++ C P+++T +IDG C DG M +
Sbjct: 364 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ D T N + G + A LL+ MI + P+ T +TL+DG
Sbjct: 424 TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD 483
Query: 157 ----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K G DV +YNILI+G + +A L EM GI
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TY+++ M + P+ +TT I+G K G V + +++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G K+G + A DIF ++ + G+ PD +T M+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 662
Query: 303 KEGQHQKANGLLLDME 318
+ + ++A +L ++
Sbjct: 663 SKEELKRAVAMLEKLQ 678
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+ ILI +C + A+S ++ G+ D T+NTL +
Sbjct: 108 KQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CK G A ++ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 73/264 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----- 55
+G + LL ++ S P++VT ++L+ GLC G++ +A +FK + D
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502
Query: 56 ------PNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
P+V T+N L L A L+EEM + G++ PD +T +++IDGLC
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GIV--PDTITYSSMIDGLC-- 557
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
K +++EA + + M + +PN T+ T
Sbjct: 558 -----------------------KQSRLDEATQMFDSMGSKSFSPNVVTFTT-------- 586
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP 217
LINGYCK V+D + L EM GI A+A TY TL F + N+
Sbjct: 587 -------------LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633
Query: 218 PDSHVYTTYI-DGLYKNGFVLEAM 240
++ I G+Y + + M
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNM 657
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 182/401 (45%), Gaps = 97/401 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + ALNL +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TY++++DGF +KGC ++ ++N L
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYC + ++D + L EM G+ AD TTYNTL I G Y G
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL-----------------IHGFYLVG 444
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP--------- 285
+ A+ + + + I TC+ L+DGLC G+LK A ++F ++ ++
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
N L A V F EE+ +E G+I P+ +T +++IDG CK M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G P+++T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + + L++G C + ++DA+ + + M G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + PD+ Y++ IDGL K + EA
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T LI+G CK GR+ ++F M G+ + +TY +I G
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF-CEMGRRGIVANAITYITLICG 625
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPD 650
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 51/269 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+PN++TFN+LI G C RI + L ++ + T+NTL AL+
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L +EM++ +C PD+VTC ++DGLC +G + D G+
Sbjct: 452 LLQEMIS--SGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 568
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMA 212
+ SK +V ++ LINGYCK V+D + L EM GI A+A TY TL F
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
Query: 213 INNVPPDSHVYTTYI-DGLYKNGFVLEAM 240
+ N+ ++ I G+Y + + M
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNM 657
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ PN IT+
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITY 363
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
+++ N + + F ++ C P+++T +IDG C DG M +
Sbjct: 364 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ D T N + G + A LL+ MI + P+ T +TL+DG
Sbjct: 424 TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD 483
Query: 157 ----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K G DV +YNILI+G + +A L EM GI
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TY+++ M + P+ +TT I+G K G V + +++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G K+G + A DIF ++ + G+ PD +T M+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 662
Query: 303 KEGQHQKANGLLLDME 318
+ + ++A +L ++
Sbjct: 663 SKEELKRAVAMLEKLQ 678
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 41/256 (16%)
Query: 89 TCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+C+ + L G + G+ PDVVT N + L + ++ EA L M + PN
Sbjct: 126 SCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVV 185
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
T+ TLM NG C++ + +AV+L M+ +G++ TY T
Sbjct: 186 TFTTLM---------------------NGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224
Query: 209 L-------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ ++++ P+ +Y+ ID L K+G +A +F+ +
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N +I G C GR A + +++ ++PDVVTYN +I+ F KEG+ +
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343
Query: 310 ANGLLLDMEETGLEPN 325
A L +M G+ PN
Sbjct: 344 AEELYDEMLPRGIIPN 359
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+ ILI +C + A+S ++ G+ D T+NTL +
Sbjct: 108 KQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CK G A ++ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 120/401 (29%), Positives = 182/401 (45%), Gaps = 97/401 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + ALNL +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TY++++DGF +KGC ++ ++N L
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYC + ++D + L EM G+ AD TTYNTL I G Y G
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL-----------------IHGFYLVG 444
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP--------- 285
+ A+ + + + I TC+ L+DGLC G+LK A ++F ++ ++
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 156/356 (43%), Gaps = 56/356 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +FN LIK C+ ++ A F K+ P+V+TF TL ALNLF
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLF 172
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+M F C+P+VVT T +++GLC++G MM+ G++P +T + D +
Sbjct: 173 HQM---FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 123 SKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G A LL M + + PN Y+ ++D KG D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+++YN +I G+C DA L +EML I D TYN L A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P++ Y++ IDG K + A +F + C + T N LIDG C
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ ++ H M GL D TYN +IHGF G A LL +M +GL P+
Sbjct: 410 RIDDGMELLHE-MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
N L A V F EE+ +E G+I P+ +T +++IDG CK M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G P+++T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + + L++G C + ++DA+ + + M G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + PD+ Y++ IDGL K + EA
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T LI+G CK GR+ ++F M G+ + +TY +I G
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF-CEMGRRGIVANAITYITLICG 625
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPD 650
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ PN IT+
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITY 363
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
+++ N + + F ++ C P+++T +IDG C DG M +
Sbjct: 364 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ D T N + G + A LL+ MI + P+ T +TL+DG
Sbjct: 424 TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD 483
Query: 157 ----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K G DV +YNILI+G + +A L EM GI
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TY+++ M + P+ +TT I+G K G V + +++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G K+G + A DIF ++ + G+ PD +T M+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 662
Query: 303 KEGQHQKANGLLLDME 318
+ + ++A +L ++
Sbjct: 663 SKEELKRAVAMLEKLQ 678
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+NILI +C + A+S ++ G+ D T+ TL +
Sbjct: 108 KQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CK G A ++ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 73/264 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----- 55
+G + LL ++ S P++VT ++L+ GLC G++ +A +FK + D
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502
Query: 56 ------PNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
P+V T+N L L A L+EEM + G++ PD +T +++IDGLC
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GIV--PDTITYSSMIDGLC-- 557
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
K +++EA + + M + +PN T+ T
Sbjct: 558 -----------------------KQSRLDEATQMFDSMGSKSFSPNVVTFTT-------- 586
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP 217
LINGYCK V+D + L EM GI A+A TY TL F + N+
Sbjct: 587 -------------LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633
Query: 218 PDSHVYTTYI-DGLYKNGFVLEAM 240
++ I G+Y + + M
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNM 657
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 192/412 (46%), Gaps = 92/412 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK------------ 48
+G+ + F +LG+IL + PN + N+L+KGLC +G + ++ K
Sbjct: 58 LGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVS 117
Query: 49 ----LNVFC-------------------CDPNVITFNTL-------ALV--ALNLFEEMV 76
LN C P+V+ ++T+ LV A +L+ EM
Sbjct: 118 YGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEM- 176
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDG 126
N G+ PDV+T T +I G C G +M+ + + P++ T N + D L K+G
Sbjct: 177 NARGIF--PDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEG 234
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K++E+ LL VM ++ V P+ Y+ LMDG+ G DVYSYN
Sbjct: 235 KVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYN 294
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
I+ING CK + V++A++L REML + + D TY++L M
Sbjct: 295 IIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P + Y + +DGL KN + +A+ +F + T LIDGLCK GRLK
Sbjct: 355 GQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKG 414
Query: 275 WDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F H+L++ G DV TY +MI G CKEG +A + ME+ G PN
Sbjct: 415 QALFQHLLVK--GYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPN 464
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 71/347 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F LL +++ PN+ T+N+LI LC EG++ E+ L
Sbjct: 199 GQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLL--------------- 243
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
++ + GV KPDVV + ++DG C G M+ G+ PD
Sbjct: 244 ------------AVMTKKGV--KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPD 289
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
V + N++ + L K +++EA LL M+ +++ P+T TY++L+DG
Sbjct: 290 VYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTK 349
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+G ++ +YN L++G CK++N++ A++L +M GI+
Sbjct: 350 EMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQ----------------- 392
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + YT IDGL K G + + +F + + + T +I GLCK G A +
Sbjct: 393 PNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAM 452
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M++ G P+ VT+ I+I ++ ++ KA LL +M GL P
Sbjct: 453 -KSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M +G+ PD+VTL+++ + G+M + +L +++ PNT NTLM G
Sbjct: 36 MEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGE 95
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G + D SY IL+NG CK A+ L R + R D Y+T
Sbjct: 96 VKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYST 155
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + PD YTT I G G ++EA + + +
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKN 215
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T N LID LCK G++K + ++ +M G+ PDVV Y+I++ G+C G+ QKA
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLL-AVMTKKGVKPDVVIYSILMDGYCLVGEVQKA 274
Query: 311 NGLLLDMEETGLEPN 325
+ L M +TG+ P+
Sbjct: 275 KQIFLVMVQTGVNPD 289
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL +L P+ VT++SLI GLC GRI L K+++ N++T+N
Sbjct: 305 RVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYN 364
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+L A+ LF +M E G+ +P+ T T +IDGLCK G +
Sbjct: 365 SLLDGLCKNQNLDKAIALFMKM-KERGI--QPNKYTYTALIDGLCKGGRLKKGQALFQHL 421
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ +G DV T VM L K+G +EA + M PN T+ ++ +
Sbjct: 422 LVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDEN 481
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVS 189
+ + + ++ G RN S
Sbjct: 482 DKAEKLLHEMIAKGLLPFRNFHSERS 507
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 56/216 (25%)
Query: 165 RH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
RH + + ++ K ++ +SL ++M ++GI D T + L
Sbjct: 5 RHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFS 64
Query: 210 FMAINNV-----PPDSHVYTTYIDGLYKNGFVLEAM----KVFS---------------- 244
F + + P++ + T + GL G V +++ KV +
Sbjct: 65 FSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNG 124
Query: 245 --AIGNHKCVL----TIE---------TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
IG +C + TIE + +IDGLCK + A+D++ M G+ P
Sbjct: 125 LCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSE-MNARGIFP 183
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV+TY +I GFC GQ +A GLL +M + PN
Sbjct: 184 DVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPN 219
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 175/367 (47%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LG+++ P++VTF SL+ G C R+ +A +F ++ PNV+ +NT+
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL+L M + G+ PDVVT ++I GLC G M + + P
Sbjct: 198 KSKQVDNALDLLNRMEKD-GI--GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYP 254
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
DV T N + D K+G++ EA E MI+R ++P+ TY+ L+ G +S
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KGC DV +Y+ILINGYCK + VE + L EM G+ + TY L
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V P+ Y + GL NG + +A+ + + + + I T
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I G+CK G + AWDI+ L GL PD+ TY M+ G K+G ++A+ L M+
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSL-NCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMK 493
Query: 319 ETGLEPN 325
E G+ PN
Sbjct: 494 EDGILPN 500
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 146/372 (39%), Gaps = 87/372 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ F+ L+ + + L++++ + N+ T N L LN F
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNIL----LNCF-------- 126
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
C+ C+ + L G M+ G P +VT + + + ++ +A + + M+
Sbjct: 127 --CR-----CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 141 RDVNPNTCTYNTLMDGF--------------------------------------AWWSK 162
PN YNT++DG WS
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 163 GCRH-----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-- 209
R DV+++N LI+ K+ V +A EM+ + D TY+ L
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 210 ----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
FM PD Y+ I+G K+ V MK+F + V
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T LI G C+ G+L +A +IF M G+ P+++TYN+++HG C G+ +KA +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRR-MVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 314 LLDMEETGLEPN 325
L DM++ G++ +
Sbjct: 419 LADMQKNGMDAD 430
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL--ALVALNLFEEMVNE 78
N VT+ LI+G C G++ A +F+++ VFC PN+IT+N L L E+ +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRM-VFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
+ K D+VT II G+CK G + D QG+ PD+ T M L K
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYK 478
Query: 125 DGKMEEANCLLEVMIQRDVNPNTC 148
G EA+ L M + + PN C
Sbjct: 479 KGLRREADALFRKMKEDGILPNEC 502
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 185/409 (45%), Gaps = 93/409 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---NVFCCDPN 57
M R GF +L N VTF +LI+GL E ++ +A LFKKL N+ C+PN
Sbjct: 120 MHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI--CEPN 177
Query: 58 VITFNTL------------ALVALNLFEEMVNE---------FGVICK------------ 84
+ + T+ A L L E+ + CK
Sbjct: 178 EVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLN 237
Query: 85 --------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
PD+ T + +ID LCK M+ + P+V T N + D L K+G
Sbjct: 238 EMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEG 297
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K+E+A ++ MI++ V+P+ TYN ++DG+ + +K D+ SYN
Sbjct: 298 KVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYN 357
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
ILINGY + + +++A+ +CRE+ +G++ T N L + +
Sbjct: 358 ILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA 417
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD + + T + G +KNG V EAM F + + I+ +IDGLCK G+L A
Sbjct: 418 GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKA 477
Query: 275 WDIFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
F L P GL PDV+TY MI G+C+EG +A +L ME+ G
Sbjct: 478 HATFEKL---PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 89/356 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + PN T+ +I C +G + A L ++ P++ T+
Sbjct: 192 GHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTY 251
Query: 62 NTL--ALVALN-------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+TL AL L+ LF EM++ + P+V T ++IDGLCK+G +
Sbjct: 252 STLIDALCKLSQWENVRTLFLEMIH---LNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRY 308
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G+ PDV+T N++ D G+++ A + + MI + + P+ +YN L++G+A K
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKK 368
Query: 163 ------GCRH-------------------------------------------DVYSYNI 173
CR D+Y++
Sbjct: 369 IDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCT 428
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
L+ GY K+ VE+A+S ++ + Y + + +
Sbjct: 429 LLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIG 488
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD YT I G + G + EA + + ++ C+ T N ++ G + ++
Sbjct: 489 LHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKV 544
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++++N LI G + +I EA ++ ++++ P+++T N L A N
Sbjct: 351 PDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNF 410
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD--VVTLNVMTDN 121
F+EM++ + PD+ T ++ G K+G + + + R D + + D
Sbjct: 411 FDEMLSAGHI---PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDG 467
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K+GK+++A+ E + ++P+ TY ++ G+ GC D
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLAD 527
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+YN+++ G+ + V + + E+ + +A T L I P
Sbjct: 528 NRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDP 577
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 22/162 (13%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++DA SL R+M+ +++ L A+ ++ S V + + + ++K + +
Sbjct: 53 LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFRE-IHKLRIPVHEF-IL 110
Query: 244 SAIGNHKC----------VLTIE----------TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
S + N C VL I T LI GL ++K A +F L++
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ V Y +++G CK+G QKA LL ME+ +PN
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPN 212
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 185/378 (48%), Gaps = 61/378 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F LLG+IL + PN +T+ +L+KGLC +G + + K+ N ++
Sbjct: 58 LGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVS 117
Query: 61 FNTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----- 103
+ TL A+ L + E+ +P+VV + IIDGLCKD +
Sbjct: 118 YGTLLNGLCKTGETRCAIKLLRMIEDRST------RPNVVMYSAIIDGLCKDKLVNEAYD 171
Query: 104 ----MD-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF- 157
MD + + P+V+T N + G++ A LL MI +++NP+ T++ L+D
Sbjct: 172 LYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALC 231
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
A G +VYSYNI+ING CK + V++A++L REML + + D TY
Sbjct: 232 KEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 291
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N+L M P D YT+ +D L KN + +A +F +
Sbjct: 292 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 351
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
T+ T LIDGLCK GRLK A ++F H+L++ G DV TY +MI G CKEG
Sbjct: 352 RGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVK--GCCIDVWTYTVMISGLCKEGMF 409
Query: 308 QKANGLLLDMEETGLEPN 325
+A + ME+ G PN
Sbjct: 410 DEALAIKSKMEDNGCIPN 427
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 157/349 (44%), Gaps = 84/349 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+V ++++I GLC + + EA L+ +++ PNVIT+NTL + A L +++ F
Sbjct: 148 PNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTL-ICAFCLAGQLMGAFS 206
Query: 81 VICK-------PDVVTCTNIIDGLCKDG--------FMMDQGMRPDVVTLNVMTDNLSKD 125
++ + PDV T + +ID LCK+G M+ G+ P+V + N+M + L K
Sbjct: 207 LLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKC 266
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
+++EA LL M+ +++ P+T TYN+L+DG +G DV +Y
Sbjct: 267 KRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTY 326
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
L++ CK++N++ A +L +M GI+ TY L + +
Sbjct: 327 TSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLV 386
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
D YT I GL K G EA+ + S + ++ C+
Sbjct: 387 KGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCI--------------------- 425
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P+ VT+ I+I ++ ++ KA LL +M GL
Sbjct: 426 ---------------PNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 38/245 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G F LL +++ P++ TF+ LI LC EG+ A ++F + +PNV ++
Sbjct: 199 GQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSY 256
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + A+NL EM+++ V PD VT ++IDGLCK G
Sbjct: 257 NIMINGLCKCKRVDEAMNLLREMLHKNMV---PDTVTYNSLIDGLCKSGRITSALNLMNE 313
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G DVVT + D L K+ +++A L M +R + P TY L+DG
Sbjct: 314 MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR 373
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC DV++Y ++I+G CK+ ++A+++ +M G +A T+
Sbjct: 374 LKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEI 433
Query: 209 LFMAI 213
+ ++
Sbjct: 434 IIRSL 438
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 119/283 (42%), Gaps = 70/283 (24%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G+ ++VTL+++ + G+M + LL +++ PNT T+ TLM G
Sbjct: 39 KGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKK 98
Query: 158 -----------AWWS------------------------------KGCRHDVYSYNILIN 176
A+ + + R +V Y+ +I+
Sbjct: 99 LLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIID 158
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G CKD+ V +A L EM + I + TYNTL M + N+ P
Sbjct: 159 GLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINP 218
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + ++ ID L K G A ++F A+ + + N +I+GLCK R+ A ++
Sbjct: 219 DVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLL 276
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
++ + + PD VTYN +I G CK G+ A L+ +M G
Sbjct: 277 REML-HKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRG 318
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 176/367 (47%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++L S TP+ V + SLI GLC +A LF +N C P+ +T+N +
Sbjct: 32 LFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDASC 91
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
A +L ++M+ + V PDVVT ++DGLCK G + + G P
Sbjct: 92 KRGMLEEACDLIKKMIEDGHV---PDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTP 148
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + L + K+++A + M RD+ P++ +Y L+DG A K
Sbjct: 149 NRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
G +YN++I+G C +++A+ L + M S+G R T+N L
Sbjct: 209 RRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268
Query: 210 ------FMAINNVPPDSHV-----YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
F + + D HV Y+T I GL V +A + + +C T+ T
Sbjct: 269 GKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 328
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI GLCK GR+K A ++ ++ + G +PDVVTYN ++HG C+ GQ ++A LL DM
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSS-GQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Query: 319 ETGLEPN 325
GL PN
Sbjct: 388 ARGLAPN 394
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 160/394 (40%), Gaps = 84/394 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L+ +++ P++VT+N+++ GLC GR+ EA LF ++ C PN + NT+ L
Sbjct: 102 LIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLC 161
Query: 67 ------VALNLFEEMVNE--------FGVICK------------------------PDVV 88
A +F EM +G++ P V
Sbjct: 162 QQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAV 221
Query: 89 TCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T +I G+C M +G RP T N++ D K GKM+EA LL+ M
Sbjct: 222 TYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRM 281
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
P+ TY+TL+ G ++ C+ V + N LI+G CK +
Sbjct: 282 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 341
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A + M+S G D TYNTL M + P+ YT
Sbjct: 342 KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTAL 401
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ GL K + EA VF+ + + C + T LI G C G++ +F M G
Sbjct: 402 VSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGE-MVCAG 460
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
++PD V Y + CK G+ +A +L + E+
Sbjct: 461 ISPDHVVYGTLAAELCKSGRSARALEILREGRES 494
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 140/322 (43%), Gaps = 55/322 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ ++ LI GL G++ +A LF+KL P+ + + +L L N F++
Sbjct: 7 SPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
F M +G P VT NV+ D K G +EEA L++
Sbjct: 67 LFA---------------------DMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKK 105
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRN 183
MI+ P+ TYNT+MDG + GC + S+N +I G C+
Sbjct: 106 MIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 165
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++ A + EM + ++PPDS Y IDGL K G + EA K+F
Sbjct: 166 IDQACQVFHEMEA-----------------RDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + + T N +I G+C L A ++F M++ G P T+NI+I CK
Sbjct: 209 RRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS-MRSKGCRPSRFTFNILIDAHCK 267
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G+ +A LL M + G P+
Sbjct: 268 RGKMDEAFRLLKRMTDDGHVPD 289
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M ++ + PD + ++ D L+K GK+ +A L + ++ V P+T Y +L+ G +
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+GC +YN++I+ CK +E+A L ++M+ +G D TYNT
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ +DGL K+G V EA+ +F+ + C + N +I GLC+
Sbjct: 121 V-----------------MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 163
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A +FH M+ + PD +Y I+I G K G+ +A L M ++G+ P+
Sbjct: 164 SKIDQACQVFHE-MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPS 219
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 177/340 (52%), Gaps = 54/340 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ P++ T+ ++I GLC G + AA LFKK+ C P+V+T++T+ AL
Sbjct: 6 YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
++F M + G+ P++ T ++I GLC MM + P++VT +++
Sbjct: 66 DIFSYMKAK-GI--SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 122
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
+ K+G + EA +L+ M + V PN TY++LM+G++ + KGC+
Sbjct: 123 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCK 182
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV+SYNILINGYCK + + +A L EM+ +G+ D +YNTL
Sbjct: 183 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL---------------- 226
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL + G + EA +F + + + + T + L+DG CK G L A+ +F MQ+
Sbjct: 227 -IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRA-MQST 284
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L P++V YNI+I CK ++A L ++ GL+PN
Sbjct: 285 YLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPN 324
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 68/290 (23%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ +G +PDV T + + L K G+ A L + M + P+ TY+T++D
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 157 -------FAWW-SKGCRHDVYSYNILING------------------------------- 177
F++ +KG ++++YN LI G
Sbjct: 61 VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120
Query: 178 ----YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
+CK+ NV +A + + M G+ + TY++L M
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD Y I+G K + EA ++F+ + + I + N LIDGLC++GRL+ A
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F ++ N L PD+ TY+I++ GFCK+G KA L M+ T L+PN
Sbjct: 241 DLFKNMLTNGNL-PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPN 289
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L +L + P++ T++ L+ G C +G + +A RLF+ + PN++
Sbjct: 233 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVM 292
Query: 61 FNTL 64
+N L
Sbjct: 293 YNIL 296
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 54/374 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R L+ R+L+ FTPN T+ L+ GLC G++ EA L K+ +PNV+
Sbjct: 300 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVL 355
Query: 61 FNTL--ALVALNLFEE---MVNE--FGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
FNTL V+ +E +++E V C PD+ T +I GLCK G+++
Sbjct: 356 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 415
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+G P+V+T ++ D K+G++EEA +L+ M + + N YN L+
Sbjct: 416 QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKV 475
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC+ D++++N LI G CK E+A+ L ++ML EG+ A+ TYNTL
Sbjct: 476 QDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL 535
Query: 210 FMA-------------INNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A +N++ P D Y I L + G + + + +F + +
Sbjct: 536 IHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL 595
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+CN LI+GLC+ G ++ A + ++ GLTPD+VTYN +I+G CK G+ Q+A
Sbjct: 596 NPNNISCNILINGLCRTGNIQHALEFLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEAL 654
Query: 312 GLLLDMEETGLEPN 325
L ++ G+ P+
Sbjct: 655 NLFDKLQVEGICPD 668
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 151/344 (43%), Gaps = 53/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+L +P + TF ++K LC + A L K + C PN I + TL AL +
Sbjct: 207 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVG 266
Query: 71 LFEEMVNEFGVI----CKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLN 116
E++ + C PDV T + I GLCK M+ +G P+ T
Sbjct: 267 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYG 326
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------AWWS 161
V+ L + GK++EA LL + NPN +NTL++G+ + S
Sbjct: 327 VLMHGLCRMGKVDEARMLL----NKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLS 382
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC D+++YN LI G CK + A RE+++E M I P+
Sbjct: 383 VGCGPDIFTYNTLILGLCKKGYLVSA----RELMNE-------------MQIKGCEPNVI 425
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT ID K G + EA V + L NCLI LCK +++ A ++F
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD- 484
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD+ T+N +I G CK + ++A GL DM G+ N
Sbjct: 485 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 528
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 158/325 (48%), Gaps = 47/325 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN + + +LI L GR+ E +L +++ + C P+V TFN ++ ++ ++
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 309
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDG------FMMDQGMRPDVVTLNVMTDNLSKDGKM 128
V+ + P+ T ++ GLC+ G ++++ P+VV N + + G++
Sbjct: 310 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRL 369
Query: 129 EEANCLL-EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+EA ++ E M+ P+ TYNTL+ G KGC +V +Y I
Sbjct: 370 DEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTI 429
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI+ +CK+ +E+A ++ EM +G+ +A YN L I L K+
Sbjct: 430 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCL-----------------ISALCKD 472
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVV 292
V +A+ +F + + C I T N LI GLCK+ + + A ++ ML++ G+ + +
Sbjct: 473 EKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE--GVIANTI 530
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDM 317
TYN +IH F + G Q+A L+ DM
Sbjct: 531 TYNTLIHAFLRRGAMQEALKLVNDM 555
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 34/220 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N V +N LI LC + ++ +A +F ++ C P++ TFN+L L +N FEE + +
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517
Query: 80 ------GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
GVI + +T +I + G M + +G D +T N + L
Sbjct: 518 QDMLLEGVIA--NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALC 575
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G +E+ L E M+ + +NPN + N L++G +G D+
Sbjct: 576 RAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIV 635
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+YN LING CK ++A++L ++ EGI DA TYNTL
Sbjct: 636 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTL 675
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---M 75
P++ TFNSLI GLC + EA L++ + + N IT+NTL A + +E +
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
VN+ C D +T +I LC+ G MM +G+ P+ ++ N++ + L +
Sbjct: 552 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 611
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
G ++ A L MI R + P+ TYN+L++G +G D +
Sbjct: 612 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 671
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YN LI+ +CK+ +DA L + G + T+ L
Sbjct: 672 YNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 710
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 25/168 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
+L+ N +T+N+LI G + EA +L + C + IT+N L
Sbjct: 520 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 579
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMRPDVVT 114
L LFE+M+++ G+ P+ ++C +I+GLC+ G F+ D +G+ PD+VT
Sbjct: 580 IEKGLALFEDMMSK-GL--NPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 636
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
N + + L K G+ +EA L + + + P+ TYNTL+ +W K
Sbjct: 637 YNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI---SWHCK 681
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEE 74
+T+N LIK LC G I + LF+ + +PN I+ N L AL +
Sbjct: 565 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 624
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
M++ G+ PD+VT ++I+GLCK G + +G+ PD +T N + K
Sbjct: 625 MIHR-GL--TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 681
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+G ++A+ LL + PN T+ L+ F
Sbjct: 682 EGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNF 714
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
TP++VT+NSLI GLC GR EA LF KL V P+ IT+NT L++ + E M ++
Sbjct: 630 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNT--LISWHCKEGMFDD 687
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
++ V D G P+ VT ++ N K+G E
Sbjct: 688 AHLLLSRGV-----------------DSGFIPNEVTWYILVSNFIKEGDQE 721
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 54/374 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R L+ R+L+ FTPN T+ L+ GLC G++ EA L K+ +PNV+
Sbjct: 318 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVL 373
Query: 61 FNTL--ALVALNLFEE---MVNE--FGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
FNTL V+ +E +++E V C PD+ T +I GLCK G+++
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEM 433
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+G P+V+T ++ D K+G++EEA +L+ M + + N YN L+
Sbjct: 434 QIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKV 493
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC+ D++++N LI G CK E+A+ L ++ML EG+ A+ TYNTL
Sbjct: 494 QDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL 553
Query: 210 FMA-------------INNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A +N++ P D Y I L + G + + + +F + +
Sbjct: 554 IHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL 613
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+CN LI+GLC+ G ++ A + ++ GLTPD+VTYN +I+G CK G+ Q+A
Sbjct: 614 NPNNISCNILINGLCRTGNIQHALEFLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEAL 672
Query: 312 GLLLDMEETGLEPN 325
L ++ G+ P+
Sbjct: 673 NLFDKLQVEGICPD 686
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 151/344 (43%), Gaps = 53/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+L +P + TF ++K LC + A L K + C PN I + TL AL +
Sbjct: 225 EMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVG 284
Query: 71 LFEEMVNEFGVI----CKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLN 116
E++ + C PDV T + I GLCK M+ +G P+ T
Sbjct: 285 RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYG 344
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------AWWS 161
V+ L + GK++EA LL + NPN +NTL++G+ + S
Sbjct: 345 VLMHGLCRMGKVDEARMLL----NKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLS 400
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC D+++YN LI G CK + A RE+++E M I P+
Sbjct: 401 VGCGPDIFTYNTLILGLCKKGYLVSA----RELMNE-------------MQIKGCEPNVI 443
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT ID K G + EA V + L NCLI LCK +++ A ++F
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGD- 502
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD+ T+N +I G CK + ++A GL DM G+ N
Sbjct: 503 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIAN 546
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 158/326 (48%), Gaps = 47/326 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
PN + + +LI L GR+ E +L +++ + C P+V TFN ++ ++ +
Sbjct: 267 VPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAK 326
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDG------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
+V+ + P+ T ++ GLC+ G ++++ P+VV N + + G+
Sbjct: 327 LVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGR 386
Query: 128 MEEANCLL-EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++EA ++ E M+ P+ TYNTL+ G KGC +V +Y
Sbjct: 387 LDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYT 446
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
ILI+ +CK+ +E+A ++ EM +G+ +A YN L I L K
Sbjct: 447 ILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCL-----------------ISALCK 489
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDV 291
+ V +A+ +F + + C I T N LI GLCK+ + + A ++ ML++ G+ +
Sbjct: 490 DEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE--GVIANT 547
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
+TYN +IH F + G Q+A L+ DM
Sbjct: 548 ITYNTLIHAFLRRGAMQEALKLVNDM 573
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 34/220 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N V +N LI LC + ++ +A +F ++ C P++ TFN+L L +N FEE + +
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535
Query: 80 ------GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
GVI + +T +I + G M + +G D +T N + L
Sbjct: 536 QDMLLEGVIA--NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALC 593
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G +E+ L E M+ + +NPN + N L++G +G D+
Sbjct: 594 RAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIV 653
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+YN LING CK ++A++L ++ EGI DA TYNTL
Sbjct: 654 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTL 693
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---M 75
P++ TFNSLI GLC + EA L++ + + N IT+NTL A + +E +
Sbjct: 510 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
VN+ C D +T +I LC+ G MM +G+ P+ ++ N++ + L +
Sbjct: 570 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 629
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G ++ A L MI R + P+ TYN+L++G + G D +
Sbjct: 630 TGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAIT 689
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YN LI+ +CK+ +DA L + G + T+ L
Sbjct: 690 YNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYIL 728
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 25/168 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
+L+ N +T+N+LI G + EA +L + C + IT+N L
Sbjct: 538 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 597
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMRPDVVT 114
L LFE+M+++ G+ P+ ++C +I+GLC+ G F+ D +G+ PD+VT
Sbjct: 598 IEKGLALFEDMMSK-GL--NPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVT 654
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
N + + L K G+ +EA L + + + P+ TYNTL+ +W K
Sbjct: 655 YNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI---SWHCK 699
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEE 74
+T+N LIK LC G I + LF+ + +PN I+ N L AL +
Sbjct: 583 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 642
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
M++ G+ PD+VT ++I+GLCK G + +G+ PD +T N + K
Sbjct: 643 MIHR-GL--TPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCK 699
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+G ++A+ LL + PN T+ L+ F
Sbjct: 700 EGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNF 732
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
TP++VT+NSLI GLC GR EA LF KL V P+ IT+NT L++ + E M ++
Sbjct: 648 LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNT--LISWHCKEGMFDD 705
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
++ V D G P+ VT ++ N K+G E
Sbjct: 706 AHLLLSRGV-----------------DSGFIPNEVTWYILVSNFIKEGDQE 739
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LG+++ F P++VTF SL+ G C R EA L ++ +PNV+ +
Sbjct: 128 ARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIY 187
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ AL++ + M + G+ +PDVVT ++I L G
Sbjct: 188 NTIIDSLCEKGQVNTALDVLKHM-KKMGI--RPDVVTYNSLITRLFHSGTWGVSARILSD 244
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM G+ PDV+T + + D K+G++ EA MIQR VNPN TYN+L++G
Sbjct: 245 MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGL 304
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG + +YN LINGYCK + V+D + + M +G+ D TYNT
Sbjct: 305 LDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNT 364
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L+ M V PD + + +DGL +G + +A+ + K
Sbjct: 365 LYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSK 424
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V+ I T N +I GLCK +++ AW +F L G++PDV+TY M+ G ++ ++A
Sbjct: 425 TVVGIITYNIIIKGLCKADKVEDAWYLFCSLALK-GVSPDVITYITMMIGLRRKRLWREA 483
Query: 311 NGLLLDME-ETGLEP 324
+ L M+ E GL P
Sbjct: 484 HELYRKMQKEDGLMP 498
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 180/370 (48%), Gaps = 52/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL- 64
GF LG+I+ + VTF L++ LC E R +A + +++ C P+V ++ TL
Sbjct: 163 GFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLL 222
Query: 65 -ALVALNLFEE------MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
L A EE M+ E G C P+VV+ T +I G K+G M+D G
Sbjct: 223 KGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHG 282
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK-- 162
+ P+VVT N + D L K M++A +L+ MI + PN TYN+L+ G+ W++
Sbjct: 283 IPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAV 342
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---- 209
G R +V +Y++LI+ CK +A + M+ G + +A+TY +L
Sbjct: 343 RILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGY 402
Query: 210 --------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M N + P HV+ I K G + EA F+ + + I
Sbjct: 403 ATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDI 462
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+IDGLCKIGRL A F ++ + GL+PD++T+N +IHGF G+ +KA L
Sbjct: 463 VAYTTVIDGLCKIGRLDDAMSRFCQMIDD-GLSPDIITFNTLIHGFALHGKWEKAEELFY 521
Query: 316 DMEETGLEPN 325
+M + G+ PN
Sbjct: 522 EMMDRGIPPN 531
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 165/394 (41%), Gaps = 92/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLALVALNLFEE--M 75
TP++ ++ +L+KGLC E + EAA L + + C PNV+++ T V F+E +
Sbjct: 212 TPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTT---VIHGFFKEGDV 268
Query: 76 VNEFGVICK-------PDVVTCTNIIDGLCK----------------------------- 99
+ + CK P+VVTC ++IDGLCK
Sbjct: 269 GKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSL 328
Query: 100 -DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
G+ M G RP+VVT +++ D L K G EA + MIQ
Sbjct: 329 IHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQ 388
Query: 144 NPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
PN TY +L+ G+A G R + +NI I YCK +++A
Sbjct: 389 KPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASL 448
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+M +G D Y T+ M + + PD + T I G
Sbjct: 449 TFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFA 508
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+G +A ++F + + + T N +ID L K G++ A +F LM G P+V
Sbjct: 509 LHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFD-LMPRAGAKPNV 567
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+YN MIHG+ G+ + LL DM GL+P
Sbjct: 568 VSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPT 601
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 128/270 (47%), Gaps = 33/270 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++ F P++V + ++I GLC GR+ +A F ++ P++ITF
Sbjct: 441 GRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITF 500
Query: 62 NTL----AL-----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL AL A LF EM++ G+ P+V T ++ID L K+G
Sbjct: 501 NTLIHGFALHGKWEKAEELFYEMMDR-GI--PPNVNTFNSMIDKLFKEGKVTEARKLFDL 557
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G +P+VV+ N M G++ E LL+ M+ + P T+NTL+DG S
Sbjct: 558 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMV--SM 615
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + DV + LI+ C+D +ED ++L REML + + D T N + V H
Sbjct: 616 GLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLRGV-TVKASYHC 674
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ I L+A++V + G C+
Sbjct: 675 SSVVIS--------LKALEVVTQAGAISCI 696
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 142/353 (40%), Gaps = 99/353 (28%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72
PN+VT++ LI LC G EA +F + PN T+ +L LV +N
Sbjct: 355 PNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNV 414
Query: 73 EEMVNEFGV-------------ICK--------------------PDVVTCTNIIDGLCK 99
++++ + G+ CK PD+V T +IDGLCK
Sbjct: 415 KDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCK 474
Query: 100 DGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M+D G+ PD++T N + + GK E+A L M+ R + PN T
Sbjct: 475 IGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNT 534
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+N+++D K G + +V SYN +I+GY V + + L +ML
Sbjct: 535 FNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 594
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
G++ A T+NTL +DG+ G + +
Sbjct: 595 LIGLKPTAVTFNTL-----------------LDGMVSMGLKPDVV--------------- 622
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
TC LID C+ GR++ +F ++ T D +T NI + G + +
Sbjct: 623 -TCKTLIDSCCEDGRIEDILTLFREMLGKADKT-DTITENIKLRGVTVKASYH 673
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 178/373 (47%), Gaps = 59/373 (15%)
Query: 5 SGGFVLLGRILMSCFT----PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
SG + G+IL P++VT+NSL+ G C ++ EA RL + + C P VIT
Sbjct: 245 SGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVIT 304
Query: 61 FNTL------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
+ TL A + + M + F PD+VT ++DGLCK G M+
Sbjct: 305 YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMV 364
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
++ PDVVT +++ + L K GK+++A LLE+M++R PN T+NT++DGF K
Sbjct: 365 EKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVD 424
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL- 209
C DV +Y+ LI+GYCK ++DA ++ GI D +Y+++
Sbjct: 425 EGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSML 478
Query: 210 -----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M PP S Y I GL EA+K+ + C
Sbjct: 479 EGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCE 538
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T + LI+GLCK R++ A ++ ++++ G PDV TY +I GFCK + A
Sbjct: 539 PNLYTYSILINGLCKTKRVEDAINVLDVMLEK-GCVPDVATYTSLIDGFCKINKMDAAYQ 597
Query: 313 LLLDMEETGLEPN 325
M ++G EP+
Sbjct: 598 CFKTMRDSGCEPD 610
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 164/355 (46%), Gaps = 52/355 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + LL ++ P+ +N LI GLC G+I A + K + C P+VIT+
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT 166
Query: 63 TL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
+L AL E + E G+ PD V +++GLCK M+
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESGLT--PDTVAYNALLNGLCKQNQLEEVSKLLEEMV 224
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
+ G PD + N + L + GK EEA +LE MI++ P+ TYN+LMDGF SK
Sbjct: 225 EAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMD 284
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
C V +Y LI G+ + + DA + +M GI D TYN L
Sbjct: 285 EAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCL- 343
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+DGL K G + EA ++ + C + T + L++GLCK+G+
Sbjct: 344 ----------------LDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + M+++ G P++VT+N MI GFCK G+ + + +L M+E P+
Sbjct: 388 VDDARLLLEMMLER-GCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 141/322 (43%), Gaps = 65/322 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ +LL +L PN+VTFN++I G C G++ E ++ + + C P+V+T
Sbjct: 385 LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVT 444
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----GMRPDVVTLN 116
++TL IDG CK M D G+ PD + +
Sbjct: 445 YSTL-----------------------------IDGYCKANRMQDAFAILGISPDKASYS 475
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
M + L GK+EEA ++++M ++ P + Y ++ G +
Sbjct: 476 SMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSER 535
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC ++Y+Y+ILING CK + VEDA+++ ML +G PD
Sbjct: 536 GCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKG-----------------CVPDVAT 578
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT+ IDG K + A + F + + C N LI G C+ G ++ A ++ +++
Sbjct: 579 YTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLML 638
Query: 283 QNPGLTPDVVTYNIMIHGFCKE 304
+ G PD TY ++ E
Sbjct: 639 EK-GCNPDAATYFSLMRSLTTE 659
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 30/229 (13%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------- 161
+P T + S+ G + + M+ R +P+ T+NT++ +
Sbjct: 21 KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80
Query: 162 --KG---CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+G C ++Y ILI+G C+ + +++A L EM+ + DA YN L
Sbjct: 81 HFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL------- 133
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I GL K G + A V + CV + T LI G C+ L A
Sbjct: 134 ----------IAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ GLTPD V YN +++G CK+ Q ++ + LL +M E G EP+
Sbjct: 184 LMEK-MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPD 231
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 177/359 (49%), Gaps = 58/359 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
P +++FN +I GLC G++ +A + + + V NVIT+NTL A
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+ +EM + IC P+ VT +IDG CKD M QG++P+VVT N +
Sbjct: 221 DAILKEMRADG--IC-PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
+ L +GK+ EA L + M+ + PN T+N L++GF +G
Sbjct: 278 INGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI 337
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
+V +YNILI+ YCKD N+EDA +L R ML +G+ D +TYN L
Sbjct: 338 TPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARN 397
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M ++ D Y ID L G + +A+++ + + T N +IDG C
Sbjct: 398 LVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYC 457
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G L+ A ++ M+ G +V TYN++I GFCK+ + + ANGLL +M E GL PN
Sbjct: 458 KEGNLRAALNLRSQ-MEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPN 515
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 139/287 (48%), Gaps = 46/287 (16%)
Query: 84 KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
K V +C ++ GL K G M+ + + P +++ N++ + L K GK+ +A
Sbjct: 125 KLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGD 184
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------------GCRHDVYSYNILIN 176
++E M R V+ N TYNTL+DG+ K G + ++NILI+
Sbjct: 185 IIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILID 244
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPP 218
G+CKD+NV A+ + EM +G++ + TYN+L + N + P
Sbjct: 245 GFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKP 304
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ + ++G KN V +A ++F + + T N LID CK ++ A+ ++
Sbjct: 305 NIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALY 364
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G+ PDV TYN +I G C++G + A L+ +M+ L+ +
Sbjct: 365 RIML-GKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKAD 410
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 38/262 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L +++ SC PN++T N+L+ G C + +A LF + PNV T+
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344
Query: 62 NTLALVALNLFEEMVNEFGV--------ICKPDVVTCTNIIDGLCKDGFM---------M 104
N L + A E M + F + +C PDV T +I GLC+ G + M
Sbjct: 345 NIL-IDAYCKDENMEDAFALYRIMLGKGVC-PDVSTYNCLIAGLCRKGDLEAARNLVSEM 402
Query: 105 D-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
D + ++ D++T N++ D+L G+M++A LL+ M ++ + P+ TYNT++DG+
Sbjct: 403 DTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNL 462
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G +V +YN+LI G+CK +EDA L EML +G+ + TY +
Sbjct: 463 RAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522
Query: 210 ---FMAINNVPP-DSHVYTTYI 227
M VP + H+Y +
Sbjct: 523 TEEMMEKGFVPDIEGHLYKVAV 544
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ F ++ L++ +CN L+ GL K+G + ++ +++ + P ++++NI+I+G
Sbjct: 114 EAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRR-IEPTLISFNIVING 172
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
CK G+ KA ++ DM+ G+ N
Sbjct: 173 LCKVGKLNKAGDIIEDMKVRGVSAN 197
>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 493
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 185/378 (48%), Gaps = 62/378 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LG+++ F P++VTF SL+ G C RI EA L ++ +PNV+ +
Sbjct: 122 SRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIY 181
Query: 62 NTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------- 102
NT+ AL LN E+M G+ +PDV+T ++I L G
Sbjct: 182 NTIIDSLCENRQVDTALDVLNHMEKM----GI--RPDVITYNSLITRLFHSGKWGVSARI 235
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
MM G+ PDV+T + M D K+G++ EA + MIQR V+PN TYN+L++G
Sbjct: 236 LSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCI 295
Query: 159 -------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
SKG + +YN L+NGYCK + V+DA+ + M +G+ D T
Sbjct: 296 HGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFT 355
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YNTL+ M V PD + + +DGL ++G + +A+ +
Sbjct: 356 YNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQ 415
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ V+ I T N +I G+CK +++ AW +F L G++PDV+TY M+ G ++
Sbjct: 416 KSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALK-GVSPDVITYTTMMIGLRRKRLW 474
Query: 308 QKANGLLLDM-EETGLEP 324
+A+ L M ++ GL P
Sbjct: 475 LEAHELYRKMKKDDGLMP 492
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 128/302 (42%), Gaps = 56/302 (18%)
Query: 56 PNVITFNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK---------- 99
P+++ F+ L A+ L +E +++ F I D+ + + +ID C+
Sbjct: 71 PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130
Query: 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
G MM G P +VT + + +++EA L++ ++ PN YNT++D
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSL-- 188
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
C++R V+ A+ + M GIR D TYN+L
Sbjct: 189 -------------------CENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKW 229
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PD ++ ID K G +LEA K + + I T N L
Sbjct: 230 GVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSL 289
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I+GLC G L A + + M + G P+ VTYN +++G+CK + A +L M G
Sbjct: 290 INGLCIHGLLDEAKKVLN-FMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDG 348
Query: 322 LE 323
++
Sbjct: 349 VD 350
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 181/401 (45%), Gaps = 97/401 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + ALNL +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TY++++DGF +KGC ++ ++N L
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYC + ++D + L EM G+ AD TTYNTL I G Y G
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL-----------------IHGFYLVG 444
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP--------- 285
+ A+ + + + I TC+ L+DGLC G+LK A ++F ++ ++
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +FN LIK C+ ++ A F K+ P+V+TF TL AL+ F
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF 172
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+M F C+P+VVT T +++GLC++G MM+ G++P +T + D +
Sbjct: 173 HQM---FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 123 SKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G A LL M + + PN Y+ ++D KG D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+++YN +I G+C DA L +EML I D TYN L A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYD 349
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P++ Y++ IDG K + A +F + C + T N LIDG C
Sbjct: 350 EMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ ++ H M GL D TYN +IHGF G A LL +M +GL P+
Sbjct: 410 RIDDGMELLHE-MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
N L A V F EE+ +E G+I P+ +T +++IDG CK M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G P+++T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + + L++G C + ++DA+ + + M G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + PD+ Y++ IDGL K + EA
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T LI+G CK GR+ ++F M G+ + +TY +I G
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF-CEMGRRGIVANAITYITLICG 625
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPD 650
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ PN IT+
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITY 363
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
+++ N + + F ++ C P+++T +IDG C DG M +
Sbjct: 364 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ D T N + G + A LL+ MI + P+ T +TL+DG
Sbjct: 424 TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD 483
Query: 157 ----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K G DV +YNILI+G + +A L EM GI
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TY+++ M + P+ +TT I+G K G V + +++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G K+G + A DIF ++ + G+ PD +T M+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 662
Query: 303 KEGQHQKANGLLLDME 318
+ + ++A +L ++
Sbjct: 663 SKEELKRAVAMLEKLQ 678
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+NILI +C + A+S ++ G+ D T+ TL +
Sbjct: 108 KQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CK G A ++ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 73/264 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----- 55
+G + LL ++ S P++VT ++L+ GLC G++ +A +FK + D
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASH 502
Query: 56 ------PNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
P+V T+N L L A L+EEM + G++ PD +T +++IDGLC
Sbjct: 503 PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR-GIV--PDTITYSSMIDGLC-- 557
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
K +++EA + + M + +PN T+ T
Sbjct: 558 -----------------------KQSRLDEATQMFDSMGSKSFSPNVVTFTT-------- 586
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP 217
LINGYCK V+D + L EM GI A+A TY TL F + N+
Sbjct: 587 -------------LINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNIN 633
Query: 218 PDSHVYTTYI-DGLYKNGFVLEAM 240
++ I G+Y + + M
Sbjct: 634 GALDIFQEMISSGVYPDTITIRNM 657
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 175/338 (51%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P +VTFN+L+ GLC++ +I++A +LF ++ +P+VIT++T+ +AL L
Sbjct: 8 PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
++M E G CKP+VV IID LCKD M+ +G+ PDV T + +
Sbjct: 68 LKKM-EEKG--CKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHD 167
G++ EA L + M++R+V PN T+ L+DG AW KG D
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
VY+YN L++GYC +++A L M +G + +YN L I
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL-----------------I 227
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+G K+G + EA + + + + I T + L+ G C++GR + A ++ M + GL
Sbjct: 228 NGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKE-MCSYGL 286
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+++TY+I++ G CK G +A LL M+E+ +EPN
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPN 324
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 172/356 (48%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNL 71
P+++T++++I GLC G A +L KK+ C PNV+ +NT L A++
Sbjct: 43 PDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDF 102
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F EMV E G+ PDV T ++I+ G C G M+++ + P+ VT ++ D
Sbjct: 103 FSEMVKE-GI--PPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDG 159
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K + EA + E M ++ + P+ TYN L+DG+ S KGC +
Sbjct: 160 LCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPN 219
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP---------- 217
V SYNILING+CK +++A L EM + + D TY+TL V
Sbjct: 220 VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLK 279
Query: 218 --------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
P+ Y+ +DGL K+G + EA ++ A+ K I LI+G+C G
Sbjct: 280 EMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFG 339
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L+ A ++F L G+ P VVTY +MI G K G +A L +M G PN
Sbjct: 340 KLEAARELFSNLFVK-GIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPN 394
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M G++P +VT N + L K+ +A L + M++ P+ TY+T+++G
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC+ +V +YN +I+ CKDR V +A+ EM+ EGI D TY++
Sbjct: 61 TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M NV P+ +T IDGL K + EA VF +
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T N L+DG C ++ A +F+ +M G P+V +YNI+I+G CK G+ +A
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFN-IMDRKGCAPNVRSYNILINGHCKSGRIDEA 239
Query: 311 NGLLLDMEETGLEPN 325
GLL +M L P+
Sbjct: 240 KGLLAEMSHKSLTPD 254
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 43/289 (14%)
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
F + +P +VT ++ GLC +MD G PDV+T + + + L K G
Sbjct: 2 FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTL-------------MDGFAWWSK-GCRHDVYSYNIL 174
A LL+ M ++ PN YNT+ MD F+ K G DV++Y+ +
Sbjct: 62 TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
++G+C V +A SL ++M+ + + T+ L M +
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD + Y +DG + EA K+F+ + C + + N LI+G CK GR+ A
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M + LTPD+ TY+ ++ GFC+ G+ Q+A LL +M GL PN
Sbjct: 242 LLAE-MSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPN 289
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 55/341 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + L +++ PN VTF LI GLC + I EA +F+ + +P+V T
Sbjct: 128 LGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYT 187
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+N L + + +E F NI+D +G P+V + N++
Sbjct: 188 YNALVDGYCSRSQMDEAQKLF------------NIMD---------RKGCAPNVRSYNIL 226
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ K G+++EA LL M + + P+ TY+TLM GF S G
Sbjct: 227 INGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL 286
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
++ +Y+I+++G CK ++++A L + M + + P+ +YT
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQE-----------------SKIEPNIFIYT 329
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+G+ G + A ++FS + T+ T +I GL K G A ++F + N
Sbjct: 330 ILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVN 389
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P+ TYN++I GF + G A L+ +M G +
Sbjct: 390 -GCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + TP++ T+++L++G C GR EA L K++ + PN+IT+
Sbjct: 234 GRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITY 293
Query: 62 NTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGFM----------M 104
++ L L + F ++ +P++ T +I+G+C G +
Sbjct: 294 -SIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLF 352
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+G++P VVT VM L K G EA L M PN+CTY
Sbjct: 353 VKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTY-------------- 398
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
N++I G+ ++ + +AV L EM+ +G AD++T+ L
Sbjct: 399 -------NVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRML 436
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + PN++T++ ++ GLC G + EA L K + +PN+
Sbjct: 268 VGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFI 327
Query: 61 FNTL-----ALVALNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
+ L L E+ N F +P VVT T +I GL K G M
Sbjct: 328 YTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMA 387
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
G P+ T NV+ ++G A L+E M+ + + ++ T+ L D
Sbjct: 388 VNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 179/389 (46%), Gaps = 86/389 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP ++TFN+LI GLC EGR+LEAA L K+ +V+T+ T+ AL
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL +M KPDVV + IID LCKDG M+++G+ P+V T N M
Sbjct: 282 NLLSKMEETH---IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------- 162
D G+ +A LL MI+R++NP+ T+N L+ K
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398
Query: 163 ------------GCRH----------------DVYSYNILINGYCKDRNVEDAVSLCREM 194
C+H DV ++N +I+ YC+ + V++ + L RE+
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ A+ TTYNTL M + V PD+ + G +N +
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+++F I K L N +I G+CK ++ AWD+F L + G+ PDV TYN+
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNV 577
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC + AN L M++ G EP+
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 164/362 (45%), Gaps = 66/362 (18%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRI---------------LEAARLFKKLNVFCCD 55
G++ F P++VTFN+L+ GLC E RI LEA LF ++
Sbjct: 164 FGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223
Query: 56 PNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----- 101
P VITFNTL L A L +MV G DVVT I++G+CK G
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMV---GKGLHIDVVTYGTIVNGMCKMGDTKSA 280
Query: 102 -----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
M + ++PDVV + + D L KDG +A L M+++ + PN TYN ++DG
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 157 ---FAWWSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
F WS R DV ++N LI+ K+ + +A LC EML I D
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400
Query: 203 ATTYNTLFMAINN--------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TYN++ PD + T ID + V E M++ I
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V T N LI G C++ L A D+F ++ + G+ PD +T NI+++GFC+ + +
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH-GVCPDTITCNILLYGFCENEKLE 519
Query: 309 KA 310
+A
Sbjct: 520 EA 521
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 43/284 (15%)
Query: 42 AARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
A L++K+ + N+ +FN L + C D C + L G
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNIL----------------IKCFCD---CHKLSFSLSTFG 165
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ G +PDVVT N + L + ++ EA L M++ ++ +++
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE------ 219
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G V ++N LING C + V +A +L +M+ +G+ D TY T+
Sbjct: 220 IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI------------ 267
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++G+ K G A+ + S + + + +ID LCK G A +F +
Sbjct: 268 -----VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 322
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G+ P+V TYN MI GFC G+ A LL DM E + P+
Sbjct: 323 LEK-GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L I MS + V +N +I G+C ++ EA LF L + +P+V T+N
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV------ 577
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ F C ++ N++ M D G PD T N + K G+++
Sbjct: 578 -----MISGF---CGKSAISDANVLFHK-----MKDNGHEPDNSTYNTLIRGCLKAGEID 624
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMD 155
++ L+ M + + T + D
Sbjct: 625 KSIELISEMRSNGFSGDAFTIKMVAD 650
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 180/365 (49%), Gaps = 57/365 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
+++ F N V++ +L+ GLC G A +L + + P+V+ +NT+
Sbjct: 227 KVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDK 286
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVV 113
LV A + + EM N G+ PDV+T + +I G C G +M + + PDV
Sbjct: 287 LVNEAYDFYTEM-NSRGIF--PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVY 343
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T ++ D L K+GK++EA LL VM + V PN TY+TLMDG+ A
Sbjct: 344 TYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAM 403
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
V SYNI+ING CK ++V++A++L REML + + + TYN+L +
Sbjct: 404 VQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRI 463
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P D YT+ +DGL KN + +A+ +F + T L
Sbjct: 464 TSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTAL 523
Query: 262 IDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
IDGLCK RLK A +F H+L++ G DV TYN+MI G CKEG +A + ME+
Sbjct: 524 IDGLCKGARLKNAQKLFQHILVK--GCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDN 581
Query: 321 GLEPN 325
G P+
Sbjct: 582 GCIPD 586
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 154/345 (44%), Gaps = 71/345 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G F LL + + P++ T+ LI LC EG++ EA L + PNV+T+
Sbjct: 321 GQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTY 380
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
+TL +DG C G M+ + P
Sbjct: 381 STL-----------------------------MDGYCLVGEVHNAKQIFHAMVQTEVNPS 411
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
V + N+M + L K ++EA LL M+ ++V PNT TYN+L+DG
Sbjct: 412 VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMK 471
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+G DV +Y L++G CK++N++ A++L +M GI+
Sbjct: 472 ELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ----------------- 514
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + YT IDGL K + A K+F I C + + T N +I GLCK G L A +
Sbjct: 515 PNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAM 574
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M++ G PD VT+ I+I ++ ++ KA LL +M GL
Sbjct: 575 -KSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 168/424 (39%), Gaps = 100/424 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKG----LCTEGRILE----------AARLF 46
+G+ + F +LG+IL + PN +T +L+KG R++E ++ L
Sbjct: 24 LGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCAIKLPRMIEDRSTRPLMWLSSSLS 83
Query: 47 KKLNVFCCDPNVITF----NTLALVALNLFEEMVNEF-GVIC---KPDVVTCTNIIDGLC 98
+ F TF ++ ++ + V++F G++ P ++ I+ L
Sbjct: 84 HSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGMLLMRNTPSIIEFGKILGSLV 143
Query: 99 K----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K M +G+ PD+VTL+++ + G+M + +L +++ PNT
Sbjct: 144 KMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTI 203
Query: 149 TYNTLMDGFAWWS----------------------------------------------- 161
TLM G
Sbjct: 204 ILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMI 263
Query: 162 --KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
+ R DV YN +I+G CKD+ V +A EM S GI D TY+TL
Sbjct: 264 EDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQL 323
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + N+ PD + YT ID L K G + EA + + + T + L
Sbjct: 324 MGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTL 383
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+DG C +G + A IFH ++Q + P V +YNIMI+G CK +A LL +M
Sbjct: 384 MDGYCLVGEVHNAKQIFHAMVQTE-VNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKN 442
Query: 322 LEPN 325
+ PN
Sbjct: 443 VVPN 446
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 179/389 (46%), Gaps = 86/389 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP ++TFN+LI GLC EGR+LEAA L K+ +V+T+ T+ AL
Sbjct: 217 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 276
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL +M KPDVV + IID LCKDG M+++G+ P+V T N M
Sbjct: 277 NLLSKMEETH---IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 333
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------- 162
D G+ +A LL MI+R++NP+ T+N L+ K
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393
Query: 163 ------------GCRH----------------DVYSYNILINGYCKDRNVEDAVSLCREM 194
C+H DV ++N +I+ YC+ + V++ + L RE+
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 453
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ A+ TTYNTL M + V PD+ + G +N +
Sbjct: 454 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 513
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+++F I K L N +I G+CK ++ AWD+F L + G+ PDV TYN+
Sbjct: 514 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNV 572
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC + AN L M++ G EP+
Sbjct: 573 MISGFCGKSAISDANVLFHKMKDNGHEPD 601
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 165/365 (45%), Gaps = 61/365 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA----------ARLFKKLNVF 52
+ S G++ F P++VTFN+L+ GLC E RI EA LF ++
Sbjct: 156 KLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEI 215
Query: 53 CCDPNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-- 101
P VITFNTL L A L +MV G DVVT I++G+CK G
Sbjct: 216 GLTPVVITFNTLINGLCLEGRVLEAAALVNKMV---GKGLHIDVVTYGTIVNGMCKMGDT 272
Query: 102 --------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
M + ++PDVV + + D L KDG +A L M+++ + PN TYN +
Sbjct: 273 KSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCM 332
Query: 154 MDG---FAWWSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+DG F WS R DV ++N LI+ K+ + +A LC EML I
Sbjct: 333 IDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 392
Query: 200 RADATTYNTLFMAINN--------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
D TYN++ PD + T ID + V E M++
Sbjct: 393 FPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLRE 452
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
I V T N LI G C++ L A D+F ++ + G+ PD +T NI+++GFC+
Sbjct: 453 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH-GVCPDTITCNILLYGFCENE 511
Query: 306 QHQKA 310
+ ++A
Sbjct: 512 KLEEA 516
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 48/284 (16%)
Query: 42 AARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
A L++K+ + N+ +FN L + C D C + L G
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNIL----------------IKCFCD---CHKLSFSLSTFG 165
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ G +PDVVT N + L + ++ EA L M++ +L D
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVET---------GSLFDQMVEI- 215
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G V ++N LING C + V +A +L +M+ +G+ D TY T+
Sbjct: 216 -GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI------------ 262
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++G+ K G A+ + S + + + +ID LCK G A +F +
Sbjct: 263 -----VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 317
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G+ P+V TYN MI GFC G+ A LL DM E + P+
Sbjct: 318 LEK-GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 360
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L I MS + V +N +I G+C ++ EA LF L + +P+V T+N
Sbjct: 519 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV------ 572
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ F C ++ N++ M D G PD T N + K G+++
Sbjct: 573 -----MISGF---CGKSAISDANVLFHK-----MKDNGHEPDNSTYNTLIRGCLKAGEID 619
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMD 155
++ L+ M + + T + D
Sbjct: 620 KSIELISEMRSNGFSGDAFTIKMVAD 645
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 182/401 (45%), Gaps = 97/401 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + AL+L +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKIGDTVSALDLLRKMEEISHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TY++++DGF +KGC ++ ++N L
Sbjct: 342 FEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYC + ++D + L EM G+ AD TTYNTL I G Y G
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTL-----------------IHGFYLVG 444
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP--------- 285
+ A+ + + + I TC+ L+DGLC G+LK A ++F ++ ++
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 174/385 (45%), Gaps = 64/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALVALNLF---EEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
N L A V F EE+ +E G+I P+ +T +++IDG CK M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGII--PNTITYSSMIDGFCKQNRLDAAEHMFYLM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G P+++T N + D ++++ LL M + + +T TYNTL+ GF
Sbjct: 387 ATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDL 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-----------G 198
S G D+ + + L++G C + ++DA+ + + M G
Sbjct: 447 NAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNG 506
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYN L + N + PD+ Y++ IDGL K + EA
Sbjct: 507 VEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F ++G+ + T LI+G CK GR+ ++F M G+ + +TY +I G
Sbjct: 567 QMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELF-CEMGRRGIVANAITYITLICG 625
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F K G A + +M +G+ P+
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPD 650
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 51/269 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+PN++TFN+LI G C RI + L ++ + T+NTL AL+
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L +EM++ +C PD+VTC ++DGLC +G + D G+
Sbjct: 452 LLQEMIS--SGLC-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVE 508
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 509 PDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 568
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMA 212
+ SK +V ++ LINGYCK V+D + L EM GI A+A TY TL F
Sbjct: 569 FDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRK 628
Query: 213 INNVPPDSHVYTTYI-DGLYKNGFVLEAM 240
+ N+ ++ I G+Y + + M
Sbjct: 629 VGNINGALDIFQEMISSGVYPDTITIRNM 657
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ PN IT+
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITY 363
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
+++ N + + F ++ C P+++T +IDG C DG M +
Sbjct: 364 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ D T N + G + A LL+ MI + P+ T +TL+DG
Sbjct: 424 TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKD 483
Query: 157 ----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K G DV +YNILI+G + +A L EM GI
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TY+++ M + P+ +TT I+G K G V + +++
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G K+G + A DIF ++ + G+ PD +T M+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 662
Query: 303 KEGQHQKANGLLLDME 318
+ + ++A +L ++
Sbjct: 663 SKEELKRAVAMLEKLQ 678
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 41/256 (16%)
Query: 89 TCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+C+ + L G + G+ PDVVT N + L + ++ EA L M + PN
Sbjct: 126 SCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVV 185
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
T+ TLM NG C++ + +AV+L M+ +G++ TY T
Sbjct: 186 TFTTLM---------------------NGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224
Query: 209 L-------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ I+++ P+ +Y+ ID L K+G +A +F+ +
Sbjct: 225 IVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEK 284
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N +I G C GR A + +++ ++PDVVTYN +I+ F KEG+ +
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK-ISPDVVTYNALINAFVKEGKFFE 343
Query: 310 ANGLLLDMEETGLEPN 325
A L +M G+ PN
Sbjct: 344 AEELYDEMLPRGIIPN 359
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+ ILI +C + A+S ++ G+ D T+NTL +
Sbjct: 108 KQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CKIG A D+ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 171/347 (49%), Gaps = 49/347 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V +++LI GLC GR+ EA +LF+K+ C+P+V+TF L L + +E
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 239
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
+ C P+V+T +++IDGLCK G + D +G+ P+VVT N +
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 299
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
++ A L+E M P+ TYNTL+DG +K C DV +
Sbjct: 300 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 359
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ LI G+CK ++ A +L +ML + + D T++TL M
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
++ PD + YT+ +DG K G ++EA +V + C + T LID C+ G+
Sbjct: 420 ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 479
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+A+ + ++ N G+ P+V+TY +I GFC G ++A +L +E
Sbjct: 480 VAYKLLEEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARKMLERLER 525
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 173/370 (46%), Gaps = 55/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
+ LL + P+ ++++L+ GLC G+I A ++F+ + C P+V+ ++TL
Sbjct: 131 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIA 190
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A LFE+M C+PDVVT T ++DGLCK M D+
Sbjct: 191 GLCKTGRLDEACKLFEKMRENS---CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
P+V+T + + D L K G++ +A + + MI R + PN TYN+L+ GF
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN------ 207
+ GC D+ +YN LI+G CK +A L +M ++ D TY+
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367
Query: 208 ----------TLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
TLF M V PD ++T ++G G V +A ++ + C +
Sbjct: 368 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 427
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T L+DG CK+GR+ A + M G P+VVTY +I FC+ G+ A LL
Sbjct: 428 YTYTSLVDGFCKVGRMVEARRVLKR-MAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLE 486
Query: 316 DMEETGLEPN 325
+M G++PN
Sbjct: 487 EMVGNGVQPN 496
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 57/371 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
++LL + S PN+VT++++I G C + ++ A +LF+++ C PN++T+NTL
Sbjct: 61 AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-------- 109
A L +EM E G+ +PD + ++ GLCK G +D ++
Sbjct: 121 GLCRNGLMDEAYELLDEM-RERGL--QPDKFSYDTLMAGLCKTG-KIDMALKVFEDNSNG 176
Query: 110 ---PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
PDVV + + L K G+++EA L E M + P+ T+ LMDG
Sbjct: 177 DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 236
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+ C +V +Y+ LI+G CK V DA + + M+ GI + TYN+L
Sbjct: 237 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 296
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M PD Y T IDGL K G EA ++F + C
Sbjct: 297 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 356
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T +CLI G CK+ R+ +A +F +++ L PDVVT++ ++ G+C G A LL
Sbjct: 357 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVL-PDVVTFSTLVEGYCNAGLVDDAERLL 415
Query: 315 LDMEETGLEPN 325
+M + P+
Sbjct: 416 EEMVASDCSPD 426
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 167/372 (44%), Gaps = 87/372 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+VT+N+L+ GLC G + EA L ++ P+ +++TL +AL +
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FE+ N C PDVV + +I GLCK G M + PDVVT + D
Sbjct: 170 FEDNSNG---DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDG 226
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K +++EA +LE M R+ PN TY++L+DG +G +
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +YN LI+G+C V+ A+ L EM + G D TYNTL I
Sbjct: 287 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTL-----------------I 329
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQ--- 283
DGL K G EA ++F + C + T +CLI G CK+ R+ +A +F ML Q
Sbjct: 330 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 389
Query: 284 --------------NPGL----------------TPDVVTYNIMIHGFCKEGQHQKANGL 313
N GL +PDV TY ++ GFCK G+ +A +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449
Query: 314 LLDMEETGLEPN 325
L M + G +PN
Sbjct: 450 LKRMAKRGCQPN 461
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 159/337 (47%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N++T+ +I GLC R+ EA F K+ PN T+N L A L
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+EM E G+ P+VVT + +I G C+ M++ G P++VT N + L
Sbjct: 66 KEM-KESGL--APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
++G M+EA LL+ M +R + P+ +Y+TLM G K C DV
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y+ LI G CK +++A L +M N+ PD +T +D
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRE-----------------NSCEPDVVTFTALMD 225
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL K + EA +V + + C + T + LIDGLCK G+++ A ++F ++ G+
Sbjct: 226 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR-GIE 284
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTYN +IHGFC A L+ +M TG P+
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 321
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 160/381 (41%), Gaps = 90/381 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
TPN++T++SLI GLC G++ +A +FK++ V +PNV+T+N+L AL
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------------------------- 102
L EEM C PD++T +IDGLCK G
Sbjct: 309 LMEEMT---ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 365
Query: 103 -----------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
M+ Q + PDVVT + + + G +++A LLE M+ D +P
Sbjct: 366 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 425
Query: 146 NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY +L+DGF +GC+ +V +Y LI+ +C+ A L
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485
Query: 192 REMLSEGIRADATTYNTLFMAI-------------------NNVPPDSHVYTTYIDGLYK 232
EM+ G++ + TY +L N D Y +DGL +
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCR 545
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G + A+++ AI + LI GLC+ L A ++ + + P+
Sbjct: 546 TGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 605
Query: 293 TYNIMIHGFCKEGQHQKANGL 313
Y +I +EG+H++AN L
Sbjct: 606 AYEAVIQELAREGRHEEANAL 626
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 139/285 (48%), Gaps = 43/285 (15%)
Query: 83 CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C+ +V+T T +IDGLCK M +G P+ T NV+ + K K+ A
Sbjct: 3 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGY 178
LL+ M + + PN TY+T++ GF +K GC ++ +YN L++G
Sbjct: 63 LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDS 220
C++ +++A L EM G++ D +Y+TL + + PPD
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y+T I GL K G + EA K+F + + C + T L+DGLCK RL+ A +
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ TP+V+TY+ +I G CK GQ + A + M G+EPN
Sbjct: 243 -MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 286
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 45/225 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ S +P++ T+ SL+ G C GR++EA R+ K++ C PNV+T+ L
Sbjct: 414 LLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC 473
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMR 109
VA L EEMV G +P+V+T ++I G C G D+ +
Sbjct: 474 RAGKPTVAYKLLEEMV---GNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCK 530
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
D+ VM D L + G+M A LLE + Q P RHD+Y
Sbjct: 531 ADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP-------------------RHDIY 571
Query: 170 SYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAI 213
LI G C+ + + A+ + EM LS R +A Y + +
Sbjct: 572 V--ALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 614
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+C + T +IDGLCK RL A F M+ G P+ TYN++I+GFCK + +
Sbjct: 2 ECEKNVITWTIMIDGLCKANRLPEATTYFAK-MKKKGTVPNEWTYNVLINGFCKVHKVHR 60
Query: 310 ANGLLLDMEETGLEPN 325
A LL +M+E+GL PN
Sbjct: 61 AYLLLKEMKESGLAPN 76
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/357 (32%), Positives = 171/357 (47%), Gaps = 61/357 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ F P++VT+ +LI GLC G A RL + C PNV +
Sbjct: 112 GKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAY 171
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGF 102
NT+ A NLF EMV + G+ PD+ T ++I LC
Sbjct: 172 NTIIDSLCKDRQVTEAFNLFSEMVTK-GI--SPDIFTYNSLIHALCNLCEWKHVATLLNE 228
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D + PDVV+ N + D L K+GK+ EA+ +++ MIQR
Sbjct: 229 MVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG-------------------- 268
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP----- 217
GC +V SYN LINGYCK + ++ A+ L EM + + D TY+TL + +V
Sbjct: 269 GCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDA 328
Query: 218 -------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
P+ Y +D L KN ++ EAM + AI I+ N IDG
Sbjct: 329 IALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDG 388
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+C+ G L+ A D+F L + GL PDV TY+IMI+G C+ G +A+ L +M+E G
Sbjct: 389 MCRAGELEAARDLFSNL-SSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 444
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 144/339 (42%), Gaps = 58/339 (17%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G R+L P+ V FN L+ + L +++ F PN+ T + L
Sbjct: 44 GAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHIL- 102
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
+N F + + + ++ D + +GF RPDVVT + + L K
Sbjct: 103 ----------INSFCHLNRGKIGEALHLFDKMIGEGF------RPDVVTYGTLINGLCKV 146
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G A LL M+Q++ PN V++YN +I+ CKDR V
Sbjct: 147 GNTSAAIRLLGSMVQKNCQPN---------------------VFAYNTIIDSLCKDRQVT 185
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYI 227
+A +L EM+++GI D TYN+L A+ N + PD + T +
Sbjct: 186 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVV 245
Query: 228 DGLYKNGFVLEAMKVFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
D L K G V EA V I C+ + + N LI+G CKI R+ A +F + +
Sbjct: 246 DALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE- 304
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD VTY+ +IHG C + Q A L +M PN
Sbjct: 305 LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPN 343
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 66/303 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--AL 66
LL ++ S P++V+FN+++ LC EG++ EA + K+ C PNVI++NTL
Sbjct: 225 LLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGY 284
Query: 67 VALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC-----KDGFMMDQGMR-----PDV 112
+ ++ + FG +C+ PD VT + +I GLC +D + M P++
Sbjct: 285 CKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNL 344
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------------- 158
VT ++ D L K+ + EA LL+ + +++P+ N +DG
Sbjct: 345 VTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSN 404
Query: 159 WWSKGCRHDVYSYNILINGYCKD---------------------------------RNVE 185
SKG + DV++Y+I+ING C+ RN E
Sbjct: 405 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 464
Query: 186 D--AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
A+ L +EM++ G ADA+T +++ D + D + ++ E + V
Sbjct: 465 TSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQSLKQILRDFCKQKSWIYENVMVL 524
Query: 244 SAI 246
I
Sbjct: 525 QEI 527
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 179/389 (46%), Gaps = 86/389 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP ++TFN+LI GLC EGR+LEAA L K+ +V+T+ T+ AL
Sbjct: 6 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 65
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL +M KPDVV + IID LCKDG M+++G+ P+V T N M
Sbjct: 66 NLLSKMEETH---IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 122
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------- 162
D G+ +A LL MI+R++NP+ T+N L+ K
Sbjct: 123 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 182
Query: 163 ------------GCRH----------------DVYSYNILINGYCKDRNVEDAVSLCREM 194
C+H DV ++N +I+ YC+ + V++ + L RE+
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ A+ TTYNTL M + V PD+ + G +N +
Sbjct: 243 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 302
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+++F I K L N +I G+CK ++ AWD+F L + G+ PDV TYN+
Sbjct: 303 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNV 361
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC + AN L M++ G EP+
Sbjct: 362 MISGFCGKSAISDANVLFHKMKDNGHEPD 390
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 113/256 (44%), Gaps = 39/256 (15%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M++ G+ P V+T N + + L +G++ EA L+ M+ + ++ + TY T+++G
Sbjct: 1 MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ DV Y+ +I+ CKD + DA L EML +GI + TYN
Sbjct: 61 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + PD + I K G + EA K+ + H+
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEML-HR 179
Query: 251 CVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C+ T N +I G CK R A +F ++ +PDVVT+N +I +C+ + +
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVDE 234
Query: 310 ANGLLLDMEETGLEPN 325
LL ++ GL N
Sbjct: 235 GMQLLREISRRGLVAN 250
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L I MS + V +N +I G+C ++ EA LF L + +P+V T+N
Sbjct: 308 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV------ 361
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ F C ++ N++ M D G PD T N + K G+++
Sbjct: 362 -----MISGF---CGKSAISDANVLFHK-----MKDNGHEPDNSTYNTLIRGCLKAGEID 408
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMD 155
++ L+ M + + T + D
Sbjct: 409 KSIELISEMRSNGFSGDAFTIKMVAD 434
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 171/347 (49%), Gaps = 49/347 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V +++LI GLC GR+ EA +LF+K+ C+P+V+TF L L + +E
Sbjct: 299 PDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 358
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
+ C P+V+T +++IDGLCK G + D +G+ P+VVT N +
Sbjct: 359 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
++ A L+E M P+ TYNTL+DG +K C DV +
Sbjct: 419 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 478
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ LI G+CK ++ A +L +ML + + D T++TL M
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 538
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
++ PD + YT+ +DG K G ++EA +V + C + T LID C+ G+
Sbjct: 539 ASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPT 598
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+A+ + ++ N G+ P+V+TY +I GFC G ++A +L +E
Sbjct: 599 VAYRLLEEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARKILERLER 644
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 173/370 (46%), Gaps = 55/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
+ LL + P+ ++++L+ GLC G+I A ++F+ + C P+V+ ++TL
Sbjct: 250 AYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIA 309
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A LFE+M C+PDVVT T ++DGLCK M D+
Sbjct: 310 GLCKAGRLDEACKLFEKMRENS---CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
P+V+T + + D L K G++ +A + + MI R + PN TYN+L+ GF
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN------ 207
+ GC D+ +YN LI+G CK +A L +M ++ D TY+
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 486
Query: 208 ----------TLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
TLF M V PD ++T ++G G V +A ++ + C +
Sbjct: 487 CKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDV 546
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T L+DG CK+GR+ A + M G P+VVTY +I FC+ G+ A LL
Sbjct: 547 YTYTSLVDGFCKVGRMVEARRVLKR-MAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLE 605
Query: 316 DMEETGLEPN 325
+M G++PN
Sbjct: 606 EMVGNGVQPN 615
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 57/371 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
++LL + S PN+VT++++I G C + ++ A +LF+++ C PN++T+NTL
Sbjct: 180 AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 239
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-------- 109
A L +EM E G+ +PD + ++ GLCK G +D ++
Sbjct: 240 GLCRNGLMDEAYELLDEM-RERGL--QPDKFSYDTLMAGLCKTG-KIDMALKVFEDNSNG 295
Query: 110 ---PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
PDVV + + L K G+++EA L E M + P+ T+ LMDG
Sbjct: 296 DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEA 355
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+ C +V +Y+ LI+G CK V DA + + M+ GI + TYN+L
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 415
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M PD Y T IDGL K G EA ++F + C
Sbjct: 416 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 475
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T +CLI G CK+ R+ +A +F +++ L PDVVT++ ++ G+C G A LL
Sbjct: 476 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVL-PDVVTFSTLVEGYCNAGLVDDAERLL 534
Query: 315 LDMEETGLEPN 325
+M + P+
Sbjct: 535 EEMVASDCSPD 545
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 167/372 (44%), Gaps = 87/372 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+VT+N+L+ GLC G + EA L ++ P+ +++TL +AL +
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FE+ N C PDVV + +I GLCK G M + PDVVT + D
Sbjct: 289 FEDNSNG---DCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDG 345
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K +++EA +LE M R+ PN TY++L+DG +G +
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +YN LI+G+C V+ A+ L EM + G D TYNTL I
Sbjct: 406 VVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTL-----------------I 448
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQ--- 283
DGL K G EA ++F + C + T +CLI G CK+ R+ +A +F ML Q
Sbjct: 449 DGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508
Query: 284 --------------NPGL----------------TPDVVTYNIMIHGFCKEGQHQKANGL 313
N GL +PDV TY ++ GFCK G+ +A +
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568
Query: 314 LLDMEETGLEPN 325
L M + G +PN
Sbjct: 569 LKRMAKRGCQPN 580
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 171/352 (48%), Gaps = 46/352 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
TPN+ T+ +I+GLC G + +A L +++ P+ +N + AL + +
Sbjct: 55 ITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKAL 114
Query: 77 NEFGVI-CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKD 125
+ F + C+ +V+T T +IDGLCK M +G P+ T NV+ + K
Sbjct: 115 DYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV 174
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
K+ A LL+ M + + PN TY+T++ GF +K GC ++ +Y
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTY 234
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N L++G C++ +++A L EM G++ D +Y+TL +
Sbjct: 235 NTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN 294
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ PPD Y+T I GL K G + EA K+F + + C + T L+DGLCK RL+
Sbjct: 295 GDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQE 354
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M++ TP+V+TY+ +I G CK GQ + A + M G+EPN
Sbjct: 355 AQQVLET-MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPN 405
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 159/337 (47%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N++T+ +I GLC R+ EA F K+ PN T+N L A L
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+EM E G+ P+VVT + +I G C+ M++ G P++VT N + L
Sbjct: 185 KEM-KESGL--APNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 241
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
++G M+EA LL+ M +R + P+ +Y+TLM G K C DV
Sbjct: 242 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 301
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y+ LI G CK +++A L +M N+ PD +T +D
Sbjct: 302 VAYSTLIAGLCKAGRLDEACKLFEKMRE-----------------NSCEPDVVTFTALMD 344
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL K + EA +V + + C + T + LIDGLCK G+++ A ++F ++ G+
Sbjct: 345 GLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVR-GIE 403
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTYN +IHGFC A L+ +M TG P+
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 440
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 160/381 (41%), Gaps = 90/381 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
TPN++T++SLI GLC G++ +A +FK++ V +PNV+T+N+L AL
Sbjct: 368 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 427
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------------------------- 102
L EEM C PD++T +IDGLCK G
Sbjct: 428 LMEEMT---ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 484
Query: 103 -----------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
M+ Q + PDVVT + + + G +++A LLE M+ D +P
Sbjct: 485 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 544
Query: 146 NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY +L+DGF +GC+ +V +Y LI+ +C+ A L
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604
Query: 192 REMLSEGIRADATTYNTLFMAI-------------------NNVPPDSHVYTTYIDGLYK 232
EM+ G++ + TY +L N D Y +DGL +
Sbjct: 605 EEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCR 664
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G + A+++ AI + LI GLC+ L A ++ + + P+
Sbjct: 665 TGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAE 724
Query: 293 TYNIMIHGFCKEGQHQKANGL 313
Y +I +EG+H++AN L
Sbjct: 725 AYEAVIQELAREGRHEEANAL 745
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 21/209 (10%)
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
N L E +++ TC + L +G W G +V++Y ++I G CK +++ A L
Sbjct: 28 NRLFEALLRARRIDETC--HILKNG---WPPGITPNVFTYAVVIQGLCKSGDLDKACELL 82
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHV---------------YTTYIDGLYKNGFV 236
EM G DA YN + A+ + +T IDGL K +
Sbjct: 83 EEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRL 142
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA F+ + V T N LI+G CK+ ++ A+ + M+ GL P+VVTY+
Sbjct: 143 PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE-MKESGLAPNVVTYST 201
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IHGFC++ + A L M E G PN
Sbjct: 202 VIHGFCRQTKVDTAYKLFRQMVENGCMPN 230
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 45/225 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ S +P++ T+ SL+ G C GR++EA R+ K++ C PNV+T+ L
Sbjct: 533 LLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFC 592
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMR 109
VA L EEMV G +P+V+T ++I G C G D+ +
Sbjct: 593 RAGKPTVAYRLLEEMV---GNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCK 649
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
D+ VM D L + G+M A LLE + Q P RHD+Y
Sbjct: 650 ADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPP-------------------RHDIY 690
Query: 170 SYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAI 213
LI G C+ + + A+ + EM LS R +A Y + +
Sbjct: 691 V--ALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 733
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 65/283 (22%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN--------------- 151
G+ P+V T V+ L K G +++A LLE M + P+ YN
Sbjct: 54 GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKA 113
Query: 152 -----------------TLMDGF--------------AWWSKGCRHDVYSYNILINGYCK 180
++DG KG + ++YN+LING+CK
Sbjct: 114 LDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCK 173
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
V A L +EM G+ + TY+T+ M N P+
Sbjct: 174 VHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVT 233
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T + GL +NG + EA ++ + + + L+ GLCK G++ +A +F
Sbjct: 234 YNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED-N 292
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N PDVV Y+ +I G CK G+ +A L M E EP+
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPD 335
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 157 FAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI- 213
F W SK G H+VY+YN L + R +++ + + GI + TY + +
Sbjct: 11 FHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLC 70
Query: 214 -----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ PD+ +Y I L K +A+ F ++ +C +
Sbjct: 71 KSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM---ECEKNVI 127
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T +IDGLCK RL A F M+ G P+ TYN++I+GFCK + +A LL +
Sbjct: 128 TWTIMIDGLCKANRLPEATTYFAK-MKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 186
Query: 317 MEETGLEPN 325
M+E+GL PN
Sbjct: 187 MKESGLAPN 195
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 183/389 (47%), Gaps = 86/389 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP ++TFN+LI GLC EGR+LEAA L K+ +V+T+ T+ AL
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL +M KPDVV + IID LCKDG M+++G+ P+V T N M
Sbjct: 282 NLLSKMEETH---IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPN--------------------------------- 146
D G+ +A LL MI+R++NP+
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398
Query: 147 --TCTYNTLMDGFAWWSK--GCRH--------DVYSYNILINGYCKDRNVEDAVSLCREM 194
T TYN+++ GF ++ +H DV ++N +I+ YC+ + V++ + L RE+
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ A+ TTYNTL M + V PD+ + G +N +
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+++F I K L N +I G+CK ++ AWD+F L + G+ PDV TYN+
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNV 577
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC + AN L M++ G EP+
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 166/370 (44%), Gaps = 66/370 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRI---------------LEAARLFK 47
+ S G++ F P++VTFN+L+ GLC E RI LEA LF
Sbjct: 156 KLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFD 215
Query: 48 KLNVFCCDPNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC 98
++ P VITFNTL L A L +MV G DVVT I++G+C
Sbjct: 216 QMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV---GKGLHIDVVTYGTIVNGMC 272
Query: 99 KDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G M + ++PDVV + + D L KDG +A L M+++ + PN
Sbjct: 273 KMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVF 332
Query: 149 TYNTLMDG---FAWWSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYN ++DG F WS R DV ++N LI+ K+ + +A LC EM
Sbjct: 333 TYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEM 392
Query: 195 LSEGIRADATTYNTLFMAINN--------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
L I D TYN++ PD + T ID + V E M
Sbjct: 393 LHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGM 452
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ I V T N LI G C++ L A D+F ++ + G+ PD +T NI+++G
Sbjct: 453 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH-GVCPDTITCNILLYG 511
Query: 301 FCKEGQHQKA 310
FC+ + ++A
Sbjct: 512 FCENEKLEEA 521
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 43/284 (15%)
Query: 42 AARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
A L++K+ + N+ +FN L + C D C + L G
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNIL----------------IKCFCD---CHKLSFSLSTFG 165
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ G +PDVVT N + L + ++ EA L M++ ++ +++
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE------ 219
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G V ++N LING C + V +A +L +M+ +G+ D TY T+
Sbjct: 220 IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI------------ 267
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++G+ K G A+ + S + + + +ID LCK G A +F +
Sbjct: 268 -----VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 322
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G+ P+V TYN MI GFC G+ A LL DM E + P+
Sbjct: 323 LEK-GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 172/363 (47%), Gaps = 51/363 (14%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL 71
G+++ F P++VT SL+ G C R EA L ++ F PNV+ +NT+ + L
Sbjct: 138 GKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTV-INGLCK 196
Query: 72 FEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
++ N V + D VT +I GL G M+ + + P+V+
Sbjct: 197 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------------- 160
+ D K+G + EA L + MI+R V PN TYN+L++GF
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
SKGC DV +YN LI G+CK + VED + L EM +G+ DA TYNTL
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 376
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M V PD Y +D L NG + +A+ + + + + I T N +I
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 436
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ +LK AW +F L + G+ PD + Y MI G C++G ++A+ L M+E G
Sbjct: 437 QGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGF 495
Query: 323 EPN 325
P+
Sbjct: 496 MPS 498
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++ PN+ T+NSLI G C G + +A +F + C P+V+T+NTL
Sbjct: 276 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 335
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ LF EM + G++ D T +I G C+ G M+D G+ P
Sbjct: 336 KSKRVEDGMKLFCEMTYQ-GLV--GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSP 392
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW--- 159
D+VT N++ D L +GK+E+A ++E + + +++ + TYN ++ G AW
Sbjct: 393 DIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLF 452
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + D +Y +I+G C+ +A LCR M +G Y+
Sbjct: 453 RSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 119/274 (43%), Gaps = 53/274 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LL ++ PN++ F +LI EG +LEA L+K++ PNV T+
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +F+ MV++ C PDVVT +I G CK DG
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKG---CFPDVVTYNTLITGFCKSKRVEDGMKLFCE 349
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M QG+ D T N + + GK+ A + M+ V+P+ TYN L+D K
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 163 GCRH--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ +YNI+I G C+ +++A L R + +G++
Sbjct: 410 IEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK-------- 461
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
PD+ Y T I GL + G EA K+
Sbjct: 462 ---------PDAIAYITMISGLCRKGLQREADKL 486
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 171/355 (48%), Gaps = 56/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++++FN L+ GLC G+I A F+K++ C PNVIT++ L L N + V
Sbjct: 78 DVISFNILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSVLIDGLCKANRVSQAVELL 136
Query: 80 GVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+ C PDV+T T ++DGLCK+ M+D G P++VT N + L +
Sbjct: 137 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 196
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSY 171
++ +A L+ M R PN TY TL+DG KG D+ Y
Sbjct: 197 RRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIY 256
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------------------LFMAI 213
N+LING CK V+++++L R +S GI+ D TY++ L++
Sbjct: 257 NMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 316
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PPD +Y+T IDGL K G V EA ++ + C + T + LIDGLCK GR+
Sbjct: 317 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV-- 374
Query: 274 AWDIFHML---MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D H+L M G P +TYN +I G C +A L+ +ME + P+
Sbjct: 375 --DEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPS 427
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 174/386 (45%), Gaps = 82/386 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VT+NSLI GLC A LF+ + C P+++T+NTL A+ L
Sbjct: 8 PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67
Query: 72 FEEMVNE-------FGVI-----------------------CKPDVVTCTNIIDGLCKDG 101
F+EM++ F ++ C P+V+T + +IDGLCK
Sbjct: 68 FQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKAN 127
Query: 102 ----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
M +G PDV+T ++ D L K+ K+ A +L M+ PN TYN
Sbjct: 128 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 187
Query: 152 TLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+L+ G +GC +V +Y LI+G CK V+DA ++ +M+ +
Sbjct: 188 SLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK 247
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
G D YN L + + PD Y++ I GL ++ + EA
Sbjct: 248 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 307
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++ + + C + + LIDGLCK G++ A+D++ +M G DVVTY+ +I
Sbjct: 308 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE-VMTGDGCDADVVTYSTLID 366
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G CK G+ +A+ LL M G P+
Sbjct: 367 GLCKAGRVDEAHLLLARMVRMGTPPS 392
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 56/366 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S LL + +P+++T+ L+ GLC E ++ A + +++ C PN++T+N
Sbjct: 128 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 187
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+L AL L +M C P+VVT +IDGLCK G M
Sbjct: 188 SLLHGLCRARRVSDALALMRDMTCRG---CTPNVVTYGTLIDGLCKVGRVKDACAMLADM 244
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+D+G PD++ N++ + L K +++E+ LL + + P+ TY++++ G
Sbjct: 245 IDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 304
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S+GC DV Y+ LI+G CK V++A L M +G AD TY+TL
Sbjct: 305 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTL 364
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M PP + Y + I GL + EA+++ + C
Sbjct: 365 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 424
Query: 252 VLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T N LI G+C++ R+ A D F ++ N G+ PD +TY+I++ G K +
Sbjct: 425 APSAVTYNILIHGMCRMERVDSAALDYFQEMIDN-GVIPDHITYSILLEGLKKSKDLHEL 483
Query: 311 NGLLLD 316
L+LD
Sbjct: 484 RHLVLD 489
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M D G P+VVT N + D L K+ + + A L E M + +P+ TYNTL+DG K
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 163 GCR-------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
R HDV S+NIL+ G C+ +E A+ R+M
Sbjct: 61 LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKM--------------- 105
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P+ Y+ IDGL K V +A+++ ++ C + T L+DGLCK
Sbjct: 106 ---DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKES 162
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ AW++ ++ + G P++VTYN ++HG C+ + A L+ DM G PN
Sbjct: 163 KVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 217
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 133/300 (44%), Gaps = 75/300 (25%)
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C+P+VVT ++IDGLCK+ M P +VT N + D L + GK+E A
Sbjct: 6 CEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAM 65
Query: 133 CLLEVMIQR---DV------------------------------NPNTCTYNTLMDGF-- 157
L + M+ R DV +PN TY+ L+DG
Sbjct: 66 ALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCK 125
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ ++GC DV +Y IL++G CK+ V A + REML G + T
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
YN+L + GL + V +A+ + + C + T LIDGL
Sbjct: 186 YNSL-----------------LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 228
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK+GR+K A + ++ G TPD++ YN++I+G CK Q ++ LL G++P+
Sbjct: 229 CKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 121/266 (45%), Gaps = 31/266 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +L ++ TP+++ +N LI GLC ++ E+ L ++ P+V+T
Sbjct: 231 VGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVT 290
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
++++ L N +E + C PDV+ + +IDGLCK G M
Sbjct: 291 YSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMT 350
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
G DVVT + + D L K G+++EA+ LL M++ P+T TYN+L+ G
Sbjct: 351 GDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLD 410
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVED-AVSLCREMLSEGIRADATTYNTL 209
C +YNILI+G C+ V+ A+ +EM+ G+ D TY+ L
Sbjct: 411 EAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSIL 470
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGF 235
+ + +D + + G+
Sbjct: 471 LEGLKKSKDLHELRHLVLDQMVQLGY 496
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 188/410 (45%), Gaps = 90/410 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL +++M P++V++ ++I GLC ++ EA R+ K+ C PNVIT+
Sbjct: 94 RVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYG 153
Query: 63 TLA--------------LV------------------------------ALNLFEEMVNE 78
TL LV AL LF+EM E
Sbjct: 154 TLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEM--E 211
Query: 79 FGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKM 128
C PDV T + I+D L K G M+ +G P+VVT + + L K GK+
Sbjct: 212 ESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKL 271
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
+EA LL+ M + +PN TYNT++DG + GC+ +V +Y +L
Sbjct: 272 DEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 331
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
++ +CK EDA+ L M+ +G + TYN+L M
Sbjct: 332 LDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 391
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y T I GL K V E + + + ++ CV I T N +ID +CK R+ IA++
Sbjct: 392 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYE 451
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM-EETGLEPN 325
+F+ L+Q G TP++VTYN ++HG CK + +A LL +M + G P+
Sbjct: 452 LFN-LIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPD 500
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 179/377 (47%), Gaps = 55/377 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVI 59
+G G L+ ++ + PN +T+N+++ GLC+ ++ A +LFK++ C P+V
Sbjct: 162 VGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVF 221
Query: 60 TFNTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
T++T+ +LV A L E MV++ C P+VVT ++++ GLCK G
Sbjct: 222 TYSTIVDSLVKSGKVDDACRLVEAMVSKG---CSPNVVTYSSLLHGLCKAGKLDEATALL 278
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M G P++VT N + D K G+++EA LLE M+ PN TY L+D F
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
KG ++++YN L++ +CK VE A L M+ +G + +Y
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NT+ M NN PD + T ID + K V A ++F+ I
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQE 458
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
C + T N L+ GLCK R A + + + G +PD++TYN +I G CK +
Sbjct: 459 SGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVD 518
Query: 309 KANGLLLDMEETGLEPN 325
+A L L M GL P+
Sbjct: 519 RAYKLFLQMLSDGLAPD 535
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 182/409 (44%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL R+ S +PN+VT+N++I G C GRI EA L +++ C PNV+T+
Sbjct: 269 GKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTY 328
Query: 62 NTL---------ALVALNLFEEMVNEFGVI------------------------------ 82
L A A+ L E MV E G +
Sbjct: 329 TVLLDAFCKCGKAEDAIGLVEVMV-EKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 387
Query: 83 ---CKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDNLSKDGKME 129
C P+VV+ +I GLCK +G ++ + M PD+VT N + D + K +++
Sbjct: 388 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 447
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNIL 174
A L ++ + PN TYN+L+ G + GC D+ +YN +
Sbjct: 448 IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTV 507
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
I+G CK + V+ A L +MLS+G+ D TY+ + M N
Sbjct: 508 IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGF 567
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P + Y T IDG K G + +A+++ + + + T + ID L K GRL+ A +
Sbjct: 568 DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGE 627
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ GL PD VTYN ++ GFC + + A L M + G EP+
Sbjct: 628 LLETMLR-AGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPD 675
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/340 (31%), Positives = 163/340 (47%), Gaps = 68/340 (20%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
VL R + P+ VT+N++I GL R+ +A RL +++ PNV ++NT+
Sbjct: 30 VLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 89
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
AL L E+MV C PDVV+ T +I+GLCK +DQ
Sbjct: 90 CKANRVENALWLLEQMVMRG---CPPDVVSYTTVINGLCK----LDQ------------- 129
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
++EA +++ MIQR PN TY TL+DGF +G R
Sbjct: 130 --------VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ +YN +++G C R ++ A+ L +EM G + PPD Y+T
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESG----------------SCPPDVFTYST 225
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+D L K+G V +A ++ A+ + C + T + L+ GLCK G+L A + M
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR-MTRS 284
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +P++VTYN +I G CK G+ +A LL +M + G +PN
Sbjct: 285 GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 324
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 108/259 (41%), Gaps = 73/259 (28%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITF 61
R + L I S TPN+VT+NSL+ GLC R +A L +++ C P++IT+
Sbjct: 445 RVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 504
Query: 62 NTL---------ALVALNLFEEMVNE------------FGVICK---------------- 84
NT+ A LF +M+++ +CK
Sbjct: 505 NTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 564
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P +T +IDG CK G ++ +G PDVVT ++ D LSK G++ +
Sbjct: 565 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 624
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LLE M++ + P+T TYNTL+ GF C EDAV L
Sbjct: 625 AGELLETMLRAGLVPDTVTYNTLLKGF---------------------CDASRTEDAVDL 663
Query: 191 CREMLSEGIRADATTYNTL 209
M G D TY TL
Sbjct: 664 FEVMRQCGCEPDNATYTTL 682
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L + P+ VT+N+L+KG C R +A LF+ + C+P+ T+
Sbjct: 620 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATY 679
Query: 62 NTLA--LVALNLFEEMVNE 78
TL LV +++++ E
Sbjct: 680 TTLVGHLVDKKSYKDLLAE 698
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 185/409 (45%), Gaps = 93/409 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---NVFCCDPN 57
M R GF +L N V FN+L++GL E ++ +A LFKKL N+ C+PN
Sbjct: 120 MHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVRENI--CEPN 177
Query: 58 VITFNTL------------ALVALNLFEEMVNE---------FGVICK------------ 84
+ + T+ A L L E+ + CK
Sbjct: 178 EVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLN 237
Query: 85 --------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
PD+ T + +ID LCK M+ + P+V T N + D L K+G
Sbjct: 238 EMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEG 297
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K+E+A ++ MI++ V+P+ TYN ++DG+ + +K ++ SYN
Sbjct: 298 KVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYN 357
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
ILINGY + + +++A+ +CRE+ +G++ T N L + +
Sbjct: 358 ILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA 417
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD + + T + G +KNG V EAM F + + I+ +IDGLCK G+L A
Sbjct: 418 GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKA 477
Query: 275 WDIFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
F L P GL PDV+TY MI G+C+EG +A +L ME+ G
Sbjct: 478 HATFEKL---PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 89/356 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + PN ++ +I C +G + A L ++ P++ T+
Sbjct: 192 GHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTY 251
Query: 62 NTL--ALVALN-------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+TL AL L+ LF EM++ + P+V T ++IDGLCK+G +
Sbjct: 252 STLIDALCKLSQWENVRTLFLEMIH---LNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRY 308
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G+ PDV+T N++ D G+++ A + + MI + + PN +YN L++G+A K
Sbjct: 309 MIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKK 368
Query: 163 ------GCRH-------------------------------------------DVYSYNI 173
CR D+Y++
Sbjct: 369 IDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCT 428
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
L+ GY K+ VE+A+S ++ + Y + + +
Sbjct: 429 LLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIG 488
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD YT I G + G + EA + + ++ C+ T N ++ G + ++
Sbjct: 489 LHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKV 544
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 101/230 (43%), Gaps = 36/230 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++++N LI G + +I EA ++ ++++ P+++T N L A N
Sbjct: 351 PNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNF 410
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD--VVTLNVMTDN 121
F+EM++ + PD+ T ++ G K+G + + + R D + + D
Sbjct: 411 FDEMLSAGHI---PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDG 467
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K+GK+++A+ E + ++P+ TY ++ G+ GC D
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLAD 527
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+YN+++ G+ + V + + E+ + +A T L I P
Sbjct: 528 NRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDIIAEDP 577
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L+ GL ++K A +F L++ P+ V Y +++G CK+G QKA LL ME
Sbjct: 146 NTLLRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLME 205
Query: 319 ETGLEPN 325
+ +PN
Sbjct: 206 QGSTKPN 212
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 187/368 (50%), Gaps = 48/368 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L F + V++ +LI G+C G A +L ++++ +PNV+ +
Sbjct: 147 GQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMY 206
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NT L A NLF EM + G+ +VVT + II G C G + +
Sbjct: 207 NTIIDCLCKRKLVSEACNLFSEMSVK-GI--SANVVTYSAIIHGFCIVGKLTEALGFLNE 263
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
+ + PDV N + D L K+GK++EA +L V+++ + PN TYNTL+DG+A
Sbjct: 264 MVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVF 323
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---- 212
G DV+SYNI+IN CK + VE+A++L +EM + + + TYN+L
Sbjct: 324 NAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKS 383
Query: 213 ---------INNVPPDSH-----VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
I+ + H Y + I+GL KNG + +A+ + + + + + T
Sbjct: 384 GRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTL 443
Query: 259 NCLIDG-LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N L+ G LCK RLK A +F L+ + G P+V TYNI+I+G CKEG +A L M
Sbjct: 444 NILLHGLLCKGKRLKNAQGLFQDLL-DKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKM 502
Query: 318 EETGLEPN 325
E++G PN
Sbjct: 503 EDSGCSPN 510
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 163/388 (42%), Gaps = 76/388 (19%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
R+L TP ++ FN ++ L ++L + P+ T N L L
Sbjct: 53 RMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLG 112
Query: 68 ALNL-FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
+NL F + +PD VT T +I GLC G ++ QG R D V+
Sbjct: 113 QINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYG 172
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-------------GFAWWS-K 162
+ + + K G+ A LL + R PN YNT++D F+ S K
Sbjct: 173 TLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVK 232
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------- 215
G +V +Y+ +I+G+C + +A+ EM+ + I D YNTL A++
Sbjct: 233 GISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEA 292
Query: 216 -----------VPPDSHVYTTYIDGLYKNGF---------------------------VL 237
+ P+ Y T IDG K+ F V
Sbjct: 293 KNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVE 352
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA+ ++ + V T N LIDGLCK GR+ AWD+ M + G +V+TYN +
Sbjct: 353 EALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDE-MHDRGHHANVITYNSL 411
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+G CK GQ KA L+ M++ G++P+
Sbjct: 412 INGLCKNGQLDKAIALINKMKDQGIQPD 439
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 62/338 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L +++ P++ +N+L+ L EG++ EA + + C PNVIT
Sbjct: 251 VGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVIT 310
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVM 118
+NTL IDG K F + G+ PDV + N+M
Sbjct: 311 YNTL-----------------------------IDGYAKHVFNAVGLMGVTPDVWSYNIM 341
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------FAW------WSKGC 164
+ L K ++EEA L + M Q+++ PNT TYN+L+DG +AW +G
Sbjct: 342 INRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGH 401
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +YN LING CK+ ++ A++L +M +GI+ D T N L +
Sbjct: 402 HANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGL----------- 450
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
L K + A +F + + + T N +I G CK G L A+ + M++
Sbjct: 451 -----LCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYAL-QSKMED 504
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G +P+ +T+ I+I ++G+ KA LL +M GL
Sbjct: 505 SGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARGL 542
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 168/340 (49%), Gaps = 56/340 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F PN +T+N+L+ GLC GR+ +A L++++ P+V+T+NTL + +E +
Sbjct: 81 FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEAL 140
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
F K PDVVT +I+G CK M+ + + PDVVT N + + L
Sbjct: 141 KIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGL 200
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRHD 167
K+G+++EA L+ + + +PN TY+TL+ G + GC+ D
Sbjct: 201 CKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ SYN LI+G +++ V +A+ L +L +G + TYN L I
Sbjct: 258 IVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNIL-----------------I 300
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNP 285
DGL K V EA ++FS + H T IDGLCK GR++ D ML M
Sbjct: 301 DGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE---DALLMLKDMDEK 357
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV++N +I+G CKE + +A LL ME G PN
Sbjct: 358 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 173/359 (48%), Gaps = 53/359 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTL--ALVALNLFEEM 75
F+PN++T+++LI GLC E R LE+AR L +K+ + C P+++++N L L E
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277
Query: 76 VNEFGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+ FG + + P+V T +IDGL K+ ++ G+ PD +T V D
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 337
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K G++E+A +L+ M ++ P+ ++N +++G +KGC +
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN-------------------T 208
S+N LI G C+ + A++ +EML G++ TYN T
Sbjct: 398 AISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAIT 457
Query: 209 LFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
LF A+ PD Y+ IDGL K G + +A ++ A+ C+ + T N LI GLC
Sbjct: 458 LFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC 517
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ A ++F + M G PD +TY +I CK+ KA L E G+ P
Sbjct: 518 GLDKVDEALELF-VAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPT 575
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 168/353 (47%), Gaps = 61/353 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L R++ P++VT+NSL+ GLC GR+ EA L PNVIT++TL
Sbjct: 177 ILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGF---SPNVITYSTLISGLC 233
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMR 109
A L E+MV CKPD+V+ +I GL ++ G ++ QG
Sbjct: 234 RELRRLESARQLLEKMVLNG---CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYE 290
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------- 160
P+V T N++ D L K+ ++ EA L +++ + P+ TY +DG
Sbjct: 291 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 350
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KGC DV S+N +ING CK++ V++A L M ++G +A ++NTL
Sbjct: 351 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL------ 404
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI---GRLK 272
I G + G +AM F + T+ T N L+DGLCK GR+K
Sbjct: 405 -----------ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F +++ G PDVVTY+ +I G K G+ A LL ME G PN
Sbjct: 454 EAITLFDAMIEK-GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 505
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 178/355 (50%), Gaps = 52/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L R++ + ++P++VT+N+L+ G C G++ EA ++F P+V+T+
Sbjct: 99 GRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTY 158
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD 105
N L A + + MV+E V PDVVT ++++GLCK+G ++D
Sbjct: 159 NALINGFCKADKLDEAQRILQRMVSESLV---PDVVTYNSLVNGLCKNGRVDEARMLIVD 215
Query: 106 QGMRPDVVTLNVMTDNLSKD-GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----- 159
+G P+V+T + + L ++ ++E A LLE M+ P+ +YN L+ G A
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275
Query: 160 ---------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G +V +YNILI+G K+ V +A L ++ G+ DA T
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT----- 330
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
YT +IDGL K G V +A+ + + CV + + N +I+GLCK R
Sbjct: 331 ------------YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ M+ G +P+ +++N +I G C+ G+ +KA +M + G++P
Sbjct: 379 VDEA-EVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPT 432
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 161/378 (42%), Gaps = 90/378 (23%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLALVALNLFE 73
L+ ++P+ T L++ L G+I +A R ++L V CD + TFN
Sbjct: 8 LVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCD--ISTFNIY--------- 56
Query: 74 EMVNEFGVICKPDVV-TCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+C+ + + DG+ K GF P+ +T N + L G+M +A
Sbjct: 57 -----ISGLCRASRIGDAQTVFDGMRKHGFW------PNRITYNALLSGLCNGGRMSDAQ 105
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
L E MI+ +P+ TYNTL+ GF +G DV +YN LING+
Sbjct: 106 ALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGF 165
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------------------- 210
CK +++A + + M+SE + D TYN+L
Sbjct: 166 CKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITY 225
Query: 211 -----------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
M +N PD Y I GL + V EA+K+F ++
Sbjct: 226 STLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVL 285
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T N LIDGL K R+ A+++F L+++ GL PD +TY + I G CK G+
Sbjct: 286 RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKH-GLEPDAITYTVFIDGLCKAGRV 344
Query: 308 QKANGLLLDMEETGLEPN 325
+ A +L DM+E G P+
Sbjct: 345 EDALLMLKDMDEKGCVPD 362
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 143/312 (45%), Gaps = 54/312 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + F L ++ P+ +T+ I GLC GR+ +A + K ++ C P+V++ N
Sbjct: 308 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 367
Query: 63 TLALVALNLFEEMVNEFGVI--------CKPDVVTCTNIIDGLCKDGF----------MM 104
A++ E+ V+E V+ C P+ ++ +I G C+ G M+
Sbjct: 368 --AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 425
Query: 105 DQGMRPDVVTLNVMTDNLSK---DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G++P VVT N++ D L K +G+++EA L + MI++ P+ TY+ L+DG
Sbjct: 426 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 485
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A +KGC +VY+YN LI+G C V++A+ L M+ +G
Sbjct: 486 KLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKG--------- 536
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD+ Y T I L K V +A+ +F V T LIDGLC
Sbjct: 537 --------CVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCA 588
Query: 268 IGRLKIAWDIFH 279
+ R+ A +
Sbjct: 589 VARVDEALKLLQ 600
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 125/279 (44%), Gaps = 56/279 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR ++L + P++V+ N++I GLC E R+ EA L + C PN I+F
Sbjct: 342 GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 401
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD------------ 100
NTL A+ F+EM+ GV KP VVT ++DGLCK
Sbjct: 402 NTLICGQCRAGKWKKAMTTFKEMLKR-GV--KPTVVTYNILVDGLCKARQEGRIKEAITL 458
Query: 101 -GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M+++G PDVVT + + D L K GK+++A LL M + PN TYN+L+ G
Sbjct: 459 FDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCG 518
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
A KGC D +Y +I+ CK V+ A++L L G
Sbjct: 519 LDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG------- 571
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
V P S +Y + IDGL V EA+K+
Sbjct: 572 ----------VVPTSGMYFSLIDGLCAVARVDEALKLLQ 600
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/420 (29%), Positives = 184/420 (43%), Gaps = 100/420 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S ++ + PN+VTF +L+ GLC EGRI+EA L ++ P IT+
Sbjct: 164 RVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYG 223
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
T+ + ALNL +M +I P+VV + IID LCKDG
Sbjct: 224 TIVDGMCKKGDTVSALNLLRKMEEVSHII--PNVVIYSAIIDSLCKDGRHSDAQNLFTEM 281
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M+++ + PDVVT N + + K+GK
Sbjct: 282 QEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA L + M+ R + PNT TYN+++DGF +KGC DV+++ L
Sbjct: 342 FEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 401
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+GYC + ++D + L EM G+ A+ TYNTL M + V
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-----------TIETCNCLIDGL 265
PD T +DGL NG + +A+++F A+ K L + T N LI GL
Sbjct: 462 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGL 521
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ A +++ M + G+ PD +TY+ MI G CK+ + +A + + M PN
Sbjct: 522 INEGKFLEAEELYEE-MPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 173/386 (44%), Gaps = 66/386 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++ T+NS+I G C+ GR +A +L +++ P+V+T+
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328
Query: 62 NTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A V A L++EM+ G+I P+ +T ++IDG CK
Sbjct: 329 NALINAFVKEGKFFEAAELYDEMLPR-GII--PNTITYNSMIDGFCKQDRLDAAEDMFYL 385
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G PDV T + D ++++ LL M +R + NT TYNTL+ GF
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 445
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE----------- 197
S G D+ + N L++G C + ++DA+ + + M
Sbjct: 446 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 505
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G+ D TYN L M + PD+ Y++ IDGL K + EA
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++F ++G+ + T N LI+G CK GR+ ++F M G+ D + Y +I+
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF-CEMGRRGIVADAIIYITLIY 624
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF K G A + +M +G+ P+
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPD 650
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 153/356 (42%), Gaps = 56/356 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +FN LIK C+ ++ A F K+ P+V+TF TL AL+ F
Sbjct: 113 DIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFF 172
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+M F C+P+VVT T +++GLC++G MM+ G++P +T + D +
Sbjct: 173 HQM---FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 123 SKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G A LL M + + PN Y+ ++D KG D
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+++YN +I G+C DA L +EML I D TYN L A
Sbjct: 290 LFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYD 349
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P++ Y + IDG K + A +F + C + T LIDG C
Sbjct: 350 EMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAK 409
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ ++ H M GL + VTYN +IHGFC G A L M +G+ P+
Sbjct: 410 RIDDGMELLHE-MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 464
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 147/343 (42%), Gaps = 100/343 (29%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P++ TF +LI G C RI + L ++ N +T+NTL AL+
Sbjct: 392 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 451
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L ++M++ GV PD+VTC ++DGLC +G + D G+
Sbjct: 452 LSQQMISS-GVC--PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVE 508
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV+T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 509 PDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 568
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ SK +V ++N LINGYCK V+D + L EM GI ADA Y TL
Sbjct: 569 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG--- 625
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
F +GN I+G A
Sbjct: 626 ---------------------------FRKVGN-------------ING---------AL 636
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
DIF ++ + G+ PD +T M+ GF + + ++A +L D++
Sbjct: 637 DIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
K R D+YS+NILI +C + A+S ++ G+ D T+ TL +
Sbjct: 108 KQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
P+ +TT ++GL + G ++EA+ + + T T ++D
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+CK G A ++ + + + P+VV Y+ +I CK+G+H A L +M+E G+
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ A+ FV +G F+PN+VTFN+LI G C GR+ + LF ++ + I
Sbjct: 562 LDEATQMFVSMGS---KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 618
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+ TL AL++F+EM++ GV PD +T N++ G
Sbjct: 619 YITLIYGFRKVGNINGALDIFQEMISS-GVY--PDTITIRNMLTGF 661
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 175/367 (47%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++L S TP+ V + SLI GLC +A LF +N C P+ +T+N +
Sbjct: 32 LFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASC 91
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
A +L ++M+ + V PDVVT ++DGLCK + + G P
Sbjct: 92 KRGMLEEACDLIKKMIEDGHV---PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP 148
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + L + K+++A + M +D+ P++ +Y L+DG A K
Sbjct: 149 NRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
G +YN++I+G C +++A+ L + M S+G R T+N L
Sbjct: 209 QRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268
Query: 210 ------FMAINNVPPDSHV-----YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
F + + D HV Y+T I GL V +A + + +C T+ T
Sbjct: 269 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 328
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI GLCK GR+K A ++ ++ + G +PDVVTYN ++HG C+ GQ ++A LL DM
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSS-GQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Query: 319 ETGLEPN 325
GL PN
Sbjct: 388 ARGLAPN 394
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 143/343 (41%), Gaps = 71/343 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + L R+L S TP+ VT+N +I G+C + EA LFK + C P+ TF
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
N L ID CK G M D G PD
Sbjct: 259 NIL-----------------------------IDAHCKRGKLDEAFRLLKRMTDDGHVPD 289
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VVT + + L ++++A LLE M++R P T NTL+ G
Sbjct: 290 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 349
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
A S G DV +YN L++G+C+ E A RE+LS+ M +
Sbjct: 350 AMVSSGQSPDVVTYNTLVHGHCRAGQTERA----RELLSD-------------MVARGLA 392
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ YT + GL K + EA VF+ + + C + T LI G C G++ +
Sbjct: 393 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 452
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
F M G++PD V Y + CK G+ +A +L + E+
Sbjct: 453 FGE-MVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 494
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 142/322 (44%), Gaps = 55/322 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ ++ LI GL G++ +A LF+KL P+ + + +L L N F++
Sbjct: 7 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
F M +G P VT NVM D K G +EEA L++
Sbjct: 67 LFA---------------------DMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKK 105
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRN 183
MI+ P+ TYNT+MDG S+ GC + S+N +I G C+
Sbjct: 106 MIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK 165
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++ A + EM ++ ++PPDS Y IDGL K G + EA K+F
Sbjct: 166 IDQACQVFHEMEAK-----------------DIPPDSWSYGILIDGLAKAGKLNEAYKLF 208
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + + T N +I G+C L A ++F M++ G P T+NI+I CK
Sbjct: 209 QRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS-MRSKGCRPSRFTFNILIDAHCK 267
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G+ +A LL M + G P+
Sbjct: 268 RGKLDEAFRLLKRMTDDGHVPD 289
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M ++ + PD + ++ D L+K GK+ +A L + ++ V P+T Y +L+ G +
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+GC +YN++I+ CK +E+A L ++M+ +G D TYNT
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120
Query: 209 ----------------LFMAINNV--PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
LF + + P+ + T I GL + + +A +VF +
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ LIDGL K G+L A+ +F ++ + G+TP VTYN++IHG C +A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRML-DSGITPSAVTYNVVIHGMCLAYTLDEA 239
Query: 311 NGLLLDMEETGLEPN 325
L M G P+
Sbjct: 240 LELFKSMRSKGCRPS 254
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 55/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
++L F N V++ +LI GLC G+ A + ++++ +V+ +NT+
Sbjct: 164 KVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDK 223
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVV 113
LV A + + EMV + IC P VVT +I GLC G + D + + P V
Sbjct: 224 LVNDAFDFYSEMVAK--RIC-PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVY 280
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T +++ D K+GK++EA + VM+++DV PN TYN+LM+G+ ++
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
G DV+SY+I+I+G+CK + V++A+ L EM + I D TYN+L
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRI 400
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M PP+ Y + +D L KN V +A+++ + + +H ++ T N L
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNIL 460
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
I+GLCK GRLK A +F ++ N G DV TYN MI GFCK+G
Sbjct: 461 INGLCKSGRLKDAQKVFEDVLVN-GYNIDVYTYNTMIKGFCKKG 503
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 153/349 (43%), Gaps = 71/349 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F + IL + P+ +T +LIKGLC +G I +A K+ N ++
Sbjct: 117 LGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVS 176
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL AL + + G + + DVV IIDG+CKD
Sbjct: 177 YRTLINGLCKVGQTKAALEMLRRID---GKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYS 233
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ + + P VVT N + L G++++A LL MI ++NP
Sbjct: 234 EMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPT--------------- 278
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
VY+++IL++ +CK+ V++A ++ M+ + ++ + TYN+L
Sbjct: 279 ------VYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLM----------- 321
Query: 222 VYTTYIDGLYKNGFVL-----EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
NG+ L +A +F+ + + + + +I G CKI + A
Sbjct: 322 -----------NGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMK 370
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M + PDVVTYN +I G CK G+ A L+ +M + G PN
Sbjct: 371 LFEE-MHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPN 418
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 122/268 (45%), Gaps = 49/268 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ LL ++++ P + TF+ L+ C EG++ EA +F + PN++T
Sbjct: 257 MGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVT 316
Query: 61 FNTLA-----LVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGFMMDQGMR----- 109
+N+L + +N E + N I PDV + + +I G CK M+D+ M+
Sbjct: 317 YNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIK-MVDEAMKLFEEM 375
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
PDVVT N + D L K G++ A L+ M R PN TYN+L+D
Sbjct: 376 HCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHV 435
Query: 158 ----AWWSKGCRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+K H++ +YNILING CK ++DA + ++L G D TYNT+
Sbjct: 436 DKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTM 495
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVL 237
I G K GFV+
Sbjct: 496 -----------------IKGFCKKGFVI 506
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L+G + PN++T+NSL+ LC + +A L KL P+V T+
Sbjct: 398 GRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTY 457
Query: 62 NTLA---------LVALNLFEE-MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ 106
N L A +FE+ +VN + + DV T +I G CK GF++ Q
Sbjct: 458 NILINGLCKSGRLKDAQKVFEDVLVNGYNI----DVYTYNTMIKGFCKKGFVIPQ 508
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 52/210 (24%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAI 213
+ + ++ K + VSL R+M GI ++ T + L F
Sbjct: 68 SIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVF 127
Query: 214 NNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+N+ PD+ TT I GL G + +A+ + L + LI+GLCK+
Sbjct: 128 SNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKV 187
Query: 269 GRLKIAWDI----------------------------------FHMLMQNPGLTPDVVTY 294
G+ K A ++ F+ M + P VVTY
Sbjct: 188 GQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTY 247
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
N +I G C GQ + A GLL M + P
Sbjct: 248 NTLICGLCIMGQLKDAIGLLHKMILENINP 277
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 177/368 (48%), Gaps = 64/368 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNVIT 60
GR LL R++ PN +T+ +++ G+C G + A L +K+ V PNV+
Sbjct: 191 GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVI 250
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++ + A NLF EM E G+ P++ T +I+G C G
Sbjct: 251 YSAIIDGLWKDGRQTDAQNLFSEM-QEKGI--SPNLFTYNCMINGFCSSGRWSEAQRLLR 307
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M ++ M PDVVT +V+ + L K+GK EA L M+ R + PNT TYN+++DGF+
Sbjct: 308 EMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQN 367
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KGC DV +++ILI+GYC + V+D + L EM G+ A+ TY
Sbjct: 368 RLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYT 427
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL I G + G + A+ + + + + TCN L+DGLC
Sbjct: 428 TL-----------------IHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470
Query: 268 IGRLKIAWDIFHMLMQNP----------GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G+LK A ++F ++ ++ + PDV TYNI+I G EG+ +A L +M
Sbjct: 471 NGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEM 530
Query: 318 EETGLEPN 325
GL P+
Sbjct: 531 PHRGLVPD 538
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 155/368 (42%), Gaps = 60/368 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL + +P++VTF+ LI L EG+ EA L+ ++ PN IT+
Sbjct: 297 GRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITY 356
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-----MMD 105
N++ N + F ++ C PDV+T + +IDG C DG M
Sbjct: 357 NSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSR 416
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ + +T + + G + A LL+ MI V PN T NTL+DG
Sbjct: 417 RGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKD 476
Query: 157 ----FAWWSKG------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
F K DV +YNILI G + +A L EM G+
Sbjct: 477 ALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLV 536
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
D TYN++ M PD +TT I+G K G V + ++V
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEV 596
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G V T LI G C++G + A DIF ++ + G+ PD +T M+ G
Sbjct: 597 FCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISS-GVYPDTITIRNMLTGLW 655
Query: 303 KEGQHQKA 310
+ + ++A
Sbjct: 656 SKEELKRA 663
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 150/374 (40%), Gaps = 96/374 (25%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N+ +F LIK C+ ++ A F K+ P+++TF+TL L + E ++ F
Sbjct: 110 NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFF 169
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
ICKP+V+ T +++GLC++ G++ EA LL+ M+
Sbjct: 170 HQICKPNVIAFTTLMNGLCRE-------------------------GRVVEAVALLDRMV 204
Query: 140 QRDVNPNTCTYNTLMDGF----------------------------------AWWS---- 161
+ + PN TY T++DG W
Sbjct: 205 EDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQ 264
Query: 162 ------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG ++++YN +ING+C +A L REM + D T++ L
Sbjct: 265 TDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVL 324
Query: 210 FMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A+ + P++ Y + IDG K + A ++F + C
Sbjct: 325 INALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGC 384
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T + LIDG C R+ + H M GL + +TY +IHGFC+ G A
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHE-MSRRGLVANTITYTTLIHGFCQLGNLNAAL 443
Query: 312 GLLLDMEETGLEPN 325
LL +M +G+ PN
Sbjct: 444 DLLQEMISSGVCPN 457
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 42/237 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + LL ++ S PN+VT N+L+ GLC G++ +A +FK V+
Sbjct: 436 LGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFK----------VMQ 485
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+ + L A + F ++ +PDV T +I GL +G M +G+ P
Sbjct: 486 KSKMDLDASHPFNDV--------EPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVP 537
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T N + D L K +++EA + + M + +P+ T+ TL++G+
Sbjct: 538 DTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVF 597
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G + +Y LI+G+C+ N+ A+ + +EM+S G+ D T + +
Sbjct: 598 CEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 654
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 187/406 (46%), Gaps = 90/406 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------- 42
G+ F + +IL + PN +T N+L+KGLC EG++ EA
Sbjct: 107 GQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISY 166
Query: 43 ----------------ARLFKKLNVFCCDPNVITF---------NTLALVALNLFEEMVN 77
RL +++ + PNV+ + +TL A +L+ EMV
Sbjct: 167 GILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMV- 225
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
G PDVVT + ++ G C G M+ + + PD+ T ++ D L K+GK
Sbjct: 226 --GKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
++EA +L VM++ VN + Y+TLMDG+ ++ G DV+ Y+I
Sbjct: 284 VKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSI 343
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
+ING CK + V++A++L E+ + + D TY +L M
Sbjct: 344 MINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRG 403
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PPD Y ID L KNG + A+ +F+ + + + T L+DGLCK+GRLK A
Sbjct: 404 QPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNAL 463
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ F L+ G +V TY +MI+G CKEG +A L ME+ G
Sbjct: 464 EFFQDLLTK-GYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNG 508
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/390 (25%), Positives = 163/390 (41%), Gaps = 86/390 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
TP+ FN ++ L R A L+K++ + +P+ T N + + F ++V F
Sbjct: 55 TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNII-INCFCHFGQVVLAF 113
Query: 80 GVICK-------PDVVTCTNIIDGLCKDGFMMD----------QG--------------- 107
+ K P+ +T ++ GLC +G + + QG
Sbjct: 114 SGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGV 173
Query: 108 --------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+RP+VV +++ D L KD ++EA L M+ + ++P+
Sbjct: 174 CKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDV 233
Query: 148 CTYNTLMDGFAWWSKGCRH--------------DVYSYNILINGYCKDRNVEDAVSLCRE 193
TY+ L+ GF + R D+Y+Y IL++ CK+ V++A ++
Sbjct: 234 VTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAV 293
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
M+ + D Y+TL M V PD H Y+ I+GL K
Sbjct: 294 MVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKR 353
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V EA+ +F I V T LID LCK GR+ WD+F ++ G PDV+TYN
Sbjct: 354 VDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR-GQPPDVITYN 412
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I CK G +A L M++ + PN
Sbjct: 413 NLIDALCKNGHLDRAIALFNKMKDQAIRPN 442
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 36/244 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV--- 58
G+ +L ++ +C ++V +++L+ G C + A R+F + P+V
Sbjct: 282 GKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCY 341
Query: 59 -ITFNTLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
I N L + ALNLFEE+ + V PD VT T++ID LCK G
Sbjct: 342 SIMINGLCKIKRVDEALNLFEEIHQKNMV---PDTVTYTSLIDCLCKSGRISYVWDLFDE 398
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+D+G PDV+T N + D L K+G ++ A L M + + PN T+ L+DG
Sbjct: 399 MLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGR 458
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG +V +Y ++ING CK+ +++A++L M G +DA T+
Sbjct: 459 LKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEI 518
Query: 209 LFMA 212
+ A
Sbjct: 519 MIRA 522
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 22/159 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + L +L P+++T+N+LI LC G + A LF K+ PNV TF
Sbjct: 387 GRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTF 446
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L AL F++++ + + +V T T +I+GLCK+G
Sbjct: 447 TILLDGLCKVGRLKNALEFFQDLLTKGYCL---NVRTYTVMINGLCKEGLLDEALALQSR 503
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
M D G D VT +M + ++A L+ MI R
Sbjct: 504 MEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIAR 542
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 55/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +++ F + V++ +LI GLC G ARL +KL P+V+ +
Sbjct: 141 GEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMY 200
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQG 107
NT+ L+ A +++ EM+ + G+ PDVVT T +I G C K+ F +
Sbjct: 201 NTIINSLCKNKLLGDACDVYSEMIVK-GI--SPDVVTYTTLIHGFCIMGHLKEAFSLLNE 257
Query: 108 MR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ P+V T N++ D LSK+GKM+EA LL VM++ + P+ TYN+L+DG
Sbjct: 258 MKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDE 317
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++ +G DV Y +ING CK + V++A+SL EM + + D TYN+
Sbjct: 318 VKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNS 377
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD + YT +DGL K+G + +A ++F +
Sbjct: 378 LIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKG 437
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + LI+ LCK G A D+ M++ G PD VT++I+I ++ ++ KA
Sbjct: 438 YHLNVHAYTVLINRLCKAGFFDEALDL-KSKMEDKGCMPDAVTFDIIIRALFEKDENDKA 496
Query: 311 NGLLLDMEETGL 322
+L +M GL
Sbjct: 497 EKILREMIARGL 508
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 147/343 (42%), Gaps = 71/343 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + IL F PN +T N+LIKGLC G I +A +L
Sbjct: 111 AFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQL----------------- 153
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
+ F + D V+ +I+GLCK G + ++PDVV N
Sbjct: 154 --------VAQGFQL----DQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYN 201
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------K 162
+ ++L K+ + +A + MI + ++P+ TY TL+ GF K
Sbjct: 202 TIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLK 261
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+V ++NILI+ K+ +++A L M+ I+ D TYN+L
Sbjct: 262 NINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSL------------- 308
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDG + V A VF ++ ++ +I+GLCK + A +F M
Sbjct: 309 ----IDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEE-M 363
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + PD+VTYN +I G CK ++A L M+E G++P+
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPD 406
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 39/219 (17%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+ PD+ TL+++ + + A + +++R +PN T NTL
Sbjct: 87 GITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTL------------- 133
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
I G C ++ A+ +++++G + D +Y TL
Sbjct: 134 --------IKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTL----------------- 168
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+GL K G ++ + H + N +I+ LCK L A D++ ++ G
Sbjct: 169 INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVK-G 227
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++PDVVTY +IHGFC G ++A LL +M+ + PN
Sbjct: 228 ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPN 266
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 184/375 (49%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +++ F N V++ +LI GLC G+ A +L ++++ PNV+ +
Sbjct: 156 GQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY 215
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NT+ LV A +L+ EMV++ G+ PDVVT +I G C G M D
Sbjct: 216 NTIIDSMCKVKLVNEAFDLYSEMVSK-GI--SPDVVTYNALISGFCIVGKMKDATDLFNK 272
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ + P+V T N++ D K+ +++EA +L +M+++ + P+ TYN+LMD +
Sbjct: 273 MIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G +++SY+I+I+G+CK + V++A++L +EM I D TYN+
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNS 392
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VP D Y + +D L KN V +A+ + + + +
Sbjct: 393 LIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 452
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T L+DGLCK GRL+ A +F L+ G DV Y MI GFC G ++
Sbjct: 453 IQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVK-GYILDVNIYTAMIQGFCSHGLFDES 511
Query: 311 NGLLLDMEETGLEPN 325
LL MEE G PN
Sbjct: 512 LDLLSKMEENGCIPN 526
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 177/362 (48%), Gaps = 62/362 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F +L +IL + PN++T +LIKGLC +G+I +A + K+ N ++
Sbjct: 120 LGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVS 179
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF---- 102
+ TL AL L + G + +P+VV IID +CK + F
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVD---GKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 236
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ PDVVT N + GKM++A L MI ++NPN
Sbjct: 237 EMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPN--------------- 281
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
VY++NIL++G+CK+R +++A ++ M+ +GI+ D TYN+L
Sbjct: 282 ------VYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNK 335
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
++ V P+ H Y+ I G K V EAM +F + + + + T N LID
Sbjct: 336 AKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLID 395
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK+G++ A + M + G+ D +TYN ++ CK Q KA LL M++ G++
Sbjct: 396 GLCKLGKISYALKLVDE-MHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQ 454
Query: 324 PN 325
P+
Sbjct: 455 PD 456
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ D+V L+++ + S+ G+ + +L +++ PN T TL+ G +
Sbjct: 102 GITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQA 161
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G + SY LING CK A+ L R R D
Sbjct: 162 LQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLR-------RVDGKL------- 207
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
V P+ +Y T ID + K V EA ++S + + + T N LI G C +G++K
Sbjct: 208 ---VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMK 264
Query: 273 IAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+F+ M+ +N + P+V T+NI++ GFCKE + ++A +L M + G++P+
Sbjct: 265 DATDLFNKMIFEN--INPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPD 316
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 38/213 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ +++ +I G C ++ EA LFK+++ P+V+T+N+L AL L
Sbjct: 350 PNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM ++ GV D +T +I+D LCK+ M D+G++PD+ T + D
Sbjct: 410 VDEM-HDRGV--PHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDG 466
Query: 122 LSKDGKMEEANCLLEVMIQR----DVNPNT------CTYNTLMDGFAWWSK----GCRHD 167
L K+G++E+A + E ++ + DVN T C++ + SK GC +
Sbjct: 467 LCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPN 526
Query: 168 VYSYNILI-NGYCKDRNVEDAVSLCREMLSEGI 199
+Y I+I + + KD N + A L REM++ G+
Sbjct: 527 AVTYEIIICSLFDKDEN-DKAEKLLREMITRGL 558
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 82/222 (36%), Gaps = 58/222 (26%)
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINN 215
K + ++ + ++ K + VSL R+M GI +D + L F +
Sbjct: 63 LHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQ 122
Query: 216 VP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIET 257
P P+ TT I GL G + +A++ A+G H L +
Sbjct: 123 NPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFH---LNKVS 179
Query: 258 CNCLIDGLCKIGRLKIAWDIFHML----------------------------------MQ 283
LI+GLCK+G+ A + + M
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 239
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++PDVVTYN +I GFC G+ + A L M + PN
Sbjct: 240 SKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPN 281
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 177/373 (47%), Gaps = 71/373 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF +L+ GLC EGR++EA L ++ PN IT+ T+ + ALNL
Sbjct: 177 PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNL 236
Query: 72 FEEMVNEFGVICKPDVVTC-----TNIIDGLCKDG-----------FMMDQGMRPDVVTL 115
+M E I KP+VV T +I+G C G + + + PDVVT
Sbjct: 237 LRKM-EEVSHI-KPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTY 294
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWS 161
N + + K+GK EA L + M+ R + P+T TY++++DGF +
Sbjct: 295 NALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMAT 354
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
KGC D+ ++N LI GYC+ + V+D + L EM G+ A+ TY TL
Sbjct: 355 KGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNA 414
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL---------- 253
M + V P+ T +DGL NG + +A+++F A+ K +
Sbjct: 415 AQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVE 474
Query: 254 -TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
++T N LI GL G+ A +++ M + G+ PD +TYN +IHG CK+ + +A
Sbjct: 475 PDVQTYNILISGLINEGKFLEAEELYEE-MPHRGIVPDTITYNSVIHGLCKQSRLDEATQ 533
Query: 313 LLLDMEETGLEPN 325
+ M PN
Sbjct: 534 MFDSMGSKSFSPN 546
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 163/377 (43%), Gaps = 61/377 (16%)
Query: 2 GRASGGFVLLGRIL-MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
GR S LL +L +P++VT+N+LI EG+ EA L+ ++ P+ IT
Sbjct: 269 GRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTIT 328
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MM 104
++++ N + + F ++ C PD++T +I G C+ DG M
Sbjct: 329 YSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 388
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
+ G+ + +T + + G + A LL+ M+ V PN T NTL+DG
Sbjct: 389 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLK 448
Query: 157 -----FAWWSK------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
F K G DV +YNILI+G + +A L EM GI
Sbjct: 449 DALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 508
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
D TYN++ M + P+ +TT I+G K G V + ++
Sbjct: 509 VPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 568
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F +G V T LI G K+G + A DIF +M + G+ PD +T M+ G
Sbjct: 569 LFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMAS-GVYPDTITIRNMLTGL 627
Query: 302 CKEGQHQKANGLLLDME 318
+ + ++A +L D++
Sbjct: 628 WSKEELKRAVAMLEDLQ 644
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 151/370 (40%), Gaps = 75/370 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR L ++ M N +F L+K C+ ++ A F K+ P V+T
Sbjct: 91 MGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVT 150
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
F+TL L + E ++ F +CKP+VVT T +++GLC
Sbjct: 151 FSTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLC-------------------- 190
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL---- 174
++G++ EA LL+ M++ + PN TY T++DG V + N+L
Sbjct: 191 -----REGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGD----TVSALNLLRKME 241
Query: 175 --------------------INGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAI 213
ING+C +A L +EML + I D TYN L A
Sbjct: 242 EVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAF 301
Query: 214 ------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+ P + Y++ IDG K + A +F + C I
Sbjct: 302 VKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDI 361
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N LI G C+ R+ + H M GL + +TY +IHGFC+ G A LL
Sbjct: 362 ITFNTLIAGYCRAKRVDDGIKLLHE-MTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQ 420
Query: 316 DMEETGLEPN 325
+M +G+ PN
Sbjct: 421 EMVSSGVCPN 430
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 177/398 (44%), Gaps = 97/398 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+VT+NSLI GLC A LF+ + C P+++T+NTL A+ L
Sbjct: 112 PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 171
Query: 72 FEEMVNE---------------FGVI------------------------CKPDVVTCTN 92
F+EM++ + V+ C PDV+T T
Sbjct: 172 FQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTI 231
Query: 93 IIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
++DGLCK+ M+D G P++VT N + L + ++ +A L+ M R
Sbjct: 232 LVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG 291
Query: 143 VNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
PN TY TL+DG KG D+ YN+LING CK V++++
Sbjct: 292 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI 351
Query: 189 SLCREMLSEGIRADATTYNT------------------LFMAINNVPPDSHVYTTYIDGL 230
+L R +S GI+ D TY++ L++ PPD +Y+T IDGL
Sbjct: 352 ALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 411
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML---MQNPGL 287
K G V EA ++ + C + T + LIDGLCK GR+ D H+L M G
Sbjct: 412 CKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV----DEAHLLLARMVRMGT 467
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P +TYN +I G C +A L+ +ME + P+
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPS 505
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 169/378 (44%), Gaps = 58/378 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S LL + +P+++T+ L+ GLC E ++ A + +++ C PN++T+N
Sbjct: 206 RVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYN 265
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+L AL L +M C P+VVT +IDGLCK G M
Sbjct: 266 SLLHGLCRARRVSDALALMRDMTCRG---CTPNVVTYGTLIDGLCKVGRVKDACAMLADM 322
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+D+G PD++ N++ + L K +++E+ LL + + P+ TY++++ G
Sbjct: 323 IDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRL 382
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S+GC DV Y+ LI+G CK V++A L M +G AD TY+TL
Sbjct: 383 DEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTL 442
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M PP + Y + I GL + EA+++ + C
Sbjct: 443 IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNC 502
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHML----MQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T N LI G+C++ R+ A + + G D + Y+ +I G CK G+
Sbjct: 503 APSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRV 562
Query: 308 QKANGLLLDMEETGLEPN 325
+A +M + G+ P+
Sbjct: 563 AEALDYFQEMIDNGVIPD 580
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 168/372 (45%), Gaps = 62/372 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ + + +L +L + PN+VT+NSL+ GLC R+ +A L + + C PNV+T+
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
TL A + +M+++ G PD++ +I+GLCK +
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMIDKGGT---PDLMIYNMLINGLCKADQVDESIALLRR 356
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ G++PDVVT + + L + +++EA LL + R P+ Y+TL+DG K
Sbjct: 357 AVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGK 416
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC DV +Y+ LI+G CK V++A L M+ G TYN+
Sbjct: 417 VDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNS 476
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M +N P + Y I G+ + V A+ V +
Sbjct: 477 LIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAV-VLLEQAKAR 535
Query: 251 CVLTIETC------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
CV T + LIDGLCK GR+ A D F ++ N G+ PD +TY+I++ G K
Sbjct: 536 CVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDN-GVIPDHITYSILLEGLKKS 594
Query: 305 GQHQKANGLLLD 316
+ L+LD
Sbjct: 595 KDLHELRHLVLD 606
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 151/345 (43%), Gaps = 61/345 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+ +L++G C G I +A R F ++ PNV + L ++ AL
Sbjct: 7 PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M G++ D V T ++ GL K+ M D G P+VVT N + D
Sbjct: 67 FRAMQGS-GIV--ADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------------- 162
L K+ + + A L E M + +P+ TYNTL+DG K
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
C +V +Y++LI+G CK V AV L M + G PD
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARG-----------------CSPDV 226
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT +DGL K V A +V + + CV + T N L+ GLC+ R+ A +
Sbjct: 227 ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRD 286
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G TP+VVTY +I G CK G+ + A +L DM + G P+
Sbjct: 287 -MTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 126/295 (42%), Gaps = 54/295 (18%)
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEE 130
IC+PDV T ++ G C+ G +DQ R P+V +++ D L K + +
Sbjct: 4 ICQPDVYTYAALLRGFCRGG-EIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNILI 175
A M + +T Y L+ G W K GC +V +YN LI
Sbjct: 63 ALRCFRAMQGSGIVADTVIYTALLSGL-WKEKRLDQALAILHEMRDHGCEPNVVTYNSLI 121
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAI---------- 213
+G CK+ + A L M S TYNTL MA+
Sbjct: 122 DGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSH 181
Query: 214 ---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ P+ Y+ IDGL K V +A+++ ++ C + T L+DGLCK +
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 241
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ AW++ ++ + G P++VTYN ++HG C+ + A L+ DM G PN
Sbjct: 242 VAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 295
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +LL R++ P+ +T+NSLIKGLC + EA L +++ C P+ +T+
Sbjct: 450 GRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTY 509
Query: 62 NTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------- 102
N L A+V L + G D + +++IDGLCK G
Sbjct: 510 NILIHGMCRMERVDSAVVLLEQAKARCVAAGGT-ALDTIAYSSLIDGLCKAGRVAEALDY 568
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL-LEVMIQ 140
M+D G+ PD +T +++ + L K + E L L+ M+Q
Sbjct: 569 FQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 610
>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
Length = 768
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 175/357 (49%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL------ 71
+P+ FN + + I EA +F K+ P V+ + L AL L
Sbjct: 339 SPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVL 398
Query: 72 -FEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTD 120
F +M+NE GV PD+ ++++ GLC D + ++DQG+R + N++
Sbjct: 399 KFNQMINE-GVT--PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMC 455
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL ++G++ EA L+++M++ DV P+ +YNTL+DG S G +
Sbjct: 456 NLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKP 515
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
D ++YN L++GYCK R ++DA SL REML +G+ TYNT+ +
Sbjct: 516 DEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELY 575
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
N D + YT ++GL +N FV EA K+F ++ + L I T N +I L K
Sbjct: 576 LNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKG 635
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + A D+F + GL PDV TY ++ KEG ++ + L MEE G PN
Sbjct: 636 GRKEDAMDLFATI-SAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPN 691
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 161/360 (44%), Gaps = 53/360 (14%)
Query: 1 MGRASGGFVLLGRILMSCFT-PNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNV 58
MGR GF G IL + ++ N V F L+KGLC R+ EA L +++ F C NV
Sbjct: 105 MGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNV 164
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------- 102
I++N L A AL L M ++ P+VVT T +IDGLCK
Sbjct: 165 ISYNILLKGLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGV 224
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M+D+G+RP+ T + GK +E +L+ M + P+ Y L+D
Sbjct: 225 FQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCK 284
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ KG + V Y IL++GY +EG ++ +
Sbjct: 285 NGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYA----------------TEGALSEMHS 328
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ L M N V PD H++ + K + EAM +F + + LID L
Sbjct: 329 FLDL-MVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDAL 387
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK+GR+ A F+ ++ N G+TPD+ ++ +++G C + +KA L ++ + G+ N
Sbjct: 388 CKLGRVDDAVLKFNQMI-NEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLN 446
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 130/318 (40%), Gaps = 58/318 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ +L P+++++N+L+ G C GRI EAA+L + P+ T+
Sbjct: 461 GRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTY 520
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL CK I D M+ +G+ P VVT N +
Sbjct: 521 NTL--------------LHGYCK-----ARRIDDAYSLFREMLMKGLTPGVVTYNTILHG 561
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + G+ EA L MI N C D+Y+Y I++NG C++
Sbjct: 562 LFQIGRFCEAKELYLNMIN---NRRKC------------------DIYTYTIILNGLCRN 600
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
V++A + + + S+ ++ D T N + I L K G +AM
Sbjct: 601 NFVDEAFKMFQSLCSKDLQLDIFTINIM-----------------IGALLKGGRKEDAMD 643
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F+ I + V +ET + + L K G L+ ++F + +N G P+ N ++
Sbjct: 644 LFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEEN-GTAPNSRMLNALVRWL 702
Query: 302 CKEGQHQKANGLLLDMEE 319
G +A L ++E
Sbjct: 703 LHRGDIGRAGVYLSKLDE 720
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 33/167 (19%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAIN------------------------NVPPD 219
++DA+ L EML+ A T+N L ++ V P
Sbjct: 32 LDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPS 91
Query: 220 SHVYTTYID-----GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
S YT I G K+GF + + + + V+ + L+ GLC R+ A
Sbjct: 92 SCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQ----LLKGLCDAKRVDEA 147
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI M G T +V++YNI++ G C E + ++A L+ M + G
Sbjct: 148 TDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDG 194
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 170/377 (45%), Gaps = 53/377 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MGR GF G IL S + N + N L+KGLC R+ EA L K++ C P+V+
Sbjct: 107 MGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVV 166
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
++NTL A AL L M + G C P+VV+ +I+G +G
Sbjct: 167 SYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLF 226
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
MMD+G++P+VVT + D L K ++ A + + MI + V P+ TYN L+ G+
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 158 AWW-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W + G + D Y+Y L+N C + +A M+ +GI+ + Y
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIY 346
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L M N + PD H++ K + EAM +F+ +
Sbjct: 347 GILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQ 406
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ LID LCK+GR+ A F+ +M N G+ P++ +N +++G C + +
Sbjct: 407 QGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMM-NEGVAPNIFVFNSLVYGLCTVDKWE 465
Query: 309 KANGLLLDMEETGLEPN 325
KA +M G+ P+
Sbjct: 466 KAKEFYFEMLNQGIRPD 482
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 169/364 (46%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + +P+ FN + + I EA +F K+ P+V+ F L AL
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALC 424
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVV 113
L ++ V +F + P++ +++ GLC K+ + M++QG+RPDVV
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N + NL G++ +A L+++M + P+ +Y TL+ G
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVM 544
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
S G + D ++YN L++GYC+ ++DA + REML GI TY+T+ +
Sbjct: 545 LSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRF 604
Query: 220 SH------------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
S +Y ++GL KN V EA K+F ++ + L I T N +
Sbjct: 605 SEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIM 664
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I L K GR + A +F + + GL PDV TY ++ +EG ++ + L ME++G
Sbjct: 665 IGALFKSGRNEDAMHLFATI-SSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 322 LEPN 325
PN
Sbjct: 724 TTPN 727
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 63/347 (18%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTL----------------ALVALNLFEEMVNEFGVICK 84
+A +LF L ++I FN L + + ++LF M+ E +
Sbjct: 32 DALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVT 91
Query: 85 PDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NC 133
PD+ T + +I C+ G ++ G R + + +N + L ++ EA +
Sbjct: 92 PDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDI 151
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFA-----------------WWSKGCRHDVYSYNILIN 176
L++ M + P+ +YNTL+ GF + C +V SY +IN
Sbjct: 152 LIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVIN 211
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+ + V+ A +L EM+ GI+ + TY T+ M V P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ Y I G G E +++ + H T L++ LC GR + A F
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFF 331
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G+ P+V Y I+IHG+ +G + + LL M E GL P+
Sbjct: 332 DSMIRK-GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 151/364 (41%), Gaps = 55/364 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + +++ PN+ FNSL+ GLCT + +A + ++ P+V+
Sbjct: 426 LGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVF 485
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FNT+ + A L + M V +PDV++ T +I G C G
Sbjct: 486 FNTILCNLCTKGQVMKAQRLIDLMER---VGTRPDVISYTTLIGGHCLVGRIDEAAKSLD 542
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G++PD T N + + G++++A + M++ + P TY+T++ G
Sbjct: 543 VMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTR 602
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + +++ YNI++NG K+ V++A L + + S+ + + TT+N
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662
Query: 208 T----------------LFMAINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
LF I++ + PD Y + L + G++ E +FSA+
Sbjct: 663 IMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS 722
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
N L+ L G + A L + + T ++I ++ H
Sbjct: 723 GTTPNSRMLNALVRRLLHRGDITRAGAYLSKL-DEKNFSLEASTTAMLISLLSRDEYHHH 781
Query: 310 ANGL 313
A L
Sbjct: 782 ATSL 785
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/359 (32%), Positives = 179/359 (49%), Gaps = 57/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--AL 69
F + +++ +LI GLC G A +L + L P+V+ +N + LV A
Sbjct: 170 FQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEAC 229
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
NL+ EM N + P+VVT T +I G C G +++ + + PDV T +++
Sbjct: 230 NLYSEM-NAKQIY--PNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILI 286
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
D L K+GKM+ A +L VM++ V P+ TYN+L+DG+ + G
Sbjct: 287 DALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVT 346
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
V SY I+I+G CK + V++A+SL EM + + + T+N+L
Sbjct: 347 PGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDL 406
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + D Y++ ID L KN + +A+ +F + + + T LIDGLCK
Sbjct: 407 VDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCK 466
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRLKIA ++F H+L++ G D+ TY +MI GFCK G +A LL ME+ G PN
Sbjct: 467 GGRLKIAQEVFQHLLIK--GYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPN 523
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 162/367 (44%), Gaps = 72/367 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F +L IL + P+++T +LIKGLC G + +A + +
Sbjct: 117 LGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDV----------- 165
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
VAL EF + D ++ +I+GLCK G + ++ ++P
Sbjct: 166 ------VAL--------EFQL----DRISYGTLINGLCKIGETKAAIQLMRNLEERSIKP 207
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
DVV N++ D+L K+ + EA L M + + PN TY TL+ GF
Sbjct: 208 DVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALL 267
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
K DVY+++ILI+ K+ ++ A + M+ ++ D TYN+L
Sbjct: 268 NEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLV 327
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
MA + V P YT IDGL K V EA+ +F + + + T
Sbjct: 328 NEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITF 387
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDGLCK GR+ WD+ M++ DV+TY+ +I CK +A L M
Sbjct: 388 NSLIDGLCKSGRIAYVWDLVDK-MRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI 446
Query: 319 ETGLEPN 325
++P+
Sbjct: 447 TQEIQPD 453
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 117/287 (40%), Gaps = 68/287 (23%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+G+ D+VTLN++ + G++ + +L +++R +P+ T TL+ G
Sbjct: 98 KGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKK 157
Query: 161 --------------------------------------------SKGCRHDVYSYNILIN 176
+ + DV YNI+I+
Sbjct: 158 ALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIID 217
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
CK++ V +A +L EM ++ I + TY TL M + N+ P
Sbjct: 218 SLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINP 277
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + ++ ID L K G + A V + + + T N L+DG + +K A +F
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVF 337
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + Q+ G+TP V +Y IMI G CK +A L +M+ + PN
Sbjct: 338 NSMAQS-GVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPN 383
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 173/340 (50%), Gaps = 54/340 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P+++T+N++I G C G++ +A L K++ PN ITFN L A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+FEEM + +P+VVT ++I+GLC +G M G++P+VVT N +
Sbjct: 320 KVFEEMQRQG---LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALI 376
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ K ++EA +L+ + +R + PN T+NTL+D + + G
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+V +YN LI G+C++ NV++A L +EM G++AD TYN L
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL---------------- 480
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+D L K G +A+++ + + T N LIDG + G A ++ LM+
Sbjct: 481 -VDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNV-RTLMEKK 538
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++VTYN++I GFC +G+ ++AN LL +M E GL PN
Sbjct: 539 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 578
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 50/323 (15%)
Query: 48 KLNVFCCDPNVITFNTLALVAL--NLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF-- 102
+L+ C+P +++ + + ++++EM+ GV +VVT +I+GLCK G
Sbjct: 191 RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV----NVVTFDVVINGLCKVGKFQ 246
Query: 103 --------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
M G P V+T N + D K GKM +A+ LL+ M+ + ++PN T+N L+
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
Query: 155 DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
DGF +G + +V +YN LING C + +++A+ L +M G++
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ TYN L + + P+ + T ID K G + +A +
Sbjct: 367 PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLL 426
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
S + + + T NCLI G C+ G +K A + M+ GL D+VTYNI++ C
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE-MEGNGLKADLVTYNILVDALC 485
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K+G+ +KA LL +M E GL P+
Sbjct: 486 KKGETRKAVRLLDEMFEVGLNPS 508
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 38/247 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALN 70
PN+VT+N+LI G C + + EA + + PNVITFNTL +
Sbjct: 365 LKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAF 424
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L M+ + GV P+V T +I G C++G M G++ D+VT N++ D
Sbjct: 425 LLRSMMLDTGVC--PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVD 482
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K G+ +A LL+ M + +NP+ TYN L+DG+ KG R
Sbjct: 483 ALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRA 542
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPP-DSHV 222
++ +YN+LI G+C +E+A L EML +G+ + TTY+ L M +P D H+
Sbjct: 543 NIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHL 602
Query: 223 YTTYIDG 229
Y I
Sbjct: 603 YNVSISS 609
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 38/238 (15%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
D G R ++ N M +L K+G++ + + MI+R + N T++ +++G
Sbjct: 187 DYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQ 246
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
AW G V +YN +I+GYCK + A +L +EM+++ I + T+N
Sbjct: 247 KAGDVVEDMKAW---GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFN 303
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L IDG ++ V A KVF + + T N LI+GLC
Sbjct: 304 IL-----------------IDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A + M GL P+VVTYN +I+GFCK+ ++A +L D+ + GL PN
Sbjct: 347 NGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F+L +L + PN+ T+N LI G C EG + EA +L K++ +++T+
Sbjct: 418 GRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTY 477
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ L +EM F V P +T +IDG ++G
Sbjct: 478 NILVDALCKKGETRKAVRLLDEM---FEVGLNPSHLTYNALIDGYFREGNSTAALNVRTL 534
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G R ++VT NV+ GK+EEAN LL M+++ + PN TY+ L D K
Sbjct: 535 MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD--EMMEK 592
Query: 163 GCRHDV--YSYNILING 177
G D+ + YN+ I+
Sbjct: 593 GFIPDIDGHLYNVSISS 609
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 157 FAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
F W K G H+V + L++ +N +L +++T +++L + +
Sbjct: 94 FKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGS 153
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+S + + KNG + A++ F G++ L+ +CN ++ L K GR+ +
Sbjct: 154 WGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVV 213
Query: 275 WDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ M+ + G+ +VVT++++I+G CK G+ QKA ++ DM+ G P+
Sbjct: 214 ESVYKEMIRRRIGV--NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 171/374 (45%), Gaps = 50/374 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +L +L F P++ T+NSLI GLC G + EA + ++ + PN +T
Sbjct: 329 IGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVT 388
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMM 104
+NTL L N EE V+ PDV T ++I GLC M
Sbjct: 389 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMK 448
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+G PD T N++ D+L G++EEA LL+ M + N TYNTL+DGF
Sbjct: 449 TKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIE 508
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G +V +YN LI+G CK+R VE+A L +ML EG++ D TYN+L
Sbjct: 509 EAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLL 568
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N PDS Y T I GL K G V A ++ + V
Sbjct: 569 TYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMV 628
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKAN 311
L +T N +I L + R A +F +M+ G PD VTY ++ G C G +A
Sbjct: 629 LAPQTYNPVIKALFREKRTSEAVRLFREMMEK-GDPPDAVTYKVVFRGLCSGGGPIGEAV 687
Query: 312 GLLLDMEETGLEPN 325
L++M + G P+
Sbjct: 688 DFLVEMTDKGFLPD 701
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 159/336 (47%), Gaps = 56/336 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
VT N L+ G C EGRI E +++ P+ TFN+L AL + +
Sbjct: 282 VTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDV 341
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
M+ E PD+ T ++I GLCK G M+ + P+ VT N + L K
Sbjct: 342 MLQEG---FDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCK 398
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+ ++EEA L V+ + + P+ CT+N+L+ G +KGC D ++
Sbjct: 399 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFT 458
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN+LI+ C +E+A+SL +EM S G + TYNTL IDG
Sbjct: 459 YNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL-----------------IDGF 501
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTP 289
KN + EA ++F + + T N LIDGLCK R++ A + MLM+ GL P
Sbjct: 502 CKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME--GLKP 559
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D TYN ++ FC+ G +KA ++ M G EP+
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPD 595
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 167/365 (45%), Gaps = 55/365 (15%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL----- 66
R++ P++ TFN LIK LC +I A + +++ + P+ TF TL
Sbjct: 200 SRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEE 259
Query: 67 ----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
AL + E+MV C VT ++ G CK+G M ++G RPD
Sbjct: 260 GNMNGALRIREQMV---AAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDR 316
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------- 161
T N + + L + G ++ A +L+VM+Q +P+ TYN+L+ G
Sbjct: 317 FTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQ 376
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
+ + +YN LI+ CK+ VE+A L R + S+GI D T+N+L
Sbjct: 377 MILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNN 436
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M PD Y ID L G + EA+ + + + C + T N
Sbjct: 437 HRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNT 496
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDG CK R++ A +IF M+ G++ +VVTYN +I G CK + ++A L+ M
Sbjct: 497 LIDGFCKNKRIEEAEEIFDE-MELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLME 555
Query: 321 GLEPN 325
GL+P+
Sbjct: 556 GLKPD 560
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 158/341 (46%), Gaps = 55/341 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F P+ V + +++ L +G R+ +++ C+ TF L + LF+E V
Sbjct: 101 FVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAV 160
Query: 77 -------NEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMT 119
EFG+ K D T +++ L + M+ +G++PDV T N++
Sbjct: 161 AVVDIMEEEFGL--KLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILI 218
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L + ++ A ++E M ++P+ T+ TLM GF + GC
Sbjct: 219 KALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCP 278
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ N+L++GYCK+ +E+ +S EM +EG R D T+N+L
Sbjct: 279 SSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSL---------------- 322
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQN 284
++GL + G V A+++ + I T N LI GLCK+G ++ A +I M++++
Sbjct: 323 -VNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRD 381
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P+ VTYN +I CKE Q ++A L + G+ P+
Sbjct: 382 --FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPD 420
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 178/354 (50%), Gaps = 49/354 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ FN + + I EA +F K+ PN++T+ L AL L ++ V
Sbjct: 339 SPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVL 398
Query: 78 EFGVICK----PDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDNLS 123
+F + PD+ ++++ GLC ++ F ++DQG+R D V N + NL
Sbjct: 399 KFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLC 458
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
++G++ EA L+++M++ V P+ +YNTL+DG + G + D
Sbjct: 459 REGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKV 518
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFMAI 213
+YN L++GYCK R ++DA SL REML +G+ D TYNT L++++
Sbjct: 519 TYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSM 578
Query: 214 NNVPPDSHVYT--TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N ++YT I+GL KN FV EA K+F ++ + L I T N +I L K GR
Sbjct: 579 INSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRK 638
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D+F + GL PDV TY ++ KEG ++ + L MEE G PN
Sbjct: 639 EDAMDLFATI-SAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPN 691
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 160/366 (43%), Gaps = 69/366 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPN-MVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNV 58
MGR GF G IL + + N V F+ L+KGLC R+ EA L +++ F C P+V
Sbjct: 105 MGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDV 164
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR 109
+++ L A AL L M ++ P+VVT T +IDGLC
Sbjct: 165 FSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLC----------- 213
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK---- 162
K ++ A + + MI + V PN TY L+ G+ W +
Sbjct: 214 --------------KAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQM 259
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
G + D Y Y +L++ CK+ +A ++ ++ +GI+ + T Y L
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYAT 319
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M N V PD H++ K + EAM +F + + I T
Sbjct: 320 EGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT 379
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LID LCK+GR+ A F+ ++ + G+TPD+ ++ +++G C + +KA L ++
Sbjct: 380 YGALIDALCKLGRVDDAVLKFNQMI-DEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEV 438
Query: 318 EETGLE 323
+ G+
Sbjct: 439 LDQGIR 444
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 154/364 (42%), Gaps = 55/364 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + +++ TP++ F+SL+ GLCT + +A LF ++ + +
Sbjct: 390 LGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVF 449
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FNTL + A L + M+ V +PDV++ ++DG C G
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLR---VGVRPDVISYNTLVDGHCLTGRIDEAAKLLD 506
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
++ G++PD VT N + K ++++A L M+ + + P+ TYNT++ G
Sbjct: 507 VIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTG 566
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ + + ++Y+YNI+ING CK+ V++A + + S+ ++ D T N
Sbjct: 567 RFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTAN 626
Query: 208 T----------------LFMAIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
LF I+ + PD Y + L K G + E ++FSA+ +
Sbjct: 627 IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEEN 686
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
N L+ L G + A L + + T +++I + + Q
Sbjct: 687 GTAPNSRMLNALVRWLLHRGDINRAGAYLSKL-DEKNFSLEASTTSMLISIYSRGEYQQL 745
Query: 310 ANGL 313
A L
Sbjct: 746 AKSL 749
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 65/329 (19%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTL------------ALVALNLFEEMVNEFGVICKPDVV 88
+A +LF ++ +V FN L + + ++LF M+ E + P
Sbjct: 34 DALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSF 93
Query: 89 TCTNIIDGLC-----KDGF-----MMDQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEV 137
T T +I C K GF ++ G R D V + + L +++EA ++
Sbjct: 94 TYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEAT---DI 150
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+++R M F GC DV+SY+IL+ G+C ++ E+A+ L M +
Sbjct: 151 LLRR------------MPEF-----GCTPDVFSYSILLKGFCNEKRAEEALELLSMMADD 193
Query: 198 GIRA---DATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G + + TY T+ M V P++H YT I G G
Sbjct: 194 GDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKW 253
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
E +++ + H L+D LCK GR A +IF +++ G+ P+V Y I
Sbjct: 254 KEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRK-GIKPNVTIYGI 312
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HG+ EG + + L M G+ P+
Sbjct: 313 LLHGYATEGSLSEMHSFLDLMVGNGVSPD 341
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 53/377 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MGR GF G IL S + N + N L+KGLC R+ EA L K++ C P+V+
Sbjct: 107 MGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVV 166
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
++NTL A AL L M + G C P+VV+ +I+G +G
Sbjct: 167 SYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLF 226
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
MMD+G++P+VVT + D L K ++ A + + MI + V P+ TYN L+ G+
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 158 AWW-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W + G + D Y+Y L+N C + +A L M+ +GI+ + Y
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY 346
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L M N + PD H++ K + EAM +F+ +
Sbjct: 347 GILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQ 406
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ LID LCK+GR+ A F+ +M N G+ P++ +N +++G C + +
Sbjct: 407 QGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM-NEGVAPNIFVFNSLVYGLCTVDKWE 465
Query: 309 KANGLLLDMEETGLEPN 325
KA +M G+ P+
Sbjct: 466 KAKEFYFEMLNQGIRPD 482
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 168/364 (46%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + +P+ FN + + I EA +F K+ P+V+ + L AL
Sbjct: 365 LLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALC 424
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVV 113
L ++ V +F + P++ +++ GLC K+ + M++QG+RPDVV
Sbjct: 425 KLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVV 484
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N + NL G++ +A L+++M + P +Y TL+ G
Sbjct: 485 FFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVM 544
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
S G + D ++YN L++GYC+ ++DA + REML GI TY+T+ +
Sbjct: 545 LSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRF 604
Query: 220 SH------------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
S +Y ++GL KN V EA K+F ++ + L I T N +
Sbjct: 605 SEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIM 664
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I L K GR + A +F + + GL PDV TY ++ +EG ++ + L ME++G
Sbjct: 665 IGALFKSGRNEDAMHLFATI-SSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723
Query: 322 LEPN 325
PN
Sbjct: 724 TTPN 727
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 144/347 (41%), Gaps = 63/347 (18%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTL----------------ALVALNLFEEMVNEFGVICK 84
+A +LF L +VI FN L + + ++LF M+ E +
Sbjct: 32 DALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIKVT 91
Query: 85 PDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NC 133
PD T + +I C+ G ++ G R + + +N + L ++ EA +
Sbjct: 92 PDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDI 151
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFA-----------------WWSKGCRHDVYSYNILIN 176
L++ M + P+ +YNTL+ GF + C +V SY I+IN
Sbjct: 152 LVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVIN 211
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+ + V+ A +L EM+ GI+ + TY T+ M V P
Sbjct: 212 GFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKP 271
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ Y I G G E +++ + H T L++ LC GR + A +F
Sbjct: 272 DNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLF 331
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G+ P+V Y I+IHG+ +G + + LL M E GL P+
Sbjct: 332 DSMIRK-GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 151/364 (41%), Gaps = 55/364 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + +++ PN+ FNSL+ GLCT + +A + ++ P+V+
Sbjct: 426 LGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVF 485
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FNT+ + A L + M V +P V++ T +I G C G
Sbjct: 486 FNTILCNLCTKGQVMKAQRLIDLMER---VGTRPGVISYTTLIGGHCLVGRIDEAAKSLD 542
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G++PD T N + + G++++A + M++ + P TY+T++ G
Sbjct: 543 VMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTR 602
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + +++ YNI++NG K+ V++A L + + S+ + + TT+N
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662
Query: 208 T----------------LFMAINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
LF I++ + PD Y + L + G++ E +FSA+
Sbjct: 663 IMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS 722
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
N L+ L G + A + + + + T ++I ++ H
Sbjct: 723 GTTPNSRMLNALVRRLLHRGDITRA-GAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHH 781
Query: 310 ANGL 313
A L
Sbjct: 782 ATSL 785
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTLA---------LVA 68
F P++VT++++I GLC G++ EA LF K+ C N + +N L A
Sbjct: 109 FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERA 168
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L EEM ++ V PD +T I+ GLC+ G M +G PDVV N +
Sbjct: 169 YKLLEEMASKGYV---PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL 225
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGC 164
D L K+GK +EA L + +I + P+T TYN+++ G A S GC
Sbjct: 226 LDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGC 285
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
+ +Y+I+++G+C+ + V+DA + EM G D TYN L
Sbjct: 286 APNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHE 345
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M N PD Y+ ++GL K V +A +F + K V + T N L+DGLC
Sbjct: 346 LFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLC 405
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
K G+L A D+ M G PD V YN +++G K+G+H +A+ L M+E G
Sbjct: 406 KAGKLDEAKDLLDQ-MTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 460
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 180/376 (47%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G+ L ++L + +P+ + +N LI G +GR+ EA RL++++ +P++ T+
Sbjct: 22 GKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTY 81
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
N+L A+ LF+ M E G +PDVVT + II GLCK G
Sbjct: 82 NSLLNAFCKETKMKEAMELFKTMA-EKGF--EPDVVTYSTIISGLCKTGKVTEALEMLFH 138
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+++G + V N + + L KD +E A LLE M + P+ TYNT++ G
Sbjct: 139 KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMG 198
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ S+G DV +YN L++ K+ ++A+ L ++++++G D TYN
Sbjct: 199 KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYN 258
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
++ M + P+ Y+ + G + V +A KV +
Sbjct: 259 SILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKI 318
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + T N L+DGLCK + A ++F ++ N G PD+V+Y+++++G CK +
Sbjct: 319 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN-GCAPDIVSYSVVLNGLCKTNKVHD 377
Query: 310 ANGLLLDMEETGLEPN 325
A L M E L P+
Sbjct: 378 ARVLFDRMIERKLVPD 393
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 154/344 (44%), Gaps = 63/344 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
+PN TF ++K C +G++ + +LF+++ P+ I +N L A
Sbjct: 5 SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
L+EEMV+ V +P + T ++++ CK+ M ++G PDVVT + +
Sbjct: 65 LYEEMVS---VGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121
Query: 121 NLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L K GK+ EA L MI+R GC + +YN LING C
Sbjct: 122 GLCKTGKVTEALEMLFHKMIER---------------------GCSANTVAYNALINGLC 160
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
KD N+E A L EM S+G D TYNT+ M PD
Sbjct: 161 KDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVV 220
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y +D LYK G EAMK+F + + T N ++ GL + + A ++F +
Sbjct: 221 AYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 280
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G P+ TY+I++ G C+ + A+ +L +M + G P+
Sbjct: 281 VAS-GCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPD 323
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + P+ VT+NS++ GL + + EA +FKK+ C PN T+
Sbjct: 233 GKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + A + EEM ++ G + PDVVT ++DGLCK
Sbjct: 293 SIVLSGHCRAKKVDDAHKVLEEM-SKIGAV--PDVVTYNILLDGLCKTNLVDKAHELFST 349
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D G PD+V+ +V+ + L K K+ +A L + MI+R + P+ T+N LMDG K
Sbjct: 350 MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGK 409
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
GC D +YN L+NG K A L + M +G +D
Sbjct: 410 LDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 184/413 (44%), Gaps = 93/413 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---NVFCCDPN 57
M R GF +L N VTF +LI+GL E ++ +A LFKKL N+ C+P+
Sbjct: 120 MHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI--CEPD 177
Query: 58 VITFNTL------------ALVALNLFEEMVNE---------FGVICK------------ 84
+ + T+ A L L E+ + + CK
Sbjct: 178 EVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLN 237
Query: 85 --------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
PD++T T++IDGL K M+ + PDV T N + D L K+G
Sbjct: 238 EMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEG 297
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K+E+A ++ MI++ V PN TYN +MDG+ + KG D+ SY
Sbjct: 298 KVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYT 357
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------------- 217
LINGY + + ++ A+ L RE+ G++ T + L + V
Sbjct: 358 ALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAA 417
Query: 218 ---PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P+ + + T + G +KNG V EAM F + + I+ +I+GLCK G+L A
Sbjct: 418 GHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKA 477
Query: 275 WDIFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F L P GL PDV+TY MI G+C+EG +A +L ME+ G P+
Sbjct: 478 HATFEKL---PLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPD 527
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 36/222 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN +T+N ++ G C G++ A R+F + +P++I++ L A+ L
Sbjct: 316 PNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQL 375
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F E +++ G+ KP +VTC+ ++ GL + G M G P++ T +
Sbjct: 376 FRE-ISQNGL--KPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGG 432
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHD 167
K+G +EEA + +R + N Y +++G A + K G D
Sbjct: 433 YFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPD 492
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
V +Y +I+GYC++ +++A + R+M G D TYN +
Sbjct: 493 VITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVI 534
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L I + P++VT + L++GL GR A F ++ PN+ T TL
Sbjct: 375 LFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYF 434
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDV 112
L EE ++ F + + ++ T +I+GLCK+G +D+ G+ PDV
Sbjct: 435 KNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNG-KLDKAHATFEKLPLIGLHPDV 493
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+T M ++G ++EA +L M P+ TYN ++ GF SK
Sbjct: 494 ITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSK 543
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++DA SL R+M++ A +++ L A+ ++ S V + + + ++K ++A +
Sbjct: 53 LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFRE-IHKLRIPVDAFALS 111
Query: 244 SAIGN----HK-----CVLTIE----------TCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ + + H+ VL I T LI GL ++K A +F L++
Sbjct: 112 TVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRE 171
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD V Y ++ G CK+G QKA LL ME+ +P+
Sbjct: 172 NICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPD 212
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 171/358 (47%), Gaps = 58/358 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------------LVAL 69
N+ TFN I GLC G++ +A + + + PNV+T+NTL A
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD--------GF--MMDQGMRPDVVTLNVMT 119
+EM+ IC P+ VT +IDG CKD F M QG++P++VT N +
Sbjct: 259 AFMKEML--ANKIC-PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLI 315
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCR 165
+ L +GK+EEA L + M+ + PN TYN L++GF +
Sbjct: 316 NGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELV 375
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V ++N +I+ YCK+ +E+ SLC ML EGI + +TYN L
Sbjct: 376 PNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKEL 435
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + D Y IDGL KN A K+ + + N T N L+DG C
Sbjct: 436 LNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCM 495
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+LK A ++ M+ P+VVTYN++I G+CK + + ANGLL +M E GL PN
Sbjct: 496 EGKLKAALNV-RTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPN 552
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 157/329 (47%), Gaps = 54/329 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L + PN VTFN+LI G C + + A + F+++ PN++T+
Sbjct: 252 GKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTY 311
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N+L A++L+++MV G+ KP++VT +I+G CK M +
Sbjct: 312 NSLINGLCNNGKLEEAIDLWDKMV---GLGLKPNIVTYNALINGFCKKKMMKEATKVFDD 368
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
Q + P+V+T N M D K+G MEE L M+ + PN TYN L+ G
Sbjct: 369 VSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQD 428
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + DV +YNILI+G CK+ +A L EM + G++ + TYNT
Sbjct: 429 LQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNT 488
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +DG G + A+ V + + + + T N LI G CKI
Sbjct: 489 L-----------------MDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKI 531
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+L+ A + + +++ GL P+ TY+I+
Sbjct: 532 NKLEAANGLLNEMLEK-GLNPNRTTYDIV 559
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 127/259 (49%), Gaps = 40/259 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ PN+VT+N+LI G C + + EA ++F ++ PNVITF
Sbjct: 322 GKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITF 381
Query: 62 NTL--ALVALNLFEE-------MVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A + EE M++E G++ P+V T +I GLC+
Sbjct: 382 NTMIDAYCKEGMMEEGFSLCSSMLDE-GIL--PNVSTYNCLIAGLCRKQDLQAAKELLNE 438
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M ++G++ DVVT N++ D L K+ K A LL M + PN TYNTLMDG+ K
Sbjct: 439 MENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGK 498
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN- 207
+ +V +YN+LI GYCK +E A L EML +G+ + TTY+
Sbjct: 499 LKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI 558
Query: 208 -TLFMAINNVPPD--SHVY 223
L M PD H+Y
Sbjct: 559 VRLEMLEKGFSPDIEGHLY 577
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 48/286 (16%)
Query: 84 KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
K + +C ++ L K+ M+ + + ++ T N+ + L + GK+ +A
Sbjct: 162 KLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAED 221
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF------------------AWWSKGCRHDVYSYNILI 175
+E M ++PN TYNTL+DG+ +K C ++V ++N LI
Sbjct: 222 AIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEV-TFNTLI 280
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VP 217
+G+CKD NV A EM +G++ + TYN+L + N +
Sbjct: 281 DGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLK 340
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ Y I+G K + EA KVF + + V + T N +ID CK G ++ + +
Sbjct: 341 PNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSL 400
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
++ + G+ P+V TYN +I G C++ Q A LL +ME GL+
Sbjct: 401 CSSML-DEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLK 445
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L +L PN+ T+N LI GLC + + A L ++ +V+T+
Sbjct: 392 GMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTY 451
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L + A L EM F + KP+ VT ++DG C +G
Sbjct: 452 NILIDGLCKNDKSRNAEKLLNEM---FNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTR 508
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + +P+VVT NV+ K K+E AN LL M+++ +NPN TY+ + K
Sbjct: 509 MEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVR--LEMLEK 566
Query: 163 GCRHDV--YSYNI 173
G D+ + YNI
Sbjct: 567 GFSPDIEGHLYNI 579
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 28/187 (14%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G + + S N L++ K+ + D + +EM+ I + T+N
Sbjct: 160 GFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKA 219
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC------ 258
M + P+ Y T +DG K G A K++ A K +L + C
Sbjct: 220 EDAIEDMKAWGISPNVVTYNTLVDGYCKRG---SAGKMYKAEAFMKEMLANKICPNEVTF 276
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG CK + A F MQ GL P++VTYN +I+G C G+ ++A L M
Sbjct: 277 NTLIDGFCKDENVAAAKKAFEE-MQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMV 335
Query: 319 ETGLEPN 325
GL+PN
Sbjct: 336 GLGLKPN 342
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 181/402 (45%), Gaps = 100/402 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++TF +L+ GLC EGR++EA L ++ P+ IT+ T + ALNL
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------------------------- 102
+M E I KP+VV + IIDGLCKDG
Sbjct: 240 LRKM-EEISHI-KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297
Query: 103 ----------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
M+++ + P+VVT N + + K+GK EA L + M+ R + PN
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357
Query: 147 TCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T TYN+++DGF +KGC DV+++ LI+GYC + ++D + L
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
EM G+ A+ TYNTL M + V PD T +DGL NG
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477
Query: 235 FVLEAMKVFSAIGNHKCVL-----------TIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ +A+++F A+ K L + T N LI GL G+ A +++ M
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE-MP 536
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ PD +TY+ MI G CK+ + +A + + M PN
Sbjct: 537 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 171/386 (44%), Gaps = 66/386 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + PN+VT+N +I G C GR A RL +++ PNV+T+
Sbjct: 267 GRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTY 326
Query: 62 NTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A V A L++EM+ G+I P+ +T ++IDG CK
Sbjct: 327 NALINAFVKEGKFFEAAELYDEMLPR-GII--PNTITYNSMIDGFCKQDRLDAAEDMFYL 383
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G PDV T + D ++++ LL M +R + NT TYNTL+ GF
Sbjct: 384 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 443
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE----------- 197
S G D+ + N L++G C + ++DA+ + + M
Sbjct: 444 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 503
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G+ D TYN L M + PD+ Y++ IDGL K + EA
Sbjct: 504 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++F ++G+ + T N LI+G CK GR+ ++F M G+ D + Y +I+
Sbjct: 564 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELF-CEMGRRGIVADAIIYITLIY 622
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF K G A + +M +G+ P+
Sbjct: 623 GFRKVGNINGALDIFQEMISSGVYPD 648
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 46/349 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++ +F LIK C+ ++ A F KL P+V+TF TL L + E ++ F
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
IC+PDV+T T +++GLC++G M++ G++PD +T D + K G
Sbjct: 175 HQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTV 234
Query: 130 EANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
A LL M + + PN Y+ ++DG KG ++ +YN +
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCM 294
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I G+C A L +EML I + TYN L A +
Sbjct: 295 IGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 354
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P++ Y + IDG K + A +F + C + T LIDG C R+ +
Sbjct: 355 IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGME 414
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ H M GL + VTYN +IHGFC G A L M +G+ P+
Sbjct: 415 LLHE-MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 100/348 (28%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P++ TF +LI G C RI + L ++ N +T+NTL AL+
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L ++M++ +C PD+VTC ++DGLC +G + D G+
Sbjct: 450 LSQQMIS--SGVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVE 506
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV+T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 507 PDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ SK +V ++N LINGYCK V+D + L EM GI ADA Y TL
Sbjct: 567 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG--- 623
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
F +GN I+G A
Sbjct: 624 ---------------------------FRKVGN-------------ING---------AL 634
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
DIF ++ + G+ PD +T M+ GF + + ++A +L D++ LE
Sbjct: 635 DIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 31/255 (12%)
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+DG + G R + + L + + +E+A L M++ P+ +N LM
Sbjct: 36 RDGESGEAGFRGESLKLRSGSYEIKG---LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVV 92
Query: 159 WWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
K R D+YS+ ILI +C + A+S ++ G+ D
Sbjct: 93 RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152
Query: 205 TYNTLFMAI--------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
T+ TL + PD +TT ++GL + G V+EA+ + + +
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T +DG+CK+G A ++ + + + P+VV Y+ +I G CK+G+H +
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272
Query: 311 NGLLLDMEETGLEPN 325
+ L ++M++ G+ PN
Sbjct: 273 HNLFIEMQDKGIFPN 287
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ A+ FV +G F+PN+VTFN+LI G C GR+ + LF ++ + I
Sbjct: 560 LDEATQMFVSMGS---KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+ TL AL++F+EM++ GV PD +T N++ G
Sbjct: 617 YITLIYGFRKVGNINGALDIFQEMISS-GVY--PDTITIRNMLTGF 659
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 181/402 (45%), Gaps = 100/402 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++TF +L+ GLC EGR++EA L ++ P+ IT+ T + ALNL
Sbjct: 180 PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNL 239
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------------------------- 102
+M E I KP+VV + IIDGLCKDG
Sbjct: 240 LRKM-EEISHI-KPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297
Query: 103 ----------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
M+++ + P+VVT N + + K+GK EA L + M+ R + PN
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357
Query: 147 TCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T TYN+++DGF +KGC DV+++ LI+GYC + ++D + L
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLH 417
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
EM G+ A+ TYNTL M + V PD T +DGL NG
Sbjct: 418 EMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNG 477
Query: 235 FVLEAMKVFSAIGNHKCVL-----------TIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ +A+++F A+ K L + T N LI GL G+ A +++ M
Sbjct: 478 KLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEE-MP 536
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ PD +TY+ MI G CK+ + +A + + M PN
Sbjct: 537 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 166/367 (45%), Gaps = 66/367 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
PN+VT+N +I G C GR A RL +++ PNV+T+N L A V A L
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++EM+ G+I P+ +T ++IDG CK M +G PDV T + D
Sbjct: 346 YDEMLPR-GII--PNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 402
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
++++ LL M +R + NT TYNTL+ GF S G D
Sbjct: 403 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSE-----------GIRADATTYNTLF------ 210
+ + N L++G C + ++DA+ + + M G+ D TYN L
Sbjct: 463 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINE 522
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + PD+ Y++ IDGL K + EA ++F ++G+ + T
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 582
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+G CK GR+ ++F M G+ D + Y +I+GF K G A + +M
Sbjct: 583 NTLINGYCKAGRVDDGLELF-CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMI 641
Query: 319 ETGLEPN 325
+G+ P+
Sbjct: 642 SSGVYPD 648
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 46/349 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++ +F LIK C+ ++ A F KL P+V+TF TL L + E ++ F
Sbjct: 115 DIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF 174
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
IC+PDV+T T +++GLC++G M++ G++PD +T D + K G
Sbjct: 175 HQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTV 234
Query: 130 EANCLLEVMIQ-RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
A LL M + + PN Y+ ++DG KG ++ +YN +
Sbjct: 235 SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCM 294
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I G+C A L +EML I + TYN L A +
Sbjct: 295 IGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGI 354
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P++ Y + IDG K + A +F + C + T LIDG C R+ +
Sbjct: 355 IPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGME 414
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ H M GL + VTYN +IHGFC G A L M +G+ P+
Sbjct: 415 LLHE-MPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 147/343 (42%), Gaps = 100/343 (29%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P++ TF +LI G C RI + L ++ N +T+NTL AL+
Sbjct: 390 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALD 449
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L ++M++ +C PD+VTC ++DGLC +G + D G+
Sbjct: 450 LSQQMISS--GVC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVE 506
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV+T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 507 PDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ SK +V ++N LINGYCK V+D + L EM GI ADA Y TL
Sbjct: 567 FVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYG--- 623
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
F +GN I+G A
Sbjct: 624 ---------------------------FRKVGN-------------ING---------AL 634
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
DIF ++ + G+ PD +T M+ GF + + ++A +L D++
Sbjct: 635 DIFQEMISS-GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 31/255 (12%)
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+DG + G R + + L + + +E+A L M++ P+ +N LM
Sbjct: 36 RDGESGEAGFRGESLKLRSGSYEIKG---LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVV 92
Query: 159 WWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
K R D+YS+ ILI +C + A+S ++ G+ D
Sbjct: 93 RMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVV 152
Query: 205 TYNTLFMAI--------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
T+ TL + PD +TT ++GL + G V+EA+ + + +
Sbjct: 153 TFTTLLHGLCLDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENG 212
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T +DG+CK+G A ++ + + + P+VV Y+ +I G CK+G+H +
Sbjct: 213 LQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDS 272
Query: 311 NGLLLDMEETGLEPN 325
+ L ++M++ G+ PN
Sbjct: 273 HNLFIEMQDKGIFPN 287
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 15/106 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ A+ FV +G F+PN+VTFN+LI G C GR+ + LF ++ + I
Sbjct: 560 LDEATQMFVSMGS---KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAII 616
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+ TL AL++F+EM++ GV PD +T N++ G
Sbjct: 617 YITLIYGFRKVGNINGALDIFQEMISS-GVY--PDTITIRNMLTGF 659
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 168/356 (47%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ V + + + + L ++++F N T N L A+++
Sbjct: 84 PSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSV 143
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M F + +PD VT T +I+GLC +G M + P+ VT ++ D
Sbjct: 144 LSKM---FKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDV 200
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K G + EA C+ E M ++ V PN TYN LM+G+ KGC
Sbjct: 201 LCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPS 260
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
V+SY+ILINGYCK R +++A +L +M + + + TYNTL +
Sbjct: 261 VHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFK 320
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ + P+ Y+ +DGL K+G + EA+K+ +++ K I N LI G+ G
Sbjct: 321 KMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAG 380
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L++A ++F L N G+ P V TYNIMI G KEG +A L ME+ G P+
Sbjct: 381 KLEVAKELFSKLFAN-GIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPD 435
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 37/224 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL ++ PN VT+N+L++GLC +LEA LFKK+ PN+ T++
Sbjct: 276 RIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYS 335
Query: 63 TL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGF--MMDQ 106
L L EE + + +PD+V +I G+ K+ F +
Sbjct: 336 ILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFAN 395
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+RP V T N+M L K+G +EA L M P++C+YN
Sbjct: 396 GIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNV-------------- 441
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+I G+ ++++ A+ L EM+ AD++T+ L
Sbjct: 442 -------IIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLL 478
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L ++ S PN+ T++ L+ GLC G + EA +L + +P+++ +N L
Sbjct: 318 LFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMF 377
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
VA LF ++ F +P V T +I GL K+G M D G P
Sbjct: 378 IAGKLEVAKELFSKL---FANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLP 434
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
D + NV+ ++ A L++ M+ R + ++ T+ L+D
Sbjct: 435 DSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 177/346 (51%), Gaps = 51/346 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + S F P++VT++ L GLC GRI EA L K+++ C PN++T+NTL
Sbjct: 102 LVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLC 161
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A L E +V+ V PDVVT T I+DGLCK+G M+ +G P
Sbjct: 162 KASKTEKAYELLETLVSSGFV---PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTP 218
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
V+T + + L + G+++EA+ + + M+ +D + Y +L++G+ S+
Sbjct: 219 SVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 278
Query: 163 -GCRHDVY--SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
G R Y YN L++GYCK+ +++ ++ +M G + TYN +
Sbjct: 279 DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIV---------- 328
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+DGL K+G V EA ++ + CV + + N +IDGL K + K A +
Sbjct: 329 -------MDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLD 381
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++Q G+ PD VTYN ++ FCKE + A G+L +M + G++P+
Sbjct: 382 QMIQ-AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPD 426
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 168/353 (47%), Gaps = 50/353 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
TP+ VTFNS++ GLC G+ A L + C P+ T+NTL ++ +
Sbjct: 42 TPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKT 101
Query: 75 MVNEF---GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+V+EF G + PDVVT + + DGLCK G M G P++VT N + D
Sbjct: 102 LVDEFVSSGFV--PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDG 159
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K K E+A LLE ++ P+ TY ++DG +GC
Sbjct: 160 LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------MAIN 214
V +Y L+ G C+ V++A + +EM+S+ ADA Y +L ++
Sbjct: 220 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 279
Query: 215 NV--PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ P VY +DG K G + E VF + CV I+T N ++DGLCK G++
Sbjct: 280 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVD 339
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ F M + G PDVV+YNI+I G K + ++A +L M + G+ P+
Sbjct: 340 EAFP-FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPD 391
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 175/366 (47%), Gaps = 53/366 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ + LL ++ S F P++VT+ ++ GLC EGR+ +A ++ + + C P+VIT+
Sbjct: 164 SKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY 223
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QG 107
L A ++F+EMV++ C D + ++++G CK + G
Sbjct: 224 TALMEGLCRTGRVDEAHHIFKEMVSKD---CTADALAYVSLVNGYCKSSRTKEAQKVVDG 280
Query: 108 MR--PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+R P + N + D K+G+++E + E M R PN TYN +MDG
Sbjct: 281 IRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE 340
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ S GC DV SYNI+I+G K ++A + +M+ GI DA TYNTL
Sbjct: 341 AFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMA 400
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M V PD+ Y T I GL + + +A ++ + + CV+
Sbjct: 401 QFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVV 460
Query: 254 TI-ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T N +ID LCK G LK A + M G+ + VTYNI I CKEG+ +A+
Sbjct: 461 SACTTYNTIIDRLCKEGCLKQALLLMDH-MTGHGVEANTVTYNIFIDRLCKEGRLDEASS 519
Query: 313 LLLDME 318
LL +M+
Sbjct: 520 LLSEMD 525
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 158/355 (44%), Gaps = 54/355 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
P++ T+N LI GLC + +A+ + ++ P+ +TFN++ L FE +
Sbjct: 7 APDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHS 66
Query: 78 EFGVI----CKPDVVTCTNIIDGLCK-----------DGFMMDQGMRPDVVTLNVMTDNL 122
V+ C+P T +I GLCK D F + G PDVVT +++ D L
Sbjct: 67 LLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEF-VSSGFVPDVVTYSILADGL 125
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K G+++EA L++ M PN TYNTL+DG SK G DV
Sbjct: 126 CKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+Y I+++G CK+ ++ A+ + ML G TY L
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + D+ Y + ++G K+ EA KV I + I+ N L+DG CK GR
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI---RGTPYIDVYNALMDGYCKEGR 302
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L ++F M G P++ TYNI++ G CK G+ +A L M G P+
Sbjct: 303 LDEIPNVFED-MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 356
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 171/408 (41%), Gaps = 90/408 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR ++ +L TP+++T+ +L++GLC GR+ EA +FK++ C + + +
Sbjct: 199 GRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 258
Query: 62 NTL------------------------------ALV-----------ALNLFEEMVNEFG 80
+L AL+ N+FE+M
Sbjct: 259 VSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG- 317
Query: 81 VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
C P++ T ++DGLCK G M G PDVV+ N++ D L K K +E
Sbjct: 318 --CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 375
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILIN 176
A +L+ MIQ + P+ TYNTLM F + G D +YN LI+
Sbjct: 376 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 435
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADA-TTYNTLF------------------MAINNVP 217
G + + DA L EML G A TTYNT+ M + V
Sbjct: 436 GLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 495
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
++ Y +ID L K G + EA + S + + ++ T +I GLCK +L A +
Sbjct: 496 ANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTT---VIIGLCKAEQLDRASKL 552
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ GL T+N++I F K + +A LL M + G P+
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPS 600
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 166/391 (42%), Gaps = 93/391 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
TP + +N+L+ G C EGR+ E +F+ + C PN+ T+N + +
Sbjct: 284 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 343
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F E ++ G C PDVV+ IIDGL K M+ G+ PD VT N +
Sbjct: 344 FLESMHSAG--CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 401
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------------- 162
K+ + ++A +L+ MI+ V+P+ TYNTL+ G + ++
Sbjct: 402 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 461
Query: 163 -------------------------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
G + +YNI I+ CK+ +++A SL
Sbjct: 462 ACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLL 521
Query: 192 REMLSEGIRADATTYNTLFM-------------------AINNVPPDSHVYTTYIDGLYK 232
EM + +R D +Y T+ + A+ + SH + ID K
Sbjct: 522 SEM--DTLR-DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTK 578
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ EA+ + + C ++ T N +I LCK+ ++ AW++F M G+ V
Sbjct: 579 TKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDE-MAVRGIVASSV 637
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+Y ++I+G C +G+ ++A +L +M + E
Sbjct: 638 SYTVLIYGLCGQGRGKEALQVLEEMASSDCE 668
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 139/324 (42%), Gaps = 57/324 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L +++ + P+ VT+N+L+ C E R +A + K + DP+ +T+NTL
Sbjct: 379 VLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLS 438
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ----GMRP 110
A L EM+ V+ T IID LCK+G +MD G+
Sbjct: 439 QTNRLGDAYELMHEMLRNGCVVSA--CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 496
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------WWSKGC 164
+ VT N+ D L K+G+++EA+ LL M D + +Y T++ G SK
Sbjct: 497 NTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLA 553
Query: 165 RHDV---------YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
R V +++N+LI+ + K + +++A++L M+ G TYN +
Sbjct: 554 REMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCK 613
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
MA+ + S YT I GL G EA++V + + C +
Sbjct: 614 LDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLK 673
Query: 258 CNCLIDGLCKIGRLKIAWDIFHML 281
C L L GR + A ++ +
Sbjct: 674 CRKLYLALRGQGRGEEAAELLRRM 697
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 35/244 (14%)
Query: 3 RASGGFVLLGRILMS-CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R + L+ +L + C T+N++I LC EG + +A L + + N +T+
Sbjct: 442 RLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 501
Query: 62 NTL-----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--PDVV- 113
N L+ +++E + D V+ T +I GLCK +D+ + ++V
Sbjct: 502 NIFIDRLCKEGRLDEASSLLSEMDTL--RDEVSYTTVIIGLCK-AEQLDRASKLAREMVA 558
Query: 114 ---------TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
T N++ D +K +++EA LLE+M+QR +P+ TYN ++
Sbjct: 559 VKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVD 618
Query: 158 -AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
AW +G SY +LI G C ++A+ + EM S D L+
Sbjct: 619 KAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLY 678
Query: 211 MAIN 214
+A+
Sbjct: 679 LALR 682
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 183/375 (48%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +++ F + V++ +LI GLC G A +L ++++ PNV+ +
Sbjct: 142 GEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMY 201
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+T+ LV A +L+ EMV++ PDVVT +++I G C G
Sbjct: 202 STIIDSMCKDKLVNDAFDLYCEMVSKR---ISPDVVTYSSLISGFCVVGKLKYAVDLFNR 258
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + P+V T +++ D K+GK+ EA +L VM++++V + TYN+LMDG+
Sbjct: 259 MISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQ 318
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G DV+SY+I+ING+CK + V++A+ L EM + I + TYN+
Sbjct: 319 VNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNS 378
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M P + Y + +D + KN V +A+ + + I
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T LI+GLCK+GRL A +F L+ G +P++ TY +I+GFC +G +
Sbjct: 439 IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK-GYSPNIYTYTSLINGFCNKGFFDEG 497
Query: 311 NGLLLDMEETGLEPN 325
+L M++ G PN
Sbjct: 498 LAMLSKMKDNGCIPN 512
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 48/333 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P++VT++SLI G C G++ A LF ++ +PNV TF+ L E N
Sbjct: 230 SPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKN 289
Query: 78 EFGVICKP----DVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDNLS 123
V+ K DVVT +++DG C K F M +G+ PDV + ++M +
Sbjct: 290 VLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFC 349
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K ++EA L E M + + PN TYN+L+DG +G ++
Sbjct: 350 KIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNII 409
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN +++ CK+ +V+ A+ L ++ +GI+ PD YT I+G
Sbjct: 410 TYNSILDAICKNNHVDKAIVLLTKIKEKGIQ-----------------PDIFTYTVLING 452
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G + +A KVF + I T LI+G C G + M++ G P
Sbjct: 453 LCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSK-MKDNGCIP 511
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ +TY I+IH ++ ++ KA LL +M GL
Sbjct: 512 NAITYEILIHSLFEKDENDKAEKLLREMIARGL 544
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 39/145 (26%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
VLL +I P++ T+ LI GLC GR+ +A ++F+ L V PN+ T+
Sbjct: 427 AIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTY----- 481
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
T++I+G C GF M D G P+ +T
Sbjct: 482 ------------------------TSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYE 517
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQR 141
++ +L + + ++A LL MI R
Sbjct: 518 ILIHSLFEKDENDKAEKLLREMIAR 542
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + +L+ ++PN+ T+ SLI G C +G E + K+ C PN IT
Sbjct: 456 VGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAIT 515
Query: 61 FNTLALVALNLFEEMVNE 78
+ L +LFE+ N+
Sbjct: 516 YEIL---IHSLFEKDEND 530
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 179/364 (49%), Gaps = 55/364 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT--------- 63
R++ + V++ +LI GLC G+ A RL +K+ C P+V+ +NT
Sbjct: 144 RLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDK 203
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
L A +L+ EM F P+VVT T++I G C G M+ + + P+V
Sbjct: 204 LVRDAFDLYCEM---FEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVC 260
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWSK------ 162
T N + D L K+GKM EA L+ VM++ V P+ TYN LMDG+ A +K
Sbjct: 261 TFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIM 320
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
G DV+SY+++I+G K + +++A+ L M +E + D Y++L
Sbjct: 321 AQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRI 380
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M PP+ YT+ ID L K+ V +A+ + I + + T N L
Sbjct: 381 NSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNIL 440
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+DGLCK GRL A +F L+ G DVVTY+IMI+G CKE +A LL ME+ G
Sbjct: 441 VDGLCKDGRLTDAQKVFQDLLMK-GHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKG 499
Query: 322 LEPN 325
P+
Sbjct: 500 CVPD 503
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 159/396 (40%), Gaps = 84/396 (21%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
R+L P ++ F ++ L LF+++ + N IT N L + L
Sbjct: 39 RMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLR 98
Query: 71 LFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGM-------- 108
+ F I K PD++T T +I GLC +G ++ QG+
Sbjct: 99 QINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYG 158
Query: 109 ---------------------------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
RPDVV N + D L KD + +A L M ++
Sbjct: 159 TLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEK 218
Query: 142 DVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDA 187
V PN TY +L+ GF K +V ++N L++G CK+ + +A
Sbjct: 219 RVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREA 278
Query: 188 VSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDG 229
SL M+ EG+ D TYN L MA V D H Y+ I G
Sbjct: 279 KSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISG 338
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K + EAM +F + N + + + LIDGLCK GR+ A M + G P
Sbjct: 339 LSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDE-MHDRGQPP 397
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V+TY +I CK Q KA LL +++ G++ N
Sbjct: 398 NVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQAN 433
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 155/336 (46%), Gaps = 61/336 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F LL +++ PN+ TFN+L+ GLC EG++ EA L + P+V T
Sbjct: 237 VGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFT 296
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQ 106
+N L A A N+F M + GV C DV + + +I GL K + + +
Sbjct: 297 YNALMDGYFLVKEAGKAKNVFNIMA-QMGVTC--DVHSYSVMISGLSKMKMLDEAMDLFE 353
Query: 107 GMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
GMR PDVV + + D L K G++ A ++ M R PN TY +L+D
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL---- 409
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
CK V+ A++L +++ +GI+A+ TYN L
Sbjct: 410 -----------------CKSHQVDKAIALLKKIKDQGIQANMYTYNIL------------ 440
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+DGL K+G + +A KVF + + + T + +I+GLCK A +
Sbjct: 441 -----VDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSK- 494
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
M++ G PD + Y +I+ F ++ + KA LL +M
Sbjct: 495 MEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 181/364 (49%), Gaps = 55/364 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
+++ F + V++ +LI GLC GRI A +L K+++ PN + +N +
Sbjct: 156 KVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAK 215
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVV 113
LV A +L+ +MV + IC PDV T +I G D F M + + P+V
Sbjct: 216 LVNDAFDLYSQMVAK--RIC-PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVY 272
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T N++ D K+GK+ +A +L +M++ D+ P+ TYN+LMDG+ +
Sbjct: 273 TFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSM 332
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------- 209
S G +V Y ++NG+CK + V++A++L EM I + TY++L
Sbjct: 333 ASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRI 392
Query: 210 FMAINNV--------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
F A+ V PP+ Y++ +D L KN V +A+ + + + + + T L
Sbjct: 393 FYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTIL 452
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I GLC+ GRL+ A ++F L+ G DV Y +MI GFC +G KA LL ME+ G
Sbjct: 453 IKGLCQSGRLEDAQNVFEDLLVK-GYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNG 511
Query: 322 LEPN 325
PN
Sbjct: 512 CIPN 515
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 163/389 (41%), Gaps = 84/389 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
TP FN ++ L A L +++ + + + TFN L L L +
Sbjct: 58 TPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFS 117
Query: 78 EFGVICK----PDVVTCTNIIDGLC----------------KDGFMMDQG---------- 107
F I K P +T +I GLC GF +DQ
Sbjct: 118 IFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLC 177
Query: 108 -------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
++P+ V N++ DN+ K + +A L M+ + + P+
Sbjct: 178 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVF 237
Query: 149 TYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYN L+ GF+ SK +VY++NIL++G+CK+ V DA + M
Sbjct: 238 TYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM 297
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
+ + I+ D TYN+L MA V + +YTT ++G K V
Sbjct: 298 MKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMV 357
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+ +F + K + + T + LIDGLCK+GR+ A + M + G P++VTY+
Sbjct: 358 DEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDE-MHDRGQPPNIVTYSS 416
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ CK KA LL ++++ G+ P+
Sbjct: 417 ILDALCKNHHVDKAIALLTNLKDQGIRPD 445
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 135/311 (43%), Gaps = 56/311 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L +++ P++ T+N+LI G ++ A LF K+ +PNV TFN L
Sbjct: 220 AFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNIL-- 277
Query: 67 VALNLF--EEMVNEFGVI--------CKPDVVTCTNIIDGLC--------KDGF--MMDQ 106
++ F E VN+ V+ KPDVVT +++DG C KD F M
Sbjct: 278 --VDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ +V M + K ++EA L E M R + PN TY++L+DG
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYA 395
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+G ++ +Y+ +++ CK+ +V+ A++L + +GIR D TY L
Sbjct: 396 LKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKG 455
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ + D + YT I G GF +A+ + S + ++ C+
Sbjct: 456 LCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPN 515
Query: 255 IETCNCLIDGL 265
+T +I L
Sbjct: 516 AKTYELVILSL 526
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 42/248 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + V+L ++ P++VT+NSL+ G C+ ++ +A +F + NV +
Sbjct: 285 GKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIY 344
Query: 62 NTLA-------LV--ALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCKDGF------- 102
T+ +V A+NLFEEM C+ P+VVT +++IDGLCK G
Sbjct: 345 TTMVNGFCKIKMVDEAINLFEEMR------CRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M D+G P++VT + + D L K+ +++A LL + + + P+ TY L+ G
Sbjct: 399 VDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQ 458
Query: 160 WS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG DVY+Y ++I G+C + A++L +M G +A T
Sbjct: 459 SGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKT 518
Query: 206 YNTLFMAI 213
Y + +++
Sbjct: 519 YELVILSL 526
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 175/368 (47%), Gaps = 64/368 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNVIT 60
GR LL R+L PN +T+ +++ G+C G + A L +K+ V PNV+
Sbjct: 196 GRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVI 255
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NT+ A NLF EM E + PD+VT +I+G C G
Sbjct: 256 YNTIIDGLWKDGRHSDAHNLFIEM-QEKEIF--PDIVTYNCMINGFCISGRWSDAEQLLQ 312
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW- 160
M+++ + PDVVT + + + K+GK EA L + M+ R + P+T TY++++DGF
Sbjct: 313 EMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQN 372
Query: 161 -------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KGC D+ ++N LI GYC+ + V+D + L EM G+ A+ TY
Sbjct: 373 RLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 432
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL I G + G + A + + + + TCN L+DGLC
Sbjct: 433 TL-----------------IHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCD 475
Query: 268 IGRLKIAWDIFHMLMQNP----------GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G+LK A ++F + ++ G+ PDV TYNI+I G EG+ +A L +M
Sbjct: 476 NGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEM 535
Query: 318 EETGLEPN 325
G+ P+
Sbjct: 536 PHRGIVPD 543
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 165/373 (44%), Gaps = 52/373 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR L ++ M N +F L+K C+ ++ A F K+ P V+T
Sbjct: 94 MGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVT 153
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
FNTL L + E ++ F +CKP+VVT T +++GLC++G M++ G+
Sbjct: 154 FNTLLHGLCVEDRISEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGL 213
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGFAWWSKGCRH- 166
+P+ +T + D + K G A LL M + + PN YNT++DG W G RH
Sbjct: 214 QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGL--WKDG-RHS 270
Query: 167 ----------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D+ +YN +ING+C DA L +EML I D T++ L
Sbjct: 271 DAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALI 330
Query: 211 MAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
A ++ P + Y++ IDG K + A +F C
Sbjct: 331 NAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCS 390
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
I T N LI G C+ R+ + H M GL + +TY +IHGFC+ G A
Sbjct: 391 PDIITFNTLIAGYCRAKRVDDGIKLLHE-MTEAGLVANTITYTTLIHGFCQVGDLNAAQD 449
Query: 313 LLLDMEETGLEPN 325
LL +M +G+ PN
Sbjct: 450 LLQEMISSGVCPN 462
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/386 (26%), Positives = 169/386 (43%), Gaps = 66/386 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L + P++VT+N +I G C GR +A +L +++ +P+V+TF
Sbjct: 267 GRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTF 326
Query: 62 NTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A V A L++EM+ + P VT +++IDG CK
Sbjct: 327 SALINAFVKEGKFFEAEELYDEMLPRSII---PSTVTYSSMIDGFCKQNRLDAAEHMFYL 383
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G PD++T N + + ++++ LL M + + NT TY TL+ GF
Sbjct: 384 TPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 443
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE----------- 197
S G +V + N L++G C + ++DA+ + + M
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFN 503
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G+ D TYN L M + PD+ Y++ IDGL K + EA
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++F ++G+ + T N LI G CK G + ++F + Q G+ D +TY +I+
Sbjct: 564 TQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQR-GIVADAITYITLIY 622
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF K A + +M +G+ P+
Sbjct: 623 GFRKVDNIDGALDIFQEMISSGVYPD 648
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 51/269 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P+++TFN+LI G C R+ + +L ++ N IT+ TL A +
Sbjct: 390 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQD 449
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------------------GMR 109
L +EM++ +C P+VVTC ++DGLC +G + D G+
Sbjct: 450 LLQEMIS--SGVC-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVE 506
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV T N++ L +GK EA L E M R + P+T TY++++DG
Sbjct: 507 PDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQM 566
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMA 212
+ SK DV ++N LI GYCK V+D + L EM GI ADA TY TL F
Sbjct: 567 FDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRK 626
Query: 213 INNVPPDSHVYTTYI-DGLYKNGFVLEAM 240
++N+ ++ I G+Y + + M
Sbjct: 627 VDNIDGALDIFQEMISSGVYPDTITIRNM 655
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P+ +T++S+I GLC + R+ EA ++F + P+V+TFNTL +V L L
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLEL 601
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQGMRPDVVTLNVMTDN 121
F EM + G++ D +T +I G K DG M+ G+ PD +T+ M
Sbjct: 602 FCEM-GQRGIVA--DAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTG 658
Query: 122 LSKDGKMEEANCLLE 136
L ++E A +LE
Sbjct: 659 LWSKEELERAVAMLE 673
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F+P++VTFN+LI G C G + + LF ++ + IT+ TL AL
Sbjct: 575 FSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGAL 634
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL 97
++F+EM++ GV PD +T N++ GL
Sbjct: 635 DIFQEMISS-GVY--PDTITIRNMLTGL 659
>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
Length = 556
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 173/335 (51%), Gaps = 54/335 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN---------TLALVALNLFEE 74
V + +LI GLC GR ++A +L +++ PN++ +N L A +L+ +
Sbjct: 190 VCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLK 249
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+V + G+ PD++T T++I G C+ G M+++ + P+V T NV+ D +
Sbjct: 250 IV-DMGI--DPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCR 306
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYS 170
GKM EA + +M++R P+ T+NTL+ G + +G DV+S
Sbjct: 307 KGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWS 366
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y ILI GYCK + +++AVSL EM + + D Y++L IDGL
Sbjct: 367 YTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSL-----------------IDGL 409
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+G + A ++FS I N + T N LID CKI + + ++F LM GLTP
Sbjct: 410 CKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFK-LMCGKGLTPT 468
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+TYNI+I+G+CK + ++A LL M+ L P+
Sbjct: 469 VLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPD 503
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 130/280 (46%), Gaps = 53/280 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+ TFN LI C +G+++EA +F + P+++TFNTL L A L
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKL 351
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDN 121
F+ V E G++ PDV + T +I G CK + + MR D+V + + D
Sbjct: 352 FDT-VFERGIL--PDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDG 408
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K G++ A L + PN TYN L+D F KG
Sbjct: 409 LCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPT 468
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +YNILINGYCK + + +A++L M S+ + D+ TYN+LF
Sbjct: 469 VLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLF----------------- 511
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
DGL K+G + +A ++F + + + T N L+D CK
Sbjct: 512 DGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCK 551
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 48/337 (14%)
Query: 33 LCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--ALNLFEEMVNEFGVICKPDVVTC 90
+ T R+ A F + C N ++ + A+ LF ++N + P V+
Sbjct: 31 IATTTRLRYAFHKFLRFFSHCPKQNAKILSSFNGIDDAVTLFNHLINMQPL---PSVIQF 87
Query: 91 TNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
II + K M+ +G+ P + TL++ + G+M A +L ++++
Sbjct: 88 NTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLK 147
Query: 141 RDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILINGYCKDRNVED 186
R PN T T+M G ++G D Y LING CK D
Sbjct: 148 RGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSID 207
Query: 187 AVSLCREMLSEGIRADATTYNT----------------LFMAINN--VPPDSHVYTTYID 228
A L +EM + ++ + YN L++ I + + PD YT+ I
Sbjct: 208 AFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIR 267
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + G E ++ + N + T N LID C+ G++ A +F+++++ G
Sbjct: 268 GFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKR-GQQ 326
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+VT+N +I G C G +A L + E G+ P+
Sbjct: 327 PDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPD 363
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 71/232 (30%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VTFN+LI G C G +LEA +LF + P+V ++ L + A++L
Sbjct: 327 PDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSL 386
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------------------------ 101
F EM + V+ D+V +++IDGLCK G
Sbjct: 387 FNEMRCKNMVL---DIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDA 443
Query: 102 ---------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
M +G+ P V+T N++ + K ++ EA LL VM +++ P+
Sbjct: 444 FCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPD 503
Query: 147 TCTYNTLMDGF--------AWWSKGCRH------DVYSYNILINGYCKDRNV 184
+ TYN+L DG AW H DV +YN+L++ +CK ++V
Sbjct: 504 SITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 183/367 (49%), Gaps = 66/367 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
N+VTF +L+ GLC EGR+L+A L ++ P+ +T+ T+ + ALN+
Sbjct: 8 ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+M +E + K +VV + I+D LCKDG M ++G+ P+V+T N M D
Sbjct: 68 LRKM-DESQI--KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSKGCRHDVY-- 169
GK +A LL MI+R+++P+ T++ L++ F + + R +++
Sbjct: 125 YCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPT 184
Query: 170 --SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y+ +I+G+CK +EDA + M+S+G D T NTL
Sbjct: 185 TITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQV 244
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N V PD T + GL +NG + +A+++F K L TC
Sbjct: 245 GNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATC 304
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I+G+CK ++ AWD+F+ L N G+ DVVTYNI+I F KEG +A + L+M
Sbjct: 305 NIIINGMCKGNKVDEAWDLFNSLPVN-GVETDVVTYNILIGVFVKEGNFLRAEDIYLEML 363
Query: 319 ETGLEPN 325
G+ P+
Sbjct: 364 CKGIIPS 370
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 165/363 (45%), Gaps = 65/363 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ SG L +L P +T++S+I G C R+ +A +F + C P++IT
Sbjct: 164 GKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITL 223
Query: 62 NTL--------------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
NTL VA +LF+EM++ GV PD+VTC ++ GLC++G
Sbjct: 224 NTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISN-GV--SPDIVTCNTLLAGLCENG 280
Query: 102 FM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
+ M D T N++ + + K K++EA L + V + TYN
Sbjct: 281 KLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYN 340
Query: 152 TLMDGFAWWSKGCR-HDVY-------------SYNILINGYCKDRNVEDAVSLCREMLSE 197
L+ F R D+Y +YN +++G+CK +E+A + M+SE
Sbjct: 341 ILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSE 400
Query: 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
G D T++TL I G K G V + +++FS + V T
Sbjct: 401 GCSPDVVTFSTL-----------------IKGYCKAGRVDDGLELFSEMCQRGLVADTIT 443
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI G CK+G L A DIF M + G+ PD +T+ M+ G C + + QK +L D+
Sbjct: 444 YNALIHGFCKVGDLNGAQDIFEE-MVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502
Query: 318 EET 320
+++
Sbjct: 503 QKS 505
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 166/369 (44%), Gaps = 70/369 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
PN++T+N +I G C+ G+ +A +L + + DP+V+TF+ L A V A L
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172
Query: 72 FEEMV--NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
+ EM+ N F P +T +++IDG CK M+ +G PD++TLN +
Sbjct: 173 YREMLRRNIF-----PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLI 227
Query: 120 DNLSKD-----------GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------ 156
D + G + A L + MI V+P+ T NTL+ G
Sbjct: 228 DGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALE 287
Query: 157 -FAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
F + K D + NI+ING CK V++A L + G+ D TYN L
Sbjct: 288 MFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFV 347
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + P + Y + +DG K + EA ++ ++ + C +
Sbjct: 348 KEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVV 407
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T + LI G CK GR+ ++F + Q GL D +TYN +IHGFCK G A + +
Sbjct: 408 TFSTLIKGYCKAGRVDDGLELFSEMCQR-GLVADTITYNALIHGFCKVGDLNGAQDIFEE 466
Query: 317 MEETGLEPN 325
M +G+ P+
Sbjct: 467 MVSSGVCPD 475
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 119/286 (41%), Gaps = 79/286 (27%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M++ G +VVT + + L ++G++ +A L++ M++ P+ TY T+++G
Sbjct: 1 MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60
Query: 158 --------------------------------------------AWWSKGCRHDVYSYNI 173
KG +V +YN
Sbjct: 61 TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NN 215
+I+GYC DA L R+M+ I D T++ L A N
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID-----------G 264
+ P + Y++ IDG K+ + +A +F + + C I T N LID G
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C++G + +A D+F ++ N G++PD+VT N ++ G C+ G+ +KA
Sbjct: 241 FCQVGNVNVAQDLFQEMISN-GVSPDIVTCNTLLAGLCENGKLEKA 285
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 19/180 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
GC +V ++ L+NG C++ V A++L M+ EG + DA TY T+
Sbjct: 5 GCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSA 64
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + + + +Y+ +D L K+G ++A +F+ + + T NC+IDG
Sbjct: 65 LNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
C G+ A + +++ + PDVVT++ +I+ F KEG+ A L +M + P
Sbjct: 125 YCSYGKWSDAEQLLRDMIER-NIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFP 183
>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 179/351 (50%), Gaps = 44/351 (12%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
+L F N V++ +LI GLC G A ++ +++ +V+ ++T+
Sbjct: 166 HVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDK 225
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVV 113
LV A L+ EM+ + P VVT ++I G C K+ F M+ + + PDV
Sbjct: 226 LVNDAYELYSEMITKR---ISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVY 282
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
T N++ D L K+GK++EA + VM++ V P+ TY++LMDG+ ++ + + Y+I
Sbjct: 283 TFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAK-HVYSI 341
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
+ING+CK + V+ A+SL EM I D TYN+L M +
Sbjct: 342 VINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSG 401
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P D Y + ID L KN V +A+ + I + L + T N LIDGLCK GRLK A
Sbjct: 402 QPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQ 461
Query: 276 DIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF +L++ LT V TY IMI+G C EG +A LL ME+ G P+
Sbjct: 462 VIFQDLLIKGYNLT--VWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPD 510
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 43/336 (12%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+ L ++ +P +VT NSLI G C G+ EA L +++ + +P+V TFN L
Sbjct: 230 AYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVD 289
Query: 65 ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
AL +E + V+ K PDVVT ++++DG C ++++ + V +++ +
Sbjct: 290 ALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYC----LVNEVNKAKHV-YSIVIN 344
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------FAW------WSKGCRH 166
K +++A L M R + P+T TYN+L+DG +AW G
Sbjct: 345 GFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPA 404
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+ +YN LI+ CK+ +V+ A++L +++ +GI+ D TYN L
Sbjct: 405 DIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNIL----------------- 447
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
IDGL K G + +A +F + LT+ T +I+GLC G L A + M++ G
Sbjct: 448 IDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSK-MEDNG 506
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PD VT +I + ++++A LL +M GL
Sbjct: 507 CVPDAVTCETIIRALFENDKNERAEKLLREMIARGL 542
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G++P++V+L+++ + G+M A + +++ +PNT T TL+ GF K
Sbjct: 101 GIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEA 160
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G + SY LING CK A+ + R++ + + D Y+T+
Sbjct: 161 LHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTI--- 217
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
IDGL K+ V +A +++S + + T+ T N LI G C +G+ K
Sbjct: 218 --------------IDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFK 263
Query: 273 IAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + M+++N + PDV T+NI++ CKEG+ ++A + M + G+ P+
Sbjct: 264 EAFGLLREMVLKN--INPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPD 315
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 74/301 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F LL +++ P++ TFN L+ LC EG+I EA + P+V+T
Sbjct: 259 VGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVT 318
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVI--------------CK---PDVVTCTNII 94
+++L LV A +++ ++N F I C+ PD VT ++I
Sbjct: 319 YSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLI 378
Query: 95 DGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
DGLCK G M D G D++T N + D L K+ +++A L++ +
Sbjct: 379 DGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKI------ 432
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+G + D+Y+YNILI+G CK ++DA + +++L +G
Sbjct: 433 ---------------KDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVW 477
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
T YT I+GL G + EA + S + ++ CV TC +I
Sbjct: 478 T-----------------YTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRA 520
Query: 265 L 265
L
Sbjct: 521 L 521
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 180/370 (48%), Gaps = 52/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL- 64
GF LG+I+ + + V F L++ LC + R +A + +++ C P+V +++TL
Sbjct: 32 GFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLL 91
Query: 65 -ALVALNLFEE------MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
L A EE M+ E G C PDVV+ + +I G K+G M+D G
Sbjct: 92 KGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHG 151
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK-- 162
+ P+VVT N + D L K M++A +L+ MI + PN TYN+L+ G+ W++
Sbjct: 152 IPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAV 211
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---- 209
G R +V +YN+LI+ CK +A + M+ G + DATTY +L
Sbjct: 212 RILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGY 271
Query: 210 --------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M N + + H ++ I K G + EA F + + I
Sbjct: 272 ATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDI 331
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T +IDGLCKIGRL A F ++ + GL+P+++T+ +IHGF G+ +KA L
Sbjct: 332 VTYTTVIDGLCKIGRLDDAMSRFCQMIDD-GLSPNIITFTTLIHGFSMYGKWEKAEELFY 390
Query: 316 DMEETGLEPN 325
+M + G+ P+
Sbjct: 391 EMMDRGIPPD 400
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 90/375 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L ++L PN+VT NS+I GLC + +A + +++ PN T+
Sbjct: 135 GDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTY 194
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N+L A+ + +EM + +P+VVT +ID LCK GF
Sbjct: 195 NSLIHGYLSSGQWTEAVRILKEMSRDGQ---RPNVVTYNMLIDCLCKSGFHAEAREIFNS 251
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G +PD T + + +G + E N + ++M+Q + N T++ + + +
Sbjct: 252 MIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGR 311
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ +Y +I+G CK ++DA+S +M+ +G+ + T+ T
Sbjct: 312 LDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTT 371
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M +PPD ++T ID L+K G V EA K+F
Sbjct: 372 LIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFD------ 425
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
LM G P+VV+YN MIHG+ G+ +
Sbjct: 426 ------------------------------LMPRAGAKPNVVSYNTMIHGYFIAGEVGEV 455
Query: 311 NGLLLDMEETGLEPN 325
LL DM GL+P
Sbjct: 456 MKLLDDMLLIGLKPT 470
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 24/208 (11%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F P++VT+ ++I GLC GR+ +A F ++ PN+ITF TL A
Sbjct: 327 FMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAE 386
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF EM++ G+ PDV T +ID L K+G M G +P+VV+ N M
Sbjct: 387 ELFYEMMDR-GI--PPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMI 443
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
G++ E LL+ M+ + P T+NTL+DG S G + DV + LI+ C
Sbjct: 444 HGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMV--SMGLKPDVDTCKTLIDSCC 501
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYN 207
+D +ED ++L REML + + D T N
Sbjct: 502 EDGRIEDILTLFREMLGKADKTDTITEN 529
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 137/343 (39%), Gaps = 99/343 (28%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72
PN+VT+N LI LC G EA +F + P+ T+ +L LV +N
Sbjct: 224 PNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNV 283
Query: 73 EEMVNEFGV-------------ICK--------------------PDVVTCTNIIDGLCK 99
++++ + G+ CK PD+VT T +IDGLCK
Sbjct: 284 KDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCK 343
Query: 100 DGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M+D G+ P+++T + S GK E+A L M+ R + P+
Sbjct: 344 IGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTI 403
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ ++D K G + +V SYN +I+GY V + + L +ML
Sbjct: 404 FTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 463
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
G++ A T+NTL +DG+ G + +
Sbjct: 464 LIGLKPTAVTFNTL-----------------LDGMVSMGLKPD----------------V 490
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+TC LID C+ GR++ +F ++ T D +T NI +
Sbjct: 491 DTCKTLIDSCCEDGRIEDILTLFREMLGKADKT-DTITENIKL 532
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 174/349 (49%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LG+++ F P++VTF SLI G C R+ EA + ++ P+V+ + T+
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLC 188
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL+LF++M N +G+ +PDVV T++++GLC G M + ++P
Sbjct: 189 KNGHVNYALSLFDQMEN-YGI--RPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
DV+T N + D K+GK +A L MI+ + PN TY +L++GF
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +Y LING+CK + V+DA+ + EM +G+ + TY TL
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL------- 358
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G + G A +VFS + + I T N L+ LC G++K A
Sbjct: 359 ----------IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALM 408
Query: 277 IFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
IF + + G+ P++ TYN+++HG C G+ +KA + DM + ++
Sbjct: 409 IFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
M + DV N C + +M G HD+Y+ N+L+N +C+ A S +M+
Sbjct: 85 MKKFDVVINLCDHLQIM--------GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKL 136
Query: 198 GIRADATTYNTLF------------MAINN------VPPDSHVYTTYIDGLYKNGFVLEA 239
G D T+ +L M++ N + PD +YTT ID L KNG V A
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ +F + N+ + L++GLC GR + A D M + PDV+T+N +I
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDA-DSLLRGMTKRKIKPDVITFNALID 255
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
F KEG+ A L +M + PN
Sbjct: 256 AFVKEGKFLDAEELYNEMIRMSIAPN 281
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 56/273 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ PN+ T+ SLI G C EG + EA ++F + C P+V+ + +L
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFC 328
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ +F EM + G+ + +T T +I G + G M+ +G+ P
Sbjct: 329 KCKKVDDAMKIFYEMSQK-GLT--GNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP 385
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCR-- 165
++ T NV+ L +GK+++A + E M +R+ V PN TYN L+ G + K +
Sbjct: 386 NIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKAL 445
Query: 166 ---HDVYSYNI---------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
D+ + +I G CK V++AV+L + S+G++ + T
Sbjct: 446 MVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVT-------- 497
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I GL++ G EA +F +
Sbjct: 498 ---------YTTMISGLFREGLKHEAHVLFRKM 521
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ + L+N K + + ++LC + G+ D T N L
Sbjct: 71 SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD +T+ I+G + EAM + + + + +ID LCK
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A +F M+N G+ PDVV Y +++G C G+ + A+ LL M + ++P+
Sbjct: 191 GHVNYALSLFDQ-MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPD 246
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 175/377 (46%), Gaps = 53/377 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MG GF G IL + + + + N L+KGLC R+ EA L +++ C P+ +
Sbjct: 103 MGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTV 162
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
++ L A AL L M ++ G C P+VV+ + +I+G +G
Sbjct: 163 SYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLF 222
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+D+G+ PDVVT + D L K + A + + MI PN TYN L+ G+
Sbjct: 223 LEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSI 282
Query: 158 AWW-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W ++G + D Y+Y L+N CK+ +A M+ +GI+ +TY
Sbjct: 283 GKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTY 342
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L M N + PD H++ + K G + +AM +F+ +
Sbjct: 343 GILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ 402
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
H + LID LCK+GR+ A F+ ++ N G+TP++V +N +++G C + +
Sbjct: 403 HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI-NEGVTPNIVVFNSLVYGLCTVDKWE 461
Query: 309 KANGLLLDMEETGLEPN 325
+A L+ +M + G+ PN
Sbjct: 462 RAEELVYEMLDQGICPN 478
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 160/358 (44%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL----- 71
+P+ FN G I +A +F K+ PNV+ + L AL L
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429
Query: 72 --FEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMT 119
F +M+NE GV P++V +++ GLC D + M+DQG+ P+ V N +
Sbjct: 430 VKFNQMINE-GVT--PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 486
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
NL G++ E L+++M V P+ +Y L+ G+ S G
Sbjct: 487 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLS 546
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
+YN L++GYC ++DA L REML +G+ TYNT+ +
Sbjct: 547 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 606
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ D + Y ++GL K+ V EA K+F ++ + L I T +I L K
Sbjct: 607 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 666
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + A D+F + N GL P+VVTY ++ +EG ++ + L ME+ G PN
Sbjct: 667 GGRKEDAMDLFAAIPAN-GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 723
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 154/352 (43%), Gaps = 54/352 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVI 59
+GR V +++ TPN+V FNSL+ GLCT + A L ++ L+ C PN +
Sbjct: 422 LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC-PNAV 480
Query: 60 TFNTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
FNTL N+ +++ GV +PD + T +I G C G
Sbjct: 481 FFNTLICNLCNVGRVMEGRRLIDLMEHVGV--RPDAFSYTPLISGYCLTGRTDEAEKVFD 538
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G+ P VT N + ++++A CL M+++ V P TYNT++ G
Sbjct: 539 GMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTK 598
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + D+Y+YNI++NG CK V++A + + + S+G++ + T
Sbjct: 599 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIIT-- 656
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+T I L K G +AM +F+AI + V + T + + L +
Sbjct: 657 ---------------FTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIE 701
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G L+ +D M+ G P+ N ++ G +A L ++E
Sbjct: 702 EGSLE-EFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 752
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 135/337 (40%), Gaps = 60/337 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
P+ T+ SL+ LC GR EA F + P V T+ L AL ++ F
Sbjct: 302 PDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSF 361
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+++ E G+ PD K G M G+ P+VV + D L
Sbjct: 362 LDLMVENGL--SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 419
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K G++++A MI V PN +N+ L+ G C
Sbjct: 420 CKLGRVDDAEVKFNQMINEGVTPNIVVFNS---------------------LVYGLCTVD 458
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYT 224
E A L EML +GI +A +NTL M V PD+ YT
Sbjct: 459 KWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYT 518
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I G G EA KVF + + T T N L+ G C R+ A+ +F +++
Sbjct: 519 PLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRK 578
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G+TP VVTYN ++HG + + +A L L+M +G
Sbjct: 579 -GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 153/352 (43%), Gaps = 49/352 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++VT+ ++I GLC A +F+++ PN T+N L +++ ++E+V
Sbjct: 232 PDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291
Query: 79 FGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ KPD T ++++ LCK+G M+ +G++P V T ++ +
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYAT 351
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
G + E + L++M++ ++P+ +N +A G +V +
Sbjct: 352 KGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVN 411
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y LI+ CK V+DA +M++EG+ + +N+L +
Sbjct: 412 YGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEML 471
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ P++ + T I L G V+E ++ + + + LI G C GR
Sbjct: 472 DQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTD 531
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A +F M + GL+P VTYN ++HG+C + A L +M G+ P
Sbjct: 532 EAEKVFDG-MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTP 582
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 37/219 (16%)
Query: 143 VNPNTCTYNTLM----------DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAV 188
V PN CTY+ L+ GFA + G R D + N L+ G C + V +A+
Sbjct: 86 VAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAM 145
Query: 189 SLCREMLSE-GIRADATTYNTLFMAINN---------------------VPPDSHVYTTY 226
+ + + E G D +Y L + N PP+ Y+
Sbjct: 146 DVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G + G V + +F + + + T +IDGLCK A +F ++ N G
Sbjct: 206 INGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ TYN +IHG+ G+ ++ +L +M GL+P+
Sbjct: 265 FKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPD 303
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 24/155 (15%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAI------------------------NNVPPD 219
++DA+ L E+L A +N L A+ + V P+
Sbjct: 30 LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPN 89
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y+ I + G + F I + N L+ GLC R+ A D+
Sbjct: 90 LCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLL 149
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
M G PD V+Y I++ G C E + ++A LL
Sbjct: 150 QRMPELGCMPDTVSYTILLKGLCNEKRAEEALELL 184
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 173/345 (50%), Gaps = 61/345 (17%)
Query: 19 FTPNMVTFNSLIKGLC---TEGRILEAARLFKKL--NVFCCDPNVITFNTL--------- 64
F+PN+VT+N+LI G C + G++ A + K++ N C PN ITFNTL
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKIC--PNEITFNTLIDGFCKDEN 288
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
L A N FEEM + KP++VT ++I+GL +G M+ G++P++VT
Sbjct: 289 VLAAKNAFEEMQRQG---LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVT 345
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N + + K ++EA L + + ++D+ PN T+NT++D F +
Sbjct: 346 FNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSML 405
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+G +V +YN LI G C+++NV A L EM + ++AD TYN L
Sbjct: 406 DEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL----------- 454
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
I G K+G +A K+ + N T N L+DG C G LK A +
Sbjct: 455 ------IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKV-RT 507
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G +VVTYN++I GFCK G+ + AN LL +M E GL PN
Sbjct: 508 QMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPN 552
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 169/355 (47%), Gaps = 52/355 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N + + L+ T I A +F+++ + ++ + N L ALV N EM +
Sbjct: 129 NALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVY 188
Query: 80 GVICK----PDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKD 125
+ K P++ T I+GLCK G + G P++VT N + D K
Sbjct: 189 KEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKK 248
Query: 126 ---GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
GKM A+ +L+ M+ + PN T+NTL+DGF +G + ++
Sbjct: 249 GSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNI 308
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN LING + +++A++L +M+ G++ + T+N L
Sbjct: 309 VTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDD 368
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+A ++ P++ + T ID K G + E + +++ + + T NCLI GLC+
Sbjct: 369 IAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQN 428
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A + + M+N L DVVTYNI+I G+CK+G+ KA LL +M G++PN
Sbjct: 429 VRAAKKLLNE-MENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPN 482
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 126/259 (48%), Gaps = 40/259 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +++ PN+VTFN+LI G C + I EA +LF + PN ITF
Sbjct: 322 GKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITF 381
Query: 62 NTL--ALVALNLFEE-------MVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A + EE M++E G+ P+V T +I GLC++
Sbjct: 382 NTMIDAFCKAGMMEEGFALHNSMLDE-GIF--PNVSTYNCLIAGLCRNQNVRAAKKLLNE 438
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M + ++ DVVT N++ KDG+ +A LL M+ V PN TYNTLMDG+
Sbjct: 439 MENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGN 498
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G R +V +YN+LI G+CK +EDA L EML +G+ + TTY+
Sbjct: 499 LKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDV 558
Query: 209 --LFMAINNVPPD--SHVY 223
L M PD H+Y
Sbjct: 559 VRLEMLEKGFIPDIEGHLY 577
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 179/368 (48%), Gaps = 66/368 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P ++ + LI+GLC++ +I EA + + + PNV T+NTL A AL L
Sbjct: 215 PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRL 274
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
+++M+ E G++ PDVVT +IDGLCK G M + + P++ N + D
Sbjct: 275 YQDMLGE-GLV--PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDA 331
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K G + EA L + + +V+P+ TY+ L+ G S+ G +
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+YN LI+G CK+ ++ A+ +C +M G+ + T++TL
Sbjct: 392 SVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYS 451
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M I ++ PD YT IDG K G + EA+K++S + ++ T +CL+DGLCK G
Sbjct: 452 EMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDG 511
Query: 270 RLKIAWDIF--HMLMQNP-------GLTPDV---VTYNIMIHGFCKEGQHQKANGLLLDM 317
++ A ++F + Q P G P + V Y +IHG C++GQ KA L DM
Sbjct: 512 KISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDM 571
Query: 318 EETGLEPN 325
GL+P+
Sbjct: 572 RRYGLQPD 579
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 158/353 (44%), Gaps = 61/353 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK----LNVFCCDPNVITFN 62
F L R+ S FTPN+ + LI LC + EA ++ K L + C+ +
Sbjct: 101 AFSELSRLKSSKFTPNV--YGELIIVLCKMELVEEALSMYHKVGAALTIQACNVLLYVLV 158
Query: 63 TLALVAL--NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L ++EEM++ G+ P V+T +IDG C+ G ++ +G+ P
Sbjct: 159 KTGRFELLWRIYEEMISN-GL--SPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVP 215
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
V+ ++ L D K+EEA + M + V PN TYNTLMD
Sbjct: 216 TVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMD--------------- 260
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
GYCK N + A+ L ++ML EG+ D T+ L M
Sbjct: 261 ------GYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMI 314
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+V P+ VY + ID K G V EAM +F + + + T + LI GLC + R +
Sbjct: 315 KFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTE 374
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +IF M G+ + VTYN +I G CKEG+ KA + M E G+EPN
Sbjct: 375 EAGNIFEK-MTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPN 426
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
N VT+NSLI G C EG++ +A + ++ +PNVITF+TL A+ ++
Sbjct: 391 NSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIY 450
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
EMV + PDVVT T +IDG CK G M +D G+ P+ T++ + D L
Sbjct: 451 SEMVIKS---LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL 507
Query: 123 SKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
KDGK+ +A LE+ ++ + C + A SK + +Y LI+G C+D
Sbjct: 508 CKDGKISDA---LELFTEKIEFQTPRCNVD------AGGSKPSLTNHVAYTALIHGLCQD 558
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
AV L +M G++ PD +Y + GL++ ++L
Sbjct: 559 GQFSKAVKLFSDMRRYGLQ-----------------PDEVIYVVMLRGLFQVKYIL 597
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 185/380 (48%), Gaps = 74/380 (19%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------L 64
++ F N V++ +LI GLC G A ++ + ++ PNV+ ++T L
Sbjct: 75 VIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKL 134
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNI-----IDGLCKDGF-----MMDQGMRPDVVT 114
+ A +L+ +M+ + PDV+T + I G K+ M+ + ++PD+ T
Sbjct: 135 VIDAFDLYSQMLLKR---ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYT 191
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N++ D L K+G+M++A +L VMI++ V+P+ TYN+LMDG+
Sbjct: 192 FNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMA 251
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---- 216
+G DV+SY+++ING CK + V++AV+L +EM S+ + + TY++L ++
Sbjct: 252 RRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIF 311
Query: 217 --------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P D Y + +D L KN V +A+ + + I + I T L+
Sbjct: 312 DAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILV 371
Query: 263 DGLCKIGRLKIAWDIFHML--------------------MQNPGLTPDVVTYNIMIHGFC 302
DGLCK GRLK A +++ +L M++ G TP+ VT+ I+I
Sbjct: 372 DGLCKNGRLKDAQEVYQILLIKGYHLDSLFDKALSLLSKMEDNGCTPNPVTFEILIRALF 431
Query: 303 KEGQHQKANGLLLDMEETGL 322
+ + KA LL +M GL
Sbjct: 432 ENDMNDKAVELLREMIARGL 451
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 39/258 (15%)
Query: 106 QGMRPDVVTLNVMTD------NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
+G++ D+V LN++ + + + K++E + +I + N +Y TL+DG
Sbjct: 37 RGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCK 96
Query: 158 AWWSKGC------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
A ++ + +V Y+ +I CKD+ V DA L +ML + I D T
Sbjct: 97 AGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVIT 156
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YNTL M + N+ PD + + +DGL K G + +A V + +
Sbjct: 157 YNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMI 216
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T N L+DG + + A +F+ M G+TPDV +Y++MI+G CK
Sbjct: 217 KQSVDPDVITYNSLMDGYFLVKQENKATFVFNT-MARRGVTPDVHSYSVMINGLCKTKMV 275
Query: 308 QKANGLLLDMEETGLEPN 325
+A LL +M + PN
Sbjct: 276 DEAVNLLKEMHSKSMAPN 293
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 62/218 (28%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHV-- 222
++ + + K + +SL +M GI+ D N L F + V + V
Sbjct: 8 IFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKE 67
Query: 223 -------------------YTTYIDGLYKNG----------------------------- 234
Y T IDGL K G
Sbjct: 68 TLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIY 127
Query: 235 ------FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGL 287
V++A ++S + + + T N L+ G +GRLK A +F ML++N +
Sbjct: 128 SLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKN--I 185
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+ T+NI++ G CKEG+ +KA +L M + ++P+
Sbjct: 186 KPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPD 223
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 187/411 (45%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG----------------------- 37
+G S F + G+IL F PN +TFN+LIKGLC +G
Sbjct: 118 LGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVS 177
Query: 38 ------------RILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNLFEEMV 76
RI A +L K+++ PN + +N + LV A +L+ +MV
Sbjct: 178 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 237
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
+ PD TC ++I G C G M+ + + P + T +++ D K+G
Sbjct: 238 AKR---ISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEG 294
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
K++EA +L V +++D+ + TYN+LMDG+ + S+G +V SY
Sbjct: 295 KVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYT 354
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---------------- 216
+ING CK + V++AV+L EM I + TYN+L + +
Sbjct: 355 TMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDR 414
Query: 217 --PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PP+ Y + +D L KN V +A+ + + + + + T LI GLC+ G+L+ A
Sbjct: 415 GQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDA 474
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L+ G DV TY +MI GFC +G A LL ME+ G PN
Sbjct: 475 QKVFEDLLVK-GYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPN 524
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 162/389 (41%), Gaps = 84/389 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
TP ++ FN ++ L A L +++ + + TFN L L L +
Sbjct: 67 TPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFS 126
Query: 78 EFGVICK----PDVVTCTNIIDGLC----------------KDGFMMDQG---------- 107
FG I K P+ +T +I GLC GF +DQ
Sbjct: 127 VFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLC 186
Query: 108 -------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
++P+ V N++ DN+ K + +A L M+ + ++P+
Sbjct: 187 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDF 246
Query: 149 TYNTLMDGFAWWSK-----GCRHD---------VYSYNILINGYCKDRNVEDAVSLCREM 194
T N+L+ GF + G H +Y+++IL++ +CK+ V++A +
Sbjct: 247 TCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVT 306
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
+ + I D TYN+L MA V + YTT I+GL K V
Sbjct: 307 MKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMV 366
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+ +F + K + + T N LIDGL K+G++ + M + G P+++TYN
Sbjct: 367 DEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDE-MHDRGQPPNIITYNS 425
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ CK KA LL ++++ G+ P+
Sbjct: 426 ILDALCKNHHVDKAIALLTNLKDQGIRPD 454
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 30/242 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++LG + ++VT+NSL+ G C I +A +F + NV ++
Sbjct: 294 GKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSY 353
Query: 62 NTL--ALVALNLFEEMVNEFGVI-CK---PDVVTCTNIIDGLCKDGF----------MMD 105
T+ L + + +E VN F + C+ P+VVT ++IDGL K G M D
Sbjct: 354 TTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHD 413
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G P+++T N + D L K+ +++A LL + + + P+ TY L+ G K
Sbjct: 414 RGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLED 473
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G DVY+Y ++I G+C + A++L +M G +A TY + +
Sbjct: 474 AQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVIL 533
Query: 212 AI 213
++
Sbjct: 534 SL 535
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 33/216 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N+ ++ ++I GLC + EA LF+++ PNV+T+N+L L ++ ++V
Sbjct: 349 NVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLV 408
Query: 77 NEFGVICKP-DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+E +P +++T +I+D LCK+ + DQG+RPD+ T V+ L +
Sbjct: 409 DEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQS 468
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVYSY 171
GK+E+A + E ++ + N + TY ++ GF A SK GC + +Y
Sbjct: 469 GKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTY 528
Query: 172 NILI-NGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
I+I + + KD N + A L REM++ G+ D +Y
Sbjct: 529 EIVILSLFEKDEN-DMAEKLLREMIARGL-LDEKSY 562
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 185/389 (47%), Gaps = 85/389 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD--PNVITFNTL--ALVALNLFEEM- 75
PN+VT++ LI GLC GRI EA L +++ CD PN+IT+N+ L ++ E
Sbjct: 284 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 343
Query: 76 -----VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+ + + PD VT + +IDGLCK G M+ G P+V+T N + +
Sbjct: 344 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K KME A+ ++E M+ + V P+ TY+ L+D F S+GC
Sbjct: 404 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLF-------------MA 212
+V ++N +I+G CK +A + +M L G+ D TY TL
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523
Query: 213 INNVP-PDSHVYTTYIDGLYKNGFVLEAMKVFSAI----------------------GNH 249
++ +P PD++ + I+GL K G V A++V++ + GN
Sbjct: 524 LDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNF 583
Query: 250 KCVLT-------------IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+ + T LIDGLCK G+++ A DI LM N G+ P+VVTYN
Sbjct: 584 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNA 642
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HG CK G+ ++A L +M +G P+
Sbjct: 643 LVHGLCKSGRIEEACQFLEEMVSSGCVPD 671
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 169/343 (49%), Gaps = 60/343 (17%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD--PNVITFNTL--ALVALNLFE 73
C PN+VT++ LI GLC GRI EA L +++ CD PN+IT+N+ L ++
Sbjct: 775 CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834
Query: 74 EM------VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
E + + + PD VT + +IDGLCK G M+ G P+VVT NV
Sbjct: 835 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + L K KME A+ ++E M+ + V P+ TY+ L+D F S+G
Sbjct: 895 LMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRG 954
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSHV 222
C +V ++N +I+G CK +A + +M L G+ D TY TL
Sbjct: 955 CTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTL------------- 1001
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDGL++ G+ +A + A+ + NC I+GL K+G + A H ++
Sbjct: 1002 ----IDGLFRTGWAGQAEVLLDAMPDPDTY----AFNCCINGLSKLGDVSRA---LHRML 1050
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L PD VT+NI+I G CK G ++A+ L +M L+P+
Sbjct: 1051 ELE-LVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 1092
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 179/374 (47%), Gaps = 60/374 (16%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---- 61
G L ++ P++VT+N+LI LC G + EA RL ++ C PNV+T+
Sbjct: 234 AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLI 293
Query: 62 NTLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
N L V A L +EM + + P+++T + +DGLCK + D
Sbjct: 294 NGLCKVGRIDEARELIQEMTRKSCDVL-PNIITYNSFLDGLCKQSMTAEACELMRSLRDG 352
Query: 107 GMR--PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+R PD VT + + D L K G+++EA + + MI PN TYN L++G
Sbjct: 353 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKME 412
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ KG DV +Y++L++ +CK V++A+ L M S G + T+N++
Sbjct: 413 RAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII 472
Query: 211 ------------------MAINN-VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
MA+ + + PD Y T IDGL++ G +A + A+ +
Sbjct: 473 DGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDT 532
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
NC I+GL K+G + A +++ +++ L PD VT+NI+I G CK G ++A+
Sbjct: 533 Y----AFNCCINGLSKLGDVSRALQVYNRMLELE-LVPDKVTFNILIAGACKAGNFEQAS 587
Query: 312 GLLLDMEETGLEPN 325
L +M L+P+
Sbjct: 588 ALFEEMVAKNLQPD 601
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 172/365 (47%), Gaps = 62/365 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+++TF +LI GLC G++ A + + PNV+T+N L A
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
EEMV+ C PD +T +++ LC+ D G PD VT N++
Sbjct: 658 QFLEEMVSSG---CVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------------AWWSK 162
D L K G+ E+A +LE M+ + +P+ TYNTL+D + S+
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG--IRADATTYNT------------ 208
C +V +Y++LING CK +++A L +EM+ + + + TYN+
Sbjct: 775 CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834
Query: 209 ----LFMAINN----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
L ++ + V PD+ ++T IDGL K G EA VF + V + T N
Sbjct: 835 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L++GLCK +++ A + M + G+TPDV+TY++++ FCK +A LL M
Sbjct: 895 LMNGLCKTDKMERAHAMIES-MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASR 953
Query: 321 GLEPN 325
G PN
Sbjct: 954 GCTPN 958
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 171/376 (45%), Gaps = 61/376 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ S P+ +T+ SL+ LC R +A +L +L F DP+ +T+
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 710
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM-------D 105
N L A+ + EEMV G PDVVT +ID LCK G + D
Sbjct: 711 NILVDGLWKSGQTEQAITVLEEMV---GKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGD 767
Query: 106 QGMR------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGF 157
R P+VVT +V+ + L K G+++EA L++ M+++ DV PN TYN+ +DG
Sbjct: 768 MSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGL 827
Query: 158 ---AWWSKGCR-------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
+ ++ C D +++ LI+G CK ++A ++ +M++ G
Sbjct: 828 CKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVP 887
Query: 202 DATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+ TYN L M V PD Y+ +D K V EA+++
Sbjct: 888 NVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELL 947
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + C + T N +IDGLCK + A+ +F + GL PD +TY +I G +
Sbjct: 948 HGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFR 1007
Query: 304 EGQHQKANGLLLDMEE 319
G +A LL M +
Sbjct: 1008 TGWAGQAEVLLDAMPD 1023
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 160/359 (44%), Gaps = 60/359 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
+ PN++T+N+L+ GLC ++ A + + + P+VIT++ L AL
Sbjct: 391 YVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 450
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----------DGFMMDQGMRPDVVTLNVM 118
L M + C P+VVT +IIDGLCK D + G+ PD +T +
Sbjct: 451 ELLHGMASRG---CTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTL 507
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------------ 166
D L + G+ +A LL+ M +P+T +N ++G + R
Sbjct: 508 IDGLFRTGRAGQAEALLDAM----PDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELEL 563
Query: 167 --DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------- 209
D ++NILI G CK N E A +L EM+++ ++ D T+ L
Sbjct: 564 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARD 623
Query: 210 ---FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M VPP+ Y + GL K+G + EA + + + CV T L+ LC
Sbjct: 624 ILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALC 683
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ R A + L ++ G PD VTYNI++ G K GQ ++A +L +M G P+
Sbjct: 684 RASRTDDALQLVSEL-KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPD 741
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 159/350 (45%), Gaps = 59/350 (16%)
Query: 26 FNSLIKGLCTEGRILEAARLFK-KLNVFCCDPNVITFNTLA---------LVALNLFEEM 75
+N +++ LC G A +F+ ++ P ++T+NT+ + LFEE+
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242
Query: 76 VNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKD 125
V PDVVT +ID LCK G M + P+VVT +V+ + L K
Sbjct: 243 VERGH---HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299
Query: 126 GKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWS---KGCR-------------HD 167
G+++EA L++ M ++ DV PN TYN+ +DG S + C D
Sbjct: 300 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 359
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+++ LI+G CK +++A S+ +M++ G + TYN L
Sbjct: 360 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 419
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD Y+ +D K V EA+++ + + C + T N +IDGLCK
Sbjct: 420 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 479
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
R A+ +F + GL PD +TY +I G + G+ +A LL M +
Sbjct: 480 RSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD 529
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 167/391 (42%), Gaps = 90/391 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----------FCC--------------- 54
TPN+VTFNS+I GLC R EA ++F + + +C
Sbjct: 462 TPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAE 521
Query: 55 -------DPNVITFN-------TLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC 98
DP+ FN L V AL ++ M+ E ++ PD VT +I G C
Sbjct: 522 ALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRML-ELELV--PDKVTFNILIAGAC 578
Query: 99 KDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G M+ + ++PDV+T + D L K G++E A +L++M V PN
Sbjct: 579 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 638
Query: 149 TYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYN L+ G S GC D +Y L+ C+ +DA+ L E+
Sbjct: 639 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
S G D TYN L M PD Y T ID L K G +
Sbjct: 699 KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDL 758
Query: 237 LEAMKV---FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GLTPDVV 292
EA ++ S+ + CV + T + LI+GLCK+GR+ A ++ +M+ + P+++
Sbjct: 759 EEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNII 818
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
TYN + G CK+ +A L+ + + L
Sbjct: 819 TYNSFLDGLCKQSMMAEACELMRSLRDGSLR 849
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 153/376 (40%), Gaps = 87/376 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----------- 67
F + +FN + L G +A LF+ C PN T++TL
Sbjct: 107 FKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERT 166
Query: 68 --------------------------------ALNLFEEMVNEFGVICKPDVVTCTNIID 95
AL +F + GV P +VT II+
Sbjct: 167 LGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGV--APTIVTYNTIIN 224
Query: 96 GLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
GLCK ++++G PDVVT N + D+L K G +EEA L M R P
Sbjct: 225 GLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVP 284
Query: 146 NTCTYNTLMDGF--------------AWWSKGCR--HDVYSYNILINGYCKDRNVEDAVS 189
N TY+ L++G K C ++ +YN ++G CK +A
Sbjct: 285 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 344
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L R + +R V PD+ ++T IDGL K G + EA VF +
Sbjct: 345 LMRSLRDGSLR---------------VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG 389
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + T N L++GLCK +++ A + M + G+TPDV+TY++++ FCK + +
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIES-MVDKGVTPDVITYSVLVDAFCKASRVDE 448
Query: 310 ANGLLLDMEETGLEPN 325
A LL M G PN
Sbjct: 449 ALELLHGMASRGCTPN 464
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 105/250 (42%), Gaps = 33/250 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------- 155
G + + + N + L K G +A L + PN TY+TL+
Sbjct: 106 GFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVER 165
Query: 156 --GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR-EMLSEGIRADATTYNTLFMA 212
GF + V YNI++ C+ A+ + R EM +G+ TYNT+
Sbjct: 166 TLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIING 225
Query: 213 I------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ PD Y T ID L K G + EA ++ + + CV
Sbjct: 226 LCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T + LI+GLCK+GR+ A ++ M ++ + P+++TYN + G CK+ +A L
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACEL 345
Query: 314 LLDMEETGLE 323
+ + + L
Sbjct: 346 MRSLRDGSLR 355
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 157 FAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
+ W + G +H ++S+N +N K + A+ L R L R + TY+TL A
Sbjct: 98 YDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATY 157
Query: 215 NVPPDSHV-----------------YTTYIDGLYKNGFVLEAMKVFSA-IGNHKCVLTIE 256
D Y + L + G A+++F + TI
Sbjct: 158 KAGGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIV 217
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N +I+GLCK L ++F L++ G PDVVTYN +I CK G ++A L D
Sbjct: 218 TYNTIINGLCKSNELGAGMELFEELVER-GHHPDVVTYNTLIDSLCKAGDLEEARRLHGD 276
Query: 317 MEETGLEPN 325
M PN
Sbjct: 277 MSSRSCVPN 285
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 49/185 (26%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
TP+++T++ L+ C + EA L + C PNV+TFN++ + A
Sbjct: 921 TPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQ 980
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------------------------- 102
+F++M + G+ PD +T +IDGL + G+
Sbjct: 981 MFDDMTLKHGL--APDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSK 1038
Query: 103 ----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
M++ + PD VT N++ K G E+A+ L E M+ +++ P+ T+
Sbjct: 1039 LGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 1098
Query: 153 LMDGF 157
L+DG
Sbjct: 1099 LIDGL 1103
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 29/91 (31%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L R+L P+ VTFN LI G C G +A+ LF++ +VA N
Sbjct: 1046 LHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEE-----------------MVAKN 1088
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
L +PDV+T +IDGLCK G
Sbjct: 1089 L------------QPDVMTFGALIDGLCKAG 1107
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 179/367 (48%), Gaps = 58/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
++ R+L+ F P+ +T+ L+ GLC GR+ A LF ++ P ++ FNTL V
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFV 364
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A + +MV +G++ PDV T ++I G K+G M ++G +P
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIV--PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V + ++ D K GK++EA +L M + PNT +N L+ F
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KGC+ DVY++N LI+G C+ ++ A+ L R+M+SEG+ A+ TYNTL
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M P D Y + I GL + G V +A +F + + +C
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+GLC+ G ++ A + F M G TPD+VT+N +I+G C+ G+ + + ++
Sbjct: 603 NILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
Query: 319 ETGLEPN 325
G+ P+
Sbjct: 662 AEGIPPD 668
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 162/326 (49%), Gaps = 49/326 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN V + +LI L R+ EA +L +++ + C P+ TFN + L +N +M
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
VN + PD +T +++GLCK G + + +P++V N + G++
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRL 369
Query: 129 EEANCLLEVMI-QRDVNPNTCTYNTLMDGFAW---------------WSKGCRHDVYSYN 172
++A +L M+ + P+ CTYN+L+ G+ W +KGC+ +VYSY
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGY-WKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
IL++G+CK +++A ++ EM ++G++ + +N L I K
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL-----------------ISAFCK 471
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA-WDIFHMLMQNPGLTPDV 291
+ EA+++F + C + T N LI GLC++ +K A W + M+ + G+ +
Sbjct: 472 EHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE--GVVANT 529
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
VTYN +I+ F + G+ ++A L+ +M
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEM 555
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 36/242 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + +L + PN V FN LI C E RI EA +F+++ C P+V T
Sbjct: 437 LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
FN+L AL L +M++E GV+ + VT +I+ + G
Sbjct: 497 FNSLISGLCEVDEIKHALWLLRDMISE-GVVA--NTVTYNTLINAFLRRGEIKEARKLVN 553
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ QG D +T N + L + G++++A L E M++ P+ + N L++G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G D+ ++N LING C+ +ED +++ R++ +EGI D T+N
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673
Query: 208 TL 209
TL
Sbjct: 674 TL 675
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 54/356 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNV 58
A+G F + R+L+ +V F S+++ G + RL ++ NV+ C+P
Sbjct: 123 ANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTF 182
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
++N + E +V+ C + + D M+ + + P + T V+
Sbjct: 183 KSYNVV-------LEILVSG----------NCHKVAANVFYD--MLSRKIPPTLFTFGVV 223
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
+++ A LL M + PN+ Y TL+ + ++ GC
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV-------- 216
D ++N +I G CK + +A + ML G D TY L + +
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343
Query: 217 ------PPDSHVYTTYIDGLYKNGFVLEAMKVFS-AIGNHKCVLTIETCNCLIDGLCKIG 269
P+ ++ T I G +G + +A V S + ++ V + T N LI G K G
Sbjct: 344 LFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A ++ H M+N G P+V +Y I++ GFCK G+ +A +L +M GL+PN
Sbjct: 404 LVGLALEVLHD-MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 45/224 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP-NVITFNTLAL-- 66
LL ++ N VT+N+LI G I EA +L ++ VF P + IT+N+L
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM-VFQGSPLDEITYNSLIKGL 574
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A +LFE+M+ + P ++C +I+GLC+ G M+ +G
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHA---PSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PD+VT N + + L + G++E+ + + + P+T T+NTLM +W KG
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM---SWLCKG------ 682
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G+ V DA L E + +G + T++ L +I
Sbjct: 683 -------GF-----VYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 151 NTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+T M+ F+W G RH Y +LI + + L +M EGI +
Sbjct: 92 STSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGI----VFKES 147
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCK 267
LF++I + K GF + ++ + N + C T ++ N +++ L
Sbjct: 148 LFISI-------------MRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVS 194
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+A ++F+ ++ + P + T+ +++ FC + A LL DM + G PN
Sbjct: 195 GNCHKVAANVFYDMLSRK-IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPN 251
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 168/354 (47%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+VT+ +LI ++ EA +L +++ C PN++T+N L AL L++ +
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 236
Query: 79 FGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ + P+V+T +++DG CK G M+ +GMRP+VVT + + D L K
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 296
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
K EA +LE M R V P+ TY+ L+ G K GC DV
Sbjct: 297 SQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 356
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y+ +I+ +CK + +A +EM + D TYNT+ +
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQ 416
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+V PD Y+T I+GL K+ ++EA K+ + C + T +IDGLCK GRL
Sbjct: 417 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 476
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + M+ G P+VVTY +I G CK + +A ++ +M G PN
Sbjct: 477 EEAEYLLQG-MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 160/357 (44%), Gaps = 56/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL + + F P+ T +I + G + A L CDPNV+T+
Sbjct: 126 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTY 182
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A+ L EEM E G C P++VT ++D LCK
Sbjct: 183 TALIAAFARAKKLEEAMKLLEEM-RERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKK 239
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M++ G P+V+T N + D K G +++A LL +M+ + + PN TY+ L+DG
Sbjct: 240 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 299
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D ++Y+ LI+G CK +E+A + R M G
Sbjct: 300 FLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG---------- 349
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD VY++ I K+G +LEA K + + + T N +IDGLCK+
Sbjct: 350 -------CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 402
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A I + ++ + PDVVTY+ +I+G CK +A LL M + G P+
Sbjct: 403 GKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 459
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 157/343 (45%), Gaps = 49/343 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LLG ++ PN+VT+++LI GLC + LEA + +++ P+ T++ L L
Sbjct: 271 LLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLC 330
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PDVV 113
+ EE + G C PDVV ++II CK G +++ Q MR PDVV
Sbjct: 331 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 390
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGF--------------A 158
T N + D L K GK+ EA +LE M + DV P+ TY+T+++G
Sbjct: 391 TYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 450
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
GC DV +Y +I+G CK +E+A L + M G P
Sbjct: 451 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG-----------------CAP 493
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ YTT I GL K V EA +V + N C + T N +++GLC GR+K A +
Sbjct: 494 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 553
Query: 279 HMLMQNPG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+ +PD TY +++ Q+A LL M+ T
Sbjct: 554 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKST 596
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 159/352 (45%), Gaps = 54/352 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F+ ++NSL++ L + EA LF+ + C+P+V ++N + AL
Sbjct: 73 FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAAL 132
Query: 70 NLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGFM---MDQ----GMRPDVVTLNVMTDN 121
L EEM + F PD T T II + G + MD G P+VVT +
Sbjct: 133 ELLEEMKSAGFA----PDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAA 188
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
++ K+EEA LLE M +R PN TYN L+D S G +
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 248
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V ++N L++G+CK NV+DA L M+++G+R + TY+ L
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD+ Y+ I GL K + EA ++ + C + + +I CK G
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+L A M+ +PDVVTYN +I G CK G+ +A +L M+E+G
Sbjct: 369 KLLEAQKTLQE-MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESG 419
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 86/222 (38%), Gaps = 54/222 (24%)
Query: 157 FAWWSK---GCRHDVYSY-----------------------------------NILINGY 178
F W G H +S+ NI+I+G+
Sbjct: 63 FRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGF 122
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---------------PPDSHVY 223
C ++ A+ L EM S G DA T+ + A+ N P+ Y
Sbjct: 123 CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 182
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I + + EAMK+ + C + T N L+D LCK+ + A D+ +++
Sbjct: 183 TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 242
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P+V+T+N ++ GFCK G A LL M G+ PN
Sbjct: 243 G-GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + PN+VT+ +LI GLC ++ EA R+ +++ C PN++T+
Sbjct: 474 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 533
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
NT+ A L + M + C PD T I++ L
Sbjct: 534 NTMVNGLCVSGRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNAL 577
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 42/338 (12%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF +L+ GLC EGR++EA L ++ PN IT+ T+ + ALNL
Sbjct: 79 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M E I KPDVV + IIDGL KDG M D+G+ PD+VT + M +
Sbjct: 139 LRKM-EELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
GK EA LL+ M+ R ++P+ T++ L++ S G +
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V + N L++G C ++DA+ + + M + DAT A N V PD Y I
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATH------AFNGVEPDVQTYNILI 310
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G LEA +++ + + V T + +I+GLCK RL A +F M +
Sbjct: 311 SGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS-MGSKSF 369
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P++VT+N +I G+CK G L +M G+ N
Sbjct: 370 SPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 155/349 (44%), Gaps = 70/349 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++ +FN LIK C+ ++ A F KL P ++TFNTL L + E ++ F
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
+CKP+VVT T +++GLC ++G++ EA LL+ M+
Sbjct: 74 HQMCKPNVVTFTTLMNGLC-------------------------REGRVVEAVALLDRMV 108
Query: 140 QRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNILINGYCKDRNV 184
+ + PN TY T++DG + DV Y+ +I+G KD
Sbjct: 109 EDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRH 168
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
DA +L EM +GI D TY+ + M + + PD ++
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN-- 284
I+ L K G + A + + + + TCN L+DGLC G+LK A ++F + ++
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288
Query: 285 --------PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 51/268 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P++VT++ +I G C+ G+ EA RL +++ V P+V+TF+ L ALV A +L
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---------------------QGMRP 110
+EM++ +C P+VVTC ++DGLC G + D G+ P
Sbjct: 245 LQEMISSG--VC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
DV T N++ L +GK EA L E M R + P+T TY+++++G
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAI 213
+ SK ++ ++N LI GYCK V+D + L EM GI A+A TY TL F +
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV 421
Query: 214 NNVPPDSHVYTTYI-DGLYKNGFVLEAM 240
N+ ++ I G+Y + + M
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTITIRNM 449
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P+ VT++S+I GLC + R+ EA ++F + PN++TFNTL +V L L
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM G++ + +T +I G K G M+ G+ PD +T+ M
Sbjct: 396 FCEM-GRRGIVA--NAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452
Query: 122 LSKDGKMEEANCLLE 136
L +++ A +LE
Sbjct: 453 LWSKEELKRALAMLE 467
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F+PN+VTFN+LI G C G + + LF ++ N IT+ TL +L
Sbjct: 369 FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL 97
++F+EM++ GV PD +T N++ GL
Sbjct: 429 DIFQEMISS-GVY--PDTITIRNMLTGL 453
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 164/338 (48%), Gaps = 42/338 (12%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF +L+ GLC EGR++EA L ++ PN IT+ T+ + ALNL
Sbjct: 79 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 138
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M E I KPDVV + IIDGL KDG M D+G+ PD+VT + M +
Sbjct: 139 LRKM-EELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
GK EA LL+ M+ R ++P+ T++ L++ S G +
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V + N L++G C ++DA+ + + M + DAT A N V PD Y I
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATH------AFNGVEPDVQTYNILI 310
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G LEA +++ + + V T + +I+GLCK RL A +F M +
Sbjct: 311 SGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDS-MGSKSF 369
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P++VT+N +I G+CK G L +M G+ N
Sbjct: 370 SPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVAN 407
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 155/349 (44%), Gaps = 70/349 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++ +FN LIK C+ ++ A F KL P ++TFNTL L + E ++ F
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
+CKP+VVT T +++GLC ++G++ EA LL+ M+
Sbjct: 74 HQMCKPNVVTFTTLMNGLC-------------------------REGRVVEAVALLDRMV 108
Query: 140 QRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNILINGYCKDRNV 184
+ + PN TY T++DG + DV Y+ +I+G KD
Sbjct: 109 EDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRH 168
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
DA +L EM +GI D TY+ + M + + PD ++
Sbjct: 169 TDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGL 228
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN-- 284
I+ L K G + A + + + + TCN L+DGLC G+LK A ++F + ++
Sbjct: 229 INALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMM 288
Query: 285 --------PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYNI+I G EG+ +A L +M G+ P+
Sbjct: 289 DIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 132/268 (49%), Gaps = 51/268 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P++VT++ +I G C+ G+ EA RL +++ V P+V+TF+ L ALV A +L
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDL 244
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---------------------QGMRP 110
+EM++ +C P+VVTC ++DGLC G + D G+ P
Sbjct: 245 LQEMISSG--VC-PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
DV T N++ L +GK EA L E M R + P+T TY+++++G
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAI 213
+ SK ++ ++N LI GYCK V+D + L EM GI A+A TY TL F +
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKV 421
Query: 214 NNVPPDSHVYTTYI-DGLYKNGFVLEAM 240
N+ ++ I G+Y + + M
Sbjct: 422 GNINGSLDIFQEMISSGVYPDTITIRNM 449
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P+ VT++S+I GLC + R+ EA ++F + PN++TFNTL +V L L
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM G++ + +T +I G K G M+ G+ PD +T+ M
Sbjct: 396 FCEM-GRRGIVA--NAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452
Query: 122 LSKDGKMEEANCLLE 136
L ++++A +LE
Sbjct: 453 LWSKEELKKALAMLE 467
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F+PN+VTFN+LI G C G + + LF ++ N IT+ TL +L
Sbjct: 369 FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL 428
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL 97
++F+EM++ GV PD +T N++ GL
Sbjct: 429 DIFQEMISS-GVY--PDTITIRNMLTGL 453
>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 525
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 178/403 (44%), Gaps = 85/403 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
GF +LG + P +VTF +LI GLC EG + AAR L + N T T+
Sbjct: 61 GFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIIN 120
Query: 66 ---------------------------LVALNLFEEMVNEFGVIC--------------K 84
L+A + + + + G++C +
Sbjct: 121 GLCKVGDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQ 180
Query: 85 PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD+V ++I GLC G MM +G+ P+V T NV+ DN K+GK+ A +
Sbjct: 181 PDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTI 240
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCK 180
+ M+ V P+ TYN+++ G S KG +V +Y+ LI+G+CK
Sbjct: 241 MCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCK 300
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
RN+ A+ + EM++ G+ D T++TL M ++ P+
Sbjct: 301 TRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQT 360
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+DGL+K F EA+ +F + L I T N ++DG+C G+ A ++F L
Sbjct: 361 CAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARELFSCL- 419
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ DVV Y MI G CKEG A LL+ MEE G PN
Sbjct: 420 PSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPN 462
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 151/343 (44%), Gaps = 61/343 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LLG ++ PN+ TFN L+ C EG+I A + + +P+V+T+
Sbjct: 197 GRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVHVGVEPDVVTY 256
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ 106
N++ A+ +FE M+++ G++ P+VVT +++I G CK F++D+
Sbjct: 257 NSVISGHCLLSQMNDAVKVFELMIHK-GLL--PNVVTYSSLIHGWCKTRNINKAIFVLDE 313
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G+ DVVT + + K G+ E A L M + PN T ++DG
Sbjct: 314 MVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLF---- 369
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
K + +A+SL R+M + + TYN +
Sbjct: 370 -----------------KCQFHSEAISLFRKMEKMNLELNIVTYNIV------------- 399
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+DG+ G +A ++FS + + + + +I GLCK G L A D+ M M
Sbjct: 400 ----LDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLL-MKM 454
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G P+ TYN+++ G + ++ L+ M+ GL +
Sbjct: 455 EENGCPPNEFTYNVLVRGLLQRYDISRSTKYLMLMKGKGLSAD 497
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 104/252 (41%), Gaps = 48/252 (19%)
Query: 84 KPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KPDV T T +I+ LC G M G+ P VVT + + L +G + A
Sbjct: 39 KPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAAR 98
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
+ + N+ Y++ +ING CK + A+S
Sbjct: 99 FADSLEDMGYESNS---------------------YTHGTIINGLCKVGDTAGAISYL-- 135
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
E I ++ L Y+T +D L K+G + A+ FS +
Sbjct: 136 ---EKIEGRNRGFDLLI-----------AYSTIMDSLCKDGMLCLALNFFSGMTCKGIQP 181
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N LI GLC GR A + +M+ G+ P+V T+N+++ FCKEG+ +A +
Sbjct: 182 DLVAYNSLIHGLCSFGRWNEATTLLGNMMRK-GIMPNVQTFNVLVDNFCKEGKISRAKTI 240
Query: 314 LLDMEETGLEPN 325
+ M G+EP+
Sbjct: 241 MCFMVHVGVEPD 252
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 20/185 (10%)
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNV 216
+S G + DV++ I+IN C ++ S+ M G+ T+ TL A NV
Sbjct: 34 YSLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNV 93
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNC 260
+S+ + T I+GL K G A+ I G ++ + +
Sbjct: 94 GAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLLIAYST 153
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
++D LCK G L +A + F M G+ PD+V YN +IHG C G+ +A LL +M
Sbjct: 154 IMDSLCKDGMLCLALNFFSG-MTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRK 212
Query: 321 GLEPN 325
G+ PN
Sbjct: 213 GIMPN 217
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 49/210 (23%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT------------FNTLALVAL 69
++VT+++LI G C GR A LF ++ PN+ T F++ A+
Sbjct: 322 DVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLF 381
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
E+M E ++VT ++DG+C G D +G++ DVV M
Sbjct: 382 RKMEKMNLEL------NIVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMI 435
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L K+G +++A LL M + PN T YN+L+ G
Sbjct: 436 KGLCKEGLLDDAEDLLMKMEENGCPPNEFT---------------------YNVLVRGLL 474
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ ++ + M +G+ ADATT L
Sbjct: 475 QRYDISRSTKYLMLMKGKGLSADATTTELL 504
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 12 GRILMSCFTP-----NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
R L SC ++V + ++IKGLC EG + +A L K+ C PN T+N L
Sbjct: 412 ARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVR 471
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
G++ + D+ T + M +G+ D T ++ S +
Sbjct: 472 -------------GLLQRYDISRSTKYL------MLMKGKGLSADATTTELLISYFSAN- 511
Query: 127 KMEEANCLLEVMIQRDV 143
+ N L+V +Q+ V
Sbjct: 512 ---KENSALQVFLQKFV 525
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 170/365 (46%), Gaps = 59/365 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F +L + + F P + + L + C GR+ +A +F+ + P+ I
Sbjct: 173 MNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIP----SPDAIA 228
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N + AL +EM NE V PDV T +IDGLCK
Sbjct: 229 YNAIIHGHCRKNDCDGALEFLKEM-NERKV--APDVFTYNILIDGLCKASKTDKASEMLH 285
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PD VT N + D L K GK E A+ LL VM +R+ P+ CTYNTL+ G
Sbjct: 286 EMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 345
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ S G DV +Y+IL +G CK +++A L +EM +G + TYN
Sbjct: 346 NVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYN 405
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL + + PD YT +DGL K G + +A+K+ +
Sbjct: 406 TLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKR 465
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C ++ T L++GLC+ GR+ A IF M + T D + Y +++G+CK + ++
Sbjct: 466 GCTPSVITYTALMEGLCRTGRVDEAHHIFKE-MVSKDCTADALAYVSLVNGYCKSSRTKE 524
Query: 310 ANGLL 314
A ++
Sbjct: 525 AQKVV 529
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 162/343 (47%), Gaps = 44/343 (12%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN--TLAL 66
+ R+L + + P+ T++ +IK LC +I +A + K V P V + T A
Sbjct: 146 AMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQGMRPDVVTLN 116
++ + F I PD + II G C+ DG M ++ + PDV T N
Sbjct: 206 CKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYN 265
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------- 162
++ D L K K ++A+ +L M+ R V P+T T+N++MDG K
Sbjct: 266 ILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAER 325
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
CR +YN LI+G CK +NV+ A L E +S G D TY+ L
Sbjct: 326 NCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSIL------------- 372
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
DGL K G + EA ++ + C + T N LIDGLCK + + A+++ L+
Sbjct: 373 ----ADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLV 428
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PDVVTY I++ G CKEG+ KA ++ M + G P+
Sbjct: 429 SS-GFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 470
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 173/399 (43%), Gaps = 86/399 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + S F P++VT++ L GLC GRI EA L K+++ C PN++T+NTL
Sbjct: 353 LVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLC 412
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A L E +V+ V PDVVT T I+DGLCK+G M+ +G P
Sbjct: 413 KASKTEKAYELLESLVSSGFV---PDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTP 469
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD-----------VN--------------- 144
V+T + + L + G+++EA+ + + M+ +D VN
Sbjct: 470 SVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 529
Query: 145 ------PNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
P YN LMDG+ + GC ++ +YNI+++G CK V
Sbjct: 530 DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKV 589
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A M S G D +YN + M +PPD+ Y T
Sbjct: 590 DEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ K +A+ + + T N LI GL + RL A+++ H +++N
Sbjct: 650 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYN +I CKEG ++A L+ M G+E N
Sbjct: 710 VVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 748
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 160/366 (43%), Gaps = 88/366 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL------------ 49
GR ++ +L TP+++T+ +L++GLC GR+ EA +FK++
Sbjct: 450 GRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 509
Query: 50 ----NVFCCD----------------PNVITFNTL--ALVALNLFEEMVNEFGVI----C 83
N +C P + +N L +E+ N F + C
Sbjct: 510 VSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGC 569
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
P++ T ++DGLCK G M G PDVV+ N++ D L K K +EA
Sbjct: 570 VPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQ 629
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
+L+ MIQ + P+ TYNTLM F CK+ +DAV + +
Sbjct: 630 VLDQMIQAGIPPDAVTYNTLMAQF---------------------CKEERFDDAVGILKN 668
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M+ G+ D TYNTL I GL + + +A ++ + + CV+
Sbjct: 669 MIKAGVDPDNVTYNTL-----------------ISGLSQTNRLGDAYELMHEMLRNGCVV 711
Query: 254 TI-ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T N +ID LCK G LK A + M G+ + VTYNI I CKEG+ +A+
Sbjct: 712 SACTTYNTIIDRLCKEGCLKQALLLMDH-MTGHGVEANTVTYNIFIDRLCKEGRLDEASS 770
Query: 313 LLLDME 318
LL +M+
Sbjct: 771 LLSEMD 776
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 166/391 (42%), Gaps = 93/391 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
TP + +N+L+ G C EGR+ E +F+ + C PN+ T+N + +
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F E ++ G C PDVV+ IIDGL K M+ G+ PD VT N +
Sbjct: 595 FLESMHSAG--CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQ 652
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------------- 162
K+ + ++A +L+ MI+ V+P+ TYNTL+ G + ++
Sbjct: 653 FCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVS 712
Query: 163 -------------------------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
G + +YNI I+ CK+ +++A SL
Sbjct: 713 ACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLL 772
Query: 192 REMLSEGIRADATTYNTLFM-------------------AINNVPPDSHVYTTYIDGLYK 232
EM + +R D +Y T+ + A+ + SH + ID K
Sbjct: 773 SEM--DTLR-DEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTK 829
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ EA+ + + C ++ T N +I LCK+ ++ AW++F M G+ V
Sbjct: 830 TKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDE-MAVRGIVASSV 888
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+Y ++I+G C +G+ ++A +L +M + E
Sbjct: 889 SYTVLIYGLCGQGRGKEALQVLEEMASSDCE 919
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 38/236 (16%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY----------NTLM 154
D+G + T N L ++G + + E M+ P++ TY N +
Sbjct: 118 DRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQID 177
Query: 155 DGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F K G + +V Y IL +CK ++DA+ + R
Sbjct: 178 KAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFR------------------ 219
Query: 211 MAINNVP-PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
N+P PD+ Y I G + A++ + K + T N LIDGLCK
Sbjct: 220 ----NIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKAS 275
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ H M + G+TPD VT+N ++ G CK G+ ++A+ LL M E P+
Sbjct: 276 KTDKASEMLHE-MVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPS 330
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 42/256 (16%)
Query: 3 RASGGFVLLGRILMS-CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R + L+ +L + C T+N++I LC EG + +A L + + N +T+
Sbjct: 693 RLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTY 752
Query: 62 NTL-----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--PDVV- 113
N L+ +++E + D V+ T +I GLCK +D+ + ++V
Sbjct: 753 NIFIDRLCKEGRLDEASSLLSEMDTL--RDEVSYTTVIIGLCK-AEQLDRASKLAREMVA 809
Query: 114 ---------TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
T N++ D +K +++EA LL +M+QR +P+ TYN ++
Sbjct: 810 VKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVD 869
Query: 158 -AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
AW +G SY +LI G C ++A+ + EM S D +
Sbjct: 870 KAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKW---- 925
Query: 211 MAINNVPPDSHVYTTY 226
+V P S TT+
Sbjct: 926 ---EDVAPHSQFQTTF 938
>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 567
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 173/363 (47%), Gaps = 60/363 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG L +++ PN+V +N+++ GLC G + EA LF ++ V +PNV+T
Sbjct: 166 IGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVT 225
Query: 61 FNTLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------- 100
+N L + LF EMV E G++ PDV T + +++G CK+
Sbjct: 226 YNCLIQGLCGEVGGWREGVGLFNEMVAEKGIV--PDVQTFSILVNGFCKEGLLLRAESMV 283
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
GFM+ G+ +VVT N + +MEEA + ++M++
Sbjct: 284 GFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVRE------------------- 324
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP 217
+GC V +YN LI+G+CK + V A+SL EM+ +G+ D T+ +L F +
Sbjct: 325 GEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPL 384
Query: 218 PDSHVYTT---------------YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
++ T +DGLYK EAM +F A+ L I N ++
Sbjct: 385 AAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIML 444
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG+CK+G+L A + ++ GL D T+NIMI G C+EG A LL M+E G
Sbjct: 445 DGMCKMGKLNDARKLLSFVLVK-GLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGC 503
Query: 323 EPN 325
PN
Sbjct: 504 PPN 506
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 46/290 (15%)
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
TL L L ++ E ++ + I++GLCK G M+ + + P+V
Sbjct: 129 TLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGDTSGALESLKKMVKRNLEPNV 188
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AW-------- 159
V N + D L K G + EA L M +V PN TYN L+ G W
Sbjct: 189 VVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFN 248
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG DV +++IL+NG+CK+ + A S+ M+ G+ + TYN+L
Sbjct: 249 EMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSL------- 301
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI--GNHKCVLTIETCNCLIDGLCKIGRLKIA 274
I G + EA++VF + C+ ++ T N LI G CK+ ++ A
Sbjct: 302 ----------ISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKA 351
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ M GL PDV T+ +I GF + G+ A L + M++ G P
Sbjct: 352 MSLLSE-MVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVP 400
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 120/272 (44%), Gaps = 48/272 (17%)
Query: 86 DVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLS------KDGKME 129
DV T +I+ LC+ G M G+ P +VTLN + + L K G
Sbjct: 111 DVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGDTS 170
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSKG---CRHDVYSYNILI 175
A L+ M++R++ PN YN ++DG ++ G +V +YN LI
Sbjct: 171 GALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLI 230
Query: 176 NGYCKD-RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
G C + + V L EM++E + PD ++ ++G K G
Sbjct: 231 QGLCGEVGGWREGVGLFNEMVAE----------------KGIVPDVQTFSILVNGFCKEG 274
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVT 293
+L A + + L + T N LI G C R++ A +F M+ + G P VVT
Sbjct: 275 LLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVT 334
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +IHG+CK + KA LL +M GL+P+
Sbjct: 335 YNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPD 366
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLAL---------VALN 70
N+VT+NSLI G C R+ EA R+F + C P+V+T+N+L A++
Sbjct: 294 NVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMS 353
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L EMV G PDV T T++I G + G M DQG P + T V+ D
Sbjct: 354 LLSEMV---GKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQGQVPILQTCAVVLD 410
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
L K EA L M + ++ + YN ++DG K G +
Sbjct: 411 GLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKI 470
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D Y++NI+I G C++ ++DA L R+M G + +YN + D Y
Sbjct: 471 DSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLR-KYDISRSRKY 529
Query: 227 IDGLYKNGFVLEA 239
+ + GF ++A
Sbjct: 530 LQIMKDKGFPVDA 542
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VT+NSLI G C ++ +A L ++ DP+V T+ +L L A L
Sbjct: 330 PSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKEL 389
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M ++ V P + TC ++DGL K M G+ D+V N+M D
Sbjct: 390 FITMKDQGQV---PILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIVIYNIMLDG 446
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ K GK+ +A LL ++ + + ++ T+N ++ G GC +
Sbjct: 447 MCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPN 506
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--FMAIN 214
SYN+ + G + ++ + + M +G DATT L F++ N
Sbjct: 507 KCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTAELLIRFLSAN 555
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 22/138 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + LL +L+ + T+N +IKGLC EG + +A L +K+ C PN +
Sbjct: 450 MGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCS 509
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N G++ K D+ + M D+G D T ++
Sbjct: 510 YNVFVQ-------------GLLRKYDISRSRKYLQ------IMKDKGFPVDATTAELLIR 550
Query: 121 NLSKDGKMEEANCLLEVM 138
LS + EE N E +
Sbjct: 551 FLSAN---EEDNAFQEFL 565
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 121/447 (27%), Positives = 182/447 (40%), Gaps = 123/447 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
+GR GF G IL + + N V N L+ GLC R+ EA L +++ F C PNV+
Sbjct: 103 LGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVV 162
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------- 99
+ NTL AL L M + G C P+VVT IIDGLCK
Sbjct: 163 SCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVL 222
Query: 100 -------------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKD 125
DG M+D+G++PDVVT N + D L K
Sbjct: 223 QHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 282
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
++ A +L+ MI + V P+ TYNT++DG K + D+ +Y
Sbjct: 283 QAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTY 342
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------------------- 209
N LI+GY ++ V EM + G+ D TY+ L
Sbjct: 343 NCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIR 402
Query: 210 -------------------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
M N + P+++++ + K + E
Sbjct: 403 KGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDE 462
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
AM +FS + H + T LID LCK+GR+ A F+ ++ N G+TP+ V +N ++
Sbjct: 463 AMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI-NDGVTPNSVVFNSLV 521
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+G C + +KA L +M + G+ PN
Sbjct: 522 YGLCTVDRWEKAEELFFEMWDQGVRPN 548
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 175/364 (48%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + +PN FN ++ + I EA +F +++ P+V+T+ L AL
Sbjct: 431 LLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALC 490
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVV 113
L ++ V +F + P+ V +++ GLC ++ F M DQG+RP+VV
Sbjct: 491 KLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVV 550
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N + NL +G++ A L++ M + V PN +YNTL+ G
Sbjct: 551 FFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVM 610
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP- 218
S G + D+ SY+ L+ GYCK +++A L REML +G+ A TY+T+ + +
Sbjct: 611 VSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRF 670
Query: 219 -----------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
D + Y ++GL K V EA K+F ++ + I T +
Sbjct: 671 SEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIM 730
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
ID L K GR K A D+F + + GL P+VVTY IM+ +EG + + L L ME++G
Sbjct: 731 IDVLFKGGRKKDAMDLFASIPSH-GLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSG 789
Query: 322 LEPN 325
P+
Sbjct: 790 CTPD 793
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 164/352 (46%), Gaps = 54/352 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + +++ TPN V FNSL+ GLCT R +A LF ++ PNV+
Sbjct: 492 LGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVF 551
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FNT+ +VA L + M GV +P+V++ +I G C G
Sbjct: 552 FNTIMCNLCNEGQVMVAQRLIDSM-ERVGV--RPNVISYNTLIGGHCLAGRTDEAAQLLD 608
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G++PD+++ + + K G+++ A CL M+++ V P TY+T++ G
Sbjct: 609 VMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTR 668
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + D+Y+YNI++NG CK V++A + + + S+ +R
Sbjct: 669 RFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLR------- 721
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P+ +T ID L+K G +AM +F++I +H V + T ++ + +
Sbjct: 722 ----------PNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQ 771
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G L +D + M+ G TPD V N +I G+ +A L ++E
Sbjct: 772 EGLLD-EFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDE 822
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
S R D+ +Y+IL +C+ +E + +L G R + N L
Sbjct: 83 SNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQL----------- 131
Query: 221 HVYTTYIDGLYKNGFVLEAMKV-FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
++GL V EAM + + C+ + +CN L+ GLC R++ A ++ H
Sbjct: 132 ------LNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLH 185
Query: 280 MLMQNPG--LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ ++ G TP+VVTYN +I G CK +A G+L M + G++
Sbjct: 186 TMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVK 231
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 24/162 (14%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAI------------------------NNVPPD 219
++DA+ L E+L A +N L + N V PD
Sbjct: 30 IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y+ + G + F I + N L++GLC R+ A DI
Sbjct: 90 LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
M G P+VV+ N ++ G C E + ++A LL M E G
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDG 191
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 175/376 (46%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F + V + ++I GLC G+ +A ++F K+ PN+I +
Sbjct: 154 GRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMY 213
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----------DG 101
NT+ LV A L EMV E G+ + DV + ++I G C D
Sbjct: 214 NTVIDGLCKQGLVDEACGLCTEMV-ENGI--ELDVYSYNSMIHGFCSVGRFQAAVKLLDE 270
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
++ + PDV T N++ D L K G++ EA ++ VMI+R P+ +YN LM+G+
Sbjct: 271 MVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSG 330
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ +V SY LINGYCK R V++A+ L EM ++ + D TYN
Sbjct: 331 SVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYN 390
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M + P D Y +D +K+ +A+ +F I
Sbjct: 391 CLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEI 450
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
I T N L+DGLCK GRLK A +IF L+ G P++ TYNIMIHG CKEG +
Sbjct: 451 GISPNIRTYNILLDGLCKSGRLKYAKEIFQ-LLSAKGCQPNIRTYNIMIHGLCKEGFLDE 509
Query: 310 ANGLLLDMEETGLEPN 325
A LL M PN
Sbjct: 510 AEALLYKMVNNNYLPN 525
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 36/246 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR S + ++ ++ + P++V++N+L+ G C G + EA ++F K+ PNVI+
Sbjct: 294 LGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVIS 353
Query: 61 FNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ TL +V A+ L EM N+ V PD VT ++DGL K G
Sbjct: 354 YCTLINGYCKVRMVDEAMVLLTEMHNKNLV---PDTVTYNCLLDGLSKSGRSLYEWDLVE 410
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
M G D++T NV+ D+ K K ++A L + +I+ ++PN TYN L+DG
Sbjct: 411 AMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSG 470
Query: 157 --------FAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F S KGC+ ++ +YNI+I+G CK+ +++A +L +M++ + T++
Sbjct: 471 RLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFD 530
Query: 208 TLFMAI 213
T+ AI
Sbjct: 531 TIVRAI 536
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
++P ++T +++ + ++ G+M A LL +++ + TLM G
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILTTLMKGLCLKGRVLEAV 160
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ +G R D Y +ING CK DA+ + +M + IR
Sbjct: 161 SLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKM--KKIR------------- 205
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V P+ +Y T IDGL K G V EA + + + + L + + N +I G C +GR +
Sbjct: 206 --VYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQA 263
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + ++ + PDV T+NI+I G CK G+ +A ++ M + G +P+
Sbjct: 264 AVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPD 315
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 173/362 (47%), Gaps = 58/362 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD--PNVITFNTL--ALVALNLFEEM- 75
PN+VT++ LI GLC GRI EA L +++ CD PN+IT+N+ L ++ E
Sbjct: 105 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 164
Query: 76 -----VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+ + + PD VT + +IDGLCK G M+ G P+V+T N + +
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K KME A+ ++E M+ + V P+ TY+ L+D F S+GC
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284
Query: 167 DV-----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------ 209
+V ++NILI G CK N E A +L EM+++ ++ D T+ L
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344
Query: 210 ------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M VPP+ Y + GL K+G + EA + + + CV T L+
Sbjct: 345 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 404
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ R A + L ++ G PD VTYNI++ G K G+ ++A +L +M G +
Sbjct: 405 ALCRASRTDDALQLVSEL-KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 463
Query: 324 PN 325
P+
Sbjct: 464 PD 465
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 172/377 (45%), Gaps = 64/377 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
+ G + P +VT+N++I GLC + LF++L P+V+T+NTL +L
Sbjct: 23 IFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSL 82
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR------------- 109
EE G + C P+VVT + +I+GLCK G +D+
Sbjct: 83 CKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG-RIDEARELIQEMTRKSCDVL 141
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD----VNPNTCTYNTLMDGFAWWSK--- 162
P+++T N D L K EA L+ + RD V+P+T T++TL+DG +
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSL--RDGSLRVSPDTVTFSTLIDGLCKCGQIDE 199
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G +V +YN L+NG CK +E A ++ M+ +G+ D TY+ L
Sbjct: 200 ACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVD 259
Query: 212 AI-----------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
A N + PD + I G K G +A +F +
Sbjct: 260 AFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 319
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T LIDGLCK G+++ A DI LM N G+ P+VVTYN ++HG CK G+ +
Sbjct: 320 KNLQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNALVHGLCKSGRIE 378
Query: 309 KANGLLLDMEETGLEPN 325
+A L +M +G P+
Sbjct: 379 EACQFLEEMVSSGCVPD 395
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 66/358 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P+ VTF++LI GLC G+I EA +F + PNVIT+N L A
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 237
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR----------PDVVTL 115
+ E MV++ GV PDV+T + ++D CK + + GM PD VT
Sbjct: 238 MIESMVDK-GV--TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTF 294
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N++ K G E+A+ L E M+ +++ P+ T+ L+DG +
Sbjct: 295 NILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGN 354
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP---- 217
G +V +YN L++G CK +E+A EM+S G D+ TY +L A+
Sbjct: 355 LGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDD 414
Query: 218 --------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNC 260
PD+ Y +DGL+K+G +A+ V + G+ T C
Sbjct: 415 ALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC-- 472
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL + G L ++ +++ G+ PD T + ++ C+ G+ ++ + E
Sbjct: 473 -FSGLHRSGNLAGTMELLRVVLAK-GMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
AL +F + GV P +VT II+GLCK ++++G PDVVT N
Sbjct: 20 ALEIFRGEMARDGV--APTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNT 77
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ D+L K G +EEA L M R PN TY+ L++G K
Sbjct: 78 LIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 137
Query: 164 CR--HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
C ++ +YN ++G CK +A L R + +R V PD+
Sbjct: 138 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR---------------VSPDTV 182
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++T IDGL K G + EA VF + V + T N L++GLCK +++ A +
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES- 241
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+TPDV+TY++++ FCK + +A LL M G PN
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 285
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ S P+ +T+ SL+ LC R +A +L +L F DP+ +T+
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 434
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ + EEMV G +PD T GL + G
Sbjct: 435 NILVDGLWKSGKTEQAITVLEEMV---GKGHQPDSFTFAACFSGLHRSGNLAGTMELLRV 491
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
++ +GM PD T + + D + + GK+++ +++
Sbjct: 492 VLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIK 525
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++ LC+ G A +IF M G+ P +VTYN +I+G CK L ++
Sbjct: 5 NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64
Query: 319 ETGLEPN 325
E G P+
Sbjct: 65 ERGHHPD 71
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 175/360 (48%), Gaps = 58/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALV 67
+PN++TFN++I GLC G++ +A + + V+ PNV+T+NTL
Sbjct: 227 SPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYK 286
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A + +EMV P+ VT +IDG CKD M QG++P VVT N
Sbjct: 287 ADAILKEMVEN---KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNS 343
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKG 163
+ + L +GK+ EA LL+ M+ ++ PN TYN L++G+ +G
Sbjct: 344 LVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQG 403
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+V ++N L++GYCK +E+A L + ML +G +A+TYN L
Sbjct: 404 LTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M V D+ Y I + +A ++ + + + T N L++G
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G L+ A ++ M+ G +VVTYN++I G+C++G+ + ANGLL +M E GL PN
Sbjct: 524 CMEGNLRAALNLRKQ-MEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPN 582
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 137/287 (47%), Gaps = 46/287 (16%)
Query: 84 KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
K V++C ++ L K+ M+ + + P+++T N + + L K GK+ +A
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGD 251
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------------GCRHDVYSYNILIN 176
+++ M PN TYNTL+DG+ + + ++N+LI+
Sbjct: 252 VVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+CKD N+ A+ + EM S+G++ TYN+L M +N+ P
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ Y I+G K + EA ++F IG + T N L+ G CK G+++ A+ +
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LL 430
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M G P+ TYN +I GFC+EG+ ++ LL +M+ G++ +
Sbjct: 431 QKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 34/240 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + VLL +L S PN++T+N+LI G C + + EA LF + PNVITF
Sbjct: 352 GKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITF 411
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
NTL + L ++++ E G + P+ T +I G C++G M +
Sbjct: 412 NTLLHGYCKFGKMEEAFLLQKVMLEKGFL--PNASTYNCLIVGFCREGKMEEVKNLLNEM 469
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G++ D VT N++ + + ++A L++ M+ + + P+ TYN L++G+
Sbjct: 470 QCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNL 529
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+G +V +YN+LI GYC+ +EDA L EML +G+ + TTY +
Sbjct: 530 RAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F+L +L F PN T+N LI G C EG++ E L ++ + +T+
Sbjct: 422 GKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTY 481
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A L +EM+++ G+ KP +T +++G C +G
Sbjct: 482 NILISAWCEKKEPKKAARLIDEMLDK-GL--KPSHLTYNILLNGYCMEGNLRAALNLRKQ 538
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M +G +VVT NV+ + GK+E+AN LL M+++ + PN TY + +
Sbjct: 539 MEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKE 591
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+N + ++ F G+++ L++ +CN L+ L K ++ +++ ++P++
Sbjct: 172 ENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRK-ISPNL 230
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+T+N +I+G CK G+ KA ++ DM+ G PN
Sbjct: 231 ITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPN 264
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 174/377 (46%), Gaps = 55/377 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN--VFCCDPNVI 59
GR LL ++ + P+M T + LI LC +I EA + +N + +
Sbjct: 63 GRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCF 122
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF------- 102
++N+L A +F MV+E V+ PDVV+ + +IDG CK D
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVV--PDVVSYSILIDGFCKIDELGRAEKLY 180
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+D P+V T N + L + G++ +A + E MI +P+ TY+TL+ GF
Sbjct: 181 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLA 240
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
A S+GCR + +YN L++G CK+ ++A L R+M+ G D TY
Sbjct: 241 RKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTY 300
Query: 207 NTLFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TL NV PD Y + G ++ G EA ++F + +
Sbjct: 301 TTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVS 360
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+C + N +IDGL K RL A ++F + Q+ G +PD+VTYN +I G C E +
Sbjct: 361 RECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS 420
Query: 309 KANGLLLDMEETGLEPN 325
+A + +++ L P+
Sbjct: 421 EAMKVFKEIDRLKLSPD 437
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 57/304 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA + + I ++C PN+ T+N+ + GL +GRI +A +++++ C P+VIT
Sbjct: 173 LGRAEKLYKQM--IDLNC-VPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVIT 229
Query: 61 FNTL----ALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++TL +L A LFE M++ C+P+ VT ++ GLCK+
Sbjct: 230 YSTLIHGFSLARKHDQAHELFEAMISRG---CRPNAVTYNCLLHGLCKESKPDEAHELFR 286
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+++G PD VT + GK+E+A + + M+ + +P+ YN L+ GF
Sbjct: 287 KMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAG 346
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTY 206
S+ C+ D S+NI+I+G K + ++DAV + M + G D TY
Sbjct: 347 KPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 406
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N+L I GL + EAMKVF I K N L++ +
Sbjct: 407 NSL-----------------IFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMY 449
Query: 267 KIGR 270
G
Sbjct: 450 AAGH 453
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 151/348 (43%), Gaps = 70/348 (20%)
Query: 22 NMVTFNSLIKGLCTEGRI---LEAARLFKKLNVF-------CCDPNVITFNTLALV--AL 69
N V + + + GLC G+I EA R ++ C + V AL
Sbjct: 10 NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVT-------LNV 117
+L E M+ C PD+ T + +I+ LCK + + QGM + T N
Sbjct: 70 SLLETMIKR--GYC-PDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNS 126
Query: 118 MTDNLSKDGKMEEANCLLEVMI-QRDVNPNTCTYNTLMDGFAWWSK-------------- 162
+ ++L K K+ +A + M+ +R V P+ +Y+ L+DGF +
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
C +V +YN +NG + + DA + EM+S G D TY+TL
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLI------------ 234
Query: 223 YTTYIDGLYKNGFVL-----EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+GF L +A ++F A+ + C T NCL+ GLCK + A ++
Sbjct: 235 ----------HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHEL 284
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +++ G PD VTY +++GFC G+ ++A + +M G +P+
Sbjct: 285 FRKMVER-GCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 211 MAINNVPPDSHV-YTTYIDGLYKNGFV---LEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
MA+ + P ++V +T ++ GL K+G + EA + + + TC+ +I LC
Sbjct: 1 MAVESKAPLNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELC 60
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
K GR+ A + +++ G PD+ T++++I+ CK + Q+A L M T
Sbjct: 61 KAGRVDSALSLLETMIKR-GYCPDMATHSMLINELCKADKIQEAQEFLQGMNRT 113
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 172/349 (49%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LG+++ F P++ TF SLI G C RI EA + ++ P+V+ + T+
Sbjct: 128 FLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLC 187
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL+LF +M N +G+ +PDVV T++++GLC G MM + ++P
Sbjct: 188 KNGHVDNALSLFNQMEN-YGI--RPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKP 244
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------- 156
DV+T N + D K+GK+ +A L MIQ + PN TY +L++G
Sbjct: 245 DVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMF 304
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ +KGC DV +Y LING+CK + VEDA+ + EM +G+ + T
Sbjct: 305 YLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTIT----------- 353
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YTT I G G A +VF + + I T N L+ LC G++ A
Sbjct: 354 ------YTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALM 407
Query: 277 IFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
IF + + G+ P++ TYN+++HG C G+ +KA + DM++ ++
Sbjct: 408 IFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMD 456
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 66/278 (23%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ PN+ T+ SLI GLC EGR+ EA ++F + C P+V+ + +L
Sbjct: 268 LYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFC 327
Query: 65 ----ALVALNLFEEM---------------VNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
A+ +F EM + FG++ KP+V G M+
Sbjct: 328 KCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVF--------GHMVS 379
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN---PNTCTYNTLMDGFAWWSK 162
+G+ P++ T NV+ L +GK+ +A + E M +R+++ PN TYN L+ G + K
Sbjct: 380 RGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGK 439
Query: 163 GCRH-----DVYSYNI---------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ ++ +I G CK V+DA++L + S+G++ + T
Sbjct: 440 LEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT--- 496
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I GL++ G +LEA +F +
Sbjct: 497 --------------YTTMISGLFREGLMLEAHVLFRKM 520
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
M + DV N C + +M G +D+Y+ N+L+N +C+ A S +++
Sbjct: 84 MKKFDVVINLCKHLQIM--------GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKL 135
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G D T+ +L M + PD +YTT ID L KNG V A
Sbjct: 136 GFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNA 195
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ +F+ + N+ + L++GLC GR + A D+ M + PDV+T+N +I
Sbjct: 196 LSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDA-DLLLRGMMKRKIKPDVITFNALID 254
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
F KEG+ A L +M + + PN
Sbjct: 255 AFVKEGKLLDAKELYNEMIQMSIAPN 280
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--MAINNVP------- 217
+ + L+N K + + ++LC+ + G+ D T N L ++ P
Sbjct: 70 SIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFL 129
Query: 218 ---------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD +T+ I+G + EAM + + + + +ID LCK
Sbjct: 130 GKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKN 189
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A +F+ M+N G+ PDVV Y +++G C G+ + A+ LL M + ++P+
Sbjct: 190 GHVDNALSLFNQ-MENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPD 245
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 19/163 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF---KKLNVFCCDPN 57
+G+ + + G ++ PN+ T+N L+ LC G++ +A +F +K + PN
Sbjct: 364 VGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPN 423
Query: 58 VITFNTL--ALVALNLFEEMVNEFGVICKPDV----VTCTNIIDGLCKDGFMMD------ 105
+ T+N L L E+ + FG + K D+ +T T II G+CK G + D
Sbjct: 424 IRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFC 483
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
+G++P+VVT M L ++G M EA+ L M + V+
Sbjct: 484 SLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 178/377 (47%), Gaps = 60/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R G L+ R+L FTPN +T+ L+ GLC G++ EA L K+ PN +
Sbjct: 291 LNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT----PNDVH 346
Query: 61 FNTL--------ALVALN--LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----- 105
F L L N L+++M+ C+PDV T +I GLCK G M
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNG---CRPDVFTFNTLIHGLCKKGLMGSAVDMV 403
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
G P+++T + D K ++EEA +L M + N YN L+
Sbjct: 404 NDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN 463
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
KGC+ D++++N LI G CK EDA++L R+ML +G+ A+ TY
Sbjct: 464 GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523
Query: 207 NTLFMA-------------INNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL A +N++ P D Y I K G +A+ +F +
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVR 583
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V + +CN LI+GLC++G++ A ++ ++ GL PDVVTYN +I+G CK G +
Sbjct: 584 KDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHR-GLAPDVVTYNSLINGLCKMGNIR 642
Query: 309 KANGLLLDMEETGLEPN 325
+A L ++ G++P+
Sbjct: 643 EAFNLFNKLQAEGIQPD 659
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 161/349 (46%), Gaps = 60/349 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P + TF ++K LC + A L + + C PN + + TL AL L
Sbjct: 206 PTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKL 265
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDN 121
EEM F + C PDV T ++I GLC+ +G M+ +G P+ +T V+ +
Sbjct: 266 LEEM---FLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNG 322
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRH 166
L + GK++EA +V++ + PN + L++G+ + GCR
Sbjct: 323 LCRVGKVDEA----QVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRP 378
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHV- 222
DV+++N LI+G CK + AV + +M + G + TY TL F N + +V
Sbjct: 379 DVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVL 438
Query: 223 --------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y + L KNG V +A+ + + + C I T N LI GLCK+
Sbjct: 439 NEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKV 498
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R + A ++ ++ + G+ + VTYN +IH F + G Q+A L+ DM
Sbjct: 499 DRKEDALALYRDMLLD-GVIANTVTYNTLIHAFLRGGAIQEALKLVNDM 546
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 54/317 (17%)
Query: 41 EAARLFKKLN-VFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+A R+ + V+CC+P ++N + LV+ N C ++ +
Sbjct: 155 QATRMLLDMKGVYCCEPTFKSYNVVLDILVSAN-------------------CPSVAANV 195
Query: 98 CKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ M+ +G+ P V T V+ L +++ A LL M + PN+ Y TL+
Sbjct: 196 FYE--MLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHAL 253
Query: 158 AWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+ + GC DV ++N +I G C+ + + L ML G +
Sbjct: 254 SKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPND 313
Query: 204 TTYNTLF-------------MAINNVP-PDSHVYTTYIDGLYKNGFVLEAMK-VFSAIGN 248
TY L + +N VP P+ +T I+G K+G + EA ++ +
Sbjct: 314 ITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIK 373
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ C + T N LI GLCK G + A D+ + + N G TP+++TY ++ GFCK+ Q +
Sbjct: 374 NGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSAN-GCTPNLITYTTLLDGFCKKNQLE 432
Query: 309 KANGLLLDMEETGLEPN 325
+A +L +M G E N
Sbjct: 433 EAGYVLNEMSAKGFELN 449
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 37/238 (15%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
G+VL + F N++ +N L++ LC G++ +A + +++ C P++ TFNTL
Sbjct: 433 EAGYVL-NEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTL 491
Query: 65 ALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
AL L+ +M+ + GVI + VT +I + G M+
Sbjct: 492 IFGLCKVDRKEDALALYRDMLLD-GVIA--NTVTYNTLIHAFLRGGAIQEALKLVNDMLF 548
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G D +T N + K G E+A L + M+++D+ P+ + N L++G K C
Sbjct: 549 RGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCN 608
Query: 166 H--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
DV +YN LING CK N+ +A +L ++ +EGI+ DA TYNTL
Sbjct: 609 ALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTL 666
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 38/222 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L +L+ N VT+N+LI G I EA +L + C + IT+N
Sbjct: 500 RKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L AL LF+EMV + V P ++C +I+GLC+ G M
Sbjct: 560 GLIKAFCKLGATEKALGLFDEMVRKDLV---PSNISCNLLINGLCRVGKVCNALELLRDM 616
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM--------- 154
+ +G+ PDVVT N + + L K G + EA L + + P+ TYNTL+
Sbjct: 617 IHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMF 676
Query: 155 -DGFAWWSKGCR-----HDVYSYNILINGYCKDRNVEDAVSL 190
D + +G +DV Y IL++ + K+ E+ +S
Sbjct: 677 DDAYLLLLRGVENAFIPNDVTWY-ILVSNFIKEIGKENGISF 717
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ P++VT+NSLI GLC G I EA LF KL P+ IT
Sbjct: 603 VGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAIT 662
Query: 61 FNTL 64
+NTL
Sbjct: 663 YNTL 666
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 58/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
++ R+L+ FTP+ +T+ L+ GLC GR+ A LF ++ P + FNTL V
Sbjct: 303 MVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFV 358
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A + +MV +G++ PDV T ++I G K G M ++G +P
Sbjct: 359 THGRLDDAKAVLSDMVTSYGIV--PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKP 416
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V + ++ D K GK++EA LL M + PNT +N L+ F
Sbjct: 417 NVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 476
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KGC+ DVY++N LI+G C+ ++ A+ L R+M+SEG+ A+ TYNTL
Sbjct: 477 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 536
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M D Y + I GL + G V +A +F + V + +C
Sbjct: 537 GEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISC 596
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+GLC+ G ++ A + F M G TPD+VT+N +I+G C+ G+ + + ++
Sbjct: 597 NILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 655
Query: 319 ETGLEPN 325
G+ P+
Sbjct: 656 AEGIPPD 662
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 160/327 (48%), Gaps = 51/327 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN V + +LI L R+ EA +L +++ + C P+ TFN + L +N +M
Sbjct: 244 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 303
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
VN + PD +T +++GLCK G + + +P V N + G++
Sbjct: 304 VNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRL 363
Query: 129 EEANCLLEVMI-QRDVNPNTCTYNTLMDGFAWW----------------SKGCRHDVYSY 171
++A +L M+ + P+ CTYN+L+ + +W +KGC+ +VYSY
Sbjct: 364 DDAKAVLSDMVTSYGIVPDVCTYNSLI--YGYWKKGLVGLALEVLRDMRNKGCKPNVYSY 421
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
IL++G+CK +++A +L EM ++G++ + +N L I
Sbjct: 422 TILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCL-----------------ISAFC 464
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA-WDIFHMLMQNPGLTPD 290
K + EA+++F + C + T N LI GLC++ +K A W + M+ + G+ +
Sbjct: 465 KEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE--GVVAN 522
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDM 317
VTYN +I+ F + G+ ++A L+ +M
Sbjct: 523 TVTYNTLINAFLRRGEIKEARKLVNEM 549
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + LL + PN V FN LI C E RI EA +F+++ C P+V T
Sbjct: 431 LGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 490
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
FN+L AL L +M++E GV+ + VT +I+ + G
Sbjct: 491 FNSLISGLCEVDEIKHALWLLRDMISE-GVVA--NTVTYNTLINAFLRRGEIKEARKLVN 547
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ QG D +T N + L + G++++A L E M++ + P++ + N L++G
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG 607
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G D+ ++N LING C+ +ED +++ R++ +EGI D TYN
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYN 667
Query: 208 TL 209
TL
Sbjct: 668 TL 669
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 54/356 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNV 58
++G F + R+LM +V F S+++ G + RL ++ NV+ C+P
Sbjct: 117 SNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTF 176
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
++N + E +V+ C + + D M+ + + P + T V+
Sbjct: 177 KSYNVV-------LEILVSG----------NCHKVAANVFYD--MLSRKIPPTLFTFGVV 217
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L +++ A +L M + PN+ Y TL+ + ++ GC
Sbjct: 218 MKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV-------- 216
D ++N +I G CK + +A + ML G D TY L + +
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD 337
Query: 217 ------PPDSHVYTTYIDGLYKNGFVLEAMKVFS-AIGNHKCVLTIETCNCLIDGLCKIG 269
P S ++ T I G +G + +A V S + ++ V + T N LI G K G
Sbjct: 338 LFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKG 397
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A ++ M+N G P+V +Y I++ GFCK G+ +A LL +M GL+PN
Sbjct: 398 LVGLALEVLRD-MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPN 452
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 45/241 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ N VT+N+LI G I EA +L ++ + IT+N+L
Sbjct: 510 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLC 569
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A +LFE+M+ + G++ P ++C +I+GLC+ G M+ +G P
Sbjct: 570 RAGEVDKARSLFEKMLRD-GLV--PSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTP 626
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D+VT N + + L + G++E+ + + + P+T TYNTLM +W KG
Sbjct: 627 DIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLM---SWLCKG------- 676
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
G+ V DA L E + +G + T++ L ++ VP ++ T+ + +
Sbjct: 677 ------GF-----VYDACLLLDEGIEDGFVPNDRTWSILLQSL--VPQETLDRRTFYNAV 723
Query: 231 Y 231
+
Sbjct: 724 F 724
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 151 NTLMDGFAWW--SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+T M+ F+W KG RH Y +LI + + L +M EGI +
Sbjct: 86 STSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGI----VFKES 141
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCK 267
LF++I + K GF + ++ + N + C T ++ N +++ L
Sbjct: 142 LFISI-------------MRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVS 188
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+A ++F+ ++ + P + T+ +++ C + A +L DM + G PN
Sbjct: 189 GNCHKVAANVFYDMLSRK-IPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPN 245
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 60/340 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ +++ GLC G A L K+ + NV+ ++
Sbjct: 198 KASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYS 257
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ GV +P+V+T +++I LC G M
Sbjct: 258 TVIDSLCKYRHEDDALNLFTEMENK-GV--RPNVITYSSLISCLCNYGRWSDASRLLSDM 314
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT + + D K GK+ +A L E MI+R ++PN TY++L++GF
Sbjct: 315 IERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRL 374
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K C +V +YN LING+CK + V+ + L REM G+ + TY TL
Sbjct: 375 GEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLC 266
I G ++ A VF ++G H +LT N L+DGLC
Sbjct: 435 -----------------IHGFFQARDCDNAQMVFKQMVSVGVHPNILTY---NILLDGLC 474
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
K G+L A +F L Q + PD+ TYNIMI G CK G+
Sbjct: 475 KNGKLAKAMVVFEYL-QRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 166/356 (46%), Gaps = 54/356 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L+ +++ + P+ VTF +LI GL + EA L ++ C P+++T+
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+ +ALNL +M E I + +VV + +ID LCK D M
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKM--EAAKI-EANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++G+RP+V+T + + L G+ +A+ LL MI+R +NPN T++ L+D F K
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 164 CRHD--------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + +++Y+ LING+C + D + ++ML IR D
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLINGFC----MLDRLGEAKQMLELMIRKDCL----- 390
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
P+ Y T I+G K V + M++F + V T LI G +
Sbjct: 391 --------PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F M + G+ P+++TYNI++ G CK G+ KA + ++ + +EP+
Sbjct: 443 DCDNAQMVFKQ-MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 160/383 (41%), Gaps = 87/383 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L G + S P+++ F+ L+ + + +K+ + N+ T+N L +
Sbjct: 65 LFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNIL----I 120
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
N F C+ C+ + L G MM G PD+VTLN + + ++
Sbjct: 121 NCF----------CR-----CSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILI 175
+A L++ M++ P+T T+ TL+ G +K GC+ D+ +Y ++
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225
Query: 176 NGYCKD-----------------------------------RNVEDAVSLCREMLSEGIR 200
NG CK R+ +DA++L EM ++G+R
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ TY++L M + P+ ++ ID K G +++A K+
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKL 345
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + I T + LI+G C + RL A + ++++ L P+VVTYN +I+GFC
Sbjct: 346 YEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL-PNVVTYNTLINGFC 404
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K + K L +M + GL N
Sbjct: 405 KAKRVDKGMELFREMSQRGLVGN 427
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI +G++++A +L++++ DPN+ T+
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY 361
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
++L L+ E ++ C P+VVT +I+G CK M
Sbjct: 362 SSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ + VT + + + A + + M+ V+PN TYN L+DG
Sbjct: 422 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAK 481
Query: 157 ----FAWWSKGCRH-DVYSYNILINGYCK 180
F + + D+Y+YNI+I G CK
Sbjct: 482 AMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 175/349 (50%), Gaps = 72/349 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+PN+VT+ ++I LC GR+ +A ++ F +MV+E
Sbjct: 326 FSPNVVTYTTVIDILCKAGRVEDA--------------------------VSHFSQMVSE 359
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
PD++T T++I GLC G M+++G+ P+ + LN + D+L K+G++
Sbjct: 360 G---LSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRV 416
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
EA+ + +I V P+ +Y L+DG+ K G R D +Y+ L
Sbjct: 417 LEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSAL 476
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPP--------DSHV 222
+NGYCK+ V+DA++L REM S+ ++ +A TYN LF A V DS +
Sbjct: 477 LNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGI 536
Query: 223 ------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
Y + GL +N FV EA+++F + + + L + T N +I GL K+GR+ A
Sbjct: 537 QLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKS 596
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F ++ + GL PD + Y +MI +EG ++++ L L ME+ G N
Sbjct: 597 LFSAILPS-GLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTAN 644
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 163/344 (47%), Gaps = 50/344 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN++++N +I GL EG + +A LF ++ PN++T+N++ A++ E +
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+ + + K + ++ M G++PDVVT +++ D K G+ EA +
Sbjct: 197 LQQ--MFDKGQLEEAVRLLKK------MSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIF 248
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGC---RHDV-------------YSYNILINGYC 179
+ M++R NP+ TY TL+ G+A +KG HD+ + +NILI Y
Sbjct: 249 DSMVRRGQNPDAYTYRTLLHGYA--TKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYA 306
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K+ ++ A++ EM +G + TY T+ M + PD
Sbjct: 307 KNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDII 366
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+T+ I GL G + K+ + N N ++D LCK GR+ A D F +
Sbjct: 367 TFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQI 426
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G+ PDVV+Y I+I G+C +G+ ++ LL M GL P+
Sbjct: 427 I-HVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPD 469
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 128/280 (45%), Gaps = 34/280 (12%)
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
M+ + G C P+V++ +I+GL K+G M+ QG P++VT N + D L
Sbjct: 126 HMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLC 185
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
K M++A +L+ M + M G G + DV +Y++LI+ YCK
Sbjct: 186 KAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSG-----GGLQPDVVTYSLLIDYYCKIGR 240
Query: 184 VEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTT 225
+A ++ M+ G DA TY TL M + +P + HV+
Sbjct: 241 CTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNI 300
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I KN + +AM F + + T +ID LCK GR++ A F M +
Sbjct: 301 LIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQ-MVSE 359
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL+PD++T+ +IHG C G+ +K L +M G+ PN
Sbjct: 360 GLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPN 399
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 22/225 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LLGR++ P+ VT+++L+ G C GR+ +A L++++ PN IT+
Sbjct: 449 GKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITY 508
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-----MDQGM 108
N + +VA F + + G+ + + T ++ GLC++ F+ M QG+
Sbjct: 509 NIILHGLFHAGRVVAAREFYMKIVDSGI--QLGINTYNIVLGGLCENSFVDEALRMFQGL 566
Query: 109 RP-----DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
R +V T N+M L K G++ +A L ++ + P+ Y ++
Sbjct: 567 RSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLL 626
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
D ++ NG + +A+ R++L +G A TY T
Sbjct: 627 EESDELFLSMEKNGCTANSRTLNAI--VRKLLEKGDVRRAGTYLT 669
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D ++ ILI +C V L L E R + + N PP+ Y
Sbjct: 93 DACTFGILIRCFCN-------VGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMV 145
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML----- 281
I+GL+K G V +A +F + I T N +IDGLCK + A + +
Sbjct: 146 INGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQ 205
Query: 282 ----------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M GL PDVVTY+++I +CK G+ +A + M G P+
Sbjct: 206 LEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPD 259
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 182/378 (48%), Gaps = 73/378 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTE-------------GRILEAARLFK 47
+G+ F + IL + PN++T +LIKGLC + G+ A +L +
Sbjct: 108 LGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLR 167
Query: 48 KLNVFCCDPNVITFNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGL- 97
+++ PNV+ +NT+ LV A +L+ EMV+E G+ PDVVT + +I G
Sbjct: 168 RVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSE-GI--SPDVVTYSALISGFF 224
Query: 98 ----CKDGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
KD M+ + ++PDV T N++ D KDGKM+E + +M+++ + PN
Sbjct: 225 IVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVV 284
Query: 149 TYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TY +LMDG+ + G D SYNI+ING+CK + V++A++L ++M
Sbjct: 285 TYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKM 344
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ N+ P+ YT+ IDGL K+G + A+K+ + +
Sbjct: 345 HCK-----------------NIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPD 387
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQN-------PGLTPDVVTYNIMIHGFCKEGQH 307
I T + ++D LCK ++ A + L G DV Y +MI GFC +G
Sbjct: 388 IITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLF 447
Query: 308 QKANGLLLDMEETGLEPN 325
+A LL ME+ G P+
Sbjct: 448 NEALALLSKMEDNGRIPD 465
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 117/265 (44%), Gaps = 46/265 (17%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+G+ ++VTLN++ + S+ G+ + + ++++ +PN T TL+ G
Sbjct: 89 KGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGT 148
Query: 161 ----------------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
K + +V YN +I+ CK + V +A L EM+SEG
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEG 208
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
I D TY+ L M + N+ PD + + +DG K+G + E
Sbjct: 209 ISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 268
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
VF+ + + T L+DG C + ++ A IF+ + Q G+ PD +YNIMI+G
Sbjct: 269 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQG-GVNPDTQSYNIMING 327
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FCK + +A L M + PN
Sbjct: 328 FCKIKKVDEAMNLFKKMHCKNIIPN 352
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 64/264 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++++ P++ TFN L+ G C +G++ E +F + PNV+T
Sbjct: 226 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVT 285
Query: 61 --------------------FNTLALVALN----LFEEMVNEFGVICK------------ 84
FNT+A +N + M+N F I K
Sbjct: 286 YCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMH 345
Query: 85 -----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
P+VVT T++IDGLCK G M D+G+ PD++T + + D L K+ +++
Sbjct: 346 CKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVD 405
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
+A LL + + D F KG DVY+Y ++I G+C +A++
Sbjct: 406 KAIALLTKLKDQ----------VFEDLFV---KGYNLDVYAYTVMIQGFCVKGLFNEALA 452
Query: 190 LCREMLSEGIRADATTYNTLFMAI 213
L +M G DA TY + +++
Sbjct: 453 LLSKMEDNGRIPDAKTYEIIILSL 476
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 74/255 (29%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+I+ D + ++N L+ K ++ + ++ K A+SL R+M +
Sbjct: 35 IIKNDEHNLVSSFNRLL-----HQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELK 89
Query: 198 GIRADATTYNTL---FMAINNVPPDSHV----------------------------YTTY 226
GI ++ T N L F + P V Y T
Sbjct: 90 GIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTL 149
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK------------------- 267
I+GL K G A+++ + + N +ID +CK
Sbjct: 150 INGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGI 209
Query: 268 ----------------IGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+G+LK A D+F+ M+++N + PDV T+NI++ GFCK+G+ ++
Sbjct: 210 SPDVVTYSALISGFFIVGKLKDAIDLFNKMILEN--IKPDVYTFNILVDGFCKDGKMKEG 267
Query: 311 NGLLLDMEETGLEPN 325
+ M + G++PN
Sbjct: 268 KTVFAMMMKQGIKPN 282
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 167/358 (46%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVAL 69
+ ++ T+ LI GLC G L A +K+ PNV+ ++T L AL
Sbjct: 178 YPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEAL 237
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL EM N GV +P++VT +I GLC G MM GMRPD+ LN++
Sbjct: 238 NLCSEM-NGKGV--RPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILV 294
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCR 165
D K+GK+ +A ++ MI P+ TYN+L+ + S+G
Sbjct: 295 DAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRL 354
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------MAINNV 216
D+ + LI+G+CKD+N+ A+ L EM G D T+ TL +A +
Sbjct: 355 PDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKEL 414
Query: 217 PPDSHVY---------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ H Y +DGL K + EA+ + A+ L I + L+DG+C
Sbjct: 415 FLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCS 474
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L AW++F L GL +V Y IMI G CK+G KA LL++MEE G PN
Sbjct: 475 AGKLNAAWELFSSL-PGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPN 531
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 63/318 (19%)
Query: 30 IKGLCTEGR---ILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLFEEMVN 77
++ LC G+ I EA LF+ + P+V F L A+V A++L + M +
Sbjct: 45 MRNLCWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFS 104
Query: 78 EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGK 127
G+ + D +T +I+ LC+ G M G+ P V+TL + + L G
Sbjct: 105 SLGI--EADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGN 162
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ +A L + M + W+ DVY+Y +LING CK + A
Sbjct: 163 VAQAVGLADHMEK-----------------MWYPL----DVYTYGVLINGLCKTGDTLAA 201
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
V R+M N P+ VY+T +DGL K+G V EA+ + S +
Sbjct: 202 VGWLRKMEER-----------------NWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMN 244
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T CLI GLC GR K A + +M+ G+ PD+ NI++ FCKEG+
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMK-MGMRPDLQMLNILVDAFCKEGKV 303
Query: 308 QKANGLLLDMEETGLEPN 325
+A ++ M TG P+
Sbjct: 304 MQAKSVIGFMILTGEGPD 321
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++G ++++ P++ T+NSLI C + ++ EA R+F + P+++ F
Sbjct: 301 GKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVF 360
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+L A++L EEM ++ G + PDV T T +I G C+ G
Sbjct: 361 TSLIHGWCKDKNINKAMHLLEEM-SKMGFV--PDVATWTTLIGGFCQAGRPLAAKELFLN 417
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M G P++ T V+ D L K+ + EA L + M + +++ N Y+ L+DG
Sbjct: 418 MHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGK 477
Query: 158 --AWWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A W KG + +VY Y I+I G CK +++ A L M G + TYN
Sbjct: 478 LNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNV 537
Query: 209 LFMAI 213
+
Sbjct: 538 FVQGL 542
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL ++ P++ N L+ C EG++++A + + + P+V T+
Sbjct: 266 GRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTY 325
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N+L + A+ +F MV+ + PD+V T++I G CKD
Sbjct: 326 NSLIHIYCLQNKMNEAMRVFHLMVSRGRL---PDIVVFTSLIHGWCKDKNINKAMHLLEE 382
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G PDV T + + G+ A L M + PN T ++DG
Sbjct: 383 MSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL----- 437
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
CK+ + +AVSL + M + + Y+ L
Sbjct: 438 ----------------CKENLLSEAVSLAKAMEKSNLDLNIVIYSIL------------- 468
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+DG+ G + A ++FS++ + + +I GLCK G L A D+ + M
Sbjct: 469 ----LDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLL-INM 523
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ G P+ TYN+ + G + + ++ L M + G
Sbjct: 524 EENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFS 564
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 36/218 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++V F SLI G C + I +A L ++++ P+V T+ TL L A L
Sbjct: 355 PDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKEL 414
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M +++G + P++ TC I+DGLCK+ M + ++V +++ D
Sbjct: 415 FLNM-HKYGQV--PNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDG 471
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
+ GK+ A L + + + N Y ++ G GC +
Sbjct: 472 MCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPN 531
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+YN+ + G + + ++ M +G DA T
Sbjct: 532 NCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAAT 569
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 182/406 (44%), Gaps = 91/406 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL----------------N 50
GF +LG + P +VTF +LI GLC EG + AAR L N
Sbjct: 125 GFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIIN 184
Query: 51 VFC-------------------CDPNV-ITFNT---------LALVALNLFEEMVNEFGV 81
C CD +V I ++T + ALNLF M ++ G+
Sbjct: 185 GLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSK-GI 243
Query: 82 ICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+PD+V ++I GLC G MM +G+ P+V T NV+ DN KDG + A
Sbjct: 244 --QPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRA 301
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILING 177
++ M+ V P+ TYN+++ G S KG ++ +Y+ LI+G
Sbjct: 302 KTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHG 361
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
+CK +N+ A+ L EM++ G+ D T++TL M ++ P+
Sbjct: 362 WCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPN 421
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+DGL+K F EA+ +F + L + N ++DG+C G+L A ++F
Sbjct: 422 LQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFS 481
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + G+ DVV Y MI G CKEG A LL+ MEE G PN
Sbjct: 482 CL-PSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPN 526
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 151/345 (43%), Gaps = 65/345 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LLG ++ PN+ TFN L+ C +G I A + + +P+V+T+
Sbjct: 261 GRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTY 320
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
N++ A+ +FE M+++ G + P++VT +++I G CK G
Sbjct: 321 NSVISGHCLLSQMGDAVKVFELMIHK-GFL--PNLVTYSSLIHGWCKTKNINKALFLLGE 377
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN--TCTYNTLMDGFAWW 160
M++ G+ PDVVT + + K GK E A L M + D +PN TC
Sbjct: 378 MVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCA----------- 426
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
I+++G K + +A+SL REM + + YN +
Sbjct: 427 ------------IILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIV----------- 463
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+DG+ G + +A ++FS + + + + +I GLCK G L A ++ M
Sbjct: 464 ------LDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLL-M 516
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G P+ TYN+ + G + ++ LL M+ GL +
Sbjct: 517 KMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSAD 561
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 44/285 (15%)
Query: 84 KPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KPDV T T II+ LC G M G+ P VVT + + L +G + A
Sbjct: 103 KPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAAR 162
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY-SYNILINGY 178
+ + N+ TY +++G + C DV +Y+ +++
Sbjct: 163 FADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSL 222
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
CKD V +A++L M S+GI+ D YN+L + N + P+
Sbjct: 223 CKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNV 282
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ +D K+G + A + + + + T N +I G C + ++ A +F
Sbjct: 283 QTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFE- 341
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM + G P++VTY+ +IHG+CK KA LL +M +GL P+
Sbjct: 342 LMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPD 386
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNV 216
+S G + DVY+ I+IN C + S+ M G+ T+ TL A NV
Sbjct: 98 YSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNV 157
Query: 217 P---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC-NC 260
+S+ Y I+GL K G A+ I C L + +
Sbjct: 158 ARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYST 217
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
++D LCK G + A ++F M + G+ PD+V YN +IHG C G+ ++A LL +M
Sbjct: 218 IMDSLCKDGMVCEALNLFSG-MTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRK 276
Query: 321 GLEPN 325
G+ PN
Sbjct: 277 GIMPN 281
>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 167/355 (47%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNLF 72
++ T+ LI GLC G L A +K+ PNV+ ++T L ALNL
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM + GV +P++VT +I GLC G M+ GMR D+ TLN++ D
Sbjct: 241 SEMSGK-GV--RPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAF 297
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDV 168
K+GK+ +A ++ MI P+ TYN+L+ + S+GC D+
Sbjct: 298 CKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDI 357
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------MAINNVPPD 219
+ LI+G+CKD+N+ + L EM G D T+ TL +A + +
Sbjct: 358 VVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLN 417
Query: 220 SHVY---------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
H Y +DGL K + EA+ + A+ L I + L+DG+C G+
Sbjct: 418 MHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGK 477
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L AW++F L GL +V TY IMI G CK+G KA LL++MEE G P+
Sbjct: 478 LNAAWELFSSL-PGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPD 531
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 139/318 (43%), Gaps = 63/318 (19%)
Query: 30 IKGLCTEGRIL---EAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMVN 77
++ LC G++ EA LF+ + P+V F L V A++L + + +
Sbjct: 45 MRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFS 104
Query: 78 EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGK 127
G+ + D +T +I+ LC+ G M G+ P V+TL + + L G
Sbjct: 105 SLGI--EADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGN 162
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ +A L++ M ++ P DVY+Y +LING CK + A
Sbjct: 163 VAQAVGLVDHM-EKMRYP--------------------LDVYTYGVLINGLCKTGDTLAA 201
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
V R+M N P+ VY+T +DGL K+G V EA+ + S +
Sbjct: 202 VEWLRKMEER-----------------NWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMS 244
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T CLI GLC GR K + +++ G+ D+ T NI++ FCKEG+
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIK-MGMRLDLQTLNILVDAFCKEGKV 303
Query: 308 QKANGLLLDMEETGLEPN 325
+A ++ M TG P+
Sbjct: 304 MQAKSVIGFMILTGEGPD 321
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++G ++++ P++ T+NSLI C + ++ EA R+F + C P+++ F
Sbjct: 301 GKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVF 360
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+L ++L EEM + G + PDVVT T +I G C+ G
Sbjct: 361 TSLIHGWCKDKNINKVMHLLEEMA-KMGFV--PDVVTWTTLIGGFCQAGRPLAAKELFLN 417
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M G P++ T V+ D L K + EA L E M + +++ N Y+ L+DG
Sbjct: 418 MHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGK 477
Query: 158 --AWWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A W KG + +VY+Y I+I G CK +++ A L M G D TYN
Sbjct: 478 LNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNV 537
Query: 209 LFMAI 213
+
Sbjct: 538 FVQGL 542
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 176/384 (45%), Gaps = 65/384 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F +TF L+KGLC + R +A + +++ C PNV +
Sbjct: 101 GRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 YNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNL------------SKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+D+G+ PDVVT + + L K+G++ E+ L ++M++ V P+ T
Sbjct: 221 EMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIIT 280
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y+TL+DG+ K G + + +Y+ LINGYCK +EDA+ L +EM
Sbjct: 281 YSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 340
Query: 196 SEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVL 237
S G+ D TYN + + + + Y + GL KN
Sbjct: 341 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 400
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A+++F + L T N +ID L K+GR A D+F N GL P+ TY +M
Sbjct: 401 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLM 459
Query: 298 IHGFCKEGQHQKANGLLLDMEETG 321
+G ++ + L L ME+ G
Sbjct: 460 AENIIGQGLLEELDQLFLSMEDNG 483
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 116/252 (46%), Gaps = 32/252 (12%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM 154
G G ++ +G R + +T + L D + +A + +L M + PN +YN L+
Sbjct: 106 GFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLL 165
Query: 155 DGFAWWSK-----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+G ++ G DV SY +ING+ K+ + + A S EML
Sbjct: 166 NGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225
Query: 198 GIRADATTYNTLFMAINNV----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
GI D TY+++ A+ P SH K G V+E+ K+F +
Sbjct: 226 GILPDVVTYSSIIAALCKGQAMDKPWSHC---------KEGRVIESEKLFDLMVRIGVKP 276
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T + LIDG C G++ A + M + GL P+ VTY+ +I+G+CK + + A L
Sbjct: 277 DIITYSTLIDGYCLAGKMDEAMKLLSG-MVSVGLKPNTVTYSTLINGYCKISRMEDALVL 335
Query: 314 LLDMEETGLEPN 325
+ME +G+ P+
Sbjct: 336 FKEMESSGVSPD 347
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ ++ + T
Sbjct: 326 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 385
Query: 61 FNTL--ALVALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDG----------FMM 104
+N + L L ++ + F +C K + T +ID L K G
Sbjct: 386 YNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFS 445
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G+ P+ T +M +N+ G +EE + L M N CT ++ M F
Sbjct: 446 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM-----EDNGCTVDSGMLNF 493
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 170/357 (47%), Gaps = 56/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL-------VALNL 71
PN+VT+ +LI ++ EA +L +++ C PN++T+N L AL A ++
Sbjct: 55 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++M+ E G P+V+T +++DG CK G M+ +GMRP+VVT + + D
Sbjct: 115 VKKMI-EGGF--APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K K EA +LE M V P+ TY+ L+ G K GC D
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
V Y+ +I+ +CK + +A +EM + D TYNT+ +
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+V PD Y+T I+GL K+ ++EA K+ + C + T +IDGLCK
Sbjct: 292 QMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRL+ A + M+ G P+VVTY +I G CK + +A ++ +M G PN
Sbjct: 352 GRLEEAEYLLQG-MKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 159/357 (44%), Gaps = 56/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL + + F P+ T +I + G + A L CDPNV+T+
Sbjct: 4 GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA---MDHLRSMGCDPNVVTY 60
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A+ L EEM E G C P++VT ++D LCK
Sbjct: 61 TALIAAFARAKKLEEAMKLLEEM-RERG--CPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++ G P+V+T N + D K G +++A LL +M+ + + PN TY+ L+DG K
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D ++Y+ LI+G CK +E+A + R M G
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG---------- 227
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD VY++ I K+G +LEA K + + + T N +IDGLCK+
Sbjct: 228 -------CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 280
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A I + ++ + PDVVTY+ +I+G CK +A LL M + G P+
Sbjct: 281 GKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPD 337
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 155/340 (45%), Gaps = 49/340 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LLG ++ PN+VT+++LI GLC + LEA + +++ P+ T++ L L
Sbjct: 149 LLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLC 208
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PDVV 113
+ EE + G C PDVV ++II CK G +++ Q MR PDVV
Sbjct: 209 KADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 268
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGF--------------A 158
T N + D L K GK+ EA +L+ M + DV P+ TY+T+++G
Sbjct: 269 TYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDR 328
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
GC DV +Y +I+G CK +E+A L + M G P
Sbjct: 329 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG-----------------CAP 371
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ YTT I GL K V EA +V + N C + T N +++GLC GR+K A +
Sbjct: 372 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 431
Query: 279 HMLMQNPG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ +PD TY +++ Q+A LL M
Sbjct: 432 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + PN+VT+ +LI GLC ++ EA R+ +++ C PN++T+
Sbjct: 352 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 411
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
NT+ A L + M + C PD T I++ L
Sbjct: 412 NTMVNGLCVSGRIKEAQQLVQRM-KDGRAECSPDAATYRTIVNAL 455
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 174/377 (46%), Gaps = 72/377 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLALVAL--------- 69
+PN+VTF++LI+GLC GR+ +A +++++ V PN T+ L L L
Sbjct: 378 SPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFL-LEGLCKAGDSRRL 436
Query: 70 -NLFEEMVNE------------------FGVICKPDVVTCTNIIDGLCKDG--------- 101
FE+M+ +C+P +VT ++ GL K G
Sbjct: 437 EQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLL 496
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
FM++ G+ PDV+T N + D L K+ ++ +A+ + + ++R PN TY+TL+DG +
Sbjct: 497 EFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKM 556
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+K GCR + +Y+ +++G K +EDAV + R+M G DA TY
Sbjct: 557 AKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTY 616
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL M P YTT GL ++G EA+++ +
Sbjct: 617 NTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 676
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
C T + ++DGLCK GR+ A F + ++ + P V+ Y+ +I G CK G+
Sbjct: 677 RGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRID 736
Query: 309 KANGLLLDMEETGLEPN 325
+A L M G P+
Sbjct: 737 EAYEFLERMIRAGRIPD 753
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 164/349 (46%), Gaps = 53/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ S +P+++TFNS++ GLC E RIL+A +FK+ C PNV+T++TL
Sbjct: 495 LLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 554
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL L +MV E G C+ + VT + ++DGL K G M D G P
Sbjct: 555 KMAKMDEALQLLAKMV-ELG--CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLP 611
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D VT N + D K ++ EA LL M++ +P+ TY TL G
Sbjct: 612 DAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEIL 671
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
++GC + +Y+ +++G CK V +A+ +M + + V
Sbjct: 672 DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV----------------V 715
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P Y+ IDGL K G + EA + + + + T + LI+GLC GR+ +
Sbjct: 716 APHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLE 775
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M G D+ YN MI+ +C +G+ A LL +M+ G+ N
Sbjct: 776 LF-CGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKN 823
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 171/407 (42%), Gaps = 86/407 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR V+L ++ + P+ VT+N+LI G R+ EA L +++ P+V+T
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVT 650
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG-----------FM 103
+ TL L F+E V + C P+ +T ++I+DGLCK G
Sbjct: 651 YTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 710
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
D+ + P V+ + + D L K G+++EA LE MI+ P+ T++ L++G
Sbjct: 711 RDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRI 770
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA-------- 201
+GC+ D+Y+YN +IN YC A +L EM + GI
Sbjct: 771 DTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIV 830
Query: 202 -------------------------DATTYNTLF------------------MAINNVPP 218
D +YNTL M + P
Sbjct: 831 IKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSP 890
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ Y T +DGL+K G A K+ + + + T +I GL K +L +A D F
Sbjct: 891 DACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYF 950
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ L PD + Y+ +I FCK + A LL +G+EP
Sbjct: 951 EEMLRK-NLKPDAIVYSSLIDAFCKADKVDDAWKLL---RSSGIEPT 993
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 157/352 (44%), Gaps = 48/352 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVI 59
GRA F LL R+ + P ++TF +IKGLC EG I A R+ ++ F D +
Sbjct: 85 GRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIH 144
Query: 60 TFNTLALVALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDGFMMDQGM------- 108
T AL L +E F + PD VT ++DGL K G + GM
Sbjct: 145 TVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAE 204
Query: 109 ---RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
P V T + D LSK G + A + M Q V+PNT TY+ L+DG
Sbjct: 205 SFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDI 264
Query: 159 ----WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
K + +++++ L++G C+ +E+A+ L + M
Sbjct: 265 ALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM-------------------- 304
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P+ + + ++GL + V EA ++F + C + T N L+ GLCK+ R+ A
Sbjct: 305 PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEA 364
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET-GLEPN 325
+ ++ + G +P+VVT++ +I G C G+ +A + M G+ PN
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPN 416
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 173/398 (43%), Gaps = 82/398 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + ++L+ FTP+ VT+N+++ GL GR+ A + + L P V T
Sbjct: 154 LGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFT 213
Query: 61 FNTLALVALNL---------FEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GFMM 104
F T+A+ L+ F + + + GV P+ VT +IDGLCK G +
Sbjct: 214 F-TIAVDGLSKAGNLTGAYEFFDSMPQTGV--SPNTVTYDALIDGLCKAGKLDIALGLLR 270
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
D+ + + + + L + ++EEA LL+ M PN +N+LM+G +
Sbjct: 271 DKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQARRVD 327
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDA---VSLCREMLSEGIRADATTYN 207
GC DV +YNIL+ G CK R + +A V L R +EG + T++
Sbjct: 328 EAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRR--TEGCSPNVVTFS 385
Query: 208 TLF-------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TL +A+ + P+ Y ++GL K G + F +
Sbjct: 386 TLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLE 445
Query: 249 HK---------------------CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+ C T+ T N L+ GL K G ++ A + ++++ GL
Sbjct: 446 REWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIES-GL 504
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+PDV+T+N ++ G CKE + A+ + E G PN
Sbjct: 505 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 542
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 131/322 (40%), Gaps = 79/322 (24%)
Query: 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI 82
MVT+N LI GLC GR+ +A F+K F P V+T++T
Sbjct: 1 MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYST------------------- 41
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+IDGLC+D M +G P+ VT N + + L G+ +EA
Sbjct: 42 ----------VIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAF 91
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
LLE M P T+ ++I G CK+ +E A +
Sbjct: 92 SLLERMAANGCPPELITF---------------------GLIIKGLCKEGEIEAAFRVVD 130
Query: 193 EMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYKNG 234
EM+ G D + L A+ + PD+ Y T +DGLYK G
Sbjct: 131 EMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAG 190
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A V + T+ T +DGL K G L A++ F + Q G++P+ VTY
Sbjct: 191 RLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT-GVSPNTVTY 249
Query: 295 NIMIHGFCKEGQHQKANGLLLD 316
+ +I G CK G+ A GLL D
Sbjct: 250 DALIDGLCKAGKLDIALGLLRD 271
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 52/271 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S + LL + N VT +IK LC RI EA F + C D I++
Sbjct: 803 GEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDE--ISY 860
Query: 62 NTL--ALVA-------LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL +LVA L L MV + G PD ++DGL K G
Sbjct: 861 NTLITSLVASRRSEQALELLRAMVADGG---SPDACNYMTVMDGLFKAGSPEVAAKLLQE 917
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G PD+ T +M LSK ++ A E M+++++ P+ Y++L+D F
Sbjct: 918 MRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADK 977
Query: 158 ---AW---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
AW S G + Y+ +++ CK+R + A+ + REM S+
Sbjct: 978 VDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSK-------------- 1023
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
N P H++T+ G V EA+K+
Sbjct: 1024 ---NCEPGIHIWTSLATAYVAEGRVDEAVKL 1051
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 131/320 (40%), Gaps = 51/320 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L R++ + P++VTF+ LI GLC GRI LF + C ++ +
Sbjct: 733 GRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAY 792
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
N + A L EEM G+ + VT +I LC + +D+ +
Sbjct: 793 NAMINAYCLKGEFSAAYALLEEM-KTHGI--AKNTVTHGIVIKALCGND-RIDEAVSYFH 848
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
D ++ N + +L + E+A LL M+ +P+ C Y T+MDG
Sbjct: 849 SIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSP 908
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S+G D+ +Y I+I+G K + + A EML + ++ DA Y++L
Sbjct: 909 EVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSL 968
Query: 210 FMAI---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
A + + P +Y+T +D L KN +A++V + + C
Sbjct: 969 IDAFCKADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPG 1028
Query: 255 IETCNCLIDGLCKIGRLKIA 274
I L GR+ A
Sbjct: 1029 IHIWTSLATAYVAEGRVDEA 1048
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN+LING CK V DA + R+ + G R TY+T+ IDG
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTV-----------------IDG 45
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L ++ V + K+ + C T N L++ L GR K A+ + + N G P
Sbjct: 46 LCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAAN-GCPP 104
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++T+ ++I G CKEG+ + A ++ +M + G P+
Sbjct: 105 ELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPD 140
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 176/384 (45%), Gaps = 65/384 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F +TF L+KGLC + R +A + +++ C PNV +
Sbjct: 101 GRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 YNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNL------------SKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+D+G+ PDVVT + + L K+G++ E+ L ++M++ V P+ T
Sbjct: 221 EMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIIT 280
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y+TL+DG+ K G + + +Y+ LINGYCK +EDA+ L +EM
Sbjct: 281 YSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEME 340
Query: 196 SEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVL 237
S G+ D TYN + + + + Y + GL KN
Sbjct: 341 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 400
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A+++F + L T N +ID L K+GR A D+F N GL P+ TY +M
Sbjct: 401 DALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLM 459
Query: 298 IHGFCKEGQHQKANGLLLDMEETG 321
+G ++ + L L ME+ G
Sbjct: 460 AENIIGQGLLEELDQLFLSMEDNG 483
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 116/252 (46%), Gaps = 32/252 (12%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM 154
G G ++ +G R + +T + L D + +A + +L M + PN +YN L+
Sbjct: 106 GFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLL 165
Query: 155 DGFAWWSK-----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+G ++ G DV SY +ING+ K+ + + A S EML
Sbjct: 166 NGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225
Query: 198 GIRADATTYNTLFMAINNV----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
GI D TY+++ A+ P SH K G V+E+ K+F +
Sbjct: 226 GILPDVVTYSSIIAALCKGQAMDKPWSHC---------KEGRVIESEKLFDLMVRIGVKP 276
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T + LIDG C G++ A + M + GL P+ VTY+ +I+G+CK + + A L
Sbjct: 277 DIITYSTLIDGYCLAGKMDEAMKLLSG-MVSVGLKPNTVTYSTLINGYCKISRMEDALVL 335
Query: 314 LLDMEETGLEPN 325
+ME +G+ P+
Sbjct: 336 FKEMESSGVSPD 347
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 47/231 (20%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V P+ CTY L+ GFA KG R + ++ L+ G C D+ DA
Sbjct: 82 EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDA 141
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI---------------------NNVPPDSHVYTT 225
+ + R M G + +YN L + PPD YTT
Sbjct: 142 MDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTT 201
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW---------- 275
I+G +K G +A + + + + + T + +I LCK + W
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIE 261
Query: 276 -DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ LM G+ PD++TY+ +I G+C G+ +A LL M GL+PN
Sbjct: 262 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPN 312
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ ++ + T
Sbjct: 326 ISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 385
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+N + L L ++ + F +C +MD ++ + T N+M
Sbjct: 386 YNIILHGLCKNKLTDDALQMFQNLC-------------------LMD--LKLEARTFNIM 424
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
D L K G+ +EA L + PN TY + +
Sbjct: 425 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 461
>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 171/363 (47%), Gaps = 60/363 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG L +++ PN+V +N+++ GLC G + EA L ++ V +PNV+T
Sbjct: 193 IGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVT 252
Query: 61 FNTLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------- 100
+N L + LF EMV E G++ PDV T + ++DG CK+
Sbjct: 253 YNCLIQGLCGEFGGWREGVGLFNEMVAEKGIV--PDVQTFSILVDGFCKEGLLLRAESVV 310
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
GFM+ G+ P+VVT N + +MEEA + +M++
Sbjct: 311 GFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVRE------------------- 351
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+GC V ++N LI+G+CK + V+ A+SL EM+ +G+ D T+ +L
Sbjct: 352 GEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPL 411
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + P+ +DGL K EA+ +F A+ L I N ++
Sbjct: 412 AARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIML 471
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG+CK+G+L A + ++ GL D TYNIMI G C+EG A LL M+E G
Sbjct: 472 DGMCKMGKLNDARKLLSCVLVK-GLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGC 530
Query: 323 EPN 325
PN
Sbjct: 531 PPN 533
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 32/230 (13%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW-- 160
DV TLN+ + L K +L +M + + P T NT+++G A W
Sbjct: 109 DVCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLV 168
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ G + +Y L+NG CK + A+ ++M+ N+
Sbjct: 169 EKMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKR-----------------NL 211
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-KIGRLKIAW 275
P+ VY +DGL K G V EA+ + +G + T NCLI GLC + G +
Sbjct: 212 GPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGV 271
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F+ ++ G+ PDV T++I++ GFCKEG +A ++ M G+EPN
Sbjct: 272 GLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPN 321
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 39/254 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLAL---------VAL 69
PN+VT+NSLI G C ++ EA R+F + C P+V+T N+L A+
Sbjct: 320 PNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAM 379
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMT 119
+L EMV G PDV T T++I G C ++ F M + G P++ T V+
Sbjct: 380 SLLSEMV---GKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVL 436
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D L K EA L M++ ++ + YN ++DG K G +
Sbjct: 437 DGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLK 496
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D Y+YNI+I G C++ ++DA L R+M G + +YN + D
Sbjct: 497 IDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLR-KYDIARSRK 555
Query: 226 YIDGLYKNGFVLEA 239
Y+ + GF ++A
Sbjct: 556 YLQIMKDKGFPVDA 569
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 38/230 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VT NSLI G C + +A L ++ DP+V T+ +L L A L
Sbjct: 357 PSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAAREL 416
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M E G + P++ TC ++DGL K MM G+ D+V N+M D
Sbjct: 417 FFTM-KEHGQV--PNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDG 473
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ K GK+ +A LL ++ + + ++ TYN ++ G GC +
Sbjct: 474 MCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPN 533
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--FMAINN 215
SYN+ + G + ++ + + M +G DATT L F++ N
Sbjct: 534 KCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSANE 583
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + LL +L+ + T+N +IKGLC EG + +A L +K+ C PN +
Sbjct: 477 MGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCS 536
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N G++ K D+ + M D+G D T ++
Sbjct: 537 YNVFVQ-------------GLLRKYDIARSRKYLQ------IMKDKGFPVDATTAELLIR 577
Query: 121 NLSKD 125
LS +
Sbjct: 578 FLSAN 582
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 174/374 (46%), Gaps = 56/374 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL- 64
F LGR++ S +T +TF+ L+K LC + R EA + +++ V C PNV ++ L
Sbjct: 110 AFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILL 169
Query: 65 --------ALVALNLFEEMV--NEFGVICKPDVVTCTNIIDGLCKDGF-----------M 103
+ AL+L M+ ++ PDVV+ +I+GL ++G M
Sbjct: 170 KGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQM 229
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+DQG+ PDVVT N + LSK M++A +L M++ PN T+N+L+ G+ K
Sbjct: 230 LDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKP 289
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G DV++YN L+ CK+ +A + M+ G + ++ TY TL
Sbjct: 290 NDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTL 349
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M N + PD +++ I K+G V +AM +FS +
Sbjct: 350 LHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGL 409
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T ++D LC +G++ A F L+ GLTPD V + +IHG C + KA
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDAMAQFGRLISE-GLTPDAVVFRNLIHGLCARDKWDKAE 468
Query: 312 GLLLDMEETGLEPN 325
L ++M G+ PN
Sbjct: 469 ELAVEMIGRGICPN 482
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 176/364 (48%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + P+ FN LI G++ +A LF K+ +P+ +T+ + AL
Sbjct: 365 LLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALC 424
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC-KDGF---------MMDQGMRPDVV 113
+ ++ + +FG + PD V N+I GLC +D + M+ +G+ P+ +
Sbjct: 425 MVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNI 484
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
N + ++L K+G + A + ++M++ DV + TYNTL+DG+ K
Sbjct: 485 FFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGM 544
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------- 208
G + + +YN +INGYCK+ +EDA SL R+M S+G+ TY+T
Sbjct: 545 VLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRT 604
Query: 209 -------LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
L+M + + D Y + GL +N +A+++F + L T N +
Sbjct: 605 AAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIM 664
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
ID L K GR A D+F L+ GL P+VVTY +M+ ++G ++ + L L +E+ G
Sbjct: 665 IDALLKGGRHDEAKDLFASLLAR-GLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNG 723
Query: 322 LEPN 325
N
Sbjct: 724 CTAN 727
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 36/254 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL +++ PN VT+N++I G C GRI +A LF+++ +P ++T+
Sbjct: 532 GKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTY 591
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG 107
+T+ A L+ M+ G+ K D+ T I+ GLC+ D + Q
Sbjct: 592 STILQGLFQARRTAAAKELYLWMIKS-GI--KFDIGTYNIILLGLCQNNCTDDALRIFQN 648
Query: 108 M-----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ + T N+M D L K G+ +EA L ++ R + PN TY +M
Sbjct: 649 LYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGL 708
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ GC + N L+ + V A ++ +A+T +
Sbjct: 709 LEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAES 768
Query: 209 LFMAINNVPPDSHV 222
L + +++ D H+
Sbjct: 769 LVLLVSSGKYDQHI 782
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 176/373 (47%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PDVVT N + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +Y++L++ CK+ +A + M G++ + TTY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD +V++ I K G V +AM VFS +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + GL+P + YN +IHG C + ++
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 460 AEELILEMLDRGI 472
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 165/363 (45%), Gaps = 55/363 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + P+ F+ LI +G++ +A +F K+ +PN +T+ + +
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+ FE+M++E P + ++I GLC M+D+G+
Sbjct: 418 KSGRVEDAMLYFEQMIDEG---LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + D+ K+G++ E+ L E+M++ V PN TYNTL++G+ K
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + + +Y+ LINGYCK +EDA+ L +EM S G+ D TYN + +
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN +A+++F + L T
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +ID L K+GR A D+F N GL P+ TY +M +G ++ + L L ME
Sbjct: 655 NIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 713
Query: 319 ETG 321
+ G
Sbjct: 714 DNG 716
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++ ++I G EG +A + ++ P+V+T+N++ AL ++ +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT +++ D L K
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P TY TL+ G+A G D Y
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
++ILI Y K V+ A+ + +M +G+ +A TY + M
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 213 INNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P + VY + I GL N + + + C+ TI N +ID CK GR+
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI-FFNSIIDSHCKEGRV 492
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F LM G+ P+V+TYN +I+G+C G+ +A LL M GL+PN
Sbjct: 493 IESEKLFE-LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 55/354 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +P+V+T++ L + A +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M KP++ T ++ G G M+ G+ PD +++
Sbjct: 324 FDSMTKRG---LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHD 167
+K GK+++A + M Q+ +NPN TY ++ D ++ + G
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
YN LI+G C E A L EML GI + +N++
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V P+ Y T I+G G + EAMK+ S + + T + LI+G CKI
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
R++ A +F M++ G++PD++TYNI++ G + + A L + + E+G +
Sbjct: 561 RMEDALVLFKE-MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 37/266 (13%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM 154
G G ++ +G R D + + L D + +A + +L M + PN +YN L+
Sbjct: 106 GFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILL 165
Query: 155 DGFAWWSK-----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
G ++ G DV SY +ING+ K+ + + A S EML
Sbjct: 166 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
GI D TYN++ A+ N V PD Y + + G +G EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + T + L+D LCK GR A IF M GL P++ TY ++
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS-MTKRGLKPEITTYGTLLQ 344
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +G + +GLL M G+ P+
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPD 370
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 167 DVYSYNILI-----------------------------------NGYCKDRNVEDAVSLC 191
D+ +Y ILI G C D+ DA+ +
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 192 -REMLSEGIRADATTYNTLFMAI---------------------NNVPPDSHVYTTYIDG 229
R M G + +YN L + PPD YTT I+G
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+K G +A + + + + + T N +I LCK + A ++ + +++N G+ P
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMP 264
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D +TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 22/223 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN VT+++LI G C R+ +A LFK++ P++IT+
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG- 107
N T A + E G + ++ T I+ GLCK D M Q
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGT--QIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Query: 108 ----MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++ + T N+M D L K G+ +EA L + PN TY + +
Sbjct: 643 CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLL 702
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
D ++ NG D + + + RE+L G A TY
Sbjct: 703 EELDQLFLSMEDNGCTVDSGMLNFI--VRELLQRGEITRAGTY 743
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 177/357 (49%), Gaps = 57/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL R+ +S P++VT+N++++ LC G++ EA + + C P+VIT+
Sbjct: 194 GEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITY 250
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A+ L +EM ++ CKPDVVT +I+G+CK+G
Sbjct: 251 TILIEATCKESGVGQAMKLLDEMRDKG---CKPDVVTYNVLINGICKEGRLDEAIRFLNH 307
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M G +P+V+T N++ ++ G+ +A L MI++ +P+ T+N L++
Sbjct: 308 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGL 367
Query: 156 -GFA------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G A GC + SYN L++ CKD+ +E A+ M+S G D TYNT
Sbjct: 368 IGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNT 427
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L A L K+G V A+++ + +G+ C + T N +IDGL K+
Sbjct: 428 LLTA-----------------LCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKV 470
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ A + M+ GL PD++TY+ ++ G +EG+ +A D+EE G++PN
Sbjct: 471 GKTDDAIKLLDE-MKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPN 526
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 149/335 (44%), Gaps = 54/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LI G+C EGR+ EA R + + C PNVIT N + + A
Sbjct: 280 PDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKF 339
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EM+ + C P VVT +I+ LC+ G M G P+ ++ N +
Sbjct: 340 LAEMIRKG---CSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L KD KME A L++M+ R P+ TYNTL+ SKGC
Sbjct: 397 LCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPV 456
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I+G K +DA+ L EM +G++ D TY+TL +
Sbjct: 457 LITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTL-----------------V 499
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + G V EA+ F + T N ++ GLCK + A D F M G
Sbjct: 500 GGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAID-FLAYMVARGC 558
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P +Y I+I G EG ++A LL ++ G+
Sbjct: 559 KPTETSYMILIEGLAYEGLAKEALELLNELCSRGV 593
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 155/362 (42%), Gaps = 69/362 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ SLI+GLC G+ +A R+ + L P+VIT+
Sbjct: 124 GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITY 183
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ-GMRPDVVT 114
N L I G CK G ++D+ + PDVVT
Sbjct: 184 NVL-----------------------------ISGYCKTGEIGSALQLLDRMSVSPDVVT 214
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------- 161
N + L GK++EA +L+ +QR+ P+ TY L++ S
Sbjct: 215 YNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMR 274
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------- 213
KGC+ DV +YN+LING CK+ +++A+ M S G + + T+N + ++
Sbjct: 275 DKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWM 334
Query: 214 -----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P + I+ L + G + A+ V + H C + N L+
Sbjct: 335 DAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLL 394
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
LCK +++ A + +M + G PD+VTYN ++ CK+G+ A +L + G
Sbjct: 395 HALCKDKKMERAIEYLD-IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453
Query: 323 EP 324
P
Sbjct: 454 SP 455
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWS---------KGCRH 166
L ++G++EE LE M+ R P+ +L+ G W + G
Sbjct: 119 RLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVP 178
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV +YN+LI+GYCK + A+ L M +V PD Y T
Sbjct: 179 DVITYNVLISGYCKTGEIGSALQLLDRM--------------------SVSPDVVTYNTI 218
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ L +G + EAM+V +C + T LI+ CK + A + M++ G
Sbjct: 219 LRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDE-MRDKG 277
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTYN++I+G CKEG+ +A L M G +PN
Sbjct: 278 CKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPN 316
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 22/143 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P ++T+N++I GL G+ +A +L ++ P++IT++TL A+
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
F ++ E GV KP+ +T +I+ GLCK +M+ +G +P + ++ +
Sbjct: 514 FFHDL-EEMGV--KPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIE 570
Query: 121 NLSKDGKMEEANCLLEVMIQRDV 143
L+ +G +EA LL + R V
Sbjct: 571 GLAYEGLAKEALELLNELCSRGV 593
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 176/365 (48%), Gaps = 50/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L +L P+ FN LIK G + A +F ++ +P+V+T++T+ AL
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALC 437
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
+ ++ V +F + P + T +I G C G MM++GMRPD+
Sbjct: 438 RIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIG 497
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N + +NL K G++ +A + + I ++PN YNTLMDG+
Sbjct: 498 CFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVM 557
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINN 215
S G + +V Y L+NGYCK +++ +SL RE+L +GI+ T YN LF A
Sbjct: 558 VSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRT 617
Query: 216 VPP--------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
VP D + Y+ + GL+KN EA+ +F + + I T N +
Sbjct: 618 VPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIM 677
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+ +I R++ A D+F + ++ GL P VVTY+IM+ KEG ++A+ + ME G
Sbjct: 678 IAGMFQIRRVEEAKDLFASISRS-GLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAG 736
Query: 322 LE-PN 325
E PN
Sbjct: 737 CEQPN 741
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 169/375 (45%), Gaps = 54/375 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G++L + + + ++L++GLC R EA L ++ C P+V ++
Sbjct: 123 RPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSY 182
Query: 62 NTLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L +L + M+ E G +C P+ V +IDG K+G
Sbjct: 183 -CIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNE 241
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PD+ T N + + L K M++A +L M+ + V P+ TYN+L+ G++
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQ 301
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W S+G DV + N L+ CK ++DA + M +G + D +Y
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + + PDSH++ I K G + A +F+ +
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + +I LC+IG++ A + F+ ++ + G+ P + TY+ +I GFC G KA
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMI-DQGVAPSISTYHFLIQGFCTHGDLLKA 480
Query: 311 NGLLLDMEETGLEPN 325
L+L M G+ P+
Sbjct: 481 KDLVLQMMNKGMRPD 495
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 60/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+NSLI G + G+ EA R+ KK+ P+V+T N+L A ++
Sbjct: 284 PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDV 343
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M + K D+ + +++G G M+ G+ PD NV+
Sbjct: 344 FDSMAMKGQ---KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKA 400
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
+K G ++ A + M ++ V P+ TY+T++ K G
Sbjct: 401 YAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPS 460
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +Y+ LI G+C ++ A L +M+++G+R D +N + INN
Sbjct: 461 ISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFI---INN------------ 505
Query: 228 DGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
L K G V++A +F +IG H V+ N L+DG C +G+++ A +F +M +
Sbjct: 506 --LCKLGRVMDAQNIFDFTISIGLHPNVMVY---NTLMDGYCLVGKMENALRVFD-VMVS 559
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P+VV Y +++G+CK G+ + L ++ G++P+
Sbjct: 560 AGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPS 600
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 167/373 (44%), Gaps = 49/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++ +L + P++ T+NS+I GLC G + EA ++ C PN +T+
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC--------KDGF--MMD 105
NTL L N EE V+ PDV T ++I GLC + F M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G PD T N++ D+L GK++EA +L+ M + TYNTL+DGF +K
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
G + +YN LI+G CK R VEDA L +M+ EG + D TYN+L
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLT 548
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N PD Y T I GL K G V A K+ +I L
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIAL 608
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T N +I GL + + A ++F +++ PD V+Y I+ G C G ++A
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVD 668
Query: 313 LLLDMEETGLEPN 325
L+++ E G P
Sbjct: 669 FLVELLEKGFVPE 681
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 163/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+ TF ++++G EG + A R+ +++ F C + ++ N + AL
Sbjct: 220 LVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
N +EM N+ G PD T +++GLCK G M+ +G PDV T N +
Sbjct: 280 NFIQEMSNQDGFF--PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L K G+++EA L+ MI RD +PNT TYNTL+ SKG
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV ++N LI G C RN A+ L EM S+G D TYN L
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M ++ Y T IDG K + EA ++F + H T N LIDGLCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A + M+M+ G PD TYN ++ FC+ G +KA ++ M G EP+
Sbjct: 518 SRRVEDASQLMDQMIME--GQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 155/360 (43%), Gaps = 57/360 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----PNVITFNTLALVALN---- 70
F+P + ++ L G + ++ + + C+ P +I + A L
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEIL 138
Query: 71 -LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVM 118
+ M+++FG+ KPD +++ L DG M G++PDV T NV+
Sbjct: 139 GVVHWMIDDFGL--KPDTHFYNRMLN-LLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVL 195
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L + ++ A +LE M + P+ T+ T+M G+ GC
Sbjct: 196 IKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGC 255
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTL-------------- 209
S N++++G+CK+ VEDA++ +EM ++ G D T+NTL
Sbjct: 256 SWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 210 ----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M PD + Y + I GL K G V EA++ + C T N LI L
Sbjct: 316 EIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTL 375
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK +++ A ++ +L + G+ PDV T+N +I G C H+ A L +M G EP+
Sbjct: 376 CKENQVEEATELARVLT-SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 173/356 (48%), Gaps = 64/356 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
+ L R++ P V++ +L++ LC E R +A L + + P+V+T+ TL
Sbjct: 99 LFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGL 158
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A+ L EM E G+ +P+VV + ++ G CK G M +G+
Sbjct: 159 CDAADVDKAVELLREMC-ESGI--EPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIE 215
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVV + D+L ++GK+++A +++ M++R + PN V
Sbjct: 216 PDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN---------------------VV 254
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+YN+LIN CK+ +V++A+SL ML +G+ DA TYNTL ++
Sbjct: 255 TYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEM 314
Query: 216 ------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
V P+ + + I GL K G + +A +V + + C + T N LI GL ++
Sbjct: 315 IHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVH 374
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++K A ++ M + GL PD TY+I+I+GFCK Q +A LL M G+EP
Sbjct: 375 KVKKAMELMDE-MASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 155/345 (44%), Gaps = 64/345 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++ +++ PN+VT+N LI +C EG + EA L + + +T+
Sbjct: 232 GKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL A+ L EEM++ ++ +P+VVT ++I GLCK G
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMV-EPNVVTFNSVIHGLCKTGRMRQAFQVRDM 350
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + G ++VT N++ L + K+++A L++ M + P
Sbjct: 351 MAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEP----------------- 393
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
D ++Y+ILING+CK V+ A SL +M +GI + Y L A
Sbjct: 394 ----DSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAA---------- 439
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIF-HM 280
L + G + +A F + HK C L + + +I G C++ K A + HM
Sbjct: 440 -------LCEQGMMEQARNFFDEM--HKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHM 490
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + GL PD VTY+++I+ F G A +L M +G P+
Sbjct: 491 L--DEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPD 533
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 135/317 (42%), Gaps = 55/317 (17%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
+ V++N+++ LC +G L+AA ++ P +++ TL AL A + V
Sbjct: 77 DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAV--- 133
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
GL +D M G+RPDVVT + L +++A LL M
Sbjct: 134 ----------------GLLRD--MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC 175
Query: 140 QRDVNPNTCTYNTLMDGF---AWWS-----------KGCRHDVYSYNILINGYCKDRNVE 185
+ + PN Y+ L+ G+ W +G DV Y LI+ C++ V+
Sbjct: 176 ESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVK 235
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
A + +M+ G+ + TYN L I+ + K G V EAM + +
Sbjct: 236 KATQVMDKMMERGLEPNVVTYNVL-----------------INSMCKEGSVKEAMSLRNN 278
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKE 304
+ L T N LI GL + + A + ++ + P+VVT+N +IHG CK
Sbjct: 279 MLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKT 338
Query: 305 GQHQKANGLLLDMEETG 321
G+ ++A + M E G
Sbjct: 339 GRMRQAFQVRDMMAENG 355
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 107/257 (41%), Gaps = 70/257 (27%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTFNS+I GLC GR+ +A ++ + C N++TFN L A+ L
Sbjct: 323 PNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMEL 382
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+EM + +PD T + +I+G CK M G+ P++V +
Sbjct: 383 MDEMASSG---LEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAA 439
Query: 122 LSKDGKMEEA---------NCLLEV-------------------------MIQRDVNPNT 147
L + G ME+A NC L+V M+ + P++
Sbjct: 440 LCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDS 499
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TY+ L++ FA + G DV ++ LI GY + E + L RE
Sbjct: 500 VTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIRE 559
Query: 194 MLSEGIRADATTYNTLF 210
M ++ I D+ +T++
Sbjct: 560 MTAKDIALDSKIISTIY 576
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ Y T + L + G L+A + H+ T + L+ LC R A +
Sbjct: 77 DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ PDVVTY +I G C KA LL +M E+G+EPN
Sbjct: 137 RD-MQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPN 182
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 176/382 (46%), Gaps = 66/382 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L ++ P +V + LI+GLC E RI EA +F+ + PN+ T+NT+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMDQ---G 107
AL L++EM+ + G++ P+VVT +IDGLCK F++D G
Sbjct: 272 GYCKIAHVKKALELYQEMLGD-GLL--PNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P++ N + D K G + EA L + + ++ P+ TY+ L+ G
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
KG + +YN LI+GYCK+ N+E A+ +C +M +GI + T++TL
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M I + PD YT IDG +K+G EA ++ + +
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHML------------MQNPGLTPDVVTYNIMIHGFCK 303
T +CLIDGLCK GR+ A +F + +P+ V Y +I G C
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+G+ KA+ DM +GL P+
Sbjct: 569 DGRIFKASKFFSDMRCSGLRPD 590
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 161/352 (45%), Gaps = 61/352 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--A 65
F +L R+ S FTPN+ F LI G + EA ++ K++V P + N +
Sbjct: 113 FNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDG 167
Query: 66 LVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
LV F+ M +G + P+VVT +IDG C+ G M+++ + P
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VV ++ L + ++ EA + M + PN TYNT+MDG
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG--------------- 272
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
YCK +V+ A+ L +EML +G+ + T+ L MA
Sbjct: 273 ------YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V P+ VY IDG K G + EA+ + S I H+ + + T + LI GLC + R++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D M+ G P+ VTYN +I G+CKEG +KA + M E G+EPN
Sbjct: 387 A-DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 121/269 (44%), Gaps = 48/269 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL + F PN VT+N+LI G C EG + +A + ++ +PN+ITF+TL
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ L+ EMV + G++ PDVV T +IDG KDG M + G+ P
Sbjct: 450 KAGKMEAAMGLYTEMVIK-GLL--PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V TL+ + D L KDG++ +A +++ + + T + +D C +
Sbjct: 507 NVFTLSCLIDGLCKDGRISDA---IKLFLAKTGTDTTGSKTNELD-----RSLCSPNHVM 558
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT----YNTLFMAIN------------ 214
Y LI G C D + A +M G+R D T F A++
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADIL 618
Query: 215 --NVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ P+S VY G ++G++ A++
Sbjct: 619 KMGIIPNSSVYRVLAKGYEESGYLKSALR 647
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 183/367 (49%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + +PN FN++I I E +F K+ PNV+T+ TL AL
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALC 551
Query: 68 ALNL-------FEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
L F +M+NE GV P+ V +++ GLC ++ F M++QG+RP
Sbjct: 552 KLGRVDDAVLQFNQMINE-GVT--PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRP 608
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D+V N + NL K+G++ EA L++ M+ + P+ +YNTL+DG + S+
Sbjct: 609 DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
G + ++ SYN L++GYCK +++A L REML +G+ TYNT+
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728
Query: 211 --------MAINNVPPDSH----VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ +N + Y+ +DG KN EA K+F ++ + L I T
Sbjct: 729 GRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITF 788
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +IDGL K GR + A D+F + N GL P VVTY ++ +EG ++ + L ME
Sbjct: 789 NIMIDGLFKGGRKEDAMDLFAAIPAN-GLVPSVVTYRLIAENLIEEGSLEELDCLFSVME 847
Query: 319 ETGLEPN 325
++G PN
Sbjct: 848 KSGTAPN 854
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 171/375 (45%), Gaps = 52/375 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
+GR GF G IL + + + + N L+KGLC R+ EA L +++ C V+
Sbjct: 97 IGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVV 156
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FM 103
++NTL A A L MV+ C PDVV+ +I+G +G
Sbjct: 157 SYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF 216
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
++ G+ PDVVT N + D L K +++ A + + M+++ V PN TYNT++DG
Sbjct: 217 LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEV 276
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG + +YN +I+G CK + V+ A + ++M+ G++ D TYNT+
Sbjct: 277 DMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTI 336
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M V PD+ YT IDGL K V A VF + +
Sbjct: 337 IDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396
Query: 252 VLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T NCLI G G+ ++ I M + L PDV TY +++ CK G+ +A
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHD--LEPDVFTYGLLLDYLCKNGKCNEA 454
Query: 311 NGLLLDMEETGLEPN 325
L M G++P+
Sbjct: 455 RSLFDSMIRKGIKPS 469
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 175/425 (41%), Gaps = 125/425 (29%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------AL-VALNL 71
P+ VT+N++I GLC + A +F+++ P+ +T+NT+ A+ A +
Sbjct: 293 PSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGV 352
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF---MMDQGMRP----------- 110
F++M+++ GV KPD +T T IIDGLCK +G M+D+G++P
Sbjct: 353 FQQMIDK-GV--KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHG 409
Query: 111 ------------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
DV T ++ D L K+GK EA L + MI++ + P+
Sbjct: 410 YLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPS 469
Query: 147 TCTYNTLMDGFA------------------------------------------------ 158
Y ++ G+
Sbjct: 470 VTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFI 529
Query: 159 -WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
+G +V +Y LI+ CK V+DAV +M++EG+ + +N+L +
Sbjct: 530 KMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVD 589
Query: 214 --------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+ PD + T + L K G V+EA ++ ++ + + N
Sbjct: 590 KWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYN 649
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
LIDG C R+ A + M + GL P++V+YN ++HG+CK G+ A L +M
Sbjct: 650 TLIDGHCFASRMDEAVKLLDG-MVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLR 708
Query: 320 TGLEP 324
G+ P
Sbjct: 709 KGVTP 713
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 58/318 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ ++ P+++++N+LI G C R+ EA +L + PN++++
Sbjct: 624 GRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSY 683
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL CK I + C M+ +G+ P V T N + +
Sbjct: 684 NTL--------------LHGYCK-----AGRIDNAYCLFREMLRKGVTPGVETYNTILNG 724
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + G+ EA L MI+ + CTY+ ++DGF CK+
Sbjct: 725 LFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGF---------------------CKN 763
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
++A + + + S ++ D T+N + IDGL+K G +AM
Sbjct: 764 NCFDEAFKIFQSLCSMDLQLDIITFNIM-----------------IDGLFKGGRKEDAMD 806
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F+AI + V ++ T + + L + G L+ D +M+ G P+ N +I
Sbjct: 807 LFAAIPANGLVPSVVTYRLIAENLIEEGSLE-ELDCLFSVMEKSGTAPNSHMLNALIRKL 865
Query: 302 CKEGQHQKANGLLLDMEE 319
G+ +A L ++E
Sbjct: 866 LDRGEIPRAGAYLSKLDE 883
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +Y+I+I +C+ +E + +L G R D N L
Sbjct: 83 DCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQL----------------- 125
Query: 227 IDGLYKNGFVLEAMKV-FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM--Q 283
+ GL V EAM V + C L + + N L+ GLC R + A ++ HM++ Q
Sbjct: 126 LKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQ 185
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +PDVV+YNI+I+GF EGQ KA L L+M G+ P+
Sbjct: 186 DSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPD 224
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 168/373 (45%), Gaps = 49/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++ +L + P++ T+NS+I GLC G + EA + ++ C PN +T+
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC--------KDGF--MMD 105
NTL L N EE V+ PDV T ++I GLC + F M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G PD T N++ D+L GK++EA +L+ M + TYNTL+DGF +K
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
G + +YN LI+G CK R VEDA L +M+ EG + D TYN+L
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N PD Y T I GL K G V A K+ +I L
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T N +I GL + + A ++F +++ PD V+Y I+ G C G ++A
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVD 668
Query: 313 LLLDMEETGLEPN 325
L+++ E G P
Sbjct: 669 FLVELLEKGFVPE 681
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 163/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+ TF ++++G EG + A R+ +++ F C + ++ N + AL
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
N +EM N+ G PD T +++GLCK G M+ +G PDV T N +
Sbjct: 280 NFIQEMSNQDGFF--PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L K G+++EA +L+ MI RD +PNT TYNTL+ SKG
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV ++N LI G C RN A+ L EM S+G D TYN L
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M ++ Y T IDG K EA ++F + H T N LIDGLCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A + M+M+ G PD TYN ++ FC+ G +KA ++ M G EP+
Sbjct: 518 SRRVEDAAQLMDQMIME--GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 154/359 (42%), Gaps = 55/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE-- 74
F+P + ++ L G + ++ + + C+ TF L + L +E
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 75 -----MVNEFGVICKPDVVTCTNIIDGLC----------KDGFMMDQGMRPDVVTLNVMT 119
M++EFG+ KPD +++ L M G++PDV T NV+
Sbjct: 139 SVVDWMIDEFGL--KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLI 196
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
L + ++ A +LE M + P+ T+ T+M G+ GC
Sbjct: 197 KALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCS 256
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTL--------------- 209
S N++++G+CK+ VEDA++ +EM ++ G D T+NTL
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 210 ---FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M PD + Y + I GL K G V EA++V + C T N LI LC
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K +++ A ++ +L + G+ PDV T+N +I G C H+ A L +M G EP+
Sbjct: 377 KENQVEEATELARVLT-SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 173/375 (46%), Gaps = 54/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G ++ +L F ++ T+NSLI GLC G I EA + + C+PN +T+
Sbjct: 316 GHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTY 375
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
NTL + A ++ GV+ PDV T ++I GLC M
Sbjct: 376 NTLIGTLCKENHVEAATELARVLTSKGVL--PDVCTFNSLIQGLCLTSNREIAMELFEEM 433
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
++G PD T +++ ++L + +++EA LL+ M N YNTL+DG ++
Sbjct: 434 KEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRV 493
Query: 163 GCRHDVY-------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G D++ +YN LING CK + VE+A L +M+ EG++ D TY T+
Sbjct: 494 GDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTM 553
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M +N PD Y T I GL K G V A K+ ++
Sbjct: 554 LKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGM 613
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKA 310
VLT + N +I LCK R K A +F +M+ G PDV+TY I+ G C G Q+A
Sbjct: 614 VLTPQAYNPVIQALCKRKRTKEAMRLFREMMEK-GDPPDVITYKIVFRGLCNGGGPIQEA 672
Query: 311 NGLLLDMEETGLEPN 325
++M E G+ P
Sbjct: 673 VDFTVEMLEKGILPE 687
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 154/345 (44%), Gaps = 76/345 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V+ N L+ GLC EGRI EA R + FC P+ +TFN L
Sbjct: 270 VSVNVLVNGLCKEGRIEEALRFIYEEEGFC--PDQVTFNAL------------------- 308
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
++GLC+ G FM+++G DV T N + L K G+++EA
Sbjct: 309 ----------VNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVE 358
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
+L M+ RD PNT TYNTL+ SKG DV ++N LI G C
Sbjct: 359 ILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLC 418
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
N E A+ L EM +G D TY+ L M ++ +
Sbjct: 419 LTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVV 478
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HM 280
VY T IDGL KN V +A +F + + T N LI+GLCK R++ A + M
Sbjct: 479 VYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQM 538
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M+ GL PD TY M+ FC++G ++A ++ +M G EP+
Sbjct: 539 IME--GLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPD 581
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 112/255 (43%), Gaps = 35/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+ + PDV T N++ L K ++ A +LE M + P+ T+ TLM GF +
Sbjct: 190 MVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEAD 249
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC S N+L+NG CK+ +E+A+ E EG D T+N
Sbjct: 250 VEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNA 307
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L FM D + Y + I GL K G + EA+++ + +
Sbjct: 308 LVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD 367
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C T N LI LCK ++ A ++ +L G+ PDV T+N +I G C + A
Sbjct: 368 CEPNTVTYNTLIGTLCKENHVEAATELARVLTSK-GVLPDVCTFNSLIQGLCLTSNREIA 426
Query: 311 NGLLLDMEETGLEPN 325
L +M+E G +P+
Sbjct: 427 MELFEEMKEKGCDPD 441
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 41/219 (18%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
D ++PD NV L K K++ L M+ V P
Sbjct: 157 DFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPP------------------- 197
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV ++NILI CK + A+ + +M + G+R PD +T
Sbjct: 198 --DVSTFNILIRALCKAHQLRPAILMLEDMPNYGLR-----------------PDEKTFT 238
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T + G + V A+++ + C LT + N L++GLCK GR++ A + +
Sbjct: 239 TLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIY---EE 295
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G PD VT+N +++G C+ G ++ ++ M E G E
Sbjct: 296 EGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFE 334
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 18/171 (10%)
Query: 157 FAWWSKGCRHDVYS--YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
F W S + + ++ L+ + + + ++L R+M S I D +T+ +F+
Sbjct: 79 FQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTF-LIFLETY 137
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
H + L + F ++ F N + L K +LK+
Sbjct: 138 ATSHHLHAEINPLFLLMERDFAVKPDTRFY--------------NVALSLLVKANKLKLV 183
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ H M + PDV T+NI+I CK Q + A +L DM GL P+
Sbjct: 184 -ETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPD 233
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 175/350 (50%), Gaps = 48/350 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------A 65
+++ F N V++ +LI GLC G+ A ++++ P+V+ +NT+
Sbjct: 107 KVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDK 166
Query: 66 LV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVV 113
LV A NL+ EMV + IC P VVT +I GLC KD M+ + + P V
Sbjct: 167 LVNDAFNLYFEMVAK--RIC-PSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVY 223
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
T +++ D K+GKM+EA + VM++ DV PN TYN+LMDG + + +N
Sbjct: 224 TFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNV-VKKAKSIFNT 282
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
+I + V++A++L EM + I D YN+L M
Sbjct: 283 MI------KMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRG 336
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PPD Y + +D L KN V +A+++ + + + ++ T N LI+GLCK GRLK A
Sbjct: 337 QPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAE 396
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L+ G DV TYN MI GFCK+G + ++ M+++G P+
Sbjct: 397 KVFEDLLVK-GYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPD 445
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 50/250 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + LL ++++ P + TF+ LI C EG++ EA +F + PN++T
Sbjct: 200 MAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVT 259
Query: 61 FNTL----ALV-------------------ALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+N+L LV A+NLFEEM F I PD+V ++IDGL
Sbjct: 260 YNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEM--HFKQIY-PDMVIYNSLIDGL 316
Query: 98 CKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
CK G M +G PD+ T N + D L K+ +++A LL + + + P+
Sbjct: 317 CKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSV 376
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
CTYN L++G KG DVY+YN +I G+CK ++ +++ +
Sbjct: 377 CTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSK 436
Query: 194 MLSEGIRADA 203
M G DA
Sbjct: 437 MKDSGCSPDA 446
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPD 219
G ++ + +ILIN Y + + S+ +L +G +DA T+ TL + +
Sbjct: 42 GLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKA 101
Query: 220 SHV---------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
H Y T I+GL K G A++ I + N +IDG
Sbjct: 102 LHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDG 161
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK + A++++ ++ + P VVTYN +I G C Q + A GLL M + P
Sbjct: 162 LCKDKLVNDAFNLYFEMVAKR-ICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINP 220
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 19/177 (10%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FMAI 213
++ + ++ K + VSL R+M G+ ++ T + L F
Sbjct: 11 SIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVF 70
Query: 214 NNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
N+ D+ +TT I GL G + +A+ + L + LI+GLCK+
Sbjct: 71 ANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKV 130
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + A + F + + PDVV YN +I G CK+ A L +M + P+
Sbjct: 131 GQTRAALE-FLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPS 186
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 22/158 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +G + P++ T+NSL+ LC + +A L KL P+V T+
Sbjct: 320 GRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTY 379
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A +FE+++ + DV T +I G CK G
Sbjct: 380 NILINGLCKSGRLKDAEKVFEDLLVKG---YNTDVYTYNAMIKGFCKKGLFDETLAMVSK 436
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
M D G PD ++ +L G+ ++A E++++
Sbjct: 437 MKDSGCSPDAKNCEIIIRSLFDKGENDKAGKFREMIVR 474
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 51/341 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P+ T+N LI+ LC G +L+A +F + C P+V+T++ L A+
Sbjct: 156 FAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAV 215
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM ++ C+PD+VT +I+ +C G + G +PD VT +
Sbjct: 216 VLLDEMRSKG---CEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVL 272
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWS---------KGCR 165
+L + EEA+ LL M D P+ T+N ++ GF + GC
Sbjct: 273 KSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCT 332
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +Y+ +++G CK+R V++A+ L +E+L+E M N PD + T
Sbjct: 333 PDIITYSSIMDGLCKERRVDEAIKLLKELLAE-------------MVSKNCIPDQVTFNT 379
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG-LCKIGRLKIAWDIFHMLMQN 284
I L + G A+KV + H C+ I T NC++DG LCK + + A D+ ++++ N
Sbjct: 380 IITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSN 439
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD TY + G +E + ++A G+ ++ GL P+
Sbjct: 440 -GLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPD 479
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 155/343 (45%), Gaps = 53/343 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
VLL + P++VT+N LI +C++G + EA ++ L + C P+ +T+ +
Sbjct: 214 AVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLK 273
Query: 65 ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+L + +EE + F C PD VT +I LC+ GF M + G P
Sbjct: 274 SLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTP 333
Query: 111 DVVTLNVMTDNLSKDGKMEEA----NCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
D++T + + D L K+ +++EA LL M+ ++ P+ T+NT++
Sbjct: 334 DIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRA 393
Query: 158 -----AWWSKGCRHDVYSYNILINGY-CKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
GC D+ +YN +++G+ CK E+A+ L M+S G+ D TTY +L
Sbjct: 394 IKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAF 453
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
GL + + A+ +F + N ++ GLCK R
Sbjct: 454 -----------------GLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRT 496
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+A D F ++ N G PD TY I++ G EG ++A LL
Sbjct: 497 DLAIDFFAYMVSN-GCMPDESTYIILVEGIAYEGFLEEAKELL 538
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 171/374 (45%), Gaps = 58/374 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL ++ C P VT+NSLI GLC R EA L +++ C P++ T+
Sbjct: 95 GRVDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTY 153
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
TL + AL +FE++V G +PDVVT + +IDGLCK+G + +
Sbjct: 154 TTLITGFCKSKKSDDALRVFEQLVAR-GF--RPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
P+ VT N + + GKM+EA LLE M + +P+ TY TLM+GF +
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG DV ++ L++G C++ + DAV + EM + TYN
Sbjct: 271 RLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYN 330
Query: 208 TLF----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
T+ + + PP+ + I GL K EAM++ +C
Sbjct: 331 TILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ +IDGLC+ ++ A ++ +++ PG P+ +TY+ +I G C G +A
Sbjct: 391 NPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRAR 450
Query: 312 GLLLDMEETGLEPN 325
G + E G PN
Sbjct: 451 GYI----EKGCVPN 460
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 169/391 (43%), Gaps = 91/391 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFC-- 53
R + LG+++ F P++ T+ ++I LC E R+ EA + +++ NV
Sbjct: 26 RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYT 85
Query: 54 -------------------------CDPNVITFNTL---------ALVALNLFEEMVNEF 79
C P +T+N+L A A +L EEMV
Sbjct: 86 VLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 145
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
C PD+ T T +I G CK D +G RPDVVT + + D L K+G+++
Sbjct: 146 ---CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202
Query: 130 EANCLLEVMIQR-DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
EA L MI+ PNT TYN+L+ GF K G DV +Y L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+NG+CK ++DA L +M +G+ PD +T+ +DGL +
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGL-----------------TPDVVTFTSLMDGLCREN 305
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A+ + + C T+ T N ++DG C+ +L+ A M P P+VV++
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP---PNVVSF 362
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NIMI G CK + +A L+ + P+
Sbjct: 363 NIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 161/337 (47%), Gaps = 58/337 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLAL---------VA 68
F P++VT++ LI GLC EGR+ EA LF ++ C PN +T+N+L A
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVM 118
+NL E M E G PDVVT T +++G CK D + M +G+ PDVVT +
Sbjct: 241 MNLLERMA-ETG--SSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSL 297
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------GCRH 166
D L ++ ++ +A +L M ++ +P TYNT++DG+ ++ C
Sbjct: 298 MDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPP 357
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V S+NI+I G CK +A+ E++ E R PD +YTT
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAM----ELVEEARR-------------RRCNPDVVMYTTV 400
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL + V EA +V+ + C+ T + LI GLC G L A
Sbjct: 401 IDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIE-----K 455
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G P++ TYN++I F K + + A LL DM + G
Sbjct: 456 GCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 124/266 (46%), Gaps = 40/266 (15%)
Query: 83 CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C D VT T++I GLCK G M+ +G PDV T + L + ++ EA
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYSYNILINGYC 179
LE M R++ PN TY L+DG + K C +YN LI+G C
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K +A L EM+ G PD YTT I G K+ +A
Sbjct: 127 KAERASEAYDLLEEMVYSG-----------------CIPDIFTYTTLITGFCKSKKSDDA 169
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++VF + + T +CLIDGLCK GRLK A D+F ++++ P+ VTYN +I
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFC+ G+ +A LL M ETG P+
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPD 255
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 146/325 (44%), Gaps = 61/325 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+ + VT+ SLI+GLC R+ +A K+ P+V T+ + A
Sbjct: 8 SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDN 121
EEM N P+VVT T +IDGLCK G + M + P VT N +
Sbjct: 68 FLEEMANRN---LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K + EA LLE M+ GC D+++Y LI G+CK
Sbjct: 125 LCKAERASEAYDLLEEMVY---------------------SGCIPDIFTYTTLITGFCKS 163
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ +DA+ + ++++ G R D TY+ L IDGL K G + EA+
Sbjct: 164 KKSDDALRVFEQLVARGFRPDVVTYSCL-----------------IDGLCKEGRLKEAID 206
Query: 242 VFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+F I + C+ T N LI G C++G++ A ++ M G +PDVVTY +++G
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER-MAETGSSPDVVTYTTLMNG 265
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FCK + A LL M GL P+
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPD 290
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+ C D +Y LI G CK + +E A+ +M+S+G D TY +
Sbjct: 4 TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
MA N+ P+ YT IDGL K G V EA+ + S + KCV T T N LI
Sbjct: 64 EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLI 122
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLCK R A+D+ ++ + G PD+ TY +I GFCK + A + + G
Sbjct: 123 SGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181
Query: 323 EPN 325
P+
Sbjct: 182 RPD 184
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 29/225 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R + LL ++ TP++VTF SL+ GLC E R+ +A + ++ C P V T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGM 108
+NT+ N EE M+ E C P+VV+ +I GLCK ++++
Sbjct: 329 YNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386
Query: 109 R----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGF------ 157
R PDVV + D L ++ K++EA + M++ PN+ TY+TL+ G
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGML 446
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ KGC ++ +YN+LI+ + K EDA L +M+ G
Sbjct: 447 DRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 131/298 (43%), Gaps = 55/298 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ LL R+ + +P++VT+ +L+ G C R+ +A L ++ P+V+T
Sbjct: 234 MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-------DGFMMDQ- 106
F +L L N + V+ G + C P V T I+DG C+ FM+++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
P+VV+ N+M L K + EA L+E +R NP
Sbjct: 354 DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNP--------------------- 392
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV Y +I+G C+++ V++A + R+ML E P+S Y+T
Sbjct: 393 DVVMYTTVIDGLCREKKVDEACRVYRKMLEEP----------------GCLPNSITYSTL 436
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I GL G +L+ + + G CV I T N LID K R + A ++ ++Q
Sbjct: 437 ITGLCNAG-MLDRARGYIEKG---CVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 165/361 (45%), Gaps = 50/361 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
LL ++L + N T N I+GLC +GR+ EA L +++ + P+V+T+NTL L
Sbjct: 232 ALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVA-PDVVTYNTLMRGL 290
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDV 112
+ +E G + C PD T IIDG CK G + + +G PD
Sbjct: 291 CKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDR 350
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW------------ 160
VT + + L +G +E A L +D+ P+ YN+L+ G
Sbjct: 351 VTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNE 410
Query: 161 --SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
+GC D+++YNI+ING CK N+ DA + + + +G D T+NTL
Sbjct: 411 MVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLK 470
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + PD Y + ++GL K G E + F + C T N
Sbjct: 471 LDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNI 530
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI+ CKI +L+ A + + Q+ GL PD V++N +IHGFC+ G A L ++E
Sbjct: 531 LIENFCKINQLEEASGVIVRMCQD-GLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEK 589
Query: 321 G 321
G
Sbjct: 590 G 590
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 156/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + F P+ VT+ SLI GLC EG I A LF + P+++ +N+L
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLC 396
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL + EMV E C PD+ T II+GLCK G + D +G P
Sbjct: 397 RQGLILHALQVMNEMVEEG---CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLP 453
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DV T N + D K K++ A L+E M + P+ TYN++++G K
Sbjct: 454 DVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETF 513
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GCR + +YNILI +CK +E+A + M +G+ DA ++NTL
Sbjct: 514 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTL------- 566
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G +NG + A +F + T +T N LI +++A
Sbjct: 567 ----------IHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 616
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ G PD+ TY I++ G CK +A L +M G P+
Sbjct: 617 IFGEMISK-GYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPS 664
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 161/416 (38%), Gaps = 124/416 (29%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL--------------------- 66
I+ GR+ A F+++++F C P +N + AL
Sbjct: 78 IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137
Query: 67 ---------------------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--- 102
VAL L + +E G KP CT ++ GL G
Sbjct: 138 APDARTHTVRLKSFCLTGRPHVALRLLRSL-SERGCDAKP-AAYCT-VVRGLYAHGHGYN 194
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD------------- 142
M+ + + PDV T N + L + G + E+ LL +++R
Sbjct: 195 ARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIR 254
Query: 143 ---------------------VNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
V P+ TYNTLM G SK GC D
Sbjct: 255 GLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPD 314
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
++YN +I+GYCK +++A L ++ + +G D TY +L +
Sbjct: 315 DFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFN 374
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++ PD VY + + GL + G +L A++V + + C I T N +I+GLCK+G
Sbjct: 375 EAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMG 434
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + + + G PDV T+N +I G+CK + A L+ M G+ P+
Sbjct: 435 NISDAAVVMNDAIVK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 149/324 (45%), Gaps = 46/324 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S V++ ++ + P++ TFN+LI G C ++ A +L +++ + P+VIT
Sbjct: 433 MGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVIT 492
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF-- 102
+N++ A FEEM+ + C+P+ +T +I+ CK G
Sbjct: 493 YNSVLNGLCKAGKAKEVNETFEEMILKG---CRPNAITYNILIENFCKINQLEEASGVIV 549
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M G+ PD V+ N + ++G ++ A L + + ++ + T+N L+ ++
Sbjct: 550 RMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 609
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKG + D+Y+Y IL++G CK NV+ A + EM+S+G T+
Sbjct: 610 NMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFG 669
Query: 208 TL--FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ +A+N+ ++ I + + G V E + + + I L++ L
Sbjct: 670 RMLNLLAMNHRVSEA---VAIIHIMVRMGVVPEVVDTILSTDKKE----IAAPKILVEEL 722
Query: 266 CKIGRLKI-AWDIFHMLMQNPGLT 288
K G + A+++ H +++ LT
Sbjct: 723 MKKGHISYRAYEVLHEGVRDNKLT 746
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDS--HVYTTYIDGLYKNGFVLEAMKVFSAI 246
+L RE++S G D L A +++ PDS +Y I + G + A+ F +
Sbjct: 40 ALIRELVSAGRLDDVDA--ALASARSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFERM 97
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
C N ++D L A ++ + M G+ PD T+ + + FC G+
Sbjct: 98 DLFACPPAAPAYNAIMDALVNAAYHDQAHKVY-VRMLAAGVAPDARTHTVRLKSFCLTGR 156
Query: 307 HQKANGLLLDMEETG 321
A LL + E G
Sbjct: 157 PHVALRLLRSLSERG 171
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 58/376 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA L+ + + + ++ T+ LI GLC G+ EA +K+ +PNV+
Sbjct: 162 VGRA---VELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVV 218
Query: 61 FNT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++T L AL L EM G KP++VT T +I GLC G
Sbjct: 219 YSTVMDGLCKDGLVSEALGLCLEMS---GKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLD 275
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW- 160
MM G+ PD+ +LN++ D L K+GK+ +A ++ MI P+ TYN+L+D +
Sbjct: 276 EMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQN 335
Query: 161 -------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S+GC D+ +Y LI+G+CK +N+ A+ L EM+ G D T+
Sbjct: 336 QMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWT 395
Query: 208 TLF---------MAINNVPPDSHVY---------TTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL +A + + H Y +DGL K+ + EA+ +F A+
Sbjct: 396 TLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKS 455
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
L I + ++DG+C G+L A ++F L GL +V Y IMI+GF K+G K
Sbjct: 456 NLDLNIVIYSIILDGMCSAGKLNTALELFSCL-PAKGLQINVYAYTIMINGFAKQGLLDK 514
Query: 310 ANGLLLDMEETGLEPN 325
A LL +MEE G P+
Sbjct: 515 AEDLLSNMEENGCMPD 530
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G++PD LNV+ ++L + +L M++ + P+ T+ L++G
Sbjct: 106 GIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRA 165
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G R DV +Y +LING CK +AV R+M
Sbjct: 166 VELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEER--------------- 210
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N P+ VY+T +DGL K+G V EA+ + + + T CLI GLC GR K
Sbjct: 211 --NWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWK 268
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + +M+ G+ PD+ + NI++ CKEG+ +A ++ M G P+
Sbjct: 269 EAGSLLDEMMKM-GVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPD 320
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++G +++ P++ T+NSLI C + ++ EA R+F+ + C P+++ +
Sbjct: 300 GKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAY 359
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+L A++L +EM+ V PDVVT T +I G C+ G
Sbjct: 360 TSLIHGWCKIKNINKAMHLLDEMIK---VGFTPDVVTWTTLIGGFCQVGRPLAAKELFLN 416
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M G P++ T ++ D L K + EA L M + +++ N Y+ ++DG
Sbjct: 417 MHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGK 476
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + +VY+Y I+ING+ K ++ A L M G D+ TYN
Sbjct: 477 LNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNV 536
Query: 209 LFMAI 213
+
Sbjct: 537 FVQGL 541
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 36/218 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++V + SLI G C I +A L ++ P+V+T+ TL L A L
Sbjct: 354 PDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKEL 413
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F M +++G + P++ TC I+DGLCK M + ++V +++ D
Sbjct: 414 FLNM-HKYGQV--PNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDG 470
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
+ GK+ A L + + + N Y +++GFA GC D
Sbjct: 471 MCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPD 530
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+YN+ + G +R + ++ M +G DATT
Sbjct: 531 SCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATT 568
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 170/357 (47%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL------ 71
+PN FN + + I EA +F K+ P+V++F L AL L
Sbjct: 333 SPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVL 392
Query: 72 -FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
F +M+NE GV P++ ++++ GLC G ++DQG+ D V N +
Sbjct: 393 QFNQMINE-GVT--PNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMC 449
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL +G++ EA L+++MI+ V PN +YNTL+ G S G +
Sbjct: 450 NLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKP 509
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+ ++Y IL+ GYCK R V+DA SL REML +G+ TYNT+ +
Sbjct: 510 NEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELY 569
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ D + Y ++GL KN FV EA K+F + + L T N +I L K
Sbjct: 570 LNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKG 629
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + A D+F + GL PDVVTY ++ +EG + +GL ME++G PN
Sbjct: 630 GRKEDAMDLFATI-SAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPN 685
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 157/364 (43%), Gaps = 71/364 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR GF G IL + + N++ + L+KGLC R+ EA
Sbjct: 103 MGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEAT----------------- 145
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
++ ++EFG C PDVV +I+G ++G MMDQG+ P
Sbjct: 146 ---------DILLLRMSEFG--CPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPP 194
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK----- 162
+VVT + D L K ++ A + + MI R V P+ TYN L+ G+ W +
Sbjct: 195 NVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQML 254
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
G D +Y +L++ CK+ +A M +GI+ D Y L
Sbjct: 255 EEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATK 314
Query: 210 -----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N V P+ ++ K + EAM +F+ + + +
Sbjct: 315 GALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSF 374
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
LID LCK+GR+ A F+ ++ N G+TP++ ++ +++G C G+ +KA L ++
Sbjct: 375 GALIDALCKLGRVDDAVLQFNQMI-NEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVL 433
Query: 319 ETGL 322
+ G+
Sbjct: 434 DQGI 437
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 135/326 (41%), Gaps = 63/326 (19%)
Query: 41 EAARLFKKLNVFCCDP-NVITFNTLALVA------------LNLFEEMVNEFGVICKPDV 87
EA +LF +L + C P +V FN L V ++LF M E P+
Sbjct: 32 EALKLFDEL-LHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNA 90
Query: 88 VTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
T + +I C+ G ++ G R +V+ ++ + L +++EA ++
Sbjct: 91 CTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEAT---DI 147
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
++ R M F GC DV +YN +ING+ ++ VE A +L EM+ +
Sbjct: 148 LLLR------------MSEF-----GCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQ 190
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
GI + TY T+ M V PD+ Y I G G E
Sbjct: 191 GIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEV 250
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+++ + H T L+D LCK GR + A F + + G+ PDV Y I++H
Sbjct: 251 VQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRK-GIKPDVAIYAILLH 309
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +G + + L M G+ PN
Sbjct: 310 GYATKGALSEMHSFLDLMVGNGVSPN 335
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + L +LM TP + T+N+++ GL GR EA L+ + ++ T+N
Sbjct: 526 RVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYN 585
Query: 63 TL--ALVALNLFEEMVNEFGVICKPD----VVTCTNIIDGLCKDGFMMDQ---------- 106
+ L N +E F +C D VT +I L K G D
Sbjct: 586 IILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAY 645
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+ PDVVT ++ +NL ++G + E + L M + PN+ N L+ R
Sbjct: 646 GLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRA 705
Query: 167 DVYSYNI 173
VY Y +
Sbjct: 706 GVYLYKL 712
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL ++ + PN T+ L++G C R+ +A LF+++ + P V T+
Sbjct: 490 GRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATY 549
Query: 62 NTL--ALVALNLFEEM----VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP----- 110
NT+ L F E +N K D+ T I++GLCK+ F +D+ +
Sbjct: 550 NTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNF-VDEAFKMFRRLC 608
Query: 111 ------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
D VT N+M L K G+ E+A L + + P+ TY + +
Sbjct: 609 SKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAE 659
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 175/373 (46%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PDVVT N + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +Y++L++ CK+ +A + M G++ + TTY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD +V++ I G V +AM VFS +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQ 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + GL+P + YN +IHG C + ++
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 460 AEELILEMLDRGI 472
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 165/363 (45%), Gaps = 55/363 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + P+ F+ LI +G++ +A +F K+ +PN +T+ + +
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+ FE+M++E P + ++I GLC M+D+G+
Sbjct: 418 KSGRVEDAMLYFEQMIDEG---LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + D+ K+G++ E+ L E+M++ V PN TYNTL++G+ K
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + + +Y+ LINGYCK +EDA+ L +EM S G+ D TYN + +
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN +A+++F + L T
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +ID L K+GR A D+F N GL P+ TY +M +G ++ + L L ME
Sbjct: 655 NIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 713
Query: 319 ETG 321
+ G
Sbjct: 714 DNG 716
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++ ++I G EG +A + ++ P+V+T+N++ AL ++ +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT +++ D L K
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P TY TL+ G+A G D Y
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
++ILI Y V+ A+ + +M +G+ +A TY + M
Sbjct: 374 FSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 213 INNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P + VY + I GL N + + + C+ TI N +ID CK GR+
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI-FFNSIIDSHCKEGRV 492
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F LM G+ P+V+TYN +I+G+C G+ +A LL M GL+PN
Sbjct: 493 IESEKLFE-LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 55/354 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +P+V+T++ L + A +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M KP++ T ++ G G M+ G+ PD +++
Sbjct: 324 FDSMTKRG---LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHD 167
+ GK+++A + M Q+ +NPN TY ++ D ++ + G
Sbjct: 381 YANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
YN LI+G C E A L EML GI + +N++
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V P+ Y T I+G G + EAMK+ S + + T + LI+G CKI
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
R++ A +F M++ G++PD++TYNI++ G + + A L + + E+G +
Sbjct: 561 RMEDALVLFKE-MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 37/266 (13%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM 154
G G ++ +G R D + + L D + +A + +L M + PN +YN L+
Sbjct: 106 GFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILL 165
Query: 155 DGFAWWSK-----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
G ++ G DV SY +ING+ K+ + + A S EML
Sbjct: 166 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
GI D TYN++ A+ N V PD Y + + G +G EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + T + L+D LCK GR A IF M GL P++ TY ++
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS-MTKRGLKPEITTYGTLLQ 344
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +G + +GLL M G+ P+
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPD 370
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 167 DVYSYNILI-----------------------------------NGYCKDRNVEDAVSLC 191
D+ +Y ILI G C D+ DA+ +
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 192 -REMLSEGIRADATTYNTLFMAI---------------------NNVPPDSHVYTTYIDG 229
R M G + +YN L + PPD YTT I+G
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+K G +A + + + + + T N +I LCK + A ++ + +++N G+ P
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMP 264
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D +TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 22/223 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN VT+++LI G C R+ +A LFK++ P++IT+
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG- 107
N T A + E G + ++ T I+ GLCK D M Q
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGT--QIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Query: 108 ----MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++ + T N+M D L K G+ +EA L + PN TY + +
Sbjct: 643 CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLL 702
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
D ++ NG D + + + RE+L G A TY
Sbjct: 703 EELDQLFLSMEDNGCTVDSGMLNFI--VRELLQRGEITRAGTY 743
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 171/374 (45%), Gaps = 58/374 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL ++ C P VT+NSLI GLC R EA L +++ C P++ T+
Sbjct: 95 GRVDEAVALLSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTY 153
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
TL + AL +FE++V G +PDVVT + +IDGLCK+G + +
Sbjct: 154 TTLITGFCKSKKSDDALRVFEQLVAR-GF--RPDVVTYSCLIDGLCKEGRLKEAIDLFGR 210
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
P+ VT N + + GKM+EA LLE M + +P+ TY TLM+GF +
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG DV ++ L++G C++ + DAV + EM + TYN
Sbjct: 271 RLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYN 330
Query: 208 TLF----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
T+ + + PP+ + I GL K EAM++ +C
Sbjct: 331 TILDGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRC 390
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ +IDGLC+ ++ A ++ +++ PG P+ +TY+ ++ G C G +A
Sbjct: 391 NPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRAR 450
Query: 312 GLLLDMEETGLEPN 325
G + E G PN
Sbjct: 451 GYI----EKGCVPN 460
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 169/391 (43%), Gaps = 91/391 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFC-- 53
R + LG+++ F P++ T+ ++I LC E R+ EA + +++ NV
Sbjct: 26 RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYT 85
Query: 54 -------------------------CDPNVITFNTL---------ALVALNLFEEMVNEF 79
C P +T+N+L A A +L EEMV
Sbjct: 86 VLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 145
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
C PD+ T T +I G CK D +G RPDVVT + + D L K+G+++
Sbjct: 146 ---CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLK 202
Query: 130 EANCLLEVMIQR-DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
EA L MI+ PNT TYN+L+ GF K G DV +Y L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+NG+CK ++DA L +M +G+ PD +T+ +DGL +
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGL-----------------TPDVVTFTSLMDGLCREN 305
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A+ + + C T+ T N ++DG C+ +L+ A M P P+VV++
Sbjct: 306 RLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP---PNVVSF 362
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NIMI G CK + +A L+ + P+
Sbjct: 363 NIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 124/266 (46%), Gaps = 40/266 (15%)
Query: 83 CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C D VT T++I GLCK G M+ +G PDV T + L + ++ EA
Sbjct: 7 CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYSYNILINGYC 179
LE M R++ PN TY L+DG + K C +YN LI+G C
Sbjct: 67 KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLC 126
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K +A L EM+ G PD YTT I G K+ +A
Sbjct: 127 KAERASEAYDLLEEMVYSG-----------------CIPDIFTYTTLITGFCKSKKSDDA 169
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++VF + + T +CLIDGLCK GRLK A D+F ++++ P+ VTYN +I
Sbjct: 170 LRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 229
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFC+ G+ +A LL M ETG P+
Sbjct: 230 GFCRMGKMDEAMNLLERMAETGSSPD 255
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 146/325 (44%), Gaps = 61/325 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+ + VT+ SLI+GLC R+ +A K+ P+V T+ + A
Sbjct: 8 SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDN 121
EEM N P+VVT T +IDGLCK G + M + P VT N +
Sbjct: 68 FLEEMANRN---LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K + EA LLE M+ GC D+++Y LI G+CK
Sbjct: 125 LCKAERASEAYDLLEEMVY---------------------SGCIPDIFTYTTLITGFCKS 163
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ +DA+ + ++++ G R D TY+ L IDGL K G + EA+
Sbjct: 164 KKSDDALRVFEQLVARGFRPDVVTYSCL-----------------IDGLCKEGRLKEAID 206
Query: 242 VFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+F I + C+ T N LI G C++G++ A ++ M G +PDVVTY +++G
Sbjct: 207 LFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER-MAETGSSPDVVTYTTLMNG 265
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FCK + A LL M GL P+
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPD 290
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+ C D +Y LI G CK + +E A+ +M+S+G D TY +
Sbjct: 4 TNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLH 63
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
MA N+ P+ YT IDGL K G V EA+ + S + KCV T T N LI
Sbjct: 64 EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLI 122
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLCK R A+D+ ++ + G PD+ TY +I GFCK + A + + G
Sbjct: 123 SGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181
Query: 323 EPN 325
P+
Sbjct: 182 RPD 184
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 29/225 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R + LL ++ TP++VTF SL+ GLC E R+ +A + ++ C P V T
Sbjct: 269 LARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 328
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGM 108
+NT+ N EE M+ E C P+VV+ +I GLCK ++++
Sbjct: 329 YNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386
Query: 109 R----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGF------ 157
R PDVV + D L ++ K++EA + M++ PN+ TY+TL+ G
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGML 446
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ KGC ++ +YN+LI+ + K EDA L +M+ G
Sbjct: 447 DRARGYIEKGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRG 491
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 55/298 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ LL R+ + +P++VT+ +L+ G C R+ +A L ++ P+V+T
Sbjct: 234 MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-------DGFMMDQ- 106
F +L L N + V+ G + C P V T I+DG C+ FM+++
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
P+VV+ N+M L K + EA L+E +R NP
Sbjct: 354 DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNP--------------------- 392
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV Y +I+G C+++ V++A + R+ML E P+S Y+T
Sbjct: 393 DVVMYTTVIDGLCREKKVDEACRVYRKMLEEP----------------GCLPNSITYSTL 436
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ GL G +L+ + + G CV I T N LID K R + A ++ ++Q
Sbjct: 437 VTGLCNAG-MLDRARGYIEKG---CVPNIGTYNLLIDAFRKANRDEDARELLDDMVQR 490
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/355 (32%), Positives = 161/355 (45%), Gaps = 53/355 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G A ++ +L+ P++ T+NSLI GLC G I EA ++ ++ C PN +T
Sbjct: 321 IGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVT 380
Query: 61 FNTLALVALNLFEEMVNEFGVICK--------PDVVTCTNIIDGLC--------KDGF-- 102
+N A+++ E V+E I + PDV T ++I GLC D F
Sbjct: 381 YN--AIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEE 438
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G RPD T N++ D+L K+EEA LL+ M N YNTL+DGF +
Sbjct: 439 MKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKR 498
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +YN LI+G CK + VEDA L +M+ EG+R D TYN+
Sbjct: 499 IEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD Y T I GL K G V A ++ +I
Sbjct: 559 LLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
VLT N +I L K R A +F ++ + PD +TY I+ G C G
Sbjct: 619 MVLTPHAYNPVIQALFKRNRTHEAMRLFREML-DKSEPPDAITYKIVYRGLCNGG 672
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 55/350 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
VT N LI G C +GRI +A ++ P+ T+NTL A A+ + +
Sbjct: 274 VTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDA 333
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
M+ G + PD+ T ++I GLCK G M+ + P+ VT N + +L K
Sbjct: 334 ML--LGGL-DPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK 390
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
+ +++EA + ++ + + P+ CT+N+L+ G S KGCR D ++
Sbjct: 391 ENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFT 450
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YN+LI+ C R +E+A++L +EM G + YNTL M
Sbjct: 451 YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEME 510
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ V DS Y T IDGL K+ V +A ++ + T N L+ CK G +K
Sbjct: 511 LQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIK 570
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A DI M + G PD+VTY +I G CK G+ Q A+ LL ++ G+
Sbjct: 571 KAADIVQT-MTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 50/356 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC--DPNVITFNTLALVALNLFEEMV 76
F P+ + +++ L G R+ +++ + C D + + L++E+V
Sbjct: 93 FVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVV 152
Query: 77 NEFGVI-----CKPDV----VTCTNIIDG------LCKDGFMMDQGMRPDVVTLNVMTDN 121
V+ KPD V ++D M+ + +R DV T N++
Sbjct: 153 GIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA 212
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K ++ A ++E M ++P+ T+ T+M G+ GC
Sbjct: 213 LCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCT 272
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ N+LING+CK ++ A+S +E +SEG R D TYNTL
Sbjct: 273 DVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVD 332
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + + PD + Y + I GL K G + EA+K+ + + C T N +I LCK
Sbjct: 333 AMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKEN 392
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A +I +L G+ PDV T+N +I G C H+ A L +M+ G P+
Sbjct: 393 RVDEATEIARLLTSK-GILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPD 447
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 175/382 (45%), Gaps = 66/382 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L ++ P +V + LI+GLC E RI EA +F+ + PN+ T+NT+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMDQ---G 107
AL L+ EM+ + G++ P+VVT +IDGLCK F++D G
Sbjct: 272 GYCKIAHVKKALELYXEMLGD-GLL--PNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P++ N + D K G + EA L + + ++ P+ TY+ L+ G
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
KG + +YN LI+GYCK+ N+E A+ +C +M +GI + T++TL
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M I + PD YT IDG +K+G EA ++ + +
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHML------------MQNPGLTPDVVTYNIMIHGFCK 303
T +CLIDGLCK GR+ A +F + +P+ V Y +I G C
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+G+ KA+ DM +GL P+
Sbjct: 569 DGRIFKASKFFSDMRCSGLRPD 590
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 160/352 (45%), Gaps = 61/352 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--A 65
F +L R+ S FTPN+ F LI G + EA ++ K++V P + N +
Sbjct: 113 FNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDG 167
Query: 66 LVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
LV F+ M +G + P+VVT +IDG C+ G M+++ + P
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VV ++ L + ++ EA + M + PN TYNT+MDG
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG--------------- 272
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
YCK +V+ A+ L EML +G+ + T+ L MA
Sbjct: 273 ------YCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V P+ VY IDG K G + EA+ + S I H+ + + T + LI GLC + R++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D M+ G P+ VTYN +I G+CKEG +KA + M E G+EPN
Sbjct: 387 A-DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 120/268 (44%), Gaps = 48/268 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL + F PN VT+N+LI G C EG + +A + ++ +PN+ITF+TL
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ L+ EMV + G++ PDVV T +IDG KDG M + G+ P
Sbjct: 450 KAGKMEAAMGLYTEMVIK-GLL--PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHP 506
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V TL+ + D L KDG++ +A +++ + + T + +D C +
Sbjct: 507 NVFTLSCLIDGLCKDGRISDA---IKLFLAKTGTDTTGSKTNELD-----RSLCSPNHVM 558
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATT----YNTLFMAIN------------ 214
Y LI G C D + A +M G+R D T F A++
Sbjct: 559 YTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADIL 618
Query: 215 --NVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ P+S VY G ++G++ A+
Sbjct: 619 KMGIIPNSSVYRVLAKGYEESGYLKSAL 646
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 59/356 (16%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
S F LLG IL F PNMVTFN+LI G C G + +A +L++ + F+
Sbjct: 107 SFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAF--RLDLMAKGYPLDEFSYG 164
Query: 65 ALV-----------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
+L+ AL L ++M + + +P+++T + +IDGLCKD + D
Sbjct: 165 SLINGLCKNGQTRDALQLLQKMEED---LVRPNLITYSTVIDGLCKDRLIADALRLFSLV 221
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G+ DVV N + G+ EA LL +M++ ++NP+ T+N L+D
Sbjct: 222 TSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRI 281
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+G + D+ +YN L+ G+C NV +A L M+ G+ D YN L
Sbjct: 282 VEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
I+G K V EAM +F I V + T N LIDGLCK+G
Sbjct: 342 -----------------INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLG 384
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ ++ M + G +PD+VTYNI + FCK ++KA L + + G+ P+
Sbjct: 385 RMSCVQELVDE-MCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPD 438
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 73/366 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN++T++++I GLC + I +A RLF
Sbjct: 174 GQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLF--------------- 218
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
+V G++ DVV ++I G C G M+ + PD
Sbjct: 219 ------------SLVTSRGILV--DVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
T N++ D L K+G++ EA + VM++R P+ TYN LM+GF
Sbjct: 265 DYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFN 324
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
+G DV +YN+LINGYCK V++A+ L +E+ + + + TYN+L
Sbjct: 325 RMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLG 384
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
M PD Y ++D K+ +A+ +F I +
Sbjct: 385 RMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYD 443
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+++ CK +LKIA + L+ + G P+V TY IMI+ CK+ +A LL M++
Sbjct: 444 VIVENFCKGEKLKIAEEALQHLLIH-GCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDD 502
Query: 320 TGLEPN 325
P+
Sbjct: 503 NDCPPD 508
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
+ +G+ P + TL ++ + + A LL +++ PN T+NTL++GF
Sbjct: 81 LHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGM 140
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG D +SY LING CK+ DA+ L ++M + +R + TY+T
Sbjct: 141 VSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYST 200
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ IDGL K+ + +A+++FS + + ++ + N LI G C +
Sbjct: 201 V-----------------IDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSV 243
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + A + M+++ + PD T+NI++ CKEG+ +A G+ M + G +P+
Sbjct: 244 GQWREATRLLTMMVRG-NINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPD 299
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 31/224 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++VT+N+L++G C + EA LF ++ +P+V+ +N L +++ +E +
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVL 357
Query: 79 FGVI-CK---PDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDNLSK 124
F I CK P++ T ++IDGLCK G M D+G PD+VT N+ D K
Sbjct: 358 FKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCK 417
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
E+A L ++Q + P+ Y+ +++ F K GC +V +
Sbjct: 418 SKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRT 476
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
Y I+IN CKD + ++A++L +M DA T+ T+ A+
Sbjct: 477 YTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQ 520
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PP V+ + + + G A+ +FS + + +I T LI+ C
Sbjct: 46 MLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAH 105
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
L A+ + +++ G P++VT+N +I+GFC G KA LD+ G
Sbjct: 106 LSFAFSLLGTILKM-GFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKG 155
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 174/345 (50%), Gaps = 54/345 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------L 64
++ F + VT+ +LI GLC G EA L K+ PNV+ +N L
Sbjct: 174 VVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGL 233
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
A +L+ ++V G PDV T T +I G C G M+D+ + +V T
Sbjct: 234 VTEARDLYSDVV---GRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYT 290
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N++ D L K G + +A+ + +MI+R P+ T+NTLM G+ ++
Sbjct: 291 YNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFA 350
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G DV+SYNILI GYCK+ +++A+SL +M + + + TY++L
Sbjct: 351 ECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSL----------- 399
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
IDGL K+G + A ++FSAI + + T N ++D LCKI + A ++F++
Sbjct: 400 ------IDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNL 453
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + GLTP+V +YNI+I+G+CK + +A L +M L P+
Sbjct: 454 MFER-GLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPD 497
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 161/367 (43%), Gaps = 72/367 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F +LG +L + N +T +++KGLC G + +A
Sbjct: 126 LGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALE---------------- 169
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
F + V G + D VT +I+GLCK G M Q +RP
Sbjct: 170 -----------FHDSVVAQGFLL--DEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRP 216
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-- 165
+VV N++ D L KDG + EA L ++ R ++P+ TY L+ GF W + R
Sbjct: 217 NVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLL 276
Query: 166 ---------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+VY+YNILI+ CK + A + M+ G R D T+NTL
Sbjct: 277 CDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLY 336
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
A + PD Y I G KN + EA+ +F+ + K I T
Sbjct: 337 NDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTY 396
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ LIDGLCK GR+ AW++F + + G +P+V+TYNIM+ CK KA L M
Sbjct: 397 SSLIDGLCKSGRISYAWELFSAI-HDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMF 455
Query: 319 ETGLEPN 325
E GL PN
Sbjct: 456 ERGLTPN 462
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 60/267 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VTFN+L+ G C ++EA +LF P+V ++N L + AL+L
Sbjct: 321 PDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSL 380
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F +M + P++VT +++IDGLCK G + D G P+V+T N+M D
Sbjct: 381 FNKMNYK---KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDA 437
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K +++A L +M +R + PN V SYNILINGYCK
Sbjct: 438 LCKIQLVDKAIELFNLMFERGLTPN---------------------VSSYNILINGYCKS 476
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ +++A++L EM N+ PDS Y IDGL K+G + A +
Sbjct: 477 KRIDEAMNLFEEMHRR-----------------NLVPDSVTYNCLIDGLCKSGRISHAWE 519
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKI 268
+F+ + + + + T N L D KI
Sbjct: 520 LFNVMHDGGPPVDVITYNILFDAFSKI 546
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+G + + +ILIN YC ++ A S+ +L G + +A T
Sbjct: 107 RGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAIT---------------- 150
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
TT + GL NG V +A++ ++ +L T LI+GLCKIG + A+++ H
Sbjct: 151 -LTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHK- 208
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ + P+VV YN+++ G CK+G +A L D+ G++P+
Sbjct: 209 MEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPD 252
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 161/352 (45%), Gaps = 49/352 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
P+ TF +L++G EG I A R+ K+ C P +T N L + E+ +
Sbjct: 229 APDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALG 288
Query: 77 ---NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E +PD VT + GLC++G M+ +G PDV T N + + LS
Sbjct: 289 YIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLS 348
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K+G+++EA ++ M+ R P+T T+NTL+ + + KG DVY
Sbjct: 349 KNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVY 408
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++NILIN CK + + L EM S G D TYN L M
Sbjct: 409 TFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEM 468
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N P + Y T ID L K + EA +VF + + T N LIDGLCK R+
Sbjct: 469 ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRI 528
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A ++ +++ GL P+ +TYN ++ +CK+G +KA +L M G E
Sbjct: 529 DDATELIEQMVKE-GLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFE 579
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 150/355 (42%), Gaps = 50/355 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + + + F P+ VT+N+ + GLC G + A ++ + DP+V T
Sbjct: 280 MGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFT 339
Query: 61 FNTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGFMMD-------- 105
+NT+ + L+ E+ G++ C PD T +I L + +
Sbjct: 340 YNTV-INCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G+ PDV T N++ + L K G L E M P+ TYN L+D
Sbjct: 399 TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKL 458
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S GC +YN +I+ CK +E+A + +M ++GI A T+NTL
Sbjct: 459 GNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTL 518
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL K + +A ++ + T N ++ CK G
Sbjct: 519 -----------------IDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQG 561
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+K A DI + N G DVVTY +I+G CK G+ Q A LL M G+ P
Sbjct: 562 NIKKAADILETMTAN-GFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 615
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 160/372 (43%), Gaps = 50/372 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S ++ +L P++ T+N++I L G + EA + ++ C P+ TF
Sbjct: 316 GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTF 375
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
NTL AL + N EE + E V PDV T +I+ LCK G M
Sbjct: 376 NTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS 435
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G PD VT N++ D+L GK+ A LL M +T TYNT++D
Sbjct: 436 SGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEE 495
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
++G ++N LI+G CK + ++DA L +M+ EG++ + TYN++
Sbjct: 496 AEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILT 555
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N D Y T I+GL K G A+K+ +
Sbjct: 556 HYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 615
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T + N +I L + L+ A ++F M G PD +TY I+ C+ G ++A
Sbjct: 616 TPKAYNPVIQSLFRRNNLRDALNLFRE-MTEVGEPPDALTYKIVFRSLCRGGGPIKEAFD 674
Query: 313 LLLDMEETGLEP 324
L++M G P
Sbjct: 675 FLVEMVNKGFMP 686
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 116/255 (45%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G++PDVVTLN + L + ++ A +LE M V P+ T+ TLM GF
Sbjct: 188 MTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGS 247
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC + N+LINGYCK VEDA+ ++ +++G D TYNT
Sbjct: 248 IEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNT 307
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
M PD Y T I+ L KNG + EA + + + +
Sbjct: 308 FVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRG 367
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C+ T N LI L RL+ A D+ L GL+PDV T+NI+I+ CK G
Sbjct: 368 CLPDTTTFNTLIVALSSQNRLEEALDLARELTVK-GLSPDVYTFNILINALCKVGDPHLG 426
Query: 311 NGLLLDMEETGLEPN 325
L +M+ +G P+
Sbjct: 427 IRLFEEMKSSGCTPD 441
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------- 213
G + D +N L+N + ++ S+ EM GI+ D T NTL A+
Sbjct: 157 GVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA 216
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ V PD +TT + G + G + A++V + + C T T N LI+G
Sbjct: 217 VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLING 276
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK+GR++ A + + G PD VTYN +HG C+ G A ++ M + G +P
Sbjct: 277 YCKMGRVEDALGYIQQEIAD-GFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDP 335
Query: 325 N 325
+
Sbjct: 336 D 336
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNVIT 60
G+ ++ F + V++ +LI GLC G A +L +K+ + P+VI
Sbjct: 137 GKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIM 196
Query: 61 F---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ + L + A +L+ EM+ + P+VVT ++I G C G + +
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVK---KIYPNVVTFNSLIYGFCIVGQLKEAVGLLN 253
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ P+V T N++ D L K+G++++A +L VMI++ V PN TY +LMDG+
Sbjct: 254 EMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVK 313
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G +V+SY+++ING CK++ V++AV L +EM + + + TY+
Sbjct: 314 EVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYS 373
Query: 208 TLFMA----------------INN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L INN P + Y + ++GL KN V +A+ + + + +
Sbjct: 374 SLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDE 433
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T L+DGLCK GRLK A I+ L+ G ++ Y +MI+G CKEG +
Sbjct: 434 GIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCK-GYPLNIRMYTVMINGLCKEGFFDE 492
Query: 310 ANGLLLDMEETGLEPN 325
A LL ME+ G P+
Sbjct: 493 ALSLLSQMEDNGCMPD 508
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 171/341 (50%), Gaps = 48/341 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+ L +++ PN+VTFNSLI G C G++ EA L ++++ +PNV TFN L
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILID 272
Query: 65 ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDG--LCKD--------GFMMDQGMRP 110
L ++ + V+ K P+VVT T+++DG L K+ + +G+ P
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTP 332
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW--- 159
+V + +VM + L K+ ++EA L + M +++ PNT TY++L+DG W
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLI 392
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
++G ++ +YN L+NG CK+ V+ A++L +M EGI+
Sbjct: 393 DEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQ---------------- 436
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD YTT +DGL KNG + +A +++ + L I +I+GLCK G A
Sbjct: 437 -PDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALS 495
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ M++ G PD VTY +I K ++ KA LL +M
Sbjct: 496 LLSQ-MEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 169/394 (42%), Gaps = 85/394 (21%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALN 70
M+ TP + FN ++ L A +++ + P + TFN L L LN
Sbjct: 46 MNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLN 105
Query: 71 LFEEMVNE-FGVICKPDVVTCTNIIDGLCKDG----------------FMMDQG------ 107
MV + + +PD VT ++ GLC +G F +DQ
Sbjct: 106 FAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLI 165
Query: 108 ------------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+RPDV+ + D+ KD + +A L MI + +
Sbjct: 166 NGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKI 225
Query: 144 NPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVS 189
PN T+N+L+ GF + +VY++NILI+G CK+ V+ A S
Sbjct: 226 YPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATS 285
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+ M+ +G+ + TY +L +++ V P+ H Y+ I+GL
Sbjct: 286 VLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLC 345
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
KN V EA+K+F + T + LIDGLCK GR+ WD+ + N G ++
Sbjct: 346 KNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEI-NNRGQPANI 404
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +++G CK Q KA LL M++ G++P+
Sbjct: 405 ITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPD 438
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L + + TPN VT++SLI GLC GRI + L ++N N+IT+N+L
Sbjct: 356 LFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLC 415
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A+ L +M +E G+ +PD+ T T ++DGLCK+G + D +G
Sbjct: 416 KNHQVDKAIALLTKMKDE-GI--QPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPL 472
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
++ VM + L K+G +EA LL M GC D +
Sbjct: 473 NIRMYTVMINGLCKEGFFDEALSLLSQM---------------------EDNGCMPDAVT 511
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSE 197
Y LI+ K+ AV L REM++
Sbjct: 512 YETLISALFKNNKNGKAVKLLREMIAR 538
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 166/365 (45%), Gaps = 63/365 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + LL + P + N +IKGLC GR +A FK + C P++ITF
Sbjct: 44 GKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITF 103
Query: 62 NTL--ALVALNLFEEMVNEFGVI-----CKPDVVTCTNIIDGLCKDG----------FMM 104
N L ALV EE F + C P+VVT T +I+GLCKDG M
Sbjct: 104 NILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMN 163
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+ G P+V+T +V+ + L K G+ ++ LL+ M +R P
Sbjct: 164 ETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP------------------- 204
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
DV YN L+NG CK R +++A+ L + M+ G TYN+L
Sbjct: 205 --DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M+ PPD Y T I GL ++ + +A + + +CV + T + +IDGLC
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322
Query: 267 KIGRLKIAW------DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
K R+ W +I M+ Q G P+ TY ++I G C+ + Q+A LL M ++
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQT-GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381
Query: 321 GLEPN 325
+ P+
Sbjct: 382 EVVPD 386
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 78/338 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+ ++I GLC +G++ A L +N C PNVIT++ L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL---------------- 177
Query: 81 VICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
++GLCK G M +G +PDV+ N + + L K +++E
Sbjct: 178 -------------VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L+++MI+ P TYN+LM+ F +GC DV +YN +I
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------------MA 212
G C+D ++DA +L ++M++ D TY+T+ M
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMK 344
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PP++ Y I+GL + +A+ + + + + V + + + +I LCK L
Sbjct: 345 QTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLD 404
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A+ IF M+ + P+ V Y +I G K G+ KA
Sbjct: 405 AAYKIFGMMSERE-CKPNPVAYAALIDGLSKGGEVDKA 441
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 160/364 (43%), Gaps = 69/364 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR GF LL + F P+++ +N+L+ GLC R+ EA L + + C P V+T+
Sbjct: 185 GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTY 244
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
N+L + A L + M +E G C PDV+ +I GLC+D + D
Sbjct: 245 NSLMELFCRSKQVDRAFRLIQVM-SERG--CPPDVINYNTVIAGLCRDARLDDAQALLKQ 301
Query: 110 -------PDVVTLNVMTDNLSKDGKME-----EANC-LLEVMIQRDVNPNTCTYNTLMDG 156
PDV+T + + D L KD +++ EA C +LE+M Q PN T
Sbjct: 302 MVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGT------- 354
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
Y ++I G C+ R + A++L R M+ + D ++++ +
Sbjct: 355 --------------YAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M+ P+ Y IDGL K G V +A++VF + + T
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATY 459
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++DGLC +GR++ A + ++ PD +Y +I G C+ ++A L +E
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVSCVEEAYELFQAVE 518
Query: 319 ETGL 322
G
Sbjct: 519 AKGF 522
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ + C + ++Y LI+G CK ++ A L EM GI PP
Sbjct: 21 FREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI-----------------PP 63
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
V+ I GL K G +A+ F + KC I T N L+D L K GR++ A+ IF
Sbjct: 64 GVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + P+VVTY +I+G CK+G+ +A LL M ETG PN
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 29/209 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN T+ +I+GLC + +A L +++ P++ +F+ + +L + +
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF---------MMDQGMRPDVVTLNVMTDNLSKD 125
FG++ CKP+ V +IDGL K G +M + RP V T N + D L
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGV 469
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G++EEA ++E MI ++ P+ +Y L+ G A +KG +V Y
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIR 200
N+L+N CK + + DA + +++ G +
Sbjct: 530 NVLVNELCKKKRLSDAHGVANKLIEAGYK 558
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
NC ++ L + G+ A +F + P+ TY +IHG CK G+ +A LL +M
Sbjct: 2 NCALNLLVRAGQHGQAVQLF----REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 319 ETGLEPN 325
+ G+ P
Sbjct: 58 DRGIPPG 64
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 170/344 (49%), Gaps = 64/344 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN +++ +L++ LC + R +A L + + P+V+T+ TL A+ L
Sbjct: 92 PNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVEL 151
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EM E G+ +P+VV + ++ G CK G M +G+ PDVV + D+
Sbjct: 152 LNEMC-ESGI--EPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDS 208
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + GK+++A ++++M +R + PN V +YN+LIN CK+
Sbjct: 209 LCRHGKVKKAARVMDMMTERGLEPN---------------------VVTYNVLINSMCKE 247
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------------VPPDSH 221
+V +A+ L + M +G++ D TYNTL +++ V PD
Sbjct: 248 GSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLM 307
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ + I GL K G++ +A++V + + + C + N LI GL ++ ++K A ++
Sbjct: 308 TFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDE- 366
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + GL PD TY+I+I+GFCK Q ++A L +M G+EP
Sbjct: 367 MASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPE 410
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 56/368 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL + S PN+V ++ L+ G C GR ++F++++ +P+V+ + L
Sbjct: 151 LLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLC 210
Query: 65 ---ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
+ +M+ E G+ +P+VVT +I+ +CK+G M ++G++PD
Sbjct: 211 RHGKVKKAARVMDMMTERGL--EPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPD 268
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF---AWWSK---- 162
VVT N + LS +M+EA LLE M+Q + V P+ T+N+++ G W +
Sbjct: 269 VVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQV 328
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
GCR ++ ++N+LI G + V+ A+ L EM S G++ D+ TY+ L
Sbjct: 329 RAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCK 388
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + P+ Y + + G + +A +F+ + + C L
Sbjct: 389 MRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEM-DRNCKLDAAA 447
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ +I G K G KIA + F M + GL PD VTY+I I+ F K G A +L M
Sbjct: 448 YSTMIHGAFKSGEKKIAEE-FLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQM 506
Query: 318 EETGLEPN 325
+G P+
Sbjct: 507 TASGFVPD 514
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSK----- 162
D V+ N + L + G ++ A LL VM PN +Y TLM +
Sbjct: 55 DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G R DV +Y LI G C +V+ AV L EM GI
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIE------------- 161
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P+ VY+ + G K G KVF + + LID LC+ G++K
Sbjct: 162 ----PNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKK 217
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+ + GL P+VVTYN++I+ CKEG ++A L +M E G++P+
Sbjct: 218 AARVMDMMTER-GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPD 268
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 70/260 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++TFNS+I GLC G + +A ++ + C N++ FN L A+ L
Sbjct: 304 PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMEL 363
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF---MMDQGMRP----------- 110
+EM + +PD T + +I+G CK + + M QGM P
Sbjct: 364 MDEMASSG---LQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKA 420
Query: 111 -----------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
D + M K G+ + A L+ MI + P+
Sbjct: 421 MCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDA 480
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TY+ ++ FA + G DV ++ LI GY + E + L RE
Sbjct: 481 VTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTRE 540
Query: 194 MLSEGIRADATTYNTLFMAI 213
M ++ + D +T+ ++
Sbjct: 541 MTAKDVALDPKIISTIVTSL 560
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 164/333 (49%), Gaps = 45/333 (13%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLFEEMV 76
+N +I GLC RI EA ++F+K+N P+ ++ L L A NLF++++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350
Query: 77 NEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDNLSKDG 126
+ GV P V T++I GLC ++ F M +G P VT NVM D K G
Sbjct: 351 HS-GVT--PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRG 407
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
+EEA L++ MI+ P+ TYNT+MDG S+ GC + S+N
Sbjct: 408 MLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHN 467
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+I G C+ ++ A R L E R M + PD Y+T I GL
Sbjct: 468 TIILGLCQQSKIDQACQ--RGKLDEAFRL------LKRMTDDGHVPDVVTYSTLISGLCS 519
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
V +A + + +C T+ T N LI GLCK GR+K A ++ ++ + G +PDVV
Sbjct: 520 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS-GQSPDVV 578
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN ++HG C+ GQ ++A LL DM GL PN
Sbjct: 579 TYNTLVHGHCRAGQTERARELLSDMVARGLAPN 611
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 158/371 (42%), Gaps = 64/371 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++L S TP+ V + SLI GLC +A LF +N C P+ +T+N +
Sbjct: 345 LFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASC 404
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
A +L ++M+ + V PDVVT ++DGLCK + + G P
Sbjct: 405 KRGMLEEACDLIKKMIEDGHV---PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP 461
Query: 111 DVVTLNVM---------TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ + N + D + GK++EA LL+ M P+ TY+TL+ G +
Sbjct: 462 NRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 521
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ C+ V + N LI+G CK +++A + M+S G D TYN
Sbjct: 522 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 581
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + P+ YT + GL K + EA VF+ + +
Sbjct: 582 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 641
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C + T LI G C G++ +F M G++PD V Y + CK G+ +
Sbjct: 642 GCAPNLFTYTALILGFCSAGQVDGGLKLFGE-MVCAGISPDHVVYGTLAAELCKSGRSAR 700
Query: 310 ANGLLLDMEET 320
A +L + E+
Sbjct: 701 ALEILREGRES 711
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 151/363 (41%), Gaps = 58/363 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ ++ LI GL G++ +A LF+KL P+ + + +L L N F++
Sbjct: 320 SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 379
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
F + C P VT +ID CK G M++ G PDVVT N + D L
Sbjct: 380 LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 439
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---GCRH-------------- 166
K ++EEA L M + PN ++NT++ G SK C+
Sbjct: 440 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMT 499
Query: 167 ------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
DV +Y+ LI+G C V+DA L +M+ + T NTL
Sbjct: 500 DDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIK 559
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + PD Y T + G + G A ++ S + + T L+
Sbjct: 560 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 619
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLCK RL A +F M++ G P++ TY +I GFC GQ L +M G+
Sbjct: 620 SGLCKANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI 678
Query: 323 EPN 325
P+
Sbjct: 679 SPD 681
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 138/343 (40%), Gaps = 75/343 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F LL R+ P++VT+++LI GLC+ R+ +A L + + C P V+T
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
NTL I GLCK G M+ G PD
Sbjct: 546 NTL-----------------------------IHGLCKAGRIKEAREVLDAMVSSGQSPD 576
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FA 158
VVT N + + G+ E A LL M+ R + PN TY L+ G FA
Sbjct: 577 VVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFA 636
Query: 159 WW-SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S GC ++++Y LI G+C V+ + L EM+ GI
Sbjct: 637 QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGI-----------------S 679
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI---ETCNCLIDGLCKIGRLKIA 274
PD VY T L K+G A+++ G E +DGL + G++++A
Sbjct: 680 PDHVVYGTLAAELCKSGRSARALEILRE-GRESLRSEAWGDEVYRFAVDGLLEAGKMEMA 738
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+++ G P ++ G CK GQ +A +L ++
Sbjct: 739 LGFVRDMVRG-GQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 51/308 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P + F S+I+G C GR EA ++F + C P +N L + +L+ +E
Sbjct: 8 PAPLLFTSVIQGWCNVGRTFEAVKIFSLMEE-CHSPYPDVYNVL-IDSLSKRQE------ 59
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
T + + + M+D+G PD T + L K GKM+EA +++ M
Sbjct: 60 ----------TEAVKKMVQ--VMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRS 107
Query: 141 RDVNP----------NTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
R + P C ++ F + +YNI++ CK V+DA+ L
Sbjct: 108 RMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALEL 167
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
R M + I A + +++ + GL +G + EA++V+
Sbjct: 168 ARTMSEKRIPLAAGSLDSVLV-----------------GLMDSGRIDEALQVYRENRREP 210
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C++T+ N L++G C G++ A ++ M + PD V+Y ++ G CK G+ ++A
Sbjct: 211 CLVTL---NVLLEGFCSRGQVDKARELLRA-MPDEECAPDEVSYCTVLDGLCKAGRVEEA 266
Query: 311 NGLLLDME 318
L D E
Sbjct: 267 VRLFGDRE 274
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 44/335 (13%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77
CF P+ TF +++ GLC G++ EA + ++ P T + LA L L M
Sbjct: 75 CF-PDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAH-ELCLRGSMER 132
Query: 78 EFGVICKPDVVTCTN---IIDGLCK-----DGFMMDQGMRPDVV-----TLNVMTDNLSK 124
F ++ V + ++ LCK D + + M + +L+ + L
Sbjct: 133 AFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMD 192
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
G+++EA L+V + P T N L++GF A + C D S
Sbjct: 193 SGRIDEA---LQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVS 249
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +++G CK VE+AV L + + +++ +L Y I GL
Sbjct: 250 YCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSL-----------RGYNIVILGL 298
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+N + EA+++F + + LIDGL K G+L A ++F L+ + G+TP
Sbjct: 299 CQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS-GVTPS 357
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V Y +IHG C A L DM G P+
Sbjct: 358 TVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 392
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI-ETCNCLIDGLCKIGRLKIAWD 276
P ++T+ I G G EA+K+FS + +C + N LID L K +
Sbjct: 8 PAPLLFTSVIQGWCNVGRTFEAVKIFSLM--EECHSPYPDVYNVLIDSLSKRQETEAVKK 65
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ +M + G PD T+ ++ G CK G+ +A ++ +M + P
Sbjct: 66 MVQ-VMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPP 112
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 173/377 (45%), Gaps = 55/377 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN--VFCCDPNVI 59
GR LL ++ + P+M T + LI LC +I EA + ++ + +
Sbjct: 388 GRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCF 447
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF------- 102
++N+L A +F MV+E + PDVV+ + +IDG CK D
Sbjct: 448 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSFV--PDVVSYSILIDGFCKIDELGRAEKLY 505
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M+D P+V T N + L + G++ +A + E M+ +P+ TY+TL+ GF+
Sbjct: 506 KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLA 565
Query: 161 --------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+GCR + +YN L++G CK+ ++A L R+M+ G D TY
Sbjct: 566 RKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTY 625
Query: 207 NTLFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TL NV PD Y + G ++ G EA ++F + +
Sbjct: 626 TTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVS 685
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+C + N +IDGL K RL A ++F + Q+ G +PD+VTYN +I G C E +
Sbjct: 686 RQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLS 745
Query: 309 KANGLLLDMEETGLEPN 325
+A + +++ L P+
Sbjct: 746 EAMKVFKEIDRLKLSPD 762
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 57/299 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA + + I ++C PN+ T+N+ + GL +GRI +A +++++ C P+VIT
Sbjct: 498 LGRAEKLYKQM--IDLNC-VPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVIT 554
Query: 61 FNTL----ALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++TL +L A LFE M++ C+P+ VT ++ GLCK+
Sbjct: 555 YSTLIHGFSLARKHDQAHELFETMISRG---CRPNAVTYNCLLHGLCKESKPDEAHELFR 611
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+++G PD VT + GK+E+A + + M+ + +P+ YN L+ GF
Sbjct: 612 KMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAG 671
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTY 206
S+ C+ D S+NI+I+G K + ++DAV + M + G D TY
Sbjct: 672 KPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 731
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
N+L I GL + EAMKVF I K N L++ +
Sbjct: 732 NSL-----------------IFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 88/385 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
+ GR L M+ +L+ + + +EA++LF+ + C P+ ++ + L
Sbjct: 221 VFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHC 280
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------------- 101
A LF EM E + V T + GLCK G
Sbjct: 281 KLENLDEAFKLFLEMAVESKAPL--NNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSS 338
Query: 102 ---------FMMDQG----------------MRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
+++ G ++P T + + L K G+++ A LLE
Sbjct: 339 QPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLE 398
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY----------------SYNILINGYCK 180
MI+R P+ T++ L++ K + SYN L+N CK
Sbjct: 399 TMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCK 458
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ V A ++ M+SE + PD Y+ IDG K + A
Sbjct: 459 AKKVHQAFAIFSTMVSE----------------RSFVPDVVSYSILIDGFCKIDELGRAE 502
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K++ + + CV + T N ++GL + GR+ A ++ ++ G +PDV+TY+ +IHG
Sbjct: 503 KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVA-AGCSPDVITYSTLIHG 561
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
F +H +A+ L M G PN
Sbjct: 562 FSLARKHDQAHELFETMISRGCRPN 586
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 52/332 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F ++ T+N L+ L + +A ++F+K+ PN T+ LV + +E
Sbjct: 125 FKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAV--LVQSSCYER---- 178
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME--------- 129
N + + G M+D+G +P +T+ L GK
Sbjct: 179 -------------NSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRD 225
Query: 130 -EANCLLEVMIQRDVNPNTCTYNTLMDGF----AWWSKGCRHDVYSYNILINGYCKDRNV 184
E +E+M+++ + N + ++ A GC+ D Y+ ++ +CK N+
Sbjct: 226 LEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENL 285
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMA------------------INNVPPDSHVYTTY 226
++A L EM E T F++ ++ VY
Sbjct: 286 DEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDML 345
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L ++G + +A + I + TC+ +I LCK GR+ A + +++ G
Sbjct: 346 IRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKR-G 404
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
PD+ T++++I+ CK + Q+A L M+
Sbjct: 405 YCPDMATHSMLINELCKADKIQEAQEFLQGMD 436
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 32/221 (14%)
Query: 135 LEVMIQRDVNPNTCTYNT------LMDG------FAW-WSKGCRHDVYSYNILINGYCKD 181
LEV++++ ++C L DG F W ++ +HDV++YN L++ +
Sbjct: 83 LEVVVKKWDGKSSCRETVGAVIKHLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRH 142
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
R+++ A + +M+++G+ + TY L M P S +Y
Sbjct: 143 RDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLY 202
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ L G E +VF + + + L+ + A +F +++
Sbjct: 203 QKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVK 262
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ G PD Y+ M+ CK +A L L+M P
Sbjct: 263 S-GCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAP 302
>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 525
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 173/378 (45%), Gaps = 60/378 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L + F+ + V + +LI GLC G+ +A L +K+ PN+I +
Sbjct: 140 GRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMY 199
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
N L A L EMV + I DV T ++I G C G
Sbjct: 200 NMVVDGLCKEGLVTEACGLCSEMVGKGICI---DVFTYNSLIHGFCGAGQFQGAVRLLNE 256
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+M + +RPDV T N++ D L K G + EA + +MI+R + P+ + N LM+G W
Sbjct: 257 MVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNG--WCL 314
Query: 162 KGCRHD----------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+GC + V SY+ LINGYCK + V++A+ L EM + D T
Sbjct: 315 RGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVT 374
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YN L M + PD Y +D K + +A+ +F I
Sbjct: 375 YNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIV 434
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ I T N LIDGLCK GR+K A +IF +L G P++ TYNIMI+G +EG
Sbjct: 435 DTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVK-GCRPNIRTYNIMINGLRREGLL 493
Query: 308 QKANGLLLDMEETGLEPN 325
+A LLL+M + G PN
Sbjct: 494 DEAEALLLEMVDDGFPPN 511
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------- 160
+P +VTL++ ++L+ G+M A ++ +++R + T TLM G
Sbjct: 88 KPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALN 147
Query: 161 ------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
SKG D Y LING CK DA+ L R+M G+R + YN +
Sbjct: 148 LYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMV----- 202
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+DGL K G V EA + S + + + T N LI G C G+ + A
Sbjct: 203 ------------VDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGA 250
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + ++ + PDV T+NI++ CK G +A + M + GLEP+
Sbjct: 251 VRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPD 301
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 36/237 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+ G ++ P++V+ N+L+ G C G + EA +F ++ PNVI+++TL
Sbjct: 289 VFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYC 348
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+V AL L EM V PD VT ++DGL K G M G P
Sbjct: 349 KVKMVDEALRLLTEMHQRNLV---PDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAP 405
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------F 157
D++T NV+ D+ K +++A L + ++ ++PN TYN L+DG F
Sbjct: 406 DLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIF 465
Query: 158 AWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
S KGCR ++ +YNI+ING ++ +++A +L EM+ +G +A T++ L A+
Sbjct: 466 QLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRAL 522
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-------- 218
+ S N L++ K ++ VSLC + S+G + TL + IN++
Sbjct: 54 SIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLV--TLSIFINSLTHLGQMGLAF 111
Query: 219 -------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
D TT + GL G EA+ ++ + LI+GL
Sbjct: 112 SVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGL 171
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
CK+G+ + A ++ M+ G+ P+++ YN+++ G CKEG +A GL +M G+
Sbjct: 172 CKMGKTRDAIELLRK-MEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGI 227
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 55/322 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F PN +T+N+L+ GLC GR+ +A L++++ P+V+T+NTL L+ F
Sbjct: 6 FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTL----LHGF------ 55
Query: 79 FGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
CK ++ I DG K GF+ PDVVT N + + K K++EA +L+
Sbjct: 56 ----CKVGELDEALKIFDGAVKRGFV------PDVVTYNALINGFCKADKLDEAQRILQR 105
Query: 138 MIQRDVNPNTCTYNTLMDGFAW-----------WSKGCRHDVYSYNILINGYCKD-RNVE 185
M+ ++ P+ TYN+L++G KG +V +Y+ LI+G C++ R V
Sbjct: 106 MVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVS 165
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A+ L +L +G + TYN L IDGL K V EA ++FS
Sbjct: 166 EALKLFGSVLKQGYEPEVPTYNIL-----------------IDGLLKEDRVNEAFELFSG 208
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCK 303
+ H T IDGLCK GR++ D ML M G PDVV++N +I+G CK
Sbjct: 209 LVKHGLEPDAITYTVFIDGLCKAGRVE---DALLMLKDMDEKGCVPDVVSHNAVINGLCK 265
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
E + +A LL ME G PN
Sbjct: 266 EKRVDEAEVLLSGMEAKGCSPN 287
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 180/376 (47%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L R++ + ++P++VT+N+L+ G C G + EA ++F P+V+T+
Sbjct: 24 GRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTY 83
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD 105
N L A + + MV+E V PDVVT ++++GLCK+G ++D
Sbjct: 84 NALINGFCKADKLDEAQRILQRMVSENLV---PDVVTYNSLVNGLCKNGRVDEARMLIVD 140
Query: 106 QGMRPDVVTLNVMTDNLSKDGK-MEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
+G P+V+T + + L ++ + + EA L ++++ P TYN L+DG
Sbjct: 141 KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVN 200
Query: 157 --FAWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F +S +H D +Y + I+G CK VEDA+ + ++M +G D ++N +
Sbjct: 201 EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI 260
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M P++ + T I G + G +AM F +
Sbjct: 261 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK 320
Query: 253 LTIETCNCLIDGLCKI---GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T+ T N L+DGLCK GR+K A +F +++ G PDVVTY+ +I G K G+
Sbjct: 321 PTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK-GRVPDVVTYSALIDGLGKAGKLDD 379
Query: 310 ANGLLLDMEETGLEPN 325
A LL ME G PN
Sbjct: 380 ARRLLGAMEAKGCIPN 395
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 54/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE-- 74
F P++VT+N+LI G C ++ EA R+ +++ P+V+T+N+L L +E
Sbjct: 76 FVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEAR 135
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKD-----------GFMMDQGMRPDVVTLNVMTDNL 122
++ + G P+V+T + +I GLC++ G ++ QG P+V T N++ D L
Sbjct: 136 MLIVDKGF--SPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGL 193
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDV 168
K+ ++ EA L +++ + P+ TY +DG KGC DV
Sbjct: 194 LKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDV 253
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
S+N +ING CK++ V++A L M ++G +A ++NTL
Sbjct: 254 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 313
Query: 211 MAINNVPPDSHVYTTYIDGLYK---NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M V P Y +DGL K G + EA+ +F A+ V + T + LIDGL K
Sbjct: 314 MLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGK 373
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A + M+ G P+V TYN +I G C + +A L + M E G P+
Sbjct: 374 AGKLDDARRLLGA-MEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPD 430
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 56/343 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L R++ P++VT+NSL+ GLC GR+ EA L PNVIT++TL
Sbjct: 102 ILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGF---SPNVITYSTLISGLC 158
Query: 67 VALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDV 112
L E + FG + K P+V T +IDGL K+ ++ G+ PD
Sbjct: 159 RELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDA 218
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
+T V D L K G++E+A +L+ M ++ P+ ++N +++G
Sbjct: 219 ITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG 278
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN----------- 207
+KGC + S+N LI G C+ + A++ +EML G++ TYN
Sbjct: 279 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 338
Query: 208 --------TLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
TLF A+ PD Y+ IDGL K G + +A ++ A+ C+ + T
Sbjct: 339 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYT 398
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
N LI GLC + ++ A ++F + M G PD +TY +I
Sbjct: 399 YNSLISGLCGLEKVDEALELF-VAMVEKGCVPDTITYGTIISA 440
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 31/253 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M G P+ +T N + L G+M +A L E MI+ +P+ TYNTL+ GF
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G DV +YN LING+CK +++A + + M+SE + D TYN+
Sbjct: 61 LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120
Query: 209 LFMAI---------------NNVPPDSHVYTTYIDGLYKN-GFVLEAMKVFSAIGNHKCV 252
L + P+ Y+T I GL + V EA+K+F ++
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T N LIDGL K R+ A+++F L+++ GL PD +TY + I G CK G+ + A
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKH-GLEPDAITYTVFIDGLCKAGRVEDALL 239
Query: 313 LLLDMEETGLEPN 325
+L DM+E G P+
Sbjct: 240 MLKDMDEKGCVPD 252
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 37/245 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + F L ++ P+ +T+ I GLC GR+ +A + K ++ C P+V++ N
Sbjct: 198 RVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 257
Query: 63 TLALVALNLFEEMVNEFGVI--------CKPDVVTCTNIIDGLCKDGF----------MM 104
A++ E+ V+E V+ C P+ ++ +I G C+ G M+
Sbjct: 258 --AVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 315
Query: 105 DQGMRPDVVTLNVMTDNLSK---DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G++P VVT N++ D L K +G+++EA L + MI++ P+ TY+ L+DG
Sbjct: 316 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 375
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A +KGC +VY+YN LI+G C V++A+ L M+ +G D TY
Sbjct: 376 KLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYG 435
Query: 208 TLFMA 212
T+ A
Sbjct: 436 TIISA 440
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 166/363 (45%), Gaps = 49/363 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
++L + S P+ TF +L++G EG I A R+ ++ C P +T N L
Sbjct: 206 LMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGY 265
Query: 67 VALNLFEEMV----NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
L E+ + E +PD +T ++GLC++G M+ +G PDV
Sbjct: 266 CKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDV 325
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------- 161
T N++ + L K+G++EEA +L M++R P+ T+NTL+ +
Sbjct: 326 FTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
KG DVY++NILIN CK + + A+ L EM S G D TYNTL
Sbjct: 386 VTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK 445
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M P + Y T IDGL K + EA +VF + T N
Sbjct: 446 LGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 505
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK R+ A + ++ GL P+ +TYN ++ +CK+G +KA +L M
Sbjct: 506 LIDGLCKDKRIDDANQLISQMISE-GLQPNNITYNSILTHYCKQGDIKKAADILQTMTAN 564
Query: 321 GLE 323
G E
Sbjct: 565 GFE 567
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 160/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N ++ LC G++ EA + ++ C P++ TFNTL AL + N EE ++
Sbjct: 323 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDL 382
Query: 79 FGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ PDV T +I+ LCK G M G PD VT N + DNL
Sbjct: 383 ARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCS 442
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
GK+ +A LL+ M +T TYNT++DG + G + +
Sbjct: 443 LGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 502
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
+N LI+G CKD+ ++DA L +M+SEG++ + TYN++ M
Sbjct: 503 FNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMT 562
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N D Y T I+GL K G A+K+ + T + N +I L + +
Sbjct: 563 ANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTR 622
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEPN 325
A ++F M G PD TY I+ G C+ G ++A LL+M + G P
Sbjct: 623 DAMNLFRE-MTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPE 675
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ V +N L+ L ++ ++ ++ P+V+TFNTL A+ +
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + GV PD T T ++ G ++G M++ G P VT+NV+ +
Sbjct: 209 EEMSSS-GV--APDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGY 265
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G++E+A ++ I P+ TYNT ++G +G DV
Sbjct: 266 CKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDV 325
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
++YNI++N CK+ +E+A + +M+ G D TT+NTL +A
Sbjct: 326 FTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQ 385
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ + PD + + I+ L K G A+++F + + C T N LID LC +G+
Sbjct: 386 VTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGK 445
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M++ G VTYN +I G CK+ + ++A + M+ G+ N
Sbjct: 446 LGKALDLLKE-MESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 55/337 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L ++ + +P++ TFN LI LC G A RLF+++ C P+ +T+N
Sbjct: 375 RLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYN 434
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------M 104
TL AL+L +EM + C VT IIDGLCK + M
Sbjct: 435 TLIDNLCSLGKLGKALDLLKEMES---AGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491
Query: 105 D-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
D QG+ + +T N + D L KD ++++AN L+ MI + PN TYN+++ +
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDI 551
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ G DV +Y LING CK + A+ L R M +G+RA YN +
Sbjct: 552 KKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPV 611
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK-I 268
I L++ +AM +F + T + GLC+
Sbjct: 612 -----------------IQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGG 654
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
G ++ A+D F + M + G P+ ++ ++ G G
Sbjct: 655 GSIREAFD-FLLEMVDKGFIPEFSSFRMLAEGLLNLG 690
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 113/286 (39%), Gaps = 68/286 (23%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN--------------- 151
G++ D V N + + L + KM+ + M +R + P+ T+N
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204
Query: 152 --------------------TLMDGFA--------------WWSKGCRHDVYSYNILING 177
TLM GF GC + N+LING
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPD 219
YCK VEDA+ ++ ++ G D TYNT M PD
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y ++ L KNG + EA + + + C+ I T N LI LC RL+ A D+
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR 384
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL+PDV T+NI+I+ CK G Q A L +M+ +G P+
Sbjct: 385 QVTLK-GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD 429
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 166/365 (45%), Gaps = 63/365 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + LL + P + N +I+GLC GR +A FK + C P++ITF
Sbjct: 44 GKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITF 103
Query: 62 NTL--ALVALNLFEEMVNEFGVI-----CKPDVVTCTNIIDGLCKDG----------FMM 104
N L ALV EE F + C P+VVT T +I+GLCKDG M
Sbjct: 104 NILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMN 163
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+ G P+V+T +V+ + L K G+ ++ LL+ M +R P
Sbjct: 164 ETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP------------------- 204
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
DV YN L+NG CK R +++A+ L + M+ G TYN+L
Sbjct: 205 --DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFR 262
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M+ PPD Y T I GL ++ + +A + + +CV + T + +IDGLC
Sbjct: 263 LIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLC 322
Query: 267 KIGRLKIAW------DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
K R+ W +I M+ Q G P+ TY ++I G C+ + Q+A LL M ++
Sbjct: 323 KDWRVDADWKLEAACEILEMMKQT-GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381
Query: 321 GLEPN 325
+ P+
Sbjct: 382 EVVPD 386
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 78/338 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+ ++I GLC +G++ A L +N C PNVIT++ L
Sbjct: 134 PNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVL---------------- 177
Query: 81 VICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
++GLCK G M +G +PDV+ N + + L K +++E
Sbjct: 178 -------------VEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDE 224
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L+++MI+ P TYN+LM+ F +GC DV +YN +I
Sbjct: 225 ALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIA 284
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------------MA 212
G C+D ++DA +L ++M++ D TY+T+ M
Sbjct: 285 GLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMK 344
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PP++ Y I+GL + +A+ + + + + V + + + +I LCK L
Sbjct: 345 QTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLD 404
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A+ IF M+ + P+ V Y +I G K G+ KA
Sbjct: 405 AAYKIFGMMSERE-CKPNPVAYAALIDGLSKGGEVDKA 441
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 160/364 (43%), Gaps = 69/364 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR GF LL + F P+++ +N+L+ GLC R+ EA L + + C P V+T+
Sbjct: 185 GRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTY 244
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
N+L + A L + M +E G C PDV+ +I GLC+D + D
Sbjct: 245 NSLMELFCRSKQVDRAFRLIQVM-SERG--CPPDVINYNTVIAGLCRDARLDDAQALLKQ 301
Query: 110 -------PDVVTLNVMTDNLSKDGKME-----EANC-LLEVMIQRDVNPNTCTYNTLMDG 156
PDV+T + + D L KD +++ EA C +LE+M Q PN T
Sbjct: 302 MVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGT------- 354
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
Y ++I G C+ R + A++L R M+ + D ++++ +
Sbjct: 355 --------------YAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS 400
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M+ P+ Y IDGL K G V +A++VF + + T
Sbjct: 401 HDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELM-VESFRPGVATY 459
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++DGLC +GR++ A + ++ PD +Y +I G C+ ++A L +E
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVSCVEEAYELFQAVE 518
Query: 319 ETGL 322
G
Sbjct: 519 AKGF 522
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ + C + ++Y LI+G CK ++ A L EM GI PP
Sbjct: 21 FREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI-----------------PP 63
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
V+ I GL K G +A+ F + KC I T N L+D L K GR++ A+ IF
Sbjct: 64 GVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + P+VVTY +I+G CK+G+ +A LL M ETG PN
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 29/209 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN T+ +I+GLC + +A L +++ P++ +F+ + +L + +
Sbjct: 350 PNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI 409
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF---------MMDQGMRPDVVTLNVMTDNLSKD 125
FG++ CKP+ V +IDGL K G +M + RP V T N + D L
Sbjct: 410 FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGV 469
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G++EEA ++E MI ++ P+ +Y L+ G A +KG +V Y
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIR 200
N+L+N CK + + DA + +++ G +
Sbjct: 530 NVLVNELCKKKRLSDAHGVANKLIEAGYK 558
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
NC ++ L + G+ A +F + P+ TY +IHG CK G+ +A LL +M
Sbjct: 2 NCALNLLVRAGQHGQAVQLF----REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57
Query: 319 ETGLEPN 325
+ G+ P
Sbjct: 58 DRGIPPG 64
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N LI L GR+ EA LF ++ C P+ T+N+L + A+ L
Sbjct: 112 PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMEL 171
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EEM C PDV+T +++I GL KDG M +G +PD +T + D
Sbjct: 172 LEEMERHG---CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDA 228
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K G++++A LL+ M +R V P TYN L+ GF GC+ D
Sbjct: 229 LGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPD 288
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +Y+ LI G K +++A + ++M EG D TYNTL
Sbjct: 289 VVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFD 348
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M PD Y+T I L K V A +F + + + T +I L K G
Sbjct: 349 RMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAG 408
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A +F M+ GL+PDV+TYN ++ + G+ ++A + DM+E+GL P+
Sbjct: 409 QVDDADRLFSE-MRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 165/371 (44%), Gaps = 55/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S F L + P+ T+NSLI GL GR +A L +++ C P+V+T+
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTY 187
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
++L + A LF+EM KPD +T T ++D L K G
Sbjct: 188 SSLITGLGKDGETVKAFKLFQEMKRRGR---KPDSITFTALMDALGKAGRVDDALELLDE 244
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M ++G++P VVT N + K G + EA LL+ M + P+ TY+ L+ G S+
Sbjct: 245 MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ 304
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC D +YN LING K + DA L M S+G D TY+T
Sbjct: 305 LDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYST 364
Query: 209 LFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ + PD Y + I L K G V +A ++FS +
Sbjct: 365 LITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKG 424
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T N ++ L + GR K A IF M+ GL PDV TY+ ++ G K + A
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFED-MKESGLLPDVATYDALLLGLSKTKEVDDA 483
Query: 311 NGLLLDMEETG 321
GLL ++ E G
Sbjct: 484 CGLLKELIEQG 494
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 156/354 (44%), Gaps = 49/354 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE---E 74
+PN+VT+NSL+ L G+ EA LF++L P+V++++ L +L +E E
Sbjct: 6 SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+V E CKP++ T ++D L K G M D G PDV T N + L
Sbjct: 66 VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K G++ EA L M +R P+T TYN+L+ G + GC DV
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+Y+ LI G KD A L +EM G + D+ T+ L A+
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P Y I G K G ++EA + + + C + T +CLI GL K +L
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+ G PD +TYN +I+G K G A L M+ G P+
Sbjct: 306 DEACQVLKK-MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 158/365 (43%), Gaps = 49/365 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--L 66
+L + + +TP++V+++ LI L G+ A + ++ C PN+ T+NTL L
Sbjct: 30 LLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCL 89
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
F+E + + C PDV T +I L K G M ++G PD
Sbjct: 90 GKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDT 149
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------------- 158
T N + L K G+ ++A LLE M + P+ TY++L+ G
Sbjct: 150 FTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQE 209
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
+G + D ++ L++ K V+DA+ L EM G++ TYN L
Sbjct: 210 MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M N PD Y+ I GL K + EA +V + C T N
Sbjct: 270 LVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT 329
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI+GL K G L A +F M++ G PDVVTY+ +I K + + A L +ME
Sbjct: 330 LINGLGKAGLLNDAGRLFDR-MKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV 388
Query: 321 GLEPN 325
G++P+
Sbjct: 389 GIQPD 393
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 157/370 (42%), Gaps = 49/370 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + P +VT+N+LI G G ++EA L ++ C P+V+T+
Sbjct: 233 GRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTY 292
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
+ L L+ + +E + C PD +T +I+GL K G + D
Sbjct: 293 SCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS 352
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------D 155
+G PDVVT + + L K ++E A L E M + P+ TY +++ D
Sbjct: 353 KGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDD 412
Query: 156 GFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+S KG DV +YN +N + ++A + +M G+ D TY+ L +
Sbjct: 413 ADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLL 472
Query: 212 AINNVPP------------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
++ DS + ++ L G V EA ++ +
Sbjct: 473 GLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWP 532
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N LID L K GR+ A++ L + G PD+V+Y+ +I + GQ A L
Sbjct: 533 GASSYNALIDALAKAGRVSEAFNTLEDLKEQGG-KPDIVSYSSLISALGQTGQIDTAFEL 591
Query: 314 LLDMEETGLE 323
L +M + GL+
Sbjct: 592 LEEMSKRGLK 601
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 51/193 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
+P+++T+N+ + L GR EA ++F+ + P+V T++ L L A
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDAC 484
Query: 70 NLFEEMVNE------------------FGVICK--------------PDVVTCTNIIDGL 97
L +E++ + +G + + P + +ID L
Sbjct: 485 GLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDAL 544
Query: 98 CKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
K G + +QG +PD+V+ + + L + G+++ A LLE M +R + +
Sbjct: 545 AKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSP 604
Query: 148 CTYNTLMDGFAWW 160
+Y+ L+ W
Sbjct: 605 RSYSNLVRKLQDW 617
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 171/373 (45%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + +TF L+KGLC + R +A + +++ C P+V +
Sbjct: 106 GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFS 165
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ +++G K+G
Sbjct: 166 YNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYH 225
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PDVVT + + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G +V +Y+ L+N CK+ +A + M G+ D TY
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD HV+ I K V +AM VFS + H
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ +ID LCK G + A F ++ + GLTP+++ Y +IHG C + K
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDK 464
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 465 AEELILEMLDRGI 477
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 174/364 (47%), Gaps = 55/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
LL ++ + P+ FN LI + ++ +A +F K+ +PNV+ + T+ V
Sbjct: 362 ALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMR 109
A+ FE+M++E P+++ T++I GLC D + M+D+G+
Sbjct: 422 CKSGSVDDAMLYFEQMIDEG---LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGIC 478
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------- 156
+ + N + D+ K+G++ E+ L ++M++ V P+ TYNTL+DG
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 157 -FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
+ S G + D+ +Y LINGYC+ ++DA++L +EM+S G+ + TYN + +
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598
Query: 214 ----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ + Y + GL KN EA+++F + L T
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I L K GR+ A D+F N GL PDV TY++M ++G ++ + L L M
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717
Query: 318 EETG 321
EE G
Sbjct: 718 EENG 721
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +PNV+T+++L + A +
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M +PD+ T ++ G G M+ G++PD N++
Sbjct: 329 FDSMTKRG---LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHD 167
+K K+++A + M Q +NPN Y T++ D ++ + G +
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y LI+G C + A L EML GI NT+F + + I
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGI-----CLNTIF------------FNSII 488
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D K G V+E+ K+F + I T N LIDG C G++ A + M + G+
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS-MVSVGV 547
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+VTY +I+G+C+ + A L +M +G+ PN
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 172/397 (43%), Gaps = 99/397 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD------PNVITFNTL---------A 65
P++ ++N+L+KGLC E R EA L L++ D P+V+++NT+ +
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALEL---LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------------DGFMMD---- 105
A + + EM++ G++ PDVVT ++II LCK +G M D
Sbjct: 218 DKAYSTYHEMLDR-GIL--PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274
Query: 106 -------------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
G+ P+VVT + + + L K+G+ EA + + M +
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK 334
Query: 141 RDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVED 186
R + P+ TY TL+ G+A G + D + +NILI Y K V+
Sbjct: 335 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 394
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A+ + +M G+ + Y T+ M + P+ VYT+ I
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL +A ++ + + L N +ID CK GR+ + +F LM G+
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD-LMVRIGVK 513
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD++TYN +I G C G+ +A LL M G++P+
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 55/334 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
PN+VT++SL+ LC GR EA ++F + +P++ T+ TL ALV ++
Sbjct: 304 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHAL 363
Query: 73 EEMVNEFGVICKPD-----VVTCT-----NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
+++ G+ +PD ++ C + + M G+ P+VV + D L
Sbjct: 364 LDLMVRNGI--QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---WSKG------------CRHD 167
K G +++A E MI + PN Y +L+ G W K C +
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
++ +N +I+ +CK+ V ++ L M+ G++ D TYNTL
Sbjct: 482 IF-FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 540
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD Y T I+G + + +A+ +F + + I T N ++ GL
Sbjct: 541 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 600
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
R A +++ + ++ G ++ TYNI++HG CK
Sbjct: 601 RTAAAKELYVSITKS-GTQLELSTYNIILHGLCK 633
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
G G ++ +G R D +T + L D + +A ++++++R
Sbjct: 111 GFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA---MDIVLRR-------------- 153
Query: 156 GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
GC DV+SYN L+ G C + ++A+ L M + R +
Sbjct: 154 ---MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD--RGGGS----------- 197
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PPD Y T ++G +K G +A + + + + + T + +I LCK + A
Sbjct: 198 -PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + +++N G+ PD +TYN ++HG+C GQ ++A G L M G+EPN
Sbjct: 257 EVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V++Y ILI C+ ++ + ++ +G R DA T+ L +
Sbjct: 92 VHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPL-----------------L 134
Query: 228 DGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP- 285
GL + +AM V + C+ + + N L+ GLC R + A ++ HM+ +
Sbjct: 135 KGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRG 194
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+YN +++GF KEG KA +M + G+ P+
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPD 235
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P++VT+ +LI G C R+ +A LFK++ PN+IT+
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + + G + ++ T I+ GLCK+ + D+ +R
Sbjct: 590 NIILQGLFHTRRTAAAKELYVSITKSGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 646
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+M+EA L + P+ TY+ + +
Sbjct: 647 LCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGS 706
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG D + + S+ R++L G A TY LFM
Sbjct: 707 LEELDDLFLSMEENGCSADSRMLN--SIVRKLLQRGDITRAGTY--LFM 751
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R L ++ S +PN++T+N +++GL R A L+ + + T
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 623
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTN----IIDGLCKDGFMMDQ-------- 106
+N + L NL +E + F +C D+ T +I L K G M +
Sbjct: 624 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 683
Query: 107 --GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ PDV T ++M +NL + G +EE + L M + + ++ N+++
Sbjct: 684 ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 743
Query: 165 RHDVYSYNI 173
R Y + I
Sbjct: 744 RAGTYLFMI 752
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 175/370 (47%), Gaps = 70/370 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+ +++ F + V++ +LI GLC G A L ++++ N + +NT+
Sbjct: 144 AFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIY 203
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
A +L+ EMV++ G+ P+VVT + +I G G + D +
Sbjct: 204 GMCKDKHVNDAFDLYSEMVSK-GI--SPNVVTYSALISGFFVVGKLKDAIDLFNKIILEN 260
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
++PD T N++ D KD KM+E + +M+++ + P+ TYN+LMDG+ +
Sbjct: 261 IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAK 320
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
G D+ SYNILING+CK + V+ A++L EM + I + TYN+L
Sbjct: 321 SIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGL 380
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M VPP+ Y + ID L+K V +A+ + + + ++
Sbjct: 381 SKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSM 440
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T LIDGLCK+ +DI V TYN+MIHGFCK+G +A LL
Sbjct: 441 YTYTILIDGLCKVE----GYDI------------TVNTYNVMIHGFCKKGLFDEALSLLS 484
Query: 316 DMEETGLEPN 325
M+++ PN
Sbjct: 485 KMKDSSCIPN 494
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 163/368 (44%), Gaps = 53/368 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDPNVITFN 62
L R+L TP FN ++ L L +K+ N+F C+ + F
Sbjct: 73 LFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFC 132
Query: 63 TLALVALNLFEEMVNEFGVIC---KPDVVTCTNIIDGLCKDG---FMMDQGMRPD--VVT 114
L L+ + + + ++ D V+ +I GLCK G +D R D +V
Sbjct: 133 QLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQ 192
Query: 115 LNVMTDN-----LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
LN + N + KD + +A L M+ + ++PN TY+ L+ GF K
Sbjct: 193 LNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDL 252
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+ D Y++NIL++G+CKDR +++ ++ M+ +GI D TYN+L
Sbjct: 253 FNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCL 312
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
MA V PD Y I+G K V +AM +F+ + + + T
Sbjct: 313 VKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVT 372
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LIDGL K GR+ A + M + G+ P+++TYN +I K Q KA L+
Sbjct: 373 YNSLIDGLSKSGRISYALQLVDQ-MHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 431
Query: 318 EETGLEPN 325
++ G++P+
Sbjct: 432 KDQGIQPS 439
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 142/342 (41%), Gaps = 78/342 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L +I++ P+ TFN L+ G C + ++ E +F + P+V+T
Sbjct: 243 VGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVT 302
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-- 109
+N+L LV A ++F M + GV PD+ + +I+G CK +D+ M
Sbjct: 303 YNSLMDGYCLVKEVNTAKSIFNTMA-QGGV--NPDIRSYNILINGFCKIK-KVDKAMNLF 358
Query: 110 ---------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
P+VVT N + D LSK G++ A L++ M R V PN TYN+++D
Sbjct: 359 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDAL--- 415
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
K V+ A++L + +GI+ P
Sbjct: 416 ------------------FKTHQVDKAIALITKFKDQGIQ-----------------PSM 440
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ YT IDGL K +E + T+ T N +I G CK G A +
Sbjct: 441 YTYTILIDGLCK----VEGYDI-----------TVNTYNVMIHGFCKKGLFDEALSLLSK 485
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M++ P+ VTY I I ++ KA L +M GL
Sbjct: 486 -MKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 117/270 (43%), Gaps = 64/270 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ G + ++ P++VT+NSL+ G C + A +F + +P++ ++N
Sbjct: 280 KMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYN 339
Query: 63 TL---------ALVALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCKDGF-------- 102
L A+NLF EM CK P+VVT ++IDGL K G
Sbjct: 340 ILINGFCKIKKVDKAMNLFNEMH------CKNIIPNVVTYNSLIDGLSKSGRISYALQLV 393
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M D+G+ P+++T N + D L K ++++A L+ + + P+ TY L+DG
Sbjct: 394 DQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKV 453
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLC----------------------------- 191
+G V +YN++I+G+CK ++A+SL
Sbjct: 454 -EGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNEND 512
Query: 192 ------REMLSEGIRADATTYNTLFMAINN 215
REM++ G+ + +Y M I+
Sbjct: 513 KAEKLFREMITRGLLNRSASYPCSSMKIHQ 542
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 29/181 (16%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY--- 226
SY+ + + +V+DAVSL +L + A +N + + ++ H +T
Sbjct: 53 SYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKI---LGSLVKSKHYHTVLSLS 109
Query: 227 ----IDGLYKNGFV------------LEAMKVFSAIGNHKCVLTIE------TCNCLIDG 264
G+ N F L ++ A H ++ + + LI G
Sbjct: 110 QKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHG 169
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK+G + A D+ + + + V YN +I+G CK+ A L +M G+ P
Sbjct: 170 LCKVGETRAALDLLQRV-DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISP 228
Query: 325 N 325
N
Sbjct: 229 N 229
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 175/373 (46%), Gaps = 55/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +++ F N V++ +LI GLC G ARL +KL P+V+ +
Sbjct: 147 GEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMY 206
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQG 107
NT+ A +L+ EM+ + G+ P+VVT ++ G C K+ F +
Sbjct: 207 NTIIHSLCKNKLLGDACDLYSEMIVK-GI--SPNVVTYNALVYGFCIMGHLKEAFSLLNE 263
Query: 108 MR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ PDV T N + D L K+GKM+ A +L VM++ + P+ TYN+L+DG+ + +K
Sbjct: 264 MKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK 323
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G +V +Y +I+G CK++ V++A+SL EM + + D TY +
Sbjct: 324 VKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTS 383
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD + YT +D L K G + A + F +
Sbjct: 384 LIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKG 443
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L ++T N +I+GLCK A D+ M+ G PD +T+ +I ++ ++ KA
Sbjct: 444 YHLNVQTYNVMINGLCKADLFGEAMDL-KSKMEGKGCMPDAITFKTIICALFEKDENDKA 502
Query: 311 NGLLLDMEETGLE 323
+L +M GL+
Sbjct: 503 EKILREMIARGLQ 515
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 170/397 (42%), Gaps = 74/397 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG F LL + + P++ TFN+LI L EG++ A + + C P+V+T
Sbjct: 251 MGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVT 310
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMR----- 109
+N+L LN + F + + P+V T T +IDGLCK+ M+D+ M
Sbjct: 311 YNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEK-MVDEAMSLFEEM 369
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
PD+VT + D L K+ +E A L + M ++ + P+ +Y L+D
Sbjct: 370 KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRL 429
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG +V +YN++ING CK +A+ L +M +G DA T+ T+
Sbjct: 430 ENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTI 489
Query: 210 FMAINN-----------------------------------------VPPDSHVYTTYID 228
A+ + PD Y T +D
Sbjct: 490 ICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMD 549
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + + A VF ++ ++ +IDGLCK + A +F M++ +
Sbjct: 550 GYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEE-MKHKNMF 608
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++VTY +I CK ++A LL +M+E G++P+
Sbjct: 609 PNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPD 645
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 161/342 (47%), Gaps = 45/342 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN- 77
P++ ++ L+ LC GR+ A F++L V NV T+N + L +LF E ++
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDL 470
Query: 78 ---EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL--SKDGKMEEAN 132
G C PD +T II L F D+ + + + ++ L ++ +++EA
Sbjct: 471 KSKMEGKGCMPDAITFKTIICAL----FEKDENDKAEKILREMIARGLQEARKVRLKEAK 526
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+L VM + + P+ TY TLMDG+ + G +V Y I+I+G
Sbjct: 527 IVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGL 586
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDS 220
CK + V++A+SL EM + + + TY +L A+ + + PD
Sbjct: 587 CKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDV 646
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ YT +DGL K+G + A ++F + L ++ +I+ LCK G A D+
Sbjct: 647 YSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDL-QX 705
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M++ G PD VT++I+I ++ ++ KA +L +M GL
Sbjct: 706 KMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 149/361 (41%), Gaps = 49/361 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL- 71
R+L+ P FN ++ L LFKK P++ T N L +L
Sbjct: 53 RMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLT 112
Query: 72 -----FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMD----QGMRPDVVTLN 116
F + N P+ +T +I GLC G + D QG + + V+
Sbjct: 113 HITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYR 172
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWS----K 162
+ + L K G+ + LL + V P+ YNT++ D +S K
Sbjct: 173 TLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVK 232
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------- 215
G +V +YN L+ G+C ++++A SL EM + I D T+NTL A+
Sbjct: 233 GISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAA 292
Query: 216 -----------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ PD Y + IDG + V A VF ++ + T +IDG
Sbjct: 293 KIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDG 352
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK + A +F M+ + PD+VTY +I G CK ++A L M+E G++P
Sbjct: 353 LCKEKMVDEAMSLFEE-MKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQP 411
Query: 325 N 325
+
Sbjct: 412 D 412
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 45/200 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALN 70
TPN+ + +I GLC + + EA LF+++ PN++T+ +L AL A+
Sbjct: 573 TPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIA 632
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L +EM E G+ +PDV + T ++DGLCK G ++ +G +V M +
Sbjct: 633 LLKEM-KEHGI--QPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMIN 689
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING-YC 179
L K G +EA L++ + + KGC D +++I+I +
Sbjct: 690 ELCKAGLFDEA---LDLQXKME------------------DKGCMPDAVTFDIIIWALFE 728
Query: 180 KDRNVEDAVSLCREMLSEGI 199
KD N + A + EM++ G+
Sbjct: 729 KDEN-DKAEKILXEMIARGL 747
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 171/373 (45%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + +TF L+KGLC + R +A + +++ C P+V +
Sbjct: 106 GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFS 165
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ +++G K+G
Sbjct: 166 YNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYH 225
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PDVVT + + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 226 EMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 285
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G +V +Y+ L+N CK+ +A + M G+ D TY
Sbjct: 286 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYR 345
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD HV+ I K V +AM VFS + H
Sbjct: 346 TLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQH 405
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ +ID LCK G + A F ++ + GLTP+++ Y +IHG C + K
Sbjct: 406 GLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDK 464
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 465 AEELILEMLDRGI 477
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 174/364 (47%), Gaps = 55/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
LL ++ + P+ FN LI + ++ +A +F K+ +PNV+ + T+ V
Sbjct: 362 ALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMR 109
A+ FE+M++E P+++ T++I GLC D + M+D+G+
Sbjct: 422 CKSGSVDDAMLYFEQMIDEG---LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGIC 478
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------- 156
+ + N + D+ K+G++ E+ L ++M++ V P+ TYNTL+DG
Sbjct: 479 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 538
Query: 157 -FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
+ S G + D+ +Y LINGYC+ ++DA++L +EM+S G+ + TYN + +
Sbjct: 539 LASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 598
Query: 214 ----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ + Y + GL KN EA+++F + L T
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 658
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I L K GR+ A D+F N GL PDV TY++M ++G ++ + L L M
Sbjct: 659 FNIMIGALLKCGRMDEAKDLFAAHSAN-GLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717
Query: 318 EETG 321
EE G
Sbjct: 718 EENG 721
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +PNV+T+++L + A +
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M +PD+ T ++ G G M+ G++PD N++
Sbjct: 329 FDSMTKRG---LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICA 385
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+K K+++A + M Q +NPN Y T++D +G +
Sbjct: 386 YAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y LI+G C + A L EML GI NT+F + + I
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGI-----CLNTIF------------FNSII 488
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D K G V+E+ K+F + I T N LIDG C G++ A + M + G+
Sbjct: 489 DSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS-MVSVGV 547
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+VTY +I+G+C+ + A L +M +G+ PN
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 585
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 172/397 (43%), Gaps = 99/397 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD------PNVITFNTL---------A 65
P++ ++N+L+KGLC E R EA L L++ D P+V+++NT+ +
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALEL---LHMMADDRGGGSPPDVVSYNTVLNGFFKEGDS 217
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------------DGFMMD---- 105
A + + EM++ G++ PDVVT ++II LCK +G M D
Sbjct: 218 DKAYSTYHEMLDR-GIL--PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 274
Query: 106 -------------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
G+ P+VVT + + + L K+G+ EA + + M +
Sbjct: 275 NSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK 334
Query: 141 RDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVED 186
R + P+ TY TL+ G+A G + D + +NILI Y K V+
Sbjct: 335 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 394
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A+ + +M G+ + Y T+ M + P+ VYT+ I
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL +A ++ + + L N +ID CK GR+ + +F LM G+
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD-LMVRIGVK 513
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD++TYN +I G C G+ +A LL M G++P+
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 55/334 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
PN+VT++SL+ LC GR EA ++F + +P++ T+ TL ALV ++
Sbjct: 304 PNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHAL 363
Query: 73 EEMVNEFGVICKPD-----VVTCT-----NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
+++ G+ +PD ++ C + + M G+ P+VV + D L
Sbjct: 364 LDLMVRNGI--QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---WSKG------------CRHD 167
K G +++A E MI + PN Y +L+ G W K C +
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
++ +N +I+ +CK+ V ++ L M+ G++ D TYNTL
Sbjct: 482 IF-FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLA 540
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD Y T I+G + + +A+ +F + + I T N ++ GL
Sbjct: 541 SMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTR 600
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
R A +++ + ++ G ++ TYNI++HG CK
Sbjct: 601 RTAAAKELYVSITKS-GTQLELSTYNIILHGLCK 633
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
G G ++ +G R D +T + L D + +A ++++++R
Sbjct: 111 GFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA---MDIVLRR-------------- 153
Query: 156 GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
GC DV+SYN L+ G C + ++A+ L M + R +
Sbjct: 154 ---MTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD--RGGGS----------- 197
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PPD Y T ++G +K G +A + + + + + T + +I LCK + A
Sbjct: 198 -PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAM 256
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + +++N G+ PD +TYN ++HG+C GQ ++A G L M G+EPN
Sbjct: 257 EVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPN 305
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V++Y ILI C+ ++ + ++ +G R DA T+ L +
Sbjct: 92 VHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPL-----------------L 134
Query: 228 DGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP- 285
GL + +AM V + C+ + + N L+ GLC R + A ++ HM+ +
Sbjct: 135 KGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRG 194
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+YN +++GF KEG KA +M + G+ P+
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPD 235
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P++VT+ +LI G C R+ +A LFK++ PN+IT+
Sbjct: 530 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + + G + ++ T I+ GLCK+ + D+ +R
Sbjct: 590 NIILQGLFHTRRTAAAKELYVSITKSGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 646
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+M+EA L + P+ TY+ + +
Sbjct: 647 LCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGS 706
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG D + + S+ R++L G A TY LFM
Sbjct: 707 LEELDDLFLSMEENGCSADSRMLN--SIVRKLLQRGDITRAGTY--LFM 751
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R L ++ S +PN++T+N +++GL R A L+ + + T
Sbjct: 564 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 623
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTN----IIDGLCKDGFMMD--------- 105
+N + L NL +E + F +C D+ T +I L K G M +
Sbjct: 624 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 683
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ PDV T ++M +NL + G +EE + L M + + ++ N+++
Sbjct: 684 ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 743
Query: 165 RHDVYSYNI 173
R Y + I
Sbjct: 744 RAGTYLFMI 752
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 167/351 (47%), Gaps = 61/351 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEG---------RILEAARLFKKLNVFCCDPNVIT 60
LLG++L PN+ TFN ++GLC EG R++EA +K+ +P+ +T
Sbjct: 238 LLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLT 297
Query: 61 FNTLALVALNLFEEMVNEFGVICK--------PDVVTCTNIIDGLCKDG--------FM- 103
+N++ + + MV + + K PD T ++I+G CKDG F
Sbjct: 298 YNSI--IDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKD 355
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
+ +G+RP +V N + LS+ G + A L+ M + PN TYN +++G
Sbjct: 356 GLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGC 415
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KGC D+++YN LI+GYCK ++ A + M S+G+ D TYNT
Sbjct: 416 VSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNT 475
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L ++GL K G E M++F A+ C I T N ++D LCK
Sbjct: 476 L-----------------LNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKA 518
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ A D+ M++ GL PDVV++ + GFCK G A L ME+
Sbjct: 519 KKVNEAVDLLGE-MKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEK 568
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 165/364 (45%), Gaps = 64/364 (17%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++ T+ IK C R A RL + + CD N + + T+ A LF
Sbjct: 145 DVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELF 204
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNL 122
+EM+ +C PDVV ++ LCK G + + +G+ P++ T N+ L
Sbjct: 205 DEMLAR--CLC-PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGL 261
Query: 123 SKDGKME---------EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------ 161
++G ++ EA L M+ P+ TYN+++DG+
Sbjct: 262 CREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDA 321
Query: 162 --KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
KG + D ++Y LING+CKD + + A+++ ++ L +G+R YNTL
Sbjct: 322 VFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLI 381
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
MA N P+ Y I+GL K G V +A + C I T N L
Sbjct: 382 LPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTL 441
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDG CK +L A ++ + M + G+TPDV+TYN +++G CK G+ ++ + MEE G
Sbjct: 442 IDGYCKQLKLDSATEMVNR-MWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKG 500
Query: 322 LEPN 325
PN
Sbjct: 501 CTPN 504
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 144/321 (44%), Gaps = 50/321 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P++V +N+LIKGL +G IL A +L ++ C PN+ T+N + + ++ +
Sbjct: 363 PSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHL 422
Query: 76 VNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
V++ C PD+ T +IDG CK M QGM PDV+T N + + L K
Sbjct: 423 VDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCK 482
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
GK EE + + M ++ PN TYN ++D SKG + DV S
Sbjct: 483 AGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVS 542
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYN----------------TLFMAI 213
+ L G+CK +++ A L R M + + TYN LF +
Sbjct: 543 FGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVM 602
Query: 214 NNV--PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N PD++ Y IDG K G + + K + + ++ T +++ LC ++
Sbjct: 603 KNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKV 662
Query: 272 KIAWDIFHMLMQNPGLTPDVV 292
A I H+++Q G+ P+ V
Sbjct: 663 HEAVGIIHLMLQK-GIVPETV 682
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 40/245 (16%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWS-----------KGCRH 166
N + GK++EA E M + +P+ ++N +M+ F + + +G +
Sbjct: 85 NYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQS 144
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
DVY+Y I I +CK A+ L R M G ++A Y T+ + +
Sbjct: 145 DVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELF 204
Query: 216 -------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ PD + + L K G V E+ ++ + + T N + GLC+
Sbjct: 205 DEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCRE 264
Query: 269 GRLK--------IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
G L + + + M N G PD +TYN +I G+CK+G Q AN +L D
Sbjct: 265 GALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFK 324
Query: 321 GLEPN 325
G +P+
Sbjct: 325 GFKPD 329
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 169/338 (50%), Gaps = 40/338 (11%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN-LFEEMVNEF 79
P++V +N++I LC + + + L+ ++ P+V+T+NTL LN ++ ++ E+
Sbjct: 37 PDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEY 96
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G + +++ M + + P++ T + D L KDG++++A +L +MI
Sbjct: 97 GFSILGQMKEAVGLLNQ------MTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMI 150
Query: 140 QRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVE 185
++ V PN TYN+LMDG+ +G +V SY ++ING CK++ V+
Sbjct: 151 KQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVD 210
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A +L +EM S+ + D YN+L M P + Y + +
Sbjct: 211 EAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLL 270
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL KN V +A+ + + I N I T L+DGLCK GRL+ A +++ L+ N G
Sbjct: 271 DGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLL-NKGY 329
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y +MI+G CKEG +A LL ME+ P+
Sbjct: 330 QLDARIYTVMINGLCKEGFLDEALSLLSKMEDNKCTPD 367
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 61/327 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ TPN+ TF +L+ GLC +G + +A + + +PN++T
Sbjct: 101 LGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVT 160
Query: 61 FNTLA-----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL 115
+N+L + +N +++ N + +GM P+V +
Sbjct: 161 YNSLMDGYFLVKEVNKAKQLFNTISL------------------------RGMTPNVRSY 196
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSKGCRHD 167
VM + L K+ ++EA L + M +++ P+T YN+L+DG W G HD
Sbjct: 197 KVMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHD 256
Query: 168 ------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+ +YN L++G CK+ V+ A++L ++ ++GIR P+ +
Sbjct: 257 RGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIR-----------------PNIY 299
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT +DGL KNG + +A +V+ + N L +I+GLCK G L A +
Sbjct: 300 TYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSK- 358
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
M++ TPD VTY I I + +++
Sbjct: 359 MEDNKCTPDGVTYEITIRALFESDRNE 385
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 122/281 (43%), Gaps = 51/281 (18%)
Query: 95 DGLCKDGFMMDQGMR----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
D + GF ++ R PDVV N + D L KD + + L MI + + P+ TY
Sbjct: 18 DHVIAKGFHLNHIERLLVKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTY 77
Query: 151 NTLM--------------DGFAWW--------------SKGCRHDVYSYNILINGYCKDR 182
NTL+ GF+ SK ++ ++ L++G CKD
Sbjct: 78 NTLIYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDG 137
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
V+ A ++ M+ + + + TYN+L +++ + P+ Y
Sbjct: 138 EVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYK 197
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+GL KN V EA +F + + V N LIDGLCK R+ WD F M +
Sbjct: 198 VMINGLCKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWD-FIGEMHD 256
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +++TYN ++ G CK Q KA LL ++ G+ PN
Sbjct: 257 RGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIRPN 297
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 173/365 (47%), Gaps = 50/365 (13%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV 67
F +L +IL + PN +TF +LIKG+C G+ EA + + +++ L
Sbjct: 65 FSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNG 124
Query: 68 ALNLFE-----EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDV 112
+ E +M+ + V DVV + IID LCK F+ D +G+ P+V
Sbjct: 125 LCKMGETRAAMQMLRKTWV--NADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNV 182
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
T +++ D L KD K ++A LL +M+++ V PN TY +MDG+
Sbjct: 183 YTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNV 242
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
+G +V+ YNI+ING CK + V++A++L +EM + I D TYN L
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGK 302
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M D Y + + L KN + +A+ + I + + T
Sbjct: 303 ISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTT 362
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK GRL+ A+ IF ++ G V TYN+MI+G CK+G +A LL ME+
Sbjct: 363 LIDGLCKDGRLEDAYVIFQEILTE-GYHITVWTYNVMINGLCKKGLFDEALALLSRMEDN 421
Query: 321 GLEPN 325
P+
Sbjct: 422 ACIPD 426
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 165/354 (46%), Gaps = 52/354 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN------LFE 73
TP ++ FN ++ L A LF++L P+++T L + LF
Sbjct: 7 TPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFS 66
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ + +P+ +T T +I G+C +G ++ G + D V+ ++ + L
Sbjct: 67 ILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLC 126
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWS----KGCRHDVY 169
KM E ++++ + VN + Y+T++ D + +S KG +VY
Sbjct: 127 ---KMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVY 183
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+++IL++ CKDR + A++L M+ +G++ + TY + M
Sbjct: 184 TFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVM 243
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P+ Y I+GL K V EAM +F + K + T N LIDGLCK+G++
Sbjct: 244 VQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKI 303
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ M++ G T D++TYN ++H CK +A L+ ++++ G++PN
Sbjct: 304 STSLELVDE-MRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPN 356
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 36/238 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ PN+VT+ +++ G C ++ +A +F + +PNV +N +
Sbjct: 204 LLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLC 263
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+NLF+EM + I PDVVT +IDGLCK G M G
Sbjct: 264 KKKRVDEAMNLFKEM--HWKKI-NPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTV 320
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D++T N + L K+ +++A L++ + + + PN CTY TL+DG
Sbjct: 321 DIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIF 380
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
++G V++YN++ING CK ++A++L M DA +Y T+ A++
Sbjct: 381 QEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALS 438
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 41/173 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L+ + T +++T+NSL+ LC + +A L K++ PNV T
Sbjct: 300 LGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCT 359
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
+ TL IDGLCKDG + D +G
Sbjct: 360 YTTL-----------------------------IDGLCKDGRLEDAYVIFQEILTEGYHI 390
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
V T NVM + L K G +EA LL M P+ +Y T++ +A KG
Sbjct: 391 TVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETII--YALSEKG 441
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +V+ IL + + T+N +I GLC +G EA L ++ C P+ +++
Sbjct: 371 GRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSY 430
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99
T+ ++E G K + + C I+ GL K
Sbjct: 431 ETIIYA--------LSEKGETVKTNKLLCAMIVRGLSK 460
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 178/411 (43%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F +L +IL + P+ +T N+ IKG C +G+I +A KL + ++
Sbjct: 118 LGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVS 177
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------- 100
+ TL AL L + G + + DVV + IID +CKD
Sbjct: 178 YGTLINGLCKVGETRAALELLRRVD---GKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYS 234
Query: 101 -------------------GF---------------MMDQGMRPDVVTLNVMTDNLSKDG 126
GF M + + PDV T N++ D K+G
Sbjct: 235 EMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG 294
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
+++EA L +M+++ + P+ TYN+LMDG+ +G V SYN
Sbjct: 295 RVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYN 354
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAIN 214
I+ING+CK + V+ A+ L +EM + I + TYN+L M
Sbjct: 355 IVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDR 414
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD Y++ +D L KN V +A+ + + + + T LIDGLCK GRL+ A
Sbjct: 415 GQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 474
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IF L+ G V TY +MI GFC G +A LL M++ P+
Sbjct: 475 RNIFEDLLVK-GYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPD 524
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 158/389 (40%), Gaps = 84/389 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
TP + F ++ L LF+K+ PN + FN L L L +
Sbjct: 67 TPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFS 126
Query: 78 EFGVICK----PDVVTCTNIIDGLCKD----------------GFMMDQG---------- 107
I K PD +T I G C GF +DQ
Sbjct: 127 VLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLC 186
Query: 108 -------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
++ DVV + + D++ KD + +A L M+ R ++ N
Sbjct: 187 KVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIV 246
Query: 149 TYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TY+ L+ GF S+ DVY++NIL++ +CK+ V++A + M
Sbjct: 247 TYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMM 306
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
+ +GI+ D TYN+L M+ V Y I+G K V
Sbjct: 307 MKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMV 366
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+AMK+F + + + + T N LIDGLCK GR+ A ++ LM + G PD++TY+
Sbjct: 367 DQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID-LMHDRGQQPDIITYSS 425
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ CK KA LL+ +++ G+ PN
Sbjct: 426 ILDALCKNHLVDKAIALLIKLKDQGIRPN 454
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 153/353 (43%), Gaps = 72/353 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
T + ++N +I G C + +A +LFK+++ PNVIT+N+L AL
Sbjct: 347 TATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALE 406
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L + M + +PD++T ++I+D LCK+ + DQG+RP++ T ++ D
Sbjct: 407 LIDLMHDRGQ---QPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILID 463
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRH 166
L K G++E+A + E ++ + N TY ++ GF + SK C
Sbjct: 464 GLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIP 523
Query: 167 DVYSYNILI-NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-----DS 220
D +Y I+I + + KD N + A L REM++ G+ Y + ++ P DS
Sbjct: 524 DAITYEIIICSLFDKDEN-DKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDS 582
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--------IETCNCLIDGLCKIGRLK 272
T+ + +LE + CVLT +E + +I C
Sbjct: 583 LQCTSSQESGNWAKLLLERIYC-------DCVLTKSNMRDKDVECPSVIIYSTCD----- 630
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
W G DV TY +MI GFC G ++ LL ME G P+
Sbjct: 631 --W-------SKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPD 674
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 48/231 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PNM T+ LI GLC GR+ +A +F+ L V + V T+ + + LF+E ++
Sbjct: 453 PNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSL 512
Query: 79 FGVI----CKPDVVTCTNIIDGLC-KDGFMMDQGMRPDVVTLNVM--------------- 118
+ C PD +T II L KD + + +++T ++
Sbjct: 513 LSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMA 572
Query: 119 -------TDNLSKDGKMEEAN------------CLLEVMIQRDVN---PNTCTYNTLMDG 156
D+L E N C+L RD + P+ Y+T
Sbjct: 573 APAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTC--- 629
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W +G DV +Y ++I G+C +++++L +M G DA TY+
Sbjct: 630 -DWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +++ F + V++ +LI GLC G A L ++ + P+V+ +
Sbjct: 277 GQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMY 336
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF----- 102
NT+ A +L+ E V++ PDV T +I G C KD
Sbjct: 337 NTIIDGMCKDKHVNDAFDLYSEKVSKRIF---PDVFTYNALISGFCIVGKLKDAIDLFNK 393
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M + + PDV T +++ D KDG ++EA +L +M+++ + P+ TY++LMDG+
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G +V SYNI+ING+CK + V++A+ L +EM + I D TY++
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M PD Y + +D L K V +A+ + + +
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T L+ GLC+ G+L+ A +F L+ G DV Y +MI GFC +G +A
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVK-GYNLDVYAYTVMIQGFCDKGLFDEA 632
Query: 311 NGLLLDMEETGLEPN 325
LL MEE G P+
Sbjct: 633 LALLSKMEENGCIPD 647
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 149/346 (43%), Gaps = 71/346 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++ P++ TF+ L+ G C +G I EA
Sbjct: 381 VGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAK----------------- 423
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
N LA+ + ++ + KPDVVT ++++DG C + F M +G+
Sbjct: 424 -NVLAM----MMKQSI-------KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTA 471
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V + N+M + K ++EA L + M + + P+ TY++L+DG
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+G + D+ +YN +++ CK +V+ A++L ++ +GIR D TY L
Sbjct: 532 DEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTIL------- 584
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+ GL ++G + +A KVF + L + +I G C G A
Sbjct: 585 ----------VKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ + +N G PD TY I+I ++ ++ A LL +M GL
Sbjct: 635 LLSKMEEN-GCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 173/371 (46%), Gaps = 49/371 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LG++ P+ +T+N+++ GLC +GR+ EA L + PN TFN
Sbjct: 212 RFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFN 271
Query: 63 TLAL--VALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQ 106
L + L +E N ++ + PD T +I G CK G M +
Sbjct: 272 ILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENL 331
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
+ PDVVT N + + + G EE L+E M R + PN+ TYN ++ F K
Sbjct: 332 KLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEV 391
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
GC D+ +YN LI+ +CK +++A L EM +G++ D T NT+ A
Sbjct: 392 DKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRA 451
Query: 213 I------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ D Y T I G +K+ +A++++ + + + +
Sbjct: 452 LCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPS 511
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I T N +I GLC++G+ A D L+++ GL PD +TYN +IHG+C+EGQ +KA
Sbjct: 512 IITYNSMIAGLCQMGKTNQAIDKLDELLES-GLVPDEITYNTIIHGYCQEGQVEKAFQFH 570
Query: 315 LDMEETGLEPN 325
M E +P+
Sbjct: 571 NKMVEKNFKPD 581
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 145/336 (43%), Gaps = 52/336 (15%)
Query: 37 GRILEAARLFKKLNVFCCDPNVITFNTL--ALV------ALNLFEEMVNEFGVI-CKPDV 87
GR +AA++F ++ P ++T NTL ALV ++ L + + +F I K +
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINT 197
Query: 88 VTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+ +I G C + G M D G PD +T N + D L K G++ EA LL
Sbjct: 198 NSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLD 257
Query: 138 MIQRDVNPNTCTYNTLMDG---FAWWSKGCR-----------HDVYSYNILINGYCKDRN 183
M + + PN T+N L+ G W + D ++YN++I+G+CK
Sbjct: 258 MKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGR 317
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
+ +A+ L EM + + D TYNTL M + P+S Y
Sbjct: 318 IAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNV 377
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ K G + E K + C+ I T N LI CK+G++ A+ + M
Sbjct: 378 MVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDE-MGRK 436
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
GL D VT N M+ C+E + +A+ LL G
Sbjct: 437 GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRG 472
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 51/338 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + GF L+ + PN VT+N ++K +G++ E + +K+ C P+++T+
Sbjct: 351 GSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTY 410
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL ++ + K D ++D + + G MD VTLN M
Sbjct: 411 NTL-----------ISWHCKVGKMD--EAFRLMDEMGRKGLKMDD------VTLNTMLRA 451
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------D 167
L ++ K++EA+ LL +R + +Y TL+ G+ K +
Sbjct: 452 LCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPS 511
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I G C+ A+ E+L G+ D TYNT+ I
Sbjct: 512 IITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTI-----------------I 554
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G + G V +A + + + + TCN L+ GLCK G L+ A +F+ + G
Sbjct: 555 HGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISK-GK 613
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I CKE + +A LL +MEE L P+
Sbjct: 614 DVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD 651
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 35/217 (16%)
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------------GCRHDV 168
G+ +A + M + + P T NTL++ + G + +
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINT 197
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
S+NILI+G C + +A+ + +M G PPD+ Y T +D
Sbjct: 198 NSFNILIHGSCMENRFGEAIRVLGKMRDYG-----------------CPPDNITYNTILD 240
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL K G + EA + + N T N L+ G C++G LK A ++ ++ QN +
Sbjct: 241 GLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQN-SVV 299
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TYN+MI GFCK+G+ +A L +ME L P+
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPD 336
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 42/252 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF---KKLNVFCCDPN 57
+G+ F L+ + + VT N++++ LC E ++ EA L ++ F +
Sbjct: 420 VGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFV---D 476
Query: 58 VITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------ 102
+++ TL A AL L++EM E +I P ++T ++I GLC+ G
Sbjct: 477 EVSYGTLIIGYFKHEKASQALRLWDEM-KEKEII--PSIITYNSMIAGLCQMGKTNQAID 533
Query: 103 ----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF- 157
+++ G+ PD +T N + ++G++E+A M++++ P+ T NTL+ G
Sbjct: 534 KLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593
Query: 158 -------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
W SKG D SYN +I CK++ +A L EM + + D
Sbjct: 594 KEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCY 653
Query: 205 TYNTLFMAINNV 216
TYN + + +
Sbjct: 654 TYNAILGGLTDA 665
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 62/248 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + L +L S P+ +T+N++I G C EG++ +A + K
Sbjct: 525 MGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNK------------ 572
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRP 110
+V N KPDVVTC ++ GLCK+G + + +G
Sbjct: 573 -----MVEKNF------------KPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDV 615
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D V+ N + +L K+ + EA LLE M ++ + P+ TYN ++ G G D
Sbjct: 616 DAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLT--DAGRMKDAEE 673
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH----VYTTY 226
+ I K N + L G R DA T + +P + H Y+
Sbjct: 674 FISKIAEKGKSEN---------QFLELGKRQDART--------SEIPQEPHPNAIAYSNK 716
Query: 227 IDGLYKNG 234
I+ L G
Sbjct: 717 INELCSQG 724
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 15/154 (9%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I I Y A + M G++ T NTL A+ P + +
Sbjct: 128 DISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLS------ 181
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
VF+ + + N LI G C R A + M++ G PD
Sbjct: 182 --------KAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGK-MRDYGCPPDN 232
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN ++ G CK+G+ +A LLLDM+ GL PN
Sbjct: 233 ITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPN 266
>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 447
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 169/347 (48%), Gaps = 60/347 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + GF +L +IL + P+ VT N+LIKGLC +G++ +A KL N +
Sbjct: 106 MGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVG 165
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL A+ L +++ G + KPDVV + IID LCK
Sbjct: 166 YGTLINGVCKIGDTRAAIKLLKKID---GRLTKPDVVMYSTIIDALCKYQLVSEAYGLFS 222
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M +G+ DVVT N + GK++EA LL VM+ + +NP
Sbjct: 223 EMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINP---------------- 266
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDA---VSLCREMLSEGIRADATTYNTLFMAINNVPP 218
DVY+Y IL++ CK+ V++A +S +++ E M P
Sbjct: 267 -----DVYTYTILVDALCKEGKVKEAKRRISYVWDLIDE-------------MRDRGQPA 308
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D Y++ IDGL KNG + A+ +F+ + + + T L+DGL K GRLK A ++F
Sbjct: 309 DVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVF 368
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ G +V TYN+MI+G CK+G ++A +L ME+ G PN
Sbjct: 369 QDLL-TKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 414
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 136/348 (39%), Gaps = 87/348 (25%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R+L TP ++ FN ++ + + L +L + P++ T N L +N F
Sbjct: 49 RMLCMRHTPPIIQFNKILDSFA-KMKHYSTVSLSHRLELKGIQPDLFTLNIL----INCF 103
Query: 73 ---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
++ F V+ K ++ +G P VTLN + L G+++
Sbjct: 104 CHMGQITFGFSVLAK------------------ILKRGYPPSTVTLNTLIKGLCLKGQVK 145
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILI 175
+A + ++ + N Y TL++G + + DV Y+ +I
Sbjct: 146 KALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTII 205
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+ CK + V +A L EM +GI AD TYNTL M + +
Sbjct: 206 DALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTIN 265
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD + YT +D L K G V EA + R+ WD+
Sbjct: 266 PDVYTYTILVDALCKEGKVKEAKR----------------------------RISYVWDL 297
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G DV+TY+ +I G CK G +A L M++ G+ PN
Sbjct: 298 IDE-MRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPN 344
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 183/386 (47%), Gaps = 62/386 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MGR GF + G IL + + N + FN L+KGLC R+ EA L ++ F C PNV+
Sbjct: 208 MGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVV 267
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
++NTL A AL L M ++ G+ C PDVV+ +I+G ++G
Sbjct: 268 SYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLF 327
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+D+G+ PDVVT N + D L K ++ A + + M+ + V P+ TYN L+ G+
Sbjct: 328 LQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLST 387
Query: 158 AWWSKGCR-------HDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W + R HD+ + Y +L++ CK+ +A ++ ++ +GI+ DA
Sbjct: 388 GKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMID 447
Query: 207 NTL----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-------------- 248
+ M + P+ Y ID L K G V +A+ F+ + N
Sbjct: 448 EAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKA 507
Query: 249 ---------HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
L + N L+ LC+ GR+ A + ++++ G+ PDV++YN ++
Sbjct: 508 EELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLR-VGVRPDVISYNTLVD 566
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G C G+ +A LL M GL+PN
Sbjct: 567 GHCLTGRTDEAAKLLDVMVSIGLKPN 592
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 166/342 (48%), Gaps = 48/342 (14%)
Query: 26 FNSLI-KGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL-------FEEM 75
F+S+I KG+ + I EA +F K+ PNV+ + L AL L F +M
Sbjct: 432 FDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQM 491
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+NE +C V + L + M+DQG+R DVV N + +L ++G++ EA L+
Sbjct: 492 INEVYGLC---TVEKWEKAEELVFE--MLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLI 546
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
E+M++ V P+ +YNTL+DG + G + + ++YN L++GYCK
Sbjct: 547 ELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKA 606
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVY 223
R ++DA SL REML G D TYNT+ + + D + Y
Sbjct: 607 RRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTY 666
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
++GL KN V EA K+F ++ + L I T N +I L K G+ + A D+F +
Sbjct: 667 NIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISA 726
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PDV TY ++ KEG ++ L MEE G PN
Sbjct: 727 Y-GLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPN 767
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 123/289 (42%), Gaps = 50/289 (17%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
+ ++LF+ MV E PD T + +I C+ G ++ G R + + N
Sbjct: 175 LGISLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFN 234
Query: 117 VMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG------------ 163
+ L +++EA N LL M + PN +YNTL+ GF ++
Sbjct: 235 QLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMAD 294
Query: 164 -----CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
C DV SYN +ING+ ++ V+ A +L +M+ GI PP
Sbjct: 295 DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGI-----------------PP 337
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D Y T IDGL K V A VF + + + T NCLI G G+ K ++
Sbjct: 338 DVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWK---EVV 394
Query: 279 HML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L M L PD Y +++ CK G+ +A + + G++P+
Sbjct: 395 RLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPD 443
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 131/318 (41%), Gaps = 58/318 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ +L P+++++N+L+ G C GR EAA+L + PN T+
Sbjct: 537 GRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTY 596
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL CK I D M+ G PDVVT N +
Sbjct: 597 NTL--------------LHGYCK-----ARRIDDAYSLLREMLMNGPTPDVVTYNTILHG 637
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + G+ EA L Y +++ W D+Y+YNI++NG CK+
Sbjct: 638 LFQTGRFSEAKEL---------------YLNMINSRTQW------DMYTYNIILNGLCKN 676
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
V++A + + + S+G++ T+N + I L K G +AM
Sbjct: 677 NCVDEAFKMFQSLCSKGLQLHIITFNIM-----------------IGALLKGGKKEDAMD 719
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F+ I + V +ET + + L K G L+ +F + +N G P+ N ++ F
Sbjct: 720 LFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEEN-GTAPNSRMLNALVRRF 778
Query: 302 CKEGQHQKANGLLLDMEE 319
G +A L ++E
Sbjct: 779 LHRGDISRAGAYLSKLDE 796
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 172/339 (50%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+N++++ LC G++ EA + + C P+VIT+ L A+
Sbjct: 205 APDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMK 264
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM + CKPDVVT +I+G+CK+G M G +P+V+T N++
Sbjct: 265 LLDEMRKKG---CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILR 321
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ G A GC
Sbjct: 322 SMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVP 381
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN L++G+C+++ ++ A+ M+S G D TYNTL A
Sbjct: 382 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA-------------- 427
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L K+G V A+++ + + + C + T N +IDGL K+G+ + A ++ M+ G
Sbjct: 428 ---LCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEE-MRRKG 483
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD++TY+ ++ G +EG+ +A + DME ++P+
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPS 522
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 150/362 (41%), Gaps = 69/362 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L R++ P+++ SLI+G C G+ +A R+ + L P+VIT+
Sbjct: 120 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITY 179
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMRPDVVT 114
N L I G CK G + + PDVVT
Sbjct: 180 NVL-----------------------------IGGYCKSGEIDKALEVLERMSVAPDVVT 210
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N + +L GK++EA +L+ +QR+ P+ TY L++
Sbjct: 211 YNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMR 270
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------- 213
KGC+ DV +YN+LING CK+ +++A+ M S G + + T+N + ++
Sbjct: 271 KKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWM 330
Query: 214 -----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P + I+ L + + A+ V + H CV + N L+
Sbjct: 331 DAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLL 390
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G C+ ++ A + +++ G PD+VTYN ++ CK+G+ A +L + G
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSR-GCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC 449
Query: 323 EP 324
P
Sbjct: 450 SP 451
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 61/300 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN++T N +++ +C+ GR ++A RL + C P+V+TFN L A+++
Sbjct: 311 PNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 370
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
E+M C P+ ++ ++ G C++ M+ +G PD+VT N +
Sbjct: 371 LEKMPKHG---CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 427
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L KDGK++ A +L + + +P TYNT++DG K
Sbjct: 428 LCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK------------------- 468
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
E AV L EM +G++ D TY+TL + GL + G V EA+K
Sbjct: 469 --TEYAVELLEEMRRKGLKPDIITYSTL-----------------LRGLGREGKVDEAIK 509
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F + + T N ++ GLCK + A D F M G P TY I+I G
Sbjct: 510 IFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID-FLAYMVEKGCKPTEATYTILIEGI 568
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+ L ++G++EE LE MI + P+ +L+ GF K
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G DV +YN+LI GYCK ++ A+ + M +V PD
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERM--------------------SVAPDVV 209
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T + L +G + EAM+V +C + T LI+ C + A +
Sbjct: 210 TYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDE- 268
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G PDVVTYN++I+G CKEG+ +A L +M G +PN
Sbjct: 269 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPN 312
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L ++ +P ++T+N++I GL G+ A L +++ P++IT+
Sbjct: 432 GKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITY 491
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+TL A+ +F +M G+ KP VT I+ GLCK +
Sbjct: 492 STLLRGLGREGKVDEAIKIFHDME---GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAY 548
Query: 103 MMDQGMRPDVVTLNVMTDNLS 123
M+++G +P T ++ + ++
Sbjct: 549 MVEKGCKPTEATYTILIEGIA 569
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T+++L++GL EG++ EA ++F + P+ +T
Sbjct: 466 VGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVT 525
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+N + L A++ MV + CKP T T +I+G+
Sbjct: 526 YNAIMLGLCKAQQTSRAIDFLAYMVEKG---CKPTEATYTILIEGI 568
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 57/349 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEM 75
FN LI G + +A F ++ P+V++++T+ + A+ F +M
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V+E P++++ T++I GLC G M+++G+ PD + +N + DNL K+
Sbjct: 437 VSEG---LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 493
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
G++ EA +++I V P+ +YNTL+DG+ + K G R D ++Y
Sbjct: 494 GRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDS------- 220
N L+NGY K+ VEDA++L REM + ++ A T N LF A V
Sbjct: 554 NSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVD 613
Query: 221 -------HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
Y T + GL +N V EA+++F + + + L + T + +I+ L K+GR+
Sbjct: 614 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDE 673
Query: 274 AWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A +F M+++ P PDV+TY++MI +EG ++++ L L ME+ G
Sbjct: 674 AKSLFSAMVLRGP--VPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNG 720
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 55/355 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL---------ALVALNLFE 73
VT N LIKGLC R +A + F+++ P+V ++N L + AL L
Sbjct: 127 VTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLI 186
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
M + G C P+VV+ +IDG K+G MM QG+ PDVVT N + D L
Sbjct: 187 HMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLC 246
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K M++A +L+ M + V P+T TYN ++ G+ + G + DV
Sbjct: 247 KAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV 306
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FM 211
+Y++LI YCK +A S+ M+ +G + ++T Y+ L M
Sbjct: 307 TYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 366
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ +P + + I K+G V +AM F+ + + + + + +I LCK GR+
Sbjct: 367 IRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRV 426
Query: 272 KIAWDIFHM-LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++H M + GL+P+++++ +IHG C G+ +K L +M G+ P+
Sbjct: 427 EDA--VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPD 479
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 173/398 (43%), Gaps = 97/398 (24%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTL---------AL 66
+TP++ ++N+LIKGLC E + EA L + + C PNV+++NT+
Sbjct: 158 YTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVD 217
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------------DGFMMD----- 105
A LF EM+ G PDVVT ++IDGLCK G M D
Sbjct: 218 KAYFLFHEMM---GQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYN 274
Query: 106 ------------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
G++PDVVT +++ K G+ EA + + M+++
Sbjct: 275 IMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRK 334
Query: 142 DVNPNTCTYNTLMDGFAWWSKGCRHDVY----------------SYNILINGYCKDRNVE 185
PN+ Y+ L+ G+A +KG DV ++NILI Y K V+
Sbjct: 335 GQKPNSTIYHILLHGYA--TKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 392
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
A++ EM G+R D +Y+T+ M + P+ +T+ I
Sbjct: 393 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLI 452
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G + ++ + N N ++D LCK GR+ A D F M++ + G+
Sbjct: 453 HGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI-HIGV 511
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVV+YN +I G+C G+ ++ L M GL P+
Sbjct: 512 KPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPD 549
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 36/238 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL----FKKLNVFCCDP 56
+G+ L R++ P+ T+NSL+ G GR+ +A L F+K FC
Sbjct: 528 VGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAIT 587
Query: 57 NVITFNTL-----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQ 106
+ I + L + A L+ +MV+ G + + T ++ GLC+ + M +
Sbjct: 588 SNIMLHGLFQAGRIVAARELYMKMVDR-GTQLR--IETYNTVLGGLCENSCVDEALRMFE 644
Query: 107 GMRP-----DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+R DV T +++ + L K G+++EA L M+ R P+ TY+ ++
Sbjct: 645 DLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEG 704
Query: 157 ---------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ GC D + NI++ + +V A + ++ + +A+T
Sbjct: 705 LLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEAST 762
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 163/365 (44%), Gaps = 49/365 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
++L + P+ TF +L++G EG I A R+ K+ C P +T N L
Sbjct: 214 AVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLIN 273
Query: 65 ALVALNLFEEMV----NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ E+ + E +PD VT + LC++G M+ +G P
Sbjct: 274 GYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDP 333
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
DV T N + + LSK+G+++EA ++ M+ R P+T T+NTL+ +
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLA 393
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KG DVY++NILIN CK + + L EM S G D TYN L
Sbjct: 394 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSM 453
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N P + Y T ID L K + EA +VF + H + T
Sbjct: 454 GKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTF 513
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDGLCK R+ A ++ +++ GL P +TYN ++ +CK+G +KA +L M
Sbjct: 514 NTLIDGLCKAKRIDDATELIEQMVKE-GLQPSNITYNSILTHYCKQGDLKKAADILETMT 572
Query: 319 ETGLE 323
G E
Sbjct: 573 ANGFE 577
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 154/358 (43%), Gaps = 54/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCT-------EGRILEAARLFKKLNVFCCDPNVITFNTLALV--AL 69
F P+ + +I+ L T EG + E R + V ++ L A+
Sbjct: 85 FAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAV 144
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMT 119
+L +N FGV + D ++++ L + M D+G++PDVVTLN +
Sbjct: 145 DLVRNQLNTFGV--QADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLI 202
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L + ++ A +LE M V P+ T+ TLM GF GC
Sbjct: 203 KALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCS 262
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------------- 209
+ N+LINGYCK VEDA+ ++ +++G D TYNT
Sbjct: 263 PTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKV 322
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M PD Y T I+ L KNG + EA + + + + C+ T N LI LC
Sbjct: 323 MDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCS 382
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RL+ A D+ L GL+PDV T+NI+I+ CK G L +M+ +G P+
Sbjct: 383 QNRLEEALDLARELTVK-GLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPD 439
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 159/373 (42%), Gaps = 50/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S ++ +L P++ T+N++I L G + EA + ++ C P+ TF
Sbjct: 314 GHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTF 373
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
NTL AL + N EE + E V PDV T +I+ LCK G M
Sbjct: 374 NTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS 433
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
G PD VT N++ D+L GK+ A LL+ M +T TYNT++D
Sbjct: 434 SGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEE 493
Query: 161 ---------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ G ++N LI+G CK + ++DA L +M+ EG++ TYN++
Sbjct: 494 AEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILT 553
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N D Y T I+GL K G A+K+ +
Sbjct: 554 HYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRP 613
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T + N +I L + L+ A +F M G PD +TY I+ G C+ G ++A
Sbjct: 614 TPKAYNPVIQSLFRRNNLRDALSLFRE-MTEVGEPPDALTYKIVFRGLCRGGGPIKEAFD 672
Query: 313 LLLDMEETGLEPN 325
L++M G P
Sbjct: 673 FLVEMVNKGFMPE 685
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 154/328 (46%), Gaps = 54/328 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L + + F P++VT+ +L+ GLC G A RL + + C PNVI +
Sbjct: 196 GKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAY 255
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NT+ A NLF EM+ + G+ PD+ T ++I LC
Sbjct: 256 NTIIDSLCKDRQVTEAFNLFSEMITK-GI--SPDIFTYNSLIHALCNLCEWKHVTTLLNE 312
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M++ + P+VV + + D L K+G + A+ ++++MI+R V P+ TY LMDG S
Sbjct: 313 MVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE 372
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGC +V SYNILINGYC+ + ++ A+ L +M +G+ AD TYNT
Sbjct: 373 MDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 432
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD Y +D L KN + EAM + AI
Sbjct: 433 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 492
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIF 278
I N IDG+C+ G L+ A D+F
Sbjct: 493 LDADILVYNIAIDGMCRAGELEAARDLF 520
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 156/361 (43%), Gaps = 49/361 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL- 71
R+L P+ V F L+ + L +++ F P+V T N L +L
Sbjct: 102 RMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLR 161
Query: 72 -----FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLN 116
F + + C+PD T +I GLC +G + + +G +PDVVT
Sbjct: 162 RLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYG 221
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWS----K 162
+ + L K G A LL M+Q++ PN YNT++D F +S K
Sbjct: 222 TLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITK 281
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------- 213
G D+++YN LI+ C + +L EM++ I + ++T+ A+
Sbjct: 282 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIA 341
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
V PD YT +DG + EA+KVF + + CV + + N LI+G
Sbjct: 342 HDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILING 401
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
C+I R+ A + M GL D VTYN +IHG C G+ Q A L +M +G P
Sbjct: 402 YCQIQRMDKAMGLLEQ-MSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIP 460
Query: 325 N 325
+
Sbjct: 461 D 461
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 36/225 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ S PN+V F++++ LC EG I A + + +P+V+T+ L
Sbjct: 309 LLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 368
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A+ +F+ MV++ C P+V + +I+G C+ M QG+
Sbjct: 369 LRSEMDEAVKVFDTMVHKG---CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIA 425
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT N + L G+++ A L M+ P+ TY L+D
Sbjct: 426 DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLL 485
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
A D+ YNI I+G C+ +E A L + +G A
Sbjct: 486 KAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQGFAA 530
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 53/377 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MG GF G IL + + + + N L+ GLC R+ EA L +++ C P+ +
Sbjct: 107 MGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTV 166
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
++N L A AL L M ++ C P+VV+ + +I+G +G
Sbjct: 167 SYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLF 226
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
MMD+G+ PDVVT + D L K + A + + MI V PN TYN L+ G+
Sbjct: 227 LEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSI 286
Query: 158 AWWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W + G + + +Y L+N CK+ +A M+ +GI+ TTY
Sbjct: 287 GKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTY 346
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ M N + P+ H++ + K G + +AM +F+ +
Sbjct: 347 GIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQ 406
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ LID LCK+GR+ A F+ ++ N G+TPD+V ++ +++G C + +
Sbjct: 407 QGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI-NEGVTPDIVVFSSLVYGLCTVDKWE 465
Query: 309 KANGLLLDMEETGLEPN 325
K L +M G+ PN
Sbjct: 466 KVEELFFEMLNVGIHPN 482
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 174/367 (47%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL ++ + +PN FN G I +A +F K+ P+ +++ L AL
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424
Query: 68 ALNL-------FEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
L F +M+NE GV PD+V ++++ GLC ++ F M++ G+ P
Sbjct: 425 KLGRVDDAEVKFNQMINE-GVT--PDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHP 481
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
++V N + NL K+G++ E L++ + V P+ +YNTL+DG
Sbjct: 482 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 541
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
S G + D +SYN L++GYCK ++ A S R+MLS GI TYNT+ +
Sbjct: 542 EGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQT 601
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ D + Y ++GL K+ V EA+K+F + + L I T
Sbjct: 602 KRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITF 661
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K GR + A D+F + N GL +VVTY +++ +EG ++ + L ME
Sbjct: 662 NIMIGALLKGGRKEDAMDLFAAIPAN-GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAME 720
Query: 319 ETGLEPN 325
+ G PN
Sbjct: 721 KNGTAPN 727
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 171/396 (43%), Gaps = 77/396 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++L + TP +VT+N+++ GL R EA L+ + ++ T+
Sbjct: 567 GRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTY 626
Query: 62 NTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKDGFMMD---------- 105
N + L N +E + F +C +++T +I L K G D
Sbjct: 627 NIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 686
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G+ +VVT ++ +NL ++G +EE + L M + PN+ N L+ R
Sbjct: 687 NGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR 746
Query: 166 HDVY--------------SYNILINGYCKD----------------------------RN 183
Y + ++LI+ + D R
Sbjct: 747 AGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARR 806
Query: 184 VEDAVSLCREMLSEGIRADATTYNT----------------LFMAINNVPPDSHVYTTYI 227
++DA SL REML +G+ D TYNT L++++ N ++YT I
Sbjct: 807 IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866
Query: 228 --DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+GL K+ V EA K+F ++ + L I T N +I L K GR + A D+F + N
Sbjct: 867 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN- 925
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
GL PDVVTY ++ +EG ++ +GL L ME++G
Sbjct: 926 GLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSG 961
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 37/219 (16%)
Query: 143 VNPNTCTYNTLM----------DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAV 188
V PN CTY+ L+ GFA + G R D N L+NG C + V +A+
Sbjct: 90 VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149
Query: 189 SLCREMLSE-GIRADATTYNTLF------------------MAINNV---PPDSHVYTTY 226
+ + + E G D +YN L MA + V PP+ Y+T
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G + G V + +F + + + T +IDGLCK A +F ++ N G
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN-G 268
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P++ TYN +IHG+ G+ ++ +L +M G +PN
Sbjct: 269 VKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPN 307
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L ++ S N+ T+N ++ GLC + EA ++F+ L N+ITF
Sbjct: 840 GRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITF 899
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFM---------MDQ 106
N + AL+ E+ ++ F I PDVVT + + L ++G + M++
Sbjct: 900 NIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEK 959
Query: 107 GMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
P D LN + L + G + A L + +++ + T + L+ F+
Sbjct: 960 SGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFS 1012
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 165/373 (44%), Gaps = 50/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++ +L F P++ T+NSLI GLC G + EA ++ ++ C PN +T+
Sbjct: 315 GHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTY 374
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD----------GFMMD 105
NT+ L N EE V+ PDV T ++I GLC M
Sbjct: 375 NTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKT 434
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G PD T N++ D+L GK++EA LL+ M N TYNTL+DGF
Sbjct: 435 KGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAE 494
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+G + +YN LI+G CK VE+A L +M+ EG+R D TYN+L
Sbjct: 495 AEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLT 554
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
MA + PD Y T I GL K G V A K+ I L
Sbjct: 555 YFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINL 614
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T N +I L + R K A +F +++ PD VTY I+ G C+ G +A
Sbjct: 615 TPHAYNPVIQALFRRKRSKEAVRLFREMIEK-AEAPDAVTYKIVFRGLCQGGGPIGEAVD 673
Query: 313 LLLDMEETGLEPN 325
+++M E G P
Sbjct: 674 FVMEMLERGYVPE 686
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 162/392 (41%), Gaps = 91/392 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-------------- 66
P++ TFN LIK LC +I A L +++ F P+ TF T+
Sbjct: 193 PDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRV 252
Query: 67 ------------------------------VALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
AL EEM G PD T +++G
Sbjct: 253 KEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFF--PDKYTFNMLVNG 310
Query: 97 LCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
L K G M+ +G PD+ T N + L K G+++EA +L MI+RD +PN
Sbjct: 311 LSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPN 370
Query: 147 TCTYNTLMD--------------GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T TYNT++ KG DV +YN LI G C RN A+ L +
Sbjct: 371 TVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYK 430
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
EM ++G D TYN L M ++ + Y T IDG KN
Sbjct: 431 EMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNK 490
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVT 293
+ EA ++F + T N LIDGLCK R++ A + M+M+ GL PD T
Sbjct: 491 RIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIME--GLRPDKFT 548
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN ++ FCK G +KA ++ M G EP+
Sbjct: 549 YNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 149/357 (41%), Gaps = 51/357 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPNVITFNTLALVALNLFEEMV 76
F P+ F ++ L G + K K+++ D + + + + L+ E++
Sbjct: 85 FKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLVFIESYASFGLYNEIL 144
Query: 77 N-------EFGVICKPDVVT--CTNIIDG------LCKDGFMMDQGMRPDVVTLNVMTDN 121
EFGV+ ++DG M+ +G+RPDV T N++
Sbjct: 145 QFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKA 204
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + ++ A L+E M + P+ T+ T+M GF GC
Sbjct: 205 LCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVT 264
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTL----------------- 209
+ N+L+NG+CK+ +E+A+ EM L EG D T+N L
Sbjct: 265 NVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM 324
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD + Y + I GL K G V EA+KV + + C T N +I LCK
Sbjct: 325 DMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKE 384
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A + +++ G+ PDV TYN +I G C H A L +M+ G P+
Sbjct: 385 NQVEEATKL-ALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPD 440
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN+V++N +I G C +G + A+ +F + PNV+T+
Sbjct: 483 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 542
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ L + AL+LF++M++ + P T II+GLCK G M
Sbjct: 543 SILIDGNFKKGDSEKALDLFDQMLS---LNIAPTDFTFNTIINGLCKVGQMSEARDKLKN 599
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+++G P +T N + D K+G ++ A + M + V+PN TY +L++GF
Sbjct: 600 FLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 659
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG DV +Y+ LI+G+CK R++E A L E+L G+ + YN+
Sbjct: 660 IDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNS 719
Query: 209 L---FMAINN---------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ F +NN +P D YTT IDGL K G ++ A ++ + +
Sbjct: 720 MISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG 779
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V I T + L++GLC G+L+ A I M +TP V+ YN +I G+ +EG ++A
Sbjct: 780 IVPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLIYNTLIAGYFREGNLKEA 838
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL P+
Sbjct: 839 FTLHDEMLDRGLVPD 853
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 154/355 (43%), Gaps = 51/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L +I PN VT++ LI+G C G I +A+ L+ ++ + P+V
Sbjct: 379 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 438
Query: 62 NTL--ALVALNLFEEMVNEF--GVICK-PDVVTCTNIIDGLCKDGFM----------MDQ 106
N+L + L+EE F V C ++ T ++ LCK G M ++Q
Sbjct: 439 NSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQ 498
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
GM P+VV+ N M + G M+ A+ + M+ RD+ PN TY+ L+DG + KG
Sbjct: 499 GMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGN--FKKGDSE 556
Query: 167 DV----------------YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+++N +ING CK + +A + L EG TYN++
Sbjct: 557 KALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI- 615
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+DG K G + A+ V+ + + T LI+G CK R
Sbjct: 616 ----------------VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 659
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A M+ GL DV Y+ +I GFCK + A L ++ E GL PN
Sbjct: 660 IDLALKTRDE-MREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPN 713
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 142/318 (44%), Gaps = 53/318 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L L F P+ +T+NS++ G EG I A +++++ F PNV+T
Sbjct: 587 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT 646
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIID-GLCKDGFMMDQGMRPDVVTLNVMT 119
+ +L +N F CK +N ID L M ++G+ DV + +
Sbjct: 647 YTSL-----------INGF---CK------SNRIDLALKTRDEMREKGLELDVTAYSALI 686
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH--- 166
D K ME A L +++ ++PN YN+++ GF W+ K
Sbjct: 687 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 746
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +Y LI+G K+ + A L EMLS+GI D T++ L
Sbjct: 747 CDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL---------------- 790
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++GL G + A K+ + ++ N LI G + G LK A+ + H M +
Sbjct: 791 -VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL-HDEMLDR 848
Query: 286 GLTPDVVTYNIMIHGFCK 303
GL PD VTY+I+I+G K
Sbjct: 849 GLVPDDVTYDILINGKFK 866
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/408 (20%), Positives = 158/408 (38%), Gaps = 103/408 (25%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK----------------LNVFC 53
L ++++ + T + +++ EGR+ EA F++ + C
Sbjct: 247 LYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVC 306
Query: 54 CDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------- 106
PN + + L L EEM E G + P T T++I G M++
Sbjct: 307 KKPN-------SNLGLELLEEM-KERGWV--PSEATFTSVIVACVAQGNMVEALRLKEEM 356
Query: 107 ---GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------- 156
G ++V + G ++ A L + + + PN TY+ L++G
Sbjct: 357 INCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 416
Query: 157 -------------------------------FAWWSKGCR----------HDVYSYNILI 175
W + + ++++YNI++
Sbjct: 417 EKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMM 476
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+ CK +++A SL M+++G+ + +YN + M ++
Sbjct: 477 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK 536
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ Y+ IDG +K G +A+ +F + + T T N +I+GLCK+G++ A D
Sbjct: 537 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 596
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G P +TYN ++ GF KEG A + +M E G+ PN
Sbjct: 597 LKNFLEE-GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPN 643
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 176/349 (50%), Gaps = 57/349 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEM 75
FN LI G + +A F ++ P+V++++T+ + A+ F +M
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V+E P++++ T++I GLC G M+++G+ PD + +N + DNL K+
Sbjct: 440 VSEG---LSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
G++ EA +++I V PN +YNTL+DG+ + K G R D ++Y
Sbjct: 497 GRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDS------- 220
N L+NGY K+ VEDA++L REM + ++ A T N LF A V
Sbjct: 557 NALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVD 616
Query: 221 -------HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
Y T + GL +N V EA+++F + + + L + T N +I+ L K+GR+
Sbjct: 617 RGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINALLKVGRIDE 676
Query: 274 AWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A +F M+++ P P V+TY++MI +EG ++++ L L ME+ G
Sbjct: 677 AKSLFSAMVLRGP--VPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNG 723
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 169/355 (47%), Gaps = 55/355 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL---------ALVALNLFE 73
VT N LIKGLC R +A + F+++ P+V ++N L + AL L
Sbjct: 130 VTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLL 189
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMD----QGMRPDVVTLNVMTDNLS 123
M + G C P+VV+ + IIDG K+G F+ D QG PDVVT + + D L
Sbjct: 190 HMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLC 249
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K M +A +L+ M + V PNT TYN ++ G+ + G + DV
Sbjct: 250 KAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVV 309
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FM 211
+Y +LI YCK +A S+ M+ +G + ++T Y+ L M
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 369
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ +P + + I K+G V +AM F+ + + + + + +I LCKIGR+
Sbjct: 370 IRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRV 429
Query: 272 KIAWDIFHM-LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++H M + GL+P+++++ +IHG C G+ +K L +M G+ P+
Sbjct: 430 EDA--VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPD 482
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 173/398 (43%), Gaps = 97/398 (24%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTL---------AL 66
+TP++ ++N+LIKGLC E + EA L + + C PNV++++T+
Sbjct: 161 YTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVD 220
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------------------------- 99
A LF+EM+ G PDVVT +++IDGLCK
Sbjct: 221 KAYFLFDEMI---GQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYN 277
Query: 100 ---DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
G+ M G++PDVVT ++ K G+ EA + + M+++
Sbjct: 278 IMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRK 337
Query: 142 DVNPNTCTYNTLMDGFAWWSKGCRHDVY----------------SYNILINGYCKDRNVE 185
PN+ Y+ L+ G+A +KG DV ++NILI Y K V+
Sbjct: 338 GQKPNSTIYHILLHGYA--TKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVD 395
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
A++ EM G+R D +Y+T+ M + P+ +T+ I
Sbjct: 396 KAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLI 455
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G + ++ + N N ++D LCK GR+ A D F M++ + G+
Sbjct: 456 HGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVI-HIGV 514
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VV+YN +I G+C G+ ++ M GL P+
Sbjct: 515 KPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPD 552
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARL----FKKLNVFCCDPNVITFNTL---- 64
R++ P+ T+N+L+ G GR+ +A L F+K FC + I + L
Sbjct: 543 RMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAG 602
Query: 65 -ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMRP-----DVV 113
+ A L+ +MV+ G + + T ++ GLC+ + M + +R DV
Sbjct: 603 RIVAARELYMKMVDR-GTQLR--IETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVW 659
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWW 160
T N++ + L K G+++EA L M+ R P+ TY+ ++ D F
Sbjct: 660 TFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSM 719
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
K GC D + N++I + +V A + ++ + +A+T
Sbjct: 720 EKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEAST 765
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN+V++N +I G C +G + A+ +F + PNV+T+
Sbjct: 443 GKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 502
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ L + AL+LF++M++ + P T II+GLCK G M
Sbjct: 503 SILIDGNFKKGDSEKALDLFDQMLS---LNIAPTDFTFNTIINGLCKVGQMSEARDKLKN 559
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+++G P +T N + D K+G ++ A + M + V+PN TY +L++GF
Sbjct: 560 FLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 619
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG DV +Y+ LI+G+CK R++E A L E+L G+ + YN+
Sbjct: 620 IDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNS 679
Query: 209 L---FMAINN---------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ F +NN +P D YTT IDGL K G ++ A ++ + +
Sbjct: 680 MISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKG 739
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V I T + L++GLC G+L+ A I M +TP V+ YN +I G+ +EG ++A
Sbjct: 740 IVPDIITFHVLVNGLCNKGQLENARKILEE-MDRKNMTPSVLIYNTLIAGYFREGNLKEA 798
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL P+
Sbjct: 799 FTLHDEMLDRGLVPD 813
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 154/355 (43%), Gaps = 51/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L +I PN VT++ LI+G C G I +A+ L+ ++ + P+V
Sbjct: 339 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 398
Query: 62 NTL--ALVALNLFEEMVNEF--GVICK-PDVVTCTNIIDGLCKDGFM----------MDQ 106
N+L + L+EE F V C ++ T ++ LCK G M ++Q
Sbjct: 399 NSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQ 458
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
GM P+VV+ N M + G M+ A+ + M+ RD+ PN TY+ L+DG + KG
Sbjct: 459 GMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDG--NFKKGDSE 516
Query: 167 DV----------------YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+++N +ING CK + +A + L EG TYN++
Sbjct: 517 KALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI- 575
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+DG K G + A+ V+ + + T LI+G CK R
Sbjct: 576 ----------------VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNR 619
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A M+ GL DV Y+ +I GFCK + A L ++ E GL PN
Sbjct: 620 IDLALKTRDE-MREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPN 673
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 142/318 (44%), Gaps = 53/318 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L L F P+ +T+NS++ G EG I A +++++ F PNV+T
Sbjct: 547 VGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVT 606
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIID-GLCKDGFMMDQGMRPDVVTLNVMT 119
+ +L +N F CK +N ID L M ++G+ DV + +
Sbjct: 607 YTSL-----------INGF---CK------SNRIDLALKTRDEMREKGLELDVTAYSALI 646
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH--- 166
D K ME A L +++ ++PN YN+++ GF W+ K
Sbjct: 647 DGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIP 706
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +Y LI+G K+ + A L EMLS+GI D T++ L
Sbjct: 707 CDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL---------------- 750
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++GL G + A K+ + ++ N LI G + G LK A+ + H M +
Sbjct: 751 -VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTL-HDEMLDR 808
Query: 286 GLTPDVVTYNIMIHGFCK 303
GL PD VTY+I+I+G K
Sbjct: 809 GLVPDDVTYDILINGKFK 826
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/408 (20%), Positives = 158/408 (38%), Gaps = 103/408 (25%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK----------------LNVFC 53
L ++++ + T + +++ EGR+ EA F++ + C
Sbjct: 207 LYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVC 266
Query: 54 CDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------- 106
PN + + L L EEM E G + P T T++I G M++
Sbjct: 267 KKPN-------SNLGLELLEEM-KERGWV--PSEATFTSVIVACVAQGNMVEALRLKEEM 316
Query: 107 ---GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------- 156
G ++V + G ++ A L + + + PN TY+ L++G
Sbjct: 317 INCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 376
Query: 157 -------------------------------FAWWSKGCR----------HDVYSYNILI 175
W + + ++++YNI++
Sbjct: 377 EKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMM 436
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+ CK +++A SL M+++G+ + +YN + M ++
Sbjct: 437 SWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLK 496
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ Y+ IDG +K G +A+ +F + + T T N +I+GLCK+G++ A D
Sbjct: 497 PNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDK 556
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G P +TYN ++ GF KEG A + +M E G+ PN
Sbjct: 557 LKNFLEE-GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPN 603
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 56/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LLG+++ + N+ T+N I+GLC GR+ EA RL + + P+V+T+NTL
Sbjct: 208 LLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGL 266
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A++ M+N+ C PD T IIDG CK + + +G
Sbjct: 267 CKKSMPQEAMHYLRRMMNQG---CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV 323
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PD VT + + L +G +E A L + + P+ YN+L+ G
Sbjct: 324 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 383
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+GC D+ +YNI+ING CK N+ DA + + + +G D T+NTL
Sbjct: 384 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 443
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + PD+ Y + ++GL K G V E + F + C T
Sbjct: 444 RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPIT 503
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+ C+ +++ A + + M GL PD V++N +I+GFC+ G + A L +
Sbjct: 504 YNILIENFCRSNKMEEASKVI-VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 562
Query: 318 EETG 321
EE G
Sbjct: 563 EEKG 566
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 156/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + F P+ VT+ SLI GLC EG + A LF + P+++ +N+L
Sbjct: 313 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 372
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL + EM E C PD+ T +I+GLCK G + D +G P
Sbjct: 373 LQGLILHALQVMNEMAEEG---CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 429
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DV T N + D K K++ A L+E M + + P+T TYN++++G K
Sbjct: 430 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 489
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GC + +YNILI +C+ +E+A + +M EG+ DA ++NTL
Sbjct: 490 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL------- 542
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G +NG + A +F + T +T N LI + +A
Sbjct: 543 ----------IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 592
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ G D TY ++I G CK +A L++M + G P+
Sbjct: 593 IFDEMLSK-GHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 640
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 159/409 (38%), Gaps = 114/409 (27%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEM----VNEFGVIC 83
I+ GR+ +A F+++++F C P +N + ALV ++ V
Sbjct: 58 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117
Query: 84 KPDVVTCT-------------------------------NIIDGLCKDGF------MMDQ 106
PD+ T T ++ GL G + DQ
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 177
Query: 107 GMR----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN------------------ 144
+ P++ N + L K G + EA LL +IQR ++
Sbjct: 178 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 237
Query: 145 ----------------PNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNIL 174
P+ TYNTL+ G S +GC D ++YN +
Sbjct: 238 LPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 297
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I+GYCK V++A L ++ + +G D TY +L + +
Sbjct: 298 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 357
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD VY + + GL G +L A++V + + C I+T N +I+GLCK+G + A
Sbjct: 358 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 417
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + G PDV T+N +I G+CK + A L+ M E G+ P+
Sbjct: 418 VMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 465
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 141/317 (44%), Gaps = 40/317 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S V++ +M + P++ TFN+LI G C ++ A +L +++ + P+ IT
Sbjct: 409 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 468
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------- 105
+N++ L E+ F + C P+ +T +I+ C+ M +
Sbjct: 469 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 528
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+G+ PD V+ N + ++G +E A L + + ++ + T+NTL+ F+
Sbjct: 529 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 588
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SKG R D Y+Y +LI+G CK NV+ A EM+ +G +T+ +
Sbjct: 589 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV- 647
Query: 211 MAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
IN++ + V+ I + K G V E + + I L++ L K
Sbjct: 648 --INSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKKE----IAAPKILVEDLMKK 701
Query: 269 GRLKI-AWDIFHMLMQN 284
G + +++ H +Q+
Sbjct: 702 GHISYPTYEVLHEGVQS 718
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 56/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LLG+++ + N+ T+N I+GLC GR+ EA RL + + P+V+T+NTL
Sbjct: 207 LLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGL 265
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A++ M+N+ C PD T IIDG CK + + +G
Sbjct: 266 CKKSMPQEAMHYLRRMMNQG---CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV 322
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PD VT + + L +G +E A L + + P+ YN+L+ G
Sbjct: 323 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 382
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+GC D+ +YNI+ING CK N+ DA + + + +G D T+NTL
Sbjct: 383 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 442
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + PD+ Y + ++GL K G V E + F + C T
Sbjct: 443 RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPIT 502
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+ C+ +++ A + + M GL PD V++N +I+GFC+ G + A L +
Sbjct: 503 YNILIENFCRSNKMEEASKVI-VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 561
Query: 318 EETG 321
EE G
Sbjct: 562 EEKG 565
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 156/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + F P+ VT+ SLI GLC EG + A LF + P+++ +N+L
Sbjct: 312 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 371
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL + EM E C PD+ T +I+GLCK G + D +G P
Sbjct: 372 LQGLILHALQVMNEMAEEG---CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 428
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DV T N + D K K++ A L+E M + + P+T TYN++++G K
Sbjct: 429 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 488
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GC + +YNILI +C+ +E+A + +M EG+ DA ++NTL
Sbjct: 489 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL------- 541
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G +NG + A +F + T +T N LI + +A
Sbjct: 542 ----------IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 591
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ G D TY ++I G CK +A L++M + G P+
Sbjct: 592 IFDEMLSK-GHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 639
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 159/409 (38%), Gaps = 114/409 (27%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEM----VNEFGVIC 83
I+ GR+ +A F+++++F C P +N + ALV ++ V
Sbjct: 57 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116
Query: 84 KPDVVTCT-------------------------------NIIDGLCKDGF------MMDQ 106
PD+ T T ++ GL G + DQ
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 176
Query: 107 GMR----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN------------------ 144
+ P++ N + L K G + EA LL +IQR ++
Sbjct: 177 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 236
Query: 145 ----------------PNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNIL 174
P+ TYNTL+ G S +GC D ++YN +
Sbjct: 237 LPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 296
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I+GYCK V++A L ++ + +G D TY +L + +
Sbjct: 297 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 356
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD VY + + GL G +L A++V + + C I+T N +I+GLCK+G + A
Sbjct: 357 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 416
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + G PDV T+N +I G+CK + A L+ M E G+ P+
Sbjct: 417 VMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 464
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 141/317 (44%), Gaps = 40/317 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S V++ +M + P++ TFN+LI G C ++ A +L +++ + P+ IT
Sbjct: 408 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 467
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------- 105
+N++ L E+ F + C P+ +T +I+ C+ M +
Sbjct: 468 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 527
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+G+ PD V+ N + ++G +E A L + + ++ + T+NTL+ F+
Sbjct: 528 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 587
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SKG R D Y+Y +LI+G CK NV+ A EM+ +G +T+ +
Sbjct: 588 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV- 646
Query: 211 MAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
IN++ + V+ I + K G V E + + I L++ L K
Sbjct: 647 --INSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKKE----IAAPKILVEDLMKK 700
Query: 269 GRLKI-AWDIFHMLMQN 284
G + +++ H +Q+
Sbjct: 701 GHISYPTYEVLHEGVQS 717
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 56/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LLG+++ + N+ T+N I+GLC GR+ EA RL + + P+V+T+NTL
Sbjct: 210 LLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGL 268
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A++ M+N+ C PD T IIDG CK + + +G
Sbjct: 269 CKKSMPQEAMHYLRRMMNQG---CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFV 325
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PD VT + + L +G +E A L + + P+ YN+L+ G
Sbjct: 326 PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQV 385
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+GC D+ +YNI+ING CK N+ DA + + + +G D T+NTL
Sbjct: 386 MNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCK 445
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + PD+ Y + ++GL K G V E + F + C T
Sbjct: 446 RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPIT 505
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+ C+ +++ A + + M GL PD V++N +I+GFC+ G + A L +
Sbjct: 506 YNILIENFCRSNKMEEASKVI-VKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 564
Query: 318 EETG 321
EE G
Sbjct: 565 EEKG 568
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 156/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + F P+ VT+ SLI GLC EG + A LF + P+++ +N+L
Sbjct: 315 LLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLC 374
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL + EM E C PD+ T +I+GLCK G + D +G P
Sbjct: 375 LQGLILHALQVMNEMAEEG---CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLP 431
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DV T N + D K K++ A L+E M + + P+T TYN++++G K
Sbjct: 432 DVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETF 491
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GC + +YNILI +C+ +E+A + +M EG+ DA ++NTL
Sbjct: 492 QEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL------- 544
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G +NG + A +F + T +T N LI + +A
Sbjct: 545 ----------IYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 594
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ G D TY ++I G CK +A L++M + G P+
Sbjct: 595 IFDEMLSK-GHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPS 642
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 162/409 (39%), Gaps = 114/409 (27%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLFEEM----- 75
I+ GR+ +A F+++++F C P +N + ALV A ++ M
Sbjct: 60 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119
Query: 76 ----------VNEFGVICKPDV-------------VTCTNIIDGLCKDGF------MMDQ 106
+ F + +P + V ++ GL G + DQ
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQ 179
Query: 107 GMR----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN------------------ 144
+ P++ N + L K G + EA LL +IQR ++
Sbjct: 180 MLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR 239
Query: 145 ----------------PNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNIL 174
P+ TYNTL+ G S +GC D ++YN +
Sbjct: 240 LPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTI 299
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I+GYCK V++A L ++ + +G D TY +L + +
Sbjct: 300 IDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGI 359
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD VY + + GL G +L A++V + + C I+T N +I+GLCK+G + A
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + G PDV T+N +I G+CK + A L+ M E G+ P+
Sbjct: 420 VMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 467
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 143/321 (44%), Gaps = 40/321 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S V++ +M + P++ TFN+LI G C ++ A +L +++ + P+ IT
Sbjct: 411 MGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTIT 470
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------- 105
+N++ L E+ F + C P+ +T +I+ C+ M +
Sbjct: 471 YNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS 530
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+G+ PD V+ N + ++G +E A L + + ++ + T+NTL+ F+
Sbjct: 531 QEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMH 590
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SKG R D Y+Y +LI+G CK NV+ A EM+ +G +T+ +
Sbjct: 591 MAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRV- 649
Query: 211 MAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
IN++ + V+ I + K G V E + + I L++ L K
Sbjct: 650 --INSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTILNADKKE----IAAPKILVEDLMKK 703
Query: 269 GRLKI-AWDIFHMLMQNPGLT 288
G + +++ H +++ LT
Sbjct: 704 GHISYPTYEVLHEGVRDNKLT 724
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 97/215 (45%), Gaps = 34/215 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ V+FN+LI G C G + A LF+KL TFNTL +A +
Sbjct: 536 PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKI 595
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+EM+++ + D T +IDG CK M+ +G P + T + ++
Sbjct: 596 FDEMLSKGH---RADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINS 652
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L+ + ++ +A ++ +M++ V P +T+++ + ++ + IL+ K
Sbjct: 653 LTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA-------DKKEIAAPKILVEDLMKK 703
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
++ E+L EG+R + T + +NN+
Sbjct: 704 GHISYPTY---EVLHEGVRDNKLTRKHRMLLLNNL 735
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 171/386 (44%), Gaps = 85/386 (22%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---- 61
G L ++ P++VT+N+LI LC G + EA RL ++ C PNV+T+
Sbjct: 99 AGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLI 158
Query: 62 NTLALV-----ALNLFEEMVNE--------------FGVICK------------------ 84
N L V A L +EM + +CK
Sbjct: 159 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS 218
Query: 85 ----PDVVTCTNIIDGLCKDGF--------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
PD VT + +IDGLCK G M+ G P+VVT N + + L K KME A+
Sbjct: 219 LRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAH 278
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
++E M+ + V P+ TY+ L+D F S+GC +V ++N +I+G
Sbjct: 279 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 338
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
CK +A + ++ YN + + PD + I G K G +
Sbjct: 339 CKSDRSGEAFQIALQV-----------YNRMLV------PDKVTFNILIAGACKAGNFEQ 381
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A +F + + T LIDGLCK G+++ A DI LM N G+ P+VVTYN+++
Sbjct: 382 ASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNVLV 440
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
HG CK G+ ++ L +M +G P
Sbjct: 441 HGLCKSGRIEEPCEFLEEMVSSGCVP 466
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 171/390 (43%), Gaps = 86/390 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD--PNVITFNTL--ALVALNLFEEM- 75
PN+VT++ LI GLC GRI EA L +++ CD PN+IT+N+ L ++ E
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208
Query: 76 -----VNEFGVICKPDVVTCTNIIDGLCKDG----------------------------- 101
+ + + PD VT + +IDGLCK G
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGL 268
Query: 102 --------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
M+D+G+ PDV+T +V+ D K +++EA LL M R PN
Sbjct: 269 CKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNV 328
Query: 148 CTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
T+N+++DG +++ D ++NILI G CK N E A +L E
Sbjct: 329 VTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEE 388
Query: 194 MLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
M+++ ++ D T+ L M VPP+ Y + GL K+G
Sbjct: 389 MVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGR 448
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ E + + + CV T L+ LC+ R A + L ++ G PD VTYN
Sbjct: 449 IEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKL-KSFGWDPDTVTYN 507
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I++ G K G+ ++A +L +M G +P+
Sbjct: 508 ILVDGLWKSGKTEQAITVLEEMVGKGHQPD 537
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 165/352 (46%), Gaps = 56/352 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
+ G + P +VT+N++I GLC + LF++L P+V+T+NTL +L
Sbjct: 67 IFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSL 126
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR------------- 109
EE G + C P+VVT + +I+GLCK G +D+
Sbjct: 127 CKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVG-RIDEARELIQEMTRKSCDVL 185
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD----VNPNTCTYNTLMDGF---AWWSK 162
P+++T N D L K EA L+ + RD V+P+T T++TL+DG +
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSL--RDGSLRVSPDTVTFSTLIDGLCKCGQTDE 243
Query: 163 GCRHD---------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
C D V +YN L+NG CK +E A ++ M+ +G+ D TY+ L
Sbjct: 244 ACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL---- 299
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+D K V EA+++ + + C + T N +IDGLCK R
Sbjct: 300 -------------VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 346
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ I + + N L PD VT+NI+I G CK G ++A+ L +M ++P+
Sbjct: 347 AFQI-ALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 129/284 (45%), Gaps = 46/284 (16%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNV 117
AL +F + GV P +VT II+GLCK + + +G PDVVT N
Sbjct: 64 ALEIFRGEMARDGV--APTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNT 121
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ D+L K G +EEA L M R PN TY+ L++G K
Sbjct: 122 LIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKS 181
Query: 164 CR--HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
C ++ +YN ++G CK +A L R + +R V PD+
Sbjct: 182 CDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR---------------VSPDTV 226
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++T IDGL K G EA G + V + T N L++GLCK +++ A +
Sbjct: 227 TFSTLIDGLCKCGQTDEACNDDMIAGGY--VPNVVTYNALVNGLCKADKMERAHAMIES- 283
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+TPDV+TY++++ FCK + +A LL M G PN
Sbjct: 284 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPN 327
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 53/277 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN--------- 70
TPN+VTFNS+I GLC R EA ++ ++ P+ +TFN L A
Sbjct: 325 TPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASA 384
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
LFEEMV + +PDV+T +IDGLCK G M + G+ P+VVT NV+
Sbjct: 385 LFEEMVAKN---MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVH 441
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRH 166
L K G++EE LE M+ P + TY +L+ D SK G
Sbjct: 442 GLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDP 501
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +YNIL++G K E A+++ EM+ +G + PDS +
Sbjct: 502 DTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ-----------------PDSFTFAAC 544
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
GL+++G + M++ + + TC+ ++D
Sbjct: 545 FGGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILD 581
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 25/163 (15%)
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR-EMLSEGIRADATTYNTLFMAINNVP 217
++ + V YNI++ C+ A+ + R EM +G+ TYNT+
Sbjct: 36 FFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTI-------- 87
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIA 274
I+GL K+ + M++F + G+H V+T N LID LCK G L+ A
Sbjct: 88 ---------INGLCKSNELGAGMELFEELVKRGHHPDVVTY---NTLIDSLCKAGDLEEA 135
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ H M + G P+VVTY+++I+G CK G+ +A L+ +M
Sbjct: 136 RRL-HGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 177
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ S P +T+ SL+ LC R +A +L KL F DP+ +T+
Sbjct: 447 GRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ + EEMV G +PD T GL + G
Sbjct: 507 NILVDGLWKSGKTEQAITVLEEMV---GKGHQPDSFTFAACFGGLHRSGNLAGTMELLRV 563
Query: 103 MMDQGMRPDVVTLNVMTD 120
++ +GM PD T + + D
Sbjct: 564 VLAKGMLPDATTCSSILD 581
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++ LC+ G A +IF M G+ P +VTYN +I+G CK + L ++
Sbjct: 49 NIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 108
Query: 319 ETGLEPN 325
+ G P+
Sbjct: 109 KRGHHPD 115
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 161/358 (44%), Gaps = 72/358 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L C P++ TFN L+ LC +G +LE+ RLF K+ PN+ TFN
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF----- 336
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMT 119
I GLCK+G + +G+RPDVVT N +
Sbjct: 337 ------------------------IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVI 372
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
L + ++ EA L M+ PN TYN+++DG+ KG +
Sbjct: 373 CGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFK 432
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D ++Y L+NG+C+D + + A+++ ++ L +G+R YNTL
Sbjct: 433 PDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQL 492
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
MA PD Y I+GL K G + +A + C+ I T N L+DG C+
Sbjct: 493 MNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCR 552
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L A ++ + M + G+TPDV+TYN +++G CK + ++ + M E G PN
Sbjct: 553 QLKLDSAIELVNR-MWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPN 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 167/344 (48%), Gaps = 56/344 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LLG + P++VT+N++I GLC + R++EA K+ +PN T+N++
Sbjct: 352 LLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYC 411
Query: 65 ---ALVALN--LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FM--MDQGMR 109
+V N L + + F KPD T ++++G C+DG F + +G+R
Sbjct: 412 KKGMVVDANRILKDAVFKGF----KPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLR 467
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------- 160
P ++ N + L + G + A L+ M ++ P+ TYN +++G
Sbjct: 468 PSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHL 527
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+KGC D+++YN L++GYC+ ++ A+ L M S+G+ D TYNTL
Sbjct: 528 IGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTL------ 581
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
++GL K E M++F A+ C I T N +I+ LC ++ A
Sbjct: 582 -----------LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAV 630
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
D+ M++ GLTPDVV++ +I GFCK G A GL ME+
Sbjct: 631 DLLGE-MKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEK 673
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 167/367 (45%), Gaps = 56/367 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----- 65
L +++ F PN T+NS+I G C +G +++A R+ K P+ T+ +L
Sbjct: 388 LHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQ 447
Query: 66 ----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
A+ +F++ + G +P ++ +I GLC+ G M ++G +PD
Sbjct: 448 DGDPDQAMAVFKDGL---GKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPD 504
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
+ T N++ + L K G + +AN L+ I + P+ TYNTL+DG+
Sbjct: 505 IWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVN 564
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-- 215
WS+G DV +YN L+NG CK E+ + + + M +G + TYNT+ ++ N
Sbjct: 565 RMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSK 624
Query: 216 ----------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETC 258
+ PD + T I G K G + A +F + + T T
Sbjct: 625 KVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATY 684
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I + +K+A +F + +N G PD TY ++I GFCK G + LL+
Sbjct: 685 NIIISAFSEQLNMKMALRLFSEMKKN-GCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENI 743
Query: 319 ETGLEPN 325
E G P+
Sbjct: 744 EKGFIPS 750
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 154/390 (39%), Gaps = 92/390 (23%)
Query: 27 NSLIKGLCTE--------GRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMV 76
N+L++G+ E G+I EA F+++++F CDP+V ++N + LV F +
Sbjct: 151 NTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAH 210
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGF------------------------------ 102
+ + + DV T T I C+ G
Sbjct: 211 KVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGF 270
Query: 103 ---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
M++ + PDV T N + L K G + E+ L + +++R V PN
Sbjct: 271 YEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNL 330
Query: 148 CTYNTLMDGFAW--------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
T+N + G +G R DV +YN +I G C+ V +A +
Sbjct: 331 FTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHK 390
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
M++ G + TYN++ PD Y + ++G ++G
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+AM VF +I N LI GLC+ G + A + + M G PD+ TYN
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNE-MAEKGCKPDIWTYN 509
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+G CK G AN L+ D G P+
Sbjct: 510 LIINGLCKMGCLSDANHLIGDAITKGCIPD 539
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 31/237 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S L+G + P++ T+N+L+ G C + ++ A L ++ P+VIT
Sbjct: 518 MGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVIT 577
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMM 104
+NTL L EE++ F + C P+++T II+ LC G M
Sbjct: 578 YNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMK 637
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM-IQRDVNPNTCTYNTLMDGFAWW--- 160
+G+ PDVV+ + K G ++ A L M Q DV+ T TYN ++ F+
Sbjct: 638 SKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNM 697
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC D Y+Y +LI+G+CK NV E + +G TT+
Sbjct: 698 KMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTF 754
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---- 64
LLG + TP++V+F +LI G C G + A LF+ + + T+N +
Sbjct: 632 LLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAF 691
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMR 109
+AL LF EM C PD T +IDG CK G F+++ +G
Sbjct: 692 SEQLNMKMALRLFSEMKKNG---CDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFI 748
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
P + T + + L + K++EA ++ +M+Q+D+ P+T NT+ + K +
Sbjct: 749 PSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV--NTIFEA----DKKGHITYH 802
Query: 170 SYNILINGYCKDRNV 184
+Y L +G +D+ +
Sbjct: 803 AYEFLYDG-VRDKKI 816
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+PN+V +N++I G EG + +A LFK++ P+++T+N++ A
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ + P+ T N+I G G M + PDVVTL+++
Sbjct: 279 FLRQMVNKRVL---PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 335
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NP+ +YN +++G+A +KGC
Sbjct: 336 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA--TKGCLVDMTDLFDLMLGDGI 393
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D Y++N+LI Y ++ A+ + EM G++ D TY T+ A+
Sbjct: 394 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 453
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I + +I+ LC
Sbjct: 454 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 513
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL PD V YN+++ G+C G+ +KA + M G+EPN
Sbjct: 514 KLGRVMDAQNIFDLTV-NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 165/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 394 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 453
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GM D+V + + +
Sbjct: 454 KFNQMIDQ-GV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 510
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P+ YN LMDG+ A S G
Sbjct: 511 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 570
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPP---- 218
+V Y L+NGYCK +++ +SL REML GI+ Y+ LF A VP
Sbjct: 571 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKF 630
Query: 219 ----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
D Y + GL+KN EA+ +F + + I T N +IDG+ +
Sbjct: 631 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 690
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ L P VVTY+IMI KEG ++A + M+ G EPN
Sbjct: 691 RRVEEAKDLFASISRSR-LVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 71/334 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ I+ + ++V F+S+I LC GR+++A
Sbjct: 489 LISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ-------------------------- 522
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
N+F+ VN V PD V ++DG C G M+ G+ P+VV +
Sbjct: 523 NIFDLTVN---VGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ K G+++E L M+QR + P+T Y+ ++DG + G
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIA 639
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +YNI++ G K+R ++A+ L +E+ + ++ + T NT+
Sbjct: 640 MDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM---------------- 683
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDG+++ V EA +F++I + V ++ T + +I L K G ++ A D+F MQN
Sbjct: 684 -IDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSS-MQNA 741
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G P+ N ++ K+ + +A L ++E
Sbjct: 742 GCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDE 775
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + +++ +L GK +A+ LL +M A C +V
Sbjct: 183 PDVFSYSILLKSLCDQGKSGQADDLLRMM-------------------AEGGAVCSPNVV 223
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN +I+G+ K+ +V A L +EM+ GI D TYN++ A+
Sbjct: 224 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 283
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P++ Y I G G EA++VF + H + + T + L+ LCK G++
Sbjct: 284 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 343
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G PDV +YNIM++G+ +G
Sbjct: 344 KEARDVFDT-MAMKGQNPDVFSYNIMLNGYATKG 376
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + ++ +I GL GR + A F ++ ++ T
Sbjct: 585 IGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICT 644
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGFMMDQ 106
+N + L F+E + F + K +++T +IDG+ KD F
Sbjct: 645 YNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 704
Query: 107 GMR--PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
R P VVT ++M NL K+G +EEA + M PN+ N ++ ++
Sbjct: 705 RSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIV 764
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 765 RAGAYLSKI 773
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L++G C+ R A
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 215
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 154/344 (44%), Gaps = 70/344 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N V++ +LI GLC GRI EA +LF + C P V T+ L + ALNLF
Sbjct: 263 NEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLF 322
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
EM ++G P+V T V+ D L K+ KM+EA
Sbjct: 323 NEM----------------------------KEKGCEPNVHTYTVLIDGLCKENKMDEAR 354
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+L M ++ + P+ TYN L+DG+ S C + +YN LI G
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDS 220
CK R V A++L +ML + TYN+L M N + PD
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y+ +ID L K G V EA +F ++ LIDG CK+G++ +A+ +
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ N P+ TYN++I G CKE + ++A+ L+ M G++P
Sbjct: 535 ML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 151/344 (43%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
P++VT+N+LI G C EG I +A + + C PN T+N L A+
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
L +M+ P ++T ++I G CK M + G+ PD T +V
Sbjct: 425 ALLNKMLERK---LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFI 481
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D L K+G++EEA L + + + V N Y L+DG+ K C
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ Y+YN+LI G CK++ +++A SL +ML+ G++ TY L
Sbjct: 542 PNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTIL---------------- 585
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHML 281
I + K+G A+KVF NH L + T + G L+ D+
Sbjct: 586 -IGEMLKDGAFDHALKVF----NHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAK- 639
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ PD+VTY ++I G+ + G +A L M +TG +P+
Sbjct: 640 MNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPS 683
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 150/330 (45%), Gaps = 57/330 (17%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL--- 69
+L + +PN+ TFN+++ G C G ++EA K+ P+ T+ +L L
Sbjct: 184 ELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNK 243
Query: 70 ---NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTL 115
N +E + C+ + V+ TN+I GLC+ G +++ ++ P V T
Sbjct: 244 GVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAG-RINEALKLFADMTEDNCCPTVRTY 302
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI 175
V+ LS G+ EA L M + KGC +V++Y +LI
Sbjct: 303 TVLIYALSGSGRKVEALNLFNEMKE---------------------KGCEPNVHTYTVLI 341
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+G CK+ +++A + EM +G+ TYN L IDG K G
Sbjct: 342 DGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL-----------------IDGYCKEGM 384
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ +A ++ + ++ C T N LI GLCK ++ A + + +++ L+P ++TYN
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK-LSPSLITYN 443
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IHG CK + A LL M E GL P+
Sbjct: 444 SLIHGQCKVNDLESAYRLLSLMNENGLVPD 473
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 55/333 (16%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
S+IK C+ +L +F+K+N F P + +NT+ L++L+ F +++E +
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI-LMSLSKFL-LIDEMKTVYL 183
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
+++ + P++ T N M + K G + EA ++Q ++
Sbjct: 184 E-----------------LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLH 226
Query: 145 PNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
P+T TY +L+ G KGC+ + SY LI+G C+ + +A+ L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286
Query: 191 CREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYK 232
+M + TY L A++ P+ H YT IDGL K
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ EA K+ S + + ++ T N LIDG CK G + A++I LM++ P+
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILD-LMESNSCGPNTR 405
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN +I G CK+ + KA LL M E L P+
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPS 438
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 154/366 (42%), Gaps = 53/366 (14%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
+ LL + + P+ T++ I LC EGR+ EA LF + N + + L
Sbjct: 457 SAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALI 516
Query: 66 L---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQ 106
VA +L E M+N+ C P+ T +I+GLCK+ M+
Sbjct: 517 DGYCKVGKIDVAYSLLERMLND---ACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTM 573
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G++P VVT ++ + KDG + A + M+ P+ CTY + A++S+G
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL--HAYFSQGMLE 631
Query: 167 ----------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D+ +Y +LI+GY + A + M+ G + + L
Sbjct: 632 EVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILI 691
Query: 211 MAINN------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+++ + S+V + I ++K A+K+F + H C + +
Sbjct: 692 KNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIY 751
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
LI G C+ RL+ A + H M+ G++P YN ++ CK G + +A L+ M
Sbjct: 752 GALIAGFCQQERLEEAQGLVHH-MKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMV 810
Query: 319 ETGLEP 324
E GL P
Sbjct: 811 ENGLLP 816
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 154/380 (40%), Gaps = 81/380 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + LL R+L PN T+N LI+GLC E ++ EA+ L K+ P V+T
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581
Query: 61 FNTLALV---------ALNLFEEMV----------------------------------N 77
+ L AL +F MV N
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
E G++ PD+VT T +IDG + G M+D G +P + ++++ NLS + +
Sbjct: 642 EEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699
Query: 128 MEEANCLLEVMIQRDVNP-------NTCTYNTLMDGFAWW-SKGCRHDVYSYNILINGYC 179
M+E + + +VN T Y + F GC DV Y LI G+C
Sbjct: 700 MKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFC 759
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ +E+A L M G+ P +Y + +D K G EA
Sbjct: 760 QQERLEEAQGLVHHMKERGMS-----------------PSEDIYNSLLDCCCKLGVYAEA 802
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+++ A+ + + +E+ L+ GL G + A +FH L+ + G D V + ++I
Sbjct: 803 VRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL-SCGYNYDEVAWKVLID 861
Query: 300 GFCKEGQHQKANGLLLDMEE 319
G K + + L+ MEE
Sbjct: 862 GLLKRDLVDECSELIDIMEE 881
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 44/212 (20%)
Query: 151 NTLMDGFAWWS--KGCRHDVYSYNILINGYCKDR-----------------NVED---AV 188
T + F W + G +H+V+SY+ ++N + R ++ED +
Sbjct: 82 QTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVL 141
Query: 189 SLCREMLSEG---IRADATTYNTLFMAI------------------NNVPPDSHVYTTYI 227
+ R+M ++G + YNT+ M++ N + P+ + + +
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMV 201
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+G K G V+EA S I T LI G C+ + A+++F ++M G
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVF-LIMPQKGC 260
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ V+Y +IHG C+ G+ +A L DM E
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTE 292
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 174/375 (46%), Gaps = 83/375 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +++ PN+ TFN I+GLC +G I EAARL + + P+VI++NTL
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297
Query: 65 ---ALVALNLF-EEMVN------EFGV------ICK--------------------PDVV 88
LV + +MVN EF CK PD
Sbjct: 298 KHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEF 357
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T +++I+GLC DG M M++G + ++ N + LSK G + +A L++ M
Sbjct: 358 TYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM 417
Query: 139 IQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRNV 184
++ +P+ TYN +++G +KGC D++++N LI+GYCK RN+
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNM 477
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+ A+ + MLS GI D TYNTL ++GL K + + F
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTL-----------------LNGLCKARKLDNVVDTFK 520
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
A+ C I T N LI+ CK ++ A ++F M+ GLTPD+VT +I G C
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKE-MKTRGLTPDIVTLCTLICGLCSN 579
Query: 305 GQHQKANGLLLDMEE 319
G+ KA L + +E+
Sbjct: 580 GELDKAYELFVTIEK 594
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 55/350 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
+L + F P+ T++SLI GLC +G + A +F + ++I +NTL
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL L ++M+ E G C PD+ T +++GLCK G + D +G P
Sbjct: 403 KQGLVLQALQLMKDMM-EHG--CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D+ T N + D K M++A +L+ M+ + P+ TYNTL++G
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
A KGC ++ +YNILI +CKDR V +A+ L +EM + G+ D T TL
Sbjct: 520 KAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL------- 572
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I GL NG + +A ++F I +K + N +I+ C+ + +A
Sbjct: 573 ----------ICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAE 622
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+FH M PD TY +MI +CK G A+ LL+ GL P+
Sbjct: 623 KLFHK-MGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T +K C GR A RL + C+ N +++ + + A +L
Sbjct: 144 PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHL 203
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+EM+ + IC PD++T +I LCK G +M +G+ P++ T N+
Sbjct: 204 FDEMLKQ--GIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQG 260
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L + G ++EA LLE ++ + P+ +YNTL+ GF SK G +
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN 320
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAI-- 213
++YN +ING+CK +++A + R+ + +G D TY++L MA+
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFY 380
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+Y T + GL K G VL+A+++ + H C I T N +++GLCK+G
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A I + + G PD+ T+N +I G+CK+ KA +L M G+ P+
Sbjct: 441 CLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 157/375 (41%), Gaps = 88/375 (23%)
Query: 36 EGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM------VNEFGVICKPDV 87
+G++ EA +F++++ + C+P+V ++N + LV F + + + G+ PDV
Sbjct: 89 KGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY--PDV 146
Query: 88 VTCTNIIDGLCKDGF--------------------------------------------- 102
T T + C G
Sbjct: 147 YTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDE 206
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ QG+ PD++T N + L K G ++E+ L +++R V PN T+N + G
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ S+G DV SYN LI G+CK + +A +M++ G+ + TYNT
Sbjct: 267 IDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ PD Y++ I+GL +G + AM VF
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+I N L+ GL K G + A + +M++ G +PD+ TYN++++G CK G A
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH-GCSPDIWTYNLVVNGLCKMGCLSDA 445
Query: 311 NGLLLDMEETGLEPN 325
NG+L D G P+
Sbjct: 446 NGILNDAIAKGCIPD 460
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 131/310 (42%), Gaps = 44/310 (14%)
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---GMRPDV-- 112
VI + L AL +F ++ E G + C GL M+ MR +V
Sbjct: 13 VIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDS 72
Query: 113 -----VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWSK-- 162
V + +M D + GK++EA + E M D P+ +YN +M+ + ++S+
Sbjct: 73 KMLEGVYIGIMRD-YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAH 131
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
G DVY++ I + +C A+ L M +G +A +Y +
Sbjct: 132 KVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGF 191
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + PD + I L K G V E+ K+FS + +
Sbjct: 192 YKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNL 251
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N I GLC+ G + A + ++ + GLTPDV++YN +I GFCK + +A L
Sbjct: 252 FTFNIFIQGLCRKGAIDEAARLLESIV-SEGLTPDVISYNTLICGFCKHSKLVEAECYLH 310
Query: 316 DMEETGLEPN 325
M +G+EPN
Sbjct: 311 KMVNSGVEPN 320
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 33/217 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ TFN+LI G C + + +A + + P+VIT+NTL L + +V+
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518
Query: 79 FGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + C P+++T +I+ CKD M +G+ PD+VTL + L
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578
Query: 125 DGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+G++++A L V I+++ + +T +N +++ F C D
Sbjct: 579 NGELDKAYELF-VTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDN 637
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
Y+Y ++I+ YCK N++ A + E +S+G+ TT
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 165/344 (47%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
+PN+V + +LI LC GR+ +A F ++ PN++ F +L A
Sbjct: 410 LSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAG 469
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
LF EMVN+ G+ P+VV I+ LC +G +M G RPD+++ N +
Sbjct: 470 ELFFEMVNQ-GI--HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALI 526
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
GK +EA+ LL++M+ + PN CTYNTL+ +GYC
Sbjct: 527 RGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLL---------------------HGYC 565
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS------------------H 221
+D ++DA S+ +EMLS GI TYNT+ + S +
Sbjct: 566 RDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIY 625
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y ++GL KN V EA+K+F ++ + + I T N +I L K GR + A ++F +
Sbjct: 626 TYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATI 685
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PDV TY ++ +EG ++ +G+ +ME++G PN
Sbjct: 686 SAN-GLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPN 728
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 171/378 (45%), Gaps = 54/378 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNS-LIKGLCTEGRILEA-ARLFKKLNVFCCDPNV 58
MGR GF G IL + + N V + L+KGLC R+ EA L ++++ C PNV
Sbjct: 107 MGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNV 166
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------- 102
+++NTL A AL L M + C P++V+ +I+G +G
Sbjct: 167 VSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNL 226
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M DQG+ P+VVT ++ D L K ++ A + + MI + V PN TY L+ G+
Sbjct: 227 FLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLS 286
Query: 158 -AWWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
W + G D ++Y +L++ CK +A L M+ +GI+ D +
Sbjct: 287 IGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSI 346
Query: 206 YNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y + M N + P+ +++ K + EAM +F+ +
Sbjct: 347 YGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMR 406
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ LID LCK+GR+ A F+ ++ N G+ P++V + +++G C +
Sbjct: 407 QQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI-NEGVAPNIVVFTSLVYGLCTIDKW 465
Query: 308 QKANGLLLDMEETGLEPN 325
+KA L +M G+ PN
Sbjct: 466 EKAGELFFEMVNQGIHPN 483
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 59/217 (27%)
Query: 167 DVYSYNILI------------------------------------NGYCKDRNVEDAVS- 189
DV++Y+IL+ G C + V +A+
Sbjct: 93 DVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGV 152
Query: 190 LCREMLSEGIRADATTYNTLFMA---------------------INNVPPDSHVYTTYID 228
L R M G + +YNTL + + PP+ Y T I+
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVIN 212
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + G V +A +F + + + T +IDGLCK + A +F ++ + G+
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMI-DKGVR 271
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++VTY +IHG+ GQ ++ +L +M GLEP+
Sbjct: 272 PNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPD 308
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL +L PN T+N+L+ G C +GRI +A +F+++ P V+T
Sbjct: 532 VGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVT 591
Query: 61 FNTL--ALVALNLFEEM----VNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG-- 107
+NT+ L F E +N + + T I++GL K + M Q
Sbjct: 592 YNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLC 651
Query: 108 ---MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ D++T N+M L KDG+ E+A L + + P+ TY + +
Sbjct: 652 SKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAE 702
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 174/373 (46%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGD-CPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT N + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 463 AKELILEMLDRGI 475
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ LI +G++ +A +F K+ +P+ +T+ T+ +
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
A+ FE+M++E P + ++I LC K+ M+D+G+
Sbjct: 421 KSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D + N + D+ K+G++ E+ L ++M++ V PN TY+TL+DG+ K
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + D +YN LINGYCK +EDA+ L REM S G+ D TYN + +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN EA+++F + L T
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L ME
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSME 716
Query: 319 ETGLEPN 325
E G N
Sbjct: 717 ENGCTAN 723
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 163/391 (41%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++V++ ++I G EG + +A + ++ PNV+T+N++ A+ +
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEV 256
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
MV GV+ P+ T +I+ G C G M G+ PDVVT N + D
Sbjct: 257 LTSMVKN-GVM--PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K+G+ EA + + M +R + P TY TL+ G+A G +
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
Y ++ILI Y K V+ A+ + +M +G+ D TY T+
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433
Query: 211 -MAINNVPPDSHVYTTY-----------------------------------IDGLYKNG 234
M + P + VY + ID K G
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEG 493
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V+E+ K+F + I T + LIDG C G++ A + M + G+ PD VTY
Sbjct: 494 RVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLAS-MVSVGMKPDCVTY 552
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +I+G+CK + + A L +ME +G+ P+
Sbjct: 553 NTLINGYCKISRMEDALVLFREMESSGVSPD 583
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G R D + + L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TYN++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY L+ GFA KG R D ++ L+ G C D+ DA
Sbjct: 86 EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T N +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+ VT+N+LI G C R+ +A LF+++ P++IT+
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + E G + ++ T I+ GLCK+ + D+ +R
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 644
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+ +EA L + + P+ TY+ + +
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG + + + S+ R++L G A TY LFM
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY--LFM 749
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ + + T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 682 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 726
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 167/373 (44%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F +TF L+KGLC + R +A + +++ C P+V +
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 CTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ + PDVVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 221 EMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSE 280
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G+ D TY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYC 340
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD HV+ I K V EAM VFS + H
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQH 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T +I LCK G + A F ++ + GLTP+++ Y +IH C + K
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHSLCIFDKWDK 459
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 460 AEELILEMLDRGI 472
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 172/364 (47%), Gaps = 55/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
LL ++ + P+ FN LI + ++ EA +F K+ +PNV+T+ + +
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMR 109
A+ FE+M++E G+ P+++ T++I LC D + M+D+G+
Sbjct: 417 CKSGSVDDAMLYFEQMIDE-GLT--PNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGIC 473
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
+ + N + + K+G++ E+ L ++M++ V PN TY+TL+DG+
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
+ +S G + D +YN LINGYC+ ++DA++L +EM+S G+ + TYN + +
Sbjct: 534 LSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593
Query: 214 ----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ + Y + GL KN EA+++F + L T
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 653
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I L K+GR A D+F N GL P+ TY +M +G ++ + L M
Sbjct: 654 FNIMIGALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFFSM 712
Query: 318 EETG 321
E+ G
Sbjct: 713 EDNG 716
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 167/360 (46%), Gaps = 61/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
+P++VT++S+I LC + +A + + PN +T+N++ A+
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
++M ++ GV +PDVVT +++D LCK+G M +G+ PD+ T +
Sbjct: 288 FLKKMRSD-GV--EPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
+ G + E + LL++M++ ++P+ +N L+ +A K G
Sbjct: 345 GYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNP 404
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+V +Y +I CK +V+DA+ +M+ EG+ + Y +L ++
Sbjct: 405 NVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGL 265
+ ++ + + I K G V+E+ K+F IG V+T T LIDG
Sbjct: 465 LEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYST---LIDGY 521
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G++ A + M + G+ PD VTYN +I+G+C+ + A L +M +G+ PN
Sbjct: 522 CLAGKMDEATKLLSS-MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V++Y ILI C+ ++ + ++ +G R +A T+ L +
Sbjct: 87 VHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPL-----------------L 129
Query: 228 DGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP- 285
GL + +AM V + C+ + +C L+ GLC R + A ++ HM+ +
Sbjct: 130 KGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRG 189
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+Y +I+GF KEG KA +M + + P+
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPD 230
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL + P+ VT+N+LI G C R+ +A LFK++ PN+IT+
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584
Query: 62 NTLALVALNLFE----EMVNEFGV-ICKP----DVVTCTNIIDGLCKDGFMMDQGMRP-- 110
N ++ LF E V I K ++ T I+ GLCK+ + D+ +R
Sbjct: 585 N---IILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNN-LTDEALRMFQ 640
Query: 111 ---------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ T N+M L K G+ +EA L + PN TY + +
Sbjct: 641 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 700
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
D +++ NG D + + + RE+L G A TY
Sbjct: 701 LLEELDQLFFSMEDNGCTVDSGMLNFI--VRELLQRGEITRAGTY 743
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 167/373 (44%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F +TF L+KGLC + R +A + +++ C P+V +
Sbjct: 101 GRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 CTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ + PDVVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 221 EMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSE 280
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G+ D TY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYC 340
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD HV+ I K V EAM VFS + H
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQH 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T +I LCK G + A F ++ + GLTP+++ Y +IH C + K
Sbjct: 401 GLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHSLCIFDKWDK 459
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 460 AEELILEMLDRGI 472
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 176/368 (47%), Gaps = 55/368 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
LL ++ + P+ FN LI + ++ EA +F K+ +PNV+T+ + +
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMR 109
A+ FE+M++E P+++ T++I LC D + M+D+G+
Sbjct: 417 CKSGSVDDAMLYFEQMIDEG---LTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGIC 473
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
+ + N + + K+G++ E+ L ++M++ V PN TY+TL+DG+
Sbjct: 474 LNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKL 533
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
+ +S G + D +YN LINGYC+ ++DA++L +EM+S G+ + TYN + +
Sbjct: 534 LSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFH 593
Query: 214 ----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ + Y + GL KN EA+++F + L T
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRT 653
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L M
Sbjct: 654 FNIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 712
Query: 318 EETGLEPN 325
EE G N
Sbjct: 713 EENGCTAN 720
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 165/395 (41%), Gaps = 96/395 (24%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++V++ ++I G EG +A + ++ P+V+T++++ A+
Sbjct: 193 APDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GF---MMDQGMRPDVVTLNVMTD 120
+ MV GV+ P+ +T +I+ G C GF M G+ PDVVT N + D
Sbjct: 253 VLTTMVKN-GVM--PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
L K+G+ EA + + M +R + P+ TY TL+ G+A G
Sbjct: 310 YLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHP 369
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D + +NILI Y K V++A+ + +M G+ + TY +
Sbjct: 370 DHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYF 429
Query: 211 --MAINNVPPDSHVYTTYIDGL-----------------------------------YKN 233
M + P+ VYT+ I L K
Sbjct: 430 EQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKE 489
Query: 234 GFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G V+E+ K+F IG V+T T LIDG C G++ A + M + G+ PD
Sbjct: 490 GRVIESEKLFDLMVRIGVKPNVITYST---LIDGYCLAGKMDEATKLLSS-MFSVGMKPD 545
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN +I+G+C+ + A L +M +G+ PN
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPN 580
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V++Y ILI C+ ++ + ++ +G R +A T+ L +
Sbjct: 87 VHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPL-----------------L 129
Query: 228 DGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP- 285
GL + +AM V + C+ + +C L+ GLC R + A ++ HM+ +
Sbjct: 130 KGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRG 189
Query: 286 -GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+Y +I+GF KEG KA +M + + P+
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPD 230
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 30/218 (13%)
Query: 13 RILMSCFT----PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
++L S F+ P+ VT+N+LI G C R+ +A LFK++ PN+IT+N ++
Sbjct: 532 KLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN---IIL 588
Query: 69 LNLFE----EMVNEFGV-ICKP----DVVTCTNIIDGLCKDGFMMDQGMRP--------- 110
LF E V I K ++ T I+ GLCK+ + D+ +R
Sbjct: 589 QGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNN-LTDEALRMFQNLCLTDL 647
Query: 111 --DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV 168
+ T N+M L K G+ +EA L + + P+ TY+ + + D
Sbjct: 648 QLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDD 707
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
++ NG + + + S+ R++L G A TY
Sbjct: 708 LFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY 743
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R L ++ S +PN++T+N +++GL R A L+ + + T
Sbjct: 559 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELST 618
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 619 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 678
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 679 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 723
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 174/375 (46%), Gaps = 83/375 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +++ PN+ TFN I+GLC +G I EAARL + + P+VI++NTL
Sbjct: 238 LFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFC 297
Query: 65 ---ALVALNLF-EEMVN------EFGV------ICK--------------------PDVV 88
LV + +MVN EF CK PD
Sbjct: 298 KHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEF 357
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T +++I+GLC DG M M++G + ++ N + LSK G + +A L++ M
Sbjct: 358 TYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM 417
Query: 139 IQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRNV 184
++ +P+ TYN +++G +KGC D++++N LI+GYCK RN+
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNM 477
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+ A+ + MLS GI D TYNTL ++GL K + + F
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTL-----------------LNGLCKARKLDNVVDTFK 520
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
A+ C I T N LI+ CK ++ A ++F M+ GLTPD+VT +I G C
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKE-MKTRGLTPDIVTLCTLICGLCSN 579
Query: 305 GQHQKANGLLLDMEE 319
G+ KA L + +E+
Sbjct: 580 GELDKAYELFVTIEK 594
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 163/350 (46%), Gaps = 55/350 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
+L + F P+ T++SLI GLC +G + A +F + ++I +NTL
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL L ++M+ E G C PD+ T +++GLCK G + D +G P
Sbjct: 403 KQGLVLQALQLMKDMM-EHG--CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIP 459
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D+ T N + D K M++A +L+ M+ + P+ TYNTL++G
Sbjct: 460 DIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
A KGC ++ +YNILI +CKDR V +A+ L +EM + G+ D T TL
Sbjct: 520 KAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTL------- 572
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I GL NG + +A ++F I +K + N +I+ C + +A
Sbjct: 573 ----------ICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAE 622
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+FH M PD TY +MI +CK G A+ LL+ GL P+
Sbjct: 623 KLFHK-MGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T +K C GR A RL + C+ N +++ + + A +L
Sbjct: 144 PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHL 203
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+EM+ + IC PD++T +I LCK G +M +G+ P++ T N+
Sbjct: 204 FDEMLKQ--GIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQG 260
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L + G ++EA LLE ++ + P+ +YNTL+ GF SK G +
Sbjct: 261 LCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPN 320
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAI-- 213
++YN +ING+CK +++A + R+ + +G D TY++L MA+
Sbjct: 321 EFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFY 380
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+Y T + GL K G VL+A+++ + H C I T N +++GLCK+G
Sbjct: 381 EAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A I + + G PD+ T+N +I G+CK+ KA +L M G+ P+
Sbjct: 441 CLSDANGILNDAIAK-GCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPD 495
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 157/375 (41%), Gaps = 88/375 (23%)
Query: 36 EGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM------VNEFGVICKPDV 87
+G++ EA +F++++ + C+P+V ++N + LV F + + + G+ PDV
Sbjct: 89 KGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIY--PDV 146
Query: 88 VTCTNIIDGLCKDGF--------------------------------------------- 102
T T + C G
Sbjct: 147 YTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDE 206
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ QG+ PD++T N + L K G ++E+ L +++R V PN T+N + G
Sbjct: 207 MLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGA 266
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ S+G DV SYN LI G+CK + +A +M++ G+ + TYNT
Sbjct: 267 IDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ PD Y++ I+GL +G + AM VF
Sbjct: 327 IINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKG 386
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+I N L+ GL K G + A + +M++ G +PD+ TYN++++G CK G A
Sbjct: 387 FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEH-GCSPDIWTYNLVVNGLCKMGCLSDA 445
Query: 311 NGLLLDMEETGLEPN 325
NG+L D G P+
Sbjct: 446 NGILNDAIAKGCIPD 460
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 131/310 (42%), Gaps = 44/310 (14%)
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---GMRPDV-- 112
VI + L AL +F ++ E G + C GL M+ MR +V
Sbjct: 13 VIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDS 72
Query: 113 -----VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWSK-- 162
V + +M D + GK++EA + E M D P+ +YN +M+ + ++S+
Sbjct: 73 KMLEGVYIGIMRD-YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAH 131
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
G DVY++ I + +C A+ L M +G +A +Y +
Sbjct: 132 KVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGF 191
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + PD + I L K G V E+ K+FS + +
Sbjct: 192 YKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNL 251
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N I GLC+ G + A + ++ + GLTPDV++YN +I GFCK + +A L
Sbjct: 252 FTFNIFIQGLCRKGAIDEAARLLESIV-SEGLTPDVISYNTLICGFCKHSKLVEAECYLH 310
Query: 316 DMEETGLEPN 325
M +G+EPN
Sbjct: 311 KMVNSGVEPN 320
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 33/217 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ TFN+LI G C + + +A + + P+VIT+NTL L + +V+
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518
Query: 79 FGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + C P+++T +I+ CKD M +G+ PD+VTL + L
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578
Query: 125 DGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+G++++A L V I+++ + +T +N +++ F C D
Sbjct: 579 NGELDKAYELF-VTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDN 637
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
Y+Y ++I+ YCK N++ A + E +S+G+ TT
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTT 674
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 162/364 (44%), Gaps = 60/364 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F +L R + + P+ VT+N I GLC R+ +A +L KK++ C P +T+
Sbjct: 22 RLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 81
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L L+ A+ + E+MV + P + T T +IDGL K G M
Sbjct: 82 ALVDGLLKAGRLDEAMAVLEQMVEKGN---SPTLKTYTVVIDGLSKAGRVEEARRIFVDM 138
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN----PNTCTYNTLMDGF-- 157
+ G RPD + L K GK EEA L + R + P+ TY +L+DG
Sbjct: 139 LGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCK 198
Query: 158 -------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+G D +Y +I+G CK VE+ EM + G DA
Sbjct: 199 AGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAV 258
Query: 205 TYNTL---FMAINNVPPDSHVY------------TTY---IDGLYKNGFVLEAMKVFSAI 246
TY L FM +P VY TY +DGL K G V EA F A+
Sbjct: 259 TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM 318
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
CV T+ T + L+DG C G + A ++F ++ + G P++V+YNI+I G C+ G+
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML-DRGCEPNLVSYNIIIRGLCRAGK 377
Query: 307 HQKA 310
KA
Sbjct: 378 LAKA 381
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 149/331 (45%), Gaps = 69/331 (20%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75
M C +P+MV F +I GLC E R+ EA + ++ C+P+ +T+N
Sbjct: 1 MPC-SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVF----------- 48
Query: 76 VNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDNLSKD 125
IDGLCK D F + + M P VT + D L K
Sbjct: 49 ------------------IDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKA 90
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
G+++EA +LE M+++ +P TY ++DG + + GCR D + Y
Sbjct: 91 GRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 150
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI G CK E+A +L +E + A A PD YT+ IDGL
Sbjct: 151 TALIKGLCKSGKPEEAYALYKEANARKHHATAV-------------PDVVTYTSLIDGLC 197
Query: 232 KNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G +LEA +VF + + T +IDGLCK+GR++ + FH M+N G PD
Sbjct: 198 KAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHE-MRNRGYEPD 256
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
VTY +I GF K KA+ + M ++G
Sbjct: 257 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 287
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 156/344 (45%), Gaps = 60/344 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNVITFNTLA---------LV 67
P+ + +LIKGLC G+ EA L+K+ N P+V+T+ +L L
Sbjct: 145 PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILE 204
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A +F++ E G I PD VT T+IIDGLCK G M ++G PD VT
Sbjct: 205 ARQVFDDEAVERGFI--PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAA 262
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ D K + +A+ + M+Q +T TYN ++DG A +G
Sbjct: 263 LIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERG 322
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C V +Y+ L++G+C + NV AV L R ML G + +YN +
Sbjct: 323 CVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII-------------- 368
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML-- 281
I GL + G + +A F + + + T N + GLC+ RL D +
Sbjct: 369 ---IRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ--RLDTVSDGVELFES 423
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G +P++ +Y+I++ G C+ G + A + +M G+ P+
Sbjct: 424 MVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPD 467
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 85/333 (25%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F P+ VT+ S+I GLC GR+ E F ++ +P+ +T+ L A
Sbjct: 218 FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAH 277
Query: 70 NLFEEMVNEFGVI--------------------------------CKPDVVTCTNIIDGL 97
++ +M+ V+ C VVT + ++DG
Sbjct: 278 RVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 337
Query: 98 CKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C +G M+D+G P++V+ N++ L + GK+ +A E ++QR + P+
Sbjct: 338 CSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV 397
Query: 148 CTYNTLMDGF---------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T+N + G + S+G +++SY+IL++G C+ +E A+ + R
Sbjct: 398 YTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFR 457
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
EM+S G+ D +NTL I L G V EA++VF + +
Sbjct: 458 EMVSRGVAPDVVVFNTL-----------------IRWLCIAGRVDEALEVFREL-ERRSA 499
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDI-FHMLMQN 284
+ L+DGL + R++ A + FHM +Q
Sbjct: 500 PDAWSYWSLLDGLSRCERMEEARLLSFHMKLQG 532
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 29/206 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L R+L PN+V++N +I+GLC G++ +A F+KL P+V TF
Sbjct: 341 GNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTF 400
Query: 62 NT--------LALVA--LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N L V+ + LFE MV++ P++ + + ++DG+C+ G
Sbjct: 401 NAFLHGLCQRLDTVSDGVELFESMVSQG---TSPNLHSYSILMDGICRAGGLEVALEIFR 457
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM--IQRDVNPNTCTYNTLMDGFAW 159
M+ +G+ PDVV N + L G+++EA LEV ++R P+ +Y +L+DG +
Sbjct: 458 EMVSRGVAPDVVVFNTLIRWLCIAGRVDEA---LEVFRELERRSAPDAWSYWSLLDGLSR 514
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVE 185
+ + S+++ + G C R+ +
Sbjct: 515 CERMEEARLLSFHMKLQG-CAPRHYD 539
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 163/364 (44%), Gaps = 56/364 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
LL ++L + N T N I+GLC GR+ EA L + ++ + P+V+T+NTL
Sbjct: 136 ALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIA-PDVVTYNTLMRGL 194
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A M+N+ C PD T IIDG CK + + +G
Sbjct: 195 CKDSKVQEAAQYLRRMMNQG---CIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFV 251
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------- 160
PD VT + + L +G +E A L +D+ P+ YN+L+ G
Sbjct: 252 PDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 311
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
GC D+++YNI+ING CK N+ DA + + + +G D T+NT+
Sbjct: 312 MNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCK 371
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + + PD+ Y + ++GL K G E + F + C T
Sbjct: 372 RLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAIT 431
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+ CKI +L+ A + + Q+ GL PD +++N +IHGFC+ G A L +
Sbjct: 432 YNILIENFCKINQLEEASGVIVRMSQD-GLVPDTISFNTLIHGFCRNGDLDGAYLLFQKL 490
Query: 318 EETG 321
+E G
Sbjct: 491 DEKG 494
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 155/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + F P+ VT+ SLI GLC EG + A LF + P+++ +N+L
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
L AL + EMV + C PD+ T +I+GLCK G + D +G P
Sbjct: 301 RQGLILHALQVMNEMVEDG---CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLP 357
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DV T N M D K K++ A L+E M + P+ TYN++++G K
Sbjct: 358 DVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETF 417
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GCR + +YNILI +CK +E+A + M +G+ D ++NTL
Sbjct: 418 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTL------- 470
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G +NG + A +F + T +T N LI +++A
Sbjct: 471 ----------IHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 520
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ G PD+ TY +++ G CK +A L +M G P+
Sbjct: 521 IFGEMISK-GYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPS 568
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 154/388 (39%), Gaps = 104/388 (26%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------- 64
R+L + P+ T IK C GR A RL + L CD + + T+
Sbjct: 35 RMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHG 94
Query: 65 -ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
A +LF+EM L +D F PDV T N + L
Sbjct: 95 HGYDARHLFDEM---------------------LRRDVF-------PDVATFNNVLHALC 126
Query: 124 KDGKMEEANCLLEVMIQRD----------------------------------VNPNTCT 149
+ G + E+ LL +++R + P+ T
Sbjct: 127 QKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVT 186
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YNTLM G SK GC D ++YN +I+GYCK +++A L ++ +
Sbjct: 187 YNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAI 246
Query: 196 SEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVL 237
+G D TY +L + ++ PD VY + + GL + G +L
Sbjct: 247 FKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLIL 306
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A++V + + C I T N +I+GLCK+G + A + + + G PDV T+N M
Sbjct: 307 HALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVK-GYLPDVFTFNTM 365
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+CK + A L+ M G+ P+
Sbjct: 366 IDGYCKRLKLDSALQLVERMWMYGIAPD 393
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 148/322 (45%), Gaps = 49/322 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVAL-NLFEEM 75
P++V +NSL+KGLC +G IL A ++ ++ C P++ T+N + L + N+ +
Sbjct: 285 LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAA 344
Query: 76 VNEFGVICK---PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
V I K PDV T +IDG CK M G+ PD +T N + + L
Sbjct: 345 VVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGL 404
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K GK +E N E MI + PN TYN L++ F ++ G D
Sbjct: 405 CKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDT 464
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------- 215
S+N LI+G+C++ +++ A L +++ +G A A T+N L A ++
Sbjct: 465 ISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGE 524
Query: 216 -----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD + Y +DG K V A + + + V ++ T +++ L R
Sbjct: 525 MISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHR 584
Query: 271 LKIAWDIFHMLMQNPGLTPDVV 292
+ A I H++++ G+ P+VV
Sbjct: 585 VSEAVAIIHIMVRM-GVVPEVV 605
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 147/324 (45%), Gaps = 46/324 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S V++ ++ + P++ TFN++I G C ++ A +L +++ ++ P+ IT
Sbjct: 337 MGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAIT 396
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF-- 102
+N++ A FEEM+ + C+P+ +T +I+ CK G
Sbjct: 397 YNSVLNGLCKAGKAKEVNETFEEMILKG---CRPNAITYNILIENFCKINQLEEASGVIV 453
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M G+ PD ++ N + ++G ++ A L + + ++ + T+N L+ ++
Sbjct: 454 RMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 513
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKG + D+Y+Y +L++G CK NV+ A EM+S+G T+
Sbjct: 514 NMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFG 573
Query: 208 TLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ +A+N+ ++ I + + G V E + + + I L++ L
Sbjct: 574 RVLNSLAMNHRVSEA---VAIIHIMVRMGVVPEVVDTILSTDKKE----IAAPKILVEEL 626
Query: 266 CKIGRLKI-AWDIFHMLMQNPGLT 288
K G + +++ H +++ LT
Sbjct: 627 MKKGHISYPTYEVLHEGVRDNKLT 650
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 33/233 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P N + D L ++A+ + M+ V P+ T+ + F
Sbjct: 5 GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+ +GC +Y ++ G + DA L EML + D T+N + A
Sbjct: 65 LRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHA 124
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
L + G ++E+ + + + + TCN I GLC+ GRL+
Sbjct: 125 -----------------LCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLE 167
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + + + + PDVVTYN ++ G CK+ + Q+A L M G P+
Sbjct: 168 EAVALVESM--DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPD 218
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 166/356 (46%), Gaps = 56/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++ +NS+I GLC ++ EA ++ PNV T+ L VA
Sbjct: 514 PDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRY 573
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+EM+ G P+ V CT +IDG CK+G M+ + + PDV T + +
Sbjct: 574 FKEML---GCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHG 630
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L ++GK++ A LL +++ + P+ TYN+++ GF KG +
Sbjct: 631 LLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPN 690
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +YN LING CK +E A L + +G+ +A TY T+
Sbjct: 691 IITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFD 750
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + VPPDS VY+ IDG K G +A+ +F K + + N L+DG CK G
Sbjct: 751 EMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLE-SVQKGFASTSSLNALMDGFCKSG 809
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A + M + + PD VTY I+I CK G ++A +DM++ L PN
Sbjct: 810 KVIEANQLLED-MVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPN 864
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A G LL + +P++VT+N +I GLC G + EA L K ++ +V T+
Sbjct: 250 GNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTY 309
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A + EEM F KP V T +IDG + G
Sbjct: 310 SILIDGFGKQKRCTEAKLMLEEM---FSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEE 366
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G++ ++ T N + + K G ME+A+ LL MI + P+T TYN +++G+
Sbjct: 367 MLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN 426
Query: 163 GCR--------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
R Y+ ++ING C+ ++EDA + M+S G++
Sbjct: 427 TSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVK-------- 478
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P++ +YTT I G + G EA+++ + + N +I GLCK
Sbjct: 479 ---------PNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKS 529
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A D + + M GL P+V TY +IHG+CK G+ Q A+ +M G+ PN
Sbjct: 530 RKMEEAKD-YLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 146/332 (43%), Gaps = 55/332 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL + S P T +I GLC G I +A+R+F+ + PN + + TL V
Sbjct: 433 LLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHV 492
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
F+E V V+ K +G++PDV+ N + L K K
Sbjct: 493 QEGRFQEAVRILKVMDK---------------------KGVQPDVLCYNSVIIGLCKSRK 531
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI-------------- 173
MEEA L MI+R + PN TY L+ G+ + D Y +
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTA 591
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI+GYCK+ + +A S+ R ML +V PD Y+ I GL +N
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGR-----------------SVHPDVRTYSALIHGLLRN 634
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + AM++ S V + T N +I G CK G + A+ + H M G++P+++T
Sbjct: 635 GKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQL-HEYMCQKGISPNIIT 693
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I+G CK G+ ++A L + GL N
Sbjct: 694 YNALINGLCKAGEIERARELFDGIPGKGLAHN 725
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 157/353 (44%), Gaps = 56/353 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALN 70
PN V +LI G C EG EA +F+ + P+V T++ L L+ A+
Sbjct: 583 APNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAME 642
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L E + E G++ PDV T +II G CK G +M +G+ P+++T N + +
Sbjct: 643 LLSEFL-EKGLV--PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALIN 699
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRH 166
L K G++E A L + + + + N TY T++DG+ KG
Sbjct: 700 GLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPP 759
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D + Y+ LI+G K+ N E A+SL E + +G A ++ N L
Sbjct: 760 DSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLL 818
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M +V PD YT ID K GF+ EA + F + + T L+ G
Sbjct: 819 EDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMA 878
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
GR + +F ++ + PD VT+++MI KEG H K L+ DM + G
Sbjct: 879 GRRSEMFALFDEMIAKD-IEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKG 930
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 72/346 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++ T+ LI G E RL ++ C P+++T+N
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNV------------------ 276
Query: 82 ICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+I GLC+ G M +G+ DV T +++ D K + EA
Sbjct: 277 -----------VIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
+LE M + + P Y L+DGF ++G + ++++YN L+ G
Sbjct: 326 KLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKG 385
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
CK ++E A +L EM+ GI+ D TYN + M +N+ P
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
++ I+GL ++G + +A +VF + + LI G + GR + A I
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILK 505
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M G+ PDV+ YN +I G CK + ++A L++M E GL+PN
Sbjct: 506 -VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPN 550
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 54/212 (25%)
Query: 166 HDVYSY-----------------------------------NILINGYCKDRNVEDAVSL 190
HDVY+Y N++I G C+ V++A L
Sbjct: 234 HDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFEL 293
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
+ M +G+ AD TY+ L M + P YT IDG +
Sbjct: 294 KKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMR 353
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G EA +V + L + T N L+ G+CK G ++ A + + ++ G+ PD
Sbjct: 354 QGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIM-VGIKPDTQ 412
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
TYN MI G+ KE + LL +M+++ L P
Sbjct: 413 TYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVP 444
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 153 LMDGFAW--WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
L+D F W + G + S++IL C R A S+ +M+ + ++L
Sbjct: 84 LLDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLI 143
Query: 211 MAINNVPPDSH-------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ ++ V+ IDG K G EA+ F + V+ +
Sbjct: 144 KSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLC 203
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
CN L+ L K +L++ W ++ +++ + DV TY +I+ + G ++ LL +M
Sbjct: 204 CNGLLSDLLKANKLELFWRFYNGMLE-ANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEM 262
Query: 318 EETGLEPN 325
EE G P+
Sbjct: 263 EEKGCSPS 270
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN +T+ +L+ G GR E LF ++ +P+ +T++ + + L L
Sbjct: 863 PNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKL 922
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
++M+ + G + K C +ID LC+ + + QG+ + T + +
Sbjct: 923 VDDMLKKGGNVSKN---VCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRC 979
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
K GKM+ A +L+ M++ P++ N L++
Sbjct: 980 FHKAGKMDGAARVLKSMVRFKWVPDSTELNDLIN 1013
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 175/403 (43%), Gaps = 86/403 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
GF ++G +L FT N+ N ++KGLC G + EA L +++ P+++++NTL
Sbjct: 128 GFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLIN 187
Query: 65 ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDGF------------------ 102
L +E V C P+ VTCT ++DGLCKDG
Sbjct: 188 GLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDA 247
Query: 103 ---------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
M+ +G+ +VVT + + L + G+ +EAN +L
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307
Query: 136 EVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKD 181
M + ++P+ TY L+DG KG +YN+L++G CK+
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKE 367
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------------------NNVPPDSH 221
V DA + R M+ +G +AD TYNTL + N + P+
Sbjct: 368 GLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVF 427
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ I GL K G + +A+K+ + + T N L+ G K G++K A +++ +
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ + G P+ TY+I+I GFCK A GL +M GL P
Sbjct: 488 L-DLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNP 529
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 170/376 (45%), Gaps = 55/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F ++V + +LI G C G + LF ++ NV+T+
Sbjct: 228 GRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTY 287
Query: 62 NTL--ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+ L L L ++E + E G+ PDVVT T +IDGLCKDG M
Sbjct: 288 SCLVHGLCRLGQWKEANTVLNAMAEHGI--HPDVVTYTGLIDGLCKDGRATHAMDLLNLM 345
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+++G P VT NV+ L K+G + +A +L +MI++ + TYNTLM G
Sbjct: 346 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 405
Query: 158 ---------AWWSKGC-RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ ++ C +V+++N+LI G CK+ + AV + R+M+ +G + TYN
Sbjct: 406 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 465
Query: 208 TLF---MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L + + P+S Y+ IDG K + A +F + H
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 525
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ N L+ LCK G L+ A +F M N PD++++N MI G K G Q
Sbjct: 526 GLNPALFDYNTLMASLCKEGSLEQAKSLFQE-MGNANCEPDIISFNTMIDGTLKAGDFQF 584
Query: 310 ANGLLLDMEETGLEPN 325
L + M E GL P+
Sbjct: 585 VKELQMKMVEMGLRPD 600
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 159/356 (44%), Gaps = 58/356 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA+ LL ++ P+ VT+N L+ GLC EG +++A ++ + + +V+T+
Sbjct: 333 GRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTY 392
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL AL LF M + + +P+V T +I GLCK+G
Sbjct: 393 NTLMKGLCDKGKVDEALKLFNSMFDNENCL-EPNVFTFNMLIGGLCKEGRLTKAVKIHRK 451
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G ++VT N++ K GK++EA L + ++ PN+ TY+ L+DGF
Sbjct: 452 MVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRM 511
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ G ++ YN L+ CK+ ++E A SL +EM + D ++NT
Sbjct: 512 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNT 571
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ IDG K G FV E +G LT T LI+ L
Sbjct: 572 M-----------------IDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST---LINRL 611
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
K+G L A ++ + G TPD + Y+ ++ G +G + LL M G
Sbjct: 612 SKLGELDEAKSALERMVAS-GFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 666
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVIT 60
G+ L ++L F PN T++ LI G C + R+L A+ LF ++ +P +
Sbjct: 475 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC-KMRMLNIAKGLFCEMRTHGLNPALFD 533
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+NTL A +LF+EM N C+PD+++ +IDG K G
Sbjct: 534 YNTLMASLCKEGSLEQAKSLFQEMGN---ANCEPDIISFNTMIDGTLKAGDFQFVKELQM 590
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M++ G+RPD +T + + + LSK G+++EA LE M+ P+ Y++L+ G + S
Sbjct: 591 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLS--S 648
Query: 162 KGCRHDVYS--YNILINGYCKDRNVEDAVSLC 191
KG ++ + + + G DR + + C
Sbjct: 649 KGDTTEIINLLHQMAAKGTVLDRKIVSTILTC 680
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 168/339 (49%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+N++++ LC G++ +A + + C P+VIT+ L A+
Sbjct: 156 APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMK 215
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM N+ KPDVVT +I+G+CK+G M G +P+V+T N++
Sbjct: 216 LLDEMRNKGS---KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 272
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ GC
Sbjct: 273 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN L++G+CK++ ++ A+ M+S G D TYNTL A
Sbjct: 333 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA-------------- 378
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L K+G V A+++ + + + C + T N +IDGL K+G+ + A + M+ G
Sbjct: 379 ---LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MRRKG 434
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD++TY+ ++ G +EG+ +A D+E G+ PN
Sbjct: 435 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 54/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LI G+C EGR+ EA + + + C PNVIT N + + A L
Sbjct: 227 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 286
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M+ + C P VVT +I+ LC+ G M G P+ ++ N +
Sbjct: 287 LSDMLRKG---CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 343
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K+ KM+ A L++M+ R P+ TYNTL+ SKGC
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 403
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I+G K E A+ L EM +G++ D TY++L +
Sbjct: 404 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-----------------V 446
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + G V EA+K F + T N ++ GLCK + A D F M +
Sbjct: 447 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISKRC 505
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P TY I+I G EG ++A LL ++ GL
Sbjct: 506 KPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 540
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 151/345 (43%), Gaps = 68/345 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ SLI+G C G+ +A + + L P+VIT+
Sbjct: 71 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 130
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQ-GMRPDVVT 114
N L I G CK G + +D+ + PDVVT
Sbjct: 131 NVL-----------------------------ISGYCKSGEIDNALQVLDRMNVAPDVVT 161
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------- 161
N + L GK+++A +L+ +Q++ P+ TY L++ S
Sbjct: 162 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 221
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
KG + DV +YN+LING CK+ +++A+ M S G + + T+N + +
Sbjct: 222 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS-------- 273
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ G ++A K+ S + C ++ T N LI+ LC+ G L A DI
Sbjct: 274 ---------MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 324
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G TP+ ++YN ++HGFCKE + +A L M G P+
Sbjct: 325 -MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L +P++VTFN LI LC +G + A + +K+ + C PN +++
Sbjct: 278 GRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 337
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ + MV+ C PD+VT ++ LCKDG
Sbjct: 338 NPLLHGFCKEKKMDRAIEYLDIMVSRG---CYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G P ++T N + D LSK GK E A LL+ M ++ + P+ TY++L+ G + K
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 454
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G R + +YN ++ G CK R + A+ M+S+ + TY
Sbjct: 455 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 514
Query: 209 LFMAI 213
L I
Sbjct: 515 LIEGI 519
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRH 166
L ++G++E+ LE M+ R P+ +L+ GF A W G
Sbjct: 66 RLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVP 125
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV +YN+LI+GYCK +++A+ + M NV PD Y T
Sbjct: 126 DVITYNVLISGYCKSGEIDNALQVLDRM--------------------NVAPDVVTYNTI 165
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ L +G + +AM+V +C + T LI+ CK + A + M+N G
Sbjct: 166 LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE-MRNKG 224
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTYN++I+G CKEG+ +A L +M G +PN
Sbjct: 225 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 263
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++ L +NG + + K ++ + I C LI G C+IG+ K A + +L Q+
Sbjct: 63 HLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS- 121
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKA 310
G PDV+TYN++I G+CK G+ A
Sbjct: 122 GAVPDVITYNVLISGYCKSGEIDNA 146
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T++SL+ GL EG++ EA + F L PN IT
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 476
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102
+N++ L A++ M+++ CKP T T +I+G+ +G
Sbjct: 477 YNSIMLGLCKSRQTDRAIDFLAYMISKR---CKPTEATYTILIEGIAYEGL 524
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 168/339 (49%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+N++++ LC G++ +A + + C P+VIT+ L A+
Sbjct: 213 APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMK 272
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM N+ KPDVVT +I+G+CK+G M G +P+V+T N++
Sbjct: 273 LLDEMRNKGS---KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 329
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ GC
Sbjct: 330 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN L++G+CK++ ++ A+ M+S G D TYNTL A
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA-------------- 435
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L K+G V A+++ + + + C + T N +IDGL K+G+ + A + M+ G
Sbjct: 436 ---LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MRRKG 491
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD++TY+ ++ G +EG+ +A D+E G+ PN
Sbjct: 492 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 54/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LI G+C EGR+ EA + + + C PNVIT N + + A L
Sbjct: 284 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 343
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M+ + C P VVT +I+ LC+ G M G P+ ++ N +
Sbjct: 344 LSDMLRKG---CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 400
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K+ KM+ A L++M+ R P+ TYNTL+ SKGC
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 460
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I+G K E A+ L EM +G++ D TY++L +
Sbjct: 461 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-----------------V 503
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + G V EA+K F + T N ++ GLCK + A D F M +
Sbjct: 504 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISKRC 562
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P TY I+I G EG ++A LL ++ GL
Sbjct: 563 KPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 597
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 152/345 (44%), Gaps = 68/345 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ SLI+G C G+ +A + + L P+VIT+
Sbjct: 128 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 187
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQ-GMRPDVVT 114
N L I G CK G + +D+ + PDVVT
Sbjct: 188 NVL-----------------------------ISGYCKSGEIDNALQVLDRMNVAPDVVT 218
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------- 161
N + L GK+++A +L+ +Q++ P+ TY L++ S
Sbjct: 219 YNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 278
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
KG + DV +YN+LING CK+ +++A+ M S G + + T+N + ++ +
Sbjct: 279 NKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCST---- 334
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
G ++A K+ S + C ++ T N LI+ LC+ G L A DI
Sbjct: 335 -------------GRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 381
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G TP+ ++YN ++HGFCKE + +A L M G P+
Sbjct: 382 -MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L +P++VTFN LI LC +G + A + +K+ + C PN +++
Sbjct: 335 GRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 394
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A+ + MV+ C PD+VT ++ LCKDG
Sbjct: 395 NPLLHGFCKEKKMDRAIEYLDIMVSRG---CYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G P ++T N + D LSK GK E A LL+ M ++ + P+ TY++L+ G + K
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 511
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G R + +YN ++ G CK R + A+ M+S+ + TY
Sbjct: 512 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 571
Query: 209 LFMAI 213
L I
Sbjct: 572 LIEGI 576
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRH 166
L ++G++E+ LE M+ R P+ +L+ GF A W G
Sbjct: 123 RLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVP 182
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV +YN+LI+GYCK +++A+ + M NV PD Y T
Sbjct: 183 DVITYNVLISGYCKSGEIDNALQVLDRM--------------------NVAPDVVTYNTI 222
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ L +G + +AM+V +C + T LI+ CK + A + M+N G
Sbjct: 223 LRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDE-MRNKG 281
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTYN++I+G CKEG+ +A L +M G +PN
Sbjct: 282 SKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPN 320
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++ L +NG + + K ++ + I C LI G C+IG+ K A + +L Q+
Sbjct: 120 HLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS- 178
Query: 286 GLTPDVVTYNIMIHGFCKEGQ 306
G PDV+TYN++I G+CK G+
Sbjct: 179 GAVPDVITYNVLISGYCKSGE 199
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T++SL+ GL EG++ EA + F L PN IT
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 533
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
+N++ L A++ M+++ CKP T T +I+G+ +G +
Sbjct: 534 YNSIMLGLCKSRQTDRAIDFLAYMISKR---CKPTEATYTILIEGIAYEGLAKE 584
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 166/368 (45%), Gaps = 58/368 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F +TF L+KGLC + R +A + ++ C PNV +
Sbjct: 98 GRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFS 157
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
L + AL L + M ++ G C PDVV +I+G K+G
Sbjct: 158 CTILLKGLCDENRSQEALELLQMMPDDGG-DCPPDVVLYNTVINGFFKEGDPDKAYATYH 216
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M DQG+ PDVVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 217 EMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSG 276
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV + N+L++ CK+R +A + M G++ D TTY
Sbjct: 277 QLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYC 336
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ HV+ I K V EAM VFS +
Sbjct: 337 TLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQ 396
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ--NPGLTPDVVTYNIMIHGFCKEGQH 307
+ID LCK+GR+ +D L Q N GLTPD++ Y +IHGFC +
Sbjct: 397 GLSPNAVNYRTVIDVLCKLGRV---YDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKW 453
Query: 308 QKANGLLL 315
+KA L+
Sbjct: 454 EKAEELIF 461
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P++ T +V+ + G+++ L +I++ T+ L+ G +
Sbjct: 82 PNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDI 141
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
GC +V+S IL+ G C + ++A+ L + M +G
Sbjct: 142 VLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDG---------------G 186
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ PPD +Y T I+G +K G +A + + + + + T + +I LCK + A
Sbjct: 187 DCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKA 246
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + +++N G+ P+ TYN ++HG+C GQ +A G L M G+EP+
Sbjct: 247 MEVLNTMVKN-GVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPD 296
>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Brachypodium distachyon]
Length = 714
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 163/355 (45%), Gaps = 54/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAA------RLFKKLNVFCCDPNVITFNTLALV--ALNLF 72
PN VT+N +I GL +G + +AA RL KK + F +P + V A L
Sbjct: 264 PNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALL 323
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EM NE G++ P VVT +IDGL K G M +G+ PD++T N + +
Sbjct: 324 LEMENE-GIV--PTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGY 380
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G +++A CL + + + P TYN L+DG+ + C DV
Sbjct: 381 CKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDV 440
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+Y IL+NG C RN+ EMLS+G+ D YNT
Sbjct: 441 CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREE 500
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + + D+ Y IDGL K G + +A ++ + L T CLI C+ GR
Sbjct: 501 MMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGR 560
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +IF ++ + GL+P VVTY I IH +C+ G A G M E G+EPN
Sbjct: 561 LIEAKNIFDGMVAS-GLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPN 614
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 151/361 (41%), Gaps = 62/361 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A V + P+++T+NSLI G C G + +A LF L P V+T+
Sbjct: 349 GNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTY 408
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF-- 102
N L A L EEM E C PDV T T +++G C + F
Sbjct: 409 NILIDGYCRLGDLEGARRLKEEMTEE---DCLPDVCTYTILMNGSCMVRNLAMVRIFFDE 465
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G+ PD N G + A L E M+ R ++ +T TYN L+DG
Sbjct: 466 MLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGL----- 520
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
CK +++DA L +M+++G+R D TY L
Sbjct: 521 ----------------CKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEA 564
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + + P YT +I + G + A F + T N L+
Sbjct: 565 KNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHA 624
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LC++GR + A+ FH +++ GL P+ TY ++I G CKEG A L +M + G+ P
Sbjct: 625 LCRMGRTESAYQHFHEMLER-GLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHP 683
Query: 325 N 325
+
Sbjct: 684 D 684
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 110/238 (46%), Gaps = 33/238 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN--PNTCTYNTLMDGFAWW 160
M+ G+ P + T N + D+ K G+M++A LL+ M R PN TYN +++G A
Sbjct: 220 MLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARK 279
Query: 161 SK-------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ + ++YN LI G VE A +L EM +EGI TYN
Sbjct: 280 GELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYN 339
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL+K G A F + + + T N LI+G CK
Sbjct: 340 TL-----------------IDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCK 382
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G LK A +F L + GL P V+TYNI+I G+C+ G + A L +M E P+
Sbjct: 383 AGNLKQALCLFGDL-KRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPD 439
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 47/242 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + F L +++ + + VT+N LI GLC G + +A L+ K+ + +T
Sbjct: 488 IGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVT 547
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L + A N+F+ MV G+ P VVT T I C+ G
Sbjct: 548 YTCLIHAHCERGRLIEAKNIFDGMVAS-GL--SPSVVTYTIFIHTYCRRGNLYLAYGWFR 604
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+++G+ P+ VT NV+ L + G+ E A M++R + PN TY
Sbjct: 605 KMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTY----------- 653
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+LI+G CK+ N A+ L EM +GI D T+N LF + H
Sbjct: 654 ----------TLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFG----EGH 699
Query: 222 VY 223
+Y
Sbjct: 700 MY 701
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+ + F + H ++ CNC++ L R ++ ++Q G+ P + TYN +
Sbjct: 177 QCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQL-GVEPSIFTYNTL 235
Query: 298 IHGFCKEGQHQKANGLLLDME--ETGLEPN 325
+ FCK G+ +A LL DME G PN
Sbjct: 236 LDSFCKAGRMDQAVALLKDMEARAAGCLPN 265
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+PN+V +N++I G EG + +A LFK++ P+++T+N++ A
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ + P+ T N+I G G M + PDVVTL+++
Sbjct: 289 FLRQMVNKRVL---PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 345
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NP+ +YN +++G+A +KGC
Sbjct: 346 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA--TKGCLVDMTDLFDLMLGDGI 403
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D Y++N+LI Y ++ A+ + EM G++ D TY T+ A+
Sbjct: 404 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 463
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I + +I+ LC
Sbjct: 464 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 523
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL PD V Y++++ G+C G+ +KA + M G+EPN
Sbjct: 524 KLGRVMDAQNIFDLTV-NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 581
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 166/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 404 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 463
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GM D+V + + +
Sbjct: 464 KFNQMIDQ-GV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 520
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P+ Y+ LMDG+ A S G
Sbjct: 521 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 580
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPP---- 218
+V Y L+NGYCK +++ +SL REML GI+ Y+ LF A VP
Sbjct: 581 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKF 640
Query: 219 ----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
D Y + GL+KN EA+ +F + + I T N +IDG+ +
Sbjct: 641 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 700
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ L P+VVTY+IMI KEG ++A + M+ G EPN
Sbjct: 701 RRVEEAKDLFASISRS-RLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 756
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 71/334 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ I+ + ++V F+S+I LC GR+++A
Sbjct: 499 LISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ-------------------------- 532
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
N+F+ VN V PD V + ++DG C G M+ G+ P+VV +
Sbjct: 533 NIFDLTVN---VGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 589
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ K G+++E L M+QR + P+T Y+ ++DG + G
Sbjct: 590 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIA 649
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +YNI++ G K+R ++A+ L +E+ + ++ + T NT+
Sbjct: 650 MDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM---------------- 693
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDG+++ V EA +F++I + V + T + +I L K G ++ A D+F MQN
Sbjct: 694 -IDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSS-MQNA 751
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G P+ N ++ K+ + +A L ++E
Sbjct: 752 GCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDE 785
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + +++ +L GK +A+ LL +M A C +V
Sbjct: 193 PDVFSYSILLKSLCDQGKSGQADDLLRMM-------------------AEGGAVCSPNVV 233
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN +I+G+ K+ +V A L +EM+ GI D TYN++ A+
Sbjct: 234 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 293
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P++ Y I G G EA++VF + H + + T + L+ LCK G++
Sbjct: 294 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 353
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G PDV +YNIM++G+ +G
Sbjct: 354 KEARDVFDT-MAMKGQNPDVFSYNIMLNGYATKG 386
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + ++ +I GL GR + A F ++ ++ T
Sbjct: 595 IGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICT 654
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGFMMDQ 106
+N + L F+E + F + K +++T +IDG+ KD F
Sbjct: 655 YNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 714
Query: 107 GMR--PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
R P+VVT ++M NL K+G +EEA + M PN+ N ++ ++
Sbjct: 715 RSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIV 774
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 775 RAGAYLSKI 783
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L++G C+ R A
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 225
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 160/342 (46%), Gaps = 61/342 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+++LI C GR+ +A F ++ +PN + +++L + A L
Sbjct: 472 PDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKEL 531
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
EM+++ I +P++V ++II LC +G +MD G RP +VT N + D
Sbjct: 532 VSEMMSKG--IPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDG 589
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
GKME+A +L+ M+ + P+ TYNTL ++GYCK
Sbjct: 590 YCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL---------------------VSGYCKS 628
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
++D + L REML + ++ TY+ + M + D Y
Sbjct: 629 GKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTY 688
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL +N EA+ +F +G C I N +I+ L K+ R + A D+F +
Sbjct: 689 KILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAI-S 747
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P+V TY +MIH KEG ++A+ + ME++G P+
Sbjct: 748 TSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPS 789
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 167/376 (44%), Gaps = 55/376 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G R+L + + N+ +K LC R EA L +++ C PN I++
Sbjct: 171 RPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISY 230
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ + AL++ + M E G C PDVV+ +I G K G
Sbjct: 231 NTVIKSLCGDSRSQEALDMVQRMAKEGGR-CSPDVVSFNTVIHGFFKQGEVSKACNLINE 289
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PDVVT N + D L K M++A +L M+ + V P+ TY ++ G++
Sbjct: 290 MVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGH 349
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W SKG + ++N ++ CK +DA + + M ++G D +Y+
Sbjct: 350 WKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSI 409
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L MA + + H + I K G + EAM VF+ +
Sbjct: 410 LLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQG 469
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + LI C++GRL A + F ++ + GL P+ V Y+ +IHGFC G KA
Sbjct: 470 VRPDVVTYSTLISAFCRMGRLADAMEKFSQMI-SIGLEPNTVVYHSLIHGFCMHGDLVKA 528
Query: 311 NGLLLDMEETGL-EPN 325
L+ +M G+ PN
Sbjct: 529 KELVSEMMSKGIPRPN 544
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 171/376 (45%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L+ ++ P++VT+NS++ LC + +A + +++ +P+ +T+
Sbjct: 278 GEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTY 337
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ + +F +M ++ G+I P +VT + + LCK G +
Sbjct: 338 TAIIHGYSCSGHWKESAKMFRKMTSK-GLI--PGIVTFNSFMSSLCKHGRSKDAEEIFQY 394
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G PD+V+ +++ + +G+ + N L M + + N +N L+ A
Sbjct: 395 MTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGM 454
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G R DV +Y+ LI+ +C+ + DA+ +M+S G+ + Y++
Sbjct: 455 MDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHS 514
Query: 209 LF------------------MAINNVP-PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M +P P+ +++ I L G V++A VF+ + +
Sbjct: 515 LIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHI 574
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
TI T N LIDG C +G+++ A+ + M + G+ PDVVTYN ++ G+CK G+
Sbjct: 575 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDA-MVSVGIEPDVVTYNTLVSGYCKSGKIDD 633
Query: 310 ANGLLLDMEETGLEPN 325
L +M ++P
Sbjct: 634 GLILFREMLHKKVKPT 649
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 55/344 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVI 59
MGR + +++ PN V ++SLI G C G +++A L ++ + PN++
Sbjct: 487 MGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIV 546
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
F+++ + A ++F +++ + +P +VT ++IDG C G
Sbjct: 547 FFSSIIHSLCNEGRVMDAHDVFNLVIH---IGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M+ G+ PDVVT N + K GK+++ L M+ + V P T TY+ ++DG
Sbjct: 604 DAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHA 663
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ G D+ +Y IL+ G C++ ++A++L ++ + + D T
Sbjct: 664 GRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITIL 723
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NT+ I+ LYK EA +F+AI V + T +I L
Sbjct: 724 NTV-----------------INALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLL 766
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
K G ++ A +F M+ G P N +I ++G KA
Sbjct: 767 KEGSVEEADTMFSS-MEKSGCAPSSRLLNDIIRMLLQKGDIVKA 809
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 157 FAWWSKGCRHD---------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A +++ CR + V++Y IL++ C+ R + + +L G+R N
Sbjct: 136 LALFNRICREEAGPRVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEAN 195
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
T + + + + G CV + N +I LC
Sbjct: 196 TFLKCLCHAKRTDEAVDVLLHRMSDLG----------------CVPNAISYNTVIKSLCG 239
Query: 268 IGRLKIAWDIFHMLMQNPGL-TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + A D+ + + G +PDVV++N +IHGF K+G+ KA L+ +M + G+EP+
Sbjct: 240 DSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPD 298
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 165/354 (46%), Gaps = 61/354 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL R+ P T+N+L+ G I +A ++ + + + +P++ T+N LA+
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGL 323
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMR 109
A L +EM E PDVVT ++D K D M D+G++
Sbjct: 324 CQAGKVDEAFRLKDEM--ERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
P +VT N++ +L K+GK+EEA LE + + + P+ TYNTL+D
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLID-------------- 427
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------------AINNV 216
YCK NV A +L EM+ +G++ D T NT+ +++
Sbjct: 428 -------AYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480
Query: 217 P-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P PD Y T + +K A++++ + K + +I T N LI GLC++ RL
Sbjct: 481 PQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL 540
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A D + L++ GL PD TYNI+IH +CKEG + A M E +P+
Sbjct: 541 KEAIDKLNELVEK-GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD-PNVITFNTLALV---------A 68
F P++ T+N L GLC G++ EA RL ++ P+V+T+NTL A
Sbjct: 309 FEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDA 368
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVM 118
L L EEM ++ GV KP +VT ++ LCK+G + ++G+ PDV+T N +
Sbjct: 369 LRLLEEMRDK-GV--KPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D K G + +A L++ M+ + + +T T NT++ + +G
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D SY ++ Y K+ N E A+ L +M+ + +TYNTL +
Sbjct: 486 VPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAID 545
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ PD Y I K G + A + + + + + TCN L++GLC
Sbjct: 546 KLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLC 605
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A +F ++ G DV+TYN +I CK G A DME GL+P+
Sbjct: 606 LHGKLDKALKLFESWVEK-GKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPD 663
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 56/359 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + F L+ ++ + T N+++ LC R +A L P+ +++
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSY 492
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF-- 102
T+ AL L+++M+ E +I P + T +I GLC+ D
Sbjct: 493 GTVMAAYFKEYNPEPALRLWDQMI-ERKLI--PSISTYNTLIKGLCRMERLKEAIDKLNE 549
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++++G+ PD T N++ K+G +E A M++ P+ T NTLM+G
Sbjct: 550 LVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGK 609
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+W KG + DV +YN LI CK +V+ A+ +M +G++ DA TYN
Sbjct: 610 LDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNV 669
Query: 209 LFMAINNV--PPDSH--VYTTYIDGLYKNGFVLEAMKVFSA----IGNHKCVLTIETC-- 258
+ A++ ++H ++ G F +K SA + H+ E+
Sbjct: 670 VLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEK 729
Query: 259 ---NCL------IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
N L ++GLC G+LK A + +MQ G+ D TY ++ G K + Q
Sbjct: 730 AQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQK-GMPVDSSTYITLMEGLIKRQKRQ 787
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 40/257 (15%)
Query: 106 QGMRPDVVTLNVMTDNLSKD-GKMEEANC-LLEVMIQRDVNPNTCTYN----------TL 153
+G+RP + N + LS+ + +A+ + +I+ ++PN T+N TL
Sbjct: 165 RGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTL 224
Query: 154 MDGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D A S G D +YN L+N +C+ + +A +L M +GI TYNTL
Sbjct: 225 ADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTL 284
Query: 210 FMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A + PD Y GL + G V EA ++ +
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST 344
Query: 252 VLT-IETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
L + T N L+D K + + D +L M++ G+ P +VT+NI++ CKEG+ +
Sbjct: 345 ALPDVVTYNTLVDACFK---WRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401
Query: 309 KANGLLLDMEETGLEPN 325
+A G L + E GL P+
Sbjct: 402 EALGKLEKIAEEGLAPD 418
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 48/305 (15%)
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG------------MRPD 111
L +A L + GV +P + ++ L + + Q + P+
Sbjct: 150 LPHLAAQLLHSLRRRRGV--RPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPN 207
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS 161
T N++ G + +A L M ++P+ TYNTL++ A +
Sbjct: 208 HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLA 267
Query: 162 KGCRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA----- 212
+ R + +YN L++ + + ++ A + M + G D TYN L +
Sbjct: 268 RMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAG 327
Query: 213 --------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
++ PD Y T +D +K +A+++ + + T+ T
Sbjct: 328 KVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTH 387
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++ LCK G+L+ A + + GL PDV+TYN +I +CK G KA L+ +M
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAEE-GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMV 446
Query: 319 ETGLE 323
GL+
Sbjct: 447 GKGLK 451
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGG-DCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 463 AKELILEMLDRGI 475
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ LI +G++ +A +F K+ +P+ +T+ T+ +
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRP 110
A+ FE+M++E P + ++I LC D + M+D+G+
Sbjct: 421 KSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + D +YN LINGYCK +EDA+ L REM S G+ D TYN + +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN EA+++F + L T
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L ME
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSME 716
Query: 319 ETGLEPN 325
E G N
Sbjct: 717 ENGCTAN 723
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 171/405 (42%), Gaps = 92/405 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLA- 65
++L R+ PN+ ++N L+KGLC E R EA L + + + C P+V+++ T+
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------------- 100
A + EM++ G++ P+VVT ++II LCK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDR-GIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264
Query: 101 -------------------------GF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
GF M G+ PDVVT N + D L K+G+ EA
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGY 178
+ + M +R + P TY TL+ G+A G + Y ++ILI Y
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
K V+ A+ + +M +G+ D TY T+ M + P +
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
VY + I L +A ++ + + L N +ID CK GR+ + +F
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD- 503
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM G+ PD++TY+ +I G+C G+ +A LL M G++P+
Sbjct: 504 LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G R D + + L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TY+++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY L+ GFA KG R D ++ L+ G C D+ DA
Sbjct: 86 EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T + +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+ VT+N+LI G C R+ +A LF+++ P++IT+
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 NTLALVALNLFEEM-----------VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP 110
N ++ LF+ + E G + ++ T I+ GLCK+ + D+ +R
Sbjct: 588 N---IILQGLFQTRRTAAAKELYVGITESGT--QLELSTYNIILHGLCKNN-LTDEALRM 641
Query: 111 -----------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
+ T N+M L K G+ +EA L + + P+ TY+ + +
Sbjct: 642 FQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIE 701
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG + + + S+ R++L G A TY LFM
Sbjct: 702 QGLLEELDDLFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY--LFM 749
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ + + T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 682 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 726
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 161/359 (44%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
+P++VT+N+L+K C +G + EA L ++ P T+NTL A
Sbjct: 241 LSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQAT 300
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR------PDVVTLNVM 118
N+ E M FG +PD+ T + GLC+ G F + M PDVVT N +
Sbjct: 301 NVVEAMT-AFGF--EPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTL 357
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D K + +A LLE M + V + T+N ++ G +G
Sbjct: 358 VDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGL 417
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------------- 211
DV +YN LI+ YCK RNV A L EM+ G++ D T NTL
Sbjct: 418 APDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEE 477
Query: 212 AINNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ + P PD Y T + +K A+ ++ + K +I T N LI GLC
Sbjct: 478 LLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLC 537
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IG+L A D + LM+ GL PD TYNI+IH +CKEG +KA M E +P+
Sbjct: 538 TIGKLTEAIDKLNELMKK-GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPD 595
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 166/376 (44%), Gaps = 90/376 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLALV---------A 68
F P++ T+N L GLC G++ EA +L ++ ++ P+V+T+NTL A
Sbjct: 311 FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDA 370
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
LNL EEM ++ GV K +VT ++ GLC++G M ++G+ PDV+T N +
Sbjct: 371 LNLLEEMRDK-GV--KSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTL 427
Query: 119 TD-----------------------------------NLSKDGKMEEANCLLEVMIQRDV 143
D NL K+ + EEA LL QR
Sbjct: 428 IDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGF 487
Query: 144 NPNTCTYNTLMDGF----------AWWSKGCRH----DVYSYNILINGYCKDRNVEDAVS 189
P+ +Y T+M + W + + +Y+YN LI G C + +A+
Sbjct: 488 VPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAID 547
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
E++ +G+ D TTYN + H Y K G + +A + + + +
Sbjct: 548 KLNELMKKGLVPDDTTYNIII----------HAYC-------KEGDLEKAFQFHNKMLEN 590
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ TCN L++GLC G+L+ A +F + G DV+TYN +I CK+G
Sbjct: 591 YFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEK-GKKVDVITYNTLIQALCKDGDVDT 649
Query: 310 ANGLLLDMEETGLEPN 325
A DME GL+P+
Sbjct: 650 ALHFFADMEARGLQPD 665
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 153/351 (43%), Gaps = 52/351 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R+S LL + ++VT N ++KGLC EG++ EA K + P+VIT+N
Sbjct: 366 RSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYN 425
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
TL CK N+ M+ G++ D TLN + NL
Sbjct: 426 TL--------------IDAYCK-----ARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNL 466
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH----DV 168
K+ + EEA LL QR P+ +Y T+M + W + + +
Sbjct: 467 CKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSI 526
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------------- 213
Y+YN LI G C + +A+ E++ +G+ D TTYN + A
Sbjct: 527 YTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNK 586
Query: 214 ---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
N PD T ++GL +G + +A+K+F + + + T N LI LCK G
Sbjct: 587 MLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGD 646
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ A F M+ GL PD TYN+++ + G+ ++A +L ++E+G
Sbjct: 647 VDTALHFF-ADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 132/321 (41%), Gaps = 56/321 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARL--FKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P++ N+++ L A L F+ L PN TFN L
Sbjct: 171 PSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTH---------- 220
Query: 79 FGVICKPDVVTCTN--IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
C+ + D L M G+ PDVVT N + + G + EA LL
Sbjct: 221 -----------CSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLA 269
Query: 137 VMIQRDVNPNTCTYNTLMDGFAW--WSK------------GCRHDVYSYNILINGYCKDR 182
M + + P TYNTL+ +A W K G D+++YN+L G C+
Sbjct: 270 RMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAG 329
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
V++A L EM I V PD Y T +D +K +A+ +
Sbjct: 330 KVDEAFKLKDEMEHLSI----------------VSPDVVTYNTLVDACFKYQRSSDALNL 373
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + ++ T N ++ GLC+ G+L+ A M+ + GL PDV+TYN +I +C
Sbjct: 374 LEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEE-GLAPDVITYNTLIDAYC 432
Query: 303 KEGQHQKANGLLLDMEETGLE 323
K KA L+ +M +GL+
Sbjct: 433 KARNVAKAFVLMDEMVRSGLK 453
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L ++ P+ T+N +I C EG + +A + K+ P+V+T
Sbjct: 539 IGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVT 598
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM 104
NTL A+ LFE + + DV+T +I LCKDG F
Sbjct: 599 CNTLMNGLCLHGKLEKAIKLFESWAEKGKKV---DVITYNTLIQALCKDGDVDTALHFFA 655
Query: 105 D---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
D +G++PD T NV+ LS+ G+ EEA +L + + +Y +
Sbjct: 656 DMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVK 715
Query: 162 KG--------CRH-------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G C D SYN + C +++A ++ EM+ +G+ D++TY
Sbjct: 716 TGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTY 775
Query: 207 NTL 209
TL
Sbjct: 776 ITL 778
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N L+ C G L A MQ GL+PDVVTYN ++ C++G +A LL
Sbjct: 212 TFNLLVHTHCSKGTLADALSTLST-MQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLAR 270
Query: 317 MEETGLEP 324
M++ G+ P
Sbjct: 271 MKKEGIAP 278
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+PN+V +N++I G EG + +A LFK++ P+++T+N++ A
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ + P+ T N+I G G M + PDVVTL+++
Sbjct: 276 FLRQMVNKRVL---PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NP+ +YN +++G+A +KGC
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA--TKGCLVDMTDLFDLMLGDGI 390
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D Y++N+LI Y ++ A+ + EM G++ D TY T+ A+
Sbjct: 391 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I + +I+ LC
Sbjct: 451 KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 510
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL PD V Y++++ G+C G+ +KA + M G+EPN
Sbjct: 511 KLGRVMDAQNIFDLTV-NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 165/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 391 APDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GM D+V + + +
Sbjct: 451 KFNQMIDQ-GV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 507
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P+ Y+ LMDG+ A S G
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPP---- 218
+V Y L+NGYCK +++ +SL REML GI+ Y+ LF A VP
Sbjct: 568 NVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKF 627
Query: 219 ----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
D Y + GL+KN EA+ +F + + I T N +IDG+ +
Sbjct: 628 HEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 687
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ L P VVTY+IMI KEG ++A + M+ G EPN
Sbjct: 688 RRVEEAKDLFASISRS-RLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 71/334 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ I+ + ++V F+S+I LC GR+++A
Sbjct: 486 LISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ-------------------------- 519
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
N+F+ VN V PD V + ++DG C G M+ G+ P+VV +
Sbjct: 520 NIFDLTVN---VGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 576
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ K G+++E L M+QR + P+T Y+ ++DG + G
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIA 636
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +YNI++ G K+R ++A+ L +E+ + ++ + T NT+
Sbjct: 637 MDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM---------------- 680
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDG+++ V EA +F++I + V ++ T + +I L K G ++ A D+F MQN
Sbjct: 681 -IDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSS-MQNA 738
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G P+ N ++ K+ + +A L ++E
Sbjct: 739 GCEPNSRLLNHVVRELLKKNEIVRAGAYLSKIDE 772
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + +++ +L GK +A+ LL +M A C +V
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMM-------------------AEGGAVCSPNVV 220
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN +I+G+ K+ +V A L +EM+ GI D TYN++ A+
Sbjct: 221 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQM 280
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P++ Y I G G EA++VF + H + + T + L+ LCK G++
Sbjct: 281 VNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G PDV +YNIM++G+ +G
Sbjct: 341 KEARDVFDT-MAMKGQNPDVFSYNIMLNGYATKG 373
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + ++ +I GL GR + A F ++ ++ T
Sbjct: 582 IGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICT 641
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGFMMDQ 106
+N + L F+E + F + K +++T +IDG+ KD F
Sbjct: 642 YNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASIS 701
Query: 107 GMR--PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
R P VVT ++M NL K+G +EEA + M PN+ N ++ ++
Sbjct: 702 RSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIV 761
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 762 RAGAYLSKI 770
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L++G C+ R A
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 212
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGD-CPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 463 AKELILEMLDRGI 475
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ LI +G++ +A +F K+ +P+ +T+ T+ +
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
A+ FE+M++E P + ++I LC K+ M+D+G+
Sbjct: 421 KSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + D +YN LINGYCK +EDA+ L REM S G+ D TYN + +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN EA+++F + L T
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L ME
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSME 716
Query: 319 ETGLEPN 325
E G N
Sbjct: 717 ENGCTAN 723
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 171/405 (42%), Gaps = 92/405 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLA- 65
++L R+ PN+ ++N L+KGLC E R EA L + + + C P+V+++ T+
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------------- 100
A + EM++ G++ P+VVT ++II LCK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDR-GIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264
Query: 101 -------------------------GF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
GF M G+ PDVVT N + D L K+G+ EA
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGY 178
+ + M +R + P TY TL+ G+A G + Y ++ILI Y
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
K V+ A+ + +M +G+ D TY T+ M + P +
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
VY + I L +A ++ + + L N +ID CK GR+ + +F
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD- 503
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM G+ PD++TY+ +I G+C G+ +A LL M G++P+
Sbjct: 504 LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G R D + + L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TY+++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY L+ GFA KG R D ++ L+ G C D+ DA
Sbjct: 86 EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T + +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+ VT+N+LI G C R+ +A LF+++ P++IT+
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + E G + ++ T I+ GLCK+ + D+ +R
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 644
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+ +EA L + + P+ TY+ + +
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG + + + S+ R++L G A TY LFM
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY--LFM 749
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ + + T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 682 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 726
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 171/405 (42%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
GF +LG + P++VTF +++ GLC EG + +A R L + + T +
Sbjct: 80 GFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIIN 139
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------------- 102
+ AL+ ++M + C DV + ++DGLCKDG
Sbjct: 140 GLCKVGHSSAALSYLKKMEEQ---NCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKG 196
Query: 103 ------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
MM +G+ PDV T NV+ K G + A
Sbjct: 197 IQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAK 256
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGY 178
+ M + N TYN+++ + KGC ++ +YN LI+G+
Sbjct: 257 SIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGW 316
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ +N+ A+ EM++ G+ D T++TL M + PD
Sbjct: 317 CETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDL 376
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+DGL+K F EAM +F + L I + +++G+C G+L A ++F
Sbjct: 377 QTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSY 436
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + G+ DVVTYNIMI+G CKEG A LL+ MEE G P+
Sbjct: 437 L-SSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPD 480
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 111/242 (45%), Gaps = 39/242 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ RA F +G + + N+VT+NS+I C ++ +A +F + C PN++T
Sbjct: 252 ISRAKSIFSFMGHMGIE---HNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVT 308
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N+L A+ EMVN G+ PDVVT + +I G CK G
Sbjct: 309 YNSLIHGWCETKNMNKAMYFLGEMVNN-GL--DPDVVTWSTLIGGFCKAGKPVAAKELFF 365
Query: 102 FMMDQGMRPDVVTLNVMTDNLSK----------DGKMEEANCLLEVMIQRDVNPNTCTYN 151
M G PD+ T ++ D L K ++E+ N L+++I + C+
Sbjct: 366 VMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSG 425
Query: 152 TLMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
L D +S KG + DV +YNI+ING CK+ ++DA L +M G D TYN
Sbjct: 426 KLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYN 485
Query: 208 TL 209
Sbjct: 486 VF 487
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VT+NSLI G C + +A ++ DP+V+T++TL + A L
Sbjct: 304 PNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKEL 363
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------QGMRPD--VVTLNVMTDN 121
F M ++ G + PD+ TC I+DGL K F + + M D ++ +++ +
Sbjct: 364 FFVM-HKHGQL--PDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNG 420
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ GK+ +A L + + V + TYN +++G GC D
Sbjct: 421 MCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPD 480
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+YN+ + G + + + M +G RA+ATT L
Sbjct: 481 ECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLL 522
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MA 212
G + +V ++NI+IN C+ + S+ M G+ T+ T+ A
Sbjct: 56 GVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQA 115
Query: 213 INNV--------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
I V D + I+GL K G A+ + C L + + ++DG
Sbjct: 116 IRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDG 175
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G + A D+F M G+ P++ TYN +IHG C + ++A LL +M G+ P
Sbjct: 176 LCKDGMVFEALDLFSQ-MTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMP 234
Query: 325 N 325
+
Sbjct: 235 D 235
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 28/243 (11%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PD VT N++ D L K GK+ EA +++ MI++ V PNT TY++LM+G+
Sbjct: 8 PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
A ++GC DV SYNILING CK + +++A + EM G+ + TYNTL
Sbjct: 68 FNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWK 127
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M PD Y+ ++ GL K G++ +A+++F + N+ + N LI
Sbjct: 128 QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILI 187
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
D +CK G+L+ A ++F + + GL PDV ++ +I G C+EG +A ME G
Sbjct: 188 DAMCKSGKLEDARELF-LKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGC 246
Query: 323 EPN 325
P+
Sbjct: 247 PPD 249
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 60/196 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++VT++ + GL +G + +A LF+++ +P+++ +N L
Sbjct: 142 SPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNIL--------------- 186
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
ID +CK G + D +G+ PDV + + L ++G ++
Sbjct: 187 --------------IDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLD 232
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
EA M +RD GC D SYN+++ G+ ++ A
Sbjct: 233 EAYKAFRQM-ERD--------------------GCPPDCCSYNVIVRGFLQNNGASRAEQ 271
Query: 190 LCREMLSEGIRADATT 205
L +EM G ADA T
Sbjct: 272 LFQEMFDRGFSADALT 287
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V +N LI +C G++ +A LF KL+V P+V ++ ++ L L +E
Sbjct: 178 PDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKA 237
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
F + C PD + I+ G ++ M D+G D +T + D LSK
Sbjct: 238 FRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSK 297
Query: 125 D 125
D
Sbjct: 298 D 298
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD VT+NI++ CK+G+ +A G++ M E G+EPN
Sbjct: 6 IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPN 44
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGG-DCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 463 AKELILEMLDRGI 475
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ LI +G++ +A +F K+ +P+ +T+ T+ +
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRP 110
A+ FE+M++E P + ++I LC D + M+D+G+
Sbjct: 421 KSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + D +YN LINGYCK +EDA+ L REM S G+ D TYN + +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN EA+++F + L T
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L ME
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSME 716
Query: 319 ETGLEPN 325
E G N
Sbjct: 717 ENGCTAN 723
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 171/405 (42%), Gaps = 92/405 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLA- 65
++L R+ PN+ ++N L+KGLC E R EA L + + + C P+V+++ T+
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------------- 100
A + EM++ G++ P+VVT ++II LCK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDR-GIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264
Query: 101 -------------------------GF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
GF M G+ PDVVT N + D L K+G+ EA
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGY 178
+ + M +R + P TY TL+ G+A G + Y ++ILI Y
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
K V+ A+ + +M +G+ D TY T+ M + P +
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
VY + I L +A ++ + + L N +ID CK GR+ + +F
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD- 503
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM G+ PD++TY+ +I G+C G+ +A LL M G++P+
Sbjct: 504 LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY L+ GFA KG R D ++ L+ G C D+ DA
Sbjct: 86 EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T + +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G R D + + L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TY+++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+ VT+N+LI G C R+ +A LF+++ P++IT+
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + E G + ++ T I+ GLCK+ + D+ +R
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 644
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+ +EA L + + P+ TY+ + +
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG + + + S+ R++L G A TY LFM
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY--LFM 749
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ + + T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 682 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 726
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 166/342 (48%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNL 71
P++V+F++LI L G + +A + F+ + P+ + + N + AL +
Sbjct: 235 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 294
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM+ + C DVVT I++GLCK+ M ++G+ PD T + +
Sbjct: 295 RDEMLEQG---CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 351
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRHDVY-- 169
SKDG M +A L E+MIQR++ P+ TYNTL+DGF W+ +Y
Sbjct: 352 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 411
Query: 170 --SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----MAINNVPPDSHVY 223
SY ILINGYC V +A L EM+ +G A T NT+ A N V D +
Sbjct: 412 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 471
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ G+ +G T N LI+G K + A+ + + M+
Sbjct: 472 NMLLKGIVPDGI---------------------TYNTLINGFIKEENMDRAFALVNK-ME 509
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PDV+TYN++++GF ++G+ Q+A ++L M E G+ P+
Sbjct: 510 NSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 551
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L+ + P + T+N++I GLC G+ L A + ++ P+ T+
Sbjct: 146 GLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATY 205
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L + A +F+EM ++ GV+ PD+V+ + +I L K+G
Sbjct: 206 NILLVECCRNDNMMDAERIFDEMPSQ-GVV--PDLVSFSALIGLLSKNGCLDQALKYFRD 262
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M + G+ PD V ++ ++G M EA + + M+++ + TYNT+++G
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 322
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G D Y++ LINGY KD N+ AV+L M+ ++ D TYNT
Sbjct: 323 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 382
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + P+ Y I+G G V EA +++ +
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
TI TCN ++ G C+ G + D F M G+ PD +TYN +I+GF KE +A
Sbjct: 443 FEATIITCNTIVKGYCRAGN-AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRA 501
Query: 311 NGLLLDMEETGLEPN 325
L+ ME +GL P+
Sbjct: 502 FALVNKMENSGLLPD 516
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C +++ GL K G++ + G++ +V TLN+M + L K+ K+E L M
Sbjct: 64 ACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM 123
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ V P+ TYNTL++ + + KG + V++YN +ING CK
Sbjct: 124 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 183
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
A + EML G+ D TYN L M V PD ++
Sbjct: 184 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 243
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L KNG + +A+K F + N LI G C+ G + A + +++ G
Sbjct: 244 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-G 302
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYN +++G CKE +A+ L +M E G+ P+
Sbjct: 303 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 341
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 46/205 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S F L ++ F ++T N+++KG C G ++A + + P+ IT
Sbjct: 425 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 484
Query: 61 FNTLALVALNLF---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+NTL +N F E M F ++ K M + G+ PDV+T NV
Sbjct: 485 YNTL----INGFIKEENMDRAFALVNK------------------MENSGLLPDVITYNV 522
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + S+ G+M+EA ++ MI+R VNP+ TY + LING
Sbjct: 523 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS---------------------LING 561
Query: 178 YCKDRNVEDAVSLCREMLSEGIRAD 202
+ N+++A + EML G D
Sbjct: 562 HVTQNNLKEAFRVHDEMLQRGFVPD 586
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
E + F + + ++I CN L+ GL K+G + +AW+I+ ++++ G+ +V T NIM
Sbjct: 45 EGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS-GVQVNVYTLNIM 103
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+ CK + + L DMEE G+ P+
Sbjct: 104 INALCKNQKIENTKSFLSDMEEKGVFPD 131
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 18/161 (11%)
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C + +++L+ Y + R + + R + S+G+ N+L
Sbjct: 23 CGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSL-------------- 68
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL K G+V A +++ + + + T N +I+ LCK +++ F M+
Sbjct: 69 ---LGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKS-FLSDME 124
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G+ PDVVTYN +I+ +C++G ++A L+ M GL+P
Sbjct: 125 EKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKP 165
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 57/360 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + R + F N+ +++++ GR EA ++F+ + C PN+IT
Sbjct: 212 LGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLIT 271
Query: 61 FNTLALV----------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
+NT+ AL++FEEM E GV +PD +T ++I +C G
Sbjct: 272 YNTIIDACGKGGVDLKKALDIFEEMQKE-GV--EPDRITFNSLI-AVCSRGSLWEDSQRV 327
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
M +G+ D+ T N + D + K G+ME A ++ M ++++PN TY+T++DG+
Sbjct: 328 FAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGK 387
Query: 159 -------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
G R D SYN LI+ Y K +DA++ C++M G++AD T
Sbjct: 388 LGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVT 447
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
YN L ID K G +A +F + V + T + LID
Sbjct: 448 YNAL-----------------IDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAY 490
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A IF + + GL PDVV Y+ +I CK G + A LL +M + G++PN
Sbjct: 491 SKAGMHQDATSIF-VEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 549
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 61/337 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV--- 76
++ T+N+LI +C G++ AA + + + PNV+T++T+ L FEE +
Sbjct: 339 DIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLY 398
Query: 77 ---NEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLS 123
E GV +PD V+ +ID K G D G++ DVVT N + D
Sbjct: 399 HDMKESGV--RPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYG 456
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K GK ++A L + M + PN TY+ L+D ++ + G + DV
Sbjct: 457 KQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVV 516
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
Y+ LI+ CK VEDAV L +EM GI+ + TYN+L ID
Sbjct: 517 LYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSL-----------------IDA 559
Query: 230 LYKNGFV--LEAMK------VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+NG V +EA K VF+ +G+ + +T + G L A +FH
Sbjct: 560 YGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLA-AVSVFHE- 617
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
MQ GL P+VVT++ +++ + Q+A+ LL M
Sbjct: 618 MQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQMR 654
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 133/318 (41%), Gaps = 61/318 (19%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
S P+ V++N+LI GR +A K + +V+T+N L
Sbjct: 404 SGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKD 463
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNV 117
A LF++M E G++ P+V+T + +ID K G D G++PDVV +
Sbjct: 464 AAGLFDKMKAE-GLV--PNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSS 520
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ D+ K G +E+A LL+ M Q + PN TYN+L+D + + + N+ IN
Sbjct: 521 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINV 580
Query: 178 YCK--DRNVE-------------------DAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ K DR+ E AVS+ EM G++ + T++ + A +
Sbjct: 581 FNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRC 640
Query: 217 PP--------------DSHVYTT---YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
DS VY + GL ++ +V EA ++F I N
Sbjct: 641 SSLQEASVLLEQMRFFDSWVYGIAHGLLMGLREHVWV-EAQRLFDEIARMDYATGAAFYN 699
Query: 260 CLIDGLCKIGRLKIAWDI 277
L D L G+ + A ++
Sbjct: 700 ALTDVLWHFGQRQGAQEV 717
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 158/347 (45%), Gaps = 54/347 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ C P+V+T+ +L
Sbjct: 55 ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 114
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ A LF+EM + + D V T +I GL + G M QG
Sbjct: 115 GKKKRSFEAYKLFKEMASRGLAL---DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 171
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------- 156
PDVVTL+ M D L K G++ A + + M R + PN Y+ L+ G
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231
Query: 157 FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
A K C D +YNILI+G CK +V A + EML G + D TYN L
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL------ 285
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I G K G A VF + + +C + T LI GLCK +L A
Sbjct: 286 -----------ISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKA- 333
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+++ M+ G PD Y+ ++ G CK G+ + L +ME +G+
Sbjct: 334 SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 380
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 145/331 (43%), Gaps = 48/331 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVI 82
TF+ LI GL G +++A L ++ C ++ T+ T+ L +E V I
Sbjct: 1 TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60
Query: 83 ----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKM 128
C P + T +++GLCK G + +D G PDVVT + D L K +
Sbjct: 61 TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
EA L + M R + +T Y L+ G S+GC DV + + +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+G CK + AV + + M + G+ P+ VY+ I GL K
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGL-----------------APNEVVYSALIHGLCKAR 223
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A+++ + + C T N LIDGLCK G + A F +++ G PDV TY
Sbjct: 224 KMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE-AGCKPDVYTY 282
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NI+I GFCK G A G+ DM + PN
Sbjct: 283 NILISGFCKAGNTDAACGVFDDMSSSRCSPN 313
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 166/342 (48%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNL 71
P++V+F++LI L G + +A + F+ + P+ + + N + AL +
Sbjct: 392 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 451
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM+ + C DVVT I++GLCK+ M ++G+ PD T + +
Sbjct: 452 RDEMLEQG---CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRHDVY-- 169
SKDG M +A L E+MIQR++ P+ TYNTL+DGF W+ +Y
Sbjct: 509 YSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568
Query: 170 --SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----MAINNVPPDSHVY 223
SY ILINGYC V +A L EM+ +G A T NT+ A N V D +
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ G+ +G T N LI+G K + A+ + + M+
Sbjct: 629 NMLLKGIVPDGI---------------------TYNTLINGFIKEENMDRAFALVNK-ME 666
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PDV+TYN++++GF ++G+ Q+A ++L M E G+ P+
Sbjct: 667 NSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 708
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L+ + P + T+N++I GLC G+ L A + ++ P+ T+
Sbjct: 303 GLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATY 362
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L + A +F+EM ++ GV+ PD+V+ + +I L K+G
Sbjct: 363 NILLVECCRNDNMMDAERIFDEMPSQ-GVV--PDLVSFSALIGLLSKNGCLDQALKYFRD 419
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M + G+ PD V ++ ++G M EA + + M+++ + TYNT+++G
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 479
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G D Y++ LINGY KD N+ AV+L M+ ++ D TYNT
Sbjct: 480 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 539
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + P+ Y I+G G V EA +++ +
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
TI TCN ++ G C+ G + D F M G+ PD +TYN +I+GF KE +A
Sbjct: 600 FEATIITCNTIVKGYCRAGN-AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRA 658
Query: 311 NGLLLDMEETGLEPN 325
L+ ME +GL P+
Sbjct: 659 FALVNKMENSGLLPD 673
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C +++ GL K G++ + G++ +V TLN+M + L K+ K+E L M
Sbjct: 221 ACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM 280
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ V P+ TYNTL++ + + KG + V++YN +ING CK
Sbjct: 281 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 340
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
A + EML G+ D TYN L M V PD ++
Sbjct: 341 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 400
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L KNG + +A+K F + N LI G C+ G + A + +++ G
Sbjct: 401 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-G 459
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYN +++G CKE +A+ L +M E G+ P+
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 498
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 46/205 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S F L ++ F ++T N+++KG C G ++A + + P+ IT
Sbjct: 582 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 641
Query: 61 FNTLALVALNLF---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+NTL +N F E M F ++ K M + G+ PDV+T NV
Sbjct: 642 YNTL----INGFIKEENMDRAFALVNK------------------MENSGLLPDVITYNV 679
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + S+ G+M+EA ++ MI+R VNP+ TY + LING
Sbjct: 680 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS---------------------LING 718
Query: 178 YCKDRNVEDAVSLCREMLSEGIRAD 202
+ N+++A + EML G D
Sbjct: 719 HVTQNNLKEAFRVHDEMLQRGFVPD 743
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+H + S++ +I+ + R + DA ++ M+ + + +L + N + V+
Sbjct: 129 KHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFD 188
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ + + E + F + + ++I CN L+ GL K+G + +AW+I+ ++++
Sbjct: 189 LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 248
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +V T NIMI+ CK + + L DMEE G+ P+
Sbjct: 249 -GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 288
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ +I R V + + +++ C + +++L+ Y + R + + R +
Sbjct: 152 QAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLK 211
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S+G+ N+L + GL K G+V A +++ + + +
Sbjct: 212 SKGLCVSINACNSL-----------------LGGLVKVGWVDLAWEIYQEVVRSGVQVNV 254
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N +I+ LCK +++ F M+ G+ PDVVTYN +I+ +C++G ++A L+
Sbjct: 255 YTLNIMINALCKNQKIENTKS-FLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 313
Query: 316 DMEETGLEP 324
M GL+P
Sbjct: 314 SMSGKGLKP 322
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 171/339 (50%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+N++++ LC G++ EA + + C P+VIT+ L A+
Sbjct: 206 APDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMK 265
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
L +EM + CKPDVVT +I+G+CK+G + + G +P+V+T N++
Sbjct: 266 LLDEMRKKG---CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILR 322
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ G A GC
Sbjct: 323 SMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMP 382
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN L++G+C+++ ++ A+ M+S G D TYNTL A
Sbjct: 383 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA-------------- 428
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L K+G A+++ + + + C + T N +IDGL K+G+ + A ++ M+ G
Sbjct: 429 ---LCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE-MRRKG 484
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD++TY+ ++ G EG+ +A + DME ++P+
Sbjct: 485 LKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPS 523
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 141/314 (44%), Gaps = 54/314 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LI G+C EGR+ EA + + ++ C PNVIT N + + A L
Sbjct: 277 PDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERL 336
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M+ + C P VVT +I+ LC+ M G P+ ++ N +
Sbjct: 337 LADMLRKG---CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHG 393
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFA---------WWSKGCRHD 167
++ KM+ A LE+M+ R P+ TYNTL+ DG A SKGC
Sbjct: 394 FCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPV 453
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I+G K E A L EM +G++ D TY+TL +
Sbjct: 454 LITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTL-----------------L 496
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL G V EA+K+F + + T N ++ GLCK + A D F M G
Sbjct: 497 RGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID-FLAYMVEKGC 555
Query: 288 TPDVVTYNIMIHGF 301
P TY I+I G
Sbjct: 556 KPTKATYTILIEGI 569
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 152/363 (41%), Gaps = 71/363 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L R++ P+++ SLI+G C G+ +A R+ + L P+VIT+
Sbjct: 121 GELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITY 180
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVV 113
N L I G CK G +D+ ++ PDVV
Sbjct: 181 NVL-----------------------------IGGYCKSG-EIDKALQVLERMSVAPDVV 210
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T N + +L GK++EA +L+ +QR+ P+ TY L++
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
KGC+ DV +YN+LING CK+ +++A+ M G + + T+N + ++
Sbjct: 271 RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRW 330
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P + I+ L + + A+ V + H C+ + N L
Sbjct: 331 MDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPL 390
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ G C+ ++ A + +++ G PD+VTYN ++ CK+G+ A +L + G
Sbjct: 391 LHGFCQEKKMDRAIEYLEIMVSR-GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKG 449
Query: 322 LEP 324
P
Sbjct: 450 CSP 452
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+ L ++G++EE LE MI + P+ +L+ GF K
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G DV +YN+LI GYCK ++ A+ + M +V PD
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM--------------------SVAPDVV 210
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T + L +G + EAM+V +C + T LI+ C + A +
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDE- 269
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G PDVVTYN++I+G CKEG+ +A L +M G +PN
Sbjct: 270 MRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPN 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 22/141 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A +L ++ +P ++T+N++I GL G+ AA L +++ P++IT+
Sbjct: 433 GKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITY 492
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+TL A+ +F +M G+ KP VT I+ GLCK +
Sbjct: 493 STLLRGLGCEGKVDEAIKIFHDME---GLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAY 549
Query: 103 MMDQGMRPDVVTLNVMTDNLS 123
M+++G +P T ++ + ++
Sbjct: 550 MVEKGCKPTKATYTILIEGIA 570
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T+++L++GL EG++ EA ++F + P+ +T
Sbjct: 467 VGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVT 526
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGL 97
+N + L A++ MV + CKP T T +I+G+
Sbjct: 527 YNAIMLGLCKAQQTSRAIDFLAYMVEKG---CKPTKATYTILIEGI 569
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 169/375 (45%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F + T +++ C +GR LF++++ PN++ +
Sbjct: 195 GRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNY 254
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ A ++ EEMV G KP+V T T++IDGLCK G+M
Sbjct: 255 SAWIDGLCERGYVKQAFHVLEEMV---GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLK 311
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+P+V T VM K+GK+ A LL M+++ + PNT TY TL+ G
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGG 371
Query: 157 -----FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F +K G ++Y+YN +I G+CK +++A + R S+G+ D TY
Sbjct: 372 SFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYT 431
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L MA + PD H YTT I + + ++ ++F +
Sbjct: 432 ILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSI 491
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V T +T +I G C++G+L A +F ++Q+ G PD +TY +I CKE + ++
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQH-GCLPDSITYGALISSLCKESRLEE 550
Query: 310 ANGLLLDMEETGLEP 324
A L M + L P
Sbjct: 551 ARALFETMLDKHLVP 565
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 142/342 (41%), Gaps = 67/342 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
M RA+GG P+ +F +L+ G C EGR EA L + FC D
Sbjct: 170 MARAAGGV-----------RPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSAT 218
Query: 59 ITFNTLALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MM 104
T A F + + F + + P++V + IDGLC+ G+ M+
Sbjct: 219 CTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMV 278
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G++P+V T + D L K G ME A L+++ PN
Sbjct: 279 GKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPN----------------- 321
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
V++Y ++I GYCK+ + A L M+ +G+ P+++ Y
Sbjct: 322 ----VHTYTVMIGGYCKEGKLARAEMLLGRMVEQGL-----------------APNTNTY 360
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
TT I G K G A ++ + + + I T N +I G CK G+++ A+ + M
Sbjct: 361 TTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATS 420
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL D VTY I+I CK+G A L M E P+
Sbjct: 421 Q-GLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPD 461
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 128 MEEANCLLEVMIQRDVNPNTCTY-NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+E AN +L V ++ +P + DG A + G R D S+ L+ G C++ E+
Sbjct: 143 VETANWVLRVGLR---HPGCFAHAREAFDGMARAAGGVRPDHRSFRALVLGCCREGRFEE 199
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAI------NNV------------PPDSHVYTTYID 228
A +L M ++G D+ T + A NV PP+ Y+ +ID
Sbjct: 200 ADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWID 259
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL + G+V +A V + + T LIDGLCKIG ++ A+ +F L+++
Sbjct: 260 GLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLKLVKSSSYK 319
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+V TY +MI G+CKEG+ +A LL M E GL PN
Sbjct: 320 PNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
T T F+A N+P + + G + EA + + +H L +ET N ++
Sbjct: 92 ATAATAFVARGNLPMAHEAARAMVAAFAEAGRLREAADMLLELRSHGLPLVVETANWVLR 151
Query: 264 -GLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
GL G A + F M G+ PD ++ ++ G C+EG+ ++A+ LL M G
Sbjct: 152 VGLRHPGCFAHAREAFDGMARAAGGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQG 211
Query: 322 L 322
Sbjct: 212 F 212
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---NVFCCDPN 57
+G+ + + R++ P+ +T+ +LI LC E R+ EA LF+ + ++ CD
Sbjct: 510 LGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVT 569
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVT-CTNIIDGLCKDGFMMDQGMRPDVVTLN 116
+T + E+ C+ D +T + +D L K R T +
Sbjct: 570 RVT--------------LAYEY---CRRDKITIAVSFLDRLDK---------RQQAHTAD 603
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+ LS G ++ A+ L+ ++ + + TY + ++
Sbjct: 604 ALVRKLSTVGNLDAASLFLKNVLDKHYAVDHATYTSFINS 643
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 152/323 (47%), Gaps = 57/323 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
PN+ T+N LI+ LC G EA + + + C PNV+T+NTL E
Sbjct: 147 APNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE------ 200
Query: 80 GVICKPDVVTCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+DG + G M+D G++P++VT N M + + K GKME+A + + M
Sbjct: 201 --------------VDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEM 246
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRH----------------DVYSYNILINGYCKDR 182
++ + P+ +YNTL+ G + GC H DV ++ LI+ CK
Sbjct: 247 MREGLAPDGVSYNTLVGG--YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAG 304
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
N+E AV+L R+M G++ + T +T IDG K GF+ +A+
Sbjct: 305 NLEWAVTLVRQMRERGLQMNEVT-----------------FTALIDGFCKKGFLDDALLA 347
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + ++ N LI+G C +GR+ A ++ H M+ GL PDVVTY+ +I +C
Sbjct: 348 VRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHE-MEAKGLKPDVVTYSTIISAYC 406
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K A L M E G+ P+
Sbjct: 407 KNCDTHSAFELNQQMLEKGVLPD 429
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 172/353 (48%), Gaps = 62/353 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L+G +L PN+VTFNS++ G+C G++ +A ++F ++ P+ +++
Sbjct: 199 GEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSY 258
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL + AL++F EM + G++ PDVVT T++I +CK G
Sbjct: 259 NTLVGGYCKAGCSHEALSVFAEMTQK-GIM--PDVVTFTSLIHVMCKAGNLEWAVTLVRQ 315
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M ++G++ + VT + D K G +++A + M Q + P+ YN L++G+
Sbjct: 316 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGR 375
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + DV +Y+ +I+ YCK+ + A L ++ML +G+ DA TY++
Sbjct: 376 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 435
Query: 209 LFMAI--NNVPPDSHV-YTTYID-GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
L + D+HV + I GL + F T LIDG
Sbjct: 436 LIRVLCEEKRLSDAHVLFKNMIKLGLQPDEF---------------------TYTSLIDG 474
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
CK G ++ A + H M G+ PDVVTY+++I+G K + +A LL +
Sbjct: 475 HCKEGNVERALSL-HDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 142/350 (40%), Gaps = 98/350 (28%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++V +N+LI G C GR+ EA L ++ P+V+T++T+ A L
Sbjct: 358 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 417
Query: 72 FEEMVNE------------FGVIC--------------------KPDVVTCTNIIDGLCK 99
++M+ + V+C +PD T T++IDG CK
Sbjct: 418 NQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 477
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
+G M+ G+ PDVVT +V+ + LSK + EA LL + + P
Sbjct: 478 EGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTK 537
Query: 150 YNTLM---------------DGF--------------AWWSKGCRHDVYSYNILINGYCK 180
Y+ LM GF + + D Y++LI+G+C+
Sbjct: 538 YDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCR 597
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
NV A+S ++ML G ++T+ +L I GL++NG V+EA
Sbjct: 598 AGNVMKALSFHKQMLQRGFAPNSTSTISL-----------------IRGLFENGMVVEAD 640
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+V + N + E LID G + D+ H + ++ GL P
Sbjct: 641 QVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKD-GLLPS 689
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 169/360 (46%), Gaps = 64/360 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+A V + R PN V++ ++++GLC R EA L + + +V+T+
Sbjct: 103 QARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYG 162
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
TL AL L +EM G +P+VV + ++ G C+ G D
Sbjct: 163 TLIRGLCDASELDAALELLDEMC---GSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDM 219
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G++PDV+ + D+L K+GK +A + ++M+QR + PN
Sbjct: 220 SRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPN----------------- 262
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------- 215
V +YN+LIN CK+ +V +A++L +EM +G+ D TYNTL ++
Sbjct: 263 ----VVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAM 318
Query: 216 ------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
V PD + + I GL K G + +A+KV + C+ + T N LI
Sbjct: 319 SFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIG 378
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G ++ ++K+A ++ L + GL PD TY+I+I+GF K + +A L M + G++
Sbjct: 379 GFLRVHKVKMAMNLMDELAIS-GLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIK 437
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 172/377 (45%), Gaps = 60/377 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL + S ++VT+ +LI+GLC + A L ++ PNV+ ++
Sbjct: 138 RTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYS 197
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
L +FE+M + G+ KPDV+ T +ID LCK+G M
Sbjct: 198 CLLRGYCRSGRWQDVGKVFEDM-SRRGI--KPDVIMFTGLIDDLCKEGKTGKAAKVKDMM 254
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+ +G+ P+VVT NV+ ++L K+G + EA L + M + V P+ TYNTL+ G +
Sbjct: 255 VQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEM 314
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTY 206
DV ++N +I+G CK + AV + REM++E G + TY
Sbjct: 315 DEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV-REMMAERGCMCNLVTY 373
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N L +AI+ + PDS Y+ I+G K V A K +
Sbjct: 374 NYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQ 433
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ L+ +C+ G ++ A +F+ + +N GL D + Y+ MIHG CK G +
Sbjct: 434 RGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGL--DAIAYSTMIHGACKSGDMK 491
Query: 309 KANGLLLDMEETGLEPN 325
L+ DM + GL P+
Sbjct: 492 TVKQLIQDMLDEGLAPD 508
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 171/368 (46%), Gaps = 56/368 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL + S PN+V ++ L++G C GR + ++F+ ++ P+VI F L
Sbjct: 180 LLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLC 239
Query: 65 ---ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
++M+ + G+ +P+VVT +I+ LCK+G M D+G+ PD
Sbjct: 240 KEGKTGKAAKVKDMMVQRGL--EPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF------------ 157
VVT N + LS +M+EA LE MIQ D V P+ T+N+++ G
Sbjct: 298 VVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV 357
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+GC ++ +YN LI G+ + V+ A++L E+ G+ D+ TY+ L
Sbjct: 358 REMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSK 417
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + + Y + + + G + AM +F+ + + C L
Sbjct: 418 MWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIA 476
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ +I G CK G +K + ++ + GL PD VTY+++I+ + K G ++A +L M
Sbjct: 477 YSTMIHGACKSGDMKTVKQLIQDML-DEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQM 535
Query: 318 EETGLEPN 325
+G P+
Sbjct: 536 TASGFVPD 543
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 154/352 (43%), Gaps = 60/352 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++ F LI LC EG+ +AA++ + +PNV+T+N L AL L
Sbjct: 226 PDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTL 285
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-MDQGM-------------RPDVVTLNV 117
+EM ++ GV PDVVT +I GL G + MD+ M PDVVT N
Sbjct: 286 RKEM-DDKGV--APDVVTYNTLIAGL--SGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNS 340
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ L K G+M +A + E+M +R N TYN L+ GF K G
Sbjct: 341 VIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISG 400
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
D ++Y+ILING+ K V+ A M GI+A+ Y L A+
Sbjct: 401 LEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAM 460
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N D+ Y+T I G K+G + ++ + + T + LI+
Sbjct: 461 GLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYA 520
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
K+G L+ A + M G PDV ++ +I G+ EGQ K L+ +M
Sbjct: 521 KLGDLEEAERVLKQ-MTASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMR 571
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
N +L + +R + + L+D R + SY ++ G C R +AV+L
Sbjct: 87 NTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALL 146
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
R M + G+RAD TY TL + + V P+ VY+ + G ++
Sbjct: 147 RSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRS 206
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + KVF + + LID LCK G+ A + M++Q GL P+VVT
Sbjct: 207 GRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQR-GLEPNVVT 265
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN++I+ CKEG ++A L +M++ G+ P+
Sbjct: 266 YNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 59/363 (16%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--------- 66
++C N+ T+NSL+ LC EG++ EA L++K+ P +++N++ L
Sbjct: 446 VACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLD 505
Query: 67 VALNLFEEMVNEFGVIC--KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
+A ++F +M++ C KP+V+T + ++DG K+G M+D+ + P T
Sbjct: 506 MAASVFSDMLD-----CGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFT 560
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWW--- 160
N+ + L K G+ EA +L+ +++ P TYN++MDGF A+
Sbjct: 561 YNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMC 620
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP 217
G +V +Y LING+CK+ N + A+ + EM ++G+ D Y L F ++
Sbjct: 621 ESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIE 680
Query: 218 PDSHVYTTYID-GLYKNGFVLEAM-KVFSAIGNHKCVLT-------------IETCNCLI 262
S +++ +D GL N + ++ + + N + L ++T LI
Sbjct: 681 TASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLI 740
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DGL K GRL +A D++ M G+ PD++ Y ++I+G C +GQ + A +L +ME +
Sbjct: 741 DGLLKEGRLVLALDLYSE-MSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSI 799
Query: 323 EPN 325
PN
Sbjct: 800 TPN 802
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 173/375 (46%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L ++L P V++NS+I G C +G + AA +F + PNVIT+
Sbjct: 467 GKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITY 526
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ L A +F+ MV+E V P T I+GLCK G
Sbjct: 527 SILMDGYFKNGDTEYAFYVFDRMVDENIV---PSDFTYNIKINGLCKVGRTSEAQDMLKK 583
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+++G P +T N + D K+G + A M + V+PN TY TL++GF
Sbjct: 584 FVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNN 643
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG D+ +Y LI+G+CK +++E A L E+L G+ ++ YN+
Sbjct: 644 TDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNS 703
Query: 209 L---FMAINNVPP---------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + +NN+ D YTT IDGL K G ++ A+ ++S +
Sbjct: 704 LISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKG 763
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ I LI+GLC G+L+ A I M+ +TP+V YN +I G K G Q+A
Sbjct: 764 IIPDIIIYTVLINGLCGKGQLENAQKILAE-MERDSITPNVPIYNALIAGHFKAGNLQEA 822
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL PN
Sbjct: 823 FRLHNEMLDKGLTPN 837
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 60/322 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+V +L+KG C + +++ A F K+N PN +T+ L A +L+
Sbjct: 348 NVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLY 407
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK------DGFMMDQGMRPDVV---TLNVMTDNLS 123
+M N+ IC P V ++I G K + D+ + D+ T N + L
Sbjct: 408 TQMKNK--NIC-PTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLC 464
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
K+GKM EA L + M+ + + P +YN+ +I G+C+ N
Sbjct: 465 KEGKMSEATTLWQKMLDKGLAPTKVSYNS---------------------MILGHCRQGN 503
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++ A S+ +ML G++ + TY+ L +DG +KNG A VF
Sbjct: 504 LDMAASVFSDMLDCGLKPNVITYSIL-----------------MDGYFKNGDTEYAFYVF 546
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + V + T N I+GLCK+GR A D+ ++ G P +TYN ++ GF K
Sbjct: 547 DRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEK-GFVPVCLTYNSIMDGFIK 605
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
EG A +M E+G+ PN
Sbjct: 606 EGSVSSALTAYREMCESGVSPN 627
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 138/345 (40%), Gaps = 53/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL-NL 71
R++ S P + N L+ L I EA +++K+ + + T + + L +
Sbjct: 199 RLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDN 258
Query: 72 FEEMVNEFGVICKP-----DVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
EE +F + K D + +I CK+ M D+G P T
Sbjct: 259 NEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFT 318
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------- 162
+ K G M EA L + M+ V N TL+ G+ K
Sbjct: 319 SVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNEN 378
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + +Y +LI CK+ N+ A L +M ++ N+ P +
Sbjct: 379 GPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNK-----------------NICPTVFI 421
Query: 223 YTTYIDGLYKNGFVLEAMKVF-SAIGNHKC-VLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ I G K EA K+F A+ C + I T N L+ LCK G++ A ++
Sbjct: 422 VNSLIRGFLKVESREEASKLFDEAVA---CDIANIFTYNSLLSWLCKEGKMSEATTLWQK 478
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + GL P V+YN MI G C++G A + DM + GL+PN
Sbjct: 479 ML-DKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPN 522
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++ + +LI G C + I A+ LF +L PN + +N+L ALNL
Sbjct: 662 DIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQ 721
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+ M+ E G+ C D+ T T +IDGL K+G M +G+ PD++ V+ + L
Sbjct: 722 KRMLGE-GISC--DLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGL 778
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
G++E A +L M + + PN YN L+ G KG +
Sbjct: 779 CGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPND 838
Query: 169 YSYNILINGYCKDRN 183
+Y+ILING K N
Sbjct: 839 TTYDILINGKIKGGN 853
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVE 185
+++A LL I D P N L+D F +K D+ YN L+N Y K +
Sbjct: 135 LKQAQNLLNRFISGDSGPMP---NILVDHFIGSTKRFDFDSDIRIYNYLLNSYIKANKLN 191
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
DA+ ++ I N L A L KN + EA +V+
Sbjct: 192 DAIGCFNRLVESDIVPWIKFLNFLLTA-----------------LVKNDMIYEAREVY-- 232
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLK----IAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
K VL +C + LK F + ++ G+ D Y+I+I F
Sbjct: 233 ---EKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAF 289
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK + A GLL DM + G P+
Sbjct: 290 CKNLDVELACGLLKDMRDKGWVPS 313
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 164/356 (46%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N++++GLC EG+I EA RL K+ F P+V+T+NTL + A L
Sbjct: 314 PDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKL 373
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EEM GV K + VT +I C +G M++ G PD T N M +
Sbjct: 374 VEEMKAR-GV--KENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMING 430
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----D 167
K GKM EA +++ M ++ + +T T NTL+ D + K + D
Sbjct: 431 YCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILD 490
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+Y LI GY KD + A+ L EM GI A TYNT+ +
Sbjct: 491 EVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLN 550
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ PD I G G V +A + + + H I TCN L+ GLC+ G
Sbjct: 551 ELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREG 610
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ +F+ + + G D VTYNI+I FCKE + + A L+ +ME LEP+
Sbjct: 611 MLEKGLTLFNTWI-SKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPD 665
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 167/389 (42%), Gaps = 86/389 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+ TFN LI G C++ EA RL ++ + C P+ +T+NT+ L AL ++
Sbjct: 209 PNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTV-LTALCKRSQLTQVRD 267
Query: 81 VICK-------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++ + P+ T ++ G CK + M +GM PDV T N M L
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC 327
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------------------- 156
+GK++EA L + M + P+ TYNTL+DG
Sbjct: 328 DEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGV 387
Query: 157 -----FAWW-----------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
W+ G D ++YN +INGYCK + +A + EM
Sbjct: 388 THNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447
Query: 195 LSEGIRADATTYNTLF--MAINNVPPDSH----------------VYTTYIDGLYKNGFV 236
+G++ D T NTL M + D++ Y T I G +K+
Sbjct: 448 GRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQA 507
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A+K++ + V TI T N +I GLC G+ A D + L++ GL PD T NI
Sbjct: 508 DRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEK-GLVPDESTSNI 566
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IHG+C EG +KA M E L+P+
Sbjct: 567 IIHGYCWEGAVEKAFQFHNKMVEHSLKPD 595
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 157/383 (40%), Gaps = 104/383 (27%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-------KLNVF---------CCDP 56
+++ S F+P+ T+N++I G C G++ EA ++ KL+ F C +
Sbjct: 411 KMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEK 470
Query: 57 NV-------------------ITFNTL---------ALVALNLFEEMVNEFGVICKPDVV 88
+ +T+ TL A AL L+EEM E G++ ++
Sbjct: 471 QLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEM-KETGIVA--TII 527
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T II GLC G ++++G+ PD T N++ +G +E+A M
Sbjct: 528 TYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKM 587
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ + P+ T N L+ G W SKG D +YNI+I+ +CK+R +
Sbjct: 588 VEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRL 647
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV-- 242
EDA L EM EG N+ PD + Y + GL K G EA K+
Sbjct: 648 EDAFDLMTEM--EG---------------KNLEPDRYTYNAIVTGLTKAGRTEEAEKLAL 690
Query: 243 -FSAIGNHKCVLTIETCNCL----------IDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
F+ G V T +T L I LC G+ K A +F Q G++ +
Sbjct: 691 KFAEKGQQ--VKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQK-GVSLNK 747
Query: 292 VTYNIMIHGFCKEGQHQKANGLL 314
TY ++ G K + LL
Sbjct: 748 YTYIKLMDGLLKRRKSFTTTSLL 770
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 135/313 (43%), Gaps = 51/313 (16%)
Query: 44 RLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI-------CKPDVVTCTNII 94
++F K+ PN++T NTL ALV N +V V +P+V T +I
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILI 218
Query: 95 DGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
G C D M + G PD VT N + L K ++ + LL M +
Sbjct: 219 HGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLF 278
Query: 145 PNTCTYNTLMDGF---AWWS-----------KGCRHDVYSYNILINGYCKDRNVEDAVSL 190
PN TYN L+ G+ W KG DV++YN ++ G C + +++AV L
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRL 338
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+M S + D TYNTL IDG +++ A K+ +
Sbjct: 339 RDKMESFKLVPDVVTYNTL-----------------IDGCFEHRGSDAAFKLVEEMKARG 381
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T N +I C G++ A ++ + M G +PD TYN MI+G+CK G+ +A
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNVM-VKMVESGFSPDCFTYNTMINGYCKAGKMAEA 440
Query: 311 NGLLLDMEETGLE 323
++ +M GL+
Sbjct: 441 YKMMDEMGRKGLK 453
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + +V ++NILI+GYC D N E+A+ L +M G D TYNT+ A
Sbjct: 206 GVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTA---------- 255
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
L K + + + + N T N L+ G CK+ LK A ++ LM
Sbjct: 256 -------LCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIE-LM 307
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TYN M+ G C EG+ +A L ME L P+
Sbjct: 308 TGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPD 350
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 106/277 (38%), Gaps = 68/277 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +L P+ T N +I G C EG + +A + K
Sbjct: 540 GKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNK------------- 586
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----------RP- 110
+V +L KPD+ TC ++ GLC++G M+++G+ +P
Sbjct: 587 ----MVEHSL------------KPDIFTCNILLRGLCREG-MLEKGLTLFNTWISKGKPM 629
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D VT N++ + K+ ++E+A L+ M +++ P D Y+
Sbjct: 630 DTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEP---------------------DRYT 668
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN ++ G K E+A L + +G + + + +Y+ I L
Sbjct: 669 YNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSP------ELGTSDMMYSEQISSL 722
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
G +AMK+F L T L+DGL K
Sbjct: 723 CTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLK 759
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 167/341 (48%), Gaps = 50/341 (14%)
Query: 17 SCFTPNMVTFNSLIKGLC-TEGRI-LEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF 72
S F P ++++NS++ + + G + L A +++++ PNV T+N L ++
Sbjct: 171 SGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGEL 230
Query: 73 EEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
++ + FG + C P+VVT +ID CK G M +GM+P++++ NV+
Sbjct: 231 QKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVI 290
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ L ++G M+EA +LE M + P+ TYNTL++G+ G
Sbjct: 291 INGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV 350
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
V +Y LIN CK RN+ A+ +M G+R P+ YT
Sbjct: 351 SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR-----------------PNERTYT 393
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T IDG + G + EA ++ + + ++ T N I G C + R++ A + +++
Sbjct: 394 TLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK 453
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PDVV+Y+ +I GFC++G+ +A + +M E G+ P+
Sbjct: 454 -GLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPD 493
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 171/390 (43%), Gaps = 70/390 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR F LL + PN++++N +I GLC EG + EA + +++ P+ +T
Sbjct: 262 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF- 102
+NTL AL + EMV GV P VVT T +I+ +CK + F
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRN-GV--SPSVVTYTALINSMCKARNLNRAMEFFD 378
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+RP+ T + D S+ G + EA +L M + +P+ TYN + G
Sbjct: 379 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 438
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG DV SY+ +I+G+C+ ++ A + +EM+ +G+ DA TY+
Sbjct: 439 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 498
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L + +PPD YTT I+ G + +A+ + + +
Sbjct: 499 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 558
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH---------- 299
+ T + LI+GL K R + A + L+ + P VTY+ +I
Sbjct: 559 GFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV-PSDVTYDTLIENCSNIEFKSV 617
Query: 300 -----GFCKEGQHQKANGLLLDMEETGLEP 324
GFC +G +A+ + M E +P
Sbjct: 618 VALIKGFCMKGLMHEADRVFESMVERNHKP 647
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+VT+N+LI C GRI EA L K ++ PN+I++N + ++ E+
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 306
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ E G PD VT +++G CK+G M+ G+ P VVT + +++ K
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYS 170
+ A + M R + PN TY TL+DGF+ G V +
Sbjct: 367 ARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVT 426
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN I+G+C +E+A+ + +EM+ +G+ D +Y+T+ I G
Sbjct: 427 YNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI-----------------ISGF 469
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G + A ++ + T + LI GLC++ RL A D+ ++ + GL PD
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML-DMGLPPD 528
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I+ +C EG KA L +M G P+
Sbjct: 529 EFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 563
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 90/292 (30%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
+ +L + S F+P++VT+N+ I G C R+ EA + +++ P+V++++T+
Sbjct: 408 AYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIIS 467
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------------ 99
A + +EMV E GV PD VT +++I GLC+
Sbjct: 468 GFCRKGELDRAFQMKQEMV-EKGV--SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524
Query: 100 ---DGF------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
D F M+ +G PD VT +V+ + L+K + EA
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAK 584
Query: 133 CLLEVMIQRDVNPNTCTYNTLMD---------------GFAWWSKGCRHDV--------- 168
LL +I + P+ TY+TL++ GF KG H+
Sbjct: 585 RLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCM--KGLMHEADRVFESMVE 642
Query: 169 -------YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
YN++I+G+C+ N+ A +L +EM+ G T TL A+
Sbjct: 643 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 694
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 174/373 (46%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F ++KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDDNRSQEALELLQMMPDDGGD-CPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 463 AKELILEMLDRGI 475
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ LI +G++ +A +F K+ +P+ +T+ T+ +
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
A+ FE+M++E P + ++I LC K+ M+D+G+
Sbjct: 421 KSGRVEDAMRYFEQMIDER---LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + D +YN LINGYCK +EDA+ L REM S G+ D TYN + +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN EA+++F + L T
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L K+GR A D+F L N GL PDV TY++M ++G ++ + L L ME
Sbjct: 658 NIMIGALLKVGRNDEAKDLFAALSAN-GLVPDVRTYSLMAENLIEQGLLEELDDLFLSME 716
Query: 319 ETGLEPN 325
E G N
Sbjct: 717 ENGCTAN 723
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 171/405 (42%), Gaps = 92/405 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLA- 65
++L R+ PN+ ++N L+KGLC + R EA L + + + C P+V+++ T+
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------------- 100
A + EM++ G++ P+VVT ++II LCK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDR-GIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNG 264
Query: 101 -------------------------GF---MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
GF M G+ PDVVT N + D L K+G+ EA
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEAR 324
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGY 178
+ + M +R + P TY TL+ G+A G + Y ++ILI Y
Sbjct: 325 KMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAY 384
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
K V+ A+ + +M +G+ D TY T+ M + P +
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
VY + I L +A ++ + + L N +ID CK GR+ + +F
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD- 503
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM G+ PD++TY+ +I G+C G+ +A LL M G++P+
Sbjct: 504 LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY LM GFA KG D ++ ++ G C D+ DA
Sbjct: 86 EVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T + +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G D + M L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TY+++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+ VT+N+LI G C R+ +A LF+++ P++IT+
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITY 587
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + E G + ++ T I+ GLCK+ + D+ +R
Sbjct: 588 NIILQGLFQTRRTAAAKELYVGITESGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 644
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+ +EA L + + P+ TY+ + +
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGL 704
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG + + + S+ R++L G A TY LFM
Sbjct: 705 LEELDDLFLSMEENGCTANSRMLN--SIVRKLLQRGDITRAGTY--LFM 749
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ + + T
Sbjct: 562 ISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELST 621
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCT---NIIDGL---------CKDGF--MM 104
+N + L NL +E + F +C D+ T NI+ G KD F +
Sbjct: 622 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALS 681
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
G+ PDV T ++M +NL +E+ + + N CT N+ M
Sbjct: 682 ANGLVPDVRTYSLMAENL-----IEQGLLEELDDLFLSMEENGCTANSRM 726
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 164/354 (46%), Gaps = 61/354 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL R+ P T+N+L+ G I +A ++ + + + +P++ T+N LA+
Sbjct: 264 ALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGL 323
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMR 109
A L +EM G PDVVT ++D K D M D+G++
Sbjct: 324 CQAGKVDEAFRLKDEM-ERLGTAL-PDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
P +VT N++ +L K+GK+EEA LE + + + P+ TYNTL+D
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLID-------------- 427
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------------AINNV 216
YCK NV A +L EM+ +G++ D T NT+ +++
Sbjct: 428 -------AYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480
Query: 217 P-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P PD Y T + +K A++++ + K + +I T N LI GLC++ RL
Sbjct: 481 PQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL 540
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A D + ++ GL PD TYNI+IH +CKEG + A M E +P+
Sbjct: 541 KEAIDKLNEFVEK-GLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLALV---------A 68
F P++ T+N L GLC G++ EA RL ++ P+V+T+NTL A
Sbjct: 309 FEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDA 368
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVM 118
L L EEM ++ GV KP +VT ++ LCK+G + ++G+ PDV+T N +
Sbjct: 369 LRLLEEMRDK-GV--KPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTL 425
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D K G + +A L++ M+ + + +T T NT++ + +G
Sbjct: 426 IDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGF 485
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D SY ++ Y K+ N E A+ L +M+ + +TYNTL +
Sbjct: 486 VPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAID 545
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ PD Y I K G + A + + + + + TCN L++GLC
Sbjct: 546 KLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLC 605
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A +F ++ G DV+TYN +I CK G A DME GL+P+
Sbjct: 606 LHGKLDKALKLFESWVEK-GKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPD 663
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/359 (24%), Positives = 151/359 (42%), Gaps = 56/359 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + F L+ ++ + T N+++ LC R +A L P+ +++
Sbjct: 433 GNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSY 492
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF-- 102
T+ AL L+++M+ + P + T +I GLC+ D
Sbjct: 493 GTVMAAYFKEYNPEPALRLWDQMIERKLI---PSISTYNTLIKGLCRMERLKEAIDKLNE 549
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+++G+ PD T N++ K+G +E A M++ P+ T NTLM+G
Sbjct: 550 FVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGK 609
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+W KG + DV +YN LI CK +V+ A+ +M +G++ DA TYN
Sbjct: 610 LDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNV 669
Query: 209 LFMAINNV--PPDSH--VYTTYIDGLYKNGFVLEAMKVFSA----IGNHKCVLTIETC-- 258
+ A++ ++H ++ G F +K SA + H+ E+
Sbjct: 670 VLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEK 729
Query: 259 ---NCL------IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
N L ++GLC G+LK A + +MQ G+ D TY ++ G K + Q
Sbjct: 730 AQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQK-GMPVDCSTYITLMEGLIKRQKRQ 787
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 48/305 (15%)
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG------------MRPD 111
L +A L + GV +P + ++ L + + Q + P+
Sbjct: 150 LPHLAAQLLHSLRRRRGV--RPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPN 207
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS 161
T N++ G + +A L M ++P+ TYNTL++ A +
Sbjct: 208 HYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLA 267
Query: 162 KGCRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA----- 212
+ R + +YN L++ + + ++ A + M + G D TYN L M
Sbjct: 268 RMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAG 327
Query: 213 --------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ PD Y T +D +K +A+++ + + T+ T
Sbjct: 328 KVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTH 387
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++ LCK G+L+ A + + GL PDV+TYN +I +CK G KA L+ +M
Sbjct: 388 NIVVKSLCKEGKLEEALGKLEKIAEE-GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMV 446
Query: 319 ETGLE 323
GL+
Sbjct: 447 GKGLK 451
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 40/257 (15%)
Query: 106 QGMRPDVVTLNVMTDNLSKD-GKMEEANC-LLEVMIQRDVNPNTCTYN----------TL 153
+G+RP + N + LS+ + +A+ + +I+ ++PN T+N TL
Sbjct: 165 RGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTL 224
Query: 154 MDGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D A S G D +YN L+N +C+ + +A +L M +GI TYNTL
Sbjct: 225 ADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTL 284
Query: 210 FMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A + PD Y GL + G V EA ++ +
Sbjct: 285 VSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGT 344
Query: 252 VLT-IETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
L + T N L+D K + + D +L M++ G+ P +VT+NI++ CKEG+ +
Sbjct: 345 ALPDVVTYNTLVDACFK---WRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLE 401
Query: 309 KANGLLLDMEETGLEPN 325
+A G L + E GL P+
Sbjct: 402 EALGKLEKIAEEGLAPD 418
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 161/341 (47%), Gaps = 57/341 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN VTFN+L+ G +GR + RL + + PNV+++N L L L + E
Sbjct: 8 PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHE---- 63
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--PDVVTLNVMTDNLSKDGKMEEANCLLE 136
+ L +D M+ +G R PD+VT + + K GK+EE+ LL+
Sbjct: 64 ---------------AEELVRD--MISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLK 106
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDR 182
+I R + P+ Y +M ++ GC + ++N LI+G C+++
Sbjct: 107 EVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
N+E A SL + M + G++AD TYNTL M + PD Y+
Sbjct: 167 NLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS 226
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+++ GL K+G VL A +V + + + T N ++DGLCK G++ A ++ + +
Sbjct: 227 SFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS 286
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +VV Y+ ++ G CK G+ Q+A ++ M G P+
Sbjct: 287 DGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD 327
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 150/321 (46%), Gaps = 44/321 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P ++TFN+LI G C E + A L + + +V+T+NTL L E++
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ C PDVV ++ + GLCK G M D P+VVT N + D L K
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269
Query: 125 DGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK++ A ++E M D N Y+T++DG A GCR DV
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y+ L+NG CK +E+AV REM EG + +A TY +L + +
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSC-----------GR 378
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + ++E M G+H C ++ T N LI GLCK GR+ A F M++ G P
Sbjct: 379 LAEAERMVEEMSSGGGGGDH-CPPSVSTYNALIGGLCKAGRIDDALKFFQR-MRSQGCDP 436
Query: 290 DVVTYNIMIHGFCKEGQHQKA 310
D V+Y+ ++ G + G+ +A
Sbjct: 437 DGVSYSTIVEGLARSGRALQA 457
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 124/276 (44%), Gaps = 57/276 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL R+ S P++V ++S + GLC G++L A ++ +++ DPNV+T+
Sbjct: 201 GRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTY 260
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NT+ AL + E+M + G C +VV + ++DGLCK G
Sbjct: 261 NTILDGLCKSGKIDTALEMMEQMASSDG--CGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G RPDVVT + + + L K GK+EEA + M PN TY +L+ G +
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378
Query: 163 -------------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
C V +YN LI G CK ++DA+ + M S+G
Sbjct: 379 LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG----- 433
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
PD Y+T ++GL ++G L+A
Sbjct: 434 ------------CDPDGVSYSTIVEGLARSGRALQA 457
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 36/257 (14%)
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAW 159
MD+ G P+ VT N + + SK G+ + LLE M R + PN +YN L++G
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60
Query: 160 W-----------SKGCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W S+G R D+ +Y+ L++GYCK VE++ L +E++S G+R DA Y
Sbjct: 61 WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120
Query: 207 NTLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ ++ P + T I G + + A + +
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T N L+DGLCK GRL+ A + M+ G PDVV Y+ ++G CK G+
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLER-MKASGCAPDVVAYSSFVYGLCKSGKVL 239
Query: 309 KANGLLLDMEETGLEPN 325
A+ +L M ++ +PN
Sbjct: 240 NAHQVLEQMRDSDHDPN 256
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 169/364 (46%), Gaps = 56/364 (15%)
Query: 14 ILMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
+++SC P N++T+N LI GLC G++ +AA + K + C PN TF L
Sbjct: 358 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREH 417
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--KDGFMMDQ--------GMRPDVV 113
AL L +EM V P V+ +I+GLC KD + ++ G++P+VV
Sbjct: 418 NMGRALELLDEMEKRNLV---PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 474
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+++ + +G++EEA LL+ M V P+ YN ++ + K
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 534
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----FMAIN- 214
G + D ++ I GY K + +A EML G+ + Y L F A N
Sbjct: 535 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 594
Query: 215 -------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
V PD + +I GL KNG V EA+KVFS + V + T + L
Sbjct: 595 MEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 654
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G CK G ++ A+++ H M G+ P++ YN ++ G CK G Q+A L M E G
Sbjct: 655 ISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713
Query: 322 LEPN 325
LEP+
Sbjct: 714 LEPD 717
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 55/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VTF + I G G++ EAA+ F ++ PN + L + AL++
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 600
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F + + GV+ PDV TC+ I GL K+G + ++G+ PDV T + +
Sbjct: 601 FRRL-HALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 657
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G++E+A L + M + + PN YN L+DG KG D
Sbjct: 658 FCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 717
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y+ +I+GYCK NV +A SL EM S+G++ P S VY +
Sbjct: 718 SVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ-----------------PHSFVYNALV 760
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G K G + +AM +F + K T + N LIDG CK +++ A +F ++ +
Sbjct: 761 HGCCKEGDMEKAMNLFREM-LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ-I 818
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PD VTY +I CK G+ ++AN L +M+E L
Sbjct: 819 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 853
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 147/343 (42%), Gaps = 48/343 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LV 67
LL ++ S PN+V ++ LI +EGRI EA RL ++ P++ +N + L
Sbjct: 460 LLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 519
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
EE ++ G KPD VT I G K G M+D G+ P+
Sbjct: 520 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 579
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
V+ + K G + EA + + V P+ T + + G
Sbjct: 580 LYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL 639
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
KG DV++Y+ LI+G+CK VE A L EM +GI P+
Sbjct: 640 KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI-----------------APN 682
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+Y +DGL K+G + A K+F + T + +IDG CK + A+ +FH
Sbjct: 683 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 742
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M + G+ P YN ++HG CKEG +KA L +M + G
Sbjct: 743 E-MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 52/317 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + P++ T++SLI G C +G + +A L ++ + PN+ +
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686
Query: 62 NTLALVALNLFEEMVNEFGVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
N L +CK D+ + DG M ++G+ PD VT + M D
Sbjct: 687 NALV--------------DGLCKSGDIQRARKLFDG------MPEKGLEPDSVTYSTMID 726
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSKGCRHD 167
K + EA L M + V P++ YN L+ G F +
Sbjct: 727 GYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 786
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
S+N LI+GYCK +++A L +EM+++ I PD YTT I
Sbjct: 787 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIM-----------------PDHVTYTTVI 829
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D K G + EA +F + ++ T L+ G K+G+ + +F ++ G+
Sbjct: 830 DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK-GV 888
Query: 288 TPDVVTYNIMIHGFCKE 304
PD VTY ++I+ CKE
Sbjct: 889 KPDEVTYGLVIYAHCKE 905
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 146/342 (42%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN ++ +I+G+C G I EA L + + PN T+ + A
Sbjct: 261 PNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLT 320
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEEM + G+ KPD C+ +IDG ++G M+ G+ +++T NV+
Sbjct: 321 FEEM-QKTGL--KPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHG 377
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K GKME+A +L+ M+ + GC+ + ++ +LI GYC++
Sbjct: 378 LCKFGKMEKAAEILKGMV---------------------TLGCKPNSRTFCLLIEGYCRE 416
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+ A+ L EM + A +Y + M + + P+ VY
Sbjct: 417 HNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVY 476
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I G + EA ++ + I N +I L K G+++ A + + +Q
Sbjct: 477 SILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA-STYLLEIQ 535
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD VT+ I G+ K G+ +A +M + GL PN
Sbjct: 536 GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 146/328 (44%), Gaps = 57/328 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ VT++++I G C + EA LF ++ P+ +N L A+NL
Sbjct: 716 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 775
Query: 72 FEEMVNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
F EM+ + F ++ +IDG CK M+ + + PD VT + D
Sbjct: 776 FREMLQKGFAT-----TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 830
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKGCRH 166
K GKMEEAN L + M +R++ +T TY +LM G FA + +KG +
Sbjct: 831 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 890
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +Y ++I +CK+ N+ +A L E++ +G+ T ++ L
Sbjct: 891 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL----------------- 933
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L K + EA K+ +G ++ CN L+ + G++ A +F + ++ G
Sbjct: 934 ITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGV-KSLG 992
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLL 314
L PD T +++G + + A L+
Sbjct: 993 LVPDTTTLIDLVNGNLNDTDSEDARNLI 1020
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 125/286 (43%), Gaps = 48/286 (16%)
Query: 69 LNLFEEMVNEFGVICKPD-----VVTCTNIIDGLCKDGFM----------MDQGMRPDVV 113
+ + +E N F + K D ++ C +++ L K G M +D M DV
Sbjct: 171 MGMLDEAANVF-FVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVY 229
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T + L K G + A +L M ++ +NPN Y+ +++G +
Sbjct: 230 TYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM 289
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
KG + Y+Y I+ G C+ + + +A EM G++ PD
Sbjct: 290 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK-----------------PD 332
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ + IDG + G + E +++ + + + + T N LI GLCK G+++ A +I
Sbjct: 333 YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK 392
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G P+ T+ ++I G+C+E +A LL +ME+ L P+
Sbjct: 393 G-MVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPS 437
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Query: 157 FAWWSK---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
F +WS+ G + S++IL C A + +M+ + + + LF
Sbjct: 92 FFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFR 151
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
N V+ ID + G + EA VF N ++++ CN L+ L K G +++
Sbjct: 152 NYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMEL 211
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
W +++ ++ + + DV TY ++ CK G + A +L++M+E GL PN
Sbjct: 212 FWKVYNGML-DAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPN 262
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 42/196 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G++S F L +++ P+ VT+ +I C E ++EA +L ++ ++T
Sbjct: 870 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV----VGKGMLT 925
Query: 61 FNTLALVALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
T+ + + +CK D+ + ++D M + G++P + N +
Sbjct: 926 KGTIHDLLIT----------ALCKREDLTEASKLLDE------MGELGLKPSLAACNTLV 969
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ + GKM+EA + E + + P+T TL+D L+NG
Sbjct: 970 RSFHEAGKMDEATRVFEGVKSLGLVPDT---TTLID------------------LVNGNL 1008
Query: 180 KDRNVEDAVSLCREML 195
D + EDA +L ++++
Sbjct: 1009 NDTDSEDARNLIKQLV 1024
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 174/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++V +N++I G EG + +A LFK++ P+++T++++ A
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ GV+ PD T N+I G G M Q + PDVV LN +
Sbjct: 278 FLRQMVNK-GVL--PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NP+ +Y +++G+A +KGC
Sbjct: 335 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA--TKGCLVDMTDLFDLMLGDGI 392
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D+Y++N+LI Y ++ A+ + EM G++ TY T+ A+
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I +I+ LC
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL PD V YN+++ G+C G+ +KA + M G+EPN
Sbjct: 513 KLGRVMDAQNIFDLTV-NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 167/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++ TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 393 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV+ PD +I G C G + M+ GMR D+V + +
Sbjct: 453 KFNQMIDQ-GVV--PDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P+ YN LMDG+ A S G
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 569
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH- 221
+V Y L+NGYCK +++ +SL REML +GI+ YN LF A VP
Sbjct: 570 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 629
Query: 222 -------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y+ + GL+KN EA+ +F + + I T N +I G+ +
Sbjct: 630 HEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQT 689
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ GL P VTY+IMI KEG ++A + M+ G EP+
Sbjct: 690 RRVEEAKDLFASISRS-GLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPD 745
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + N++ +L GK +A+ LL +M A C DV
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDLLRMM-------------------AEGGTVCSPDVV 222
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN +I+G+ K+ +V A L +EM+ GI D TY+++ A+
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V PD+ Y I G G EA++VF + + + N L+ LCK G++
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKI 342
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G PDV +Y IM++G+ +G
Sbjct: 343 KEARDVFDT-MAMKGQNPDVFSYTIMLNGYATKG 375
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 61/329 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ I+ + ++V F S+I LC GR+++A +F P+ + +N L
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC 547
Query: 66 LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
LV AL +F+ MV+ G+ +P+VV +++G CK G M+ +G++P
Sbjct: 548 LVGKMEKALRVFDAMVSA-GI--EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ N++ D L + G+ A M + + N CT
Sbjct: 605 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT--------------------- 643
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y+I++ G K+R ++A+ L +E+ + ++ D T NT+ I G+
Sbjct: 644 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM-----------------IAGM 686
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++ V EA +F++I V T + +I L K G ++ A D+F MQN G PD
Sbjct: 687 FQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSS-MQNAGCEPD 745
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
N ++ K+ + +A L ++E
Sbjct: 746 SRLLNHVVRELLKKNEIVRAGAYLSKIDE 774
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA--------------TTYNTLFMAIN 214
Y+Y IL++ + E A++ ++L G+R DA T L + ++
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLH 173
Query: 215 NVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTIETCNCLIDGLCK 267
P PD Y + L G +A + A G C + N +IDG K
Sbjct: 174 RTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFK 233
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A D+F ++Q G+ PD+VTY+ ++H CK KA L M G+ P+
Sbjct: 234 EGDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + +N +I GL GR + A F ++ N T
Sbjct: 584 IGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT 643
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGF--MM 104
++ + L F+E + F + K D++T +I G+ KD F +
Sbjct: 644 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASIS 703
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ P VT ++M NL K+G +EEA + M P++ N ++ ++
Sbjct: 704 RSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIV 763
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 764 RAGAYLSKI 772
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 168/362 (46%), Gaps = 68/362 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F +LG+IL + P+ +T N+L+KGLC +G + + K+ N ++
Sbjct: 113 LGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVS 172
Query: 61 FNTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------ 102
+ TL A+ L + E+ +PDVV + IIDGLCKD
Sbjct: 173 YGTLLNGLCKIGETRCAVKLLRMIEDRST------RPDVVMYSTIIDGLCKDKIVNQAYD 226
Query: 103 ----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M +G+ P+V+T + + G++ A LL MI +++NPN
Sbjct: 227 FFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPN------------ 274
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT---------- 208
VY+YNILI+ CK+ V++A L EM +G AD TYN+
Sbjct: 275 ---------VYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQN 325
Query: 209 ------LFMAINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
LFM + + P+ + YT IDGL K G + A K+F + C + + T N
Sbjct: 326 LDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNV 385
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+I GLCK G A + M++ G P+ VT++I+I ++ ++ KA LL M
Sbjct: 386 MISGLCKEGMFDKALAM-KSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAK 444
Query: 321 GL 322
GL
Sbjct: 445 GL 446
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 142/374 (37%), Gaps = 109/374 (29%)
Query: 55 DPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVT 114
D V FN L LV + EFG I +V + + M +G+ P++VT
Sbjct: 47 DDTVSQFNRLLLVR---HTPPIIEFGKILGY-LVKMKHYPTAISLSRQMEVKGIEPNLVT 102
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------- 161
LN++ + G+M + +L +++ P+T T NTLM G
Sbjct: 103 LNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVV 162
Query: 162 ------------------------------------KGCRHDVYSYNILINGYCKDRNVE 185
+ R DV Y+ +I+G CKD+ V
Sbjct: 163 AQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVN 222
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
A EM + GI + TY+TL M + N+ P+ + Y I
Sbjct: 223 QAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILI 282
Query: 228 DGLYKNGFVLEAMKVFSAI---GNHKCVLTIE---------------------------- 256
D L K G V EA K+ + + G V+T
Sbjct: 283 DALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQ 342
Query: 257 ----TCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T LIDGLCK GRLK A +F H+L++ G DV TYN+MI G CKEG KA
Sbjct: 343 PNKYTYTALIDGLCKGGRLKNAQKLFQHLLVK--GCCIDVRTYNVMISGLCKEGMFDKAL 400
Query: 312 GLLLDMEETGLEPN 325
+ ME+ G PN
Sbjct: 401 AMKSKMEDNGCIPN 414
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 167/357 (46%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + F+PN+V + +LI G C +G I +A LF ++ F N T+
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + ++E+M E GV P++ T +++ LCKDG
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKM-QEHGVF--PNLYTYNCVMNQLCKDGRTKDAFKVFDE 293
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M ++G+ ++VT N + L ++ K EAN +++ M +NPN TYNTL+DGF
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGK 353
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G + +YN+L++G+C+ + A + +EM GI+
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIK-------- 405
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P YT ID ++ + A+++ S++ V + T + LI G C
Sbjct: 406 ---------PSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIK 456
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A +F +++ L P+ V YN MI G+CKEG +A L DMEE L PN
Sbjct: 457 GQMNEASRLFKSMVEKM-LEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPN 512
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 142/322 (44%), Gaps = 54/322 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF + ++ PN+ T+N ++ LC +GR +A ++F ++ N++T+
Sbjct: 247 GIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL A A + ++M + + P+++T +IDG C G
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKS---YVINPNLITYNTLIDGFCSVGKLGKALSLCRD 363
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G+ P +VT NV+ + G A +++ M +R + P+ TY L+D FA
Sbjct: 364 LKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDN 423
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G DV++Y++LI+G+C + +A L + M+ + + + YNT
Sbjct: 424 METAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNT 483
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ + G K G A+++F + + + + + LI LCK
Sbjct: 484 MIL-----------------GYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKE 526
Query: 269 GRLKIAWDIFHMLMQNPGLTPD 290
+LK A D+ ++ + G+ P
Sbjct: 527 RKLKEAEDLVEKMI-DSGIDPS 547
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 36/230 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T+N+LI G C+ G++ +A L + L P+++T+N L A +
Sbjct: 336 PNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKM 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+EM E G+ KP VT T +ID + M + G+ PDV T +V+
Sbjct: 396 VKEM-EERGI--KPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHG 452
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------D 167
G+M EA+ L + M+++ + PN YNT++ G+ R +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPN 512
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
V SY+ LI CK+R +++A L +M+ GI T N + A + P
Sbjct: 513 VASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRAKTDSP 562
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LL +I + T ++L+ + S+ + Y ++IN Y + ++++ ++
Sbjct: 58 AQSLLLQVISGKIQSQFFTSSSLLH-YLTESETSKTKSRLYEVIINAYVQSQSLDSSIYY 116
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM+ +G + +N L T++ G F K
Sbjct: 117 FNEMVDKGFVPGSNCFNNLL--------------TFVVG----SSSFNQWWCFFNESKIK 158
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
VL + + +I G C+ G ++ ++D+ + ++ G +P+VV Y +I G CK+G+ +KA
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLL-VELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL N
Sbjct: 218 KDLFFEMGKFGLVAN 232
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/358 (30%), Positives = 163/358 (45%), Gaps = 54/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++L PN VT+N+LI LC GR A ++F + N T
Sbjct: 393 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 452
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N + A+ LFE+M+ + G + P VVT +I+G G
Sbjct: 453 YNEIIKGLCLGGDIEKAMVLFEKML-KMGPL--PTVVTYNTLINGYLTKGNVNNAARLLD 509
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + G PD T N + SK GK+E A+ + M++ +NPN +Y TL+DG +
Sbjct: 510 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDG 569
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +V SYN +ING K+ +A +C +M +G+ + TY
Sbjct: 570 KVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYT 629
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL +NG A K+F + KC+ + T + LI GLC+
Sbjct: 630 TL-----------------IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 672
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ A +I M+ GL PD VT+ +I GF G+ A LL M + G +PN
Sbjct: 673 EGKADEA-EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPN 729
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 175/403 (43%), Gaps = 86/403 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC EGR+ EA + +++ +P V T+ TL +
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY-TLPI 352
Query: 67 VALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
AL E ++ C+P+V T T +I GL + G M+ +G+
Sbjct: 353 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 412
Query: 110 PDVVTLNVMTDNLSKDGK-----------------------------------MEEANCL 134
P+ VT N + + L G+ +E+A L
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCK 180
E M++ P TYNTL++G+ GC D ++YN L++G+ K
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+E A +EM+ G+ + +Y TL M P+
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVES 592
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I+GL K EA K+ + + + T LIDGLC+ GR + A+ IFH +
Sbjct: 593 YNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 652
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L P++ TY+ +I+G C+EG+ +A LL +ME GL P+
Sbjct: 653 KRKCL-PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 694
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 76/380 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G VL ++L P +VT+N+LI G T+G + AARL + C+P+ T+
Sbjct: 464 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 523
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A F+EMV E G+ P+ V+ T +IDG KDG
Sbjct: 524 NELVSGFSKWGKLESASFYFQEMV-ECGL--NPNPVSYTTLIDGHSKDGKVDIALSLLER 580
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M + G P+V + N + + LSK+ + EA + + M ++ + PN TY TL+DG
Sbjct: 581 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGR 640
Query: 157 --FAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
FA+ + C ++Y+Y+ LI G C++ ++A L +EM +G+ D T+ +
Sbjct: 641 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 700
Query: 209 L---FMAINNV---------------PPDSHVYTTYIDGLYKNGFVLE-----AMKVFSA 245
L F+ + + P+ Y+ + GL K +LE + +
Sbjct: 701 LIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYS 760
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
H+ + E + L+ + +IG P + TY+ ++ G C++G
Sbjct: 761 FSPHEKDVNFEIVSNLLARMSEIG-----------------CEPTLDTYSTLVSGLCRKG 803
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +A L+ DM+E G P+
Sbjct: 804 RFYEAEQLVKDMKERGFCPD 823
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 152/319 (47%), Gaps = 49/319 (15%)
Query: 38 RILEAAR-LFKKLNVFCCDPNVITFNTLALV-----ALNLFEEMVNE-FGVICKPDVVTC 90
++E AR L+K++ P+++TFNTL + + E ++++ F PDV T
Sbjct: 219 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 278
Query: 91 TNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
T++I G C++ M+ +G P+ VT + + + L +G+++EA +LE MI+
Sbjct: 279 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 338
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ + P TY + +GCR +V +Y LI+G + +E
Sbjct: 339 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 398
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A+ L +ML EG+ + TYN L I+ L G A+K+F +
Sbjct: 399 AIGLYHKMLKEGLVPNTVTYNAL-----------------INELCVGGRFSTALKIFHWM 441
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
H + +T N +I GLC G ++ A +F +++ G P VVTYN +I+G+ +G
Sbjct: 442 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM-GPLPTVVTYNTLINGYLTKGN 500
Query: 307 HQKANGLLLDMEETGLEPN 325
A LL M+E G EP+
Sbjct: 501 VNNAARLLDLMKENGCEPD 519
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 162/379 (42%), Gaps = 77/379 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEM--- 75
PN V++ +LI G +G++ A L +++ C+PNV ++N + L N F E
Sbjct: 553 PNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 612
Query: 76 ---VNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVTLNVMTDNL 122
+ E G++ P+V+T T +IDGLC++G F + M P++ T + + L
Sbjct: 613 CDKMAEQGLL--PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
++GK +EA LL+ M ++ + P+ T+ +L+DGF + GC+ +
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNY 730
Query: 169 YSYNILING------------------------YCKDRNVEDAVSLCREMLSEGIRADAT 204
+Y++L+ G + KD N E +L M G
Sbjct: 731 RTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLD 790
Query: 205 TYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
TY+TL M PD +Y + + KN V A+K+F +I
Sbjct: 791 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSI 850
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
L + LI LCK G+++ A +F +++ D + + +++ G KEG+
Sbjct: 851 EAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE-WNADEIVWTVLVDGLLKEGE 909
Query: 307 HQKANGLLLDMEETGLEPN 325
LL ME PN
Sbjct: 910 LDLCMKLLHIMESKNFTPN 928
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 126/310 (40%), Gaps = 45/310 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F + + PN+ T++SLI GLC EG+ EA L K++ P+ +TF
Sbjct: 639 GRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTF 698
Query: 62 NTL--ALVALN-------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
+L V L L MV+ V CKP+ T + ++ GL K+ ++++ +
Sbjct: 699 TSLIDGFVVLGRIDHAFLLLRRMVD---VGCKPNYRTYSVLLKGLQKECLLLEEKVAVQH 755
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------------- 158
+ + + KD E + LL M + P TY+TL+ G
Sbjct: 756 EAVYSFSPH-EKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKD 814
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----- 213
+G D Y L+ +CK+ V+ A+ + + ++G + + Y L A+
Sbjct: 815 MKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQ 874
Query: 214 -------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
D V+T +DGL K G + MK+ + + I+T
Sbjct: 875 VEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVI 934
Query: 261 LIDGLCKIGR 270
L L +IG+
Sbjct: 935 LGRELSRIGK 944
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+YS N L+ K VE A +L ++ML+ GI+ T+NTL
Sbjct: 204 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTL----------------- 246
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+ L K G V EA + S I + + T LI G C+ L +A+ +F +++ G
Sbjct: 247 INILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE-G 305
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
P+ VTY+ +I+G C EG+ +A +L +M E G+EP
Sbjct: 306 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 69/313 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR F+LL R++ PN T++ L+KGL E +LE + V+ P+
Sbjct: 708 LGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKD 767
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
N +V+ NL M +E G C+P + T + ++ GLC
Sbjct: 768 VN-FEIVS-NLLARM-SEIG--CEPTLDTYSTLVSGLC---------------------- 800
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ G+ EA L++ M +R P+ Y Y++LI +CK
Sbjct: 801 ---RKGRFYEAEQLVKDMKERGFCPDREIY--------------------YSLLI-AHCK 836
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ V+ A+ + + ++G + + Y L A L K G V EA
Sbjct: 837 NLEVDHALKIFHSIEAKGFQLHLSIYRALICA-----------------LCKAGQVEEAQ 879
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+F + + L+DGL K G L + + H +M++ TP++ TY I+
Sbjct: 880 ALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLH-IMESKNFTPNIQTYVILGRE 938
Query: 301 FCKEGQHQKANGL 313
+ G+ ++ L
Sbjct: 939 LSRIGKSIESEPL 951
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 164/339 (48%), Gaps = 55/339 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+VTF+ +I GLC G+ +A + + + + P+VIT+NT+ A L
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+EMV + P+ +T +IDG C+D M QG++P+VVT N + + L
Sbjct: 288 KEMVAKR---IHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDV 168
+GK++EA L + M + PN TYN L++GF +G +V
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
++N LI+ Y K ++DA L ML G+ + +TYN L I
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCL-----------------IV 447
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH--MLMQNPG 286
G + G V EA K+ + + + T N L+D LCK G + A + LM+ G
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKG 507
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++VTYN++I GFC +G+ ++AN LL +M E GL PN
Sbjct: 508 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPN 546
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 49/305 (16%)
Query: 48 KLNVFCCDPNVITFNTLALVAL--NLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF-- 102
+L+ C+P +++ + + ++++EM+ GV +VVT +I+GLCK G
Sbjct: 191 RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV----NVVTFDVVINGLCKVGKFQ 246
Query: 103 --------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
M G P V+T N + D K GKM +A+ LL+ M+ + ++PN T+N L+
Sbjct: 247 KAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILI 306
Query: 155 DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
DGF +G + +V +YN LING C + +++A+ L +M G++
Sbjct: 307 DGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLK 366
Query: 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+ TYN L I+G K + EA ++ IG + T N
Sbjct: 367 PNVVTYNAL-----------------INGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LID K GR+ A+ + +M + G+ P+V TYN +I GFC+EG ++A L +ME
Sbjct: 410 LIDAYGKAGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468
Query: 321 GLEPN 325
GL+ +
Sbjct: 469 GLKAD 473
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 37/248 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFE 73
PN+VT+NSLI GLC+ G++ EA L K++ PNV+T+N L L
Sbjct: 330 LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAR 389
Query: 74 EMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EM+++ G P+V+T +ID K G M+D G+ P+V T N +
Sbjct: 390 EMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGF 449
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------------AWWSKGCR 165
++G ++EA L + M + + TYN L+D KG R
Sbjct: 450 CREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRR 509
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPP-DSH 221
++ +YN+LI G+C +E+A L EML +G+ + TTY+ L M +P D H
Sbjct: 510 ANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGH 569
Query: 222 VYTTYIDG 229
+Y I
Sbjct: 570 LYNVSISS 577
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 38/238 (15%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
D G R ++ N M +L K+G++ + + MI+R + N T++ +++G
Sbjct: 187 DYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQ 246
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
AW G V +YN +I+GYCK + A +L +EM+++ I + T+N
Sbjct: 247 KAGDVVEDMKAW---GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFN 303
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L IDG ++ V A KVF + + T N LI+GLC
Sbjct: 304 IL-----------------IDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A + M GL P+VVTYN +I+GFCK+ ++A +L D+ + GL PN
Sbjct: 347 NGKLDEALGL-QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPN 403
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 46/191 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F+L +L + PN+ T+N LI G C EG + EA +L K++
Sbjct: 418 GRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME----------- 466
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------------FMMDQGM 108
G K D+VT ++D LCK G M +G
Sbjct: 467 ------------------GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR 508
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV 168
R ++VT NV+ GK+EEAN LL M+++ + PN TY+ L D KG D+
Sbjct: 509 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD--EMMEKGFIPDI 566
Query: 169 --YSYNILING 177
+ YN+ I+
Sbjct: 567 DGHLYNVSISS 577
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 157 FAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
F W K G H+V + L++ +N +L +++T +++L + +
Sbjct: 94 FKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGS 153
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+S + + KNG + A++ F G++ L+ +CN ++ L K GR+ +
Sbjct: 154 WGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVV 213
Query: 275 WDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ M+ + G+ +VVT++++I+G CK G+ QKA ++ DM+ G P+
Sbjct: 214 ESVYKEMIRRRIGV--NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 163/353 (46%), Gaps = 69/353 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F +L +IL + PN +T N+LIKGLC G+I + + KL
Sbjct: 110 LGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLK---------- 159
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A++LF +M+ E PDV T T ++DG CK+G MM QG++P
Sbjct: 160 ------DAVDLFNKMILEN---INPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKP 210
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
VVT N + D ++ +A + M Q V+P D+ S
Sbjct: 211 GVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSP---------------------DIQS 249
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ILING+CK + +++A+ L +EM + I + TY++L M
Sbjct: 250 YSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMH 309
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PP+ Y++ +D L KN V A+ + + + N + T LI GLC+ G+L+
Sbjct: 310 DRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLE 369
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F L+ G +V TY +MI GFC +G +A LL ME+ G PN
Sbjct: 370 DARKVFEDLLVK-GHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPN 421
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 63/343 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++++ P++ TF L+ G C EGR+ EA + + + P V+T
Sbjct: 155 VGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVT 214
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-- 109
+N+L LV A ++F M + GV PD+ + + +I+G CK MMD+ M
Sbjct: 215 YNSLMDGYFLVKQVNKAKSIFNTMA-QLGV--SPDIQSYSILINGFCKIK-MMDEAMELL 270
Query: 110 ---------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
P+VVT + + D L K GK+ A L++ M R PN TY++++D
Sbjct: 271 KEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL--- 327
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
CK+ V++A++L +M ++GI+ P+
Sbjct: 328 ------------------CKNHQVDNAIALLTQMKNQGIQ-----------------PNM 352
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ YT I GL ++G + +A KVF + L + T +I G C G A +
Sbjct: 353 YTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSK 412
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
M++ G P+ TY I+I K+ +++ A LL +M ET +
Sbjct: 413 -MEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFD 454
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++ +++ LI G C + EA L K+++ PNV+T+++L AL
Sbjct: 244 SPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALK 303
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM + P++VT ++I+D LCK+ M +QG++P++ T ++
Sbjct: 304 LVDEMHDRGQ---PPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIK 360
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRH 166
L + GK+E+A + E ++ + N N TY ++ GF SK GC
Sbjct: 361 GLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIP 420
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ +Y I+I K E A L EM+ N L +I
Sbjct: 421 NAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASI 467
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 55/328 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
++ S +PN+ T+N LI+G C+ G + + F ++ C PNV+T+NTL A +
Sbjct: 1 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+E GL K M +GM+P++++ NV+ + L ++G M+EA
Sbjct: 61 IDEAF-------------------GLLKS--MSSKGMQPNLISYNVIINGLCREGSMKEA 99
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
+LE M + P+ TYNTL++G+ G V +Y LIN
Sbjct: 100 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK RN+ A+ +M G+R P+ YTT IDG + G +
Sbjct: 160 MCKARNLNRAMEFFDQMRIRGLR-----------------PNERTYTTLIDGFSRQGLLN 202
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA ++ + + ++ T N I G C + R++ A + +++ GL PDVV+Y+ +
Sbjct: 203 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK-GLAPDVVSYSTI 261
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I GFC++G+ +A + +M E G+ P+
Sbjct: 262 ISGFCRKGELDRAFQMKQEMVEKGVSPD 289
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 169/390 (43%), Gaps = 70/390 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR F LL + PN++++N +I GLC EG + EA + +++ P+ +T
Sbjct: 58 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+NTL AL + EMV GV P VVT T +I+ +CK
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRN-GV--SPSVVTYTALINSMCKARNLNRAMEFFD 174
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+RP+ T + D S+ G + EA +L M + +P+ TYN + G
Sbjct: 175 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE 234
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG DV SY+ +I+G+C+ ++ A + +EM+ +G+ DA TY+
Sbjct: 235 RMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYS 294
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L + +PPD YTT I+ G + +A+ + + +
Sbjct: 295 SLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK 354
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH---------- 299
+ T + LI+GL K R + A + L+ + P VTY+ +I
Sbjct: 355 GFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESV-PSDVTYDTLIENCSNIEFKSV 413
Query: 300 -----GFCKEGQHQKANGLLLDMEETGLEP 324
GFC +G +A+ + M E +P
Sbjct: 414 VALIKGFCMKGLMHEADRVFESMVERNHKP 443
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 48/355 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G G G + + PN+VT+N+LI C GRI EA L K ++ PN+I+
Sbjct: 23 VGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLIS 82
Query: 61 FNTL-----ALVALNLFEEMVNEFGVIC-KPDVVTCTNIIDGLCKDG----------FMM 104
+N + ++ E++ E G PD VT +++G CK+G M+
Sbjct: 83 YNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV 142
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G+ P VVT + +++ K + A + M R + PN TY TL+DGF+
Sbjct: 143 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 202
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G V +YN I+G+C +E+A+ + +EM+ +G+ D +Y+T+
Sbjct: 203 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI- 261
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I G + G + A ++ + T + LI GLC++ R
Sbjct: 262 ----------------ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRR 305
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ ++ + GL PD TY +I+ +C EG KA L +M G P+
Sbjct: 306 LTEACDLSQEML-DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPD 359
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 55/245 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
P++V+++++I G C +G + A ++ +++ P+ +T+++L A
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEAC 310
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
+L +EM++ + PD T T +I+ C +G M+ +G PD VT +V+
Sbjct: 311 DLSQEMLD---MGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 367
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---------------GFAWWSKGC 164
+ L+K + EA LL +I + P+ TY+TL++ GF KG
Sbjct: 368 NGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCM--KGL 425
Query: 165 RHDVYS----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
H+ YN++I+G+C+ N+ A +L +EM+ G T T
Sbjct: 426 MHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVIT 485
Query: 209 LFMAI 213
L A+
Sbjct: 486 LIKAL 490
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 151/323 (46%), Gaps = 57/323 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
PN+ T+N L++ LC G EA + + + C PNV+T+NTL E
Sbjct: 187 APNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE------ 240
Query: 80 GVICKPDVVTCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+DG + G M + G++P++VT N M + + K GKME+A + + M
Sbjct: 241 --------------VDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEM 286
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRH----------------DVYSYNILINGYCKDR 182
++ + P+ +YNTL+ G + GC H DV ++ LI+ CK
Sbjct: 287 VREGLAPDGVSYNTLVGG--YCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAG 344
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
N+E AV+L R+M G++ + T +T IDG K GF+ +A+
Sbjct: 345 NLERAVTLVRQMRERGLQMNEVT-----------------FTALIDGFCKKGFLDDALLA 387
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + ++ N LI+G C +GR+ A ++ H M+ GL PDVVTY+ +I +C
Sbjct: 388 VRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHE-MEAKGLKPDVVTYSTIISAYC 446
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K A L M E G+ P+
Sbjct: 447 KNCDTHSAFELNQQMLEKGVLPD 469
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 171/353 (48%), Gaps = 62/353 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L+G + PN+VTFNS++ G+C G++ +A ++F ++ P+ +++
Sbjct: 239 GEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSY 298
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL + AL++F EM + G++ PDVVT T++I +CK G
Sbjct: 299 NTLVGGYCKAGCSHEALSVFAEMTQK-GIM--PDVVTFTSLIHVMCKAGNLERAVTLVRQ 355
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M ++G++ + VT + D K G +++A + M Q + P+ YN L++G+
Sbjct: 356 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGR 415
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + DV +Y+ +I+ YCK+ + A L ++ML +G+ DA TY++
Sbjct: 416 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 475
Query: 209 LFMAI--NNVPPDSHV-YTTYID-GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
L + D+HV + I GL + F T LIDG
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEF---------------------TYTSLIDG 514
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
CK G ++ A + H M G+ PDVVTY+++I+G K + +A LL +
Sbjct: 515 HCKEGNVESALSL-HDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 145/338 (42%), Gaps = 69/338 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + P++VT++++I C A L +++ P+ IT
Sbjct: 413 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAIT 472
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+++L V A LF+ M+ + G+ +PD T T++IDG CK+G
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMI-KLGL--QPDEFTYTSLIDGHCKEGNVESALSLHD 529
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
M+ G+ PDVVT +V+ + LSK + EA LL + D P Y+ LM
Sbjct: 530 KMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAE 589
Query: 155 --------DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
GF + + D Y++LI+G+C+ NV A+S +
Sbjct: 590 LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHK 649
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ML G ++T+ +L I GL++NG V+EA +V + N+ +
Sbjct: 650 QMLQGGFAPNSTSTISL-----------------IRGLFENGMVVEADQVIQQLLNYCSL 692
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
E LID G + D+ H + ++ GL P
Sbjct: 693 ADAEASKALIDLNLNEGNVDAVLDVLHGMAKD-GLLPS 729
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 172/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + F+PN+V + +LI G C +G I +A LF ++ F N T+
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTY 236
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + ++E+M E GV P++ T +++ LCKDG
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKM-QEHGVF--PNLHTYNCVMNQLCKDGRTKDAFKVFDE 293
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M ++G+ ++VT N + L ++ K EAN +++ M +NPN TYNTL+DGF
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRK 353
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G + +YNIL++G+CK + A + +EM GI+ TY
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTI 413
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L F +N+ PD H Y+ I G G + EA ++F ++ K
Sbjct: 414 LIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKK 473
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
N ++ G CK G A +F M+ L P+V +Y MI CKE + ++A
Sbjct: 474 FEPNEVIYNTMVLGYCKEGSSYRALRLFRE-MEEKELPPNVASYRYMIEVLCKERKSKEA 532
Query: 311 NGLLLDMEETGLEPN 325
GL+ M ++G+ P+
Sbjct: 533 EGLVEKMIDSGIGPS 547
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 37/144 (25%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
TP++ T++ LI G C +GR+ EA+RLFK + +PN + +NT+ L AL
Sbjct: 439 LTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRAL 498
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
LF E M ++ + P+V + M + L K+ K +
Sbjct: 499 RLFRE----------------------------MEEKELPPNVASYRYMIEVLCKERKSK 530
Query: 130 EANCLLEVMIQRDVNPNTCTYNTL 153
EA L+E MI + P+ N +
Sbjct: 531 EAEGLVEKMIDSGIGPSDSILNLI 554
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LL +I + T ++L+ + S+ + Y ++IN Y + ++++ ++
Sbjct: 58 AQSLLLQVISGKIQSQFFTSSSLLH-YLTESETSKTKSRLYEVIINAYVQSQSLDSSIYY 116
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM+ +G + +N L T++ G F K
Sbjct: 117 FNEMVDKGFVPGSNCFNNLL--------------TFVVG----SSSFNQWWCFFNESKIK 158
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
VL + + +I G C+ G ++ ++D+ + ++ G +P+VV Y +I G CK+G+ +KA
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLL-VELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL N
Sbjct: 218 KDLFFEMGKFGLVAN 232
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 163/341 (47%), Gaps = 57/341 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN VTFN+L+ G +GR + RL + + PNV+++N L L L + E
Sbjct: 8 PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHE---- 63
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--PDVVTLNVMTDNLSKDGKMEEANCLLE 136
+ L +D M+ +G R PD+VT + + K GK+EE+ LL+
Sbjct: 64 ---------------AEELVRD--MISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLK 106
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDR 182
+I R + P+ Y ++ ++ GC + ++N LI+G C+++
Sbjct: 107 EVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
N+E A SL ++M + G++AD TYNTL M + PD Y+
Sbjct: 167 NLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYS 226
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+++ GL K+G VL+A +V + + + T N ++DGLCK G++ A ++ + +
Sbjct: 227 SFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASS 286
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +VV Y+ ++ G CK G+ Q+A ++ M G P+
Sbjct: 287 DGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPD 327
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 160/334 (47%), Gaps = 54/334 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P ++TFN+LI G C E + A L +K+ +V+T+NTL L E++
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PDVVTLNVMTDNLSK 124
+ C PDVV ++ + GLCK G ++D + MR P+VVT N + D L K
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269
Query: 125 DGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK++ A ++E M D N Y+T++DG A GCR DV
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y+ L+NG CK +E+AV REM EG + +A TY +L + G
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSL-----------------VHG 372
Query: 230 LYKNGFVLEAMKVFSAI-----GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
L G + EA ++ + G H C ++ T N LI GLCK GR+ A F M++
Sbjct: 373 LCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR-MRS 431
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
G PD V+Y+ ++ G + G+ +A +L ++
Sbjct: 432 QGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 128/283 (45%), Gaps = 57/283 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL R+ S P++V ++S + GLC G++L+A ++ +++ DPNV+T+
Sbjct: 201 GRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTY 260
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NT+ AL + E+M + G C +VV + ++DGLCK G
Sbjct: 261 NTILDGLCKSGKIDTALEMMEQMASSDG--CGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G RPDVVT + + + L K GK+EEA + M PN TY +L+ G +
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378
Query: 163 -------------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
C V +YN LI G CK ++DA+ + M S+G
Sbjct: 379 LAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG----- 433
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
PD Y+T ++GL ++G L+A + S +
Sbjct: 434 ------------CDPDGVSYSTIVEGLARSGRALQAEMILSEV 464
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 36/257 (14%)
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAW 159
MD+ G P+ VT N + + SK G+ + LLE M RD+ PN +YN L++G
Sbjct: 1 MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60
Query: 160 W-----------SKGCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W S+G R D+ +Y+ L++GYCK VE++ L +E++S G+R DA Y
Sbjct: 61 WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120
Query: 207 NTLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ ++ P + T I G + + A + +
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T N L+DGLCK GRL+ A + M+ G PDVV Y+ ++G CK G+
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLER-MKASGCAPDVVAYSSFVYGLCKSGKVL 239
Query: 309 KANGLLLDMEETGLEPN 325
A+ +L M ++ +PN
Sbjct: 240 DAHQVLEQMRDSHHDPN 256
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 168/364 (46%), Gaps = 56/364 (15%)
Query: 14 ILMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
+++SC P N++T+N LI GLC G++ +AA + K + C PN TF L
Sbjct: 70 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREH 129
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--KDGFMMDQ--------GMRPDVV 113
AL L +EM V P V+ +I+GLC KD + ++ G++P+VV
Sbjct: 130 NMGRALELLDEMEKRNLV---PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+ + + +G++EEA LL+ M V P+ YN ++ + K
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----FMAIN- 214
G + D ++ I GY K + +A EML G+ + Y L F A N
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 306
Query: 215 -------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
V PD + +I GL KNG V EA+KVFS + V + T + L
Sbjct: 307 MEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 366
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G CK G ++ A+++ H M G+ P++ YN ++ G CK G Q+A L M E G
Sbjct: 367 ISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 425
Query: 322 LEPN 325
LEP+
Sbjct: 426 LEPD 429
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 157/337 (46%), Gaps = 55/337 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
P+ VTF + I G G++ EAA+ F ++ PN + L + AL
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 310
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
++F + + GV+ PDV TC+ I GL K+G + ++G+ PDV T + +
Sbjct: 311 SIFRHL-HALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
K G++E+A L + M + + PN YN L+DG KG
Sbjct: 368 SGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE 427
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D +Y+ +I+GYCK NV +A SL EM S+G++ P S VY
Sbjct: 428 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ-----------------PHSFVYNA 470
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ G K G + +AM +F + K T + N LIDG CK +++ A +F ++
Sbjct: 471 LVHGCCKEGDMEKAMNLFREM-LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ 529
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ PD VTY +I CK G+ ++AN L +M+E L
Sbjct: 530 -IMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 149/343 (43%), Gaps = 48/343 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LV 67
LL ++ S PN+V +++LI G +EGRI EA RL ++ P++ +N + L
Sbjct: 172 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 231
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
EE ++ G KPD VT I G K G M+D G+ P+
Sbjct: 232 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 291
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
V+ + K G + EA + + V P+ T + + G
Sbjct: 292 LYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL 351
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
KG DV++Y+ LI+G+CK VE A L EM +GI P+
Sbjct: 352 KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI-----------------APN 394
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+Y +DGL K+G + A K+F + T + +IDG CK + A+ +FH
Sbjct: 395 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 454
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M + G+ P YN ++HG CKEG +KA L +M + G
Sbjct: 455 E-MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 166/391 (42%), Gaps = 86/391 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------------------------- 50
PN T+ + GLC R+ EA F+++
Sbjct: 6 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 65
Query: 51 ------VFCCDP-NVITFNTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDG 96
V C P N+IT+N L + L F +M ++ CKP+ T +I+G
Sbjct: 66 RIKDVMVSCGIPINLITYNVL-IHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124
Query: 97 LCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
C++ M + + P V+ M + L + AN LLE M + PN
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184
Query: 147 TCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y+TL+ G+A + G D++ YN +I+ K +E+A +
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244
Query: 193 EMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNG 234
E+ G++ DA T+ + + + P++ +YT I+G +K G
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 304
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
++EA+ +F + + ++TC+ I GL K GR++ A +F L + GL PDV TY
Sbjct: 305 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL-KEKGLVPDVFTY 363
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +I GFCK+G+ +KA L +M G+ PN
Sbjct: 364 SSLISGFCKQGEVEKAFELHDEMCLKGIAPN 394
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 151/359 (42%), Gaps = 42/359 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + P++ T++SLI G C +G + +A L ++ + PN+ +
Sbjct: 339 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N L A LF+ M E G+ +PD VT + +IDG CK + F
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGM-PEKGL--EPDSVTYSTMIDGYCKSENVAEAFSLFHE 455
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G++P N + K+G ME+A L M+Q+ T ++NTL+DG+
Sbjct: 456 MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCK 514
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+K D +Y +I+ +CK +E+A L +EM + D T
Sbjct: 515 IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD--TVFA 572
Query: 209 LF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
LF M V PD Y I K ++EA K+ + + + LI LC
Sbjct: 573 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALC 632
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K L A + M GL P + + ++ F + G+ +A + ++ GL P+
Sbjct: 633 KREDLTEASKLLDE-MGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 70/362 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L + + PN+ +N+L+ GLC G I A +LF + +P+ +T+
Sbjct: 374 GEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTY 433
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+T+ A +LF EM ++ GV +P ++ G CK+G M
Sbjct: 434 STMIDGYCKSENVAEAFSLFHEMPSK-GV--QPHSFVYNALVHGCCKEGDMEKAMNLFRE 490
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------- 156
M Q ++ N + D K K++EA+ L + MI + + P+ TY T++D
Sbjct: 491 MLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 550
Query: 157 --------------------FAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
FA + +KG + D +Y ++I +CK+ N+ +A L
Sbjct: 551 EEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD 610
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
E++ +G+ T ++ L I L K + EA K+ +G
Sbjct: 611 EVVGKGMLTKGTIHDLL-----------------ITALCKREDLTEASKLLDEMGELGLK 653
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
++ C+ L+ + G++ A +F + ++ GL PD T +++G + + A
Sbjct: 654 PSLAACSTLVRSFHEAGKMDEATRVFEGV-KSLGLVPDTTTLIDLVNGNLNDTDSEDARN 712
Query: 313 LL 314
L+
Sbjct: 713 LI 714
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 112/290 (38%), Gaps = 68/290 (23%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP----------------- 145
M ++G+ P+ T ++T L + +M EA E M + + P
Sbjct: 1 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60
Query: 146 ------------------NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
N TYN L+ G + K GC+ + ++ +
Sbjct: 61 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LI GYC++ N+ A+ L EM + A +Y + M +
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P+ VY+T I G G + EA ++ + I N +I L K G+++ A
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA- 239
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + +Q GL PD VT+ I G+ K G+ +A +M + GL PN
Sbjct: 240 STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 36/210 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L ++ P+ VT+ ++I C G++ EA LFK++ + N+I AL
Sbjct: 521 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ----ERNLIVDTVFAL--- 573
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-GMRPDVVTLNVMTDN------- 121
FE+MV + GV KPD VT +I CK+ +++ +R +VV ++T
Sbjct: 574 --FEKMVAK-GV--KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLI 628
Query: 122 --LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
L K + EA+ LL+ M + + P+ +TL+ F K G
Sbjct: 629 TALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV 688
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREML 195
D + L+NG D + EDA +L ++++
Sbjct: 689 PDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 171/365 (46%), Gaps = 56/365 (15%)
Query: 13 RILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---- 67
R + +C P++ +FN LI G C G + EA R +K++ P+V++F+ L +
Sbjct: 253 RAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRR 312
Query: 68 -----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDV 112
A EM EFG++ PD V T +I G C+ G M++ G PDV
Sbjct: 313 GEMDHAAEYLREM-REFGLM--PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
VT N + + L K+ ++ +A LL M +R V P+ CT+ TL+ G+
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
+ R D+ +YN LI+G C+ ++ A L +M S I + TY+ L
Sbjct: 430 ISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + P+ Y + I G ++G V + + + + K + + T N
Sbjct: 490 VDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNT 549
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI G K G++ A+++ +M+N + PD VTYN++I GF G Q+A+ + M
Sbjct: 550 LIHGYVKEGKMHEAFNLLK-IMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGAR 608
Query: 321 GLEPN 325
G+EP+
Sbjct: 609 GIEPD 613
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 157/337 (46%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P+ V + +I G C G +LEA R+ ++ F C P+V+T+NTL L+ EE+
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391
Query: 76 VNEF---GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+NE GV PD+ T T +I G C+DG + DQ +RPD+VT N + D +
Sbjct: 392 LNEMKERGV--PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGM 449
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW----SKGCRHDV 168
+ G + +AN L + M R++ PN TY+ L+D FA+ +KG ++
Sbjct: 450 CRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNI 509
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+YN +I GYC+ NV +M + + D TYNTL I
Sbjct: 510 MTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTL-----------------IH 552
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G K G + EA + + N T N +I G G ++ A D + M G+
Sbjct: 553 GYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEA-DWVYKKMGARGIE 611
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TY MI+G G +K+ L +M + GL P+
Sbjct: 612 PDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 166/366 (45%), Gaps = 61/366 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
+L S N T N ++ C + E + ++ C P+V+T N +
Sbjct: 150 VLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGD 209
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FMMDQ-GMRPDVVT 114
A+ L + MV++ G+ KP +VT +++ GL ++G MD G+ PDV +
Sbjct: 210 VEAAMALIDSMVSK-GI--KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRS 266
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------MDGFAWWSKGCR 165
N++ + G++EEA + M R V P+ +++ L MD A + + R
Sbjct: 267 FNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR 326
Query: 166 H-----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
D Y ++I G+C+ + +A+ + EM++ G D TYNTL
Sbjct: 327 EFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLS 386
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M VPPD +TT I G ++G + +A++ F I + + I T N LI
Sbjct: 387 DAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLI 446
Query: 263 DGLCKIGRLKIA---WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
DG+C+ G L A WD H + + P+ VTY+I+I C++GQ A L +M
Sbjct: 447 DGMCRQGDLGKANELWDDMH----SREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVN 502
Query: 320 TGLEPN 325
G+ PN
Sbjct: 503 KGIVPN 508
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 40/201 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++ PN++T+NS+IKG C G + + + K+ P++IT+
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITY 547
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL G + + + N++ M ++ ++PD VT N++
Sbjct: 548 NTLI-------------HGYVKEGKMHEAFNLLK------IMENENVQPDAVTYNMIISG 588
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
S G M+EA+ + + M R + P D Y+Y +ING+
Sbjct: 589 FSVHGNMQEADWVYKKMGARGIEP---------------------DRYTYMSMINGHVVA 627
Query: 182 RNVEDAVSLCREMLSEGIRAD 202
N + + L EML +G+ D
Sbjct: 628 GNSKKSFQLHDEMLQKGLAPD 648
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 160/344 (46%), Gaps = 61/344 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F + +IL + PN +TF +LIKGLC +G+I +A KL N I+
Sbjct: 135 LGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQIS 194
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL AL+L + G + +P+VV + IIDG+CKD
Sbjct: 195 YGTLIDGLCKVGETRAALDLLRRVD---GKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYS 251
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ P+VVT + + GK+++A L MI ++ P
Sbjct: 252 EMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKP---------------- 295
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
DVY++NIL++ +CK + A+ L EM G PP+
Sbjct: 296 -----DVYTFNILVDVFCKSGKISYALKLVDEMHDRG-----------------QPPNIV 333
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y++ +D L K V +A+ + + + + + T LIDGLC G+L+ A +IF L
Sbjct: 334 TYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDL 393
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G VVTY +M +GFCK+G +A+ LL MEE G P+
Sbjct: 394 LVK-GYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPD 436
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G++P++V N++ + + G + A + +++ NPNT T+ TL+ G +
Sbjct: 116 RGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQ 175
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G + + SY LI+G CK A+ L R R D
Sbjct: 176 ALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLR-------RVDGKL------ 222
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P+ +Y+T IDG+ K+ V +A ++S + + + T + LI G +G+L
Sbjct: 223 ----VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKL 278
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A D+F+ ++ + PDV T+NI++ FCK G+ A L+ +M + G PN
Sbjct: 279 KDAVDLFNKMISE-NIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPN 331
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 165/342 (48%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNL 71
P++V+F++LI L G + +A + F+ + P+ + + N + AL +
Sbjct: 496 PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKV 555
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM+ + C DVVT I++GLCK+ M ++G+ PD T + +
Sbjct: 556 RDEMLEQG---CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 612
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRHDVY-- 169
KDG M +A L E+MIQR++ P+ TYNTL+DGF W+ +Y
Sbjct: 613 YXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 672
Query: 170 --SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----MAINNVPPDSHVY 223
SY ILINGYC V +A L EM+ +G A T NT+ A N V D +
Sbjct: 673 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 732
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ G+ +G T N LI+G K + A+ + + M+
Sbjct: 733 NMLLKGIVPDGI---------------------TYNTLINGFIKEENMDRAFALVNK-ME 770
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PDV+TYN++++GF ++G+ Q+A ++L M E G+ P+
Sbjct: 771 NSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 812
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 55/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L+ + P + T+N++I GLC G+ L A + ++ P+ T+N L
Sbjct: 412 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 471
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+ A +F+EM ++ GV+ PD+V+ + +I L K+G M + G
Sbjct: 472 ECCRNDNMMDAERIFDEMPSQ-GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAG 528
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ PD V ++ ++G M EA + + M+++ + TYNT+++G
Sbjct: 529 LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEAD 588
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+G D Y++ LINGY KD N+ AV+L M+ ++ D TYNTL
Sbjct: 589 ELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 648
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + P+ Y I+G G V EA +++ + TI
Sbjct: 649 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 708
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
TCN ++ G C+ G + D F M G+ PD +TYN +I+GF KE +A L+
Sbjct: 709 ITCNTIVKGYCRAGN-AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVN 767
Query: 316 DMEETGLEPN 325
ME +GL P+
Sbjct: 768 KMENSGLLPD 777
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C +++ GL K G++ + G++ +V TLN+M + L K+ K+E L M
Sbjct: 325 ACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDM 384
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ V P+ TYNTL++ + + KG + V++YN +ING CK
Sbjct: 385 EEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKY 444
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
A + EML G+ D TYN L M V PD ++
Sbjct: 445 LRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSAL 504
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L KNG + +A+K F + N LI G C+ G + A + +++ G
Sbjct: 505 IGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQ-G 563
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYN +++G CKE +A+ L +M E G+ P+
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 602
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 46/205 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S F L ++ F ++T N+++KG C G ++A + + P+ IT
Sbjct: 686 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 745
Query: 61 FNTLALVALNLF---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+NTL +N F E M F ++ K M + G+ PDV+T NV
Sbjct: 746 YNTL----INGFIKEENMDRAFALVNK------------------MENSGLLPDVITYNV 783
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + S+ G+M+EA ++ MI+R VNP+ TY + LING
Sbjct: 784 ILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTS---------------------LING 822
Query: 178 YCKDRNVEDAVSLCREMLSEGIRAD 202
+ N+++A + EML G D
Sbjct: 823 HVTQNNLKEAFRVHDEMLQRGFVPD 847
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+H + S++ +I+ + R + DA ++ M+ + + +L + N + V+
Sbjct: 233 KHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFD 292
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ + + E + F + + ++I CN L+ GL K+G + +AW+I+ ++++
Sbjct: 293 LLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRS 352
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +V T NIMI+ CK + + L DMEE G+ P+
Sbjct: 353 -GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPD 392
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ +I R V + + +++ C + +++L+ Y + R + + R +
Sbjct: 256 QAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLK 315
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S+G+ N+L + GL K G+V A +++ + + +
Sbjct: 316 SKGLCVSINACNSL-----------------LGGLVKVGWVDLAWEIYQEVVRSGVQVNV 358
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N +I+ LCK +++ F M+ G+ PDVVTYN +I+ +C++G ++A L+
Sbjct: 359 YTLNIMINALCKNQKIENTKS-FLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMD 417
Query: 316 DMEETGLEP 324
M GL+P
Sbjct: 418 SMSGKGLKP 426
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 55/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV-- 76
P+ VT+ ++K LC R E LF ++ C P+ +TFNT+ +L L + +
Sbjct: 265 PDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKV 324
Query: 77 ----NEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNL 122
+E G C PD+VT ++I+DGLC G + D G +PD + + L
Sbjct: 325 VDHMSEHG--CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 382
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+ E A L+ M+ D P+ T+NT++ GC D+
Sbjct: 383 CSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDI 442
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------ 216
+YN +I+G C +R ++DA+ L + S G + D T+NTL + +V
Sbjct: 443 VTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVN 502
Query: 217 ------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PPD+ + T I L + G +L+A++ + + C+ T N ++D L K G+
Sbjct: 503 MMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGK 562
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + + TPD++TYN +I K G+ ++A LL M GL P+
Sbjct: 563 TQEALKLLSGMTNG---TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPD 614
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 51/354 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
P+ VTFN+++ LC +G + A ++ ++ C P+++T++++ L + ++ V
Sbjct: 299 APDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVE 358
Query: 78 EFGVI----CKPDVVTCTNIIDGLCK-------DGFMMD---QGMRPDVVTLNVMTDNLS 123
+ CKPD + T ++ GLC + M + PD VT N + +L
Sbjct: 359 LLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLC 418
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G ++ A ++E M + NP+ TYN+++DG S GC+ D+
Sbjct: 419 QKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIV 478
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++N L+ G C EDA L M+ DATT+NT+ M
Sbjct: 479 TFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIM 538
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
A N P+ Y +D L K G EA+K+ S + N L T N +I + K G++
Sbjct: 539 AENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLI--TYNTVISNITKAGKM 596
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D+ +++ N GL+PD +TY + +G C+E +A +L +++ GL P+
Sbjct: 597 EEALDLLRVMVSN-GLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPD 649
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 164/377 (43%), Gaps = 57/377 (15%)
Query: 2 GRASGGFVLLGRILMS--CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
G G + R L+S F P+ TFN LI+ LC GR+ +A +F + C P+V+
Sbjct: 139 GYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVV 198
Query: 60 TFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
T++ L A+ L +EM + C+PD+VT +I+ +C +G
Sbjct: 199 TYSILLDATCKASGYRQAMVLLDEMRAKG---CEPDIVTYNVLINAMCNEGDVDEALNIL 255
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+ G +PD VT + +L + +E L M P+ T+NT++
Sbjct: 256 SDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQ 315
Query: 161 --------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC D+ +Y+ +++G C V+DAV L + S G + D Y
Sbjct: 316 GLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
T+ M ++ PPD + T I L + G V A+KV +
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ C I T N +IDGLC + A ++ L Q+ G PD+VT+N ++ G C + +
Sbjct: 436 NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL-QSYGCKPDIVTFNTLLKGLCSVDRWE 494
Query: 309 KANGLLLDMEETGLEPN 325
A L+++M + P+
Sbjct: 495 DAEQLMVNMMHSDCPPD 511
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 62/334 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77
C +V N LIK LC+ GR+ +A R+F L V+T+NT MVN
Sbjct: 93 CLPLPVVPCNILIKRLCSGGRVADAERVFATLGA---SATVVTYNT-----------MVN 138
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--PDVVTLNVMTDNLSKDGKMEEANCLL 135
+ C+ G +D + GM PD T N + L G++ +A +
Sbjct: 139 GY---CRA----------GRIEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVF 185
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKD 181
+ M+ R +P+ TY+ L+D S KGC D+ +YN+LIN C +
Sbjct: 186 DDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNE 245
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
+V++A+++ ++ S G + DA TY + MA N PD +
Sbjct: 246 GDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTF 305
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T + L + G V A+KV + H C+ I T + ++DGLC +GR+ A ++ L +
Sbjct: 306 NTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL-K 364
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ G PD + Y ++ G C Q + A L+ +M
Sbjct: 365 SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 157/378 (41%), Gaps = 61/378 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + +L +P++VT++ L+ C +A L ++ C+P+++T+
Sbjct: 176 GRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTY 235
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
N L ALN+ ++ + CKPD VT T ++ LC
Sbjct: 236 NVLINAMCNEGDVDEALNILSDLPSHG---CKPDAVTYTPVLKSLCGSERWKEVEELFAE 292
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M PD VT N + +L + G ++ A +++ M + P+ TY++++DG
Sbjct: 293 MASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGR 352
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S GC+ D +Y ++ G C E A L EM+ D T+NT
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M+ N PD Y + IDGL + +AM++ S + ++
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYG 472
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPDVVTYNIMIHGFCKEGQH 307
C I T N L+ GLC + R W+ LM N PD T+N +I C++G
Sbjct: 473 CKPDIVTFNTLLKGLCSVDR----WEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLL 528
Query: 308 QKANGLLLDMEETGLEPN 325
+A L M E G PN
Sbjct: 529 LQAIETLKIMAENGCIPN 546
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 111/256 (43%), Gaps = 63/256 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---- 74
P++VT+NS+I GLC E I +A L L + C P+++TFNTL L +++ +E+
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------------------------- 105
MVN C PD T +I LC+ G ++
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559
Query: 106 -----------QGMR---PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
GM PD++T N + N++K GKMEEA LL VM+ ++P+T TY
Sbjct: 560 AGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYR 619
Query: 152 TLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+L G G D YN ++ G+C++ + A+ M+S
Sbjct: 620 SLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSS 679
Query: 198 GIRADATTYNTLFMAI 213
G D +TY L A+
Sbjct: 680 GCMPDESTYIILLEAL 695
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ ++ S P+ VTFN++I LC +G + A ++ ++++ C+P+++T+N++
Sbjct: 394 LMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLC 453
Query: 70 N------LFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVV 113
N E + N CKPD+VT ++ GLC D + MM PD
Sbjct: 454 NERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDAT 513
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------- 166
T N + +L + G + +A L++M + PN TYN ++D K
Sbjct: 514 TFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM 573
Query: 167 -----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
D+ +YN +I+ K +E+A+ L R M+S G+ D TY +L
Sbjct: 574 TNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAY---------- 623
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HM 280
G+ + A+++ + + N ++ G C+ R IA D F HM
Sbjct: 624 -------GICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHM 676
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ + G PD TY I++ E +A LL+++ G+
Sbjct: 677 V--SSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G V +YN ++NGYC+ +EDA L M PPD+
Sbjct: 125 GASATVVTYNTMVNGYCRAGRIEDARRLISGM--------------------PFPPDTFT 164
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ I L G V +A+ VF + + C ++ T + L+D CK + A + M
Sbjct: 165 FNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDE-M 223
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PD+VTYN++I+ C EG +A +L D+ G +P+
Sbjct: 224 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPD 266
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 157/347 (45%), Gaps = 54/347 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ C P+V+T+ +L
Sbjct: 186 ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 245
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ A LF+EM V+ D V T +I GL + G M QG
Sbjct: 246 GKEKRSFEAYKLFKEMALRGLVL---DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCV 302
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------- 156
PDVVTL+ M D L K G++ A + + M R + PN Y+ L+ G
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362
Query: 157 FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
A K C D +YNILI+G CK +VE A + EML G + D TYN L
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL------ 416
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ G K G A VF + + C + T LI GLCK +L A
Sbjct: 417 -----------VSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKA- 464
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
++ M+ G PD Y+ ++ G CK G+ + L +ME +G+
Sbjct: 465 SLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 511
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 166/357 (46%), Gaps = 57/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR LL +I+ + TP++VT+ SLI GL E R EA +LFK++ + + +
Sbjct: 213 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVC 272
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A ++++ M ++ C PDVVT + +IDGLCK G
Sbjct: 273 YTALIRGLLQAGKIPQASSVYKTMTSQG---CVPDVVTLSTMIDGLCKAGRIGAAVRIFK 329
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+ P+ V + + L K KM+ A +L M + P+T TYN L+DG
Sbjct: 330 SMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSG 389
Query: 158 ------AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A++ + GC+ DVY+YNIL++G+CK N + A + +M S + TY
Sbjct: 390 DVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYG 449
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M PPDS VY++ +DGL K+G + +F +
Sbjct: 450 TLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ER 508
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
V +T LI LCK R+ A +F+ + + G+ P YN +I K +
Sbjct: 509 SGVANSQTRTRLIFHLCKANRVDEAVSLFNAI-RKEGM-PHPYAYNSIISTLIKSAK 563
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
P++ T N ++ GLC G++L A F+ C ++ T+ + L ++ V
Sbjct: 127 APSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVA 186
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLS 123
I C P + T +++GLCK G + +D G PDVVT + D L
Sbjct: 187 LMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 246
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K+ + EA L + M R + +T Y L+ G S+GC DV
Sbjct: 247 KEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 306
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+ + +I+G CK + AV + + M + G+ P+ VY+ I G
Sbjct: 307 TLSTMIDGLCKAGRIGAAVRIFKSMEARGL-----------------APNEVVYSALIHG 349
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K + A+++ + + C T N LIDGLCK G ++ A F +++ G P
Sbjct: 350 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE-AGCKP 408
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV TYNI++ GFCK G A G+ DM + PN
Sbjct: 409 DVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPN 444
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 151/344 (43%), Gaps = 61/344 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F ++ T N+L+ R EA L K P+V T+N L A
Sbjct: 55 FQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAF 114
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---MDQ-------GMRPDVVTLNVMT 119
+ EM ++GV P + T ++ GLCK G + MD G D+ T +
Sbjct: 115 AVIREMEEDYGV--APSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIV 172
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D L+K+ K+++A L+E + + GC + +YN L+NG C
Sbjct: 173 DWLAKNKKIQDAVALMEKIT---------------------ANGCTPTIATYNALLNGLC 211
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K +E+A+ L R+++ G D TY +L MA+ + D+
Sbjct: 212 KMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV 271
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT I GL + G + +A V+ + + CV + T + +IDGLCK GR+ A IF
Sbjct: 272 CYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKS- 330
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GL P+ V Y+ +IHG CK + A +L M++ P+
Sbjct: 331 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 92/214 (42%), Gaps = 55/214 (25%)
Query: 163 GCRHDVYS-----------------------------------YNILINGYCKDRNVEDA 187
G +H V++ +N+LI GYC R E+A
Sbjct: 54 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEA 113
Query: 188 VSLCREMLSE-GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYID 228
++ REM + G+ T+N + + N D H YT +D
Sbjct: 114 FAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVD 173
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L KN + +A+ + I + C TI T N L++GLCK+GRL+ A D+ ++ N G T
Sbjct: 174 WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCT 232
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PDVVTY +I G KE + +A L +M GL
Sbjct: 233 PDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGL 266
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 172/388 (44%), Gaps = 87/388 (22%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N V + LI GLC E RI EA LF K+ C P V T+ L ALNL
Sbjct: 287 NEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLV 346
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
+EM E G+ KP++ T T +ID LC G M+++G+ P+V+T N + +
Sbjct: 347 KEM-EEKGI--KPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVY 169
K G +E+A ++E+M R++ PNT TYN L+ G+ + DV
Sbjct: 404 CKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVV 463
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN LI+G C+ N + A L M G+ D TY ++ ++
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+V P+ +YT IDG K G V EA + + + C+ T N LI GLC G+L
Sbjct: 524 EQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKL 583
Query: 272 K-----------------IAWD--IFHMLMQN---------------PGLTPDVVTYNIM 297
K ++ D + H L+++ G PD TY
Sbjct: 584 KEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTF 643
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I +C+EG+ Q A ++ M+E G+ P+
Sbjct: 644 IQTYCREGRLQDAEDMVAKMKENGVSPD 671
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 165/387 (42%), Gaps = 85/387 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ T+N ++ G C G + EA + + DP+ T+ +L + A +
Sbjct: 216 PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 72 FEEMV------NEFGVI--------------------------CKPDVVTCTNIIDGLCK 99
F+EM NE C P V T T +I LC
Sbjct: 276 FKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCG 335
Query: 100 D----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M ++G++P++ T V+ D+L K+E+A LL M+++ + PN T
Sbjct: 336 SERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVIT 395
Query: 150 YNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YN L++G+ S+ R + +YN LI GYCK RNV A+ + +ML
Sbjct: 396 YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKML 454
Query: 196 SEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+ D TYN+L M + PD YT+ ID L K+ V
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVE 514
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA +F ++ + + LIDG CK G++ A + ++ L P+ +T+N +
Sbjct: 515 EACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCL-PNSLTFNAL 573
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEP 324
IHG C +G+ ++A L M + L+P
Sbjct: 574 IHGLCTDGKLKEATLLEEKMVKIDLQP 600
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 148/376 (39%), Gaps = 89/376 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL + P+ T+ S+I LC R+ EA LF L +VI
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLE----QKDVI-- 529
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
P+VV T +IDG CK G M+ + P+
Sbjct: 530 -----------------------PNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPN 566
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT-----YNTLMDG---FAW---- 159
+T N + L DGK++EA L E M++ D+ P T + L DG A+
Sbjct: 567 SLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQ 626
Query: 160 --WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV- 216
S G + D ++Y I YC++ ++DA + +M G+ D TY++L ++
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLG 686
Query: 217 -----------------PPDSHVYTTYIDGLYKNGF-----------VLEAMKVFSAI-- 246
P H + + I L + + V+ M F +
Sbjct: 687 RTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVE 746
Query: 247 -----GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
H ++ L+ G+C+IG L++A +F + Q G++P + +N ++
Sbjct: 747 LLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCC 806
Query: 302 CKEGQHQKANGLLLDM 317
CK +H +A ++ DM
Sbjct: 807 CKLEKHNEAAKVVDDM 822
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 34/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M++ + P++ T N M + K G +EEAN + ++++ ++P+ TY +L+ G+
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKD 268
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGCR + +Y LI+G C +R +++A+ L +M + TY
Sbjct: 269 LDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTV 328
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ + P+ H YT ID L + +A ++ +
Sbjct: 329 LIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKG 388
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + T N LI+G CK G ++ A D+ LM++ L P+ TYN +I G+CK H KA
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDALDVVE-LMESRNLRPNTRTYNELIKGYCKRNVH-KA 446
Query: 311 NGLLLDMEETGLEPN 325
G+L M E + P+
Sbjct: 447 MGVLNKMLERKVLPD 461
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP---------- 217
YN L+N + V++ + EML + + + TYN + + + NV
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245
Query: 218 -----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD YT+ I G + + A KVF + C LI GLC R+
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+F + M++ P V TY ++I C + +A L+ +MEE G++PN
Sbjct: 306 EAMDLF-VKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPN 357
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 107/275 (38%), Gaps = 60/275 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + FV+L R+ + P+ TF SLIK L ++ ++ C N++
Sbjct: 685 LGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLE----MKYGKVKGGEPGVCVMSNMME 740
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----------DGFMMDQGMR 109
F+ + + L E+MV E GV P+ + ++ G+C+ D +G+
Sbjct: 741 FD----IVVELLEKMV-EHGVT--PNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGIS 793
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
P + N + K K EA +++ MI C G + C+
Sbjct: 794 PSELVFNALLSCCCKLEKHNEAAKVVDDMI--------CV------GHLPQLESCK---- 835
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
ILI K E S+ + +L G D + + IDG
Sbjct: 836 ---ILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKII-----------------IDG 875
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ K G V ++F+ + + C + +T + LI+G
Sbjct: 876 VGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 168/364 (46%), Gaps = 56/364 (15%)
Query: 14 ILMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
+++SC P N++T+N LI GLC G++ +AA + K + C PN TF L
Sbjct: 269 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREH 328
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--KDGFMMDQ--------GMRPDVV 113
AL L +EM V P V+ +I+GLC KD + ++ G++P+VV
Sbjct: 329 NMGRALELLDEMEKRNLV---PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 385
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+ + + +G++EEA LL+ M V P+ YN ++ + K
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 445
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----FMAIN- 214
G + D ++ I GY K + +A EML G+ + Y L F A N
Sbjct: 446 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 505
Query: 215 -------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
V PD + +I GL KNG V EA+KVFS + V + T + L
Sbjct: 506 MEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 565
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G CK G ++ A+++ H M G+ P++ YN ++ G CK G Q+A L M E G
Sbjct: 566 ISGFCKQGEVEKAFEL-HDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 624
Query: 322 LEPN 325
LEP+
Sbjct: 625 LEPD 628
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 55/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VTF + I G G++ EAA+ F ++ PN + L + AL++
Sbjct: 452 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSI 511
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F + + GV+ PDV TC+ I GL K+G + ++G+ PDV T + +
Sbjct: 512 FRHL-HALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 568
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G++E+A L + M + + PN YN L+DG KG D
Sbjct: 569 FCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 628
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y+ +I+GYCK NV +A SL EM S+G++ P S VY +
Sbjct: 629 SVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ-----------------PHSFVYNALV 671
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G K G + +AM +F + K T + N LIDG CK +++ A +F ++ +
Sbjct: 672 HGCCKEGDMEKAMNLFREM-LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQ-I 729
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PD VTY +I CK G+ ++AN L +M+E L
Sbjct: 730 MPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 764
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 149/343 (43%), Gaps = 48/343 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LV 67
LL ++ S PN+V +++LI G +EGRI EA RL ++ P++ +N + L
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
EE ++ G KPD VT I G K G M+D G+ P+
Sbjct: 431 KAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNP 490
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
V+ + K G + EA + + V P+ T + + G
Sbjct: 491 LYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL 550
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
KG DV++Y+ LI+G+CK VE A L EM +GI P+
Sbjct: 551 KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI-----------------APN 593
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+Y +DGL K+G + A K+F + T + +IDG CK + A+ +FH
Sbjct: 594 IFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFH 653
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M + G+ P YN ++HG CKEG +KA L +M + G
Sbjct: 654 E-MPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 166/391 (42%), Gaps = 86/391 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------------------------- 50
PN T+ + GLC R+ EA F+++
Sbjct: 205 LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVL 264
Query: 51 ------VFCCDP-NVITFNTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDG 96
V C P N+IT+N L + L F +M ++ CKP+ T +I+G
Sbjct: 265 RIKDVMVSCGIPINLITYNVL-IHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 323
Query: 97 LCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
C++ M + + P V+ M + L + AN LLE M + PN
Sbjct: 324 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 383
Query: 147 TCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y+TL+ G+A + G D++ YN +I+ K +E+A +
Sbjct: 384 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 443
Query: 193 EMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNG 234
E+ G++ DA T+ + + + P++ +YT I+G +K G
Sbjct: 444 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 503
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
++EA+ +F + + ++TC+ I GL K GR++ A +F L + GL PDV TY
Sbjct: 504 NLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSEL-KEKGLVPDVFTY 562
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +I GFCK+G+ +KA L +M G+ PN
Sbjct: 563 SSLISGFCKQGEVEKAFELHDEMCLKGIAPN 593
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 52/317 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + P++ T++SLI G C +G + +A L ++ + PN+ +
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597
Query: 62 NTLALVALNLFEEMVNEFGVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
N L +CK D+ + DG M ++G+ PD VT + M D
Sbjct: 598 NALV--------------DGLCKSGDIQRARKLFDG------MPEKGLEPDSVTYSTMID 637
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSKGCRHD 167
K + EA L M + V P++ YN L+ G F +
Sbjct: 638 GYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 697
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
S+N LI+GYCK +++A L +EM+++ I PD YTT I
Sbjct: 698 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIM-----------------PDHVTYTTVI 740
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D K G + EA +F + ++ T L+ G K+G+ + +F ++ G+
Sbjct: 741 DWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAK-GV 799
Query: 288 TPDVVTYNIMIHGFCKE 304
PD VTY ++I+ CKE
Sbjct: 800 KPDEVTYGLVIYAHCKE 816
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 57/328 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ VT++++I G C + EA LF ++ P+ +N L A+NL
Sbjct: 627 PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNL 686
Query: 72 FEEMVNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
F EM+ + F ++ +IDG CK M+ + + PD VT + D
Sbjct: 687 FREMLQKGFAT-----TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 741
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKGCRH 166
K GKMEEAN L + M +R++ +T TY +LM G FA + +KG +
Sbjct: 742 WHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKP 801
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +Y ++I +CK+ N+ +A L E++ +G+ T ++ L
Sbjct: 802 DEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL----------------- 844
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I L K + EA K+ +G ++ C+ L+ + G++ A +F + ++ G
Sbjct: 845 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV-KSLG 903
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLL 314
L PD T +++G + + A L+
Sbjct: 904 LVPDTTTLIDLVNGNLNDTDSEDARNLI 931
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 54/344 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V F+ LI G + EAA +F F + I ++L+ N M E G++
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVF-----FVAKNDSIL---ISLIRCNSLRSM-GEKGLV- 206
Query: 84 KPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
P+ T T I GLC+ M G++PD + + D ++G ++E
Sbjct: 207 -PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR 265
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYC 179
+ +VM+ + N TYN L+ G + K GC+ + ++ +LI GYC
Sbjct: 266 IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 325
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
++ N+ A+ L EM + A +Y + M + + P+
Sbjct: 326 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 385
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VY+T I G G + EA ++ + I N +I L K G+++ A + +
Sbjct: 386 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEA-STYLLE 444
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+Q GL PD VT+ I G+ K G+ +A +M + GL PN
Sbjct: 445 IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 86/196 (43%), Gaps = 42/196 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G++S F L +++ P+ VT+ +I C E ++EA +L ++ ++T
Sbjct: 781 LGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV----VGKGMLT 836
Query: 61 FNTLALVALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
T+ + + +CK D+ + ++D M + G++P + + +
Sbjct: 837 KGTIHDLLIT----------ALCKREDLTEASKLLDE------MGELGLKPSLAACSTLV 880
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ + GKM+EA + E + + P+T TL+D L+NG
Sbjct: 881 RSFHEAGKMDEATRVFEGVKSLGLVPDT---TTLID------------------LVNGNL 919
Query: 180 KDRNVEDAVSLCREML 195
D + EDA +L ++++
Sbjct: 920 NDTDSEDARNLIKQLV 935
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 171/376 (45%), Gaps = 75/376 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VTFNSL+KGLC+ R+ EA LF+ + C+PNVI+++TL A L
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL------ 115
+EEMV + C PD+V T+ + GLCK M+ +G + D V
Sbjct: 202 WEEMVEKS---CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258
Query: 116 -----------NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
N M ++L + G ++EA E MI R+ P+ +NTL+
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318
Query: 155 DGFAWWSK-------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
DG + + C ++ +YNI+++ CK + +++A L EM + G+ D TY+
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M+ V PDS + ++ L K G V A+ +
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N L+DGLCK GR+ A F M TPDV +Y I+I C+ GQ
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAI-TFLAKMVAAKCTPDVFSYTIIITALCRSGQAAG 497
Query: 310 ANGLLLDMEETGLEPN 325
A+ + +M + G+ P+
Sbjct: 498 AHAIFQEMVKRGVLPD 513
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 39/343 (11%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--AL 69
+ P+ T++ +++GLC G + +A L +L NVIT++ + + V AL
Sbjct: 69 YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
+F+ M + G C PDVVT +++ GLC +M G P+V++ + +
Sbjct: 129 EIFKTMSSGGG--CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
D L K G+++EA L E M+++ P+ Y + + G +KG +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D +++ +I CK + E+A + E L D M N PP + ++ T
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I + K+ + + + +F + + K C +ET N ++D LCK +L A ++ + M
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE-M 365
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL+PDVVTY+ ++ G CK G+ +A LL +M + G+ P+
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 142/332 (42%), Gaps = 54/332 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMVN 77
N +I+ LC G + EA + F+++ P+ FNTL LF+ M +
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
C P++ T ++D LCK M + G+ PDVVT + + D L K GK
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
++ A LLE M + V P++ T ++++ + K G D+ +YN
Sbjct: 390 LDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
L++G CK +++A++ +M++ PD YT I L ++
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAA-----------------KCTPDVFSYTIIITALCRS 492
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G A +F + + + L+DGL + G +A + L++ PD V
Sbjct: 493 GQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALE----LLKTSLCKPDFVM 548
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ G CK G+ + A ++ M + G +
Sbjct: 549 HKMVLDGLCKAGKAEDACEVVERMADAGFPAD 580
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 33/228 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT----FNTLALV-----AL 69
+P++VT+++L+ GLC G++ A L ++++ P+ T N L+ AL
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYAL 429
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ E M PD+VT ++DGLCK G M+ PDV + ++
Sbjct: 430 SHLETMKARGST---PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-----------WWSKGCRHDV 168
L + G+ A+ + + M++R V P+T Y++L+DG A + C+ D
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDF 546
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ ++++G CK EDA + M G ADA TY ++ + +
Sbjct: 547 VMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKL 594
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 33/229 (14%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G PD T +++ L K G++++A LL + + V N TY+ ++DG S+
Sbjct: 64 MQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASR 123
Query: 163 ---------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC DV ++N L+ G C + +A L
Sbjct: 124 VDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE--------------- 168
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+MA P+ Y+T +DGL K G + EA +++ + CV + + GLCK
Sbjct: 169 --YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCK 226
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
R+ A D M G D V ++ +I CK+G ++A +++
Sbjct: 227 ANRVAEACDCCRK-MVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 151 NTLMDGFAWW--SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+T++ F W KG +H V++YN ++ K + A ++M G
Sbjct: 19 STIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGY--------- 69
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PPD Y+ + GL K G + +A ++ + L + T + +IDG CK
Sbjct: 70 --------PPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A +IF + G PDVVT+N ++ G C + +A L M + G EPN
Sbjct: 122 SRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L +++ + TP++ ++ +I LC G+ A +F+++ P+ + +
Sbjct: 458 GRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLY 517
Query: 62 NTLA-LVALNLFEEMVNEF--GVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
++L +A N E++ E +CKPD V ++DGLCK G M D G
Sbjct: 518 HSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGF 577
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLE 136
D T + L K GK+++A L++
Sbjct: 578 PADAFTYISVVSGLRKLGKVDKARQLVD 605
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 156/331 (47%), Gaps = 52/331 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF-KKLNVFCCDPNVITFNTLALVA 68
LL +L PN+ T+N L++ LC G+ EA + + C PNV+T+NTL
Sbjct: 141 LLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV--- 197
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
C+ V + G+ ++G G+RP +VT N + + L K G+M
Sbjct: 198 -----------AAFCRAGEVDAAERLVGVMREG-----GVRPSLVTFNTVVNGLCKAGRM 241
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
E+A + + M + + P+ +YNTL+ G+ KG DV ++ L
Sbjct: 242 EDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSL 301
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+ C+ N+E AV+L +M G+R + T+ L IDG +NG
Sbjct: 302 IHAMCRAGNLERAVALVGQMRERGLRMNEFTFTAL-----------------IDGFCRNG 344
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
F+ +A+ + + ++ N LI+G CK+GR+ A ++ H M+ G+ PDVVTY
Sbjct: 345 FLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE-MEAKGMKPDVVTY 403
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ G+CK G A L M + G+ P+
Sbjct: 404 STILSGYCKIGDTDSAFELNRKMLKKGVVPD 434
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 176/373 (47%), Gaps = 58/373 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L+G + P++VTFN+++ GLC GR+ +A ++F ++ P+ +++
Sbjct: 204 GEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSY 263
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL AL +F EM + GV+ PDVVT T++I +C+ G
Sbjct: 264 NTLVSGYCKAGCLHEALAVFAEMAQK-GVV--PDVVTFTSLIHAMCRAGNLERAVALVGQ 320
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M ++G+R + T + D ++G +++A ++ M + + P+ YN L++G+
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGR 380
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + DV +Y+ +++GYCK + + A L R+ML +G+ DA TY++
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD YTT IDG K G V +A+ + +
Sbjct: 441 LIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKG 500
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWD-IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ + T + LIDGL K R K A +F + ++P PD + Y ++H C+ + +
Sbjct: 501 VLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDP--VPDNIKYEALMH-CCRTAEFKS 557
Query: 310 ANGLLLDMEETGL 322
LL GL
Sbjct: 558 VVALLKGFSMKGL 570
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 158/339 (46%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
PN+VT+N+L+ C G + A RL + P+++TFNT+ A
Sbjct: 187 APNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARK 246
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
+F+EM E G+ PD V+ ++ G CK G M +G+ PDVVT +
Sbjct: 247 MFDEMARE-GLT--PDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIH 303
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------KGCR--H 166
+ + G +E A L+ M +R + N T+ L+DGF + CR
Sbjct: 304 AMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQP 363
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
V YN+LINGYCK +++A L EM ++G++ D TY+T+ + D+
Sbjct: 364 SVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIG-DTDSAFEL 422
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ K G V +A+ T + LI GLC+ RL A ++F ++Q G
Sbjct: 423 NRKMLKKGVVPDAI----------------TYSSLIRGLCEERRLGDACELFEKMLQ-LG 465
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD TY +I G CKEG QKA L +M + G+ P+
Sbjct: 466 LQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPD 504
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 124/301 (41%), Gaps = 83/301 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L ++L P+ +T++SLI+GLC E R+ +A LF+K+ P+ T
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPD 111
+ TL AL+L +EM+ + GV+ PDVVT + +IDG
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMIKK-GVL--PDVVTYSVLIDG--------------- 514
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------DG 156
LSK + +EA LL + D P+ Y LM G
Sbjct: 515 ----------LSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKG 564
Query: 157 FA-----------WWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
F+ + S RH D Y++LI+G+C+ N+ A+S +++L G
Sbjct: 565 FSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGF--- 621
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P+S + + GL++ G +EA V + N + ET LI
Sbjct: 622 --------------SPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALI 667
Query: 263 D 263
D
Sbjct: 668 D 668
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 175/375 (46%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +LG + +P++ +N++I G C G++ E ++ PNV T+
Sbjct: 491 GRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTY 550
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
A F EM++ G+ P+ V CT++IDG CKDG
Sbjct: 551 GAFIHGYCRAGEMQAAERSFIEMLDS-GI--APNDVICTDLIDGYCKDGNTTKAFAKFRC 607
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M+DQG+ PDV T +V+ LSK+GK++EA + ++ + + P+ TY +L+
Sbjct: 608 MLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD 667
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG ++ +YN LING CK + A L + +G+ ++ TY+T
Sbjct: 668 LKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYST 727
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + VPPDS VY IDG K G +A+ +F + +
Sbjct: 728 IIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGM-VEE 786
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + N LIDG K+G+L A+ + ++ N +TP+ VTY I+I C G ++A
Sbjct: 787 GIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNH-ITPNHVTYTILIEYHCTVGNIKEA 845
Query: 311 NGLLLDMEETGLEPN 325
L ++M++ + PN
Sbjct: 846 EQLFMEMQKRNVMPN 860
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 168/395 (42%), Gaps = 103/395 (26%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
G F + + N T+ +LI GLC G + +A LF ++ + P++ T+N L
Sbjct: 355 GAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLI 414
Query: 65 --------------------------------ALV-----------ALNLFEEMVNEFGV 81
A+V A LF+EM++ +G+
Sbjct: 415 EGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMIS-WGL 473
Query: 82 ICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
KP++V T I+ GL K+G M DQG+ PDV N + K GKMEE
Sbjct: 474 --KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEG 531
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR---------------------HDVYS 170
L MI + + PN TY + G+ CR +DV
Sbjct: 532 KSYLVEMIAKGLKPNVYTYGAFIHGY------CRAGEMQAAERSFIEMLDSGIAPNDVIC 585
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+ LI+GYCKD N A + R ML +G V PD ++ I GL
Sbjct: 586 TD-LIDGYCKDGNTTKAFAKFRCMLDQG-----------------VLPDVQTHSVLIHGL 627
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
KNG + EAM VFS + + V + T LI LCK G LK A+++ H M G+ P+
Sbjct: 628 SKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL-HDDMCKKGINPN 686
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VTYN +I+G CK G+ KA L + E GL N
Sbjct: 687 IVTYNALINGLCKLGEIAKARELFDGIPEKGLARN 721
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 162/362 (44%), Gaps = 55/362 (15%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-------- 66
++ P++ T+ +LI C G++ E + + C PN++T++ +
Sbjct: 224 MLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDV 283
Query: 67 -VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD------GFMMDQ----GMRPDVVTL 115
AL L M N+ G++ PD +IDG C+ M+D+ G++PD V
Sbjct: 284 DEALELKRSMANK-GLL--PDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAY 340
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK--- 162
+ + K + A + E M R + NT TY L+ G +S+
Sbjct: 341 TALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTM 400
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA----------------TT 205
G + D+ +YN LI GY K +N+E A L E+ E + A+A T
Sbjct: 401 MGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTR 460
Query: 206 YNTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
N LF M + P+ +YTT + GL K G EA+K+ + + + N +I
Sbjct: 461 ANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVII 520
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G CK G+++ + + M GL P+V TY IHG+C+ G+ Q A ++M ++G+
Sbjct: 521 GFCKAGKMEEGKS-YLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIA 579
Query: 324 PN 325
PN
Sbjct: 580 PN 581
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 167/358 (46%), Gaps = 58/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M A F+ +L S PN V LI G C +G +A F+ + P+V T
Sbjct: 563 MQAAERSFI---EMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQT 619
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ L A+ +F E++++ G++ PDV T T++I LCK+G
Sbjct: 620 HSVLIHGLSKNGKLQEAMGVFSELLDK-GLV--PDVFTYTSLISNLCKEGDLKAAFELHD 676
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M +G+ P++VT N + + L K G++ +A L + + ++ + N+ TY+T++ G+ +
Sbjct: 677 DMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSA 736
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G D + Y LI+G CK N E A+SL M+ EGI A +N
Sbjct: 737 NLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFN 795
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L IDG +K G ++EA ++ + ++ T LI+ C
Sbjct: 796 AL-----------------IDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCT 838
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G +K A +F M MQ + P+V+TY ++HG+ + G+ + L +M G++P+
Sbjct: 839 VGNIKEAEQLF-MEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPD 895
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 144/364 (39%), Gaps = 58/364 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L + PN+VT+N+LI GLC G I +A LF + N +T+
Sbjct: 666 GDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTY 725
Query: 62 NTLAL---VALNLFEEMVNEFG---VICKPDVVTCTNIIDGLCKDG----------FMMD 105
+T+ + NL E G V PD +IDG CK G M++
Sbjct: 726 STIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVE 785
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ N + D K GK+ EA L+E M+ + PN TY L++
Sbjct: 786 EGI-ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKE 844
Query: 157 -----FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ +V +Y L++GY + + SL EM++ GI+ D ++ +
Sbjct: 845 AEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVD 904
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M V ++YT ID L K+ + E +KV + L
Sbjct: 905 AHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKL 964
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
++ TC L+ + GR A + +++ ++ ++ + G K+NG
Sbjct: 965 SLATCGTLVCCFHRAGRTDEALRVLESMVR---------SFLNLLEFSVRNGNRGKSNGE 1015
Query: 314 LLDM 317
+L +
Sbjct: 1016 MLSI 1019
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 124/316 (39%), Gaps = 53/316 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L P++ T+ SLI LC EG + A L + +PN++T+
Sbjct: 631 GKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTY 690
Query: 62 NTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCK-----DGFMMDQGMR- 109
N L L L + F I + + VT + II G CK + F + GM+
Sbjct: 691 NALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL 750
Query: 110 ----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
PD + D K G E+A L M++ + +T +N L+DGF + G
Sbjct: 751 VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGF--FKLGKL 807
Query: 166 HDVY----------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ Y +Y ILI +C N+++A L EM + + TY +L
Sbjct: 808 IEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSL 867
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD ++ +D K G ++A+K+ + +
Sbjct: 868 LHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV 927
Query: 252 VLTIETCNCLIDGLCK 267
+ LID LCK
Sbjct: 928 NVCKNLYTILIDALCK 943
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ ID K GF+ EA+ VF ++ ++ + CN L L K R+++ W ++ ++
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGML 225
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PDV TY +I+ +C+ G+ ++ +L DMEE G PN
Sbjct: 226 --GAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPN 266
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 40/209 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L+ ++ + TPN VT+ LI+ CT G I EA +LF ++ PNV+T
Sbjct: 804 LGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLT 863
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+ +L L N F + + M+ +G++PD + +VM D
Sbjct: 864 YTSL-LHGYNRIGRRSEMFSLFDE------------------MVARGIKPDDLAWSVMVD 904
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
K+G +A L++ M+ VN C++ Y ILI+ CK
Sbjct: 905 AHLKEGNWIKALKLVDDMLSEGVNV------------------CKN---LYTILIDALCK 943
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTL 209
N+ + + + E+ +G + T TL
Sbjct: 944 HNNLSEVLKVLDEVEKQGSKLSLATCGTL 972
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 163/358 (45%), Gaps = 58/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++L PN VT+N+LI LC GR A ++F + N T
Sbjct: 351 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 410
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N + A+ LFE+M+ + G + P VVT +I+G G
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKML-KMGPL--PTVVTYNTLINGYLTKGNVNNAARLLD 467
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + G PD T N + SK GK+E A+ + M++ +NPN +Y L+DG +
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +V SYN +ING K+ +A +C +M+ +G+ + TY
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL +NG A K+F + KC+ + T + LI GLC+
Sbjct: 588 TL-----------------IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ A M G P + TY+ ++ G C++G+ +A L+ DM+E G P+
Sbjct: 631 EGKADEAER-----MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 159/368 (43%), Gaps = 51/368 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC EGR+ EA + +++ +P V T+ TL +
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY-TLPI 310
Query: 67 VALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
AL E ++ C+P+V T T +I GL + G M+ +G+
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
P+ VT N + + L G+ A + M NT TYN ++ G
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G V +YN LINGY NV +A L M G D TYN L +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 216 ------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ P+ YT IDG K+G V A+ + + C +E+
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I+GL K R A I +++ GL P+V+TY +I G C+ G+ Q A + DM
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQ-GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609
Query: 318 EETGLEPN 325
E+ PN
Sbjct: 610 EKRKCLPN 617
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 160/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L +I +P++ T+ SLI G C + A +F ++ CDPN +T+
Sbjct: 212 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 271
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+TL AL++ EEM+ E G+ +P V T T I LC
Sbjct: 272 STLINGLCNEGRVDEALDMLEEMI-EKGI--EPTVYTYTLPITALCAIEHEEEAIELVAR 328
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G RP+V T + LS+ GK+E A L M++ + PNT TYN L++
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388
Query: 157 -------FAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F W G + +YN +I G C ++E A+ L +ML G TYNT
Sbjct: 389 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N PD Y + G K G + A F +
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ LIDG K G++ IA + M+ G P+V +YN +I+G KE + +A
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 311 NGLLLDMEETGLEPN 325
+ M E GL PN
Sbjct: 568 EKICDKMVEQGLLPN 582
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 168/376 (44%), Gaps = 61/376 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G VL ++L P +VT+N+LI G T+G + AARL + C+P+ T+
Sbjct: 422 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 481
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A F+EMV E G+ P+ V+ T +IDG KDG
Sbjct: 482 NELVSGFSKWGKLESASFYFQEMV-ECGL--NPNPVSYTALIDGHSKDGKVDIALSLLKR 538
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M + G P+V + N + + LSK+ + EA + + M+++ + PN TY TL+DG
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598
Query: 157 --FAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYN 207
FA+ + C ++Y+Y+ LI G C++ ++A E +SE G TY+
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA-----ERMSEIGCEPTLDTYS 653
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M PD +Y + + KN V A+K+F +I
Sbjct: 654 TLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAK 713
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
L + LI LCK G+++ A +F +++ D + + +++ G KEG+
Sbjct: 714 GFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE-WNADEIVWTVLVDGLLKEGELDL 772
Query: 310 ANGLLLDMEETGLEPN 325
LL ME PN
Sbjct: 773 CMKLLHIMESKNFTPN 788
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 152/319 (47%), Gaps = 49/319 (15%)
Query: 38 RILEAAR-LFKKLNVFCCDPNVITFNTLALV-----ALNLFEEMVNE-FGVICKPDVVTC 90
++E AR L+K++ P+++TFNTL + + E ++++ F PDV T
Sbjct: 177 EMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTY 236
Query: 91 TNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
T++I G C++ M+ +G P+ VT + + + L +G+++EA +LE MI+
Sbjct: 237 TSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIE 296
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ + P TY + +GCR +V +Y LI+G + +E
Sbjct: 297 KGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEV 356
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A+ L +ML EG+ + TYN L I+ L G A+K+F +
Sbjct: 357 AIGLYHKMLKEGLVPNTVTYNAL-----------------INELCVGGRFSTALKIFHWM 399
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
H + +T N +I GLC G ++ A +F +++ G P VVTYN +I+G+ +G
Sbjct: 400 EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM-GPLPTVVTYNTLINGYLTKGN 458
Query: 307 HQKANGLLLDMEETGLEPN 325
A LL M+E G EP+
Sbjct: 459 VNNAARLLDLMKENGCEPD 477
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 49/298 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL R+ PN+ ++N++I GL E R EA ++ K+ PNVIT+
Sbjct: 527 GKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITY 586
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ 106
TL A +F +M C P++ T +++I GLC++G M +
Sbjct: 587 TTLIDGLCRNGRTQFAFKIFHDMEKR---KCLPNLYTYSSLIYGLCQEGKADEAERMSEI 643
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P + T + + L + G+ EA L++ M +R P+ Y +L+
Sbjct: 644 GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA 703
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+ +KG + + Y LI CK VE+A +L ML + AD
Sbjct: 704 LKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI-------- 755
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
V+T +DGL K G + MK+ + + I+T L L +IG+
Sbjct: 756 ---------VWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 804
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+YS N L+ K VE A +L ++ML+ GI+ T+NTL
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTL----------------- 204
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+ L K G V EA + S I + + T LI G C+ L +A+ +F +++ G
Sbjct: 205 INILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE-G 263
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
P+ VTY+ +I+G C EG+ +A +L +M E G+EP
Sbjct: 264 CDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 53/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVAL 69
IL S + PN+ TFN L+ LC EG++ +A +F ++ P ++FNTL +
Sbjct: 222 EILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSG 281
Query: 70 NLFE----EMV-NEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVT 114
NL E +MV EF V PDV T + +IDGLCK+ M D+G+ P+ VT
Sbjct: 282 NLEEGFRLKMVMEEFRVF--PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVT 339
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
+ + K+G+++ A + + M + + + YNTL+DG
Sbjct: 340 FTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMT 399
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+G D ++Y L++G CK+ ++E A+ + +EM+ EGI+ D + +
Sbjct: 400 KRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIV 459
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + PD YT +DG K G V K+ + + + + T N L+
Sbjct: 460 DAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLM 519
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+GLCK G++K A D+ M N G+ PD +TYNI++ G CK G+
Sbjct: 520 NGLCKQGQVKNA-DMLLNAMLNLGVVPDDITYNILLQGHCKHGK 562
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
++D G P+V T NV+ + L K+GK+++A + + + + + P ++NTL++G+
Sbjct: 223 ILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGN 282
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G R DV++Y+ LI+G CK+ +EDA L +EM G+ + T+ T
Sbjct: 283 LEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTT 342
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + D +Y T IDGL K G+ EA K +
Sbjct: 343 LINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG 402
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T L+DG CK G L++A ++ +++ G+ D V + +I G C++G+ A
Sbjct: 403 LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKE-GIQLDNVAFTAIISGLCRDGKIVDA 461
Query: 311 NGLLLDMEETGLEPN 325
L +M GL+P+
Sbjct: 462 ERTLREMLRAGLKPD 476
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 103/271 (38%), Gaps = 75/271 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++ ++V +N+LI GLC G EA + ++ P+ T+
Sbjct: 351 GRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTY 410
Query: 62 NTLA---------LVALNLFEEMVNE--------FGVIC--------------------- 83
TL +AL + +EMV E F I
Sbjct: 411 TTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLR 470
Query: 84 ---KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
KPD T T ++DG CK G M G P V+T NV+ + L K G+++
Sbjct: 471 AGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKN 530
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A+ LL M+ V P+ T YNIL+ G+CK + D ++
Sbjct: 531 ADMLLNAMLNLGVVPDDIT---------------------YNILLQGHCKHGKLGDFQNV 569
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSH 221
EM G+ +D +Y +L ++ D
Sbjct: 570 KTEM---GLVSDYASYRSLLHELSKASKDRQ 597
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 86/183 (46%), Gaps = 3/183 (1%)
Query: 144 NPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
NP +L+ F + S H V SY +++ R + A SL ++S +
Sbjct: 84 NPYFLPPKSLLSFFDFLSSYPTFSHTVQSYCSMVHFLIAHRMNQQAESLLHFVVSRKGKG 143
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
A++ + S V+ + + G+V +A++ F H + C CL
Sbjct: 144 SASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCL 203
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
++ + K+ +A + F++ + + G P+V T+N++++ CKEG+ + A + ++ +TG
Sbjct: 204 LERMIKMSSPMVALE-FYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTG 262
Query: 322 LEP 324
L+P
Sbjct: 263 LQP 265
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 161/355 (45%), Gaps = 50/355 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F P++ T+NSLI G+C G +A + +++ + C PN +T+NTL AL N E
Sbjct: 294 FDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAAT 353
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ ++ PDV T +I GLC M ++G +PD T +++ D+L
Sbjct: 354 DLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
+ +++EA LL+ M N YNTL+DG + G
Sbjct: 414 CYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSS 473
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN LI+G CK++ VE+A L +M+ EG++ D TYN+L
Sbjct: 474 VTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQT 533
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
MA N PD Y T I GL + G V A K+ ++ VLT N +I L R
Sbjct: 534 MASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKR 593
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEP 324
K +F +M+ PD +T+ I+ G C G Q+A ++M E G+ P
Sbjct: 594 TKEGMRLFREMMEKSD-PPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILP 647
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 160/335 (47%), Gaps = 54/335 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V+ L+ G C EGR+ EA R +++ P+ +TFN+L VN F C
Sbjct: 229 VSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSL-----------VNGF---C 274
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+ N+ D L FM+++G PDV T N + + K G+ E+A +L+ MI R+
Sbjct: 275 R-----IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILREC 329
Query: 144 NPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
+PNT TYNTL+ SKG DV ++N LI G C +N + A+
Sbjct: 330 SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAME 389
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+ EM ++G + D TY+ L M + ++ VY T IDGL
Sbjct: 390 MFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLC 449
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPD 290
K+ + +A ++F + + T N LIDGLCK R++ A + M+M+ GL PD
Sbjct: 450 KSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIME--GLKPD 507
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN ++ FC+ G +KA ++ M G EP+
Sbjct: 508 KFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPD 542
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 149/362 (41%), Gaps = 57/362 (15%)
Query: 18 CFTPNMVTFN------SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN- 70
C TP+ T + +L+ L L K+L PN TF TL N
Sbjct: 44 CTTPSSTTHHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNF 103
Query: 71 -----LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTL 115
L + + NE G KPD ++ L +D M+++G+ DV T
Sbjct: 104 HEIENLLKILENELGF--KPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTF 161
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWS 161
NV+ L K ++ A +LE M + P+ T+ TLM GF
Sbjct: 162 NVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLG 221
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------ 209
GC S +L+NG+CK+ VE+A+ E+ EG D T+N+L
Sbjct: 222 YGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVND 281
Query: 210 ------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
FM PD + Y + I G+ K G +A+++ + +C T N LI
Sbjct: 282 ALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLIS 341
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LCK ++ A D+ +L+ GL PDV T+N +I G C A + +M+ G +
Sbjct: 342 ALCKENEIEAATDLARILVSK-GLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCK 400
Query: 324 PN 325
P+
Sbjct: 401 PD 402
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 171/376 (45%), Gaps = 75/376 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VTFNSL+KGLC+ R+ EA LF+ + C+PNVI+++TL A L
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL------ 115
+EEMV + C PD+V T+ + GLCK M+ +G + D V
Sbjct: 202 WEEMVEKS---CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGI 258
Query: 116 -----------NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
N M ++L + G ++EA E MI R+ P+ +NTL+
Sbjct: 259 LCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLP 318
Query: 155 DGFAWWSK-------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
DG + + C ++ +YNI+++ CK + +++A L EM + G+ D TY+
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M+ V PDS + ++ L K G V A+ +
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR 438
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N L+DGLCK GR+ A F M TPDV +Y I+I C+ GQ
Sbjct: 439 GSTPDLVTYNTLLDGLCKAGRIDEAI-TFLAKMVAAKCTPDVFSYTIIITALCRSGQAAG 497
Query: 310 ANGLLLDMEETGLEPN 325
A+ + +M + G+ P+
Sbjct: 498 AHAIFQEMVKRGVLPD 513
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 165/343 (48%), Gaps = 39/343 (11%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--AL 69
+ P+ T++ +++GLC G + +A L +L NVIT++ + + V AL
Sbjct: 69 YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
+F+ M G C PDVVT +++ GLC +M G P+V++ + +
Sbjct: 129 EIFKTMSAGGG--CVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
D L K G+++EA L E M+++ P+ Y + + G +KG +
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSK 246
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D +++ +I CK + E+A + E L D M N PP + ++ T
Sbjct: 247 ADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNT 306
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I + K+ + + + +F + + K C +ET N ++D LCK +L A ++ + M
Sbjct: 307 LIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE-M 365
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL+PDVVTY+ ++ G CK G+ +A LL +M + G+ P+
Sbjct: 366 ANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPD 408
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 142/332 (42%), Gaps = 54/332 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMVN 77
N +I+ LC G + EA + F+++ P+ FNTL LF+ M +
Sbjct: 270 NQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKS 329
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
C P++ T ++D LCK M + G+ PDVVT + + D L K GK
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGK 389
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
++ A LLE M + V P++ T ++++ + K G D+ +YN
Sbjct: 390 LDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNT 449
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
L++G CK +++A++ +M++ PD YT I L ++
Sbjct: 450 LLDGLCKAGRIDEAITFLAKMVAA-----------------KCTPDVFSYTIIITALCRS 492
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G A +F + + + L+DGL + G +A + L++ PD V
Sbjct: 493 GQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALE----LLKTSLCKPDFVM 548
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ G CK G+ + A ++ M + G +
Sbjct: 549 HKMVVDGLCKAGKAEDACEVVERMADAGFPAD 580
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 33/218 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT----FNTLALV-----AL 69
+P++VT+++L+ GLC G++ A L ++++ P+ T N L+ AL
Sbjct: 370 LSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYAL 429
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ E M PD+VT ++DGLCK G M+ PDV + ++
Sbjct: 430 SHLETMKARGST---PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIII 486
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-----------WWSKGCRHDV 168
L + G+ A+ + + M++R V P+T Y++L+DG A + C+ D
Sbjct: 487 TALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDF 546
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ ++++G CK EDA + M G ADA TY
Sbjct: 547 VMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTY 584
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 33/229 (14%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G PD T +++ L K G++++A LL + + V N TY+ ++DG S+
Sbjct: 64 MQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASR 123
Query: 163 ---------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC DV ++N L+ G C + +A L
Sbjct: 124 VDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE--------------- 168
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+MA P+ Y+T +DGL K G + EA +++ + CV + + GLCK
Sbjct: 169 --YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCK 226
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
R+ A D M G D V ++ +I CK+G ++A +++
Sbjct: 227 ANRVAEACDCCRK-MVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 19/177 (10%)
Query: 151 NTLMDGFAWW--SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+T++ F W KG +H V++YN ++ K + A ++M G
Sbjct: 19 STIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGY--------- 69
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PPD Y+ + GL K G + +A ++ + L + T + +IDG CK
Sbjct: 70 --------PPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKA 121
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A +IF + G PDVVT+N ++ G C + +A L M + G EPN
Sbjct: 122 SRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPN 178
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 19/159 (11%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
TP++VT+N+L+ GLC GRI EA K+ C P+V ++ + A A
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGM-RPDVVTLNVMTDNLS 123
+F+EMV GV+ PD V +++DGL ++G ++ + +PD V ++ D L
Sbjct: 501 IFQEMVKR-GVL--PDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLC 557
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
K GK E+A ++E M + TY ++ G K
Sbjct: 558 KAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGK 596
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L +++ + TP++ ++ +I LC G+ A +F+++ P+ + +
Sbjct: 458 GRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLY 517
Query: 62 NTLA-LVALNLFEEMVNEF--GVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
++L +A N E++ E +CKPD V ++DGLCK G M D G
Sbjct: 518 HSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGF 577
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLE 136
D T + L K GK+++A L++
Sbjct: 578 PADAFTYINVVRGLRKLGKVDKARQLVD 605
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 160/344 (46%), Gaps = 79/344 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+ +L S +PN+ T+N LI+G C G I A LF K+ C PNV+T+NTL
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTL----- 246
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
IDG CK DGF M +G+ P++++ NV+
Sbjct: 247 ------------------------IDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ L ++G+M+E + +L M +R + + TYNT LI GYC
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT---------------------LIKGYC 321
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K+ N A+ + EML G+ TY +L M + + P+
Sbjct: 322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER 381
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YTT +DG + G++ EA +V + ++ ++ T N LI+G C G+++ A +
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED- 440
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GL+PDVV+Y+ ++ GFC+ +A + +M E G++P+
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 175/418 (41%), Gaps = 107/418 (25%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
GF LL + + PN++++N +I GLC EGR+ E + + ++N + +T+NTL
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------------ 99
AL + EM+ G+ P V+T T++I +CK
Sbjct: 319 GYCKEGNFHQALVMHAEMLRH-GLT--PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 100 ------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
DGF M D G P VVT N + + GKME+A
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+LE M ++ ++P+ +Y+T++ GF KG + D +Y+ LI G+
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ R ++A L EML G+ D TY L M V PD
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-------IETCN--------CLIDGL 265
Y+ I+GL K EA ++ + + V + IE C+ LI G
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 266 CKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
C G + A +F ML +N PD YNIMIHG C+ G +KA L +M ++G
Sbjct: 616 CMKGMMTEADQVFESMLGKNH--KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 33/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGK-MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G P V++ N + D + + + A + + M++ V+PN TYN L+ GF +
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+KGC +V +YN LI+GYCK R ++D L R M +G+ + +YN +
Sbjct: 223 VALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVV- 281
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I+GL + G + E V + + L T N LI G CK G
Sbjct: 282 ----------------INGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + H M GLTP V+TY +IH CK G +A L M GL PN
Sbjct: 326 FHQAL-VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 51/262 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L + +P++V++++++ G C + EA R+ +++ P+ IT+
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
++L A +L+EEM+ V PD T T +I+ C +G
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLR---VGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M+++G+ PDVVT +V+ + L+K + EA LL + + P+ TY+TL++
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605
Query: 156 --------GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
GF + K + D +YNI+I+G+C+ ++ A +L +E
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Query: 194 MLSEGIRADATTYNTLFMAINN 215
M+ G T L A++
Sbjct: 666 MVKSGFLLHTVTVIALVKALHK 687
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 171/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + F+PN+V + +LI G C G I +A LF ++ F N T+
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTY 236
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + ++E+M E GV P++ T +++ CKDG
Sbjct: 237 TVLIHGLFKNGIKKQGFEMYEKM-QEDGVF--PNLYTYNCVMNQHCKDGRTKDAFKLFDE 293
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M ++G+ ++VT N + L ++ K EAN +++ M +NPN TYNTL+DGF
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G + +YNIL++G+CK + A + +EM GI+ TY
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTI 413
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L F ++N+ PD H Y+ I G G + EA ++F + K
Sbjct: 414 LIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKK 473
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
N ++ G CK G A +F M+ L P+V +Y MI CKE + ++A
Sbjct: 474 LEPNKVIYNTMVLGYCKEGSSYRALRLFRE-MEEKELPPNVASYRYMIEVLCKERKSKEA 532
Query: 311 NGLLLDMEETGLEPN 325
GL+ M +TG++P+
Sbjct: 533 EGLVEKMIDTGIDPS 547
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 162/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +F +IKG C G I ++ L +L F PNV+ + TL A +LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM +FG++ + T T +I GL K+G M + G+ P++ T N + +
Sbjct: 222 FEM-GKFGLVA--NEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQH 278
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
KDG+ ++A L + M +R V+ N TYNTL+ G S G ++
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN LI+G+C + A+SLCR++ S G+ TYN L
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + P YT ID + + +A+++ S + + T + LI G C G+
Sbjct: 399 MEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQ 458
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A +F LM L P+ V YN M+ G+CKEG +A L +MEE L PN
Sbjct: 459 MNEASRLFK-LMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPN 512
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 40/235 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T+N+LI G C G++ +A L + L P+++T+N L A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDN 121
+EM E G+ KP +T T +ID + M + G+ PDV T +V+
Sbjct: 396 VKEM-EERGI--KPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHG 452
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------D 167
G+M EA+ L ++M+ + + PN YNT++ G+ R +
Sbjct: 453 FCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPN 512
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V SY +I CK+R ++A L +M+ GI + N + A N DSHV
Sbjct: 513 VASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAKN----DSHV 563
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 19/212 (8%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LL +I + T ++L+ + S+ Y ++IN Y + ++++ ++S
Sbjct: 58 AQSLLLQVISGKIQSQFFTSSSLLH-YVTESETSETKSRLYEVMINAYVQSQSLDSSISY 116
Query: 191 CREMLSEGIRADATTYNTL---------------FMAINNVPPDSHVYT--TYIDGLYKN 233
EM+ +G + +N L F + + D VY+ I G +
Sbjct: 117 FNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEA 176
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + ++ + + + LIDG CK G ++ A D+F M GL + T
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF-FEMGKFGLVANEWT 235
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++IHG K G ++ + M+E G+ PN
Sbjct: 236 YTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPN 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 37/144 (25%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
TP++ T++ LI G C +G++ EA+RLFK + +PN + +NT+ L AL
Sbjct: 439 LTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRAL 498
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
LF EM ++ + P+V + M + L K+ K +
Sbjct: 499 RLFREM----------------------------EEKELPPNVASYRYMIEVLCKERKSK 530
Query: 130 EANCLLEVMIQRDVNPNTCTYNTL 153
EA L+E MI ++P+ N +
Sbjct: 531 EAEGLVEKMIDTGIDPSDSILNLI 554
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 165/344 (47%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN------ 70
+P+ V++ +LI LC GR+ +A F ++ PN++ F++L L +++
Sbjct: 61 LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120
Query: 71 -LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
LF EM+N V P++V I+ LCK+G +M+ G+RPDV++ N +
Sbjct: 121 ELFFEMLN---VGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI 177
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D G ++EA+ LLE M+ + PN+ +SYN L++GYC
Sbjct: 178 DGHCLAGTIDEASKLLEGMVSVGLKPNS---------------------FSYNTLLHGYC 216
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS------------------H 221
K ++ A SL R+MLS GI TYNT+ + S +
Sbjct: 217 KAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIY 276
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T ++GL K+ V EA K+F ++ + L I T +I L K GR + A D+F +
Sbjct: 277 TYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAI 336
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PDVVTY ++ +EG ++ + L ME+ G PN
Sbjct: 337 PAN-GLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPN 379
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 164/358 (45%), Gaps = 61/358 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL- 64
F LGR++ + +T +TF+ L+KGLC + R +A + +++ C PN ++N L
Sbjct: 115 AFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILL 174
Query: 65 --------ALVALNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
+ AL+L M+ ++ C PDVV+ T +I+GL ++G M+D
Sbjct: 175 KGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLD 234
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
QGM P+ +T N + GK +EA + M + V P+ TYNTLM
Sbjct: 235 QGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLM----------- 283
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
VY CK+ +A + M+ +G + D++ Y TL
Sbjct: 284 --VY--------LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQL 333
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M N PD +++ I K+G V EAM FS + I T ++D LC+
Sbjct: 334 LDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCR 393
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G++ A F L+ + GLTP+ V + +IHG C + KA L ++M G+ PN
Sbjct: 394 VGKVDDAMSQFDRLI-SEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPN 450
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 158/360 (43%), Gaps = 62/360 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L +L +PN +T+N L+ G C+ G+ EA +F+K+ +P+V+T+
Sbjct: 220 GQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTY 279
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL ++ A +F+ MV + KPD ++ G +G+
Sbjct: 280 NTLMVYLCKNGRSMEARKVFDSMVKKGH---KPDSSIYGTLLHGYATEGYLVQMHQLLDV 336
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G +PD N++ +K G ++EA M Q+ ++PN TY T+MD
Sbjct: 337 MVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDAL----- 391
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------- 213
C+ V+DA+S ++SEG+ + + TL +
Sbjct: 392 ----------------CRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKA 435
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ P++ + T ++ L K G V A +F + + T LIDG
Sbjct: 436 EELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDG 495
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
C G++ A + ++ + G+ P+ VTYN +I+G+CK G+ + A L M G+ P
Sbjct: 496 YCLDGKVDEATKLLEGMVLD-GVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNP 554
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 167/365 (45%), Gaps = 65/365 (17%)
Query: 2 GRASGGFV-----LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G A+ G++ LL ++ + P+ FN LI G + EA F K+ P
Sbjct: 320 GYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHP 379
Query: 57 NVITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-DGF------- 102
N++T+ T+ AL + ++ +++F + P+ V +I GLC D +
Sbjct: 380 NIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELA 439
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M+ +G+ P+ + N + ++L K+G + A + ++M++ DV + TY TL+DG+
Sbjct: 440 VEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLD 499
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
K G + + +YN +INGYCK+ +EDA SL R+M S+G
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKG-------- 551
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V P +Y+T + GL++ + A +++ + L I T N ++ GLC
Sbjct: 552 ---------VNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLC 602
Query: 267 KIGRLKIAWDIFHML------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+ A +FH L +QN T+NIMI K G+H +A L +
Sbjct: 603 QNNCTDDALRMFHNLCLIDFHLQNR-------TFNIMIDALLKGGRHDEAKDLFASLLAR 655
Query: 321 GLEPN 325
GL PN
Sbjct: 656 GLVPN 660
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 152/335 (45%), Gaps = 51/335 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ TF L++GLC ++ +A +L ++ C P+ +N L A
Sbjct: 8 PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EMV C P VVT TNI+DGLCK G M D+G P++ T NV+ +
Sbjct: 68 LAEMVKNH---CLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------GCRHDVYS 170
L ++ K++EA +LE M R P+ TYN+ + G + DV S
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS 184
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING CK +++ A + +M + G D TY++L IDG
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSL-----------------IDGF 227
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G V AM + ++ C + N L+ L ++G + A D+ + M+ G TPD
Sbjct: 228 CKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML-VEMERRGFTPD 286
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV+YN I G CK + +KA + M E G PN
Sbjct: 287 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPN 321
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 48/351 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + +PN+ T+N +++GLC E ++ EA ++ +++ V P+V+T+
Sbjct: 94 GRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTY 153
Query: 62 NTL--ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG------FMMDQ----GM 108
N+ L + +E + PDVV+ T +I+GLCK G M+DQ G
Sbjct: 154 NSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGC 213
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
PDVVT + + D K G++E A LL+ M++ PN YN+L+
Sbjct: 214 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAED 273
Query: 158 ---AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
+G DV SYN I+G CK V+ A ++ M+ G +A++Y+ L
Sbjct: 274 MLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML----- 328
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
++ L K + +A+ + ++ I L+DGLCK GR A
Sbjct: 329 ------------VEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEA 376
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F ++ PDV YN+M+ CK Q KA L + + LE N
Sbjct: 377 CALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKA----LQIHKQMLERN 423
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 123/267 (46%), Gaps = 45/267 (16%)
Query: 83 CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C+PD T ++ GLC+ G M + G PD N + SK +A
Sbjct: 6 CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
L M++ P TY ++DG KGC ++Y+YN+++ G
Sbjct: 66 KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
C++R +++A ++ML E MA+ PD Y ++I GL K V E
Sbjct: 126 CEERKLDEA----KKMLEE-------------MAVRGYFPDVVTYNSFIKGLCKCDRVDE 168
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A K + + V++ T +I+GLCK G L A + M N G TPDVVTY+ +I
Sbjct: 169 ARKFLARMPVTPDVVSYTT---VINGLCKSGDLDSASRMLDQ-MTNRGCTPDVVTYSSLI 224
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ ++A GLL M + G PN
Sbjct: 225 DGFCKGGEVERAMGLLDSMLKLGCRPN 251
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 70/327 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
FTP++V++N+ I GLC R+ +A +F ++ C PN +++ L A+
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAI 342
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGM-RPDVVTLNVM 118
L E+ ++ ++ D++ T ++DGLCK G ++D+ + PDV NVM
Sbjct: 343 TLVEQAREKYQIV---DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVM 399
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
D+ K ++++A + + M++R N C +V ++NIL++G
Sbjct: 400 LDSHCKRRQIDKALQIHKQMLER----NCC------------------NVVTWNILVHGL 437
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
C D + DA ++ M+ EG D TY TL +D + K G
Sbjct: 438 CVDDRLSDAETMLLTMVDEGFIPDFVTYGTL-----------------VDAMCKCGKSAA 480
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+++F CV + T + LI GL + A+ +F L DV +N MI
Sbjct: 481 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL--------DVALWNAMI 532
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + G L +++ E+ +EPN
Sbjct: 533 LGYAENGSGDLGLKLFVELIESDVEPN 559
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+VT+N L+ GLC + R+ +A + + P+ +T+ TL + AL LF
Sbjct: 426 NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELF 485
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM---RPDVVTLNVMTDNLSKDGKME 129
EE V C PDVVT + +I GL + + + + DV N M +++G +
Sbjct: 486 EEAVKGG---CVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGD 542
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDG 156
L +I+ DV PN T+ + G
Sbjct: 543 LGLKLFVELIESDVEPNARTFGKEISG 569
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+++ L + P++VT+++LI GL E EA LF KL+V + ++ +
Sbjct: 476 GKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGY 535
Query: 62 --NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDG-------LCKDGFMMDQGMR--- 109
N + L LF E++ +P+ T I G L K + D+ ++
Sbjct: 536 AENGSGDLGLKLFVELIES---DVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGF 592
Query: 110 -PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
PD+ N + D +K G +EEA + M Q
Sbjct: 593 FPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 86/383 (22%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
R+L +PN+VT++ LI GLC GR+LEA +F ++ +P+V+T+++L
Sbjct: 370 RMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429
Query: 71 LFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMR----------------- 109
+ +G++ + PDVV C+ +I+GL + G MMD+ +R
Sbjct: 430 NLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQG-MMDEALRFFFQAVKRGLTLNNYLF 488
Query: 110 -----------------------------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
PDVVT V+ L++ G+++EA L +++
Sbjct: 489 NALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLK 548
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ +P+ Y TL+DGF S G D+ YN+LIN + ++ VE+
Sbjct: 549 KGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVEN 608
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
+ L RE++ G+ D TYNT+ + P++ +T ID
Sbjct: 609 VLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILID 668
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K+G + +AM +FS++ I T +CLIDG K + A++++ ++ + ++
Sbjct: 669 AYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDR-VS 727
Query: 289 PDVVTYNIMIHGFCKEGQHQKAN 311
P++V+Y+I+I G CK+G ++A+
Sbjct: 728 PNIVSYSILIDGLCKKGLMEEAS 750
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 150/339 (44%), Gaps = 52/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P +V N ++KGLC +I A+ F + PN++TF+TL
Sbjct: 236 LVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTL-------------- 281
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
V CK + + M+++G+ PD+V +++ + L + GK+EE N L +
Sbjct: 282 INVYCKE-----LRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMA 336
Query: 139 IQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNV 184
+ R V + ++++MD + +G +V +Y+ILING C++ V
Sbjct: 337 LARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRV 396
Query: 185 EDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTY 226
+A + ++L +G+ TY++L M PD V +
Sbjct: 397 LEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSML 456
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+GL + G + EA++ F L N LIDG ++ R + ++ +LM
Sbjct: 457 INGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMY-ILMGMYK 515
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PDVVTY +++ G ++G+ +A L + + G P+
Sbjct: 516 VIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 52/373 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G AS F ++ R S +PN+VTF++LI C E R+ EA L+ + P+++
Sbjct: 256 IGVASDFFDMMVR---SGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
++ L L EE + F + K DVV ++I+D + G M+
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+G+ P+VVT +++ + L ++G++ EA + ++++ + P+ TY++L+DGF
Sbjct: 373 KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLR 432
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL- 209
KG DV ++LING + +++A+ + + G+ + +N L
Sbjct: 433 DGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492
Query: 210 -----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + V PD YT + GL + G + EA+ +F +
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
LIDG CK IF LMQ+ G+ PD+ YN++I+ F +EG +
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFK-LMQSNGIFPDICIYNVLINMFFREGCVENVLE 611
Query: 313 LLLDMEETGLEPN 325
LL ++ + GLEP+
Sbjct: 612 LLREIIKYGLEPD 624
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 163/373 (43%), Gaps = 51/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L L ++V F+S++ G + +A ++ ++ PNV+T+
Sbjct: 324 GKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTY 383
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF-----MMD 105
+ L L E FG I K P V+T +++IDG CK DGF M+
Sbjct: 384 SILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR 443
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G PDVV +++ + LS+ G M+EA ++R + N +N L+DG + K R
Sbjct: 444 KGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDG-CFRLKRTR 502
Query: 166 H---------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL- 209
DV +Y +L+ G + +++A++L ++L +G D Y TL
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLI 562
Query: 210 -----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N + PD +Y I+ ++ G V +++ I +
Sbjct: 563 DGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLE 622
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
I T N +I G C + A +F +L + P+ +T+ I+I +CK+G+ A
Sbjct: 623 PDIVTYNTMICGYCSLKIFSKAIKLFEVL-KCGRTQPNAITFTILIDAYCKDGRMDDAML 681
Query: 313 LLLDMEETGLEPN 325
+ M E G EPN
Sbjct: 682 IFSSMLERGPEPN 694
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 65/266 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCT-------------------------- 35
GR L ++L F+P+ + + +LI G C
Sbjct: 534 GRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593
Query: 36 ---------EGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI-- 82
EG + L +++ + +P+++T+NT+ +L +F + + F V+
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653
Query: 83 --CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+P+ +T T +ID CKDG M+++G P+++T + + D K E
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDG-----------FAWWSKGCRH---DVYSYNILIN 176
A L E M+ V+PN +Y+ L+DG A+ RH DV +Y ILI
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRAD 202
GYCK + +A+ L ML GI D
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPD 799
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 145/343 (42%), Gaps = 89/343 (25%)
Query: 52 FCCDPNVITFNTLALVALNLFEEMVNEFGVI--------------CKPDVVTCTNIIDGL 97
FC +V+ + + A +F+ MV +FG + P V + ++
Sbjct: 92 FCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVY-SFLLHCY 150
Query: 98 CKDGFMMDQGM-----------------------------RPDVVTLN------------ 116
C++G M+D+ + R DV+ N
Sbjct: 151 CRNG-MVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYE 209
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------- 162
+ ++ K G++E+ +++R + P N ++ G ++
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G ++ +++ LIN YCK+ +++A SL M+ +GI PD +
Sbjct: 270 GPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGI-----------------VPDLVI 312
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+ I+GL++ G + E +FS + + + ++D ++G L A +++ ++
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++P+VVTY+I+I+G C+ G+ +A G+ + + GLEP+
Sbjct: 373 KE-GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 163/358 (45%), Gaps = 54/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++L PN VT+N+LI LC GR A ++F + N T
Sbjct: 351 LGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT 410
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N + A+ LFE+M+ + G + P VVT +I+G G
Sbjct: 411 YNEIIKGLCLGGDIEKAMVLFEKML-KMGPL--PTVVTYNTLINGYLTKGNVNNAARLLD 467
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + G PD T N + SK GK+E A+ + M++ +NPN +Y L+DG +
Sbjct: 468 LMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDG 527
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +V SYN +ING K+ +A +C +M+ +G+ + TY
Sbjct: 528 KVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYT 587
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL +NG A K+F + KC+ + T + LI GLC+
Sbjct: 588 TL-----------------IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ A +I M+ GL PD VT+ +I GF G+ A LL M + G +PN
Sbjct: 631 EGKADEA-EILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPN 687
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 173/403 (42%), Gaps = 86/403 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC EGR+ EA + +++ +P V T+ TL +
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY-TLPI 310
Query: 67 VALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
AL E ++ C+P+V T T +I GL + G M+ +G+
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370
Query: 110 PDVVTLNVMTDNLSKDGK-----------------------------------MEEANCL 134
P+ VT N + + L G+ +E+A L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCK 180
E M++ P TYNTL++G+ GC D ++YN L++G+ K
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+E A +EM+ G+ + +Y L M P+
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I+GL K EA K+ + + + T LIDGLC+ GR + A+ IFH M
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHD-M 609
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P++ TY+ +I+G C+EG+ +A LL +ME GL P+
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 652
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 160/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L +I +P++ T+ SLI G C + A +F ++ CDPN +T+
Sbjct: 212 GKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTY 271
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+TL AL++ EEM+ E G+ +P V T T I LC
Sbjct: 272 STLINGLCNEGRVDEALDMLEEMI-EKGI--EPTVYTYTLPITALCAIEHEEEAIELVAR 328
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G RP+V T + LS+ GK+E A L M++ + PNT TYN L++
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388
Query: 157 -------FAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F W G + +YN +I G C ++E A+ L +ML G TYNT
Sbjct: 389 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N PD Y + G K G + A F +
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ LIDG K G++ IA + M+ G P+V +YN +I+G KE + +A
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKR-MEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 311 NGLLLDMEETGLEPN 325
+ M E GL PN
Sbjct: 568 EKICDKMVEQGLLPN 582
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 152/318 (47%), Gaps = 49/318 (15%)
Query: 39 ILEAAR-LFKKLNVFCCDPNVITFNTLALV-----ALNLFEEMVNE-FGVICKPDVVTCT 91
++E AR L+K++ P+++TFNTL + + E ++++ F PDV T T
Sbjct: 178 MVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYT 237
Query: 92 NIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++I G C++ M+ +G P+ VT + + + L +G+++EA +LE MI++
Sbjct: 238 SLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK 297
Query: 142 DVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ P TY + +GCR +V +Y LI+G + +E A
Sbjct: 298 GIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVA 357
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+ L +ML EG+ + TYN L I+ L G A+K+F +
Sbjct: 358 IGLYHKMLKEGLVPNTVTYNAL-----------------INELCVGGRFSTALKIFHWME 400
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
H + +T N +I GLC G ++ A +F +++ G P VVTYN +I+G+ +G
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM-GPLPTVVTYNTLINGYLTKGNV 459
Query: 308 QKANGLLLDMEETGLEPN 325
A LL M+E G EP+
Sbjct: 460 NNAARLLDLMKENGCEPD 477
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 140/299 (46%), Gaps = 55/299 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G VL ++L P +VT+N+LI G T+G + AARL + C+P+ T+
Sbjct: 422 GDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 481
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A F+EMV E G+ P+ V+ T +IDG KDG
Sbjct: 482 NELVSGFSKWGKLESASFYFQEMV-ECGL--NPNPVSYTALIDGHSKDGKVDIALSLLKR 538
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M + G P+V + N + + LSK+ + EA + + M+++ + PN TY TL+DG
Sbjct: 539 MEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGR 598
Query: 157 --FAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
FA+ + C ++Y+Y+ LI G C++ ++A L +EM +G+ D T+ +
Sbjct: 599 TQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTS 658
Query: 209 L---FMAINNV---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L F+ + + P+ Y+ + GL K +LE K+F + N+
Sbjct: 659 LIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLEE-KIFPLVDNY 716
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G +YS N L+ K VE A +L ++ML+ GI+ T+NTL
Sbjct: 158 GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTL------------- 204
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I+ L K G V EA + S I + + T LI G C+ L +A+ +F ++
Sbjct: 205 ----INILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMV 260
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ G P+ VTY+ +I+G C EG+ +A +L +M E G+EP
Sbjct: 261 KE-GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 301
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 155/350 (44%), Gaps = 74/350 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F +LG IL + P+ TF +LI+GLC EG+I EA +LF K+
Sbjct: 58 LNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMT---------- 107
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
G +PDV+T +I+GLCKD M+ +G+ P
Sbjct: 108 -------------------GEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISP 148
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+ T + + L G +EA L MI R + P+ T+NTL+D
Sbjct: 149 NNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAM 208
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G D +YN LI+G C + DA++L EM+ G D TY LF
Sbjct: 209 GLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILF--- 265
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
D L KN + EAM + I I + ++DG+C+ G L+
Sbjct: 266 --------------DYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEA 311
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A D+F L + GL PDV TY IMI+G C++G +A+ L +M+E +E
Sbjct: 312 ARDLFSKL-SSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIE 360
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ + TLN++ ++ ++ A +L +++ P+T T+ TL+ G K
Sbjct: 40 GIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEA 99
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G + DV +Y LING CKDR + +A+SL +ML++GI
Sbjct: 100 LQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGI------------- 146
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P++ Y++ I GL G EA+++F A+ + K + T N L+D LCK G ++
Sbjct: 147 ----SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQ 202
Query: 273 I---AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I A +F + Q GL PD VTYN +IHG C G+ + A L +M G P+
Sbjct: 203 IMDKAMGLFEEMSQQ-GLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 257
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 111/240 (46%), Gaps = 39/240 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L +L +PN T++SLI GLC G EA RLF + P+ +TFNTL
Sbjct: 137 LFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALC 196
Query: 68 ----------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------G 107
A+ LFEEM + G+I PD VT +I GLC G + D G
Sbjct: 197 KEGMIQIMDKAMGLFEEMSQQ-GLI--PDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 253
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
PD+VT ++ D L K+ ++ EA LL+V+ +++P+ Y+ +MDG
Sbjct: 254 QIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAAR 313
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
SKG DV +Y I+ING C+ + +A L EM I + +T F I
Sbjct: 314 DLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIESYSTFSRNAFKGI 373
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ ++ L+ + ++ +SL ++M S GI + T N L + +
Sbjct: 9 SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCH----------- 57
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L + GF + +G T T LI GLC G++ A +F M G
Sbjct: 58 ---LNRLGFAFSVLGDILKLGYQPSTATFTT---LIRGLCVEGKIGEALQLFDK-MTGEG 110
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV+TY +I+G CK+ Q +A L DM G+ PN
Sbjct: 111 FQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPN 149
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 161/357 (45%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++N++I GLC E R+ +A L ++ C+PN T+ L L EE +
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 79 FGVICKP----DVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
G + + DVV + +I G C G M+++G+ P+VV + + + K
Sbjct: 68 LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWS---------KGCRHDVYS 170
G EA +L M +R + P+ TY ++ DG A + KG +
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVT 187
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
YN+LING CK+ + DA + ML +G R + +YNTL M +
Sbjct: 188 YNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLL 247
Query: 214 ---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
N V PD + T I GL K G + +A++++ + + TC+ LI K G
Sbjct: 248 EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGI 307
Query: 271 LKIA---WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A W H L GL P TY++MI GFCK A GL M+ +GL P
Sbjct: 308 IDKAMELWKRVHKL----GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSP 360
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 173/392 (44%), Gaps = 90/392 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN T+ L+ GLC EGR+ EA RL ++ + +V+ ++TL L
Sbjct: 43 PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+EM+ E G+ P+VV + +I+G CK G M ++G++PDV T M
Sbjct: 103 FDEML-EKGI--SPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGG 159
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L KDG+ +A L ++M ++ P+T TYN L++G KG R +
Sbjct: 160 LCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLE 219
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEG--IRADATTYNTLFMAI---NNVPPDSHV 222
V SYN LI G C + +++A+ L +L +G + D T+NT+ + + +
Sbjct: 220 VVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279
Query: 223 YTTYID--------------GLY-KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
Y T I+ G Y K+G + +AM+++ + V + T + +IDG CK
Sbjct: 280 YDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCK 339
Query: 268 IGRLKIAWDIFHML----------------------------------MQNPGLTPDVVT 293
+ L A +F + M+ PD ++
Sbjct: 340 MHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTIS 399
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+NIMI G K G A LL DM++ GL P+
Sbjct: 400 FNIMIDGTLKAGDIHSAKELLNDMQQMGLTPD 431
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 166/372 (44%), Gaps = 57/372 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G L +L +PN+V ++ LI G C +G EA + + P+V T+ +
Sbjct: 99 GKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIG 158
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A AL+LF+ M + +P VT +I+GLCK+G M+++G
Sbjct: 159 GLCKDGRARKALDLFDLMTEKGE---EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF-------- 157
R +VV+ N + L +GK++EA L +++ V P+ T+NT++ G
Sbjct: 216 KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDK 275
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+G ++++ +ILI Y K ++ A+ L + + G+ +TTY+ +
Sbjct: 276 AVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMID 335
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M I+ + P Y T + L K + +A ++F + C
Sbjct: 336 GFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEP 395
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N +IDG K G + A ++ + MQ GLTPD TY+ I+ K GQ ++A G
Sbjct: 396 DTISFNIMIDGTLKAGDIHSAKELLND-MQQMGLTPDAYTYSSFINRLSKLGQMEEAKGA 454
Query: 314 LLDMEETGLEPN 325
M +G+ P+
Sbjct: 455 FDSMIASGITPD 466
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 52/354 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA L + P+ VT+N LI GLC EG I +A ++F+ + V+++
Sbjct: 164 GRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSY 223
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL + A+ LF ++ E G +PDV+T +I GLCK+G
Sbjct: 224 NTLIMGLCNNGKLDEAMKLFSSLL-EDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDT 282
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+++G ++ T +++ K G +++A L + + + + P++ TY+ ++DGF
Sbjct: 283 MIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHM 342
Query: 158 -----AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+S+ G ++ YN L+ CK+ ++E A L +EM
Sbjct: 343 LNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKE------------ 390
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+N PD+ + IDG K G + A ++ + + T + I+ L K+
Sbjct: 391 -----SNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKL 445
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G+++ A F ++ + G+TPD Y+ +I GF + ++ LL M + G+
Sbjct: 446 GQMEEAKGAFDSMIAS-GITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGV 498
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PD+V+ N + + L K+ ++E+A LL M PN+ TY LMD
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMD-------------- 53
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
G CK+ VE+A+ L EM +G+ D VY+T I G
Sbjct: 54 -------GLCKEGRVEEAMRLLGEMKRKGLEVDVV-----------------VYSTLISG 89
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
G + +F + + +CLI+G CK G + A + H M G+ P
Sbjct: 90 FCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHT-MTERGIQP 148
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV TY MI G CK+G+ +KA L M E G EP+
Sbjct: 149 DVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPS 184
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 40/213 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L R+ +S +P + +N+L+ LC E + +A RLF+++ C+P+ I+FN
Sbjct: 349 LFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNI------ 402
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ G + D+ + +++ M G+ PD T + + LSK G+ME
Sbjct: 403 -----MID--GTLKAGDIHSAKELLND------MQQMGLTPDAYTYSSFINRLSKLGQME 449
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
EA + MI + P+ Y++L+ GF + +E+ ++
Sbjct: 450 EAKGAFDSMIASGITPDNHVYDSLIKGFGL---------------------NDEIEEVIN 488
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
L R+M G+ D N++ + N HV
Sbjct: 489 LLRQMADMGVILDLEITNSILTFLCNSAEHLHV 521
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
N+ PD Y T I+GL K + +A+ + + C T L+DGLCK GR++ A
Sbjct: 5 NILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEA 64
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ GL DVV Y+ +I GFC +G + L +M E G+ PN
Sbjct: 65 MRLLGE-MKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPN 114
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ + PD+V+YN +I+G CKE + +KA LL++ME + EPN
Sbjct: 1 MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPN 44
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 56/351 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L ++L P VT+N+LI LC EGR A +FK + P+ T+N +
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ +F++M+ P+V+T +I G CK G M G++P
Sbjct: 424 LMGDIQKAMVIFDKMLKAGS---SPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKP 480
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW 159
D T + S+ GK+E A L M++ ++PN TY ++DG+ +
Sbjct: 481 DAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540
Query: 160 WS---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
W G +YN++I+G+ K ++ +A + C +M+ +G+ + T
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVIT----------- 589
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YT++IDGL +NG A K+F + + T + LI GLC+ GR + A +
Sbjct: 590 ------YTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-E 642
Query: 277 IFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++L + + G P+V TY ++ G C EG+ +A+ L++ M++ GL+P+
Sbjct: 643 MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 88/405 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC+EGR+ EA + +++ +P V T+ T+ L
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTY-TIPL 314
Query: 67 VAL---NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
V+L E V G + C P++ T T +I GL +DG M+ G+
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
P VT N + + L +G+ E A + + M+ P+T TYN ++ F
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
G +V +YN LI GYCK N+ +A+ L M G++ DA TY L
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + + P+ YT IDG + V +A+ +F + + + +T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Query: 258 CNCL-----------------------------------IDGLCKIGRLKIAWDIFHMLM 282
N + IDGLC+ GR +A+ IFH M
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE-M 613
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKAN--GLLLDMEETGLEPN 325
+ P++ TY+ +I+G C+EG+ + A LL + G EPN
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 69/336 (20%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
++L S P+++TFN++I LC +GR+ EA + + + PN T+ +L L
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
+A +F+ MV + C P+ VT + +I+GLC
Sbjct: 252 NLDLAFAMFDRMVKDG---CDPNSVTYSTLINGLC------------------------- 283
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+G++EEA +LE M+Q+ + P TY + +GC ++
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++ LI+G +D E A+ L +ML++G+ TYN L IN + ++G
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL---INQL---------CVEG 391
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
++ F +F + +H + + +T N +I C +G ++ A IF +++ G +P
Sbjct: 392 RFETAFT-----IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK-AGSSP 445
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V+TYN +I+G+CK+G A LL M+ GL+P+
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 118/288 (40%), Gaps = 50/288 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN VT+ ++I G ++ +A LF K+ P+ T+N + N E N
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
G + K P+V+T T+ IDGLC++G M + P++ T + + L
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLC 633
Query: 124 KDGKMEEANC--LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
++G+ E+A LL + PN TY TL+ G + KG +
Sbjct: 634 QEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
Y L+ G CK+ VE A+++ M + G + + Y L A+
Sbjct: 694 EEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQ 753
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ D V+T +DGL K G +K+ + + C L +T
Sbjct: 754 TMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 186 DAVSLCREM----LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
D V L R+M L+ GIR T+NT+ I+ L K G V EA
Sbjct: 181 DMVDLARDMYIKMLNSGIRPSLLTFNTM-----------------INILCKKGRVQEAKL 223
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ S I + T LI G C+ L +A+ +F ++++ G P+ VTY+ +I+G
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD-GCDPNSVTYSTLINGL 282
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
C EG+ ++A +L +M + G+EP
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEP 305
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P HV I G V + S I + T+ + L+ L K + +A D
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + M N G+ P ++T+N MI+ CK+G+ Q+A ++ + PN
Sbjct: 189 MY-IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 155/338 (45%), Gaps = 62/338 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +PNV+T+++L + A +
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 301
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M +PD+ T ++ G CK+G M+ G++PD++T N + D
Sbjct: 302 FDSMTKRG---LEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 358
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
GKM+EA LL M+ V P+ TY T LINGYC+
Sbjct: 359 CCLAGKMDEATKLLASMVSVGVKPDIVTYGT---------------------LINGYCRV 397
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID------------- 228
++DA++L +EM+S G+ + TYN + + + + Y+
Sbjct: 398 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 457
Query: 229 -----GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
GL KN EA+++F + L T N +I L K GR+ A D+F
Sbjct: 458 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSA 517
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
N GL PDV TY++M ++G ++ + L L MEE G
Sbjct: 518 N-GLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENG 554
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 152/363 (41%), Gaps = 89/363 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR GF LG ++ F + +TF L+KGLC + R +A
Sbjct: 106 GRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDA------------------- 146
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQ---GM 108
+++ + E G C PDV + N++ GLC + M D G
Sbjct: 147 -------MDIVLRRMTELG--CIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS 197
Query: 109 RPDVVTLNVMTDNLSKDG--------KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
PDVV+ N + + K+G M++A +L M++ V P+ TYN+++
Sbjct: 198 PPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL------ 251
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+GYC ++A+ ++M S+G+ + TY++L
Sbjct: 252 ---------------HGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRST 296
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + PD Y T + G K G V+E+ K+F + I T N LI
Sbjct: 297 EARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG C G++ A + M + G+ PD+VTY +I+G+C+ + A L +M +G+
Sbjct: 357 DGCCLAGKMDEATKLLAS-MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGV 415
Query: 323 EPN 325
PN
Sbjct: 416 SPN 418
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 31/188 (16%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V++Y ILI C+ ++ + ++ +G R DA T+ L
Sbjct: 92 VHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVL 151
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK---CVLTIETCNCLIDGL 265
M PD Y + GL EA+++ + + + + + N +++G
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211
Query: 266 CKIG--------RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
K G + A ++ + +++N G+ PD +TYN ++HG+C GQ ++A G L M
Sbjct: 212 FKEGIQTKLTAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 270
Query: 318 EETGLEPN 325
G+EPN
Sbjct: 271 RSDGVEPN 278
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 26/229 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P++VT+ +LI G C R+ +A LFK++ PN+IT+
Sbjct: 363 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 422
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP--- 110
N T A + + G + ++ T I+ GLCK+ + D+ +R
Sbjct: 423 NIILQGLFHTRRTAAAKELYVSITKSGT--QLELSTYNIILHGLCKNN-LTDEALRMFQN 479
Query: 111 --------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ T N+M L K G+M+EA L + P+ TY+ + +
Sbjct: 480 LCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGS 539
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
D ++ NG D + + S+ R++L G A TY LFM
Sbjct: 540 LEELDDLFLSMEENGCSADSRMLN--SIVRKLLQRGDITRAGTY--LFM 584
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R L ++ S +PN++T+N +++GL R A L+ + + T
Sbjct: 397 VSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELST 456
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTN----IIDGLCKDGFMMD--------- 105
+N + L NL +E + F +C D+ T +I L K G M +
Sbjct: 457 YNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHS 516
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ PDV T ++M +NL + G +EE + L M + + ++ N+++
Sbjct: 517 ANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDIT 576
Query: 165 RHDVYSYNI 173
R Y + I
Sbjct: 577 RAGTYLFMI 585
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 141/285 (49%), Gaps = 45/285 (15%)
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTDNLSKDGKMEEAN 132
+P +VT T +++GLC +G MDQ G++P+V T NV+ ++LSK GK EA
Sbjct: 129 EPSIVTFTTLLNGLCMEG-KMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEAL 187
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGY 178
L+ M + PN Y+TL+DG+ SKGC +VY+Y L+NGY
Sbjct: 188 GFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGY 247
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDS 220
CK +E+AV L E L +G+ D T+ T+ ++ + P+
Sbjct: 248 CKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNI 307
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y +DGL K+G + EA +F + + LID LCK G++K ++F
Sbjct: 308 MTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSR 367
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ + GL P+V TY ++ CKEG +A+ L MEE G P+
Sbjct: 368 LI-DEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPD 411
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 143/343 (41%), Gaps = 61/343 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L +L+ PN+ T+N +I L G+ EA K++ C PNV+ +
Sbjct: 146 GKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNY 205
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+TL A ++F+ MV++ C P+V T T++++G CK +
Sbjct: 206 STLIDGYCLRGQMDEARSVFDLMVSKG---CTPNVYTYTSLMNGYCKIERIEEAVQLLDE 262
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G+ PD+VT + L + G+ A L + PN TY L+DG
Sbjct: 263 TLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGL----- 317
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
CK N+E+A +L +EM ++ + Y L
Sbjct: 318 ----------------CKHGNLEEAFALFQEMQRSTVKPNLVIYTIL------------- 348
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
ID L K G + + ++FS + + + T L+ LCK G + A +F M
Sbjct: 349 ----IDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRK-M 403
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G TPD YN++I GF + A L+ +M G +
Sbjct: 404 EEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSAD 446
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 32/201 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L I TPN++T+ L+ GLC G + EA LF+++ PN++ +
Sbjct: 286 GRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIY 345
Query: 62 NTLALVAL----------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
T+ + +L LF +++E G+ KP+V T T ++ LCK+G
Sbjct: 346 -TILIDSLCKCGKIKDGKELFSRLIDE-GL--KPNVYTYTALVGALCKEGLIIEAHKLFR 401
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + G PD NV+ + A L+E M+ R + + T L++ F
Sbjct: 402 KMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAAT-RALLNDFPT-- 458
Query: 162 KGCRHDVYSYNILINGYCKDR 182
+D+ + LI G+C+D
Sbjct: 459 ----NDIPALKTLI-GFCEDH 474
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 172/374 (45%), Gaps = 62/374 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA G F ++ R N V++ +LI GLC G++ EA + ++ C P V T+
Sbjct: 242 RACGVFCVMPR-------RNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYT 294
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------- 103
L L AL+LF EM E G C+P+V T T +ID LCK+G M
Sbjct: 295 VLVCALCESGRELEALSLFGEM-RERG--CEPNVYTYTVLIDYLCKEGRMDEALKMLNEM 351
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+++G+ P VV N + + K G ME+A +L +M + V PN TYN L+ GF
Sbjct: 352 VEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSM 411
Query: 164 CRH--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
R DV +YN LI+G C+ V+ A L R M+ +G D T+N
Sbjct: 412 DRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAF 471
Query: 210 FMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+ + +V + H YT IDG K G + A +F + +C
Sbjct: 472 MVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEEC 531
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T N +IDGL K G+++ A + M + P + TYNI++ KE +AN
Sbjct: 532 LPNSITFNVMIDGLRKEGKVQDAMLLVED-MAKFDVKPTLHTYNILVEEVLKEYDFDRAN 590
Query: 312 GLLLDMEETGLEPN 325
+L + +G +PN
Sbjct: 591 EILNRLISSGYQPN 604
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 161/353 (45%), Gaps = 52/353 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L G + PN+ T+ LI LC EGR+ EA ++ ++ P+V+ F
Sbjct: 304 GRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPF 363
Query: 62 NTL--ALVALNLFEEMVNEFGV-----ICKPDVVTCTNIIDGLCKDGFMMDQGM------ 108
N L + + E+ V G+ +C P+V T +I G C+ G MD+ M
Sbjct: 364 NALIGSYCKRGMMEDAVGVLGLMESKKVC-PNVRTYNELICGFCR-GKSMDRAMALLNKM 421
Query: 109 -----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
PDVVT N + L + G ++ A+ L +MI+ +P+ T+N M
Sbjct: 422 VESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRV 481
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ K + + ++Y LI+GYCK +E A SL + ML+E ++ T+N +
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVM 541
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL K G V +AM + + T+ T N L++ + K
Sbjct: 542 -----------------IDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEY 584
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A +I + L+ + G P+VVTY I +C +G+ ++A +++ ++ G+
Sbjct: 585 DFDRANEILNRLISS-GYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGV 636
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 155/371 (41%), Gaps = 63/371 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
LL +++ S +P++VT+N+LI GLC G + A+RLF+ + P+ TFN +
Sbjct: 414 AMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMV 473
Query: 67 V---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A + E + + K + T +IDG CK G M+ +
Sbjct: 474 CLCRMGRVGEAHQILESLKEKH---VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
P+ +T NVM D L K+GK+++A L+E M + DV P TYN L++
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRAN 590
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
S G + +V +Y I YC +E+A + ++ +EG+ D+ YN L A
Sbjct: 591 EILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAY 650
Query: 214 ------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
P Y+ + L V+E K G++ L +
Sbjct: 651 GCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHL-----VIEKHK---KEGSNPVGLDV 702
Query: 256 ETCNCLIDGLCKIGRLKIA-WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
N +D ++ + M G P++ TY+ +I+G CK G+ A L
Sbjct: 703 SLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLY 762
Query: 315 LDMEETGLEPN 325
M E G+ P+
Sbjct: 763 HHMREGGISPS 773
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 55/319 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP--NVITFNTLAL--VALNLFEEMV 76
PN++T N+++ C G + ARLF + + C+P ++ T+ +L L + E
Sbjct: 187 PNLITLNTMLNSYCKLGN-MAVARLFF-VRILRCEPGPDLFTYTSLVLGYCRNDDVERAC 244
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDG 126
F V+ + + V+ TN+I GLC+ G M + G P V T V+ L + G
Sbjct: 245 GVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESG 304
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ EA L M +R GC +VY+Y +LI+ CK+ +++
Sbjct: 305 RELEALSLFGEMRER---------------------GCEPNVYTYTVLIDYLCKEGRMDE 343
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A+ + EM+ +G+ +N L I K G + +A+ V +
Sbjct: 344 ALKMLNEMVEKGVAPSVVPFNAL-----------------IGSYCKRGMMEDAVGVLGLM 386
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ K + T N LI G C+ + A + + ++++ L+PDVVTYN +IHG C+ G
Sbjct: 387 ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESK-LSPDVVTYNTLIHGLCEVGV 445
Query: 307 HQKANGLLLDMEETGLEPN 325
A+ L M G P+
Sbjct: 446 VDSASRLFRLMIRDGFSPD 464
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 143/356 (40%), Gaps = 68/356 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR +L + N + +LI G C G+I AA LFK++ C PN IT
Sbjct: 478 MGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSIT 537
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
FN + IDGL K+G + D ++P
Sbjct: 538 FNVM-----------------------------IDGLRKEGKVQDAMLLVEDMAKFDVKP 568
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ T N++ + + K+ + AN +L +I PN TY + + +
Sbjct: 569 TLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMV 628
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G D + YN+LIN Y ++ A + R M G TY+ L +
Sbjct: 629 IKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIE 688
Query: 214 -------NNVPPDSHVYTTYIDG---LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
N V D + +D K F + + +F + CV + T + LI+
Sbjct: 689 KHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTV-LFEKMAECGCVPNLNTYSKLIN 747
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
GLCK+GRL +A+ ++H M+ G++P + +N ++ CK G +A LL M E
Sbjct: 748 GLCKVGRLNVAFSLYHH-MREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMME 802
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 30/243 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR---LFKKLNVFCCDPN 57
MG F +L R+ + P+ +T++ L+K L E E + L L D
Sbjct: 653 MGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNT 712
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
I + LFE+M E G C P++ T + +I+GLCK G M + G
Sbjct: 713 DIWSKIDFGITTVLFEKMA-ECG--CVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGG 769
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSK---- 162
+ P + N + + K G EA LL+ M++ + +Y L+ G F +K
Sbjct: 770 ISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAE 829
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G +D ++ +LI+G K V+ L M G R TY+ L +
Sbjct: 830 AVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQEL 889
Query: 214 NNV 216
N
Sbjct: 890 NRA 892
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 168/351 (47%), Gaps = 56/351 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L ++L P VT+N+LI LC EGR A +FK + P+ T+N +
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ +F++M+ P+V+T +I G CK G M G++P
Sbjct: 424 LMGDIQKAMVIFDKMLKAGS---SPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKP 480
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW 159
D T + S+ GK+E A L M++ ++PN TY ++DG+ +
Sbjct: 481 DAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540
Query: 160 WS---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
W G +YN++I+G+ K ++ +A + C +M+ +G+ + T
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVIT----------- 589
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YT++IDGL +NG A K+F + + T + LI GLC+ GR + A +
Sbjct: 590 ------YTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-E 642
Query: 277 IFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++L + + G P+V TY ++ G C EG+ +A+ L++ M++ GL+P+
Sbjct: 643 MYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 88/405 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC+EGR+ EA + +++ +P V T+ T+ L
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTY-TIPL 314
Query: 67 VAL---NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
V+L E V G + C P++ T T +I GL +DG M+ G+
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
P VT N + + L +G+ E A + + M+ P+T TYN ++ F
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
G +V +YN LI GYCK N+ +A+ L M G++ DA TY L
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + + P+ YT IDG + V +A+ +F + + + +T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554
Query: 258 CNCL-----------------------------------IDGLCKIGRLKIAWDIFHMLM 282
N + IDGLC+ GR +A+ IFH M
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHE-M 613
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKAN--GLLLDMEETGLEPN 325
+ P++ TY+ +I+G C+EG+ + A LL + G EPN
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPN 658
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 69/336 (20%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
++L S P+++TFN++I LC +GR+ EA + + + PN T+ +L L
Sbjct: 192 KMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNH 251
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
+A +F+ MV + C P+ VT + +I+GLC
Sbjct: 252 NLDLAFAMFDRMVKDG---CDPNSVTYSTLINGLC------------------------- 283
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+G++EEA +LE M+Q+ + P TY + +GC ++
Sbjct: 284 SEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQ 343
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++ LI+G +D E A+ L +ML++G+ TYN L IN + ++G
Sbjct: 344 TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNAL---INQL---------CVEG 391
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
++ F +F + +H + + +T N +I C +G ++ A IF +++ G +P
Sbjct: 392 RFETAFT-----IFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK-AGSSP 445
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V+TYN +I+G+CK+G A LL M+ GL+P+
Sbjct: 446 NVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPD 481
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 117/288 (40%), Gaps = 50/288 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN VT+ ++I G ++ +A LF K+ P+ T+N + N E N
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
G + K P+V+T T+ IDGLC++G M + P++ T + + L
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLC 633
Query: 124 KDGKMEEANC--LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
++G+ E+A LL + PN TY TL+ G + KG +
Sbjct: 634 QEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
Y L+ G CK+ VE A+++ M + G + + Y L A+
Sbjct: 694 EEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQ 753
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ D +T +DGL K G +K+ + + C L +T
Sbjct: 754 TMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 186 DAVSLCREM----LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
D V L R+M L+ GIR T+NT+ I+ L K G V EA
Sbjct: 181 DMVDLARDMYIKMLNSGIRPSLLTFNTM-----------------INILCKKGRVQEAKL 223
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ S I + T LI G C+ L +A+ +F ++++ G P+ VTY+ +I+G
Sbjct: 224 IMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD-GCDPNSVTYSTLINGL 282
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
C EG+ ++A +L +M + G+EP
Sbjct: 283 CSEGRLEEAMDMLEEMVQKGIEP 305
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P HV I G V + S I + T+ + L+ L K + +A D
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + M N G+ P ++T+N MI+ CK+G+ Q+A ++ + PN
Sbjct: 189 MY-IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 163/348 (46%), Gaps = 56/348 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNLFEEMVNEF 79
+++ C +GR + + LF+++ PNV+ + A + EEMV +
Sbjct: 226 IVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAK- 284
Query: 80 GVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
G+ KP+V T T++I+GLCK G+ + +P+V T VM K+GK+
Sbjct: 285 GL--KPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKL 342
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNIL 174
A LL M+++ + PNT TY TL+ G F +K G + ++Y+YN L
Sbjct: 343 ARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNAL 402
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+G CK +++A + R ++G++ D TY + MA N
Sbjct: 403 IDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGC 462
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD H YTT I + + E+ K+F + V T +T +I G CK+G+ A
Sbjct: 463 HPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALR 522
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+F ++QN G D +TY +I G CKE + ++A L M + L P
Sbjct: 523 VFERMVQN-GCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVP 569
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 144/332 (43%), Gaps = 54/332 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC-DPNVITFNTLALVALNLFEEMVNE 78
T + + G+ T G +L AR F+ L V CC D + + L V M +
Sbjct: 162 TGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTV-------MQGQ 214
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ D TCT I+ C+ G M++ G P+VV D L K +
Sbjct: 215 GFCL---DNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYV 271
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HDVYSYNI 173
++A +LE M+ + + PN T+ +L++G W + R +V++Y +
Sbjct: 272 KQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV 331
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
+I GYCK+ + A L M+ +G+ P+++ YTT I G K
Sbjct: 332 MIGGYCKEGKLARAEMLLGRMVEQGL-----------------APNTNTYTTLISGHCKE 374
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G A ++ + + I T N LIDGLCK G+++ A+ + M N GL D VT
Sbjct: 375 GSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRM-ANNQGLQLDKVT 433
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y +MI CK+G A L M E G P+
Sbjct: 434 YTVMITEHCKQGHITYALDLFNRMAENGCHPD 465
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +LLGR++ PN T+ +LI G C EG A L K+ PN+ T+
Sbjct: 340 GKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTY 399
Query: 62 NTL--ALVALNLFEE------MVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
N L L +E M N G+ + D VT T +I CK G M
Sbjct: 400 NALIDGLCKKGKIQEAYKVLRMANNQGL--QLDKVTYTVMITEHCKQGHITYALDLFNRM 457
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+ G PD+ T + + +MEE+ L + + ++ P TY +++ G+ K
Sbjct: 458 AENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKS 517
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
GC+ D +Y LI+G CK+ +E+A +L ML + +
Sbjct: 518 TSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRL 567
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 66/267 (24%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR---------------------- 44
F L+ ++ F PN+ T+N+LI GLC +G+I EA +
Sbjct: 380 AFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMIT 439
Query: 45 -------------LFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE--------FGVIC 83
LF ++ C P++ T+ TL +A + + E +
Sbjct: 440 EHCKQGHITYALDLFNRMAENGCHPDIHTYTTL--IARYCQQRQMEESQKLFDKCLAIEL 497
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
P T T++I G CK G M+ G + D +T + L K+ ++EEA
Sbjct: 498 VPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARA 557
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-----------RHDVYSYNILINGYCKDR 182
L E M+ + + P T TL + K R ++ N+L+
Sbjct: 558 LYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRKNHTVNVLVRKLSAIG 617
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTL 209
+VEDA ++ L + D Y +
Sbjct: 618 HVEDASLFLKKALDVDLAVDRLAYTSF 644
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
T T F+ ++P + + G + EA + + +H +ET N ++
Sbjct: 99 TAATTFVDRGSLPMAHEAMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETANWVLRA 158
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G A +F ++ GL PD ++ +I G C++G+ ++ + LL M+ G
Sbjct: 159 GLDTGSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGF 216
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 22/156 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+++ + R++ + + +T+ +LI GLC E R+ EA L++ + P +T
Sbjct: 514 VGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVT 573
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
TLA FE E V+ +I+D L K R T+NV+
Sbjct: 574 PVTLA------FEYCRREKAVV-------AVSILDRLDK---------RRKNHTVNVLVR 611
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
LS G +E+A+ L+ + D+ + Y + ++
Sbjct: 612 KLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFINS 647
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 173/393 (44%), Gaps = 72/393 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F +L +IL + P+ +T +LIKGLC G++ EA + N ++
Sbjct: 96 LGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVS 155
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ L AL + ++ G + +VV + IID LCK+
Sbjct: 156 YGILINGLCKMGETRAALQVLRKID---GKLVNTNVVMYSTIIDSLCKEKLVTEAYELYS 212
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----G 156
M+ + + PDVVT + + G+ +EA L M+ ++NP+ CT+N L+D G
Sbjct: 213 QMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEG 272
Query: 157 FAWWSKG--------------CRH------------DVYSYNILINGYCKDRNVEDAVSL 190
+K +H DV+SY I+I CK + V++A+SL
Sbjct: 273 STKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSL 332
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
EM +GI D TY++L M P D YT+++ L K
Sbjct: 333 FNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCK 392
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
N V +A+ + I + I T N LIDGLCK GR + A IF L+ G V
Sbjct: 393 NHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIK-GYKVTVW 451
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYNIMI+G C EG +A LL ME+ G P+
Sbjct: 452 TYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD 484
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 159/337 (47%), Gaps = 42/337 (12%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
+ + L ++++ +P++VTF++LI G C G+ EA LF ++ + +P+V TFN
Sbjct: 204 VTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNI 263
Query: 64 L--ALVALNLFEEMVNEFGVICKP--DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
L AL +E N V+ K V ++ + + K + + PDV + ++
Sbjct: 264 LVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGK------RRVTPDVHSYTIII 317
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCR 165
L K ++EA L M + + P+ TY++L+DG AW ++G
Sbjct: 318 KRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQP 377
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV +Y ++ CK+ V+ AV+L +++ +GI+ + TYN L
Sbjct: 378 ADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNIL---------------- 421
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL K G A +F + +T+ T N +I+GLC G A + M++
Sbjct: 422 -IDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEK-MEDN 479
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G TPDVVTY +I K ++ KA LL +M GL
Sbjct: 480 GCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 47/260 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILE-----------------AA 43
+G+ F L ++++ P++ TFN L+ LC EG E A
Sbjct: 236 VGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAK 295
Query: 44 RLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI-CK---PDVVTCTNIIDGL 97
+F + P+V ++ + L + + +E ++ F + CK PD VT +++IDGL
Sbjct: 296 HVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGL 355
Query: 98 CKDGF------MMDQ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
CK ++DQ G DV+T L K+ ++++A L++ + + + PN
Sbjct: 356 CKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNI 415
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TYN L+DG KG + V++YNI+ING C + ++A++L +
Sbjct: 416 NTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEK 475
Query: 194 MLSEGIRADATTYNTLFMAI 213
M G D TY T+ A+
Sbjct: 476 MEDNGCTPDVVTYETIIRAL 495
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 49/352 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
P+ TF +L++G EG I A R+ ++ C +T N L L E+ +
Sbjct: 121 APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALG 180
Query: 77 ---NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E +PD +T ++GLC++ M+ +G PDV T N++ + L
Sbjct: 181 YIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC 240
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K+G++EEA +L M+ R P+ T+NTL+ + KG DVY
Sbjct: 241 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY 300
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++NILIN CK + A+ L EM + G D TYNTL M
Sbjct: 301 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 360
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P + Y T IDGL K + EA +VF + T N LIDGLCK ++
Sbjct: 361 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 420
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A+++ + ++ + GL P+ +TYN ++ +CK+G +KA +L M G E
Sbjct: 421 DDAFELINQMI-SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 471
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 161/353 (45%), Gaps = 50/353 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N ++ LC G++ EA + ++ C P++ TFNTL AL N EE ++
Sbjct: 227 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 286
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ PDV T +I+ LCK G M + G PD VT N + DNL
Sbjct: 287 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 346
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
GK+ +A LL+ M +T TYNT++DG + G + +
Sbjct: 347 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 406
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
+N LI+G CKD+ ++DA L +M+SEG++ + TYN++ M
Sbjct: 407 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 466
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N D Y T I+GL K G A+KV + T + N ++ L + ++
Sbjct: 467 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 526
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEP 324
A +F M G PD +TY I+ G C+ G ++A +L+M + G P
Sbjct: 527 DALSLFRE-MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 578
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 154/357 (43%), Gaps = 54/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + + F P+ +T+N+ + GLC + A ++ + DP+V T
Sbjct: 172 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 231
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N + A + +MV+ C PD+ T +I LC + +
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRG---CLPDITTFNTLIAALCTGNRLEEALDLAR 288
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ PDV T N++ + L K G A L E M P+ TYNTL+D
Sbjct: 289 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 348
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +YN +I+G CK +E+A + +M +GI +A T+N
Sbjct: 349 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 408
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL K+ + +A ++ + + + T N ++ CK
Sbjct: 409 TL-----------------IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 451
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G +K A DI + N G DVVTY +I+G CK G+ Q A +L M G+ P
Sbjct: 452 QGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 507
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ V +N L+ L ++ ++ ++ P+V+TFNTL A+ +
Sbjct: 53 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 112
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + GV PD T T ++ G ++G M++ G VT+NV+ +
Sbjct: 113 EEMSSR-GV--APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 169
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G++E+A ++ I P+ TYNT ++G +G DV
Sbjct: 170 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 229
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
++YNI++N CK+ +E+A + +M+ G D TT+NTL A
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 289
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ V PD + + I+ L K G A+++F + N C T N LID LC +G+
Sbjct: 290 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 349
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M++ G +TYN +I G CK+ + ++A + M+ G+ N
Sbjct: 350 LGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 65/231 (28%)
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
+ +T YN L++ SK G + DV ++N L+ C+ V AV
Sbjct: 50 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 109
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ EM S G V PD +TT + G + G + A++V + +
Sbjct: 110 LMLEEMSSRG-----------------VAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 152
Query: 249 HKCVLTIETCNCLIDGLCKIGRL------------------KIAWDIF-----------H 279
C T T N LI+G CK+GR+ +I ++ F H
Sbjct: 153 MGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGH 212
Query: 280 ML-----MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L M G PDV TYNI+++ CK GQ ++A G+L M + G P+
Sbjct: 213 ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 263
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 39/161 (24%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L+ +++ PN +T+NS++ C +G I +AA + + +
Sbjct: 423 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT---------------- 466
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
N F V DVVT +I+GLCK G M +GMRP N
Sbjct: 467 ---------ANGFEV----DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 513
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +L + + +A L M + P+ TY + G
Sbjct: 514 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 554
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 176/375 (46%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + F +L ++ + PN + +++LI+GLC G++ A++L K++ P+ T+
Sbjct: 362 GKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTY 421
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A L EM N G++ P+V + +I+GLC++G
Sbjct: 422 NPLMQGHFQQHDKDGAFELLNEMRNS-GIL--PNVYSYGIMINGLCQNGESKEAGNLLEE 478
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--- 159
M+ +G++P+ + SK+G + A LE M + +V+P+ YN+L+ G +
Sbjct: 479 MISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGR 538
Query: 160 -----------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G D ++Y+ LI+GYCK N+E A L R+ML+ G++ +A TY
Sbjct: 539 MEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTD 598
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD+H+Y I L ++ + A V + + +
Sbjct: 599 LLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 658
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + + LI GLCKI ++ A + M GL P +V YN +I GFC+ G +A
Sbjct: 659 LVPDLHIYSSLISGLCKIADMEKAVGLLDE-MAKEGLEPGIVCYNALIDGFCRSGDISRA 717
Query: 311 NGLLLDMEETGLEPN 325
+ + GL PN
Sbjct: 718 RNVFDSILAKGLVPN 732
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 161/334 (48%), Gaps = 48/334 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N VT+N +I GLC G + EA +++ + P+ T+ L L + ++
Sbjct: 277 NEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALL 336
Query: 77 NEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+E KP++V ++DG K+G M+ G++P+ + + + L K
Sbjct: 337 DEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKI 396
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSK-------------GCRHDVYSY 171
G++ A+ LL+ MI+ + P+T TYN LM G F K G +VYSY
Sbjct: 397 GQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSY 456
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
I+ING C++ ++A +L EM+SEG++ P++ +Y I G
Sbjct: 457 GIMINGLCQNGESKEAGNLLEEMISEGLK-----------------PNAFMYAPLIIGHS 499
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G + A + + + N LI GL +GR++ A + ++ +Q GL PD
Sbjct: 500 KEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEE-YYAQVQKRGLVPDE 558
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+ +IHG+CK G +KA+ LL M +GL+PN
Sbjct: 559 FTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPN 592
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 156/405 (38%), Gaps = 89/405 (21%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G F LL + S PN+ ++ +I GLC G EA L +++ PN + L
Sbjct: 436 GAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495
Query: 66 L---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------Q 106
+ +A E+M PD+ ++I GL G M + +
Sbjct: 496 IGHSKEGNISLACEALEKMTK---ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKR 552
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ PD T + + K G +E+A+ LL M+ + PN TY L++G+
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKV 612
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+ G + D + Y I+I + N+E A + E+ G+ D Y++L
Sbjct: 613 SSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISG 672
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
MA + P Y IDG ++G + A VF +I V
Sbjct: 673 LCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPN 732
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM----------------- 297
T LIDG CK G + A+D++ ++ G+ PD YN++
Sbjct: 733 CVTYTALIDGNCKNGDITDAFDLYKEMLDR-GIAPDAFVYNVLATGCSDAADLEQALFLT 791
Query: 298 -----------------IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+HGFCK G+ Q+ LL M + + PN
Sbjct: 792 EEMFNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPN 836
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 73/277 (26%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
GFM G+ PDV T + + K + A + E M +RD
Sbjct: 232 GFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRD------------------ 273
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
C + +YN++I+G C+ VE+A EM+ G+ DA TY L
Sbjct: 274 ---CAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLK 330
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M+ + + P+ VY T +DG K G EA + + + + LI
Sbjct: 331 EAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLI 390
Query: 263 DGLCKIGRLKIAWDI--------------------------------FHML--MQNPGLT 288
GLCKIG+L A + F +L M+N G+
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGIL 450
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+V +Y IMI+G C+ G+ ++A LL +M GL+PN
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPN 487
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 49/349 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ P+ T++ LI G C G + +A +L +++ PN T
Sbjct: 536 VGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADT 595
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKD-----GFMM----- 104
+ L N +E+ + + G KPD +I L + FM+
Sbjct: 596 YTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 655
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
G+ PD+ + + L K ME+A LL+ M + + P YN L+DGF
Sbjct: 656 KNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDIS 715
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ +KG + +Y LI+G CK+ ++ DA L +EML GI DA YN L
Sbjct: 716 RARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLA 775
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
++ D + ++ G+ + N L+ G CK G+
Sbjct: 776 TGCSDA-ADLEQALFLTEEMFNRGYA-----------------NVSLFNTLVHGFCKRGK 817
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
L+ + H++M + P+ T ++ F K G+ +A+ + ++++
Sbjct: 818 LQETEKLLHVMMDRE-IVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
IL PN VT+ +LI G C G I +A L+K++ P+ +N LA
Sbjct: 724 ILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAAD 783
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
AL L EEM N +V ++ G CK G MMD+ + P+ T
Sbjct: 784 LEQALFLTEEMFNR----GYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQT 839
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+ + K GK+ EA+ + + Q+ + + +L+
Sbjct: 840 VEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATDRFSLL 879
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 36/143 (25%)
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P + V +D K G V A +V + + T CN L+ L + +++ W +
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230
Query: 278 FHMLMQNPGLTPDV-----------------------------------VTYNIMIHGFC 302
M+ G+ PDV VTYN+MI G C
Sbjct: 231 -KGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLC 289
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
+ G ++A G +M + GL P+
Sbjct: 290 RSGAVEEAFGFKEEMVDYGLSPD 312
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 165/385 (42%), Gaps = 97/385 (25%)
Query: 12 GRILMSCFTPNMVTFNSL-----------------------------------IKGLCTE 36
+I+ + P+ T+ SL I GLC
Sbjct: 218 SKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEA 277
Query: 37 GRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEMVNEFGVICKPDV 87
GRI EA +LF + C P V T+ L + ALNLF EM E G C+P+V
Sbjct: 278 GRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM-KEKG--CEPNV 334
Query: 88 VTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
T T +IDGLCK+ M ++G+ P VVT N + D K+G +++A +L++
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
M PNT TYN LI G CK R V A++L +ML
Sbjct: 395 MESNSCGPNTRTYNE---------------------LICGLCKKRKVHKAMALLNKMLER 433
Query: 198 GIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ TYN+L M N + PD Y+ +ID L K G V EA
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEA 493
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+F ++ LIDG CK+G++ +A+ + ++ N P+ TYN++I
Sbjct: 494 GTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERML-NDACLPNSYTYNVLIE 552
Query: 300 GFCKEGQHQKANGLLLDMEETGLEP 324
G CKE + ++A+ L+ M G++P
Sbjct: 553 GLCKEKKMKEASSLVAKMLTMGVKP 577
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/409 (24%), Positives = 165/409 (40%), Gaps = 108/409 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++VT+N+LI G C EG I +A + + C PN T+N L A+ L
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+M+ P ++T ++I G CK M + G+ PD T +V D
Sbjct: 427 LNKMLER---KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K+G++EEA L + + + V N Y L+DG+ K C +
Sbjct: 484 LCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPN 543
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
Y+YN+LI G CK++ +++A SL +ML+ G++ TY L
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M PD YT ++ + G + E V + + + + T LIDG ++G
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663
Query: 270 -----------------------------------RLK------------------IAWD 276
R+K IA
Sbjct: 664 LTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALK 723
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F ++++ G T DV Y +I GFC++ + ++A GL+ M+E G+ P+
Sbjct: 724 LFEKMVEH-GCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPS 771
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 144/323 (44%), Gaps = 55/323 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL------NLF 72
+PN+ TFN+++ G C G ++EA K+ P+ T+ +L L N +
Sbjct: 190 ISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAY 249
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
E + C+ + V+ TN+I GLC+ G M + P V T V+ L
Sbjct: 250 EVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYAL 309
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
S G+ EA L M + KGC +V++Y +LI+G CK+
Sbjct: 310 SGSGRKVEALNLFNEMKE---------------------KGCEPNVHTYTVLIDGLCKEN 348
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+++A + EM +G+ TYN L IDG K G + +A ++
Sbjct: 349 KMDEARKMLSEMSEKGLIPSVVTYNAL-----------------IDGYCKEGMIDDAFEI 391
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ ++ C T N LI GLCK ++ A + + +++ L+P ++TYN +IHG C
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK-LSPSLITYNSLIHGQC 450
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K + A LL M E GL P+
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPD 473
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 157/379 (41%), Gaps = 78/379 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + LL R+L PN T+N LI+GLC E ++ EA+ L K+ P V+T
Sbjct: 522 VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVT 581
Query: 61 FNTLALV---------ALNLFEEMV----------------------------------N 77
+ L AL +F MV N
Sbjct: 582 YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMN 641
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
E G++ PD+VT T +IDG + G M+D G +P + ++++ NLS + +
Sbjct: 642 EEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENR 699
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF-AWWSKGCRHDVYSYNILINGYCKDRNVED 186
M+E + + D NT Y + F GC DV Y LI G+C+ +E+
Sbjct: 700 MKETRSEIGI----DSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEE 755
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A L M G+ P +Y + +D K G EA+++ A+
Sbjct: 756 AQGLVHHMKERGMS-----------------PSEDIYNSLLDCCCKLGVYAEAVRLVDAM 798
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ + +E+ L+ GL G + A +FH L+ + G D V + ++I G K
Sbjct: 799 VENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL-SCGYNYDEVAWKVLIDGLLKRDL 857
Query: 307 HQKANGLLLDMEETGLEPN 325
+ + L+ MEE G +PN
Sbjct: 858 VDECSELIDIMEEKGCQPN 876
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 55/333 (16%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
S+IK C+ +L +F+K+N F P + +NT+ L++L+ F +++E +
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI-LMSLSKFL-LIDEMKTVYL 183
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
+++ + P++ T N M + K G + EA ++Q ++
Sbjct: 184 E-----------------LLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLH 226
Query: 145 PNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
P+T TY +L+ G KGC+ + SY LI+G C+ + +A+ L
Sbjct: 227 PDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286
Query: 191 CREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYK 232
+M + TY L A++ P+ H YT IDGL K
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ EA K+ S + + ++ T N LIDG CK G + A++I LM++ P+
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILD-LMESNSCGPNTR 405
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN +I G CK+ + KA LL M E L P+
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPS 438
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 44/212 (20%)
Query: 151 NTLMDGFAWWS--KGCRHDVYSYNILINGYCKDR-----------------NVED---AV 188
T + F W + G +H+V+SY+ ++N + R ++ED +
Sbjct: 82 QTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVL 141
Query: 189 SLCREMLSEG---IRADATTYNTLFMAI------------------NNVPPDSHVYTTYI 227
+ R+M ++G + YNT+ M++ N + P+ + + +
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMV 201
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+G K G V+EA S I T LI G C+ + A+++F ++M G
Sbjct: 202 NGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVF-LIMPQKGC 260
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ V+Y +IHG C+ G+ +A L DM E
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTE 292
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 35/214 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ + LIK L E R+ E +V N + + +AL LFE+MV E G
Sbjct: 682 PSLYIVSILIKNLSHENRMKETRSEIGIDSV----SNTLEYE----IALKLFEKMV-EHG 732
Query: 81 VICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
C DV +I G C+ M ++GM P N + D K G E
Sbjct: 733 --CTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE 790
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L++ M++ + P +Y L+ G S G +D ++ +LI+
Sbjct: 791 AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLID 850
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G K V++ L M +G + + TY+ L
Sbjct: 851 GLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLI 884
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
T ++ + +LI G C + R+ EA L + P+ +N+L A+
Sbjct: 734 TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVR 793
Query: 71 LFEEMVNE--FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP-----DVVTLNVMTDNLS 123
L + MV ++ ++ C I+G + + G+ D V V+ D L
Sbjct: 794 LVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL 853
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
K ++E + L+++M ++ PN TY+ L++G
Sbjct: 854 KRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 168/357 (47%), Gaps = 56/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ +N++I G C RI A + ++ P+V+T N + +AL +
Sbjct: 42 PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEE++ + CKP ++T T +I+ +G M+ +G+ PD T NV+T
Sbjct: 102 FEELLKDNN--CKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRG 159
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAW----WSKGCRHD 167
L K+GK++ A + + R P+ TYN L+ +G W +S+GC +
Sbjct: 160 LCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPN 219
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
V +Y+ILI+ C+D +E++V+L + M +G+ DA Y+ L A
Sbjct: 220 VVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLD 279
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ PD Y T + L KNG A+++F + C + + N ++ L G
Sbjct: 280 CMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSG 339
Query: 270 -RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + I ML + G+ PDV+TYN +I C++G +A GLL DM +PN
Sbjct: 340 DRYRALGMISQMLSK--GIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPN 394
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 48/331 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL +L P+ T+N + +GLC EG++ A + LN C P+VIT+N L L
Sbjct: 137 LLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALL 196
Query: 70 NL-----FEEMVNE-FGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
N E+ ++E F C+P+VVT + +I LC+DG M ++G+ PD
Sbjct: 197 NQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAY 256
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWW 160
+ + ++GK++ A L+ MI P+ YNT+M F
Sbjct: 257 CYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKL 316
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+ GC +V SYN +++ + A+ + +MLS+GI D TYN+L
Sbjct: 317 DEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSL---------- 366
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I L ++G V EA+ + + + + + I + ++ GLCK R+ A ++
Sbjct: 367 -------ISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLA 419
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+++N G P+ TY ++I G G +A
Sbjct: 420 AMIEN-GCQPNETTYTLLIEGIGFSGSRTQA 449
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 45/270 (16%)
Query: 84 KPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+PDV+ CT +I G G + G +PDV N + K ++E A
Sbjct: 7 QPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKT 65
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNILINGY 178
+L+ M ++ +P+ T+N ++ F K C+ + +Y ILI Y
Sbjct: 66 VLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAY 125
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDS 220
+ +++A+ L EMLS G+ D TYN + + PD
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDV 185
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y + L G E K S I + C + T + LI LC+ G+++ + ++
Sbjct: 186 ITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK- 244
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+M+ GLTPD Y+ +I FC+EG+ A
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCREGKLDMA 274
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 18/165 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+K + DV LI G+ RN++ A + + G PD
Sbjct: 3 AKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG------------------KPDV 44
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y I G K + A V + + T N +I C G++ +A +F
Sbjct: 45 FAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEE 104
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+++ P ++TY I+I + EG +A LL +M GLEP+
Sbjct: 105 LLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPD 149
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 159/341 (46%), Gaps = 60/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72
P+++T+NSLI G C G + EA LF L P+V+T+N L L F
Sbjct: 370 PDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRF 429
Query: 73 EEMVNEFGVICKPDVVTCTNIIDG--------LCKDGF--MMDQGMRPDVVTLNVMTDNL 122
++ + E G C+PDV T T +++G + ++ F M+ +G++PD N
Sbjct: 430 KQEMVEQG--CQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAE 487
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
G EA L EVMI R ++ +T TYN I ++G CK
Sbjct: 488 LILGSTSEAFQLTEVMISRGISSDTVTYN---------------------IFLDGLCKSG 526
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
N++DA L +M+S+G++ D TY L M ++ +PP + YT
Sbjct: 527 NLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYT 586
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+I + G + A F + T N LI LC++GR +A+ FH +++
Sbjct: 587 VFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLER 646
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL+P+ TY ++I G CKEG ++A L +M + G+ P+
Sbjct: 647 -GLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPD 686
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC--CDPNVITFNTL--ALVALNLFE--- 73
P++VT+N+L+ EGR+ +AA+L +++ C P+ +T+N + L E
Sbjct: 229 PSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAA 288
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++V+ + K T +I G G M ++G+ P VVT N + +
Sbjct: 289 QLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMF 348
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHDVY 169
+ G +E A M + P+ TYN+L++G+ A W G V
Sbjct: 349 RSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVL 408
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YNIL++GYC+ ++E+A +EM+ +G + D +TY L M
Sbjct: 409 TYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEM 468
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD Y T I G EA ++ + + T N +DGLCK G L
Sbjct: 469 LSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNL 528
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A+ + M M + GL PD +TY +IH C+ G+ ++A + M +GL P+
Sbjct: 529 KDAY-VLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPS 581
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 37/231 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L ++ + + VT+N + GLC G + +A L+ K+ P+ IT
Sbjct: 490 LGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCIT 549
Query: 61 FNTL--ALVALNLFEEMVNEF-GVICK---PDVVTCTNIIDGLCKDG----------FMM 104
+ L A E + F G++ P VT T I C+ G M+
Sbjct: 550 YTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKML 609
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
++G+RP+ VT NV+ L + G+ A M++R ++PN
Sbjct: 610 EEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNK----------------- 652
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
Y+Y +LI+G CK+ N E+A+ L EM GI D T+N LF +
Sbjct: 653 ----YTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGFDE 699
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 44/243 (18%)
Query: 85 PDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
P TC+ LC F M G+ P + N++ L + + ++ + M+Q
Sbjct: 171 PAPSTCST----LCLAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLG 226
Query: 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ P+ TYNTL+D F ++ V+ A L REM +
Sbjct: 227 IEPSIVTYNTLLDSF---------------------FREGRVDQAAKLLREM-------E 258
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
A L P Y I+GL + G + +A ++ + K T N LI
Sbjct: 259 ARPGGCL--------PSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAF-TFNPLI 309
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G G ++ A + M+N G+ P VVTYN +IHG + G + A ++M GL
Sbjct: 310 TGYFARGSVEKA-GALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGL 368
Query: 323 EPN 325
P+
Sbjct: 369 LPD 371
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 167/369 (45%), Gaps = 49/369 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L R+L P+++T+ LI+ C + + A +L ++ C P+V+T+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
N L + +E + + C+P+V+T I+ +C G MD
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G P VVT N++ + L + G + A +LE M Q PN+ +YN L+ GF
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR 397
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
S+GC D+ +YN ++ CKD VEDAV + ++ S+G TYNT+
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M ++ PD+ Y++ + GL + G V EA+K F
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N ++ GLCK + A D F + M N G P+ +Y I+I G EG ++A L
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAID-FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALEL 576
Query: 314 LLDMEETGL 322
L ++ GL
Sbjct: 577 LNELCNKGL 585
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 170/357 (47%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++VT+N++++ LC G++ +A + ++ C P+VIT+ L A+
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM + C PDVVT +++G+CK+G M G +P+V+T N++
Sbjct: 261 LLDEMRDRG---CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ G A GC+
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+ SYN L++G+CK++ ++ A+ M+S G D TYNT+ A+
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P Y T IDGL K G +A+K+ + T + L+ GL +
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A FH + G+ P+ VT+N ++ G CK Q +A L+ M G +PN
Sbjct: 498 GKVDEAIKFFHEF-ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPN 553
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 169/404 (41%), Gaps = 81/404 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ +LI+G C G+ +AA++ + L P+VIT+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 62 NTLALV---------ALNLFEEMVNEFGVI-----------------------------C 83
N + AL++ + M V+ C
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC 235
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
PDV+T T +I+ C+D M D+G PDVVT NV+ + + K+G+++EA
Sbjct: 236 YPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVYSYNILINGYC 179
L M PN T+N ++ W KG V ++NILIN C
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+ + A+ + +M G + ++ +YN L M PD
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T + L K+G V +A+++ + + + C + T N +IDGL K G+ A +
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE- 474
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ L PD +TY+ ++ G +EG+ +A + E G+ PN
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+ G++EE LE M+ P+ TL+ GF K G DV
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN++I+GYCK + +A+S+ M +V PD Y T +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM--------------------SVSPDVVTYNTILRS 213
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L +G + +AM+V + C + T LI+ C+ + A + M++ G TP
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE-MRDRGCTP 272
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYN++++G CKEG+ +A L DM +G +PN
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPN 308
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 166/334 (49%), Gaps = 37/334 (11%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN+ T+N +++GLC E ++ EA ++ +++ V P+V+T+N+ L + +E
Sbjct: 144 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARK 203
Query: 78 EFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDG 126
+ PDVV+ T +I+GLCK G M ++G PDVVT + + D K G
Sbjct: 204 FLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGG 263
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++E A LL+ M++ PN YN+L+ +G DV SYN
Sbjct: 264 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 323
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
I+G CK V+ A ++ M+ G +A++Y+ L + D +YT +DGL K
Sbjct: 324 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIV-------DILLYTVLLDGLCK 376
Query: 233 NGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G EA +FS + + K C + N ++D CK ++ A I +++ +V
Sbjct: 377 GGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN--CCNV 434
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VT+NI++HG C + + A +LL M + G P+
Sbjct: 435 VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPD 468
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 151/335 (45%), Gaps = 51/335 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ TF L++GLC ++ +A +L ++ C P+ +N L A
Sbjct: 40 PDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 99
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDN 121
EMV C P VVT TNI+DGLCK D M D+G P++ T NV+ +
Sbjct: 100 LAEMVKNH---CLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEG 156
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------GCRHDVYS 170
L ++ K++EA +LE M R P+ TYN+ + G + DV S
Sbjct: 157 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVS 216
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING CK +++ A + M + G D TY++L IDG
Sbjct: 217 YTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSL-----------------IDGF 259
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G V AM + ++ C + N L+ L ++G + A D+ + M+ G TPD
Sbjct: 260 CKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML-VEMERRGFTPD 318
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV+YN I G CK + +KA + M E G PN
Sbjct: 319 VVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPN 353
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 139/302 (46%), Gaps = 57/302 (18%)
Query: 57 NVITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD------- 100
NV T+N L L A +F+EM+++ C+PD T ++ GLC+
Sbjct: 6 NVFTYNKLLLQLTREHRHDKASAVFQEMIDKS---CQPDAFTFAILLRGLCRSNQLEKAR 62
Query: 101 ---GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G M + G PD N + SK +A L M++ P TY ++DG
Sbjct: 63 KLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGL 122
Query: 158 --------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
KGC ++Y+YN+++ G C++R +++A ++ML E
Sbjct: 123 CKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEA----KKMLEE------ 172
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
MA+ PD Y ++I GL K V EA K + + V++ T +I+
Sbjct: 173 -------MAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTT---VIN 222
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK G L A + M N G TPDVVTY+ +I GFCK G+ ++A GLL M + G
Sbjct: 223 GLCKSGDLDSASRMLDH-MSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 281
Query: 324 PN 325
PN
Sbjct: 282 PN 283
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 136/313 (43%), Gaps = 61/313 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF------E 73
TP++VT++SLI G C G + A L + C PN++ +N+L L AL+ E
Sbjct: 246 TPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL-LGALHRLGHIGKAE 304
Query: 74 EMVNEFGVI-CKPDVVTCTNIIDGLCKD----------GFMMDQGMRP----------DV 112
+M+ E PDVV+ IDGLCK M+++G P D+
Sbjct: 305 DMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDI 364
Query: 113 VTLNVMTDNLSKDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGF-------------- 157
+ V+ D L K G+ +EA L +V+ ++ P+ YN ++D
Sbjct: 365 LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHK 424
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
K C +V ++NIL++G C D + DA ++ M+ EG D TY TL
Sbjct: 425 QMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTL-------- 475
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+D + K G A+++F CV + T + LI GL + A+ +
Sbjct: 476 ---------VDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL 526
Query: 278 FHMLMQNPGLTPD 290
F L++ + D
Sbjct: 527 FTKLVERRWVPDD 539
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVP-- 217
G H+V++YN L+ ++ + A ++ +EM+ + + DA T+ L + N +
Sbjct: 2 GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61
Query: 218 -------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
PD +Y I G K +A K + + + C+ T+ T ++DG
Sbjct: 62 RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDG 121
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK R + A + M++ G +P++ TYN+++ G C+E + +A +L +M G P
Sbjct: 122 LCKAERTRDAVKLLDE-MRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFP 180
Query: 325 N 325
+
Sbjct: 181 D 181
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 115/272 (42%), Gaps = 51/272 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+A V + R FTP++V++N+ I GLC R+ +A +F ++ C PN +
Sbjct: 300 IGKAEDMLVEMER---RGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASS 356
Query: 61 FNTLAL-------------------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
++ L + A LF ++++E IC+PDV ++D CK
Sbjct: 357 YSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE--KICEPDVFFYNVMLDSHCKRR 414
Query: 102 FMMDQGMRP----------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
+D+ ++ +VVT N++ L D ++ +A +L M+ P+ TY
Sbjct: 415 -QIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 473
Query: 152 TLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
TL+D K GC DV +Y+ LI G + E+A L +++
Sbjct: 474 TLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVER 533
Query: 198 GIRADATTYNTLFMAIN--NVPPDSHVYTTYI 227
D T L + N P + V Y+
Sbjct: 534 RWVPDDKTLGLLHRKLKLLNKPRKAEVVDLYL 565
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 181/383 (47%), Gaps = 86/383 (22%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
R+L +PN+VT++ LI GLC GR+LEA +F ++ +P+V+T+++L
Sbjct: 370 RMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSE 429
Query: 71 LFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMR----------------- 109
+ +G++ + PDVV C+ +I+GL + G MMD+ +R
Sbjct: 430 NLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQG-MMDEALRFFFQAVKRGLTLNNYLF 488
Query: 110 -----------------------------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
PDVVT V+ L++ G+++EA L +++
Sbjct: 489 NALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLK 548
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ +P+ Y TL+DGF S G D+ YN+LIN + ++ VE+
Sbjct: 549 KGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVEN 608
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
+ L RE++ G+ D TYNT+ + P++ +T ID
Sbjct: 609 VLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILID 668
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K+G + +AM +FS++ I T +CLIDG K + A++++ ++ + ++
Sbjct: 669 AYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDR-VS 727
Query: 289 PDVVTYNIMIHGFCKEGQHQKAN 311
P++V+Y+I+I G CK+G ++A+
Sbjct: 728 PNIVSYSILIDGLCKKGLMEEAS 750
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 52/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P +V N ++KGLC +I A+ F + PN++TF+TL
Sbjct: 237 VPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTL--------------I 282
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
V CK + + M+++G+ PD+V +++ + L + GK+EE N L + +
Sbjct: 283 NVYCKE-----LRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMAL 337
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
R V + ++++MD + +G +V +Y+ILING C++ V
Sbjct: 338 ARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVL 397
Query: 186 DAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYI 227
+A + ++L +G+ TY++L M PD V + I
Sbjct: 398 EACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLI 457
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL + G + EA++ F L N LIDG ++ R + ++ +LM +
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMY-ILMGMYKV 516
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTY +++ G ++G+ +A L + + G P+
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 52/373 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G AS F ++ R S +PN+VTF++LI C E R+ EA L+ + P+++
Sbjct: 256 IGVASDFFDMMVR---SGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVI 312
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
++ L L EE + F + K DVV ++I+D + G M+
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+G+ P+VVT +++ + L ++G++ EA + ++++ + P+ TY++L+DGF
Sbjct: 373 KEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLR 432
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL- 209
KG DV ++LING + +++A+ + + G+ + +N L
Sbjct: 433 DGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALI 492
Query: 210 -----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + V PD YT + GL + G + EA+ +F +
Sbjct: 493 DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFS 552
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
LIDG CK IF LMQ+ G+ PD+ YN++I+ F +EG +
Sbjct: 553 PDHIIYCTLIDGFCKKRDPATGLQIFK-LMQSNGIFPDICIYNVLINMFFREGCVENVLE 611
Query: 313 LLLDMEETGLEPN 325
LL ++ + GLEP+
Sbjct: 612 LLREIIKYGLEPD 624
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 163/373 (43%), Gaps = 51/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L L ++V F+S++ G + +A ++ ++ PNV+T+
Sbjct: 324 GKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTY 383
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF-----MMD 105
+ L L E FG I K P V+T +++IDG CK DGF M+
Sbjct: 384 SILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLR 443
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G PDVV +++ + LS+ G M+EA ++R + N +N L+DG + K R
Sbjct: 444 KGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDG-CFRLKRTR 502
Query: 166 H---------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL- 209
DV +Y +L+ G + +++A++L ++L +G D Y TL
Sbjct: 503 DGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLI 562
Query: 210 -----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N + PD +Y I+ ++ G V +++ I +
Sbjct: 563 DGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLE 622
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
I T N +I G C + A +F +L + P+ +T+ I+I +CK+G+ A
Sbjct: 623 PDIVTYNTMICGYCSLKIFSKAIKLFEVL-KCGRTQPNAITFTILIDAYCKDGRMDDAML 681
Query: 313 LLLDMEETGLEPN 325
+ M E G EPN
Sbjct: 682 IFSSMLERGPEPN 694
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 65/266 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCT-------------------------- 35
GR L ++L F+P+ + + +LI G C
Sbjct: 534 GRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593
Query: 36 ---------EGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI-- 82
EG + L +++ + +P+++T+NT+ +L +F + + F V+
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653
Query: 83 --CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+P+ +T T +ID CKDG M+++G P+++T + + D K E
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDG-----------FAWWSKGCRH---DVYSYNILIN 176
A L E M+ V+PN +Y+ L+DG A+ RH DV +Y ILI
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRAD 202
GYCK + +A+ L ML GI D
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPD 799
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 145/343 (42%), Gaps = 89/343 (25%)
Query: 52 FCCDPNVITFNTLALVALNLFEEMVNEFGVI--------------CKPDVVTCTNIIDGL 97
FC +V+ + + A +F+ MV +FG + P V + ++
Sbjct: 92 FCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGEFHGSFRNYGSNPSTVY-SFLLHCY 150
Query: 98 CKDGFMMDQGM-----------------------------RPDVVTLN------------ 116
C++G M+D+ + R DV+ N
Sbjct: 151 CRNG-MVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYE 209
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------- 162
+ ++ K G++E+ +++R + P N ++ G ++
Sbjct: 210 FVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G ++ +++ LIN YCK+ +++A SL M+ +GI PD +
Sbjct: 270 GPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGI-----------------VPDLVI 312
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+ I+GL++ G + E +FS + + + ++D ++G L A +++ ++
Sbjct: 313 YSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRML 372
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++P+VVTY+I+I+G C+ G+ +A G+ + + GLEP+
Sbjct: 373 KE-GISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/363 (29%), Positives = 165/363 (45%), Gaps = 49/363 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
++L + P+ TF +L++G EG I A R+ ++ C +T N L
Sbjct: 202 IMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261
Query: 67 VALNLFEEMV----NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
L E+ + E +PD +T ++GLC++ M+ +G PDV
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------- 161
T N++ + L K+G++EEA +L M+ R P+ T+NTL+ +
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
KG DVY++NILIN CK + A+ L EM + G D TYNTL
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M P + Y T IDGL K + EA +VF + T N
Sbjct: 442 LGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK ++ A+++ + ++ + GL P+ +TYN ++ +CK+G +KA +L M
Sbjct: 502 LIDGLCKDKKIDDAFELINQMI-SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN 560
Query: 321 GLE 323
G E
Sbjct: 561 GFE 563
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 161/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N ++ LC G++ EA + ++ C P++ TFNTL AL N EE ++
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ PDV T +I+ LCK G M + G PD VT N + DNL
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
GK+ +A LL+ M +T TYNT++DG + G + +
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
+N LI+G CKD+ ++DA L +M+SEG++ + TYN++ M
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N D Y T I+GL K G A+KV + T + N ++ L + ++
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEPN 325
A +F M G PD +TY I+ G C+ G ++A +L+M + G P
Sbjct: 619 DALSLFRE-MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 671
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 154/357 (43%), Gaps = 54/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + + F P+ +T+N+ + GLC + A ++ + DP+V T
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N + A + +MV+ C PD+ T +I LC + +
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRG---CLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ PDV T N++ + L K G A L E M P+ TYNTL+D
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +YN +I+G CK +E+A + +M +GI +A T+N
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL K+ + +A ++ + + + T N ++ CK
Sbjct: 501 TL-----------------IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G +K A DI + N G DVVTY +I+G CK G+ Q A +L M G+ P
Sbjct: 544 QGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ V +N L+ L ++ ++ ++ P+V+TFNTL A+ +
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + GV PD T T ++ G ++G M++ G VT+NV+ +
Sbjct: 205 EEMSSR-GV--APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G++E+A ++ I P+ TYNT ++G +G DV
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
++YNI++N CK+ +E+A + +M+ G D TT+NTL A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ V PD + + I+ L K G A+++F + N C T N LID LC +G+
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M++ G +TYN +I G CK+ + ++A + M+ G+ N
Sbjct: 442 LGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 65/231 (28%)
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
+ +T YN L++ SK G + DV ++N L+ C+ V AV
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 201
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ EM S G V PD +TT + G + G + A++V + +
Sbjct: 202 IMLEEMSSRG-----------------VAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244
Query: 249 HKCVLTIETCNCLIDGLCKIGRL------------------KIAWDIF-----------H 279
C T T N LI+G CK+GR+ +I ++ F H
Sbjct: 245 MGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGH 304
Query: 280 ML-----MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L M G PDV TYNI+++ CK GQ ++A G+L M + G P+
Sbjct: 305 ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 39/161 (24%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L+ +++ PN +T+NS++ C +G I +AA + + +
Sbjct: 515 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT---------------- 558
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
N F V DVVT +I+GLCK G M +GMRP N
Sbjct: 559 ---------ANGFEV----DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +L + + +A L M + P+ TY + G
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 161/352 (45%), Gaps = 49/352 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
P+ TF +L++G EG I A R+ ++ C +T N L L E+ +
Sbjct: 213 APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALG 272
Query: 77 ---NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E +PD +T ++GLC++ M+ +G PDV T N++ + L
Sbjct: 273 YIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K+G++EEA +L M+ R P+ T+NTL+ + KG DVY
Sbjct: 333 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++NILIN CK + A+ L EM + G D TYNTL M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P + Y T IDGL K + EA +VF + T N LIDGLCK ++
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A+++ + ++ + GL P+ +TYN ++ +CK+G +KA +L M G E
Sbjct: 513 DDAFELINQMI-SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 563
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 161/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N ++ LC G++ EA + ++ C P++ TFNTL AL N EE ++
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ PDV T +I+ LCK G M + G PD VT N + DNL
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
GK+ +A LL+ M +T TYNT++DG + G + +
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
+N LI+G CKD+ ++DA L +M+SEG++ + TYN++ M
Sbjct: 499 FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N D Y T I+GL K G A+KV + T + N ++ L + ++
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEPN 325
A +F M G PD +TY I+ G C+ G ++A +L+M + G P
Sbjct: 619 DALSLFRE-MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 671
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 154/357 (43%), Gaps = 54/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + + F P+ +T+N+ + GLC + A ++ + DP+V T
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N + A + +MV+ C PD+ T +I LC + +
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRG---CLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ PDV T N++ + L K G A L E M P+ TYNTL+D
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +YN +I+G CK +E+A + +M +GI +A T+N
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL K+ + +A ++ + + + T N ++ CK
Sbjct: 501 TL-----------------IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G +K A DI + N G DVVTY +I+G CK G+ Q A +L M G+ P
Sbjct: 544 QGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ V +N L+ L ++ ++ ++ P+V+TFNTL A+ +
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + GV PD T T ++ G ++G M++ G VT+NV+ +
Sbjct: 205 EEMSSR-GV--APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G++E+A ++ I P+ TYNT ++G +G DV
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
++YNI++N CK+ +E+A + +M+ G D TT+NTL A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ V PD + + I+ L K G A+++F + N C T N LID LC +G+
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M++ G +TYN +I G CK+ + ++A + M+ G+ N
Sbjct: 442 LGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 65/231 (28%)
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
+ +T YN L++ SK G + DV ++N L+ C+ V AV
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 201
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ EM S G V PD +TT + G + G + A++V + +
Sbjct: 202 LMLEEMSSRG-----------------VAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244
Query: 249 HKCVLTIETCNCLIDGLCKIGRL------------------KIAWDIF-----------H 279
C T T N LI+G CK+GR+ +I ++ F H
Sbjct: 245 MGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGH 304
Query: 280 ML-----MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L M G PDV TYNI+++ CK GQ ++A G+L M + G P+
Sbjct: 305 ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 39/161 (24%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L+ +++ PN +T+NS++ C +G I +AA + + +
Sbjct: 515 AFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT---------------- 558
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
N F V DVVT +I+GLCK G M +GMRP N
Sbjct: 559 ---------ANGFEV----DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +L + + +A L M + P+ TY + G
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 146/315 (46%), Gaps = 61/315 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++V FN+L+ GLC EGR+LEA L ++ PN +T+ T+ ALNL
Sbjct: 9 DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLL 68
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+M K DVV T IID LCKDG M D+G+ P+V+T N M D
Sbjct: 69 RKMDESH---IKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGC 125
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
GK +A LL MI+ +V+P DV ++N LIN + K+
Sbjct: 126 CSYGKWTDAEQLLRDMIESNVDP---------------------DVVTFNALINAFVKEG 164
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ +A L REML I D TYN+L IDG K+ + +A +
Sbjct: 165 KISEAEELYREMLGRNIFPDTITYNSL-----------------IDGFCKHSRLDDAKHI 207
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F + + + T N LI G C+ R+ + H +++ GL PD V+YN +IHGFC
Sbjct: 208 FDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRR-GLVPDSVSYNTLIHGFC 266
Query: 303 KEGQHQKANGLLLDM 317
+ G A L +M
Sbjct: 267 QAGDLNAAQDLFQEM 281
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 115/255 (45%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M+++G + DVV N + + L ++G++ EA L++ M++ PN TY T+++G
Sbjct: 1 MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ DV Y +I+ CKD + A +L EM +GI + TYN
Sbjct: 61 TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M +NV PD + I+ K G + EA +++ +
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRN 180
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T N LIDG CK RL A IF LM + G +P+V+T N +I G C+ +
Sbjct: 181 IFPDTITYNSLIDGFCKHSRLDDAKHIFD-LMVSKGGSPNVITINTLIGGCCRAKRVDDG 239
Query: 311 NGLLLDMEETGLEPN 325
LL +M GL P+
Sbjct: 240 IKLLHEMLRRGLVPD 254
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 53/234 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG LL ++ S ++V + ++I LC +G +A LF +++ PNV+T
Sbjct: 58 MGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLT 117
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+N + IDG C G M++ + P
Sbjct: 118 YNCM-----------------------------IDGCCSYGKWTDAEQLLRDMIESNVDP 148
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
DVVT N + + K+GK+ EA L M+ R++ P+T TYN+L+DGF
Sbjct: 149 DVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIF 208
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
SKG +V + N LI G C+ + V+D + L EML G+ D+ +YNTL
Sbjct: 209 DLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLI 262
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 161/337 (47%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+N I GLC R+ EA + + L +++T+ TL L V + +
Sbjct: 259 SIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMM 318
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNL 122
+EM+ E G + P + +I+GL K G + G+ P++ N M ++L
Sbjct: 319 DEMI-ELGYV--PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSL 375
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K GK+EEA L VM +R +NPN TY L+DGF +K G V
Sbjct: 376 CKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATV 435
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
YSYN +IN CK ++ A L +EM+ +G++ P YT+ I
Sbjct: 436 YSYNSMINCQCKFGKMKMAELLFKEMVDKGLK-----------------PTVATYTSLIS 478
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G K+G V +A K++ + T LI GLC+I ++ A +F +++ +
Sbjct: 479 GYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVE-LKIL 537
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ VTYN++I G C+EG +A LL +M + GL P+
Sbjct: 538 PNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPD 574
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 57/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L ++ P + T+ SLI G C +G + +A +L+ ++ PN +TF
Sbjct: 449 GKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTF 508
Query: 62 NTL--ALVALN-------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L L +N LF+EMV E ++ P+ VT +I+G C++G
Sbjct: 509 TALICGLCQINKMAEASKLFDEMV-ELKIL--PNEVTYNVLIEGHCREGNTTRAFELLDE 565
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G+ PD T + L G++ EA + + + + Y L+ GF
Sbjct: 566 MIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGR 625
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + D+ SY +LI+G ++N L REM +G++ D Y
Sbjct: 626 IKEALVARQEMVGRGLQMDLVSYAVLISG-ALNQNDRILFELLREMHGKGMQPDNVIYTI 684
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L F+ N+ P+S YT ++GL+K G+V EA +F + +
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGE 744
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T C +D L K G ++ A + + ++Q G + VTYNI+I G+C+ G+ Q+A
Sbjct: 745 AIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ--GSFANTVTYNILIRGYCQIGKFQEA 802
Query: 311 NGLLLDMEETGLEPN 325
LL M G+ P+
Sbjct: 803 AKLLDVMIGIGMVPD 817
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 164/374 (43%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L + PN VTF +LI GLC ++ EA++LF ++ PN +T+
Sbjct: 484 GLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTY 543
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD 105
N L A L +EM+ + G+ PD T +I GLC G F+ D
Sbjct: 544 NVLIEGHCREGNTTRAFELLDEMIKK-GL--SPDTYTYRPLIAGLCSTGRVSEAKEFIND 600
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ R D + + K+G+++EA + M+ R + + +Y L+ G
Sbjct: 601 LHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND 660
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY--- 206
KG + D Y ILI+G+ K N++ A M+ EG ++ TY
Sbjct: 661 RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTAL 720
Query: 207 -NTLF--------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
N LF M + P+ Y ++D L K G + A+++ +A+
Sbjct: 721 VNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF 780
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T+ T N LI G C+IG+ + A + +++ G+ PD +TY+ I+ +CK G A
Sbjct: 781 ANTV-TYNILIRGYCQIGKFQEAAKLLDVMI-GIGMVPDCITYSTFIYEYCKRGNVDAAM 838
Query: 312 GLLLDMEETGLEPN 325
+ M + GL+P+
Sbjct: 839 DMWECMLQRGLKPD 852
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 33/251 (13%)
Query: 88 VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
V ++DG+ M D G+ P+V TL+ + + L++ K + L + ++ V P+
Sbjct: 166 VQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDC 225
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y ++ GC + +YN+ ING CK + V +AV + R
Sbjct: 226 YIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRS 285
Query: 194 MLSEGIRADATTYNTLFMAINNVP------------------PDSHVYTTYIDGLYKNGF 235
+ +G++AD TY TL + + + P + I+GL K G
Sbjct: 286 LGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGS 345
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ A ++ + +G V + N +I+ LCK G+L+ A +F +M GL P+ VTY
Sbjct: 346 IEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFS-VMAERGLNPNDVTYT 404
Query: 296 IMIHGFCKEGQ 306
I+I GF + +
Sbjct: 405 ILIDGFGRRAK 415
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 141/335 (42%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEEM 75
P + T ++L+ L + + LF L P+ + + L N +E+
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247
Query: 76 VNEF-GVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDNLSK 124
+N+ G C +VT I+GLCK + ++G++ D+VT + L +
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GCRHDVYS 170
+ E +++ MI+ P+ + L++G F +K G +++
Sbjct: 308 IQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFV 367
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN +IN CK +E+A L M G+ P+ YT IDG
Sbjct: 368 YNSMINSLCKTGKLEEAELLFSVMAERGLN-----------------PNDVTYTILIDGF 410
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ + A F+ + T+ + N +I+ CK G++K+A +F M + GL P
Sbjct: 411 GRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKE-MVDKGLKPT 469
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V TY +I G+CK+G KA L +M G+ PN
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPN 504
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 34/209 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ PN VT+ +L+ GL G + EA LFK++ V PN IT+
Sbjct: 710 YVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYG---------------- 753
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C D +T ++ + M QG + VT N++ + GK +EA LL+VM
Sbjct: 754 ----CFLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVM 809
Query: 139 IQRDVNPNTCTYNTLMDGF-----------AW---WSKGCRHDVYSYNILINGYCKDRNV 184
I + P+ TY+T + + W +G + D +N LI+ C + +
Sbjct: 810 IGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGEL 869
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ A+ L +M+ G++ +TY++L + +
Sbjct: 870 DRALQLRNDMMLRGLKPTQSTYHSLMVQL 898
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + +L R+L+ PN +T+ + L EG + A +L + + N +T+
Sbjct: 728 GYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAM-LQGSFANTVTY 786
Query: 62 NTL--ALVALNLFEEMVN----EFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
N L + F+E G+ PD +T + I CK G M+
Sbjct: 787 NILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQ 846
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+G++PD V N + +G+++ A L M+ R + P TY++LM A ++
Sbjct: 847 RGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRAR 903
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 178/384 (46%), Gaps = 89/384 (23%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
+L +L TPN T+N+L+ +C ILEA +F +++ P++++F++L V
Sbjct: 349 VLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLA 408
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------------ 102
AL F EM G++ PD V T +IDG C++G
Sbjct: 409 RNGHLYQALMHFREMERS-GIV--PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465
Query: 103 ---------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
M+++GM PD T + KDG M++A L
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525
Query: 136 EVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRHDV----YSYNILINGYCKD 181
E M++ ++ P+ TYNTL+DGF W R D+ SY ++NG+C
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ +A++LC +ML +GIR + T NTL I G ++G + +A +
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTL-----------------IKGYCRSGDMPKAYE 628
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
S + ++ + + N LIDG K L+ A+ + + M+ GL +++TYN++++GF
Sbjct: 629 YLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINE-MEKRGLQFNIITYNLILNGF 687
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C EG+ Q+A +L M E G+ P+
Sbjct: 688 CAEGKMQEAEQVLRKMIEIGINPD 711
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 173/375 (46%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL P ++T+N+++ GLC G+ A + ++ PN T+
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL L A +F+EM GV+ PD+V+ +++I L ++G
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRR-GVL--PDLVSFSSLIGVLARNGHLYQALMHFRE 422
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M G+ PD V ++ D ++G + +A + + M+ R + TYNT ++G
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482
Query: 157 FA--------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
FA +G D Y++ LI GYCKD N++ A++L M+ ++ D TYNT
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNT 542
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M ++ PD Y T ++G +G + EA+ + +
Sbjct: 543 LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKG 602
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ TCN LI G C+ G + A++ ++ N G+ PD +YN +I G+ KE +KA
Sbjct: 603 IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEKA 661
Query: 311 NGLLLDMEETGLEPN 325
L+ +ME+ GL+ N
Sbjct: 662 FILINEMEKRGLQFN 676
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 56/333 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV----NEFG 80
N L+ GL G + A ++ ++ + NV T N + AL FE ++ + G
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEE 130
D+VT +I+ C++G + + +GM P ++T N + L K GK +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A +L M+Q + PN TYNTL+ + CR D N+ +A +
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLL------VEICRRD---------------NILEAQEI 384
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
EM G+ D ++++L M + + PD+ +YT IDG +
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
NG + +A+K+ + C + + T N ++GLCK A +F+ +++ G+ PD
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER-GMVPDFY 503
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T+ +I G+CK+G KA L M T L+P+
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 36/222 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ TF +LI+G C +G + +A LF+ + P+ +T+NTL A L
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+++M+ + + PD ++ +++G C G M+++G+RP++VT N +
Sbjct: 560 WDDMIRKDII---PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ G M +A L MI + P++ +YNTL+DG+ +G + +
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFN 676
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YN+++NG+C + +++A + R+M+ GI D TY++L
Sbjct: 677 IITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHDVYSYN 172
K+ E + +++ ++ V+ + N L+ G AW G +VY+ N
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
I++N CKDR E+ + +M +G+ AD TYNTL I+ +
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTL-----------------INAYCR 304
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G V EA ++ ++ + + T N ++ GLCKIG+ A D+ ++Q GLTP+
Sbjct: 305 EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ-LGLTPNAA 363
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN ++ C+ +A + +M G+ P+
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
F+L+ + N++T+N ++ G C EG++ EA ++ +K+ +P+ T+++L
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 174/375 (46%), Gaps = 89/375 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
TPN T+N+L+ +C ILEA +F +++ P++++F++L V AL
Sbjct: 358 LTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQAL 417
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------------------------- 102
F EM G++ PD V T +IDG C++G
Sbjct: 418 MHFREMERS-GIV--PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFL 474
Query: 103 ------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
M+++GM PD T + KDG M++A L E M++ ++
Sbjct: 475 NGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLK 534
Query: 145 PNTCTYNTLMDGF----------AWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSL 190
P+ TYNTL+DGF W R D+ SY ++NG+C + +A++L
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
C +ML +GIR + T NTL I G ++G + +A + S + ++
Sbjct: 595 CDQMLEKGIRPNLVTCNTL-----------------IKGYCRSGDMPKAYEYLSKMISNG 637
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + N LIDG K L+ A+ + + M+ GL +++TYN++++GFC EG+ Q+A
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINE-MEKRGLQFNIITYNLILNGFCAEGKMQEA 696
Query: 311 NGLLLDMEETGLEPN 325
+L M E G+ P+
Sbjct: 697 EQVLRKMIEIGINPD 711
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 173/375 (46%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL P ++T+N+++ GLC G+ A + ++ PN T+
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATY 365
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL L A +F+EM GV+ PD+V+ +++I L ++G
Sbjct: 366 NTLLVEICRRDNILEAQEIFDEMSRR-GVL--PDLVSFSSLIGVLARNGHLYQALMHFRE 422
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M G+ PD V ++ D ++G + +A + + M+ R + TYNT ++G
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482
Query: 157 FA--------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
FA +G D Y++ LI GYCKD N++ A++L M+ ++ D TYNT
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNT 542
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M ++ PD Y T ++G +G + EA+ + +
Sbjct: 543 LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKG 602
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ TCN LI G C+ G + A++ ++ N G+ PD +YN +I G+ KE +KA
Sbjct: 603 IRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN-GIIPDSFSYNTLIDGYLKEANLEKA 661
Query: 311 NGLLLDMEETGLEPN 325
L+ +ME+ GL+ N
Sbjct: 662 FILINEMEKRGLQFN 676
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 56/333 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV----NEFG 80
N L+ GL G + A ++ ++ + NV T N + AL FE ++ + G
Sbjct: 226 NKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEG 285
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEE 130
D+VT +I+ C++G + + +GM P ++T N + L K GK +
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A +L M+Q + PN TYNTL+ + CR D N+ +A +
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLL------VEICRRD---------------NILEAQEI 384
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
EM G+ D ++++L M + + PD+ +YT IDG +
Sbjct: 385 FDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCR 444
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
NG + +A+K+ + C + + T N ++GLCK A +F+ +++ G+ PD
Sbjct: 445 NGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER-GMVPDFY 503
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T+ +I G+CK+G KA L M T L+P+
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD 536
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 36/222 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ TF +LI+G C +G + +A LF+ + P+ +T+NTL A L
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+++M+ + + PD ++ +++G C G M+++G+RP++VT N +
Sbjct: 560 WDDMIRKDII---PDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ G M +A L MI + P++ +YNTL+DG+ +G + +
Sbjct: 617 YCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFN 676
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YN+++NG+C + +++A + R+M+ GI D TY++L
Sbjct: 677 IITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHDVYSYN 172
K+ E + +++ ++ V+ + N L+ G AW G +VY+ N
Sbjct: 202 KLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLN 261
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
I++N CKDR E+ + +M +G+ AD TYNTL I+ +
Sbjct: 262 IMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTL-----------------INAYCR 304
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G V EA ++ ++ + + T N ++ GLCKIG+ A D+ ++Q GLTP+
Sbjct: 305 EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ-LGLTPNAA 363
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN ++ C+ +A + +M G+ P+
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
F+L+ + N++T+N ++ G C EG++ EA ++ +K+ +P+ T+++L
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSL 718
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 48/334 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
+++++ ++IKGL RI EA LF+KL C PNV+ + + L+ E+ + F
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421
Query: 80 ----GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
G C P T T +IDGLCK M+ +G PD +T + D SK
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 481
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
KM+EA LL+VM+ + P TY +++ GF +GC ++ +
Sbjct: 482 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 541
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
L++ Y E+A + EM + G PD +YT+ ID L+
Sbjct: 542 TSLLSYYLSKGRAEEAYQVLTEMTARG-----------------CAPDVILYTSLIDLLF 584
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G V EA VF ++ C T +I KIG ++ A +I LM G+ PD
Sbjct: 585 STGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILE-LMAKSGVGPDC 643
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN ++ G+ K + +A G+ M +G++PN
Sbjct: 644 FAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 150/349 (42%), Gaps = 53/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL +L P VT+ S++ G C I EA + ++ C+P + F +L
Sbjct: 490 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 549
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A A + EM C PDV+ T++ID L G M+++G P
Sbjct: 550 SKGRAEEAYQVLTEMTARG---CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAP 606
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D +T + N SK G +E A +LE+M + V P+ YN+LMDG+ +
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 666
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G + + ++N+L++G KD + A SL +EML + + V
Sbjct: 667 DRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEK----------------DEV 710
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PP YT IDGL K G V EA F + + + T LI L K GR+ A
Sbjct: 711 PPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKK 770
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ G+ PDV Y+ +I G A + +M + G PN
Sbjct: 771 LVEDMVK-LGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 818
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 164/404 (40%), Gaps = 85/404 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +LL + L F P++ + S+I G C G + ++ +++ C P+ +
Sbjct: 104 GQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAY 162
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A LFE M C D VT +I+ L G
Sbjct: 163 FVLIDPLCKLGRVDEAYELFERMRKSG---CLGDYVTFMTLIEALSNHGKLDEACELYRE 219
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G P + + + L K GK++EAN + + ++ + V + YN+LMDG+ +
Sbjct: 220 MIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR 279
Query: 163 ---GCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + D+ +YNIL+ G+ + ++DA+ L + + S G + +A TY T
Sbjct: 280 VDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTT 339
Query: 209 LFMAINNV-----------------------------------------------PPDSH 221
+ + + P+
Sbjct: 340 IIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVV 399
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT IDGL K G + + +K F + CV T T +IDGLCK L A +F +
Sbjct: 400 AYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQM 459
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+Q G PD +TY +I GF K + +A LL M G EP
Sbjct: 460 VQK-GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPT 502
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 147/338 (43%), Gaps = 55/338 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V N ++ GLC +I +A LF ++ C+P ++++NT+ L +++ +E
Sbjct: 18 PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG------FMMDQGM---RPDVVTLNVMTDNLSKD 125
F + C+PDV+ T +I G CK G +++Q + RPDV + K
Sbjct: 78 FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGYCKA 137
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G ++ +LE M+ + GC D +Y +LI+ CK V+
Sbjct: 138 GDLDTGFKILEEML---------------------AAGCIPDAAAYFVLIDPLCKLGRVD 176
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYI 227
+A L M G D T+ TL A++N P V + I
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLI 236
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L K G V EA +++ + K + N L+DG CK+GR+ + +++
Sbjct: 237 FALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+ TYNI++ GF + + A L + G +PN
Sbjct: 297 -PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPN 333
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+ PDVV N++ + L K K+++A L M P +YNT++ G A K
Sbjct: 11 MHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDK 70
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC DV ++ LI+G+CK + +
Sbjct: 71 MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQ------------------VGHML 112
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L A+ PD +YT+ I G K G + K+ + C+ LID LCK+
Sbjct: 113 LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKL 172
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
GR+ A+++F M+ G D VT+ +I G+ +A L +M E G EP
Sbjct: 173 GRVDEAYELFER-MRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 42/208 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +NSL+ G R+ +A ++ ++ PN +TFN L A +L
Sbjct: 641 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 700
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+EM+ + V P +V+ T +IDGL K G M+D+G+ P+ T + +
Sbjct: 701 FKEMLEKDEV--PPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYS 758
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L+K G++ EA L+E M++ VNP DV +Y+ LI G
Sbjct: 759 LAKAGRIPEAKKLVEDMVKLGVNP---------------------DVQAYSALITGLIDS 797
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTL 209
V+ A + +EM+ G + TY L
Sbjct: 798 SMVDTAWDVFQEMMKRGCAPNEVTYKVL 825
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 57/227 (25%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F + R++ S PN VTFN L+ GL +G+
Sbjct: 658 RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR--------------------- 696
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
A +LF+EM+ + V P +V+ T +IDGL K G M+D+G+ P+
Sbjct: 697 -----AFSLFKEMLEKDEV--PPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPEC 749
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW----- 159
T + +L+K G++ EA L+E M++ VNP+ Y+ L+ G AW
Sbjct: 750 HTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQE 809
Query: 160 -WSKGCRHDVYSYNILINGYCKDRNVEDAVSL--CREMLSEGIRADA 203
+GC + +Y +L G+ R A+ L ++ S+G+ +A
Sbjct: 810 MMKRGCAPNEVTYKVLRRGF---RAAGRALDLEAVKQHFSQGVAMEA 853
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+ G DV + NI++NG CK R ++ A+ L EM S G +YNT+
Sbjct: 13 TTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV----------- 61
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
I GL + EA K F+++ ++ C + LI G CK G+ ++ HM
Sbjct: 62 ------ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG----HM 111
Query: 281 LMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ PDV Y +IHG+CK G +L +M G P+
Sbjct: 112 LLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPD 158
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 168/373 (45%), Gaps = 66/373 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----- 63
LL + F+ + T +++ LC +GR + + F+++ PNV+ +
Sbjct: 94 ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGL 153
Query: 64 ----LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGM 108
A ++ EEMV G KP+V T T +IDGLCK G+ +
Sbjct: 154 CKRRYVKQAFHVLEEMV---GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY 210
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FA 158
+P+V T VM ++GK+ A LL M+++ + PNT TY TL+ G F
Sbjct: 211 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 270
Query: 159 WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+K G ++Y+YN +I+G+CK +++A + R S+G++ D TY L
Sbjct: 271 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 330
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL--- 253
M N PD YT+ I + + E+ K F KC++
Sbjct: 331 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFD-----KCLMIGL 385
Query: 254 --TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T +T +I G CK+GR +A +F ++QN G D +TY +I G CKE + ++A
Sbjct: 386 LPTKQTYTSMIAGYCKVGRSTLALRVFERMVQN-GCFADSITYGALISGLCKESRLEEAK 444
Query: 312 GLLLDMEETGLEP 324
L M + L P
Sbjct: 445 ALYEGMLDKRLVP 457
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 121/265 (45%), Gaps = 43/265 (16%)
Query: 86 DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
D TCT ++ LC+ G M++ G P+VV D L K +++A +L
Sbjct: 107 DNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVL 166
Query: 136 EVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HDVYSYNILINGYCK 180
E M+ R + PN T+ TL+DG W + R +V++Y ++I GYC+
Sbjct: 167 EEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCR 226
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ + A L M+ +G++ P+++ YTT I G K G A
Sbjct: 227 EGKLARAEMLLVRMVEQGLK-----------------PNTNTYTTLIGGHCKGGSFDRAF 269
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + + I T N +IDG CK G+++ A+ + M + GL D +TY I+I
Sbjct: 270 ELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRM-ATSQGLKFDKITYTILITE 328
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
CK+G A L M E G P+
Sbjct: 329 HCKQGHITYALDLFDRMVENGCCPD 353
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 46/239 (19%)
Query: 88 VTCTNIIDGLCKDGFM-MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
V + DG+ + G M++G VV ++GK+EE + LL M
Sbjct: 55 VYARKVFDGMTRAGVSPMNRGFGALVVVC-------CREGKVEEVDALLAAM-------- 99
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W G D + +++ C+ +D R ML G
Sbjct: 100 -------------WRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETG-------- 138
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PP+ YT +IDGL K +V +A V + + T LIDGLC
Sbjct: 139 ---------TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 189
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
KIG + A+ +F L+++ P+V TY +MI G+C+EG+ +A LL+ M E GL+PN
Sbjct: 190 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 248
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 121/323 (37%), Gaps = 78/323 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +LL R++ PN T+ +LI G C G A L K+ PN+ T+
Sbjct: 228 GKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 287
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
N +IDG CK G + + QG++ D
Sbjct: 288 NA-----------------------------VIDGFCKKGKIQEAYKVLRMATSQGLKFD 318
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
+T ++ K G + A L + M++ GC D+ +Y
Sbjct: 319 KITYTILITEHCKQGHITYALDLFDRMVE---------------------NGCCPDIEAY 357
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI+ YC+ R +E++ + L G+ P YT+ I G
Sbjct: 358 TSLISTYCQQRQMEESQKFFDKCLMIGL-----------------LPTKQTYTSMIAGYC 400
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G A++VF + + C T LI GLCK RL+ A ++ ++ + L P
Sbjct: 401 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGML-DKRLVPCE 459
Query: 292 VTYNIMIHGFCKEGQHQKANGLL 314
VT + +C+ + A +L
Sbjct: 460 VTRVTLTFEYCRREKTSIAVSVL 482
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 168/373 (45%), Gaps = 66/373 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----- 63
LL + F+ + T +++ LC +GR + + F+++ PNV+ +
Sbjct: 202 ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGL 261
Query: 64 ----LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGM 108
A ++ EEMV G KP+V T T +IDGLCK G+ +
Sbjct: 262 CKRRYVKQAFHVLEEMV---GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY 318
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FA 158
+P+V T VM ++GK+ A LL M+++ + PNT TY TL+ G F
Sbjct: 319 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 378
Query: 159 WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+K G ++Y+YN +I+G+CK +++A + R S+G++ D TY L
Sbjct: 379 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 438
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL--- 253
M N PD YT+ I + + E+ K F KC++
Sbjct: 439 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFD-----KCLMIGL 493
Query: 254 --TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T +T +I G CK+GR +A +F ++QN G D +TY +I G CKE + ++A
Sbjct: 494 LPTKQTYTSMIAGYCKVGRSTLALRVFERMVQN-GCFADSITYGALISGLCKESRLEEAK 552
Query: 312 GLLLDMEETGLEP 324
L M + L P
Sbjct: 553 ALYEGMLDKRLVP 565
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 135/307 (43%), Gaps = 52/307 (16%)
Query: 44 RLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF- 102
R F+ L V CC + L A+ + F + D TCT ++ LC+ G
Sbjct: 182 RSFRALVVVCCREGKVEEVDALLAAMWRYG-----FSL----DNATCTVVVRSLCEKGRF 232
Query: 103 ---------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
M++ G P+VV D L K +++A +LE M+ R + PN T+ TL
Sbjct: 233 KDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 292
Query: 154 MDGF---AWWSKGCR------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+DG W + R +V++Y ++I GYC++ + A L M+ +G
Sbjct: 293 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 352
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
++ P+++ YTT I G K G A ++ + + + I T
Sbjct: 353 LK-----------------PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 395
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +IDG CK G+++ A+ + M + GL D +TY I+I CK+G A L M
Sbjct: 396 NAVIDGFCKKGKIQEAYKVLRM-ATSQGLKFDKITYTILITEHCKQGHITYALDLFDRMV 454
Query: 319 ETGLEPN 325
E G P+
Sbjct: 455 ENGCCPD 461
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 44/238 (18%)
Query: 88 VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
V + DG+ + G PD + + ++GK+EE + LL M
Sbjct: 163 VYARKVFDGMTRAGVC------PDERSFRALVVVCCREGKVEEVDALLAAM--------- 207
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W G D + +++ C+ +D R ML G
Sbjct: 208 ------------WRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETG--------- 246
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PP+ YT +IDGL K +V +A V + + T LIDGLCK
Sbjct: 247 --------TPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCK 298
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IG + A+ +F L+++ P+V TY +MI G+C+EG+ +A LL+ M E GL+PN
Sbjct: 299 IGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPN 356
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 121/323 (37%), Gaps = 78/323 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +LL R++ PN T+ +LI G C G A L K+ PN+ T+
Sbjct: 336 GKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 395
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
N +IDG CK G + + QG++ D
Sbjct: 396 NA-----------------------------VIDGFCKKGKIQEAYKVLRMATSQGLKFD 426
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
+T ++ K G + A L + M++ GC D+ +Y
Sbjct: 427 KITYTILITEHCKQGHITYALDLFDRMVE---------------------NGCCPDIEAY 465
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI+ YC+ R +E++ + L G+ P YT+ I G
Sbjct: 466 TSLISTYCQQRQMEESQKFFDKCLMIGL-----------------LPTKQTYTSMIAGYC 508
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G A++VF + + C T LI GLCK RL+ A ++ ++ + L P
Sbjct: 509 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGML-DKRLVPCE 567
Query: 292 VTYNIMIHGFCKEGQHQKANGLL 314
VT + +C+ + A +L
Sbjct: 568 VTRVTLTFEYCRREKTSIAVSVL 590
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 174/372 (46%), Gaps = 54/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + FN L+KGLC + R +A + + + C PNV +
Sbjct: 104 GRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFS 163
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ + AL L M ++ G C P+VV+ + + DGL K G
Sbjct: 164 HTIILKGLCHENRSQEALELLHMMADDGGG-CLPNVVSYSTVTDGLLKGGDPDKAYATYR 222
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ + P+VVT + + L K M++A + + M++ V PN TY +L+ GF
Sbjct: 223 EMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSG 282
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G +V +Y+ ++ CK+ +A + M+ G++ D TTY+
Sbjct: 283 QLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYS 342
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M +++ PD +V+ T I K G V EAM VFS + +
Sbjct: 343 SLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQ 402
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T N LI+G CKI R++ A +F ++ N G++P+ +TYNIM+ G + G+
Sbjct: 403 GLKPNCVTYNTLINGYCKITRMENALALFQEMVSN-GVSPNFITYNIMLQGLFRTGRTGT 461
Query: 310 ANGLLLDMEETG 321
A + + ++G
Sbjct: 462 AKEFYVQIIKSG 473
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 118/272 (43%), Gaps = 45/272 (16%)
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTC---TNIID-GLCKDGFMMDQGMRPDVV 113
V FN +A ++ V+ +G++ + C +D G G ++ +G R + +
Sbjct: 72 VSRFNRMARAGASMVTPTVHTYGIL-----IGCCCSAGRLDLGFAALGHVVKKGFRVEPI 126
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
N + L D + ++A ++++++ GC +V+S+ I
Sbjct: 127 IFNPLLKGLCADKRTDDA---MDIVLR-----------------GMTELGCVPNVFSHTI 166
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
++ G C + ++A+ L M +G P+ Y+T DGL K
Sbjct: 167 ILKGLCHENRSQEALELLHMMADDG---------------GGCLPNVVSYSTVTDGLLKG 211
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G +A + + + + + + T + +I LCK + A ++ +++N G+TP+ T
Sbjct: 212 GDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKN-GVTPNCFT 270
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++HGFC GQ +A L M G+EPN
Sbjct: 271 YTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPN 302
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 169/350 (48%), Gaps = 54/350 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R F LL + + PN++T+N +I GLC GRI E + + +++ P+ +T
Sbjct: 251 LKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVT 310
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MD 105
+NTL AL L EM+ G+ PDVVT T++I+ +CK G + D
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRN-GL--PPDVVTYTSLINTMCKAGNLNRAMEFFD 367
Query: 106 Q----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
Q G+RP+ VT + + S+ G M+EA + + MI+ P TYN L++G
Sbjct: 368 QMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSG 427
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG DV SY+ +I G+C+ + ++ A + EM+ +G+ DA TY+
Sbjct: 428 RMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYS 487
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+L I GL + + EA +F + N + T LI+G CK
Sbjct: 488 SL-----------------IQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCK 530
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G L A ++ H M G PD VTYN++I+G K+ + ++A LLL +
Sbjct: 531 EGDLNEALNL-HDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 154/330 (46%), Gaps = 59/330 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++ S + N+ ++N LI+G C G + R F+++ C PNV+T+NT+
Sbjct: 194 MIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTV--------- 244
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
G CK I + M +G+ P+++T N++ + L + G++EE +
Sbjct: 245 -----IGAYCK-----LKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSG 294
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
+L M ++ P+ TYNTL +NGYCK N A+ L E
Sbjct: 295 VLAEMDRKGFAPDGVTYNTL---------------------VNGYCKVGNFHQALVLHSE 333
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
ML G+ D TY +L M + + P+ YT+ I+G + GF
Sbjct: 334 MLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGF 393
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ EA +++ + TI T N L++G C GR++ A + M+ GL+PDVV+Y+
Sbjct: 394 MDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG-MEGKGLSPDVVSYS 452
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I GFC+ + +A + +M E G+ P+
Sbjct: 453 TIIAGFCRYQELDRAFQMNAEMVEKGVSPD 482
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 169/373 (45%), Gaps = 69/373 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL +L + P++VT+ SLI +C G + A F +++V PN +T
Sbjct: 321 VGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVT 380
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ +L A +++EM+ P +VT +++G C G M +
Sbjct: 381 YTSLINGFSQKGFMDEAYRIWDEMIRSG---FPPTIVTYNALLNGHCVSGRMEEAIGLLR 437
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G+ PDVV+ + + + +++ A + M+++ V+P+ TY++L+ G
Sbjct: 438 GMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQR 497
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+K D ++Y LINGYCK+ ++ +A++L EM+ +G D TYN
Sbjct: 498 RLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYN 557
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA----MKVF--SAIGNHKCVLT-IETCN- 259
L I+GL K EA +K+F +I N T IE+C+
Sbjct: 558 VL-----------------INGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSD 600
Query: 260 -------CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
LI G C G + A +F +++ P+ YN++IHG C++G KA+
Sbjct: 601 IEFKSVVALIKGFCMKGLMNEADQVFESMIKR-NQKPNEAVYNVIIHGHCRDGNVHKAHK 659
Query: 313 LLLDMEETGLEPN 325
L +M + G P+
Sbjct: 660 LYKEMVDFGFIPH 672
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 122/290 (42%), Gaps = 86/290 (29%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+ + ++ S F P +VT+N+L+ G C GR+ EA L + + P+V++++T+
Sbjct: 397 AYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIA 456
Query: 65 -------------------------------ALV-----------ALNLFEEMVNEFGVI 82
+L+ A +LF+EM+N+ +
Sbjct: 457 GFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLL- 515
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
PD T T++I+G CK+G M+ +G PD VT NV+ + L+K + EA
Sbjct: 516 --PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573
Query: 133 CLLEVMIQRDVNPNTCTYNTLMD---------------GF--------------AWWSKG 163
LL + + PN TY+TL++ GF + +
Sbjct: 574 RLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRN 633
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ + YN++I+G+C+D NV A L +EM+ G T L A+
Sbjct: 634 QKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 37/156 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----------ALVA 68
F P+ VT+N LI GL + R EA RL KL PN IT++TL ++VA
Sbjct: 549 FLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVA 608
Query: 69 L--------------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
L +FE M+ KP+ II G C+DG M+
Sbjct: 609 LIKGFCMKGLMNEADQVFESMIKRNQ---KPNEAVYNVIIHGHCRDGNVHKAHKLYKEMV 665
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
D G P VT+ + L +G E+ N ++ +++
Sbjct: 666 DFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILR 701
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 165/358 (46%), Gaps = 56/358 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ TFN +I LC G++ +A + + + V+ C PNV+++NTL A
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+ +EMV P++ T +IDG KD M+DQ ++P+V++ N +
Sbjct: 281 DAVLKEMVEN---DVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ L GK+ EA + + M+ V PN TYN L++GF + +G
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVP---- 217
YN+LI+ YCK ++D +L EM EGI D TYN L + N+
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD + ++G + G +A + + T N ++ G CK
Sbjct: 458 LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G LK A ++ + + L +V +YN+++ G+ ++G+ + AN LL +M E GL PN
Sbjct: 518 EGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 158/326 (48%), Gaps = 56/326 (17%)
Query: 48 KLNVFCCDPNVITF---NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM 104
KL+ C P +I N A V +++EM+ +P+V T +I+ LCK G M
Sbjct: 185 KLSALSCKPLMIALLKENRSADVEY-VYKEMIRR---KIQPNVFTFNVVINALCKTGKMN 240
Query: 105 DQ----------GMRPDVVTLNVMTD---NLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
G P+VV+ N + D L +GKM +A+ +L+ M++ DV+PN T+N
Sbjct: 241 KARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFN 300
Query: 152 TLMDGFAW---------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
L+DGF W + + +V SYN LING C + +A+S+ +M+S
Sbjct: 301 ILIDGF-WKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVS 359
Query: 197 EGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLE 238
G++ + TYN L P + +Y ID K G + +
Sbjct: 360 AGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDD 419
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+ + V + T NCLI GLC+ G ++ A +F L + GL PD+VT++I++
Sbjct: 420 GFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGL-PDLVTFHILM 477
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
G+C++G+ +KA LL +M + GL+P
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 67/267 (25%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
G + +L PN++++NSLI GLC G+I EA + K+ PN+IT+N L
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 65 -ALVALNLFEEMVNEFGVI-------------------CK-------------------- 84
++ +E ++ FG + CK
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433
Query: 85 PDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PDV T +I GLC++G + DQ G+ PD+VT +++ + + G+ +A L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF---------------AWWSKGCRHDVYSYNILINGYC 179
L+ M + + P TYN +M G+ + R +V SYN+L+ GY
Sbjct: 493 LKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTY 206
+ +EDA L EML +G+ + TY
Sbjct: 553 QKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ GF L + P++ T+N LI GLC G I A +LF +L P+++T
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVT 472
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------- 104
F+ L + A L +EM ++ G+ KP +T ++ G CK+G +
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEM-SKMGL--KPRHLTYNIVMKGYCKEGNLKAATNMRT 529
Query: 105 ----DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ +R +V + NV+ S+ GK+E+AN LL M+++ + PN TY + +
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE 584
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 231 YKNGFVLE-AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
Y N E + F G + L+ +C L+ L K R ++ +++ + P
Sbjct: 163 YANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK-IQP 221
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V T+N++I+ CK G+ KA ++ DM+ G PN
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPN 257
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 163/353 (46%), Gaps = 53/353 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P + N +I GLC GR+ A +++++N P+ +T+ L A+ +
Sbjct: 3 PGTLLHNVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKARRLRDAVQV 61
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDN 121
+EMV+ V PD T T ++ LC D M+ +GM + +T + + D
Sbjct: 62 LQEMVSARHV---PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K +++EA L+E M +R P TYN+++ GF ++GC D
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPD 178
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV----------- 216
+ +Y LI G+CK R+V + L E+ G D TY+T+ +
Sbjct: 179 IITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE 238
Query: 217 ----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P + Y + I G + G + EA+++ + + KC + T L+ CK+GRL
Sbjct: 239 EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLD 298
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+++F ++ N L+PDVVT+ ++ G C EG+ + A LL ++ G P
Sbjct: 299 DAYELFQQMVANK-LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPT 350
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 57/334 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L+ +L N +T+++L+ GLC R+ EA L + + C P V+T+N++
Sbjct: 96 LVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFC 155
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
A E+MV E C PD++T T +I G CK G + +G P
Sbjct: 156 RARRVDEAHGFMEQMVAEG---CHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTP 212
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D+VT + + D L K G++ +A + E M P TYN+L+ G+
Sbjct: 213 DIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLL 269
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
C DV +Y L++ +CK ++DA L ++M++ N +
Sbjct: 270 GKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVA-----------------NKL 312
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD +T+ +DGL G + +A+++ I C TI T NC++DG CK +++ A +
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ ++ G P+ VTYNI++ G C+ G+ +A
Sbjct: 373 LVADF-RSRGFVPNTVTYNILVAGCCRAGRTDQA 405
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 155/340 (45%), Gaps = 66/340 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G LLG + FTP++VT++++I GLC GR+ +A +F++++ C P IT+N+L
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIG 254
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM---- 108
A+ L +MV++ C PDVVT T ++ CK D + + Q M
Sbjct: 255 GYCRAGDMDEAIRLLGKMVDD---KCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK 311
Query: 109 -RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
PDVVT + D L +G+ME+A LLE + +R GC
Sbjct: 312 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRR---------------------GCPPT 350
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y+YN +++GYCK V A L + S G + TYN L +
Sbjct: 351 IYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNIL-----------------V 393
Query: 228 DGLYKNGFVLEAMKVFSAIGNH--KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
G + G +A++ + + C ++ ++D LC+ GR A + ++Q
Sbjct: 394 AGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR- 452
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P T+ ++ CK Q Q+A+ LL +M + G P
Sbjct: 453 GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 492
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + L +++ + +P++VTF SL+ GLC EGR+ +A L +++ C P + T
Sbjct: 294 MGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT 353
Query: 61 FNTLA-----LVALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
+N + + EE+V +F G + P+ VT ++ G C+ G DQ ++
Sbjct: 354 YNCVVDGYCKANQVRKAEELVADFRSRGFV--PNTVTYNILVAGCCRAG-RTDQALQYLD 410
Query: 110 ----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
V ++ D L +DG+ ++A E MIQR P T+ T++
Sbjct: 411 QLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 465
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 34/215 (15%)
Query: 143 VNPNTCTYNTLMDGFAWWSKGCRH--------------DVYSYNILINGYCKDRNVEDAV 188
+NP T +N ++ G + RH D +Y L++G K R + DAV
Sbjct: 1 MNPGTLLHNVVIGGLCRAGR-LRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAV 59
Query: 189 SLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGL 230
+ +EM+S D TT + ++ + ++ Y+ +DGL
Sbjct: 60 QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K + EA+ + + C T+ T N +I G C+ R+ A ++ G PD
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAE-GCHPD 178
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++TY +I GFCK + LL ++ G P+
Sbjct: 179 IITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPD 213
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 177/357 (49%), Gaps = 53/357 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
+PN+++FN +IK +C G + A +F+++ + C+P+V T+ TL L + +E V
Sbjct: 185 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 244
Query: 77 --NEFGVI-CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
+E + C P VT +I+GLCK G M+ +G P+ VT N + + L
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK+++A LL+ M+ PN TY TL++G + +G + Y
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+Y+ LI+G K+ E+A+ L ++M+ +G + + Y+ L M
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P++ Y++ I G +K G +A++V+ + + CV + LI GLC+ G+L
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484
Query: 272 KIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM--EETGLEPN 325
+ A ++ HML + GL PDVV Y+ MIHG C G + L +M +E+ +P+
Sbjct: 485 REAMMMWTHMLGR--GLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPD 539
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 157/342 (45%), Gaps = 55/342 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68
CF P+ VTFN LI GLC +G ++ +L + + C PN +T+NT+ A
Sbjct: 254 CF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 312
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVM 118
++L + MV C P+ VT +I+GL K G +D +G + + +
Sbjct: 313 VSLLDRMV---ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL 369
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
L K+ K EEA L + M+++ PN Y+ L+DG +KGC
Sbjct: 370 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 429
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ ++Y+ LI G+ K N + A+ + +E MA NN P+ Y+
Sbjct: 430 TPNAFTYSSLIKGFFKTGNSQKAIRVWKE-----------------MAKNNCVPNEICYS 472
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQ 283
I GL ++G + EAM +++ + + + +I GLC G +++ +F ML Q
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 532
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTYNI++ CK+ A LL M + G P+
Sbjct: 533 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 574
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 49/281 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+V +++LI GLC EG++ EA + ++ C PN T+++L + A+ +
Sbjct: 396 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 455
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++EM C P+ + + +I GLC+DG M+ +G+RPDVV + M
Sbjct: 456 WKEMAKNN---CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHG 512
Query: 122 LSKDGKMEEANCLLEVMI--QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L G +E L M+ + D P DV +YNIL+ C
Sbjct: 513 LCNAGSVEVGLKLFNEMLCQESDSQP---------------------DVVTYNILLRALC 551
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN---NVPPDSHVY-TTYIDGLYKNGF 235
K ++ A+ L ML G D T N A+ N P D + + L+K
Sbjct: 552 KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 611
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
++ A K+ + T +I LCK +++ D
Sbjct: 612 IVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIID 652
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHV 222
CR V S+N ++N ++ EG+ A Y N+ P+
Sbjct: 147 CRRTVRSFNSVLN----------------VIIQEGLFHRALEFYECGVGGKTNISPNVLS 190
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ I + K G V A++VF + KC + T L+DGLCK R+ A + M
Sbjct: 191 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE-M 249
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q G P VT+N++I+G CK+G + L+ +M G PN
Sbjct: 250 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPN 292
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 109/359 (30%), Positives = 164/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLALV---------A 68
F P++ T+N L GLC G++ EA RL ++ P+V+T+NTLA A
Sbjct: 305 FEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDA 364
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L L EEM E GV K +VT +I GLCKDG M D G+ PDV+T N +
Sbjct: 365 LRLLEEM-REKGV--KATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTL 421
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
K G + +A L++ M++R + +T T NT++ + +G
Sbjct: 422 IHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGF 481
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
D SY ++ Y K+ N E A+ L EM+ + + +TYNTL ++
Sbjct: 482 MPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAID 541
Query: 216 ---------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ PD Y I K G + A + + + + + TCN L++GLC
Sbjct: 542 KLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLC 601
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A +F ++ G DV+TYN +I CK+G A DME GL+P+
Sbjct: 602 LNGKLDKALKLFESWVEK-GKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPD 659
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 157/357 (43%), Gaps = 52/357 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+P+ VT+N+L+ C +G + EA L ++ P T+NTL A L ++
Sbjct: 235 LSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQAT 294
Query: 77 NEFGVIC----KPDVVTCTNIIDGLCKDGFMMDQGMR------------PDVVTLNVMTD 120
+ +PD+ T + GLC+ G +D+ R PDVVT N + D
Sbjct: 295 KVVEAMTANGFEPDLWTYNVLAAGLCQAG-KVDEAFRLKDEMERLGTLLPDVVTYNTLAD 353
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K +A LLE M ++ V T+N ++ G G
Sbjct: 354 ACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAP 413
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------------AI 213
DV +YN LI+ +CK N+ A +L EM+ G++ D T NT+ +
Sbjct: 414 DVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLL 473
Query: 214 NNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ P PD Y T + +K A++++ + K +I T N LI GL ++
Sbjct: 474 QSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRM 533
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRLK A D + LM+ GL PD TYNI+IH +CKEG + A M E +P+
Sbjct: 534 GRLKEAIDKLNELMEK-GLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPD 589
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + + L+ ++ + T N+++ LC E R EA L + P+ +++
Sbjct: 429 GNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSY 488
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
T+ AL L++EM+ + P + T +I GL + G +
Sbjct: 489 GTVMAAYFKEYNSEPALRLWDEMIEK---KLTPSISTYNTLIKGLSRMGRLKEAIDKLNE 545
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M++G+ PD T N++ K+G +E A M++ P+ T NTLM+G
Sbjct: 546 LMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGK 605
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+W KG + DV +YN LI CKD +V+ A+ +M + G++ DA TYN
Sbjct: 606 LDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNV 665
Query: 209 LFMAI-------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV--- 252
+ A+ + + + ++ L K V EA A + V
Sbjct: 666 VLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENP 725
Query: 253 --LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
E L++GLC G+ K A I +MQ G++ D TY ++ G K +
Sbjct: 726 QDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQK-GMSVDSSTYITLMEGLVKRQKR 781
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 114/288 (39%), Gaps = 46/288 (15%)
Query: 81 VICKPDVVTCTNIIDGLCK----------DGFMMDQGMR--PDVVTLNVMTDNLSKDGKM 128
V +P + ++ L + D F +R P+ T N++ G +
Sbjct: 161 VRVRPSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTL 220
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSK-GCRHDVYSYNIL 174
+A L M ++P+ TYNTL++ A K G +YN L
Sbjct: 221 ADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTL 280
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA-------------------INN 215
++ Y + ++ A + M + G D TYN L +
Sbjct: 281 VSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGT 340
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ PD Y T D +K +A+++ + T+ T N +I GLCK G L+ A
Sbjct: 341 LLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGAL 400
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ M + GL PDV+TYN +IH CK G KA L+ +M GL+
Sbjct: 401 GCLNK-MADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLK 447
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 36/243 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR L ++ P+ T+N +I C EG + A + K+ P+V+T
Sbjct: 533 MGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVT 592
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM 104
NTL AL LFE V + + DV+T +I +CKDG F
Sbjct: 593 CNTLMNGLCLNGKLDKALKLFESWVEKGKKV---DVITYNTLIQTMCKDGDVDTALHFFA 649
Query: 105 D---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
D +G++PD T NV+ LS+ G+ EEA +L + + + + L +
Sbjct: 650 DMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEA 709
Query: 162 KGCR------------HDVYS--YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ + D S Y L+NG C ++A ++ EM+ +G+ D++TY
Sbjct: 710 ESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYI 769
Query: 208 TLF 210
TL
Sbjct: 770 TLM 772
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 167/341 (48%), Gaps = 58/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN V++ L++ LC + +A L + + +V+T+ TL L ++ V
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
G +C+ P+VV ++++ G CK G M ++G+ PDVV + D+L K
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
GK ++A+ ++++M++R + PN TYN +LIN CK+ +V
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYN---------------------VLINCMCKEGSV 271
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINN--------------------VPPDSHVYT 224
++A+ + ++M +G+ D TYNTL +++ V P+ +
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFN 331
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ I GL G + +A +V + + C++ + T N LI GL ++ +++ A ++ M +
Sbjct: 332 SVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE-MTS 390
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD TY+I+I GFCK Q +A LL M + G+EP
Sbjct: 391 LGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPE 431
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 58/369 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+G + S PN+V ++SL++G C GR + ++F +++ +P+V+ + L
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A A + + MV +P+VVT +I+ +CK+G M ++G+ P
Sbjct: 232 KVGKAKKAHGVMDMMVRRG---LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAP 288
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF--------AWW 160
DVVT N + LS +M+EA LLE M++ V PN T+N+++ G A+
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348
Query: 161 SK------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+ GC ++ +YN+LI G + V A+ L EM S G+ D+ TY+ L
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + P+ Y + + + G + A +F+ + N+ L +
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNN-FPLDVV 467
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+ +I G CK G LK A ++ ++ + GLTPD VTY+I+I+ F K G + ANG+L
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ 526
Query: 317 MEETGLEPN 325
M +G P+
Sbjct: 527 MTASGFLPD 535
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D V+ N + L + G + A LL M + P+ CR + S
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAM---SLEPHPA---------------CRPNAVS 117
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y +L+ C DR + AV L R M S G+RAD TY TL +
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ + P+ VY++ + G K+G + KVF + + LID LCK+G+ K
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+++ GL P+VVTYN++I+ CKEG ++A G+L M E G+ P+
Sbjct: 238 KAHGVMDMMVRR-GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 44/214 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
P+ T++ LIKG C ++ A L + +P + + L + A
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERAR 452
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
NLF EM N F + DVV + +I G CK G ++D+G+ PD VT +++
Sbjct: 453 NLFNEMDNNFPL----DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ +K G ME AN +L+ M P DV ++ LI GY
Sbjct: 509 NMFAKSGDMEAANGVLKQMTASGFLP---------------------DVAVFDSLIQGYS 547
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ + L REM+++ I D+ +TL ++
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTLSTSL 581
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 160/354 (45%), Gaps = 54/354 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N V + LI GLC RI EA LF K+ C P V T+ L ALNL
Sbjct: 287 NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLV 346
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
+EM E G+ KP++ T T +ID LC G M+++G+ P+V+T N + +
Sbjct: 347 KEM-EETGI--KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVY 169
K G +E+A ++E+M R ++PNT TYN L+ G+ + DV
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN LI+G C+ N + A L M G+ D TY ++ ++
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P+ +YT IDG K G V EA + + + C+ T N LI GLC G+L
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A + M GL P V T I+IH K+G A M +G +P+
Sbjct: 584 KEA-TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 159/349 (45%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LLG++L PN++T+N+LI G C G I +A + + + PN T+N L
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439
Query: 68 ALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
N+ + M GV+ K PDVVT ++IDG C+ G M D+G+ P
Sbjct: 440 KSNVHKAM----GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D T M D+L K ++EEA L + + Q+ VNPN Y L+DG+
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SK C + ++N LI+G C D +++A L +M+ G++ +T L
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL------- 608
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I L K+G A F + + T I C+ GRL A D
Sbjct: 609 ----------IHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + +N G++PD+ TY+ +I G+ GQ A +L M +TG EP+
Sbjct: 659 MMAKMREN-GVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 167/375 (44%), Gaps = 56/375 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + +I+ + P+ T+ SLI G C + A ++F ++ + C N +
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A++LF +M ++ C P V T T +I LC
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDE---CFPTVRTYTVLIKSLCGSERKSEALNLVK 347
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M + G++P++ T V+ D+L K E+A LL M+++ + PN TYN L++G+
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S+ + +YN LI GYCK NV A+ + +ML + D TYN
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYN 466
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M + PD YT+ ID L K+ V EA +F ++
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG CK G++ A + ++ L P+ +T+N +IHG C +G+ ++
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL-PNSLTFNALIHGLCADGKLKE 585
Query: 310 ANGLLLDMEETGLEP 324
A L M + GL+P
Sbjct: 586 ATLLEEKMVKIGLQP 600
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 155/355 (43%), Gaps = 54/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ T+N ++ G C G + EA + K+ DP+ T+ +L + A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDN 121
F EM + C+ + V T++I GLC D F M D P V T V+ +
Sbjct: 276 FNEMPLKG---CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKS 332
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + EA L++ M + + PN TY L+D KG +
Sbjct: 333 LCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +YN LINGYCK +EDAV + M S + + TYN L
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNK 452
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M V PD Y + IDG ++G A ++ S + + V T +ID LCK R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A D+F L Q G+ P+VV Y +I G+CK G+ +A+ +L M PN
Sbjct: 513 VEEACDLFDSLEQK-GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M++ + P++ T N M + K G +EEAN + +++ ++P+ TY +L+ G+
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGCR + +Y LI+G C R +++A+ L +M + TY
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L ++ + P+ H YT ID L +A ++ +
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + T N LI+G CK G ++ A D+ LM++ L+P+ TYN +I G+CK H KA
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVE-LMESRKLSPNTRTYNELIKGYCKSNVH-KA 446
Query: 311 NGLLLDMEETGLEPN 325
G+L M E + P+
Sbjct: 447 MGVLNKMLERKVLPD 461
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 151/371 (40%), Gaps = 74/371 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
PN+V + +LI G C G++ EA + +K+ C PN +TFN L L L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EE + + G+ +P V T T +I L KDG M+ G +PD T
Sbjct: 590 EEKMVKIGL--QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
++G++ +A ++ M + V+P+ TY++L+ G+ + GC
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 169 YSYNILIN-----GYCKDRNVED-------------AVSLCREMLSEGIRADATTYNTLF 210
+++ LI Y K + E V L +M+ + +A +Y L
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL----------------- 253
+ I V + V D + +N + + VF+A+ + C L
Sbjct: 768 LGICEVG-NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826
Query: 254 ---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+E+C LI GL K G + +F L+Q G D + + I+I G K+G +
Sbjct: 827 HLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC-GYYEDELAWKIIIDGVGKQGLVEAF 885
Query: 311 NGLLLDMEETG 321
L ME+ G
Sbjct: 886 YELFNVMEKNG 896
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 130/365 (35%), Gaps = 102/365 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L ++L PN +TFN+LI GLC +G++ EA L +K+ P V T
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
L L+ F+ + F + KPD T T I C++G ++D
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRE 665
Query: 106 QGMRPDVVTLNVMTDNLSKDG----------KMEEANC-------------LLEVMI--Q 140
G+ PD+ T + + G +M + C LLE+ Q
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQ 725
Query: 141 RDVNPNTCTYNTLMDG---FAWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSLCRE 193
+ P C + +M+ K H V SY LI G C+ N+ A +
Sbjct: 726 KGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDH 785
Query: 194 M-LSEGIRADATTYNTLF-------------------MAINNVPP--------------- 218
M +EGI +N L + + ++P
Sbjct: 786 MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKG 845
Query: 219 -------------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
D + IDG+ K G V ++F+ + + C + +T +
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905
Query: 260 CLIDG 264
LI+G
Sbjct: 906 LLIEG 910
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T ++ L + G V E +V+ + K I T N +++G CK+G ++ A ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL PD TY +I G+C+ A + +M G N
Sbjct: 246 E-AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 167/341 (48%), Gaps = 58/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN V++ L++ LC + +A L + + +V+T+ TL L ++ V
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
G +C+ P+VV ++++ G CK G M ++G+ PDVV + D+L K
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCK 232
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
GK ++A+ ++++M++R + PN TYN +LIN CK+ +V
Sbjct: 233 VGKAKKAHGVMDMMVRRGLEPNVVTYN---------------------VLINCMCKEGSV 271
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINN--------------------VPPDSHVYT 224
++A+ + ++M +G+ D TYNTL +++ V P+ +
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFN 331
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ I GL G + +A +V + + C++ + T N LI GL ++ +++ A ++ M +
Sbjct: 332 SVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDE-MTS 390
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD TY+I+I GFCK Q +A LL M + G+EP
Sbjct: 391 LGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPE 431
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 58/369 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+G + S PN+V ++SL++G C GR + ++F +++ +P+V+ + L
Sbjct: 172 LMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC 231
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A A + + MV +P+VVT +I+ +CK+G M ++G+ P
Sbjct: 232 KVGKAKKAHGVMDMMVRRG---LEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAP 288
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF--------AWW 160
DVVT N + LS +M+EA LLE M++ V PN T+N+++ G A+
Sbjct: 289 DVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348
Query: 161 SK------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+ GC ++ +YN+LI G + V A+ L EM S G+ D+ TY+ L
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFC 408
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + P+ Y + + + G + A +F+ + N+ L +
Sbjct: 409 KMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNN-FPLDVV 467
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+ +I G CK G LK A ++ ++ + GLTPD VTY+I+I+ F K G + ANG+L
Sbjct: 468 AYSTMIHGACKAGDLKTAKELLKSIV-DEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ 526
Query: 317 MEETGLEPN 325
M +G P+
Sbjct: 527 MTASGFLPD 535
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D V+ N + L + G + A LL M + P+ CR + S
Sbjct: 76 DAVSYNTVLTALCRRGHHDRAGALLRAM---SLEPHP---------------ACRPNAVS 117
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y +L+ C DR + AV L R M S G+RAD TY TL +
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ + P+ VY++ + G K+G + KVF + + LID LCK+G+ K
Sbjct: 178 ESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAK 237
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+++ GL P+VVTYN++I+ CKEG ++A G+L M E G+ P+
Sbjct: 238 KAHGVMDMMVRR-GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 44/210 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
P+ T++ LIKG C ++ A L + +P + + L + A
Sbjct: 393 LEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERAR 452
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
NLF EM N F + DVV + +I G CK G ++D+G+ PD VT +++
Sbjct: 453 NLFNEMDNNFPL----DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ +K G ME AN +L+ M P DV ++ LI GY
Sbjct: 509 NMFAKSGDMEAANGVLKQMTASGFLP---------------------DVAVFDSLIQGYS 547
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + L REM+++ I D+ +TL
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTL 577
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 153/324 (47%), Gaps = 28/324 (8%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
+++++ ++IKGL RI EA LF++L C PNV+ + + L+ E+ + F
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166
Query: 80 ----GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
G C P T T +IDGLCK M+ +G PD +T + D SK
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 226
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
KM+EA LL+VM+ + P TY +++ GF C+ D+ + + ++R E
Sbjct: 227 SKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF------CKLDMINEAKEVIAQMRERGCE 280
Query: 186 DAV----SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ SL LS+G RA+ M PD +YT+ ID L+ G V EA
Sbjct: 281 PGLFIFTSLLSYYLSKG-RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 339
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
VF ++ C T +I KIG ++ A +I LM G+ PD YN ++ G+
Sbjct: 340 VFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILE-LMAKSGVGPDCFAYNSLMDGY 398
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
K + +A G+ M +G++PN
Sbjct: 399 VKLERVDQAFGVYDRMVASGIKPN 422
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 155/361 (42%), Gaps = 63/361 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL +L P VT+ S++ G C I EA + ++ C+P + F +L
Sbjct: 235 LLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL 294
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A A + EM C PDV+ T++ID L G M+++G P
Sbjct: 295 SKGRAEEAYQVLTEMTARG---CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAP 351
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D +T + N SK G +E A +LE+M + V P+ YN+LMDG+ +
Sbjct: 352 DALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVY 411
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML-SEGIRADATTYNTLF----- 210
G + + ++N+L++G KD + A SL +EML E + +Y L
Sbjct: 412 DRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGK 471
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + P+ H YT+ I L K G + EA K+ + ++
Sbjct: 472 AGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQA 531
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ LI GL + AWD+F +M+ G P+ VTY ++ GF +A G LD+
Sbjct: 532 YSALITGLIDSSMVDTAWDVFQEMMKR-GCAPNEVTYKVLRRGF-------RAAGRALDL 583
Query: 318 E 318
E
Sbjct: 584 E 584
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 151/373 (40%), Gaps = 50/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + S P T+ +I GLC + +A ++F+++ C P+ IT+
Sbjct: 157 GRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITY 216
Query: 62 NTL--ALVALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCK----------DGFMMD 105
TL + +E V+ +P VT +I+ G CK M +
Sbjct: 217 TTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE 276
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G P + + G+ EEA +L M R P+ Y +L+D
Sbjct: 277 RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPE 336
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ KGC D +Y +I + K NVE A + M G+ D YN+L
Sbjct: 337 ARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMD 396
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA-IGNHKCV 252
M + + P++ + + GL+K+G A +F + +
Sbjct: 397 GYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVP 456
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T+ + LIDGL K GR+ A+ F ++ G+ P+ TY +I+ K G+ +A
Sbjct: 457 PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDR-GIIPECHTYTSLIYSLAKAGRIPEAKK 515
Query: 313 LLLDMEETGLEPN 325
L+ DM + G+ P+
Sbjct: 516 LVEDMVKLGVNPD 528
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 152/393 (38%), Gaps = 89/393 (22%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------AL 66
M C P +V++N++I GL + ++ EA + F + C+P+VI F TL
Sbjct: 1 MGC-EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQ 59
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------------------- 103
V L + + F +PDV T++I G CK G +
Sbjct: 60 VGHKLLNQALKRF----RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVI 115
Query: 104 --------MDQ-----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
+D+ G P+VV + D L K G++E+ E M
Sbjct: 116 KGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCV 175
Query: 145 PNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
P TY ++DG KGC D +Y LI+G+ K +++A L
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
ML++G A TY ++ M P ++T+ +
Sbjct: 236 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLS 295
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G EA +V + + C + LID L GR+ A +F +++ G PD +
Sbjct: 296 KGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEK-GCAPDAL 354
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I F K G + A +L M ++G+ P+
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPD 387
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 40/218 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +NSL+ G R+ +A ++ ++ PN +TFN L A +L
Sbjct: 386 PDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSL 445
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+EM+ + V P +V+ T +IDGL K G M+D+G+ P+ T + +
Sbjct: 446 FKEMLEKEEV--PPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYS 503
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHD 167
L+K G++ EA L+E M++ VNP+ Y+ L+ G AW +GC +
Sbjct: 504 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 563
Query: 168 VYSYNILINGYCKDRNVEDAVSL--CREMLSEGIRADA 203
+Y +L G+ R A+ L ++ S+G+ +A
Sbjct: 564 EVTYKVLRRGF---RAAGRALDLEAVKQHFSQGVAMEA 598
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 166/376 (44%), Gaps = 55/376 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G GR+L + + N+++K LC R +A + L +++ C P+ ++
Sbjct: 23 RPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSY 82
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + AL+L M E GV C PDVVT +I G K+G
Sbjct: 83 AIVLKRLCDDNRSQQALDLLRMMAKEEGV-CSPDVVTYNTVIHGFFKEGKIGKACNLYHE 141
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
MM QG PDVVT N + + L K ++ A LL M+ V PN TY +++ G++
Sbjct: 142 MMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGR 201
Query: 160 WS-----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W +G D+ S+N ++ CK ++A + M ++G R + TY
Sbjct: 202 WEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGI 261
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + + + V+T ID K G + EAM + S +
Sbjct: 262 LLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQG 321
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + LI LC++GRL A D F+ ++ G+ P+ V Y+ +I GFC G KA
Sbjct: 322 LSPDVFTYSTLISALCRMGRLADAVDKFNQMI-GTGVQPNTVVYHSLIQGFCTHGDLVKA 380
Query: 311 NGLLLDMEETGL-EPN 325
L+ +M G+ PN
Sbjct: 381 KELVYEMMNNGIPRPN 396
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 61/355 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
++L + +P++ T+++LI LC GR+ +A F ++ PN + +++L
Sbjct: 310 AMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQ 369
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------G 107
+ A L EM+N I +P++ +I+ +CK+G +MD G
Sbjct: 370 GFCTHGDLVKAKELVYEMMNNG--IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIG 427
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
R D++ N + D G+M +A +L+ MI + P+T TYNT
Sbjct: 428 ERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT--------------- 472
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSHV- 222
L+NGY K ++D ++L REM + I+ TYN LF A V +
Sbjct: 473 ------LVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLH 526
Query: 223 -------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
Y + GL +N EA+ +F + I T N +I+ + +
Sbjct: 527 EMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQ 586
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
R + A D+F + + GL P+ TY IMI KEG ++A+ + ME++G P
Sbjct: 587 RREEAKDLFSAI-SDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAP 640
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 172/360 (47%), Gaps = 60/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN------- 70
+P++VT+N++I G EG+I +A L+ ++ P+V+T N++ AL
Sbjct: 113 SPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAEL 172
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +MV+ GV P+ VT T++I G G M +G+ PD+V+ N D
Sbjct: 173 LLRQMVDN-GV--PPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMD 229
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY--------- 171
+L K G+ +EA + M + PN TY L+ G+A ++GC D+ S+
Sbjct: 230 SLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYA--TEGCFADMMSFFNTMKGDGI 287
Query: 172 -------NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
ILI+ Y K +++A+ + EM +G+ D TY+TL A+
Sbjct: 288 VANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVD 347
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGL 265
V P++ VY + I G +G +++A + V+ + N I N ++ +
Sbjct: 348 KFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSI 407
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK GR+ A IF L+++ G D++ +N +I G+C G+ KA +L M G+ P+
Sbjct: 408 CKEGRVMDAHHIFD-LVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPD 466
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+++Y +++NG C+ R E ++ +L G++AD T NT+
Sbjct: 8 IFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLL 67
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK--CVLTIETCNCLIDGLC 266
M PD+ Y + L + +A+ + + + C + T N +I G
Sbjct: 68 RRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFF 127
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G++ A +++H +MQ G PDVVT+N +I+ CK A LL M + G+ PN
Sbjct: 128 KEGKIGKACNLYHEMMQQ-GFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+A F +L ++ + P+ T+N+L+ G GRI + LF++++ P +T
Sbjct: 448 MGKA---FSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVT 504
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQ 106
+N + + A + EM+ + P T I+ GLC+ + +M Q
Sbjct: 505 YNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLP---TYNIILKGLCRNNCTDEAIVMFQ 561
Query: 107 GM-----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+ + ++ TLN M +++ + EEA L + + PN TY ++
Sbjct: 562 KLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMI 614
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 177/357 (49%), Gaps = 53/357 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
+PN+++FN +IK +C G + A +F+++ + C+P+V T+ TL L + +E V
Sbjct: 169 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 228
Query: 77 --NEFGVI-CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
+E + C P VT +I+GLCK G M+ +G P+ VT N + + L
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK+++A LL+ M+ PN TY TL++G + +G + Y
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+Y+ LI+G K+ E+A+ L ++M+ +G + + Y+ L M
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P++ Y++ I G +K G +A++V+ + + CV + LI GLC+ G+L
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468
Query: 272 KIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM--EETGLEPN 325
+ A ++ HML + GL PDVV Y+ MIHG C G + L +M +E+ +P+
Sbjct: 469 REAMMMWTHMLGR--GLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPD 523
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 157/342 (45%), Gaps = 55/342 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68
CF P+ VTFN LI GLC +G ++ +L + + C PN +T+NT+ A
Sbjct: 238 CF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 296
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVM 118
++L + MV C P+ VT +I+GL K G +D +G + + +
Sbjct: 297 VSLLDRMV---ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTL 353
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
L K+ K EEA L + M+++ PN Y+ L+DG +KGC
Sbjct: 354 ISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGC 413
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ ++Y+ LI G+ K N + A+ + +E MA NN P+ Y+
Sbjct: 414 TPNAFTYSSLIKGFFKTGNSQKAIRVWKE-----------------MAKNNCVPNEICYS 456
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQ 283
I GL ++G + EAM +++ + + + +I GLC G +++ +F ML Q
Sbjct: 457 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 516
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTYNI++ CK+ A LL M + G P+
Sbjct: 517 ESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPD 558
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 49/281 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+V +++LI GLC EG++ EA + ++ C PN T+++L + A+ +
Sbjct: 380 PNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRV 439
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++EM C P+ + + +I GLC+DG M+ +G+RPDVV + M
Sbjct: 440 WKEMAKNN---CVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHG 496
Query: 122 LSKDGKMEEANCLLEVMI--QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L G +E L M+ + D P DV +YNIL+ C
Sbjct: 497 LCNAGSVEVGLKLFNEMLCQESDSQP---------------------DVVTYNILLRALC 535
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN---NVPPDSHVY-TTYIDGLYKNGF 235
K ++ A+ L ML G D T N A+ N P D + + L+K
Sbjct: 536 KQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQR 595
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
++ A K+ + T +I LCK +++ D
Sbjct: 596 IVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIID 636
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHV 222
CR V S+N ++N ++ EG+ A Y N+ P+
Sbjct: 131 CRRTVRSFNSVLN----------------VIIQEGLFHRALEFYECGVGGKTNISPNVLS 174
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ I + K G V A++VF + KC + T L+DGLCK R+ A + M
Sbjct: 175 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDE-M 233
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q G P VT+N++I+G CK+G + L+ +M G PN
Sbjct: 234 QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPN 276
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 159/352 (45%), Gaps = 49/352 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
P+ TF +L++G EG I A R+ ++ C +T N L L E+ +
Sbjct: 213 APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALG 272
Query: 77 ---NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E +PD +T ++GLC++ M+ +G PDV T N++ + L
Sbjct: 273 YIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K+G++EEA +L M+ R P+ T+NTL+ + KG DVY
Sbjct: 333 KNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVY 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++NILIN CK + A+ L EM + G D TYNTL M
Sbjct: 393 TFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDM 452
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P + Y T IDGL K + EA +VF + T N LIDGLCK ++
Sbjct: 453 ESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKI 512
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A+ + + ++ GL P+ +TYN ++ +CK+G +KA +L M G E
Sbjct: 513 DDAFGLINQMISE-GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFE 563
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 161/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++ T+N ++ LC G++ EA + ++ C P++ TFNTL AL N EE ++
Sbjct: 319 PDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDL 378
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ PDV T +I+ LCK G M + G PD VT N + DNL
Sbjct: 379 ARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCS 438
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
GK+ +A LL+ M +T TYNT++DG + G + +
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
+N LI+G CKD+ ++DA L +M+SEG++ + TYN++ M
Sbjct: 499 FNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT 558
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N D Y T I+GL K G A+KV + T + N ++ L + ++
Sbjct: 559 ANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEPN 325
A +F M G PD +TY I+ G C+ G ++A +L+M + G P
Sbjct: 619 DALSLFRE-MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPE 671
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 153/357 (42%), Gaps = 54/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + + F P+ +T+N+ + GLC + A ++ + DP+V T
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N + A + +MV+ C PD+ T +I LC + +
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRG---CLPDITTFNTLIAALCTGNRLEEALDLAR 380
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ PDV T N++ + L K G A L E M P+ TYNTL+D
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +YN +I+G CK +E+A + +M +GI +A T+N
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL K+ + +A + + + + T N ++ CK
Sbjct: 501 TL-----------------IDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCK 543
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G +K A DI + N G DVVTY +I+G CK G+ Q A +L M G+ P
Sbjct: 544 QGDIKKAADILETMTAN-GFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRP 599
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ V +N L+ L ++ ++ ++ P+V+TFNTL A+ +
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + GV PD T T ++ G ++G M++ G VT+NV+ +
Sbjct: 205 EEMSSR-GV--APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGY 261
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G++E+A ++ I P+ TYNT ++G +G DV
Sbjct: 262 CKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
++YNI++N CK+ +E+A + +M+ G D TT+NTL A
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ V PD + + I+ L K G A+++F + N C T N LID LC +G+
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M++ G +TYN +I G CK+ + ++A + M+ G+ N
Sbjct: 442 LGKALDLLKD-MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 495
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 65/231 (28%)
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
+ +T YN L++ SK G + DV ++N L+ C+ V AV
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAV 201
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ EM S G V PD +TT + G + G + A++V + +
Sbjct: 202 LMLEEMSSRG-----------------VAPDETTFTTLMQGFVEEGSIEAALRVKARMLE 244
Query: 249 HKCVLTIETCNCLIDGLCKIGRL------------------KIAWDIF-----------H 279
C T T N LI+G CK+GR+ +I ++ F H
Sbjct: 245 MGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGH 304
Query: 280 ML-----MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L M G PDV TYNI+++ CK GQ ++A G+L M + G P+
Sbjct: 305 ALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPD 355
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 39/161 (24%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L+ +++ PN +T+NS++ C +G I +AA + + +
Sbjct: 515 AFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMT---------------- 558
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
N F V DVVT +I+GLCK G M +GMRP N
Sbjct: 559 ---------ANGFEV----DVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +L + + +A L M + P+ TY + G
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGL 646
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 167/376 (44%), Gaps = 55/376 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R + GF L GR L + +++ N L+K LC R +A L ++ +P+ I++
Sbjct: 134 RPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISY 193
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ + AL+L MV + G C P+VV+ +I G ++G
Sbjct: 194 STVLKSLCEDSRSQRALDLLHTMVKKSGG-CSPNVVSYNTVIHGFFREGEVSKACNLFHE 252
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
MM QG+ PDVVT + D L K M++A +L MI P+ TYN ++ G++
Sbjct: 253 MMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQ 312
Query: 160 WS-----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W +G D+++ N ++ CK ++A M ++G + D TY+
Sbjct: 313 WKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSV 372
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N + D VY ID K G + EAM +F+ +
Sbjct: 373 LLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERG 432
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I ++GRL A D F+ ++ GL PD + YN +I GFC G KA
Sbjct: 433 VMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAM-GLKPDTIVYNSLIQGFCMHGNLVKA 491
Query: 311 NGLLLDMEETGL-EPN 325
L+ +M G+ PN
Sbjct: 492 KELISEMMSRGIPRPN 507
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 152/338 (44%), Gaps = 53/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ T+ ++I GR+ +A F ++ P+ I +N+L + A L
Sbjct: 435 PDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKEL 494
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
EM++ I +P+ V +II+ LCK+G +++ G RPDV+T N + D
Sbjct: 495 ISEMMSRG--IPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDG 552
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
GKME+A +L+ MI + P+ TY+ L+DG+ SKG +
Sbjct: 553 YGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPT 612
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y I+++G D A +C EM+ G D +T + +
Sbjct: 613 TITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGII-----------------L 655
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL +N EA+ +F +G I N +ID + K+ + + A ++F + GL
Sbjct: 656 GGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISAT-GL 714
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ TY +MI KEG ++A+ + ME++G P+
Sbjct: 715 VPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPS 752
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 164/391 (41%), Gaps = 88/391 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L ++ P++VT++S I LC + +A + +++ +P+ +T+
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
N + L ++E F + + PD+ TC + + LCK G M
Sbjct: 301 NCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360
Query: 106 QGMRPDVVT-----------------------------------LNVMTDNLSKDGKMEE 130
+G +PD+VT N++ D K G M+E
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDE 420
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILIN 176
A + M +R V P+ TY T++ F+ + G + D YN LI
Sbjct: 421 AMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQ 480
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G+C N+ A L EM+S GI P++ + + I+ L K G V
Sbjct: 481 GFCMHGNLVKAKELISEMMSRGIPR----------------PNTVFFNSIINSLCKEGRV 524
Query: 237 LEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
+EA +F IG V+T N LIDG +G+++ A+ + ++ + G+ PDVVT
Sbjct: 525 VEAQDIFDLVIHIGERPDVITF---NSLIDGYGLVGKMEKAFGVLDAMI-SVGIEPDVVT 580
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
Y+ ++ G+C+ G+ L +M G++P
Sbjct: 581 YSALLDGYCRNGRIDDGLILFREMLSKGVKP 611
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 36/216 (16%)
Query: 145 PNTCTYNTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSL 190
P CTYN LMD GFA + + G + DV NIL+ C + +DAV++
Sbjct: 117 PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNV 176
Query: 191 CREMLSE-GIRADATTYNTLFMAI--------------------NNVPPDSHVYTTYIDG 229
+ E G+ D +Y+T+ ++ P+ Y T I G
Sbjct: 177 LLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHG 236
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
++ G V +A +F + V + T + ID LCK + A + ++ N G P
Sbjct: 237 FFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISN-GFEP 295
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D VTYN MIHG+ GQ ++ G+ +M GL P+
Sbjct: 296 DKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPD 331
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F +L ++ P++VT+++L+ G C GRI + LF+++ P IT
Sbjct: 556 VGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTIT 615
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ + + A + EM+ + D+ TC I+ GLC++
Sbjct: 616 YGIILHGLFNDGRTVGAKKMCHEMIESGTTM---DISTCGIILGGLCRNNCDDEAIALFK 672
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+ ++ ++ +N M D + K K EEAN L + + + PN TY ++
Sbjct: 673 KLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMI 725
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 49/369 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L R+L P+++T+ LI+ C + + +A +L ++ C P+V+T+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTY 277
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
N L + +E + + C+P+V+T I+ +C G MD
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G P VVT N++ + L + G + A +LE M + PN+ +YN L+ GF
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDR 397
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
S+GC D+ +YN ++ CKD VEDAV + ++ S+G TYNT+
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M ++ PD+ Y++ + GL + G V EA+K F
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRP 517
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N ++ GLCK + A D F + M N G P +Y I+I G EG ++A L
Sbjct: 518 NAVTFNSIMLGLCKTRQTDRAID-FLVYMINRGCKPTETSYTILIEGLAYEGMAKEALEL 576
Query: 314 LLDMEETGL 322
L ++ GL
Sbjct: 577 LNELCNKGL 585
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 169/356 (47%), Gaps = 55/356 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++VT+N++++ LC G++ +A + ++ C P+VIT+ L A+
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM + C PDVVT +++G+CK+G M G +P+V+T N++
Sbjct: 261 LLDEMRDRG---CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ G A GC+
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+ SYN L++G+CK++ ++ A+ M+S G D TYNT+ A+
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P Y T IDGL K G +A+K+ + T + L+ GL +
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G++ A FH + G+ P+ VT+N ++ G CK Q +A L+ M G +P
Sbjct: 498 GKVDEAIKFFHEF-ERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKP 552
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 169/376 (44%), Gaps = 58/376 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ +L + S P+++T+N +I G C G I A + +++V P+V+T
Sbjct: 150 MGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVT 206
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+NT+ A+ + + M+ C PDV+T T +I+ C+D
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRD---CYPDVITYTILIEATCRDSGVGQAMKLLD 263
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---A 158
M D+G PDVVT NV+ + + K+G+++EA L M PN T+N ++
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG 323
Query: 159 WW-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W KG V ++NILIN C+ + A+ + +M G + ++ +YN
Sbjct: 324 RWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYN 383
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M PD Y T + L K+G V +A+++ + + +
Sbjct: 384 PLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSK 443
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C + T N +IDGL K G+ A + M+ L PD +TY+ ++ G +EG+ +
Sbjct: 444 GCSPVLITYNTVIDGLAKAGKTGKAIKLLDE-MRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 310 ANGLLLDMEETGLEPN 325
A + E G+ PN
Sbjct: 503 AIKFFHEFERMGVRPN 518
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 156/362 (43%), Gaps = 69/362 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ +LI+G C G+ +AA++ + L P+VIT+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITY 175
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ-GMRPDVVT 114
N + I G CK G ++D+ + PDVVT
Sbjct: 176 NVM-----------------------------ISGYCKAGEINNALSVLDRMSVSPDVVT 206
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------- 161
N + +L GK+++A +L+ M+QRD P+ TY L++ S
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMR 266
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------- 213
+GC DV +YN+L+NG CK+ +++A+ +M S G + + T+N + ++
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM 326
Query: 214 -----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P + I+ L + G + A+ + + H C + N L+
Sbjct: 327 DAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLL 386
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G CK ++ A + ++ G PD+VTYN M+ CK+G+ + A +L + G
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSR-GCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGC 445
Query: 323 EP 324
P
Sbjct: 446 SP 447
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 119/265 (44%), Gaps = 45/265 (16%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD++ CT +I G C+ G + G PDV+T NVM K G E N
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAG---EINNA 191
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCK 180
L V+ + V+P+ TYNT++ + C DV +Y ILI C+
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR 251
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
D V A+ L EM G D TYN L ++G+ K G + EA+
Sbjct: 252 DSGVGQAMKLLDEMRDRGCTPDVVTYNVL-----------------VNGICKEGRLDEAI 294
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K + + + C + T N ++ +C GR A + +++ G +P VVT+NI+I+
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK-GFSPSVVTFNILINF 353
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C++G +A +L M + G +PN
Sbjct: 354 LCRKGLLGRAIDILEKMPKHGCQPN 378
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 36/237 (15%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
L + G++EE LE M+ P+ TL+ GF K G
Sbjct: 111 QLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVP 170
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
DV +YN++I+GYCK + +A+S+ M + D TYNT+ ++
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ PD YT I+ ++ V +AMK+ + + C + T N L++G+CK
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRL A + M + G P+V+T+NI++ C G+ A LL DM G P+
Sbjct: 288 GRLDEAIKFLND-MPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPS 343
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 163/325 (50%), Gaps = 64/325 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
P+++T+NS+I LC G+++EAA + K ++ C P+++TFNTL AL
Sbjct: 236 VPDVITYNSIIHALCVAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALE 292
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMD----QGMRPDVVTLNVMTD 120
+ EEM E + PDV+T T +++GLC+ G ++++ QG PDV+ + D
Sbjct: 293 VLEEMCRENIL---PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVD 349
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L K G++EEA+ L++ M R GCR V Y+ L++GYC+
Sbjct: 350 GLCKSGEIEEAHKLVKEMSVR---------------------GCRTGVVMYSSLVSGYCR 388
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
NV A RE+L+E ++IN VPP Y + GL K+G + +A+
Sbjct: 389 AGNVHKA----REILAE------------MVSINMVPP-LFTYNIVLGGLIKDGSISKAV 431
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ S + V + T N LIDGLCK R++ A D+ M + G P+ VT ++ G
Sbjct: 432 SLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE-MASRGCFPNDVTLGSVVFG 490
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C+ G+ A L+++M PN
Sbjct: 491 LCRVGRVDDAWSLVVEMSRKRHAPN 515
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 169/353 (47%), Gaps = 54/353 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ ++ ++N L+ L G +++K L C PN++TF L A+ AL
Sbjct: 23 YKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRAL 82
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
F ++EF V PDV +I GL KDG M ++P++VT N +
Sbjct: 83 E-FLRALDEFSV--APDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVI 139
Query: 120 DNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSK--------------G 163
L K G +E+A LLE MI++ P+ TYNTL++ F S+ G
Sbjct: 140 SGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAG 199
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
DV + NIL++G CKD +VE+A+ + M G D TYN++ A+
Sbjct: 200 INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAA 259
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ PD + T +DG K G + A++V + + + T L++GLC++
Sbjct: 260 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 319
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G++++A+ + +++ G PDV+ Y ++ G CK G+ ++A+ L+ +M G
Sbjct: 320 GQVQVAFYLLEEIVRQ-GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG 371
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 121/269 (44%), Gaps = 37/269 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F LL I+ + P+++ + SL+ GLC G I EA +L K+++V C V+
Sbjct: 319 VGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVM 378
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+++L A + EMV+ + P + T ++ GL KDG
Sbjct: 379 YSSLVSGYCRAGNVHKAREILAEMVS---INMVPPLFTYNIVLGGLIKDGSISKAVSLIS 435
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
++ +G PDVVT N + D L K ++ EA L + M R PN T +++ G
Sbjct: 436 DLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVG 495
Query: 159 ----WWS-----KGCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
WS RH +V Y LI+G CK ++DA + M +G+ D Y
Sbjct: 496 RVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYR 555
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
L +++++ + Y D + GF+
Sbjct: 556 KLIVSMSHGGRVAEAMAMY-DEMVARGFL 583
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G + DV + N + D L K G + + ++ +PN T+ L+ G + R
Sbjct: 22 GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81
Query: 167 --------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
DVY +N+LI+G KD N + AV L M S ++ + TYNT+
Sbjct: 82 LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTV--- 138
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI--GNHKCVLTIETCNCLIDGLCKIGR 270
I GL K+G + +A ++ + K I T N LI+ + R
Sbjct: 139 --------------ISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASR 184
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A F M+ G+ PDV+T NI++ G CK+G ++A +L M+ G P+
Sbjct: 185 IREAC-AFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPD 238
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 165/371 (44%), Gaps = 53/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +LGR L S P++VT LI C E + +A +LF ++ C P+V+T+
Sbjct: 195 GKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTY 254
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
N L L F + + +G C+PDV++ I+ LC G MD
Sbjct: 255 NVLIKGFCKGGRLDEAIRFLKKLPSYG--CQPDVISHNMILRSLCSGGRWMDAMKLLATM 312
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+G P VVT N++ + L + G + +A +LE+M + PN+ ++N L+ GF
Sbjct: 313 LRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGI 372
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S+GC D+ +YNIL+ CKD V+DAV + ++ S+G +YNT+
Sbjct: 373 DRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 432
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD T+ + GL + G V EAMK F +
Sbjct: 433 IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAI 492
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
N +I GLCK + +A D F M G P TY +I G EG + A+
Sbjct: 493 RPNAFIYNSIITGLCKSQQTSLAID-FLADMVAKGCKPTEATYTTLIKGITYEGLAEDAS 551
Query: 312 GLLLDMEETGL 322
L ++ GL
Sbjct: 552 KLSNELYSRGL 562
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 169/373 (45%), Gaps = 52/373 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++G + S ++ ++N LI G C G I EA R+ ++ V PN T
Sbjct: 127 IGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGV---SPNAAT 183
Query: 61 FNTL--ALVALNLFEEMVNEFG----VICKPDVVTCTNIIDGLCKDGF----------MM 104
++ + +L ++ + G C PDVVTCT +ID CK+ M
Sbjct: 184 YDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMR 243
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN----TLMDGFAW- 159
++G +PDVVT NV+ K G+++EA L+ + P+ ++N +L G W
Sbjct: 244 NKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWM 303
Query: 160 ---------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KGC V ++NILIN C+ + A+++ M G ++ ++N L
Sbjct: 304 DAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLI 363
Query: 211 MAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
N PD Y + L K+G V +A+ + S + + C
Sbjct: 364 QGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCS 423
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
++ + N +IDGL K+G+ ++A ++ M GL PD++T ++ G +EG+ ++A
Sbjct: 424 PSLISYNTVIDGLLKVGKAELAVELLEE-MCYKGLKPDLITCTSVVGGLSREGKVREAMK 482
Query: 313 LLLDMEETGLEPN 325
++ + PN
Sbjct: 483 FFHYLKRFAIRPN 495
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 120/266 (45%), Gaps = 47/266 (17%)
Query: 85 PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PDV+ CT +I CK G + + G DV + NV+ K G++EEA
Sbjct: 112 PDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEA--- 168
Query: 135 LEVMIQRDVNPNTCTYNTLM---------------DGFAWWSKGCRHDVYSYNILINGYC 179
L V+ + V+PN TY+ ++ G SK C DV + +LI+ C
Sbjct: 169 LRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK-CYPDVVTCTVLIDATC 227
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+ V A+ L EM ++G + D TYN L I G K G + EA
Sbjct: 228 KESGVGQAMKLFNEMRNKGCKPDVVTYNVL-----------------IKGFCKGGRLDEA 270
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
++ + ++ C + + N ++ LC GR A + +++ G P VVT+NI+I+
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK-GCLPSVVTFNILIN 329
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
C++G KA +L M + G PN
Sbjct: 330 FLCQKGLLGKALNVLEMMPKHGHTPN 355
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L ++G++EE + LE M + +P DV + LI +CK
Sbjct: 88 RLIRNGELEEGSRFLEYMTNKGKSP---------------------DVIACTALIREFCK 126
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------NNVPPDSHVYTT 225
++A + + G D T+YN L V P++ Y
Sbjct: 127 IGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDA 186
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ L G + +AM+V KC + TC LID CK + A +F+ M+N
Sbjct: 187 VLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNE-MRNK 245
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVVTYN++I GFCK G+ +A L + G +P+
Sbjct: 246 GCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPD 285
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+A LL + P+++T S++ GL EG++ EA + F L F PN
Sbjct: 439 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFI 498
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
+N++ +A++ +MV + CKP T T +I G+ +G D
Sbjct: 499 YNSIITGLCKSQQTSLAIDFLADMVAKG---CKPTEATYTTLIKGITYEGLAED 549
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 171/397 (43%), Gaps = 84/397 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ R+ PN+ TFN +I LC +G ++EA LF ++ C P+V+T+N+L
Sbjct: 186 LVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 245
Query: 66 -----------------------LVALNLFEEMVNEFGVICK--------------PDVV 88
+V N ++FG I K +VV
Sbjct: 246 KCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVV 305
Query: 89 TCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
T + +D CK+G + + +GM P+ T + D K G++++A LL+ M
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 365
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+ + + PN TY ++DG K G + + Y LI+G+ ++N
Sbjct: 366 VHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNS 425
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVP------------------PDSHVYTTY 226
E A+ L EM ++G+ D + Y TL + V P++ +YTT
Sbjct: 426 ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+D +K G EA+ + I + + T LIDGLCK G + A F M+ G
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDK-MRELG 544
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
L P+V Y +I GFCK G KA L+ +M + G+
Sbjct: 545 LDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMS 581
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 166/366 (45%), Gaps = 55/366 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----- 63
+L+ + S ++VT+N+LI G I +A F ++ NV+T +T
Sbjct: 255 LLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAF 314
Query: 64 ----LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L A+ LF +M G++ P+ T T+++DG CK G M+ QG+
Sbjct: 315 CKEGLVREAMKLFAQM-RVRGMM--PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 371
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
P+VVT VM D L K+GK+ A+ +L +M + V N Y TL+ G
Sbjct: 372 PNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDL 431
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA--- 212
+KG DV Y LI G CK + +++A SL +M G+R + Y T+ A
Sbjct: 432 LNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFK 491
Query: 213 ----------INNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
++ +P P+ Y IDGL K G + EA+ F + ++
Sbjct: 492 AGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQV 551
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LIDG CKIG L A + + M + G++ D V Y +I G K+G Q A L M
Sbjct: 552 YTTLIDGFCKIGSLSKAVHLMNE-MVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610
Query: 318 EETGLE 323
ETGL+
Sbjct: 611 IETGLQ 616
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 148/351 (42%), Gaps = 54/351 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VLL ++ PN+VT+ ++ GLC EG++ A + + N + +
Sbjct: 353 GRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLY 412
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
TL + AL+L EM N+ + DV +I GLCK
Sbjct: 413 TTLIHGHFMNKNSERALDLLNEMKNKG---MELDVSLYGTLIWGLCKVQKLDEAKSLLHK 469
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D G+RP+ V + D K GK EA LL + + PN TY L+DG
Sbjct: 470 MDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGS 529
Query: 158 -----AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ + K G +V Y LI+G+CK ++ AV L EM+ +G+ D
Sbjct: 530 IYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKV---- 585
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
VYT+ IDG K G + A + + + L + C I G C +
Sbjct: 586 -------------VYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNM 632
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ A + ++ G+TPD YN +I + K G ++A+ L +ME
Sbjct: 633 NMMQEARGVLSEMI-GTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 170/367 (46%), Gaps = 56/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L R+ P+++TFNSL+ GLC RI EA + ++ P+ T++ +
Sbjct: 158 LRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLL 217
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
A AL+L+ E + G K D TC+ +++GLCK+G +++ G+
Sbjct: 218 KSDDGAGAALDLYREAI---GKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLV 274
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------AWW 160
P V N + + + G M+ A +E M R + PN +N+++D F W
Sbjct: 275 PGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEW 334
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
KG V +YNILI+GY + + EM G + + +Y +L
Sbjct: 335 VKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCK 394
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M V P++++Y IDG G + EA++ F + + TI T
Sbjct: 395 DGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVT 454
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI GLCK+G+LK A ++F L+ + G PDV+TYN +I G+ G QK L M
Sbjct: 455 YNSLIKGLCKMGKLKEAEEMF-FLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM 513
Query: 318 EETGLEP 324
++ GL+P
Sbjct: 514 KKLGLKP 520
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 145/336 (43%), Gaps = 55/336 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN++++ SLI LC +G+ILEA + + + PN +N L AL
Sbjct: 380 PNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRF 439
Query: 72 FEEMV-NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
F+EM N G +VT ++I GLCK G + G PDV+T N +
Sbjct: 440 FDEMSKNGIGAT----IVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLIS 495
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS---------- 170
S G ++ L E M + + P T++ L+ G + + +++
Sbjct: 496 GYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPD 555
Query: 171 ---YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
YN +I+ Y + +V+ A SL +EM+ G+R D TYN+L +
Sbjct: 556 RVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLIL---------------- 599
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G K G + E + + + +T + LI G C + A+ + +++N G
Sbjct: 600 -GHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLEN-GF 657
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
P+V N + G K+G+ Q+A + +M G++
Sbjct: 658 LPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMD 693
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------N 214
+++ + + ++ + L +EM+ G R D Y +A
Sbjct: 36 MIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRR 95
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
V P+ VY I GL K + +A K+F + V T N LIDG CK G + +A
Sbjct: 96 KVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVA 155
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ + P ++T+N ++ G CK + ++A +L +++ G P+
Sbjct: 156 IGLRER-MKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPD 205
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 171/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + F+PN+V + +LI G C +G I +A LF ++ N T+
Sbjct: 177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + ++E+M E GV P++ T +++ LCKDG
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKM-QEDGVF--PNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M ++G+ ++VT N + L ++ K+ EAN +++ M +NPN TYNTL+DGF
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G + +YNIL++G+C+ + A + +EM GI+ TY
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L F +N+ PD H Y+ I G G + EA ++F ++
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C N +I G CK G A + M+ L P+V +Y MI CKE + ++A
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKE-MEEKELAPNVASYRYMIEVLCKERKSKEA 532
Query: 311 NGLLLDMEETGLEPN 325
L+ M ++G++P+
Sbjct: 533 ERLVEKMIDSGIDPS 547
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 165/355 (46%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +F LIKG C G I ++ L +L F PNV+ + TL A +LF
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM + G++ T T +I+GL K+G M + G+ P++ T N + + L
Sbjct: 222 FEM-GKLGLVANER--TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
KDG+ ++A + + M +R V+ N TYNTL+ G S G ++
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN LI+G+C + A+SLCR++ S G+ TYN L
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + P YT ID ++ + +A+++ ++ V + T + LI G C G+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A +F +++ P+ V YN MI G+CKEG +A LL +MEE L PN
Sbjct: 459 MNEASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 44/253 (17%)
Query: 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC---LLEVMIQRDVNPNTCTYNTLMDG 156
+ ++ Q + + N M DN G + +NC LL ++ + ++N
Sbjct: 102 NSYVQSQSLNLSISYFNEMVDN----GFVPGSNCFNYLLTFVV------GSSSFN----- 146
Query: 157 FAWWS------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
WWS DVYS+ ILI G C+ +E + L E+ G + Y TL
Sbjct: 147 -QWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLI 205
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + + YT I+GL+KNG + +++ +
Sbjct: 206 DGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVF 265
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T NC+++ LCK GR K A+ +F M+ G++ ++VTYN +I G C+E + +AN
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDE-MRERGVSCNIVTYNTLIGGLCREMKLNEANK 324
Query: 313 LLLDMEETGLEPN 325
++ M+ G+ PN
Sbjct: 325 VVDQMKSDGINPN 337
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T+N+LI G C G++ +A L + L P+++T+N L A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM E G+ KP VT T +ID + M + G+ PDV T +V+
Sbjct: 396 VKEM-EERGI--KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------D 167
G+M EA+ L + M++++ PN YNT++ G+ R +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V SY +I CK+R ++A L +M+ GI D +T ++ I+ DSHV
Sbjct: 513 VASYRYMIEVLCKERKSKEAERLVEKMIDSGI--DPST--SILSLISRAKNDSHV 563
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LL +I ++ T ++L+ + S+ + Y ++IN Y + +++ ++S
Sbjct: 58 AQSLLLQVISGKIHSQFFTSSSLLH-YLTESETSKTKFRLYEVIINSYVQSQSLNLSISY 116
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM+ G + +N L + + ++ + + K
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE------------------NKSK 158
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
VL + + LI G C+ G ++ ++D+ L + G +P+VV Y +I G CK+G+ +KA
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTE-FGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL N
Sbjct: 218 KDLFFEMGKLGLVAN 232
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 54/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + FN L+KGLC + R +A + + + C PNV +
Sbjct: 104 GRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFS 163
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ + AL L M ++ G C P+VV+ + +IDGL K G
Sbjct: 164 HTIILKGLCHENRSQEALELLHMMADDGGG-CLPNVVSYSTVIDGLLKGGDPDKAYATYR 222
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ + P+VV + + L K M++A + + M++ V PN TY +L+ GF
Sbjct: 223 EMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSG 282
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G +V +Y+ ++ CK+ +A + M+ G++ D TTY+
Sbjct: 283 QLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYS 342
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M +++ PD +V+ T I K G V EAM VFS +
Sbjct: 343 SLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQ 402
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T + LI+G CKI R++ A +F ++ N G++P+ +TYNIM+ G + G+
Sbjct: 403 GLKPNCVTYSTLINGYCKITRMENALALFQEMVSN-GVSPNFITYNIMLQGLFRTGRTAT 461
Query: 310 ANGLLLDMEETG 321
A + + ++G
Sbjct: 462 AKEFYVQIIKSG 473
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 116/272 (42%), Gaps = 45/272 (16%)
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTC---TNIID-GLCKDGFMMDQGMRPDVV 113
V FN +A ++ V+ +G++ + C +D G G ++ +G R + +
Sbjct: 72 VSRFNRMARAGASMVTPTVHTYGIL-----IGCCCSAGRLDLGFAALGHVVKKGFRVEPI 126
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
N + L D + ++A + ++ G S C +V+S+ I
Sbjct: 127 IFNPLLKGLCADKRTDDA------------------MDIVLRGMTELS--CVPNVFSHTI 166
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
++ G C + ++A+ L M +G P+ Y+T IDGL K
Sbjct: 167 ILKGLCHENRSQEALELLHMMADDG---------------GGCLPNVVSYSTVIDGLLKG 211
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G +A + + + + + + + +I LCK + A ++ +++N G+TP+ T
Sbjct: 212 GDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKN-GVTPNCFT 270
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++HGFC GQ +A L M G+EPN
Sbjct: 271 YTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPN 302
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 166/358 (46%), Gaps = 60/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S F +LG+IL + PN +T +L+KGLC +G + ++ K+ N ++
Sbjct: 100 LGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVS 159
Query: 61 FNTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------ 102
+ TL A+ L + E+ +VV IIDGLCKD
Sbjct: 160 YGTLLNGLCKIGETRCAIKFLRMIEDSSTGL------NVVMYNTIIDGLCKDKLVNEAYD 213
Query: 103 ----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M +G+ P+V+T + G++ A LL MI +++NPN TY L+D
Sbjct: 214 FYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALC 273
Query: 159 WWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
K G DV +Y L++G+CK++N++ A +L +M GI+
Sbjct: 274 KEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQ---- 329
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
P+ + YT IDGL K G + +A K+F + C + + T N +I G
Sbjct: 330 -------------PNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGG 376
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
LCK G L A I M++ G P+VVT+ I+I K+ ++ KA LL +M GL
Sbjct: 377 LCKEGMLDEALAI-KSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 138/331 (41%), Gaps = 58/331 (17%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL 71
G +LM TP +V F ++ L A L K++ V +PN++T N L +N
Sbjct: 42 GMLLMH-HTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNIL----INC 96
Query: 72 F---EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
F +M F V+ G ++ G +P+ +TL + L G++
Sbjct: 97 FCHLGQMSFSFSVL------------------GKILKLGYQPNTITLTTLMKGLCLKGEV 138
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
+++ + ++ + N +Y TL++G + +V YN +
Sbjct: 139 QKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTI 198
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+G CKD+ V +A EM + GI + TY TL I G G
Sbjct: 199 IDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTL-----------------IGGFCLAG 241
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A + + + + T LID LCK G++K A ++ M G DVVTY
Sbjct: 242 QLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAE-MHYRGQPADVVTY 300
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ GFCK KA L + M+E G++PN
Sbjct: 301 TSLLDGFCKNQNLDKATALFMKMKEWGIQPN 331
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 48/243 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +G F LL +++ PN+ T+ LI LC EG++ EA L +++ +V+T+
Sbjct: 241 GQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTY 300
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+L A LF +M E+G+ +P+ T T +IDGLCK G + D
Sbjct: 301 TSLLDGFCKNQNLDKATALFMKM-KEWGI--QPNKYTYTALIDGLCKGGRLKDAQKLFQD 357
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+G DV T NVM L K+G ++EA + I+ + N
Sbjct: 358 LLVKGCCIDVCTYNVMIGGLCKEGMLDEA-----LAIKSKMEDN---------------- 396
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC +V ++ I+I K + A L EM+++G+ F I ++ P +++
Sbjct: 397 GCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGLLRFRN-----FHEIEDLKPTAYL 451
Query: 223 YTT 225
+ +
Sbjct: 452 FAS 454
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 159/354 (44%), Gaps = 52/354 (14%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
S + IL + P++ FN L+ LC E +I EA LF ++ P V++FNT
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
L +N + CK N+ G FMM+ + PDV T +V+ + L
Sbjct: 266 L-----------INGY---CKSG-----NLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K+G++++AN L M R + PN T+ TL++G KG + DV
Sbjct: 307 KEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVI 366
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YN LING CK ++ +A L EM G++ D TY L M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ D+ +T I G + G V+EA + + T +I G CK G +
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K + + MQ G P VVTYN++++G CK+GQ + AN LL M G+ P+
Sbjct: 487 KTGFKLLKE-MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 72/344 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----PN 57
G GF L ++ + P++ T++ LI GLC EG++ +A +LF ++ CD PN
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM----CDRGLVPN 329
Query: 58 VITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------- 101
+TF TL A + + ++++M+ + GV KPDV+T +I+GLCK G
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRK-GV--KPDVITYNTLINGLCKVGDLREAKK 386
Query: 102 ---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M +G++PD T ++ D K+G +E A + + M++
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVK------------------ 428
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+G D ++ LI+G+C++ V +A REML GI+ P
Sbjct: 429 ---EGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK-----------------P 468
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D YT I G K G V K+ + V + T N L++GLCK G++K A ++
Sbjct: 469 DDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA-NML 527
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
M N G+ PD +TYNI++ G CK G + + L E GL
Sbjct: 528 LDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKL---QSEKGL 568
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 39/241 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA G + ++L P+++T+N+LI GLC G + EA +L ++ P+ T+
Sbjct: 344 GRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTY 403
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L AL + +EMV E G+ + D V T +I G C++G
Sbjct: 404 TMLIDGCCKEGDLESALEIRKEMVKE-GI--ELDNVAFTALISGFCREGQVIEAERTLRE 460
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M++ G++PD T ++ K G ++ LL+ M P TYN L++G
Sbjct: 461 MLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A + G D +YNIL+ G+CK N ED L E +G+ D +Y +
Sbjct: 521 MKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQSE---KGLVQDYGSYTS 577
Query: 209 L 209
L
Sbjct: 578 L 578
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 171/357 (47%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + G ++ +PN+VT+ +LI G C +G L+A RLF ++ P V+ +
Sbjct: 172 GRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIY 231
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A ++F M N G++ P++ T ++DG CK
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNS-GML--PNLYTYNTMMDGYCKIAHVKKALELYQE 288
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G+ P+VVT ++ D L K +M A L M V PN YN L+DG+
Sbjct: 289 MLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348
Query: 158 -----AWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ S+ +H DV++Y+ILI G C +E+A L +EM +G +A TYNT
Sbjct: 349 LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNT 408
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L IDG K G + +A++V S + I T + LIDG CK
Sbjct: 409 L-----------------IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKA 451
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+++ A ++ ++ GL PDVV Y +I G K+G ++A L +M+E GL PN
Sbjct: 452 GKMEAAMGLYTEMVIK-GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPN 507
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 153/323 (47%), Gaps = 54/323 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L ++ P +V + LI+GLC E RI EA +F+ + PN+ T+NT+
Sbjct: 212 AFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMD 271
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMDQ---G 107
AL L++EM+ + G++ P+VVT +IDGLCK F++D G
Sbjct: 272 GYCKIAHVKKALELYQEMLGD-GLL--PNVVTFGILIDGLCKTDEMVSARKFLIDMASFG 328
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P++ N + D K G + EA L + + ++ P+ TY+ L+ G
Sbjct: 329 VVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEAD 388
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
KG + +YN LI+GYCK+ N+E A+ +C +M +GI + T++TL
Sbjct: 389 GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGY 448
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M I + PD YT IDG +K+G EA ++ + +
Sbjct: 449 CKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508
Query: 256 ETCNCLIDGLCKIGRLKIAWDIF 278
T +CLIDGLCK GR+ A +F
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLF 531
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 161/352 (45%), Gaps = 61/352 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--A 65
F +L R+ S FTPN+ F LI G + EA ++ K++V P + N +
Sbjct: 113 FNVLSRLESSKFTPNV--FGVLIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDG 167
Query: 66 LVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
LV F+ M +G + P+VVT +IDG C+ G M+++ + P
Sbjct: 168 LVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPT 227
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VV ++ L + ++ EA + M + PN TYNT+MDG
Sbjct: 228 VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDG--------------- 272
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
YCK +V+ A+ L +EML +G+ + T+ L MA
Sbjct: 273 ------YCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V P+ VY IDG K G + EA+ + S I H+ + + T + LI GLC + R++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEE 386
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D M+ G P+ VTYN +I G+CKEG +KA + M E G+EPN
Sbjct: 387 A-DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 159/354 (44%), Gaps = 52/354 (14%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
S + IL + P++ FN L+ LC E +I EA LF ++ P V++FNT
Sbjct: 206 TSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNT 265
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
L +N + CK N+ G FMM+ + PDV T +V+ + L
Sbjct: 266 L-----------INGY---CKSG-----NLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K+G++++AN L M R + PN T+ TL++G KG + DV
Sbjct: 307 KEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVI 366
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YN LING CK ++ +A L EM G++ D TY L M
Sbjct: 367 TYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ D+ +T I G + G V+EA + + T +I G CK G +
Sbjct: 427 VKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDV 486
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K + + MQ G P VVTYN++++G CK+GQ + AN LL M G+ P+
Sbjct: 487 KTGFKLLKE-MQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPD 539
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 152/320 (47%), Gaps = 69/320 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----PN 57
G GF L ++ + P++ T++ LI GLC EG++ +A +LF ++ CD PN
Sbjct: 274 GNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEM----CDRGLVPN 329
Query: 58 VITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------- 101
+TF TL A + + ++++M+ + GV KPDV+T +I+GLCK G
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRK-GV--KPDVITYNTLINGLCKVGDLREAKK 386
Query: 102 ---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M +G++PD T ++ D K+G +E A + + M++
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVK------------------ 428
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+G D ++ LI+G+C++ V +A REML GI+ P
Sbjct: 429 ---EGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK-----------------P 468
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D YT I G K G V K+ + V + T N L++GLCK G++K A ++
Sbjct: 469 DDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNA-NML 527
Query: 279 HMLMQNPGLTPDVVTYNIMI 298
M N G+ PD +TYNI++
Sbjct: 528 LDAMLNLGVVPDDITYNILL 547
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 90/214 (42%), Gaps = 52/214 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA G + ++L P+++T+N+LI GLC G + EA +L ++ P+ T+
Sbjct: 344 GRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTY 403
Query: 62 NTLA---------LVALNLFEEMVNE--------FGVIC--------------------- 83
L AL + +EMV E F +
Sbjct: 404 TMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLE 463
Query: 84 ---KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
KPD T T +I G CK G M G P VVT NV+ + L K G+M+
Sbjct: 464 AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMD-GFAWWSKG 163
AN LL+ M+ V P+ TYN L++ W +G
Sbjct: 524 ANMLLDAMLNLGVVPDDITYNILLERTLQAWKQG 557
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 165/364 (45%), Gaps = 61/364 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ 64
+ RI M PN T+ LI+G + G + A +L +++ + N + TL
Sbjct: 49 MARICM----PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCD 104
Query: 65 ---ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
+ AL F M + C PDV+T T ++ LCK G M+ QG PD
Sbjct: 105 AGRVVEALEHFRAMAKD----CAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPD 160
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VT + + D L K G E+A +LE +IQR + + + T++
Sbjct: 161 TVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVL 220
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+KG V +N++ING+CK ++++ A L M+ +G + T+ L
Sbjct: 221 GVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA 280
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ Y+T I+GL K G V +A ++F + C + T
Sbjct: 281 NRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 340
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDGLCK R++ A ++H M+ G PD++TYN +I G CK Q +A L +
Sbjct: 341 NILIDGLCKAKRIEEARQLYHR-MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIP 399
Query: 319 ETGL 322
E+G+
Sbjct: 400 ESGV 403
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 164/365 (44%), Gaps = 50/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL + S F N V +L+KGLC GR++EA F+ + C P+V+T+ L AL
Sbjct: 79 LLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCA-PDVMTYTALVHALC 137
Query: 68 ALNLFEE---MVNEF-GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
F+E M+ E C PD VT + +IDGLCK G ++ +GM
Sbjct: 138 KAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDA 197
Query: 114 TLNVMTDNL-SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
+ L +K +E A+ +L V+I + P +N +++GF
Sbjct: 198 AFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEV 257
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------- 209
KGC +V+++ ILI G CK V +A L +M+ G + TY+T+
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQ 317
Query: 210 ---------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M N PP+ + IDGL K + EA +++ + C I T N
Sbjct: 318 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 377
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK ++ A+ +F + ++ + VTY+ + HG+ G+ A + + +
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437
Query: 321 GLEPN 325
G P+
Sbjct: 438 GFSPD 442
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 58/343 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEEMV 76
P+++T+NSLI GLC ++ EA +LF+ + N +T++TL AL +
Sbjct: 369 APDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADAC 428
Query: 77 NEFGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
F ++ PD+ T T++I CK M +G P V TL+ + L
Sbjct: 429 RIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGL 488
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD--------------- 167
+ E A L + M R + YN +++G A SK HD
Sbjct: 489 FEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASK---HDKALAVLEQVIDKRDR 545
Query: 168 -----VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+ + L+ C+ +DA L +M G A ++YN L
Sbjct: 546 KFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRL------------- 592
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ GL + EA +VF A+ + I T N +I LC ++ A+++ M
Sbjct: 593 ----LSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQR-M 647
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PD+ T N +I G+CK G+ A LL +M E GLEPN
Sbjct: 648 SKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 690
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 23/179 (12%)
Query: 148 CTYNTLMDGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
C N + A + ++ C + ++Y ILI G+ +++ A+ L EM S G +A
Sbjct: 33 CRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNA 92
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
V+TT + GL G V+EA++ F A+ C + T L+
Sbjct: 93 V-----------------VHTTLMKGLCDAGRVVEALEHFRAMAKD-CAPDVMTYTALVH 134
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
LCK G+ A + ++ G PD VT++ +I G CK G ++A +L D+ + G+
Sbjct: 135 ALCKAGKFDEAQGMLREMVAQ-GCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGM 192
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F P + T ++++ GL A +LF + C + + +N + AL
Sbjct: 474 FPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKAL 533
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ E+++++ P +++ LC+ G M ++G V + N +
Sbjct: 534 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLL 593
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
LS+ + +EA + E M+ P T N ++ +K GC
Sbjct: 594 SGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCC 653
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D+ + N LI GYCK + A L EM G+ + TT++ L
Sbjct: 654 PDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+CNC +D LC++ R + A +F M + P+ TY I+I GF G A LL +
Sbjct: 24 SCNCALDMLCRLNRRQEALALFRNAMARICM-PNKFTYGILIRGFSSAGDLDIAIQLLEE 82
Query: 317 MEETGLEPN 325
M+ +G E N
Sbjct: 83 MKSSGFEGN 91
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 166/372 (44%), Gaps = 53/372 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +VL + ++VTFN +I LC EG++ +A + PNV+T+N
Sbjct: 171 RTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYN 230
Query: 63 TL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
T+ + + +++ GV KPD T + I G+CK+G M
Sbjct: 231 TIIHGYCSRGRVEGARMIFDLMKCRGV--KPDSYTYGSFISGMCKEGKLEEASGMLEKMK 288
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
+ G+RP VT N + D G +E A + M++ + P TYN L+
Sbjct: 289 EIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMD 348
Query: 155 --DGF--AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
DG KG D +YNILINGYC+ NV+ A +L EM+S+GI+ TY +L
Sbjct: 349 EADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLI 408
Query: 211 MAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
++ + PD ++ IDG NG + A + + K V
Sbjct: 409 YVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVV 468
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T N L+ G C+ G+++ A ++ M++ G+ PD ++YN +I G+ K G + A
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEE-MKSRGIKPDHISYNTLISGYSKRGDMKDAFR 527
Query: 313 LLLDMEETGLEP 324
+ +M G P
Sbjct: 528 VRDEMLSIGFNP 539
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 112/231 (48%), Gaps = 36/231 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
P+ VT+N LI G C G + +A L ++ P +T+ +L V A
Sbjct: 362 LVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQAD 421
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVTLNVMT 119
+LFE++V + G+ PD++ +IDG C +G M MDQ + PD VT N +
Sbjct: 422 DLFEKIVRK-GIF--PDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLM 478
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
++GK+E A L+E M R + P+ +YNTL+ G++ S G
Sbjct: 479 QGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFN 538
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ +YN LI G CK+ + A L +EM+S+GI + TY +L I NV
Sbjct: 539 PTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNV 589
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 51/262 (19%)
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLS 123
+M+ GVI P V C +++ K M ++ VVT N+M + L
Sbjct: 145 DMMKGKGVI--PHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLC 202
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
K+GK+++A + +M + PN T YN +I+GYC
Sbjct: 203 KEGKLKKAKEFIGLMEALGIKPNVVT---------------------YNTIIHGYCSRGR 241
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
VE A + M G++ PDS+ Y ++I G+ K G + EA +
Sbjct: 242 VEGARMIFDLMKCRGVK-----------------PDSYTYGSFISGMCKEGKLEEASGML 284
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ T T N LIDG C G L++A+D + M GL P V TYN++IH
Sbjct: 285 EKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD-YRDKMVREGLMPTVSTYNMLIHALFL 343
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+ + +A+G++ +M E GL P+
Sbjct: 344 DCKMDEADGIIKEMSEKGLVPD 365
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y++LI C+ + +DA C +M M V P H +
Sbjct: 124 YDLLIRACCELKRGDDAFE-CFDM----------------MKGKGVIPHVHACNDMLSLF 166
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+ +A +++ + + ++ T N +I+ LCK G+LK A + F LM+ G+ P+
Sbjct: 167 LKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKE-FIGLMEALGIKPN 225
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VVTYN +IHG+C G+ + A + M+ G++P+
Sbjct: 226 VVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPD 260
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 55/322 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
P+++T+NS+I LC GR++EAA + K ++ C P+++TFNTL AL
Sbjct: 202 APDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVTFNTLLDGFCKAGMLPRALE 258
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMD----QGMRPDVVTLNVMTD 120
+ EEM E + PDV+T T +++GLC+ G ++++ QG PDV+ + D
Sbjct: 259 VLEEMCRENIL---PDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVD 315
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L K G++EEA+ L++ M R++ + N + +++YNI++ G K
Sbjct: 316 GLCKSGEIEEAHKLVKEMSAREILAEMVSINMV------------PPLFTYNIVLGGLIK 363
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
D ++ AVSL ++++ G D TYNTL IDGL K V EA
Sbjct: 364 DGSISKAVSLISDLVARGYVPDVVTYNTL-----------------IDGLCKANRVREAC 406
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + + C T ++ GLC++GR+ AW + + M P+VV Y +I G
Sbjct: 407 DLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLV-VEMSRKRHAPNVVVYTSLIDG 465
Query: 301 FCKEGQHQKANGLLLDMEETGL 322
CK + A +L M G+
Sbjct: 466 LCKSDRMDDACVVLDAMRGQGV 487
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 164/372 (44%), Gaps = 64/372 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
+L S +PN+VTF LI+G C G+ A + L+ F P+V FN L
Sbjct: 53 LLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGN 112
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR--PDV 112
A+ LFE M + PD+ T +I GLCK G M+ +G + PD+
Sbjct: 113 PDQAVKLFENMESSR---VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDI 169
Query: 113 VTLNVMTD-NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
VT N + + + KDG +EEA +L+ M P+ TYN+++ +
Sbjct: 170 VTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILK 229
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--- 217
C D+ ++N L++G+CK + A+ + EM E I D TY L + V
Sbjct: 230 TMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQ 289
Query: 218 ---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC---------VL 253
PD YT+ +DGL K+G + EA K+ + + V
Sbjct: 290 VAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVP 349
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T N ++ GL K G + A + L+ G PDVVTYN +I G CK + ++A L
Sbjct: 350 PLFTYNIVLGGLIKDGSISKAVSLISDLVAR-GYVPDVVTYNTLIDGLCKANRVREACDL 408
Query: 314 LLDMEETGLEPN 325
+M G PN
Sbjct: 409 ADEMASLGCFPN 420
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 175/386 (45%), Gaps = 68/386 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A+ L + P++ FN LI GL +G +A +LF+ + +P++ T+
Sbjct: 76 GQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTY 135
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIID-GLCKDGFMMD-----Q 106
NT+ A L EEM+ G PD+VT +I+ G+CKDG + +
Sbjct: 136 NTVISGLCKSGNLEKARELLEEMIRRGGK-SAPDIVTYNTLINAGICKDGDVEEALEILD 194
Query: 107 GMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
GM+ PDV+T N + L G++ EA +L+ M +P+ T+NTL+DGF
Sbjct: 195 GMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAG 251
Query: 158 ------AWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ CR DV +Y IL+NG C+ V+ A L E++ +G D Y
Sbjct: 252 MLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 311
Query: 208 TL----------------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+L ++IN VPP Y + GL K+G + +A
Sbjct: 312 SLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP-LFTYNIVLGGLIKDGSISKA 370
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + S + V + T N LIDGLCK R++ A D+ M + G P+ VT ++
Sbjct: 371 VSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADE-MASLGCFPNDVTLGSVVF 429
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G C+ G+ A L+++M PN
Sbjct: 430 GLCRVGRVDDAWSLVVEMSRKRHAPN 455
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 153/335 (45%), Gaps = 60/335 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ ++ ++N L+ L G +++K L C PN++TF L A AL
Sbjct: 23 YKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRAL 82
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
F ++EF V PDV +I GL KDG M + PD+ T N +
Sbjct: 83 E-FLRALDEFSV--APDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139
Query: 120 DNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
L K G +E+A LLE MI+R P+ TYNTL++ G
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINA--------------------G 179
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------NNVPPDSHV 222
CKD +VE+A+ + M G D TYN++ A+ + PD
Sbjct: 180 ICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVT 239
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ T +DG K G + A++V + + + T L++GLC++G++++A+ + ++
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ G PDV+ Y ++ G CK G+ ++A+ L+ +M
Sbjct: 300 RQ-GYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 333
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 112/289 (38%), Gaps = 74/289 (25%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G + DV + N + D L K G + + ++ +PN T+ L+ G + R
Sbjct: 22 GYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRA 81
Query: 167 -------------------------------------------------DVYSYNILING 177
D+++YN +I+G
Sbjct: 82 LEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISG 141
Query: 178 YCKDRNVEDAVSLCREMLSEGIRA--DATTYNTLF-------------------MAINNV 216
CK N+E A L EM+ G ++ D TYNTL M +
Sbjct: 142 LCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGP 201
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y + I L G V+EA ++ + C + T N L+DG CK G L A +
Sbjct: 202 APDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALE 258
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + + PDV+TY I+++G C+ GQ Q A LL ++ G P+
Sbjct: 259 VLEEMCRE-NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 306
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 39/248 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F LL I+ + P+++ + SL+ GLC G I EA +L K+++ +++
Sbjct: 285 VGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVS 344
Query: 61 FNTL-ALVALNLFEEMVNEFGVICK--------------PDVVTCTNIIDGLCKDGF--- 102
N + L N+ + + G I K PDVVT +IDGLCK
Sbjct: 345 INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVRE 404
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M G P+ VTL + L + G++++A L+ M ++ PN Y +L+D
Sbjct: 405 ACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLID 464
Query: 156 GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G A +G D ++Y LI V +A+++ EM++ G
Sbjct: 465 GLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLP 524
Query: 202 DATTYNTL 209
D +T TL
Sbjct: 525 DGSTSKTL 532
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++ T+N+LI GLC +G ++ A L ++ + C+PNVIT+ L A N+
Sbjct: 12 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+EM + G+ C +I LCKD G M +G +PD+ T N +
Sbjct: 72 LDEMSGK-GLALNAVGYNC--LISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFG 128
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K K EEA L + M+ V NT TYNTL+ F +GC D
Sbjct: 129 LCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLD 188
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+YN LI C+ N+E ++L +M+S+G+ + + N L I
Sbjct: 189 DITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL-----------------I 231
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL + G + A++ + + I T N LI+GLCK GR + A ++F L Q G+
Sbjct: 232 NGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKL-QVEGI 290
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD +TYN +I CKEG A+ LL ++G PN
Sbjct: 291 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPN 328
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 144/289 (49%), Gaps = 43/289 (14%)
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKM 128
V C PD+ T +I GLCK G+++ +G P+V+T ++ D K+G++
Sbjct: 6 LSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRL 65
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EEA +L+ M + + N YN L+ SKGC+ D++++N L
Sbjct: 66 EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 125
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA-------------INNV----- 216
I G CK E+A+ L ++ML EG+ A+ TYNTL A +N++
Sbjct: 126 IFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 185
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P D Y I L + G + + + +F + + +CN LI+GLC+ G ++ A +
Sbjct: 186 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 245
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ GLTPD+VTYN +I+G CK G+ Q+A L ++ G+ P+
Sbjct: 246 FLRDMIHR-GLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 293
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 40/196 (20%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
+L+ N +T+N+LI G + EA +L + C + IT+N L
Sbjct: 145 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGL--------- 195
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+C+ NI GL MM +G+ P+ ++ N++ + L + G ++ A
Sbjct: 196 -----IKALCRAG-----NIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 245
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L MI R + P+ TYN+L++G CK ++A++L +
Sbjct: 246 FLRDMIHRGLTPDIVTYNSLINGL---------------------CKTGRAQEALNLFDK 284
Query: 194 MLSEGIRADATTYNTL 209
+ EGI DA TYNTL
Sbjct: 285 LQVEGICPDAITYNTL 300
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 22/147 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L ++ PN ++ N LI GLC G I A + + P+++T+
Sbjct: 203 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTY 262
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
N+L A ALNLF+++ E IC PD +T +I CK+G
Sbjct: 263 NSLINGLCKTGRAQEALNLFDKLQVE--GIC-PDAITYNTLISWHCKEGMFDDAHLLLSR 319
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKME 129
+D G P+ VT ++ N K+G E
Sbjct: 320 GVDSGFIPNEVTWYILVSNFIKEGDQE 346
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
H M + G PD+ TYN +I G CK+G A L+ +M+ G EPN
Sbjct: 2 HESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPN 48
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 167/359 (46%), Gaps = 55/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + R + F N+ +++++ GR EA ++F+ + C PN+IT
Sbjct: 213 LGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLIT 272
Query: 61 FNTLALV----------ALNLFEEMVNEFGVICKPDVVTCTNII-----DGLCKD----- 100
+NT+ AL++F+EM E GV +PD +T ++I GL +D
Sbjct: 273 YNTIIDACGKGGVDLKQALDIFDEMQKE-GV--EPDRITFNSLIAVCSRGGLWEDSQRVF 329
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-- 158
M +G+ D+ T N + D + K G+ME A ++ M ++++PN TY+T++DG+
Sbjct: 330 AEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKL 389
Query: 159 ------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G R D SYN LI+ Y K +DA+ C++M G++AD TY
Sbjct: 390 GCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTY 449
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N L ID K G +A +F + V + T + LID
Sbjct: 450 NAL-----------------IDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYS 492
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + ++F + GL PDVV Y+ +I CK G + A LL +M + G++PN
Sbjct: 493 KAGMHQDVSNVFTEF-KRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPN 550
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 148/334 (44%), Gaps = 56/334 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN-- 77
++ TFN+LI +C G++ AA + + PNV+T++T+ L FEE ++
Sbjct: 340 DIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLY 399
Query: 78 ----EFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLS 123
E GV +PD V+ +ID K G D G++ DVVT N + D
Sbjct: 400 HDMKESGV--RPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYG 457
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K GK ++A CL + M + PN TY+ L+D ++ + G + DV
Sbjct: 458 KQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVV 517
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
Y+ LI+ CK VEDAV L +EM GI+ + TYN+L A G
Sbjct: 518 LYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAY---------------G 562
Query: 230 LYKNGFVLEAMKV-----FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
Y LEA+K IG + + + G L A +FH MQ
Sbjct: 563 RYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVL-AAVSVFHE-MQQ 620
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL P+VVT++ +++ + Q+A+ LL M
Sbjct: 621 FGLKPNVVTFSAILNACSRCASLQEASVLLEQMR 654
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 129/317 (40%), Gaps = 60/317 (18%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
S P+ V++N+LI GR +A K + +V+T+N L
Sbjct: 405 SGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKD 464
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNV 117
A LF++M E G++ P+V+T + +ID K G D G++PDVV +
Sbjct: 465 AACLFDKMKGE-GLV--PNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSS 521
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN----- 172
+ D+ K G +E+A LL+ M Q + PN TYN+L+D + + + + + N
Sbjct: 522 LIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSV 581
Query: 173 ---------ILINGYCKDRNVED------AVSLCREMLSEGIRADATTYNTLFMAINNVP 217
++ +N D AVS+ EM G++ + T++ + A +
Sbjct: 582 QKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCA 641
Query: 218 P--------------DSHVYTT---YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
D VY + GL + +V EA ++F I N
Sbjct: 642 SLQEASVLLEQMRFFDGWVYGIAHGLLMGLREQVWV-EAQRLFDEISRMDYATGAAFYNA 700
Query: 261 LIDGLCKIGRLKIAWDI 277
L D L G+ + A ++
Sbjct: 701 LTDVLWHFGQRQGAQEV 717
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++V ++++I G EG + +A LFK++ P+ +T++++ A
Sbjct: 216 SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ GV+ P+ T N+I G G M + PDVVTL+++
Sbjct: 276 FLRQMVNK-GVL--PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMG 332
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NPN +Y +++G+A +KGC
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYA--TKGCLVDMTDLFDLMLGDGI 390
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D+Y++N+LI Y ++ A+ + EM G++ D TY T+ A+
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I + +I+ LC
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLC 510
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL P V Y++++ G+C G+ +KA + M G+EPN
Sbjct: 511 KLGRVMDAQNIFDLTV-NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 164/357 (45%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++ TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 391 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 450
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GM D+V + + +
Sbjct: 451 KFNQMIDQ-GV--APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIIN 507
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P Y+ LMDG+ A S G
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH- 221
+ Y L+NGYCK +++ +SL REML +GI+ YN LF A VP
Sbjct: 568 NDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 627
Query: 222 -------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y + GL+KN EA+ +F + + I T N +I G+ +
Sbjct: 628 HEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQT 687
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ GL P VVTY+IMI KEG ++A + M+ G EP+
Sbjct: 688 RRVEEAKDLFASISRS-GLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 61/329 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ I+ + ++V F+S+I LC GR+++A +F P + ++ L
Sbjct: 486 LISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC 545
Query: 66 LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
LV AL +F+ MV+ G+ +P+ V +++G CK G M+ +G++P
Sbjct: 546 LVGKMEKALRVFDAMVSA-GI--EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ N++ D L + G+ A M + + N CT
Sbjct: 603 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT--------------------- 641
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YNI++ G K+R ++A+ L +E+ + ++ + T NT+ I G+
Sbjct: 642 YNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTM-----------------IAGM 684
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++ V EA +F++I V + T + +I L K G ++ A D+F MQN G PD
Sbjct: 685 FQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS-MQNAGCEPD 743
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
N ++ K+ + +A L ++E
Sbjct: 744 SRLLNHVVRELLKKNEIVRAGAYLSKIDE 772
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + +++ +L GK +A+ LL +M A C DV
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMM-------------------AEGGAVCSPDVV 220
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+Y+ +I+G+ K+ +V A L +EM+ GI D TY+++ A+
Sbjct: 221 AYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM 280
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P++ Y I G G EA++VF + H + + T + L+ LCK G++
Sbjct: 281 VNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKI 340
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G P+V +Y IM++G+ +G
Sbjct: 341 KEARDVFDT-MAMKGQNPNVFSYTIMLNGYATKG 373
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L+ G C+ R A
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 212
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 19/184 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR V + S N T+N +++GL EA LFK+L N+IT
Sbjct: 618 GRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 677
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMD 105
NT+ + EE + F I + P VVT + +I L K+G M +
Sbjct: 678 NTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQN 737
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-C 164
G PD LN + L K ++ A L + +R+ + T L+D F+ SKG C
Sbjct: 738 AGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFS--SKGTC 795
Query: 165 RHDV 168
R +
Sbjct: 796 REHI 799
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 57/352 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F PN++T+N +IK LC G+I A F+++ + C+P+V T++TL A+
Sbjct: 170 FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAV 229
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM E C P+ VT +ID L K+G M +G P+ VT N +
Sbjct: 230 FLLDEMQAEG---CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L GK+++A LLE M+ PN TY T+++G + +G +
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 346
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ Y Y+ LI+G K+ E+AV L +EM +G + + Y
Sbjct: 347 ANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDI 406
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M P++ Y++ + G +K G +A+ V+ + + + C+ L++GLC+
Sbjct: 407 LQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCE 466
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GRL+ A ++ HML + GL PDVV Y+ MI G C G K L +M+
Sbjct: 467 SGRLREALTVWTHMLGE--GLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 516
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 87/357 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L+ + + PN VT+N+LI GLC +G++ +A L +K+ C PN +T+
Sbjct: 258 GDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTY 317
Query: 62 NTL--ALVALNLFEEMVN------EFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ LV E+ V+ E G K + +++I GL K+G M
Sbjct: 318 GTIINGLVKQRRAEDGVHILMSMEERGQ--KANEYIYSSLISGLFKEGKSENAVRLWKEM 375
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
++G +P+VV D L +D K +EA +L+ M+ + PN TY++LM GF
Sbjct: 376 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 435
Query: 158 -----AW---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W S+ RH+V ++L+NG C+ + +A+++ ML EG++ D Y+++
Sbjct: 436 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 495
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
I GLC +G
Sbjct: 496 ----------------------------------------------------IKGLCDVG 503
Query: 270 RLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F+ M Q P PDVVTYNI+ + C++ +A LL M + G +P+
Sbjct: 504 SVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 560
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 54/271 (19%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM------DQGMRPDVVT 114
A+N F M N+ CK V + ++++ + ++G F + +G +P+++T
Sbjct: 119 AVNFFHRMANDLH--CKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLT 176
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N++ L K G+++ A M ++ NP DV++Y+ L
Sbjct: 177 YNLIIKALCKLGQIDRAVDTFREMPLKNCNP---------------------DVFTYSTL 215
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+NG CK+R V++AV L EM +EG + T+N L ID L KNG
Sbjct: 216 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVL-----------------IDALSKNG 258
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A K+ + CV T N LI GLC G+L A + ++ + P+ VTY
Sbjct: 259 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQVTY 317
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+G K+ + + +L+ MEE G + N
Sbjct: 318 GTIINGLVKQRRAEDGVHILMSMEERGQKAN 348
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDP--NVIT 60
+L +L F PN T++SL+KG +G +A ++K++ NV CC N +
Sbjct: 406 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 465
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM------------ 108
+ AL ++ M+ E G+ KPDVV +++I GLC G +D+G+
Sbjct: 466 ESGRLREALTVWTHMLGE-GL--KPDVVAYSSMIKGLCDVG-SVDKGLKLFYEMQCQEPK 521
Query: 109 -RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
RPDVVT N++ + L + + A LL M+ +P++ T N ++ +
Sbjct: 522 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDG 581
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ L+ K A+ + EML + + +T++ +
Sbjct: 582 RLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRV 623
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 31/137 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP----N 57
GR + +L P++V ++S+IKGLC G + + +LF ++ C +P +
Sbjct: 468 GRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ--CQEPKSRPD 525
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
V+T+N L F +C+ D T ID L M+D+G PD +T N+
Sbjct: 526 VVTYNIL--------------FNALCRQD--NLTRAIDLL---NSMLDEGCDPDSLTCNI 566
Query: 118 MTDNL------SKDGKM 128
+ L +DG++
Sbjct: 567 FLETLRERINPPQDGRL 583
>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 600
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 177/411 (43%), Gaps = 90/411 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL--------------- 45
+ A GF +LG + P++VTFN+++ GLC EG + +A R
Sbjct: 131 LSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYT 190
Query: 46 --------------------FKKLNVFCCDPNVITF---------NTLALVALNLFEEMV 76
KK+ C+ +V + + + ALNLF +M
Sbjct: 191 CGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFSQMT 250
Query: 77 NEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSKDG 126
G +PD+ T +I GLC K+ MM +G+ PDV T NV+ K G
Sbjct: 251 ---GKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFFKTG 307
Query: 127 KMEEANCLLEVMIQRDVNPNTCTY----------NTLMDGFAWW----SKGCRHDVYSYN 172
+ A + M+ + + TY N + D + SKGC ++ +Y
Sbjct: 308 MISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYT 367
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LI+G+C+ +N+ A+ EM++ G+ + T++TL M +
Sbjct: 368 SLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKH 427
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P+ +DGL+K F EAM +F + L I N ++DG+C G+L A
Sbjct: 428 GQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDA 487
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F L + G+ DVVTYNIMI G CKEG A LL+ MEE G PN
Sbjct: 488 LELFSYL-SSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPN 537
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MA 212
G + V++ NI+IN C+ + S+ M G+ T+NT+ A
Sbjct: 113 GVKPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQA 172
Query: 213 INNV--------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
I V DS+ +GL K G A+ + C L + + ++DG
Sbjct: 173 IRFVDHLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDG 232
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G + A ++F M G+ PD+ TYN +IHG C + ++A LL +M G+ P
Sbjct: 233 LCKDGMVFEALNLFSQ-MTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMP 291
Query: 325 N 325
+
Sbjct: 292 D 292
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 36/221 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++VT+ S+I C ++ +A +F + C PN++T+ +L A+
Sbjct: 327 DVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFL 386
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EMVN G+ P+VVT + +I G+CK G M G P++ T ++ D L
Sbjct: 387 GEMVNN-GL--DPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGL 443
Query: 123 SKDGKMEEANCLLEVMIQRD----------VNPNTCTYNTLMDGFAWWS----KGCRHDV 168
K EA L + + + + C+ L D +S KG + DV
Sbjct: 444 FKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDV 503
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+YNI+I G CK+ ++DA L +M G + TYN
Sbjct: 504 VTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVF 544
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LG ++ + PN+VT+++LI G+C G+ + A LF ++ PN+ T + L
Sbjct: 385 FLGEMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLF 444
Query: 68 ALNLFEEMVNEFGVICKPD----VVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
N E ++ F + K + ++ I+DG+C G ++ +G++ DVV
Sbjct: 445 KCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVV 504
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
T N+M L K+G +++A LL M + PN CTY N+
Sbjct: 505 TYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTY---------------------NV 543
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ G + + + M +G +ADATT
Sbjct: 544 FVQGLLRRYQISKSTKYLMFMKDKGFQADATT 575
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 23/122 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++VT+N +IKGLC EG + +A L K+ C PN T+N G+
Sbjct: 502 DVVTYNIMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQ-------------GL 548
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ + + T + FM D+G + D T + + S + + N LEV +Q+
Sbjct: 549 LRRYQISKSTKYL------MFMKDKGFQADATTTKFLINYFSAN----KENRALEVFLQK 598
Query: 142 DV 143
V
Sbjct: 599 FV 600
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLALV---------A 68
F P++ T+N L GLC G++ EA +L ++ P+V+T+NTL A
Sbjct: 310 FEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDA 369
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
LNL EEM E GV K +VT I+ GLC++G M ++G+ PDV+T N +
Sbjct: 370 LNLLEEM-REKGV--KSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTL 426
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D K G + +A L++ M++ + +T T NTL+ A +G
Sbjct: 427 IDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGF 486
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
D SY ++ Y K+ E A+ L EM+ + +TYNTL ++
Sbjct: 487 VPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAID 546
Query: 216 ---------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ PD Y I K G + +A + + + + + TCN L++GLC
Sbjct: 547 KLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLC 606
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRL+ A +F ++ G DV+TYN +I CK+ A DME GL+P+
Sbjct: 607 LYGRLEKAMKLFESWVEK-GKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPD 664
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 159/350 (45%), Gaps = 53/350 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL R+ P T+N+L+ G I +A + + + F +P++ T+N LA
Sbjct: 265 TLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMR 109
A L +EM + G++ PDVVT ++D K D M ++G++
Sbjct: 325 CQAGKVDEAFKLKDEM-EQLGIVS-PDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVK 382
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAW 159
+VT N++ L ++G++EEA LE+M + + P+ TYNTL+D F
Sbjct: 383 SSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVL 442
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ G + D ++ N L+ CK++ E+A L R G D +Y T+ A
Sbjct: 443 MDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAY-- 500
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+K A+ ++ + K +I T N LI GL +G+L A
Sbjct: 501 ---------------FKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAI 545
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D + LM+ GL PD TYNI+IH +CKEG +KA M E +P+
Sbjct: 546 DKLNELMEM-GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 158/352 (44%), Gaps = 54/352 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R+S LL + ++VT N ++KGLC EG++ EA + + P+VIT+N
Sbjct: 365 RSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYN 424
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
TL A L +EMV G+ K D T ++ LCK+ +
Sbjct: 425 TLIDASCKAGNVAKAFVLMDEMVRS-GL--KMDTFTLNTLLYNLCKEKRYEEAEELLRAP 481
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+G PD V+ + K+ K E A CL + MI+R + P+ TYNTL+ G + K
Sbjct: 482 PQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKL 541
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G D +YNI+I+ YCK+ ++E A +M+ + D T NTL
Sbjct: 542 TEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTL 601
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL G + +AMK+F + + + T N LI LCK
Sbjct: 602 -----------------MNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDN 644
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ A F M+ GL PDV TYN+++ + G+ +A +L + E+G
Sbjct: 645 DVDTALRFF-ADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 133/324 (41%), Gaps = 56/324 (17%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARL--FKKLNVFCCDPNVITFNTLALVALNLFEEM 75
C P++ N+++ L A L F L PN TFN L
Sbjct: 167 CVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTH------- 219
Query: 76 VNEFGVICKPDVVTCTN--IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
C+ + D L M G+ PD VT N + + + G + EA
Sbjct: 220 --------------CSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEART 265
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAW--WSK------------GCRHDVYSYNILINGYC 179
LL M + + P TYNTL+ +A W K G D+++YN+L G C
Sbjct: 266 LLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLC 325
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ V++A L EM GI V PD Y T +D +K +A
Sbjct: 326 QAGKVDEAFKLKDEMEQLGI----------------VSPDVVTYNTLVDACFKCQRSSDA 369
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + ++ T N ++ GLC+ G+L+ A M+ + GLTPDV+TYN +I
Sbjct: 370 LNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEE-GLTPDVITYNTLID 428
Query: 300 GFCKEGQHQKANGLLLDMEETGLE 323
CK G KA L+ +M +GL+
Sbjct: 429 ASCKAGNVAKAFVLMDEMVRSGLK 452
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 150/360 (41%), Gaps = 58/360 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + FVL+ ++ S + T N+L+ LC E R EA L + P+ +++
Sbjct: 434 GNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSY 493
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
T+ AL L++EM+ P + T +I GL G +
Sbjct: 494 GTVMAAYFKEYKPEPALCLWDEMIKR---KLTPSISTYNTLIKGLSTMGKLTEAIDKLNE 550
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G+ PD T N++ K+G +E+A M++ P+ T NTLM+G
Sbjct: 551 LMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGR 610
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+W KG + DV +YN LI CKD +V+ A+ +M G++ D TYN
Sbjct: 611 LEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNV 670
Query: 209 LFMAIN----NVPPDSHVYTTYIDGLYKNGFVLEAMKV----------------FSAIGN 248
L A++ +V ++ G F ++K ++GN
Sbjct: 671 LLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGN 730
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ E+ N I LC G+LK A + +MQ G++ D TY ++ G K + Q
Sbjct: 731 TQGD-DQESYNKYIKELCIGGQLKEAKAVLDEMMQK-GMSVDNSTYITLMEGLIKRQKRQ 788
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 37/243 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + L ++ P+ T+N +I C EG + +A + K+ P+V+T
Sbjct: 538 MGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVT 597
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM 104
NTL A+ LFE V + K DV+T +I LCKD F
Sbjct: 598 CNTLMNGLCLYGRLEKAMKLFESWVEKGK---KVDVITYNTLIQALCKDNDVDTALRFFA 654
Query: 105 D---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
D +G++PDV T NV+ LS+ G+ EA +L + + Y ++
Sbjct: 655 DMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVE 714
Query: 162 KGCRHDVY---------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G +V SYN I C +++A ++ EM+ +G+ D +TY
Sbjct: 715 TGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKGMSVDNSTY 774
Query: 207 NTL 209
TL
Sbjct: 775 ITL 777
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N L+ C G L A MQ GL+PD VTYN +++ C++G +A LL
Sbjct: 211 TFNLLVHTHCSKGTLADALSTLSK-MQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLAR 269
Query: 317 MEETGLEP 324
M++ G+ P
Sbjct: 270 MKKEGIVP 277
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 173/390 (44%), Gaps = 90/390 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA G F +L +P+ T+N+L+ C LEA +F + P++I+F+
Sbjct: 273 RAKGVF---NEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFS 329
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------- 103
+L V AL F +M G++ PD V T +I+G C++G M
Sbjct: 330 SLIGVSSRNGHLDQALMYFRDMKTS-GLV--PDNVIYTILINGYCRNGMMSEALEIRDKM 386
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
++QG DVV N + + L K + +AN L + M++R V P+ CT+ TL+ G
Sbjct: 387 LEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNM 446
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K + D+ +YNILI+G+CK +E A L EM+S I
Sbjct: 447 GKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIF--------- 497
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
P+ Y ++G GFV EA +++ + T+ TCN +I G C+ G
Sbjct: 498 --------PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSG 549
Query: 270 RLKIAWDIFHML----------------------------------MQNPGLTPDVVTYN 295
L A + + M+ GL PDVVTYN
Sbjct: 550 DLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYN 609
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++GFC++G+ Q+A +L M E G++P+
Sbjct: 610 VILNGFCRQGRMQEAELILRKMIERGIDPD 639
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 54/342 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALV 67
S P+ V + LI G C G + EA + K+ C +V+ +NT L
Sbjct: 354 SGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLAD 413
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A LF+EMV E GV+ PD T T +I G CK+G M + ++PD+VT N+
Sbjct: 414 ANALFDEMV-ERGVV--PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNI 470
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKG 163
+ D K +ME+AN L MI R + PN +Y L++G F W KG
Sbjct: 471 LIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG 530
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ + + N +I GYC+ ++ A +M+SEG+ D+ TYNTL
Sbjct: 531 IKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTL-------------- 576
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I+G K ++ +A + + + + T N +++G C+ GR++ A I +++
Sbjct: 577 ---INGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIE 633
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PD TY +I+G+ + ++A +M + G P+
Sbjct: 634 R-GIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 50/356 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG + + I S N+ T N ++ LC + +I + + +++T
Sbjct: 163 MGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVT 222
Query: 61 FNTL-------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+NTL L+ FE M + G KP + T +I+GLCK G M
Sbjct: 223 YNTLINAYCREGLLG-EAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM--------- 154
+ G+ PD T N + ++ EA + M+ R V+P+ ++++L+
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341
Query: 155 -DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++ + G D Y ILINGYC++ + +A+ + +ML +G D YNT+
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL K + +A +F + V T LI G CK G
Sbjct: 402 -----------------LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEG 444
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A +F ++ Q + PD+VTYNI+I GFCK + +KAN L +M + PN
Sbjct: 445 NMGKALSLFGIMTQK-NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPN 499
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 134/314 (42%), Gaps = 78/314 (24%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C +++ GL K G+ + G+ +V TLN+M + L KD K+++ L M
Sbjct: 152 ACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDM 211
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
Q+ + + TYNTL++ + + KG + +++YN +ING CK
Sbjct: 212 EQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRY 271
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF---------------------------------- 210
A + EMLS G+ D TTYNTL
Sbjct: 272 VRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSL 331
Query: 211 -------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + + PD+ +YT I+G +NG + EA+++ + C
Sbjct: 332 IGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGC 391
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L + N +++GLCK L A +F +++ G+ PD T+ +IHG CKEG KA
Sbjct: 392 ALDVVAYNTILNGLCKKKLLADANALFDEMVER-GVVPDFCTFTTLIHGHCKEGNMGKAL 450
Query: 312 GLLLDMEETGLEPN 325
L M + ++P+
Sbjct: 451 SLFGIMTQKNIKPD 464
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 39/235 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+A L G + P++VT+N LI G C + +A L+ ++ PN I+
Sbjct: 446 MGKA---LSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHIS 502
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A L++EM+ + G+ KP +VTC +I G C+ G
Sbjct: 503 YAILVNGYCNLGFVSEAFRLWDEMIRK-GI--KPTLVTCNTVIKGYCRSGDLSKADEFLG 559
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ +G+ PD +T N + + K M++A L+ M + + P+ TYN +++GF
Sbjct: 560 KMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQG 619
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+G D +Y LINGY N+++A EML G D
Sbjct: 620 RMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ + + DA +L M+ + +L + D+ V+ I + + E
Sbjct: 75 RSKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEG 134
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
F + +++I CN L+ GL K+G + +AW++++ + ++ G+ +V T NIM++
Sbjct: 135 TDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARS-GIELNVYTLNIMVN 193
Query: 300 GFCKEGQHQKANGLLLDMEETGL 322
CK+ + L+DME+ G+
Sbjct: 194 ALCKDHKIDDVKPFLIDMEQKGI 216
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 166/352 (47%), Gaps = 57/352 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F PN++T+N +IK LC G+I A F+++ + C+P+V T++TL A+
Sbjct: 194 FQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAV 253
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM E C P+ VT +ID L K+G M +G P+ VT N +
Sbjct: 254 FLLDEMQAEG---CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L GK+++A LLE M+ PN TY T+++G + +G +
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQK 370
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ Y Y+ LI+G K+ E+AV L +EM +G + + Y
Sbjct: 371 ANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDI 430
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M P++ Y++ + G +K G +A+ V+ + + + C+ L++GLC+
Sbjct: 431 LQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCE 490
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GRL+ A ++ HML + GL PDVV Y+ MI G C G K L +M+
Sbjct: 491 SGRLREALTVWTHMLGE--GLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 540
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 87/357 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L+ + + PN VT+N+LI GLC +G++ +A L +K+ C PN +T+
Sbjct: 282 GDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTY 341
Query: 62 NTL--ALVALNLFEEMVN------EFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ LV E+ V+ E G K + +++I GL K+G M
Sbjct: 342 GTIINGLVKQRRAEDGVHILMSMEERGQ--KANEYIYSSLISGLFKEGKSENAVRLWKEM 399
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
++G +P+VV D L +D K +EA +L+ M+ + PN TY++LM GF
Sbjct: 400 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 459
Query: 158 -----AW---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W S+ RH+V ++L+NG C+ + +A+++ ML EG++ D Y+++
Sbjct: 460 QKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSM 519
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
I GLC +G
Sbjct: 520 ----------------------------------------------------IKGLCDVG 527
Query: 270 RLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F+ M Q P PDVVTYNI+ + C++ +A LL M + G +P+
Sbjct: 528 SVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 584
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 54/271 (19%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM------DQGMRPDVVT 114
A+N F M N+ CK V + ++++ + ++G F + +G +P+++T
Sbjct: 143 AVNFFHRMANDLH--CKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLT 200
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N++ L K G+++ A M ++ NP DV++Y+ L
Sbjct: 201 YNLIIKALCKLGQIDRAVDTFREMPLKNCNP---------------------DVFTYSTL 239
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+NG CK+R V++AV L EM +EG + T+N L ID L KNG
Sbjct: 240 MNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVL-----------------IDALSKNG 282
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A K+ + CV T N LI GLC G+L A + ++ + P+ VTY
Sbjct: 283 DLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQVTY 341
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+G K+ + + +L+ MEE G + N
Sbjct: 342 GTIINGLVKQRRAEDGVHILMSMEERGQKAN 372
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 26/222 (11%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDP--NVIT 60
+L +L F PN T++SL+KG +G +A ++K++ NV CC N +
Sbjct: 430 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLC 489
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM------------ 108
+ AL ++ M+ E G+ KPDVV +++I GLC G +D+G+
Sbjct: 490 ESGRLREALTVWTHMLGE-GL--KPDVVAYSSMIKGLCDVG-SVDKGLKLFYEMQCQEPK 545
Query: 109 -RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
RPDVVT N++ + L + + A LL M+ +P++ T N ++ +
Sbjct: 546 SRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDG 605
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ L+ K A+ + EML + + +T++ +
Sbjct: 606 RLFLDELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRV 647
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 31/137 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP----N 57
GR + +L P++V ++S+IKGLC G + + +LF ++ C +P +
Sbjct: 492 GRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ--CQEPKSRPD 549
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
V+T+N L F +C+ D T ID L M+D+G PD +T N+
Sbjct: 550 VVTYNIL--------------FNALCRQD--NLTRAIDLL---NSMLDEGCDPDSLTCNI 590
Query: 118 MTDNL------SKDGKM 128
+ L +DG++
Sbjct: 591 FLETLRERINPPQDGRL 607
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 165/341 (48%), Gaps = 55/341 (16%)
Query: 19 FTPNMVTFNSLIKGLC-TEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
F P ++++N+++ + T+ + A +FK++ PNV T+N L +
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVM 118
L F EM C P+VVT IID CK + F M +G+ P++++ NV+
Sbjct: 223 LXFFGEMERNG---CLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVV 279
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ L ++G+M+E + +LE M +R P+ T+NTL++G+ G
Sbjct: 280 INGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGL 339
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y LIN CK N+ A+ +M G+ P+ YT
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH-----------------PNGRTYT 382
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T IDG + GF+ +A ++ + + TI T N LI+G C +GR++ A + +++
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+Y+ +I GFC+ + +KA L ++M G+ P+
Sbjct: 443 -GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 54/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
F LL + + PN++++N +I GLC EG++ E + + ++++ P+ +TFNTL
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
AL L EMV G+ P+VVT T +I+ +CK G M D+G
Sbjct: 317 GYCNVGNFHQALVLHAEMVKN-GL--SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ T + D S+ G +++A +++ M++ P TYN L++G
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G DV SY+ +I+G+C+++ +E A L EM+++GI D TY++L
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL---- 489
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I GL K + E +F + + T LI+ C G L
Sbjct: 490 -------------IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + ++Q G +PD+VTYN++I+GF K+ + ++A LLL + PN
Sbjct: 537 ALRLHDEMIQK-GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPN 587
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 150/382 (39%), Gaps = 87/382 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL ++ + +PN+VT+ +LI +C G + A ++ PN T
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+ TL IDG + GF M++ G P
Sbjct: 381 YTTL-----------------------------IDGFSQQGFLKQAYQIMKEMVENGFTP 411
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
++T N + + G+ME+A+ LL+ MI+R P+ +Y+T++ GF
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLK 471
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+KG DV +Y+ LI G CK R + + L +EMLS G+ D TY +L
Sbjct: 472 VEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIE 531
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M PD Y I+G K EA ++ + + V T
Sbjct: 532 GDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITY 591
Query: 259 NCLID---------------GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
N LID G C G + A + ++Q G + YN++IHG K
Sbjct: 592 NTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQK-GYKLNEEVYNVIIHGHSK 650
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G +KA L +M +G P+
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPH 672
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 51/253 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL ++ F P++V+++++I G C + +A +L ++ P+V T
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+++L +LF+EM++ G+ PD VT T++I+ C +G
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLS-LGL--PPDEVTYTSLINAYCIEGDLDKALRLHD 542
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------ 155
M+ +G PD+VT NV+ + +K + +EA LL ++ + PN TYNTL+D
Sbjct: 543 EMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE 602
Query: 156 ---------GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
GF + KG + + YN++I+G+ K N+E A +L +
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662
Query: 193 EMLSEGIRADATT 205
EML G + T
Sbjct: 663 EMLHSGFAPHSVT 675
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 158/332 (47%), Gaps = 55/332 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------V 67
S + P++VT+ +LI G C G + +A ++ + C PNV+T+++L
Sbjct: 178 SSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQ 237
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD------GFMMDQGMR----PDVVTLNV 117
AL+LF M ++ C P+VVT T +I GLC +MD+ PD V+ N
Sbjct: 238 ALDLFRRMTSKG---CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------- 162
+ D + G++EEA L + M + P+ TY L+ GF S+
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G DV +Y+I++ GY + + +A +EM++ NV P++
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIA-----------------RNVAPNAVT 397
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y++ IDGL K G V AM+V + N + ++ T N +I LC++G + AW + + M
Sbjct: 398 YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLL-VAM 456
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
GL P +VTY ++ GF + G+ + A L
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELF 488
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 160/359 (44%), Gaps = 57/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P++VT+ S++ GLC +G++ A + +++ + +P+ TF+ L AL
Sbjct: 109 IAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEAL 168
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVM 118
L++E++ KPDVVT T +IDG CK G +++ M+ P+VVT + +
Sbjct: 169 KLYKEILTSSS--WKPDVVTYTALIDGFCKSG-NLEKAMKMLGVMEGRKCVPNVVTYSSL 225
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------C 164
L K G +++A L M + PN TY TL+ G K C
Sbjct: 226 LHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCC 285
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
D SYN L++GYC+ +E+A L +EM ++ D TY L N
Sbjct: 286 PPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARF 345
Query: 216 ----------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ PD Y+ + G + +EA + + T + LIDGL
Sbjct: 346 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 405
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK GR+ A ++ M N + P V T+N +I C+ G +A LL+ M GLEP
Sbjct: 406 CKAGRVDHAMEVLKN-MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP 463
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 152/330 (46%), Gaps = 62/330 (18%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LAL 66
M C P +VT+ +I G C ++ +A F+K+ F PN T+N L
Sbjct: 1 MEC-QPTVVTWTIIIDGFCKANQLKQALACFEKMREFVA-PNERTYNVVVNGLCKARLTS 58
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-----------MDQGMRPDVVTL 115
A + +EM + G PD+VT + +I+G CK G M G+ PDVVT
Sbjct: 59 KAYEVLKEMRD--GKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTY 116
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI 175
+ D L +DGKM+ A ++ M + V P D ++++ LI
Sbjct: 117 TSVVDGLCRDGKMDRACEMVREMKLKGVEP---------------------DKFTFSALI 155
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
G+C R V++A+ L +E+L+ ++ PD YT IDG K+G
Sbjct: 156 TGWCNARKVDEALKLYKEILTS----------------SSWKPDVVTYTALIDGFCKSGN 199
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ +AMK+ + KCV + T + L+ GLCK G L A D+F M + G P+VVTY
Sbjct: 200 LEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR-MTSKGCVPNVVTYT 258
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IHG C + A L+ +M T P+
Sbjct: 259 TLIHGLCAAHKVDAARLLMDEMTATCCPPD 288
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 161/359 (44%), Gaps = 55/359 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---------ALVAL 69
PN T+N ++ GLC +A + K++ + P+++T++T+ A
Sbjct: 38 APNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRAC 97
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
+ EMV G+ PDVVT T+++DGLC+DG M +G+ PD T + +
Sbjct: 98 EILREMVTRDGI--APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALI 155
Query: 120 DNLSKDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
K++EA L E++ P+ TY L+DGF + C
Sbjct: 156 TGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKC 215
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
+V +Y+ L++G CK +++ A+ L R M S+G + TY TL
Sbjct: 216 VPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARL 275
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M PPD+ Y +DG + G + EA ++F + C+ T CL+ G C
Sbjct: 276 LMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFC 335
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RL+ A + + G+ PDVVTY+I++ G+ + + +A + +M + PN
Sbjct: 336 NASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 394
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 152/342 (44%), Gaps = 69/342 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L R+ PN+VT+ +LI GLC ++ A L ++ CC P+ +++N L
Sbjct: 241 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYC 300
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC------KDGFMMD-----QGMR 109
A LF+EM + C PD +T T ++ G C + F+++ G+
Sbjct: 301 RLGRIEEAKQLFKEMATKS---CLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 357
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVVT +++ S+ + EA ++ MI R+V PN TY++L+DG
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL------------ 405
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
CK V+ A+ + + M+++ + T+N++ I
Sbjct: 406 ---------CKAGRVDHAMEVLKNMVNKRVEPSVGTFNSV-----------------IGA 439
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML-------M 282
L + G + EA K+ A+ H + T L++G + GR++IA+++F ++
Sbjct: 440 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSS 499
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L P+ ++ +I G CK + KA ++ ++ EP
Sbjct: 500 SAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEP 540
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 79/297 (26%)
Query: 7 GFVLLGRI-----------LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-C 54
G+ LGRI SC P+ +T+ L++G C R+ EA L + +
Sbjct: 298 GYCRLGRIEEAKQLFKEMATKSCL-PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGI 356
Query: 55 DPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--- 102
DP+V+T++ + + A +EM+ P+ VT +++IDGLCK G
Sbjct: 357 DPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN---VAPNAVTYSSLIDGLCKAGRVDH 413
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M+++ + P V T N + L + G M+EA LL M + P TY TL++
Sbjct: 414 AMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 473
Query: 156 GFAWWSKGCRHDV------------------------YSYNILINGYCKDRNVEDAVSLC 191
GF S+ R ++ +++ LI G CK R ++ A+++
Sbjct: 474 GF---SRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVV 530
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
E+ S P +DGL + G EA K+ ++I
Sbjct: 531 EELRS-----------------RECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISK 570
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 166/349 (47%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++L +PN+ T N I+G C + EA RL + P+VIT+NTL
Sbjct: 238 LLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLC 296
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
+ A + +MVNE +PD T +IIDG CK G M + +G P
Sbjct: 297 KNFKVVEAEHYLRKMVNEG---YEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVP 353
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
D T + + L +DG ++ A + +++ + PN NTL+ G +
Sbjct: 354 DESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLM 413
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GC D+++YN++ING CK V DA +L + +++G D T+NTL
Sbjct: 414 NEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTL------- 466
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
IDG K + A+++ + NH + T N +++GLCK G+ +
Sbjct: 467 ----------IDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMG 516
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F ++M+ G P+++TYNI+ FCK + ++A L+ +M+ GL P+
Sbjct: 517 TFKLMMEK-GCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPD 564
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 106/341 (31%), Positives = 159/341 (46%), Gaps = 55/341 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F P+ T+ SLI GLC +G I A +F + PN++ NTL L AL
Sbjct: 351 FVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQAL 410
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
L EM +E G C PD+ T +I+GLCK G + D +G PDV T N +
Sbjct: 411 KLMNEM-SENG--CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
D K K++ A +++ M V+P+ TYN++++G KGC
Sbjct: 468 DGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCV 527
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
++ +YNIL +CK R VE+A++L EM ++G+ D + TL
Sbjct: 528 PNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTL---------------- 571
Query: 226 YIDGLYKNGFVLEAMKVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ G NG + A ++F + +K TI T N +I+ + +A +F+ + +N
Sbjct: 572 -MKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCEN 630
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD TY +MI GFCK G LL E GL P+
Sbjct: 631 -GFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPS 670
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 163/374 (43%), Gaps = 87/374 (23%)
Query: 36 EGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM------VNEFGVICKPDV 87
+G+I EA +F++++ F C+P+V ++N + LV F++ + + G++ PDV
Sbjct: 89 KGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIV--PDV 146
Query: 88 VTCTNIIDGLCKD------------------------------GF--------------- 102
T T + C+ GF
Sbjct: 147 YTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEE 206
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M+ G+ PD++ N + L + G ++E+ LL +++R V+PN T N + GF +
Sbjct: 207 MLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAM 266
Query: 162 ------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+G DV +YN LI G CK+ V +A R+M++EG D TYN++
Sbjct: 267 LNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSI 326
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
A PD Y + I+GL ++G + A+ VF+
Sbjct: 327 IDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGL 386
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ CN L+ GL + G + A + + + +N G +PD+ TYN++I+G CK G A+
Sbjct: 387 KPNLVLCNTLVKGLSQQGLILQALKLMNEMSEN-GCSPDIWTYNLVINGLCKIGCVSDAD 445
Query: 312 GLLLDMEETGLEPN 325
L++D G P+
Sbjct: 446 NLVIDAIAKGHLPD 459
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 141/327 (43%), Gaps = 54/327 (16%)
Query: 2 GRASGGFVLLGRILMSCFT-----PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G + G +L LM+ + P++ T+N +I GLC G + +A L P
Sbjct: 399 GLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLP 458
Query: 57 NVITFNTL------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
+V TFNTL L N E + + PDV+T +I++GLCK G
Sbjct: 459 DVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTF 518
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
MM++G P+++T N++T++ K K+EEA L+E M + + P+ + TLM GF
Sbjct: 519 KLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDN 578
Query: 158 -----AWW-------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
A+ H + +YNI+IN + N+ A L +M G
Sbjct: 579 GDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGF------ 632
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
PDS+ Y IDG K G + + ++ T +++ L
Sbjct: 633 -----------SPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVV 292
C R+ A I H LM + G+ P+VV
Sbjct: 682 CLKRRVHEAVGIIH-LMVHKGIVPEVV 707
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 98/237 (41%), Gaps = 34/237 (14%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRH 166
N + GK++EA + E M + P+ +YN +M+ + KG
Sbjct: 85 NYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVP 144
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINN-------- 215
DVY++ I + +C+ A L M S+G + A Y T+ F N+
Sbjct: 145 DVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELF 204
Query: 216 -------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ PD + I L + G V E+ ++ + + + T N I G C+
Sbjct: 205 EEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A + + + GLTPDV+TYN +I G CK + +A L M G EP+
Sbjct: 265 AMLNEAIRLLDGVGR--GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPD 319
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 161/357 (45%), Gaps = 56/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VT+NS+I G GR+ + F+++ C+P+VIT+N+L L
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEF 225
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTD 120
+ EM + G+ KP+VV+ + ++D CK+ MM Q ++ P+ T + D
Sbjct: 226 YREM-KQSGL--KPNVVSYSTLVDAFCKED-MMQQAIKFYVDMRRVGHVPNEFTYTSLVD 281
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K G + +A L M++ V N TY L+DG + G
Sbjct: 282 ANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIP 341
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
++ SYN LI+G+ K +N++ A+ L E+ GI+ D Y T
Sbjct: 342 NLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVM 401
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M N + ++ +YTT +D +K+G E + + + +T+ T LIDGLCK
Sbjct: 402 NEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKN 461
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D F + + GL P+ Y MI G CKE Q + A L M + GL P+
Sbjct: 462 KLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPD 518
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P F++L L G + EA + F K+ F P + N L +++F
Sbjct: 61 PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGL-----------LHKFA 109
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
+ K D V KD M+ G +P V T N+M D + K+G +E A L E M
Sbjct: 110 KLGKTDGVK------RFFKD--MIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKF 161
Query: 141 RDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVED 186
R + P+T TYN+++DG+ S C DV +YN LIN +CK +
Sbjct: 162 RGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPK 221
Query: 187 AVSLCREMLSEGIRADATTYNTLFMA-------------------INNVPPDSHVYTTYI 227
+ REM G++ + +Y+TL A + +V P+ YT+ +
Sbjct: 222 GLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHV-PNEFTYTSLV 280
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D K G + +A ++ + + + T LIDGLC R+K A +F ++ G+
Sbjct: 281 DANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMV-TAGV 339
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++ +YN +IHGF K +A LL +++ G++P+
Sbjct: 340 IPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD 377
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 158/357 (44%), Gaps = 51/357 (14%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE 73
MSC P+++T+NSLI C G++ + ++++ PNV++++TL A ++ +
Sbjct: 197 MSC-EPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQ 255
Query: 74 EMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
+ + + + + P+ T T+++D CK D F M++ G+ +VVT +
Sbjct: 256 QAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALI 315
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
D L +M+EA L M+ V PN +YN L+ GF +G +
Sbjct: 316 DGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQ 375
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHV 222
D+ Y I G C +E A + EM GI+A+ Y TL + N H+
Sbjct: 376 PDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHL 435
Query: 223 ---------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLC 266
+ IDGL KN V +A+ F + N + +IDGLC
Sbjct: 436 LEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLC 495
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
K ++K A +F + Q GL PD Y ++ G K+G +A L M E G++
Sbjct: 496 KENQVKAATTLFEQMAQE-GLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMK 551
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 139/350 (39%), Gaps = 88/350 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L N+VT+ +LI GLC R+ EA +LF K+ PN+ +
Sbjct: 286 IGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLAS 345
Query: 61 FNTLA---LVALNLFE--EMVNEF-GVICKPDVVTCTNIIDGLCKDGF------------ 102
+N L + A N+ E++NE G +PD++ I GLC G
Sbjct: 346 YNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLC--GLEKIEAAKVVMNE 403
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M + G++ + + + D K G E LLE M + D T+ L+DG
Sbjct: 404 MQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKL 463
Query: 157 -------FAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F S G + + Y +I+G CK+ V+ A +L +M EG+
Sbjct: 464 VSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGL-------- 515
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD YT+ +DG K G +LEA+ L D + +
Sbjct: 516 ---------VPDRTAYTSLMDGNLKQGNMLEAL-------------------ALRDKMAE 547
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
I G+ D++ Y ++ GF + Q QKA L +M
Sbjct: 548 I-----------------GMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM 580
>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
Length = 676
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 168/375 (44%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F+ + T +++ C +GR + LF ++ PNV+ +
Sbjct: 195 GRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNY 254
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
A ++ EEMV G KP+V T T++IDGLCK G+
Sbjct: 255 TAWVDGLCKRGYVKQAFHVLEEMV---GKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLK 311
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+ +P+V T VM K+GK+ A LL M+++ + PNT TY TL+DG
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGG 371
Query: 157 -----FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F +K G ++Y+YN +I G+CK ++ A + R S+G+ D TY
Sbjct: 372 SFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYT 431
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L MA N+ PD YTT I + + ++ ++F +
Sbjct: 432 MLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSI 491
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V T +T +I G C++G+ A +F ++Q+ G PD +TY +I G CKE + ++
Sbjct: 492 GLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQH-GCLPDPITYGALISGLCKESRLEE 550
Query: 310 ANGLLLDMEETGLEP 324
A L M + + P
Sbjct: 551 ARALFETMLDKHMVP 565
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 138/330 (41%), Gaps = 72/330 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ +F +L+ G C EGR EA AL+A E
Sbjct: 179 PDARSFRALVLGCCQEGRFEEAD---------------------ALLAAMWREGF----- 212
Query: 81 VICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
D TCT ++ C+ G M++ G P+VV D L K G +++
Sbjct: 213 ---SLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQ 269
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HDVYSYNILI 175
A +LE M+ + + PN T+ +L+DG W + R +V++Y ++I
Sbjct: 270 AFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMI 329
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
GYCK+ + A L M+ +G+ P+++ YTT IDG + G
Sbjct: 330 GGYCKEGKLARAEMLLGRMVEQGL-----------------APNTNTYTTLIDGHCRGGS 372
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
A ++ + + + I T N +I G CK G+++ A+ + M GL PD VTY
Sbjct: 373 FDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQ-GLCPDKVTYT 431
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I CK+G A L M E P+
Sbjct: 432 MLITEHCKQGHITYALDLFNQMAENSCHPD 461
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 38/219 (17%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+RPD + + ++G+ EEA+ LL M W +G
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAM---------------------WREGFSL 214
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D + +++ +C+ D L M+ G PP+ YT +
Sbjct: 215 DSATCTVVVRAFCRQGRFRDVPGLFGRMVEMG-----------------NPPNVVNYTAW 257
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL K G+V +A V + + T LIDGLCKIG + A+ +F L+++
Sbjct: 258 VDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSS 317
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+V TY +MI G+CKEG+ +A LL M E GL PN
Sbjct: 318 YKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 127/351 (36%), Gaps = 88/351 (25%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L GR++ PN+V + + + GLC G + +A + +++ PNV T +L
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A LF ++V KP+V T T +I G CK+G M++QG+ P
Sbjct: 298 KIGWTERAFRLFLKLVKSSSY--KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+ T + D + G + A L+ M PN TYN ++ GF
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
S+G D +Y +LI +CK ++ A+ L +M D TY T+
Sbjct: 416 RMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQ 475
Query: 211 -------------MAINNVP----------------------------------PDSHVY 223
++I VP PD Y
Sbjct: 476 RQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITY 535
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
I GL K + EA +F + + V TC L C+ + IA
Sbjct: 536 GALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIA 586
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
T TLF+A N+P + + + EA + + +H L +ET N ++
Sbjct: 97 ATAATLFVARGNLPMAHEAARAMVAAFAETNRLREATDMLLELRSHGLPLVVETANWVLR 156
Query: 264 -GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL + A F + G+ PD ++ ++ G C+EG+ ++A+ LL M G
Sbjct: 157 VGLRQRHHFAHARQAFDGM----GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGF 212
Query: 323 E 323
Sbjct: 213 S 213
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---NVFCCDPN 57
+G+++ + R++ P+ +T+ +LI GLC E R+ EA LF+ + ++ CD
Sbjct: 510 VGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVT 569
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVT-CTNIIDGLCKDGFMMDQGMRPDVVTLN 116
+T + E+ C+ D T + +DGL K R +
Sbjct: 570 CVT--------------LAYEY---CRRDKTTIAVSFLDGLDK---------RQQAHAAD 603
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+ LS ++ A+ L+ ++ + + TY + ++
Sbjct: 604 ALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINS 643
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 52/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM---- 75
++V++N+++KGLC R + L ++ C PN++TFNTL L LFE +
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274
Query: 76 --VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++E G C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 275 AQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+ +EA LL M Q+D + T+N L+D F S GC DV
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y +ING+CK+ +++AV L + M S G + P++ YT + G
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCK-----------------PNTVSYTIVLKG 435
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G ++A ++ S + C T N LI+ LCK G ++ A ++ ++ N G +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN-GCSP 494
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 50/330 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL------FEEMVNEF- 79
N ++ +C +G + EA L +KL F C+ +++++N + L L + EE+++E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV-LKGLCMAKRWGDVEELMDEMV 243
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
V C P++VT +I LC++G M + G PD+ + D + K+G +E
Sbjct: 244 RVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE 303
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFA----W----------WSKGCRHDVYSYNILI 175
AN +L M + PN YNT++ G W + K C D ++NIL+
Sbjct: 304 VANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ +C++ V+ + L +MLS G D TY TT I+G K G
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITY-----------------TTVINGFCKEGL 406
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ EA+ + ++ + C + ++ GLC GR A ++ ++Q G P+ VT+N
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFN 465
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+ CK+G ++A LL M G P+
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPD 495
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
PN TF +++GLCT GRI +A + +++ C P ++ + A F V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
+ C D C +++ +C+ G + + G D+V+ N + L
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWWSK-GCRHDVYS 170
+ + L++ M++ D PN T+NTL+ + A S+ GC D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +I+G CK+ ++E A + M S G++ + YNT+ + GL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV-----------------LKGL 331
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
EA ++ S + C L T N L+D C+ G + ++ ++ + G PD
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH-GCMPD 390
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+TY +I+GFCKEG +A LL M G +PN
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 55/271 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K ++ C PN +++ T+ L L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY-TIVLKGL 436
Query: 70 ----------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L +M+ + C P+ VT +I+ LCK G M+ G
Sbjct: 437 CSAGRWVDAEELMSQMIQQG---CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD+++ + + D L K GK EEA LL VM+ + ++PNT Y+++ + +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
R D YN +I+ CK + A+ M+S G
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCM--------------- 598
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I GL G EA ++ S +
Sbjct: 599 --PNESTYTMLIKGLASEGLAKEAQELLSEL 627
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 56/321 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGVICK 84
+LI+ LC+ GR EAAR V+ +N + A L V
Sbjct: 52 ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108
Query: 85 PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P+ T ++ GLC G + D +G P +V+ + + G + +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
LE M +KGC D + N+++N C+ V++AV L R++
Sbjct: 169 LEAM---------------------HAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G AD +YN + M + P+ + T I L +NG
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+V + + H C I +IDG+CK G L++A +I + M + GL P+VV YN
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR-MPSYGLKPNVVCYNT 326
Query: 297 MIHGFCKEGQHQKANGLLLDM 317
++ G C + ++A LL +M
Sbjct: 327 VLKGLCSAERWKEAEELLSEM 347
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 52/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM---- 75
++V++N+++KGLC R + L ++ C PN++TFNTL L LFE +
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274
Query: 76 --VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++E G C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 275 AQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+ +EA LL M Q+D + T+N L+D F S GC DV
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y +ING+CK+ +++AV L + M S G + P++ YT + G
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCK-----------------PNTVSYTIVLKG 435
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G ++A ++ S + C T N LI+ LCK G ++ A ++ ++ N G +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN-GCSP 494
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 50/330 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL------FEEMVNEF- 79
N ++ +C +G + EA L +KL F C+ +++++N + L L + EE+++E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV-LKGLCMAKRWGDVEELMDEMV 243
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
V C P++VT +I LC++G M + G PD+ + D + K+G +E
Sbjct: 244 RVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE 303
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFA----W----------WSKGCRHDVYSYNILI 175
AN +L M + PN YNT++ G W + K C D ++NIL+
Sbjct: 304 VANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ +C++ V+ + L +MLS G D TY TT I+G K G
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITY-----------------TTVINGFCKEGL 406
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ EA+ + ++ + C + ++ GLC GR A ++ ++Q G P+ VT+N
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFN 465
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+ CK+G ++A LL M G P+
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPD 495
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
PN TF +++GLCT GRI +A + +++ C P ++ + A F V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
+ C D C +++ +C+ G + + G D+V+ N + L
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWWSK-GCRHDVYS 170
+ + L++ M++ D PN T+NTL+ + A S+ GC D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +I+G CK+ ++E A + M S G++ + YNT+ + GL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV-----------------LKGL 331
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
EA ++ S + C L T N L+D C+ G + ++ ++ + G PD
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH-GCMPD 390
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+TY +I+GFCKEG +A LL M G +PN
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 55/271 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K ++ C PN +++ T+ L L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY-TIVLKGL 436
Query: 70 ----------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L +M+ + C P+ VT +I+ LCK G M+ G
Sbjct: 437 CSAGRWVDAEELMSQMIQQG---CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD+++ + + D L K GK EEA LL VM+ + ++PNT Y+++ + +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
R D YN +I+ CK + A+ M+S G
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCM--------------- 598
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I GL G EA ++ S +
Sbjct: 599 --PNESTYTMLIKGLASEGLAKEAQELLSEL 627
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 56/321 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGVICK 84
+LI+ LC+ GR EAAR V+ +N + A L V
Sbjct: 52 ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108
Query: 85 PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P+ T ++ GLC G + D +G P +V+ + + G + +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
LE M +KGC D + N+++N C+ V++AV L R++
Sbjct: 169 LEAM---------------------HAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G AD +YN + M + P+ + T I L +NG
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+V + + H C I +IDG+CK G L++A +I + M + GL P+VV YN
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR-MPSYGLKPNVVCYNT 326
Query: 297 MIHGFCKEGQHQKANGLLLDM 317
++ G C + ++A LL +M
Sbjct: 327 VLKGLCSAERWKEAEELLSEM 347
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 54/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
F LL + + PN++++N +I GLC EG++ E + + ++++ P+ +TFNTL
Sbjct: 257 AFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLIN 316
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
AL L EMV G+ P+VVT T +I+ +CK G M D+G
Sbjct: 317 GYCNVGNFHQALVLHAEMVKN-GL--SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRG 373
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ T + D S+ G +++A +++ M++ P TYN L++G
Sbjct: 374 LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDAS 433
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G DV SY+ +I+G+C+++ +E A L EM+++GI D TY++L
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSL---- 489
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I GL K + E +F + + T LI+ C G L
Sbjct: 490 -------------IQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + ++Q G +PD+VTYN++I+GF K+ + ++A LLL + PN
Sbjct: 537 ALRLHDEMIQK-GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPN 587
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 165/341 (48%), Gaps = 55/341 (16%)
Query: 19 FTPNMVTFNSLIKGLC-TEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
F P ++++N+++ + T+ + A +FK++ PNV T+N L +
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVM 118
L F EM C P+VVT IID CK + F M +G+ P++++ NV+
Sbjct: 223 LFFFGEMERNG---CLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVV 279
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ L ++G+M+E + +LE M +R P+ T+NTL++G+ G
Sbjct: 280 INGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGL 339
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y LIN CK N+ A+ +M G+ P+ YT
Sbjct: 340 SPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLH-----------------PNGRTYT 382
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T IDG + GF+ +A ++ + + TI T N LI+G C +GR++ A + +++
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER 442
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+Y+ +I GFC+ + +KA L ++M G+ P+
Sbjct: 443 -GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 150/382 (39%), Gaps = 87/382 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL ++ + +PN+VT+ +LI +C G + A ++ PN T
Sbjct: 321 VGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+ TL IDG + GF M++ G P
Sbjct: 381 YTTL-----------------------------IDGFSQQGFLKQAYQIMKEMVENGFTP 411
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
++T N + + G+ME+A+ LL+ MI+R P+ +Y+T++ GF
Sbjct: 412 TIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLK 471
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+KG DV +Y+ LI G CK R + + L +EMLS G+ D TY +L
Sbjct: 472 VEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIE 531
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M PD Y I+G K EA ++ + + V T
Sbjct: 532 GDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITY 591
Query: 259 NCLID---------------GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
N LID G C G + A + ++Q G + YN++IHG K
Sbjct: 592 NTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQK-GYKLNEEVYNVIIHGHSK 650
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G +KA L +M +G P+
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPH 672
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 51/253 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL ++ F P++V+++++I G C + +A +L ++ P+V T
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+++L +LF+EM++ G+ PD VT T++I+ C +G
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLS-LGL--PPDEVTYTSLINAYCIEGDLDKALRLHD 542
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------ 155
M+ +G PD+VT NV+ + +K + +EA LL ++ + PN TYNTL+D
Sbjct: 543 EMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLE 602
Query: 156 ---------GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
GF + KG + + YN++I+G+ K N+E A +L +
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYK 662
Query: 193 EMLSEGIRADATT 205
EML G + T
Sbjct: 663 EMLHSGFAPHSVT 675
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 179/360 (49%), Gaps = 55/360 (15%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--------- 66
++C N+ T+NSL+ LC EG++ EA +++K+ P+V+++N + L
Sbjct: 426 VACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMD 485
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
A +F EM+ E G+ KP+++T + ++DG K G M + + P T N
Sbjct: 486 SANGVFVEML-EKGL--KPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCN 542
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCR- 165
++ + L K G+ E+ L+ ++Q P TYN ++DGF A +++ C+
Sbjct: 543 IIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602
Query: 166 ---HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY---------------- 206
+V++Y LING+CK N++ A+ + EM ++GI D T Y
Sbjct: 603 GVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNA 662
Query: 207 NTLFMAINNV--PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ L + V P+ VY++ I G K + A+ + + N ++ LI G
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISG 722
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L K G+L A +++ ++ G+ PD++TY+++IHG C +GQ + A +L DM+ + P
Sbjct: 723 LLKEGKLLFASELYAEMLAK-GIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTP 781
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 47/334 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN VT+ +I+ C G + +A ++ ++ P V N+L + EE
Sbjct: 362 PNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKL 421
Query: 79 F--GVICK-PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKD 125
F V C +V T +++ LCK+G M + +G+RP VV+ N M +
Sbjct: 422 FDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQ 481
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDV----YSY 171
G M+ AN + M+++ + PN TY+ LMDG F + + ++ ++
Sbjct: 482 GDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTC 541
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
NI+ING CK ++ ++++ EG TYN + IDG
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCI-----------------IDGFV 584
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G V A+ V++ + + T LI+G CK + +A + M+N G+ DV
Sbjct: 585 KEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDE-MKNKGIELDV 643
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y +I GFC++G A+ LL +++E GL PN
Sbjct: 644 TVYCALIDGFCRKGDMVNASQLLSELQEVGLSPN 677
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 138/334 (41%), Gaps = 78/334 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L +++ F P +T+N +I G EG + A ++ ++ PNV T+
Sbjct: 552 GRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTY 611
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQ----GMRPD 111
TN+I+G CK M MD+ G+ D
Sbjct: 612 -----------------------------TNLINGFCKSNNMDLALKVMDEMKNKGIELD 642
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
V + D + G M A+ LL + + ++PN Y++++ GF
Sbjct: 643 VTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFR------------- 689
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
K +N+E A+ L + M++EGI D Y TL I GL
Sbjct: 690 --------KLQNMEAALHLHKRMINEGIPCDLQIYTTL-----------------ISGLL 724
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G +L A ++++ + + + T + LI GLC G+L+ A I M +TP V
Sbjct: 725 KEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILED-MDRKCMTPTV 783
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I G KEG Q+A L +M + GL P+
Sbjct: 784 FIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPD 817
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 43/207 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
++ + +LI G C +G ++ A++L +L PN + ++++ AL+L
Sbjct: 642 DVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLH 701
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+ M+NE G+ C D+ T +I GL K+G M+ +G+ PD++T +V+ L
Sbjct: 702 KRMINE-GIPC--DLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGL 758
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
G++E A +LE M ++ + P V+ YN LI G+ K+
Sbjct: 759 CNKGQLENAQKILEDMDRKCMTPT---------------------VFIYNTLITGHFKEG 797
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTL 209
N+++A L EML +G+ D TTY+ L
Sbjct: 798 NLQEAFRLHNEMLDKGLVPDDTTYDIL 824
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 134/324 (41%), Gaps = 68/324 (20%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
T + +I+ EG++ EA F++ + + ++ + ++ AL L E
Sbjct: 225 ATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLRE 284
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
M ++ V P V T +I K G M++ G +VV + K
Sbjct: 285 MRDKGWV---PHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCK 341
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G ++ A L + M + + PN TY +++ W CK+ N+
Sbjct: 342 QGDLDSALELFDKMNENGICPNNVTYAVIIE----WC-----------------CKNGNM 380
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+ A + +M ++ I N+L I G K EA K+F
Sbjct: 381 DKAYEIYNQMKNKDISPTVFNVNSL-----------------IRGYLKARSPEEASKLFD 423
Query: 245 ---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
A G + + T N L+ LCK G++ A I+ +++ G+ P VV+YN MI G
Sbjct: 424 EAVACG----IANVFTYNSLLSWLCKEGKMSEACSIWEKMVRK-GVRPSVVSYNNMILGH 478
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C++G ANG+ ++M E GL+PN
Sbjct: 479 CQQGDMDSANGVFVEMLEKGLKPN 502
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 121/306 (39%), Gaps = 65/306 (21%)
Query: 37 GRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
R++E++R F D V + + V + V+ F + + D+V C +
Sbjct: 139 ARLIESSRRLD----FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTV--- 191
Query: 97 LCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+N+ L K+ + EA RDV YN +
Sbjct: 192 ------------------MNIFLSELVKNNMIREA---------RDV------YNKMA-- 216
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SKG + D + +++I ++ +E+A RE ++G+ DA Y+ + A+
Sbjct: 217 ----SKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKK 272
Query: 217 P------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
P P ++T I K G +LEA+KV + + + +
Sbjct: 273 PDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVA 332
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
L+ G CK G L A ++F + +N G+ P+ VTY ++I CK G KA + M+
Sbjct: 333 TTLMKGYCKQGDLDSALELFDKMNEN-GICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMK 391
Query: 319 ETGLEP 324
+ P
Sbjct: 392 NKDISP 397
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +N L+N Y K + + DAV +N+L ++ P V +
Sbjct: 153 DSRVFNYLLNSYVKTKRINDAVD---------------CFNSLIE--KDIVPCLTVMNIF 195
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ L KN + EA V++ + + T + +I + G+L+ A F +N G
Sbjct: 196 LSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFRE-AKNKG 254
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ D Y+I+I CK+ A GLL +M + G P+
Sbjct: 255 VELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPH 293
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L P+++T++ LI GLC +G++ A ++ + ++ C P V +NTL
Sbjct: 735 LYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTL---IT 791
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
F+E N+ + M+D+G+ PD T +++ + KDG +
Sbjct: 792 GHFKE----------------GNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 172/389 (44%), Gaps = 90/389 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------------- 64
PN+ TFN +I LC EG ++EA LF ++ C P+V+T+N+L
Sbjct: 198 PNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257
Query: 65 -----------------ALV-----------ALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
AL+ A + F EM + GV+ +VVT + +D
Sbjct: 258 VSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQ-GVVA--NVVTFSTFVDA 314
Query: 97 LCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
CK+G + + +GM P+ T + D K G++++A LL+ M+ + + PN
Sbjct: 315 FCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 374
Query: 147 TCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
TY ++DG K G + + Y LI+G+ + N E A+ L
Sbjct: 375 VVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLN 434
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+M ++G+ D + Y TL MA + P++ +YTT +D L+K G
Sbjct: 435 QMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAG 494
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
EA+ + I + + T LIDGLCK G + A F+ M+ GL P+V Y
Sbjct: 495 KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNK-MRELGLDPNVQAY 553
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+I GFCK G KA L+ +M + G+
Sbjct: 554 TALIDGFCKIGSLNKAMHLMNEMIDKGMS 582
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 157/400 (39%), Gaps = 105/400 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + G + N+VTF++ + C EG + EA +LF ++ V PN T+
Sbjct: 284 GRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTY 343
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
T+++DG CK G M+ QG+ P+
Sbjct: 344 -----------------------------TSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 374
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VVT VM D L K+GK+ EA+ +L +M + V N Y TL+ G
Sbjct: 375 VVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLN 434
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
+KG DV Y LI G CKD+ V++A SL +M G+R + Y T+ A+
Sbjct: 435 QMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAG 494
Query: 214 --------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+ P+ Y IDGL K G + EA+ F+ + ++
Sbjct: 495 KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYT 554
Query: 260 CLIDGLCKIGRLKIAWDIFHML----------------------------------MQNP 285
LIDG CKIG L A + + + M
Sbjct: 555 ALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIES 614
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL D+ Y I GFC Q+A G+L +M TG+ P+
Sbjct: 615 GLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 654
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 146/317 (46%), Gaps = 53/317 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-VALNLFEEMVNE- 78
P++V ++L+ L G + +A R ++ PN T N + L +A N +V
Sbjct: 134 PSVV--DTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRL 191
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
F ++ P+V T +ID LCK+G +++ G PDVVT N + D K G +
Sbjct: 192 FDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDL 251
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
EE L+ M GC DV +YN LIN + K +E A
Sbjct: 252 EEVEQLVSEM---------------------RKSGCAADVVTYNALINCFSKFGRMEKAY 290
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
S EM +G+ A+ T ++T++D K G V EAMK+F+ +
Sbjct: 291 SYFGEMKRQGVVANVVT-----------------FSTFVDAFCKEGLVQEAMKLFAQMRV 333
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T L+DG CK GRL A + ++ GL P+VVTY +M+ G CKEG+
Sbjct: 334 RGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ-GLVPNVVTYTVMVDGLCKEGKVA 392
Query: 309 KANGLLLDMEETGLEPN 325
+A+ +L ME G++ N
Sbjct: 393 EADNVLSLMERGGVKAN 409
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 150/351 (42%), Gaps = 54/351 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VLL ++ PN+VT+ ++ GLC EG++ EA + + N + +
Sbjct: 354 GRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLY 413
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL + AL+L +M N+ + DV +I GLCKD
Sbjct: 414 TTLIHGHFMNNNSERALDLLNQMKNKG---MELDVSLYGTLIWGLCKDQKVDEAKSLLHK 470
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
M G+RP+ V + D L K GK EA LL ++ PN TY L+DG
Sbjct: 471 MAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGS 530
Query: 160 WSKGCRH-----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+ H +V +Y LI+G+CK ++ A+ L EM+ +G+ D
Sbjct: 531 ISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKV---- 586
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
VYT+ IDG K + +A + + + L + C I G C +
Sbjct: 587 -------------VYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNM 633
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ A + ++ G+TPD YN +I + K G ++A+ L +ME
Sbjct: 634 NMMQEARGVLSEMI-GTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 58/377 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R++ L ++ PN+ TFN +I LC G++ +A + + + V+ PNV+++N
Sbjct: 203 RSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYN 262
Query: 63 TL------------ALVALNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKD--------- 100
TL A + +EMV NE P++ T +IDG KD
Sbjct: 263 TLIDGYCKLGGNGKMYKADAVLKEMVENE----VSPNLTTFNILIDGFWKDDNLPGSLKV 318
Query: 101 -GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M+DQ + P+V+T N + + L GK+ EA + + M+ V PN TY++L++GF
Sbjct: 319 FKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCK 378
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ +G R YN+LI+ YCK ++D +L EM EGI D T
Sbjct: 379 NGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT 438
Query: 206 YNTLFMAI-----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
YN L + N PD + ++G G +A + +
Sbjct: 439 YNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESRKAAMLLKEMSK 498
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
T N ++ G CK G LK A ++ + + L +V +YN+++ G+ ++G+ +
Sbjct: 499 MGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558
Query: 309 KANGLLLDMEETGLEPN 325
AN LL +M E GL PN
Sbjct: 559 DANMLLNEMLEKGLVPN 575
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 52/351 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
GF R + + ++ L+ L + R + L+K++ PNV TFN +
Sbjct: 172 GFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVIN 231
Query: 65 ---ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG-------------FMMDQG 107
+N +++ + V P+VV+ +IDG CK G M++
Sbjct: 232 ALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENE 291
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P++ T N++ D KD + + + + M+ +DV PN TYN+L++G
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAI 351
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
S G + ++ +Y+ LING+CK+ +++A+ + + +G R
Sbjct: 352 GMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTR------------- 398
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P + +Y ID K G + + + + V + T NCLI GLC+ G ++
Sbjct: 399 ----PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEA 454
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A +F L N GL PD+VT++I++ G+C G+ +KA LL +M + GL+P
Sbjct: 455 AKKLFDQL-TNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKP 503
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 38/239 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + +++ + PN++T++SLI G C G + EA +F + P +
Sbjct: 345 GKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMY 404
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L L EEM E G++ PDV T +I GLC++G
Sbjct: 405 NMLIDAYCKLGKIDDGFALKEEMERE-GIV--PDVGTYNCLIAGLCRNGNIEAAKKLFDQ 461
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ ++G+ PD+VT +++ + G+ +A LL+ M + + P TYN +M G+
Sbjct: 462 LTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGN 520
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ R +V SYN+L+ GY + +EDA L EML +G+ + TY
Sbjct: 521 LKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ GF L + P++ T+N LI GLC G I A +LF +L P+++T
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDLVT 472
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------- 104
F+ L + A L +EM ++ G+ KP +T ++ G CK+G +
Sbjct: 473 FHILMEGYCSRGESRKAAMLLKEM-SKMGL--KPRHLTYNIMMKGYCKEGNLKAATNMRT 529
Query: 105 ----DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ +R +V + NV+ S+ GK+E+AN LL M+++ + PN TY + +
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE 584
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 29/189 (15%)
Query: 165 RHDVYSYNI-------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
R Y Y + L+ K D L +EM+ I+ + T+N +
Sbjct: 178 RSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTG 237
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYK---NGFVLEAMKVFSAIGNHKCVLTIE 256
M + P+ Y T IDG K NG + +A V + ++ +
Sbjct: 238 KMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLT 297
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N LIDG K L + +F ++ + + P+V+TYN +I+G C G+ +A G+
Sbjct: 298 TFNILIDGFWKDDNLPGSLKVFKEML-DQDVIPNVITYNSLINGLCNGGKINEAIGMRDK 356
Query: 317 MEETGLEPN 325
M G++PN
Sbjct: 357 MVSAGVQPN 365
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 231 YKNGFVLE-AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
Y N E + F G + L+ +C L+ L K R ++ +++ + P
Sbjct: 163 YANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRK-IQP 221
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V T+N++I+ CK G+ KA ++ DM+ G PN
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPN 257
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 153/344 (44%), Gaps = 52/344 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
+L + P FN L++ + G++ A +F ++ P V+TFNTL
Sbjct: 105 LLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL--------- 155
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+CK + N + GL M G+ PDV T L K G++++A
Sbjct: 156 -----MSGMCKASDLNNANALRGL-----MAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 205
Query: 134 LLEVMIQRDVNPNTCTYNTLMDG------------FAW--WSKGCRHDVYSYNILINGYC 179
+ E M +R +NPNT TL+D W ++G + D+ +YN L+NG+C
Sbjct: 206 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFC 265
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+ R+++ A + EM +G++ D TY TL M+ V D
Sbjct: 266 RVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDV 325
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT I GL K G ++A ++ + T +ID CK G +K +
Sbjct: 326 TYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKE- 384
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQN G P +VTYN++++GFC GQ + A+ LL M G+ PN
Sbjct: 385 MQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 428
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 53/279 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + PN V +LI C EG + L ++ +++ +
Sbjct: 198 GRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 257
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A ++ EEM + KPD VT T +IDG CK+G
Sbjct: 258 NALVNGFCRVRDMKAANDIVEEMRKDG---LKPDKVTYTTLIDGCCKEGELDTAMEMKQE 314
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D+G+ D VT + LSK G+ +A +L M++ + P+ TY ++D F
Sbjct: 315 MSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGD 374
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + +YN+++NG+C +++A L ML+ G+ + TYN
Sbjct: 375 VKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNI 434
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L +DG K+G V + ++ SA G
Sbjct: 435 L-----------------LDGHCKHGKVRDTEELKSAKG 456
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 41/243 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + G L + ++V +N+L+ G C + A + +++ P+ +T+
Sbjct: 233 GDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTY 292
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL A+ + +EM +E GV D VT T +I GL K G
Sbjct: 293 TTLIDGCCKEGELDTAMEMKQEMSDE-GVAL--DDVTYTALISGLSKAGRSVDAERILCE 349
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM+ G++PD T ++ D K+G ++ L+ M + NP TYN +M+GF
Sbjct: 350 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 409
Query: 158 ---------AWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A + G C +D+ +YNIL++G+CK V D L ++G+ +D Y
Sbjct: 410 MKNADMLLNAMLNIGVCPNDI-TYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYT 465
Query: 208 TLF 210
+L
Sbjct: 466 SLI 468
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P+ VT+ +LI G C EG + A + ++++ + +T+ L + L+ V+
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL-ISGLSKAGRSVDA 343
Query: 79 FGVIC-------KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++C +PD T T +ID CK+G M ++G P +VT NV+ +
Sbjct: 344 ERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNG 403
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----------SKGCRHDVYS 170
G+M+ A+ LL M+ V PN TYN L+DG +KG D
Sbjct: 404 FCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAKGMVSDFGV 463
Query: 171 YNILINGYCKDRNVE 185
Y LIN + K ++ +
Sbjct: 464 YTSLINEFVKKKSAK 478
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN---------------VPPDSHV 222
Y + + D SL L GIR ++ L + + VPP++
Sbjct: 57 YADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLPSVPEAYAFYLHLLDAGVPPEARQ 116
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ + + ++G + A VF + T+ T N L+ G+CK L A + LM
Sbjct: 117 FNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA-NALRGLM 175
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TY I G CK G+ Q A + +M E GL PN
Sbjct: 176 AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPN 218
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 173/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++V +N++I G EG + +A LFK++ P+++T++++ A
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ GV+ PD T N+I G G M Q + PDVV LN +
Sbjct: 278 FLRQMVNK-GVL--PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMG 334
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD------------- 167
+L K GK++EA + + M + NP+ +Y +++G+A +KGC D
Sbjct: 335 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA--TKGCLVDMTDLFDLMLGDGI 392
Query: 168 ---VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
+ ++N+LI Y ++ A+ + EM G++ TY T+ A+
Sbjct: 393 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I +I+ LC
Sbjct: 453 KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLC 512
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL PD V YN+++ G+C G+ +KA + M G+EPN
Sbjct: 513 KLGRVMDAQNIFDLTV-NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 166/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P + TFN LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 393 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAME 452
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV+ PD +I G C G + M+ GMR D+V + +
Sbjct: 453 KFNQMIDQ-GVV--PDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIIN 509
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P+ YN LMDG+ A S G
Sbjct: 510 NLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEP 569
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH- 221
+V Y L+NGYCK +++ +SL REML +GI+ YN LF A VP
Sbjct: 570 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 629
Query: 222 -------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y+ + GL+KN EA+ +F + + I T N +I G+ +
Sbjct: 630 HEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQT 689
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ GL P VTY+IMI KEG ++A + M+ G EP+
Sbjct: 690 RRVEEAKDLFASISRS-GLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 745
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 38/214 (17%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + N++ +L GK +A+ LL +M A C DV
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDLLRMM-------------------AEGGTVCSPDVV 222
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN +I+G+ K+ +V A L +EM+ GI D TY+++ A+
Sbjct: 223 AYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQM 282
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V PD+ Y I G G EA++VF + + + N L+ LCK G++
Sbjct: 283 VNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKI 342
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
K A D+F M G PDV +Y IM++G+ +G
Sbjct: 343 KEARDVFDT-MAMKGQNPDVFSYTIMLNGYATKG 375
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 61/329 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ I+ + ++V F S+I LC GR+++A +F P+ + +N L
Sbjct: 488 LISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC 547
Query: 66 LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
LV AL +F+ MV+ G+ +P+VV +++G CK G M+ +G++P
Sbjct: 548 LVGKMEKALRVFDAMVSA-GI--EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ N++ D L + G+ A M + + N CT
Sbjct: 605 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT--------------------- 643
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y+I++ G K+R ++A+ L +E+ + ++ D T NT+ I G+
Sbjct: 644 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM-----------------IAGM 686
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++ V EA +F++I V T + +I L K G ++ A D+F MQN G PD
Sbjct: 687 FQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSS-MQNAGCEPD 745
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
N ++ K+ + +A L ++E
Sbjct: 746 SRLLNHVVRELLKKNEIVRAGAYLSKIDE 774
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA--------------TTYNTLFMAIN 214
Y+Y IL++ + E A++ ++L G+R DA T L + ++
Sbjct: 114 YTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLH 173
Query: 215 NVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTIETCNCLIDGLCK 267
P PD Y + L G +A + A G C + N +IDG K
Sbjct: 174 RTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFK 233
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A D+F ++Q G+ PD+VTY+ ++H CK KA L M G+ P+
Sbjct: 234 EGDVNKACDLFKEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + +N +I GL GR + A F ++ N T
Sbjct: 584 IGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT 643
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGF--MM 104
++ + L F+E + F + K D++T +I G+ KD F +
Sbjct: 644 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASIS 703
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ P VT ++M NL K+G +EEA + M P++ N ++ ++
Sbjct: 704 RSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIV 763
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 764 RAGAYLSKI 772
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 52/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM---- 75
++V++N+++KGLC R + L ++ C PN++TFNTL L LFE +
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274
Query: 76 --VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++E G C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 275 AQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+ +EA LL M Q+D + T+N L+D F S GC DV
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y +ING+CK+ +++AV L + M S G + P++ YT + G
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCK-----------------PNTVSYTIVLKG 435
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G ++A ++ S + C T N LI+ LCK G ++ A ++ ++ N G +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN-GCSP 494
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 50/330 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL------FEEMVNEF- 79
N ++ +C +G + EA L +KL F C+ +++++N + L L + EE+++E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV-LKGLCMAKRWGDVEELMDEMV 243
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
V C P++VT +I LC++G M + G PD+ + D + K+G +E
Sbjct: 244 RVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE 303
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFA----W----------WSKGCRHDVYSYNILI 175
AN +L M + PN YNT++ G W + K C D ++NIL+
Sbjct: 304 VANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ +C++ V+ + L +MLS G D TY TT I+G K G
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITY-----------------TTVINGFCKEGL 406
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ EA+ + ++ + C + ++ GLC GR A ++ ++Q G P+ VT+N
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFN 465
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+ CK+G ++A LL M G P+
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPD 495
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
PN TF +++GLCT GRI +A + +++ C P ++ + A F V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
+ C D C +++ +C+ G + + G D+V+ N + L
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWWSK-GCRHDVYS 170
+ + L++ M++ D PN T+NTL+ + A S+ GC D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +I+G CK+ ++E A + M S G++ + YNT+ + GL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV-----------------LKGL 331
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
EA ++ S + C L T N L+D C+ G + ++ ++ + G PD
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH-GCMPD 390
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+TY +I+GFCKEG +A LL M G +PN
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 55/271 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K ++ C PN +++ T+ L L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY-TIVLKGL 436
Query: 70 ----------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L +M+ + C P+ VT +I+ LCK G M+ G
Sbjct: 437 CSAGRWVDAEELMSQMIQQG---CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD+++ + + D L K GK EEA LL VM+ + ++PNT Y+++ + +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
R D YN +I+ CK + A+ M+S G
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCM--------------- 598
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I GL G EA ++ S +
Sbjct: 599 --PNESTYTMLIKGLASEGLAKEAQELLSEL 627
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 56/321 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGVICK 84
+LI+ LC+ GR EAAR V+ +N + A L V
Sbjct: 52 ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108
Query: 85 PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P+ T ++ GLC G + D +G P +V+ + + G + +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
LE M +KGC D + N+++N C+ V++AV L R++
Sbjct: 169 LEAM---------------------HAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G AD +YN + M + P+ + T I L +NG
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+V + + H C I +IDG+CK G L++A +I + M + GL P+VV YN
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR-MPSYGLKPNVVCYNT 326
Query: 297 MIHGFCKEGQHQKANGLLLDM 317
++ G C + ++A LL +M
Sbjct: 327 VLKGLCSAERWKEAEELLSEM 347
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 52/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM---- 75
++V++N+++KGLC R + L ++ C PN++TFNTL L LFE +
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVL 274
Query: 76 --VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++E G C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 275 AQMSEHG--CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLC 332
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+ +EA LL M Q+D + T+N L+D F S GC DV
Sbjct: 333 SAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVI 392
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y +ING+CK+ +++AV L + M S G + P++ YT + G
Sbjct: 393 TYTTVINGFCKEGLIDEAVMLLKSMSSCGCK-----------------PNTVSYTIVLKG 435
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G ++A ++ S + C T N LI+ LCK G ++ A ++ ++ N G +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN-GCSP 494
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 50/330 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL------FEEMVNEF- 79
N ++ +C +G + EA L +KL F C+ +++++N + L L + EE+++E
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV-LKGLCMAKRWGDVEELMDEMV 243
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
V C P++VT +I LC++G M + G PD+ + D + K+G +E
Sbjct: 244 RVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLE 303
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFA----W----------WSKGCRHDVYSYNILI 175
AN +L M + PN YNT++ G W + K C D ++NIL+
Sbjct: 304 VANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILV 363
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ +C++ V+ + L +MLS G D TY TT I+G K G
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITY-----------------TTVINGFCKEGL 406
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ EA+ + ++ + C + ++ GLC GR A ++ ++Q G P+ VT+N
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ-GCPPNPVTFN 465
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+ CK+G ++A LL M G P+
Sbjct: 466 TLINFLCKKGLVEQAIELLKQMLVNGCSPD 495
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
PN TF +++GLCT GRI +A + +++ C P ++ + A F V
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
+ C D C +++ +C+ G + + G D+V+ N + L
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWWSK-GCRHDVYS 170
+ + L++ M++ D PN T+NTL+ + A S+ GC D+
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +I+G CK+ ++E A + M S G++ + YNT+ + GL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV-----------------LKGL 331
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
EA ++ S + C L T N L+D C+ G + ++ ++ + G PD
Sbjct: 332 CSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH-GCMPD 390
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+TY +I+GFCKEG +A LL M G +PN
Sbjct: 391 VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 55/271 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K ++ C PN +++ T+ L L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY-TIVLKGL 436
Query: 70 ----------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L +M+ + C P+ VT +I+ LCK G M+ G
Sbjct: 437 CSAGRWVDAEELMSQMIQQG---CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
PD+++ + + D L K GK EEA LL VM+ + ++PNT Y+++ + +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
R D YN +I+ CK + A+ M+S G
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCM--------------- 598
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I GL G EA ++ S +
Sbjct: 599 --PNESTYTMLIKGLASEGLAKEAQELLSEL 627
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 56/321 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGVICK 84
+LI+ LC+ GR EAAR V+ +N + A L V
Sbjct: 52 ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108
Query: 85 PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P+ T ++ GLC G + D +G P +V+ + + G + +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
LE M +KGC D + N+++N C+ V++AV L R++
Sbjct: 169 LEAM---------------------HAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKL 207
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G AD +YN + M + P+ + T I L +NG
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+V + + H C I +IDG+CK G L++A +I + M + GL P+VV YN
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNR-MPSYGLKPNVVCYNT 326
Query: 297 MIHGFCKEGQHQKANGLLLDM 317
++ G C + ++A LL +M
Sbjct: 327 VLKGLCSAERWKEAEELLSEM 347
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 150/321 (46%), Gaps = 53/321 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
PN+ T+N L++ LC G EA + + + CDPN +T+NTL
Sbjct: 154 APNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTL--------------V 199
Query: 80 GVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C+ +V ++D M + G++P++VT N + + + K G+ME+A + + M
Sbjct: 200 AAFCRAGEVDRAERLVD------MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEM 253
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ + P+ +YNTL+ G+ KG DV ++ LI+ CK N+
Sbjct: 254 VKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNL 313
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E AV L REM G++ + T +T IDG K GF+ +A+
Sbjct: 314 ERAVGLVREMRERGLQMNEIT-----------------FTALIDGFCKKGFLDDALLAVR 356
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + ++ N LI+G C +GR+ A ++ M+ G+ PDVVTY+ ++ +CK
Sbjct: 357 EMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE-MEAKGVKPDVVTYSTILSAYCKN 415
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G A L M E G+ P+
Sbjct: 416 GDTHSAFQLNQQMLENGVLPD 436
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 163/390 (41%), Gaps = 70/390 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++ P+ V++N+L+ G C G EA +F ++ P+V+TF
Sbjct: 241 GRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTF 300
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+L V A+ L EM E G+ + + +T T +IDG CK GF+ D
Sbjct: 301 TSLIHVMCKAGNLERAVGLVREM-RERGL--QMNEITFTALIDGFCKKGFLDDALLAVRE 357
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++P VV N + + G+M+EA L+ M + V P+ TY+T++ +
Sbjct: 358 MRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGD 417
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +Y+ LI C+++ + DA L + M+S G++ D TY +
Sbjct: 418 THSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTS 477
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PD Y+ I+GL K+ EA ++ + + +
Sbjct: 478 LIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEE 537
Query: 251 CV---------------LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V +++ L+ G C G + A ++ ++ D Y+
Sbjct: 538 PVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDR-NWNLDGSVYS 596
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++IHG C+EG KA M + G PN
Sbjct: 597 VLIHGHCREGNVMKALSFHKQMLQCGFAPN 626
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 137/328 (41%), Gaps = 86/328 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L ++L + P+ +T++SLI+ LC E R+ +A LFK
Sbjct: 416 GDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKN------------- 462
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
+++L L +PD VT T++IDG CK+G M+ G+ PD
Sbjct: 463 ----MISLGL------------QPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPD 506
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------DG 156
VVT +V+ + LSK + +EA LL + + P Y+ LM G
Sbjct: 507 VVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKG 566
Query: 157 F--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
F + + D Y++LI+G+C++ NV A+S ++ML G
Sbjct: 567 FCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGF--- 623
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P+S + I GL++ G V+EA +V + N + E LI
Sbjct: 624 --------------APNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALI 669
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
D K G + D+ H + ++ GL P
Sbjct: 670 DLNLKEGNVDAVLDVLHGMARD-GLLPS 696
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R +L R+ F+P+ VT+N +I LC+ G++ A ++ +L C P VIT
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVIT 230
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ L AL L +EM++ G+ KPD+ T II G+CK+G M+D
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSR-GL--KPDMFTYNTIIRGMCKEG-MVDRAFEMV 286
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----D 155
+G PDV++ N++ L GK EE L+ M +PN TY+ L+ D
Sbjct: 287 RNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRD 346
Query: 156 GFAWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + KG D YSY+ LI +C++ ++ A+ M+S+G D Y
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NT+ L KNG +A+++F +G C + N + L
Sbjct: 407 NTVLAT-----------------LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G A + +M N G+ PD +TYN MI C+EG +A LL+DM P+
Sbjct: 450 SSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPS 507
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 159/350 (45%), Gaps = 56/350 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L+ +L P+M T+N++I+G+C EG + A + + L + +P+VI++
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISY 301
Query: 62 NTLALVALNL--FEE----MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
N L LN +EE M F C P+VVT + +I LC+DG M +
Sbjct: 302 NILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G+ PD + + + ++G+++ A LE MI S GC
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI---------------------SDGCL 400
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D+ +YN ++ CK+ + A+ + ++ G ++++YNT+F A+
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N + PD Y + I L + G V EA ++ + + + ++ T N ++ G CK
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCK 520
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ A ++ ++ N G P+ TY ++I G G +A L D+
Sbjct: 521 AHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 45/299 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGL---------CKDGFMMDQGMRPDVVTLNVM 118
+L+L E MV + PDV+ CT +I G + ++++ +PDV N +
Sbjct: 108 SLHLLETMVRKG---YNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNAL 164
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ K ++++A +L+ M +D +P+T TYN ++ S C
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FM 211
+ V +Y ILI + V++A+ L EMLS G++ D TYNT+ F
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 212 AINNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ N+ PD Y + L G E K+ + + + KC + T + LI LC
Sbjct: 285 MVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 344
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+++ A ++ LM+ GLTPD +Y+ +I FC+EG+ A L M G P+
Sbjct: 345 RDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYS 170
+ G E+ LLE M+++ NP+ L+ GF K + DV++
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFA 160
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
YN LING+CK ++DA + M S+ D TYN + ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N P YT I+ G V EA+K+ + + + T N +I G+CK G +
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+++ L + G PDV++YNI++ +G+ ++ L+ M +PN
Sbjct: 281 RAFEMVRNL-ELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 167/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ VT+N+++ LC +GR+ +A L + PN T+N L + +E N
Sbjct: 240 SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVTLNVMTDNLS 123
++ + PDV T +I+GLC +G F + M PDVV+ N + +
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCL 359
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------------GCRH 166
+ K+ EA LLE M ++ V PN T+N ++ W+ K G
Sbjct: 360 EWSKISEAFKLLEEMSEKGVKPNAVTHNIMV---KWYCKEGKMDDASNTITKMEESGFSP 416
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-------- 218
D +YN LINGYCK N+ +A EM + ++ D+ T NT+ +
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476
Query: 219 ----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
D Y T I G +K+G V A+K++ + + + + T NC+I GLC+
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + A + L+++ GL PD TYN ++HG+C+EG +KA M E +P+
Sbjct: 537 GKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPD 592
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++ T+N LI GLC EGRI EA +L ++ P+V+++NTL A L
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
EEM +E GV KP+ VT ++ CK+G M D G PD VT N + +
Sbjct: 371 LEEM-SEKGV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----D 167
K G M EA ++ M ++++ ++ T NT++ + + S + D
Sbjct: 428 YCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID 487
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAINNVP 217
SY LI GY KD NV+ A+ L EM + I TYN + AI+ +
Sbjct: 488 EVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN 547
Query: 218 --------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD Y T + G + G V +A + + + + + TCN L+ GLC G
Sbjct: 548 ELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEG 607
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ A +F+ + + G D VTYN +I CKEG+ A LL +MEE L P+
Sbjct: 608 MLEKALKLFNTWV-SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 145/326 (44%), Gaps = 55/326 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV------ALNL 71
+P+ ++ I G+ A ++FKK+ PN++T NTL +LV +++
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191
Query: 72 FEEMVNE---FGVICKPDVVTCTNIIDGLC-----KDG-----FMMDQGMRPDVVTLNVM 118
E N+ G++ P+V T +I G C KD M PD VT N +
Sbjct: 192 SREAFNDAIKLGIV--PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR---------- 165
D L K G++ +A LL M R + PN TYN L+ G+ W +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309
Query: 166 -HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV++YN+LING C + +E+A L EM + + D +YNTL
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL--------------- 354
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+G + + EA K+ + T N ++ CK G++ A + M+
Sbjct: 355 --INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITK-MEE 411
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKA 310
G +PD VTYN +I+G+CK G +A
Sbjct: 412 SGFSPDCVTYNTLINGYCKAGNMGEA 437
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P L+ + G+ A + + M + + PN T NTL++ +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G +V ++NI+I GYC + +DAV M
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLN-----------------VMG 235
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N PD+ Y T +D L K G + +A + + + + T N L+ G CK+G LK
Sbjct: 236 KYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++ QN L PDV TYN++I+G C EG+ ++A L +ME L P+
Sbjct: 296 EAANVIELMTQN-NLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPD 347
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG A +GR M + VT N++++ LC E ++ EA +L + ++
Sbjct: 434 MGEAFRTMDEMGRKNMKM---DSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVS 490
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL + AL L++EM E +I P VT II GLC+ G
Sbjct: 491 YGTLIVGYFKDGNVDRALKLWDEM-KEKEII--PSTVTYNCIIGGLCQCGKTEQAISKLN 547
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+++ G+ PD T N + ++G +E+A M++ P+ T N L+ G
Sbjct: 548 ELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEG 607
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W SKG D +YN LI CK+ ++DA +L EM + + D TYN
Sbjct: 608 MLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYN 667
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK------VFSAIGNHKCVLTIETCNCL 261
+ A+ + L K + ++ V ++ + + + +
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEW 727
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
I LC G+ K A IF Q G+T D TY ++ G K +
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQK-GITVDKSTYINLMDGLIKRRK 771
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 152/335 (45%), Gaps = 58/335 (17%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
TFN +++ LC G+ + A L +++ PN +T+NT+ AL + EM
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREM 173
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG-MRPDVVTLNVMTDNLSK 124
G+ PD T +I G CK G M D QG + P V N +
Sbjct: 174 RERGGI--APDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCD 231
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFA---------WWSKGCRHDVYS 170
GK++ A E M+QR V TYN L MDG A G DV++
Sbjct: 232 RGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFT 291
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YNILINGYCK+ N + A+ + EM +G+RA A TY +L A +
Sbjct: 292 YNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFS---------------- 335
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G V E ++F + N LI+ C G ++ A++I M+ + PD
Sbjct: 336 -RKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAE-MEKKRIPPD 393
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN +I GFC G+ +A GL+ +M + G++P+
Sbjct: 394 DVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPD 428
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 29/223 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRAS + +L + + +P++ T+N LI G C EG +A +F++++ +T+
Sbjct: 268 GRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTY 327
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
+L A +E F V K +G+RPDVV N +
Sbjct: 328 TSLIYAFSRKGQVQETDRLFKVAVK---------------------KGIRPDVVMYNALI 366
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----SKGCRHDVYSYNIL 174
++ G ME A ++ M ++ + P+ TYNTL+ GF ++G ++ I
Sbjct: 367 NSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQ 426
Query: 175 IN-GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ G CK+ +DA +L +EM+ +GI D +TY +L + V
Sbjct: 427 PDLGLCKNGQGDDAENLMKEMVGKGITPDDSTYISLIEGLTTV 469
>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
Length = 439
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 55/362 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-- 60
+ S LG+++ P++VT +SL+ G C I +A + ++ +V+
Sbjct: 63 QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDT 122
Query: 61 -------FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---- 109
N L + AL + + M + G+ P+VVT +++I GLCK G + D R
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDR-GI--SPNVVTYSSLITGLCKSGRLADAERRLHEM 179
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
P+V+T + + D +K GK+ + + + ++MIQ ++PN TY++L+ G
Sbjct: 180 DSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRV 239
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC +V +Y+ L NG+ K V+D + L +M G+ A+ + NTL
Sbjct: 240 DEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTL 299
Query: 210 ------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M N + P+ Y + GL+ NG V +A+ F + +
Sbjct: 300 IKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRN 359
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK +K A+D+F+ L + + PD Y IMI + G +A+
Sbjct: 360 DLDIITYTIMIHGMCKACMVKEAYDLFYKL-KFKRVEPDFKAYTIMIAELNRAGMRTEAD 418
Query: 312 GL 313
L
Sbjct: 419 AL 420
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 142/351 (40%), Gaps = 87/351 (24%)
Query: 56 PNVITFNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------- 99
P+++ FN + V +NL++ + N G+ PD+ TC +++ C+
Sbjct: 8 PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67
Query: 100 ---DGFMMDQGMRPDVVTL----------NVMTDNLSKDGKMEE---------------- 130
G MM G+ PD+VT N + D + G+ME+
Sbjct: 68 LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127
Query: 131 ---------ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
A +L+ M R ++PN TY++L+ G SK +
Sbjct: 128 LCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 187
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
V +++ LI+ Y K + S+ + M+ I + TY++L
Sbjct: 188 VITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLD 247
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M P+ Y+T +G +K+ V + +K+ + +CN LI G + G
Sbjct: 248 LMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAG 307
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
++ +A +F + N GL P++ +YNI++ G G+ +KA M++T
Sbjct: 308 KIDLALGVFGYMTSN-GLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 357
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 24/162 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHVY 223
D+Y+ NIL+N +C+ A+S +M+ GI D T ++L F N++
Sbjct: 47 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIK------ 100
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
D +Y G +E M I V TI LID LCK + A ++ M+
Sbjct: 101 ----DAVYVAG-QMEKM----GIKRDVVVDTI-----LIDTLCKNRLVVPALEVLKR-MK 145
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++P+VVTY+ +I G CK G+ A L +M+ + PN
Sbjct: 146 DRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 187
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/361 (29%), Positives = 164/361 (45%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R +L R+ F+P+ VT+N +I LC+ G++ A ++ +L C P VIT
Sbjct: 167 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVIT 226
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ L AL L +EM++ G+ KPD+ T II G+CK+G M+D
Sbjct: 227 YTILIEATMLEGGVDEALKLLDEMLSR-GL--KPDMFTYNTIIRGMCKEG-MVDRAFEMI 282
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----D 155
+G PDV++ N++ L GK EE L+ M +PN TY+ L+ D
Sbjct: 283 RNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRD 342
Query: 156 GFAWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + KG D YSY+ LI +C++ ++ A+ M+S+G D Y
Sbjct: 343 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 402
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NT+ L KNG +A+++F +G C + N + L
Sbjct: 403 NTVLAT-----------------LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 445
Query: 267 KIGRLKIAWDIFHMLMQ--NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G A HM+++ + G+ PD +TYN MI C+EG KA LL+DM P
Sbjct: 446 SSGDKIRA---LHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHP 502
Query: 325 N 325
+
Sbjct: 503 S 503
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 160/350 (45%), Gaps = 56/350 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL +L P+M T+N++I+G+C EG + A + + L + C+P+VI++
Sbjct: 238 GGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISY 297
Query: 62 NTLALVALNL--FEE----MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
N L LN +EE M F C P+VVT + +I LC+DG M +
Sbjct: 298 NILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 357
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G+ PD + + + ++G+++ A LE MI S GC
Sbjct: 358 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI---------------------SDGCL 396
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D+ +YN ++ CK+ + A+ + ++ G ++++YNT+F A+
Sbjct: 397 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 456
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N + PD Y + I L + G V +A ++ + + + ++ T N ++ G CK
Sbjct: 457 ILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCK 516
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ A D+ ++ N G P+ TY ++I G G +A L D+
Sbjct: 517 AHRIEDAIDVLDSMVGN-GCRPNETTYTVLIEGIGFAGYRAEAMELANDL 565
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 137/299 (45%), Gaps = 45/299 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGL---------CKDGFMMDQGMRPDVVTLNVM 118
+L+L E MV + PDV+ CT +I G + ++++ +PDV N +
Sbjct: 104 SLHLLETMVRKG---YNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFAYNAL 160
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ K ++++A +L+ M +D +P+T TYN ++ S C
Sbjct: 161 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNC 220
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FM 211
+ V +Y ILI + V++A+ L EMLS G++ D TYNT+ F
Sbjct: 221 QPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 280
Query: 212 AINNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
I N+ PD Y + L G E K+ + + + KC + T + LI LC
Sbjct: 281 MIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 340
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+++ A ++ LM+ GLTPD +Y+ +I FC+EG+ A L M G P+
Sbjct: 341 RDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 398
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYS 170
+ G E+ LLE M+++ NP+ L+ GF K + DV++
Sbjct: 97 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFGQPDVFA 156
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
YN LING+CK ++DA + M S+ D TYN + ++
Sbjct: 157 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLL 216
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N P YT I+ G V EA+K+ + + + T N +I G+CK G +
Sbjct: 217 SDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 276
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+++ L + G PDV++YNI++ +G+ ++ L+ M +PN
Sbjct: 277 RAFEMIRNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 168/371 (45%), Gaps = 49/371 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++L PN+VT+N L+ GLC GR+ E L ++ P+ T+
Sbjct: 243 GDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTY 302
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVV----TCTNIIDGLCKDG----------FMMD 105
+ L L + M++ F K V+ TC+ +++GLCKDG ++
Sbjct: 303 SILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVH 362
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G+ P V N + + + + A C+ E M R + P+ TYN L++G
Sbjct: 363 TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTK 422
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G V ++N LI+ Y +E ++ +M +GI++D ++ ++
Sbjct: 423 AEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVK 482
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
A +V P++ VY + ID ++G +A+ + + N
Sbjct: 483 AFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSA 542
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+I T N L+ GLC+ ++ A ++ + L +N GL PDVV+YN +I C +G KA L
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNKGDTDKALEL 601
Query: 314 LLDMEETGLEP 324
L +M + G+ P
Sbjct: 602 LQEMNKYGIRP 612
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 161/378 (42%), Gaps = 57/378 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
+GR + G ++ + P+ +N +++ G + A + +++ + P+
Sbjct: 135 VGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDA 194
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
++N + AL +F+EMV + GV P+ +T +IDG K G
Sbjct: 195 FSYNVVIAGLWRSGKGSDALKVFDEMV-DMGV--APNRITYNTMIDGHVKGGDLEAGFRL 251
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M+ G +P+VVT NV+ L + G+M+E L++ M + P+ TY+ L DG
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311
Query: 160 --------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG Y+ +IL+NG CKD V A + ++ G+
Sbjct: 312 TGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVI 371
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YNTL M ++ PD Y I+GL K V +A + +
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
++ET N LID G+L+ + + MQ G+ DV+++ ++ FCK G+
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD-MQQKGIKSDVISFGSVVKAFCKNGKI 490
Query: 308 QKANGLLLDMEETGLEPN 325
+A +L DM + PN
Sbjct: 491 PEAVAILDDMIYKDVAPN 508
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 144/331 (43%), Gaps = 51/331 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G F + ++ P+ +T+N+LI GLC + +A L ++ DP+V TFNTL
Sbjct: 387 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL- 445
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
++ +G + + C ++ M +G++ DV++ + K+
Sbjct: 446 ----------IDAYGTAGQ--LEKCFTVLSD------MQQKGIKSDVISFGSVVKAFCKN 487
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA +L+ MI +DV PN YN+++D + + G + +Y
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTY 547
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N+L+ G C+ +++A L + ++G+R D +YNT+ A N
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN---------------- 591
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +A+++ + + T+ TC+ L+ L GR+ + + M + + P
Sbjct: 592 -KGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVH-DMECLYQQMLHKNVEPSS 649
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
Y IM+ + + K L +M E G+
Sbjct: 650 SIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
F +L + ++++F S++K C G+I EA + + PN +N++
Sbjct: 459 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
AL L E+M N GV +VT ++ GLC+ + +QG+
Sbjct: 519 YIESGDTEQALLLVEKMKNS-GV--SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD- 167
RPDVV+ N + G ++A LL+ M + + P T +TL+ A S G HD
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALA--SAGRVHDM 633
Query: 168 --VYS-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+Y Y I+++ Y + N SL +EM +GI D T
Sbjct: 634 ECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 685
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 159/358 (44%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P+ TFN LI+ LC GRI +A +F + C P+V+T++ L A+
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM + C+PD+VT +I+ +C +G + G +PD VT +
Sbjct: 307 ALLDEMRAKG---CEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVL 363
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCR 165
+L + +E LL M + P+ T+NT++ GC
Sbjct: 364 KSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCV 423
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D+ +Y+ +++G C V+DAV L + S G + D Y T+
Sbjct: 424 ADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEEL 483
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M ++ PPD + T + L + G V A++V + + C I T NC+IDGLC
Sbjct: 484 MAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCN 543
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ L Q+ G PD+VT+N ++ G C + + A L+ +M + P+
Sbjct: 544 ESCIDDAMELLSDL-QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPD 600
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 159/355 (44%), Gaps = 55/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV-- 76
P+ VT+ ++K LC R E L ++ C P+ +TFNT+ +L L + +
Sbjct: 354 PDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEV 413
Query: 77 ----NEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNL 122
+E G C D+VT ++I+DGLC G + D G +PD + + L
Sbjct: 414 VDHMSEHG--CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 471
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+ E A L+ M+ D P+ T+NT++ GC D+
Sbjct: 472 CSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDI 531
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN +I+G C + ++DA+ L ++ S G + D T+NTL
Sbjct: 532 VTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMAN 591
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M +N PPD + T I L + G + +A++ + + CV T + ++D L K G+
Sbjct: 592 MMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGK 651
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ + TPD++TYN +I K G+ ++A LL M GL P+
Sbjct: 652 AQAALELLSGMTNG---TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPD 703
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 62/331 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P +V N LIK LC++GR+ +A R+F L V+T+NT MVN +
Sbjct: 185 PPVVPCNILIKRLCSDGRVSDAERVFAALGP---SATVVTYNT-----------MVNGY- 229
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGM--RPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C+ G +D + GM PD T N + L G++ +A + + M
Sbjct: 230 --CRA----------GRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDM 277
Query: 139 IQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNV 184
+ R +P+ TY+ L+D S KGC D+ +YN+LIN C + +V
Sbjct: 278 LHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV 337
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A+++ + S G + DA TY + M NN PD + T
Sbjct: 338 DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTI 397
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ L + G V A++V + H CV I T + ++DGLC +GR+ A ++ L ++ G
Sbjct: 398 VTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL-KSYG 456
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
PD + Y ++ G C Q ++A L+ +M
Sbjct: 457 CKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 157/345 (45%), Gaps = 65/345 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL R+ P+ + + +++KGLC+ + A L ++ C P+ +T
Sbjct: 439 VGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVT 498
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
FNT+ A+ + E+M +E G C PD+VT IIDGLC + + D
Sbjct: 499 FNTVVASLCQKGLVDRAIRVVEQM-SENG--CSPDIVTYNCIIDGLCNESCIDDAMELLS 555
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
G +PD+VT N + L + E+A L+ M++ + P+ T+NT++
Sbjct: 556 DLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVI------- 608
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCRE-MLSEGIRADATTYNTLFMAINNVPPDS 220
SLC++ +L++ I MA N P+S
Sbjct: 609 --------------------------TSLCQKGLLTQAIE------TLKIMAENGCVPNS 636
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y+ +D L K G A+++ S + N L T N +I L K G+++ A D+ +
Sbjct: 637 STYSIVVDALLKAGKAQAALELLSGMTNGTPDLI--TYNTVISNLTKAGKMEEALDLLRV 694
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ N GL PD TY + +G C+E +A +L +++TGL P+
Sbjct: 695 MVSN-GLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPD 738
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 29/228 (12%)
Query: 15 LMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
L SC P++VTFN+L+KGLC R +A +L + C P+ +TFNT+ +L L
Sbjct: 557 LQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGL 616
Query: 72 FEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG-----FMMDQGMR---PDVVTLNVMT 119
+ + ++ C P+ T + ++D L K G + GM PD++T N +
Sbjct: 617 LTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVI 676
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCR 165
NL+K GKMEEA LL VM+ + P+T TY +L G G
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLS 736
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
D YN ++ G+C+DR + A+ M+S G D +TY L A+
Sbjct: 737 PDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEAL 784
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 154/345 (44%), Gaps = 53/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
++L + P FN L++ G ++ A ++F ++ P V+TFNTL
Sbjct: 176 QLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQPTVVTFNTL-------- 226
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+C+ + +DGL K+ M D G++PDV T + + G+ME A
Sbjct: 227 ------ISGMCR---ARDLDAVDGLYKE--MSDVGVKPDVYTYGALIKGFCRTGRMENAV 275
Query: 133 CLLEVMIQRDVNPNTCTYNTLMD----------GFAWWS----KGCRHDVYSYNILINGY 178
+ M VNPN + TL+D G + +G D+ +YN L+NG
Sbjct: 276 KMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGL 335
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ RN++ A S+ EM + G++ D TY TL MA V D
Sbjct: 336 CRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDE 395
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT I GL K G ++A +V + T +ID C+ G +K + +
Sbjct: 396 VTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKE 455
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQN G P VVTYN++++G CK GQ + A+ LL M G+ P+
Sbjct: 456 -MQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPD 499
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 143/317 (45%), Gaps = 57/317 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+ +LIKG C GR+ A ++F ++ +PN + F TL ++L
Sbjct: 253 PDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDL 312
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+++M GV+ PD+V +++GLC+ M + G++PD VT + D
Sbjct: 313 YQDM-RVRGVM--PDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDG 369
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
KDGK++ A + + M +++V+ + TY L+ G + + D
Sbjct: 370 CCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPD 429
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y ++I+ +C+ +V+ L +EM ++G + TYN + +
Sbjct: 430 NTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVI-----------------M 472
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K G + A + A+ N T N L+DG CK G++ + + L + G+
Sbjct: 473 NGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEE----LESSKGM 528
Query: 288 TPDVVTYNIMIHGFCKE 304
PD Y +I K+
Sbjct: 529 VPDFAVYTSLISELAKK 545
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 119/280 (42%), Gaps = 51/280 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + + PN V F +LI C EG + L++ + V P+++ +
Sbjct: 269 GRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAY 328
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A ++ EEM N KPD VT T +IDG CKDG
Sbjct: 329 NALVNGLCRARNLKAAESIVEEMKNAG---LKPDKVTYTTLIDGCCKDGKLDMAMDIKQK 385
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M ++ + D VT + LSK G+ +A +L M++ + P+ TY ++D F
Sbjct: 386 MAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGD 445
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + V +YN+++NG CK +++A L ML+ G+ D TYN
Sbjct: 446 VKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNI 505
Query: 209 L---------------FMAINNVPPDSHVYTTYIDGLYKN 233
L + + PD VYT+ I L K
Sbjct: 506 LLDGQCKHGKVANSEELESSKGMVPDFAVYTSLISELAKK 545
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 167/366 (45%), Gaps = 54/366 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L + M ++ G C PDVV+ T +I+G K+G
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGG-DCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ P+VVT + + L K M++A +L M++ V PN TYN+++ G+
Sbjct: 224 EMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +YN L++ CK+ +A + M G++ + TTY
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + P+ +V++ I K G V +AM VFS +
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 403
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + L+P + YN +IH C + K
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI-DERLSPGNIVYNSLIHSLCIFDKWDK 462
Query: 310 ANGLLL 315
A L
Sbjct: 463 AKDYFL 468
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)
Query: 90 CTNIID-GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNT 147
C +D G G ++ +G R D + + L D + +A + +L M Q PN
Sbjct: 103 CAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNV 162
Query: 148 CTYNTLMDGFAWWSKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
+YN L+ G ++ C DV SY +ING+ K+ +++ A
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
EML GI + TY+++ A+ N V P+ Y + + G +
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + + T N L+D LCK GR A +F M GL P++ T
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS-MTKRGLKPEITT 341
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++ G+ +G + +GLL M G+ PN
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 142 DVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+V PN CTY L+ GFA KG R D ++ L+ G C D+ DA
Sbjct: 86 EVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDA 145
Query: 188 VSLC-REMLSEGIRADATTYNTLFMAI--------------------NNVPPDSHVYTTY 226
+ + R M G + +YN L + + PPD YTT
Sbjct: 146 MDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTV 205
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + +A + + + + + T + +I LCK + A ++ +++N G
Sbjct: 206 INGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKN-G 264
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 VMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303
>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
Length = 514
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 55/362 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-- 60
+ S LG+++ P++VT +SL+ G C I +A + ++ +V+
Sbjct: 138 QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDT 197
Query: 61 -------FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---- 109
N L + AL + + M + G+ P+VVT +++I GLCK G + D R
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDR-GI--SPNVVTYSSLITGLCKSGRLADAERRLHEM 254
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
P+V+T + + D +K GK+ + + + ++MIQ ++PN TY++L+ G
Sbjct: 255 DSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRV 314
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC +V +Y+ L NG+ K V+D + L +M G+ A+ + NTL
Sbjct: 315 DEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTL 374
Query: 210 ------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M N + P+ Y + GL+ NG V +A+ F + +
Sbjct: 375 IKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRN 434
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK +K A+D+F+ L + + PD Y IMI + G +A+
Sbjct: 435 DLDIITYTIMIHGMCKACMVKEAYDLFYKL-KFKRVEPDFKAYTIMIAELNRAGMRTEAD 493
Query: 312 GL 313
L
Sbjct: 494 AL 495
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 159/394 (40%), Gaps = 87/394 (22%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
R + F+ + + +++ + +A LF + P+++ FN +
Sbjct: 40 RFWVRAFSGTTIDYREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQ 99
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVV 113
V +NL++ + N G+ PD+ TC +++ C+ G MM G+ PD+V
Sbjct: 100 MYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIV 159
Query: 114 TL----------NVMTDNLSKDGKMEE-------------------------ANCLLEVM 138
T N + D + G+ME+ A +L+ M
Sbjct: 160 TASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRM 219
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
R ++PN TY++L+ G SK +V +++ LI+ Y K +
Sbjct: 220 KDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKL 279
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI---NNV---------------PPDSHVYTTY 226
S+ + M+ I + TY++L + N V P+ Y+T
Sbjct: 280 SKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTL 339
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+G +K+ V + +K+ + +CN LI G + G++ +A +F + N G
Sbjct: 340 ANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSN-G 398
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L P++ +YNI++ G G+ +KA M++T
Sbjct: 399 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 432
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 24/162 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHVY 223
D+Y+ NIL+N +C+ A+S +M+ GI D T ++L F N++
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIK------ 175
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
D +Y G +E M + K + ++T LID LCK + A ++ M+
Sbjct: 176 ----DAVYVAG-QMEKMGI-------KRDVVVDTI--LIDTLCKNRLVVPALEVLKR-MK 220
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++P+VVTY+ +I G CK G+ A L +M+ + PN
Sbjct: 221 DRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 262
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/367 (30%), Positives = 169/367 (46%), Gaps = 57/367 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL- 69
LG++ + F N ++N LI L G EA +++K++ P++ T++ L +VAL
Sbjct: 180 LGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSAL-MVALG 238
Query: 70 ---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+L EEM G+ +P++ T T I L + G M D+G P
Sbjct: 239 RRRDTGTIMDLLEEM-ETLGL--RPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGP 295
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW 160
DVVT V+ D L GK+++A L M P+ TY TLM F +W
Sbjct: 296 DVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFW 355
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN- 215
S+ G DV +Y IL+ CK V+ A + M GI + TYNTL + N
Sbjct: 356 SEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNL 415
Query: 216 -----------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
V P ++ Y +ID K G +A+ F + + +I C
Sbjct: 416 RRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAAC 475
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N + L ++GR++ A DIF+ + N GL+PD VTYN+M+ + K GQ KA LL +M
Sbjct: 476 NASLYSLAEMGRIREAKDIFNDI-HNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEML 534
Query: 319 ETGLEPN 325
G EP+
Sbjct: 535 SEGCEPD 541
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 158/337 (46%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++VT+ LI LC G++ +A L+ K+ P+++T+ TL +++FG
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL-----------MSKFG 343
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
D+ T + DG+ PDVVT ++ + L K GK+++A +L+VM
Sbjct: 344 NYG--DLETVKRFWSEMEADGYA------PDVVTYTILVEALCKSGKVDQAFDMLDVMRV 395
Query: 141 RDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVED 186
R + PN TYNTL+ G S G YSY + I+ Y K + E
Sbjct: 396 RGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEK 455
Query: 187 AVSLCREMLSEGIRA-----DATTYN-----------TLFMAINN--VPPDSHVYTTYID 228
A+ +M GI +A+ Y+ +F I+N + PDS Y +
Sbjct: 456 ALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMK 515
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K G + +A K+ + + + C I N LID L K GR+ AW +F L ++ L
Sbjct: 516 CYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRL-KDLKLA 574
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTYNI+I G KEG+ KA L M+E+G PN
Sbjct: 575 PTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPN 611
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 147/349 (42%), Gaps = 56/349 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---------ALVALNLFEEMVNE 78
LI+ LC + + L+A +LF K P ++N L AL LF EM N
Sbjct: 758 LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN- 816
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
C P++ T ++D K M+ +G +P+++T N++ L K +
Sbjct: 817 --AGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSI 874
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHDVYSYNIL 174
+A L +I D +P CTY L+ G + C+ + YNIL
Sbjct: 875 NKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNIL 934
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
ING+ K NV A L + M+ EGIR D +Y L + + +
Sbjct: 935 INGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGL 994
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD+ Y I+GL K+ + EA+ +FS + N + T N LI G + A
Sbjct: 995 DPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGK 1054
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L Q GL P+V TYN +I G K G +A + M G PN
Sbjct: 1055 MFEEL-QFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 153/339 (45%), Gaps = 19/339 (5%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + GR+ P +VT+N LI GL EG++L+A LF + C PN +TF
Sbjct: 556 GRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTF 615
Query: 62 NTLALV-----ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG---------FMMDQ 106
N L A++L +M ++ C PDV+T II GL K+G M +
Sbjct: 616 NALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKK 675
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+ PD VTL + + KDG++E+A ++E + Q + + + LM+ ++
Sbjct: 676 FLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEE 735
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
++ ++ N C+D N+ + L R + + DA F P Y
Sbjct: 736 AISFAEGLVCNSICQDDNL--ILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC 793
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+DGL A+K+F + N C I T N L+D K R+ +++++ ++
Sbjct: 794 LMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCR- 852
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G P+++T+NI+I K KA L ++ P
Sbjct: 853 GCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSP 891
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 171/445 (38%), Gaps = 126/445 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L G + S PN VTFN+L+ LC + A ++F ++ + C P+V+T+
Sbjct: 591 GKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTY 650
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
NT+ A A + +M PD VT ++ G+ KDG
Sbjct: 651 NTIIYGLIKEGRAGYAFWFYHQMKK----FLSPDHVTLYTLLPGVVKDGRVEDAIKIVME 706
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI-----QRD-------------- 142
F+ G++ + + + + ++EEA E ++ Q D
Sbjct: 707 FVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQK 766
Query: 143 -----------------VNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
+P +YN LMDG + GC ++++Y
Sbjct: 767 KALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTY 826
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N+L++ + K + +++ L EML G + + T+N + A+
Sbjct: 827 NLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIIS 886
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P Y I GL K G EAMK+F + +++C N LI+G K G + I
Sbjct: 887 GDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNI 946
Query: 274 AWDIFHMLMQN----------------------------------PGLTPDVVTYNIMIH 299
A D+F +++ GL PD V+YN+MI+
Sbjct: 947 ACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMIN 1006
Query: 300 GFCKEGQHQKANGLLLDMEETGLEP 324
G K + ++A L +M+ G+ P
Sbjct: 1007 GLGKSRRLEEALSLFSEMKNRGISP 1031
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F +L + + PN+ T+N+LI GL R+ EA LF + P ++
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
AL+ FE+M + G++ P + C + L + G + +
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKM-KKRGIM--PSIAACNASLYSLAEMGRIREAKDIFND 497
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G+ PD VT N+M SK G++++A LL M+ P+ N+L+D
Sbjct: 498 IHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGR 557
Query: 158 ---AWWSKGCRHD------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
AW G D V +YNILI G K+ + A+ L M G
Sbjct: 558 VDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESG---------- 607
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PP++ + +D L KN V A+K+F + C + T N +I GL K
Sbjct: 608 -------CPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKE 660
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD-MEETGLE 323
GR A+ +H + + L+PD VT ++ G K+G+ + A ++++ + ++GL+
Sbjct: 661 GRAGYAFWFYHQMKKF--LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQ 714
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 36/233 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L I+ F+P T+ LI GL GR EA ++F+++ + C PN +N L
Sbjct: 880 LYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFG 939
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
+A +LF+ M+ E G+ +PD+ + T +++ L G + D G+ P
Sbjct: 940 KAGNVNIACDLFKRMIKE-GI--RPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDP 996
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D V+ N+M + L K ++EEA L M R ++P TYN L+ F
Sbjct: 997 DTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMF 1056
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G +V++YN LI G+ K N + A S+ ++M+ G +A T+ L
Sbjct: 1057 EELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 133/308 (43%), Gaps = 56/308 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
PN+ T+N L+ RI E L+ ++ C PN+IT N + ALV AL+L
Sbjct: 821 PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880
Query: 72 FEEMVN-EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+ E+++ +F P T +I GL K G M D +P+ N++ +
Sbjct: 881 YYEIISGDFS----PTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILIN 936
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRH 166
K G + A L + MI+ + P+ +Y L+ D ++ + G
Sbjct: 937 GFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDP 996
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D SYN++ING K R +E+A+SL EM + GI + TYN L + N
Sbjct: 997 DTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNA---------- 1046
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
G V +A K+F + + T N LI G K G A+ +F +M G
Sbjct: 1047 -------GMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMI-VG 1098
Query: 287 LTPDVVTY 294
+P+ T+
Sbjct: 1099 CSPNAGTF 1106
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R +L R+ F+P+ VT+N +I LC+ G++ A ++ +L C P VIT
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVIT 230
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ L AL L +EM++ G+ KPD+ T II G+CK+G M+D
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSR-GL--KPDMFTYNTIIRGMCKEG-MVDRAFEMV 286
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----D 155
+G PDV++ N++ L GK EE L+ M +PN TY+ L+ D
Sbjct: 287 RNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRD 346
Query: 156 GFAWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + KG D YSY+ LI +C++ ++ A+ M+S+G D Y
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NT+ L KNG +A+++F +G C + N + L
Sbjct: 407 NTVLAT-----------------LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G A + +M N G+ PD +TYN MI C+EG +A LL+DM P+
Sbjct: 450 SSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPS 507
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 56/350 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L+ +L P+M T+N++I+G+C EG + A + + L + C+P+VI++
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISY 301
Query: 62 NTLALVALNL--FEE----MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
N L LN +EE M F C P+VVT + +I LC+DG M +
Sbjct: 302 NILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G+ PD + + + ++G+++ A LE MI S GC
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI---------------------SDGCL 400
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D+ +YN ++ CK+ + A+ + ++ G ++++YNT+F A+
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N + PD Y + I L + G V EA ++ + + + ++ T N ++ G CK
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCK 520
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ A ++ ++ N G P+ TY ++I G G +A L D+
Sbjct: 521 AHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 45/299 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGL---------CKDGFMMDQGMRPDVVTLNVM 118
+L+L E MV + PDV+ CT +I G + ++++ +PDV N +
Sbjct: 108 SLHLLETMVRKG---YNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNAL 164
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ K ++++A +L+ M +D +P+T TYN ++ S C
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FM 211
+ V +Y ILI + V++A+ L EMLS G++ D TYNT+ F
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 212 AINNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ N+ PD Y + L G E K+ + + + KC + T + LI LC
Sbjct: 285 MVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 344
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+++ A ++ LM+ GLTPD +Y+ +I FC+EG+ A L M G P+
Sbjct: 345 RDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYS 170
+ G E+ LLE M+++ NP+ L+ GF K + DV++
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFA 160
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
YN LING+CK ++DA + M S+ D TYN + ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N P YT I+ G V EA+K+ + + + T N +I G+CK G +
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+++ L + G PDV++YNI++ +G+ ++ L+ M +PN
Sbjct: 281 RAFEMVRNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 153/344 (44%), Gaps = 52/344 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
+L + P FN L++ + G++ A +F ++ P V+TFNTL
Sbjct: 233 LLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL--------- 283
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+CK + N + GL M G+ PDV T L K G++++A
Sbjct: 284 -----MSGMCKASDLNNANALRGL-----MAKAGIAPDVYTYGAFIQGLCKTGRIQDAME 333
Query: 134 LLEVMIQRDVNPNTCTYNTLMDG------------FAW--WSKGCRHDVYSYNILINGYC 179
+ E M +R +NPNT TL+D W ++G + D+ +YN L+NG+C
Sbjct: 334 MFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFC 393
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+ R+++ A + EM +G++ D TY TL M+ V D
Sbjct: 394 RVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDV 453
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT I GL K G ++A ++ + T +ID CK G +K +
Sbjct: 454 TYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKE- 512
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQN G P +VTYN++++GFC GQ + A+ LL M G+ PN
Sbjct: 513 MQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPN 556
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 53/279 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + PN V +LI C EG + L ++ +++ +
Sbjct: 326 GRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 385
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A ++ EEM + KPD VT T +IDG CK+G
Sbjct: 386 NALVNGFCRVRDMKAANDIVEEMRKDG---LKPDKVTYTTLIDGCCKEGELDTAMEMKQE 442
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D+G+ D VT + LSK G+ +A +L M++ + P+ TY ++D F
Sbjct: 443 MSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGD 502
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + +YN+++NG+C +++A L ML+ G+ + TYN
Sbjct: 503 VKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNI 562
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L +DG K+G V + ++ SA G
Sbjct: 563 L-----------------LDGHCKHGKVRDTEELKSAKG 584
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 41/243 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + G L + ++V +N+L+ G C + A + +++ P+ +T+
Sbjct: 361 GDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTY 420
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL A+ + +EM +E GV D VT T +I GL K G
Sbjct: 421 TTLIDGCCKEGELDTAMEMKQEMSDE-GVAL--DDVTYTALISGLSKAGRSVDAERILCE 477
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM+ G++PD T ++ D K+G ++ L+ M + NP TYN +M+GF
Sbjct: 478 MMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQ 537
Query: 158 ---------AWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A + G C +D+ +YNIL++G+CK V D L ++G+ +D Y
Sbjct: 538 MKNADMLLNAMLNIGVCPNDI-TYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYT 593
Query: 208 TLF 210
+L
Sbjct: 594 SLI 596
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 29/195 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P+ VT+ +LI G C EG + A + ++++ + +T+ L + L+ V+
Sbjct: 413 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL-ISGLSKAGRSVDA 471
Query: 79 FGVIC-------KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++C +PD T T +ID CK+G M ++G P +VT NV+ +
Sbjct: 472 ERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNG 531
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----------SKGCRHDVYS 170
G+M+ A+ LL M+ V PN TYN L+DG +KG D
Sbjct: 532 FCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAKGMVSDFGV 591
Query: 171 YNILINGYCKDRNVE 185
Y LIN + K ++ +
Sbjct: 592 YTSLINEFVKKKSAK 606
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN---------------VPPDSHV 222
Y + + D SL L GIR ++ L + + VPP++
Sbjct: 185 YADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMNRLPSVPEAYAFYLHLLDAGVPPEARQ 244
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ + + ++G + A VF + T+ T N L+ G+CK L A + LM
Sbjct: 245 FNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA-NALRGLM 303
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TY I G CK G+ Q A + +M E GL PN
Sbjct: 304 AKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPN 346
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 160/339 (47%), Gaps = 52/339 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L L PN++ +N+LIKGL +G ILEAA+L +++ P V TF
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N L VN +CK + C + DGL K M+ +G PD+ T N++
Sbjct: 430 NIL-----------VNG---LCK---MGCVSDADGLVK--VMISKGYFPDIFTFNILIHG 470
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
S KME A +L+VM+ V+P+ TYN+L++G S KGC +
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++++NIL+ C+ R +++A+ L EM ++ + DA T+ TL I
Sbjct: 531 LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTL-----------------I 573
Query: 228 DGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
DG KNG + A +F + +K + T N +I + + +A +F M +
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE-MVDRC 632
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD TY +M+ GFCK G LL+M E G P+
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 52/351 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G ++G ++ P+++T+N+LI GLC + EA K+ +P+ T+
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324
Query: 62 NTLAL-----VALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
NTL + L E +V + G + PD T ++IDGLC +G
Sbjct: 325 NTLIAGYCKGGMVQLAERIVGDAVFNGFV--PDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ +G++P+V+ N + LS G + EA L M ++ + P T+N L++G
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG D++++NILI+GY +E+A+ + ML G+ D TYN+L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL K + M+ + + C + T N L++ LC+
Sbjct: 503 -----------------LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+L A + M+N + PD VT+ +I GFCK G A L MEE
Sbjct: 546 KLDEALGLLEE-MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 162/334 (48%), Gaps = 53/334 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G+ L G++L S + + TFN L++ LC +G + E +L K+ PN+ T+N
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYN---- 255
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKD 125
LF + + + G + DG + G +++QG +PDV+T N + L K+
Sbjct: 256 ----LFIQGLCQRGEL------------DGAVRMVGCLIEQGPKPDVITYNNLIYGLCKN 299
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSY 171
K +EA L M+ + P++ TYNTL+ G+ G D ++Y
Sbjct: 300 SKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTY 359
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI+G C + A++L E L +GI+ + YNTL I GL
Sbjct: 360 RSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTL-----------------IKGLS 402
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +LEA ++ + + + ++T N L++GLCK+G + A D +M + G PD+
Sbjct: 403 NQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA-DGLVKVMISKGYFPDI 461
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T+NI+IHG+ + + + A +L M + G++P+
Sbjct: 462 FTFNILIHGYSTQLKMENALEILDVMLDNGVDPD 495
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 153/382 (40%), Gaps = 90/382 (23%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------------------- 67
+K +G++ EA +F++++ + C+P V ++N + V
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 68 ----------------------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--- 102
AL L M ++ C+ +VV ++ G ++ F
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG---CEMNVVAYCTVVGGFYEENFKAE 199
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M+ G+ + T N + L K G ++E LL+ +I+R V PN TYN +
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259
Query: 156 GFAWW--------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G +G + DV +YN LI G CK+ ++A +M++EG+
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEP 319
Query: 202 DATTYNTLFMA------------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D+ TYNTL N PD Y + IDGL G A+ +F
Sbjct: 320 DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALF 379
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + N LI GL G + A + + M GL P+V T+NI+++G CK
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE-MSEKGLIPEVQTFNILVNGLCK 438
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G A+GL+ M G P+
Sbjct: 439 MGCVSDADGLVKVMISKGYFPD 460
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 63/327 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S L+ ++ + P++ TFN LI G T+ ++ A + + DP+V T
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+N+L L + FE+++ + M+++G P++ T N++
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKT---------------------MVEKGCAPNLFTFNIL 537
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
++L + K++EA LLE M + VNP+ T+ TL+DGF
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF--------------------- 576
Query: 179 CKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK+ +++ A +L R+M + + + TYN + H +T ++ V
Sbjct: 577 CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII----------HAFTEKLN-------VT 619
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A K+F + + T ++DG CK G + + + +M+N G P + T +
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN-GFIPSLTTLGRV 678
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEP 324
I+ C E + +A G++ M + GL P
Sbjct: 679 INCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VY + + G V EA+ VF + + C T+ + N ++ L G A ++ M
Sbjct: 78 VYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY-MR 136
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G+TPDV ++ I + FCK + A LL +M G E N
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMN 180
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 167/357 (46%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P+ VT+N+++ LC +GR+ +A L + PN T+N L + +E N
Sbjct: 240 SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVTLNVMTDNLS 123
++ + PDV T +I+GLC +G F + M PDVV+ N + +
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCL 359
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------------GCRH 166
+ K+ EA LLE M ++ V PN T+N ++ W+ K G
Sbjct: 360 EWSKISEAFKLLEEMSEKGVKPNAVTHNIMV---KWYCKEGKMDDASNTITKMEESGFSP 416
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP-------- 218
D +YN LINGYCK N+ +A EM + ++ D+ T NT+ +
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476
Query: 219 ----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
D Y T I G +K+G V A+K++ + + + + T NC+I GLC+
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + A + L+++ GL PD TYN ++HG+C+EG +KA M E +P+
Sbjct: 537 GKTEQAISKLNELLES-GLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPD 592
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 161/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L + P++V++N+LI G +I EA +L ++++ PN +T
Sbjct: 327 GRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTH 386
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQ 106
N + A N +M E G PD VT +I+G CK G M MD+
Sbjct: 387 NIMVKWYCKEGKMDDASNTITKM-EESGF--SPDCVTYNTLINGYCKAGNMGEAFRTMDE 443
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ D VTLN + L ++ K+EEA LL +R + +Y TL+ G+
Sbjct: 444 MGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGN 503
Query: 158 -----AWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W + ++ +YN +I G C+ E A+S E+L G+ D TTYNT
Sbjct: 504 VDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ + G + G V +A + + + + + TCN L+ GLC
Sbjct: 564 I-----------------LHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCME 606
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L+ A +F+ + + G D VTYN +I CKEG+ A LL +MEE L P+
Sbjct: 607 GVLEKALKLFNTWV-SKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPD 662
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 145/326 (44%), Gaps = 55/326 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV------ALNL 71
+P+ ++ I G+ A ++FKK+ PN++T NTL +LV +++
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191
Query: 72 FEEMVNE---FGVICKPDVVTCTNIIDGLC-----KDG-----FMMDQGMRPDVVTLNVM 118
E N+ G++ P+V T +I G C KD M PD VT N +
Sbjct: 192 SREAFNDAIKLGIV--PNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR---------- 165
D L K G++ +A LL M R + PN TYN L+ G+ W +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309
Query: 166 -HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV++YN+LING C + +E+A L EM + + D +YNTL
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL--------------- 354
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+G + + EA K+ + T N ++ CK G++ A + M+
Sbjct: 355 --INGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITK-MEE 411
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKA 310
G +PD VTYN +I+G+CK G +A
Sbjct: 412 SGFSPDCVTYNTLINGYCKAGNMGEA 437
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P L+ + G+ A + + M + + PN T NTL++ +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G +V ++NI+I GYC + +DAV M
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLN-----------------VMG 235
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N PD+ Y T +D L K G + +A + + + + T N L+ G CK+G LK
Sbjct: 236 KYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++ QN L PDV TYN++I+G C EG+ ++A L +ME L P+
Sbjct: 296 EAANVIELMTQN-NLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPD 347
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 142/345 (41%), Gaps = 46/345 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG A +GR M + VT N++++ LC E ++ EA +L + ++
Sbjct: 434 MGEAFRTMDEMGRKNMKM---DSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVS 490
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL + AL L++EM E +I P VT II GLC+ G
Sbjct: 491 YGTLIVGYFKDGNVDRALKLWDEM-KEKEII--PSTVTYNCIIGGLCQCGKTEQAISKLN 547
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+++ G+ PD T N + ++G +E+A M++ P+ T N L+ G
Sbjct: 548 ELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEG 607
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W SKG D +YN LI CK+ ++DA +L EM + + D TYN
Sbjct: 608 VLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYN 667
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK------VFSAIGNHKCVLTIETCNCL 261
+ A+ + L K + ++ V ++ + + + +
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEW 727
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
I LC G+ K A IF Q G+T D TY ++ G K +
Sbjct: 728 IKELCTEGKYKDAMRIFGESKQK-GITVDKSTYINLMDGLIKRRK 771
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-ALVALN-LFEEMVNE 78
P++V++N+++KGLC R + L ++ C PNV TFNTL A + N LFE++
Sbjct: 211 PDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEA 270
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ C PD+ IIDG+CKDG M G++P+VV N + L
Sbjct: 271 LSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCS 330
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+ EEA LL M Q D + T+N L+D F GC DV +
Sbjct: 331 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT 390
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING+CK+ V++AV L + M + G + P++ YT + GL
Sbjct: 391 YTTVINGFCKEGLVDEAVMLLKNMSACGCK-----------------PNTISYTIVLKGL 433
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ ++A ++ S + C+ T N LI+ +CK G ++ A ++ ++ N G +PD
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVN-GCSPD 492
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 493 LISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 527
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 49/274 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG + EA L K ++ C PN I++ T+ L L
Sbjct: 375 LLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISY-TIVLKGL 433
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ +I C P+ VT +I+ +CK G M+ G PD+
Sbjct: 434 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDL 493
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK EEA LL VMI + + PNT Y+++ + +
Sbjct: 494 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 553
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK + A+ M+S G P
Sbjct: 554 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCM-----------------P 596
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ YT I GL G V EA + S + + + V
Sbjct: 597 NESTYTILIRGLASEGLVREAQDLLSELCSRRAV 630
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 143/336 (42%), Gaps = 50/336 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC--DPNVITFNTLALVALNLFEEMVNE 78
PN T+ +++ LC G I +A + ++ + C P + A F V
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLS 123
V+ C D C ++ +C+ G +D+G+ PD+V+ N + L
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQG-CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWWSK-GCRHDVY 169
+ ++ L+ M++ PN T+NTL+ + + + GC D+
Sbjct: 225 MAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLR 284
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
Y +I+G CKD + E A + M S G++ + YNT+ + G
Sbjct: 285 MYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTV-----------------LKG 327
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L EA + + + C L T N L+D C+ G + ++ ++++ G P
Sbjct: 328 LCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH-GCIP 386
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV+TY +I+GFCKEG +A LL +M G +PN
Sbjct: 387 DVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 422
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 128/323 (39%), Gaps = 56/323 (17%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGVI 82
++LI+ LC GR +AAR L+ V+ +N + A + V
Sbjct: 47 LSALIRSLCAAGRTADAAR---ALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP 103
Query: 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL----------NVMTDNLSKDGKMEEAN 132
P+ T I+ LC G + D D + L +V+ + + G A
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAV 163
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
L+V+ +KGC D + N++++ C+ V++ V L R
Sbjct: 164 RALQVL---------------------HAKGCTLDSGNCNLVVSAICEQGCVDEGVELLR 202
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
++ S G D +YN + M PP+ + T I L +NG
Sbjct: 203 KLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNG 262
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ + S + H C + +IDG+CK G ++A DI M + GL P+VV Y
Sbjct: 263 LFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR-MPSYGLKPNVVCY 321
Query: 295 NIMIHGFCKEGQHQKANGLLLDM 317
N ++ G C + ++A LL +M
Sbjct: 322 NTVLKGLCSAERWEEAEDLLAEM 344
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 158/358 (44%), Gaps = 54/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
P+ VT+NS+I G GR+ + F+++ CC+P+VIT+N L + L
Sbjct: 161 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 220
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
+ EM G KP+VV+ + ++D CK+G M G+ P+ T +
Sbjct: 221 EFYREMK---GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 277
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D K G + +A L M+Q V N TY L+DG + G
Sbjct: 278 DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVI 337
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
++ SYN LI+G+ K +N++ A+ L E+ GI+ D Y T
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + +S +YTT +D +K+G E + + + +T+ T LIDGLCK
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D F+ + + GL + + MI G CK+ Q + A L M + GL P+
Sbjct: 458 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 515
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 153/341 (44%), Gaps = 60/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P F++L L G + EA + F K+ F P + N L ++ F
Sbjct: 58 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL-----------LHRFA 106
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
+ K D V KD M+ G RP V T N+M D + K+G +E A L E M
Sbjct: 107 KLGKTDDVK------RFFKD--MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKF 158
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVED 186
R + P+T TYN+++DGF + C DV +YN LIN +CK +
Sbjct: 159 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 218
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
+ REM G++ + +Y+TL M + P+ + YT+ ID
Sbjct: 219 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
K G + +A + +GN + +E T LIDGLC R+K A ++F M
Sbjct: 279 ANCKIGNLSDAFR----LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGK-MDT 333
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P++ +YN +IHGF K +A LL +++ G++P+
Sbjct: 334 AGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 374
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 141/323 (43%), Gaps = 49/323 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L N+VT+ +LI GLC R+ EA LF K++ PN+ +
Sbjct: 283 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 342
Query: 61 FNTLA---LVALNLFE--EMVNEF-GVICKPDVVTCTNIIDGLCK------DGFMMDQ-- 106
+N L + A N+ E++NE G KPD++ I GLC +M++
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 402
Query: 107 --GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
G++ + + + D K G E LL+ M + D+ T+ L+DG
Sbjct: 403 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 462
Query: 158 ---AWWSK-----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++++ G + + + +I+G CKD VE A +L +M+ +G+
Sbjct: 463 KAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL---------- 512
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD YT+ +DG +K G VLEA+ + + L + L+ GL
Sbjct: 513 -------VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCN 565
Query: 270 RLKIAWDIFHMLMQNPGLTPDVV 292
+L+ A ++ G+ PD V
Sbjct: 566 QLQKARSFLEEMI-GEGIHPDEV 587
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G +H V SY I+ + R DA S+ +EM+ +AD ++ L+ N P V
Sbjct: 5 GFKHSVESYCIVAHILFCARMYYDANSVLKEMVLS--KADCDVFDVLWSTRNVCVPGFGV 62
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ L G + EA++ FS + + +CN L+ K+G+ F ++
Sbjct: 63 FDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 122
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P V TYNIMI CKEG + A GL +M+ GL P+
Sbjct: 123 -GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 164
>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
Length = 953
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 178/378 (47%), Gaps = 59/378 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R F L ++ S P++VT ++L+ GLC +GR EA LF++++ PN +T
Sbjct: 272 MKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVT 331
Query: 61 F----NTLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ ++LA V +L L EMV+ GV D+V T ++D L K+G
Sbjct: 332 YCTFIDSLAKVQRVNESLGLLGEMVSR-GVAM--DLVMYTTVMDRLGKEGKIEEAKDVLR 388
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ + P+ VT V+ D + G ++ A +L M ++ V+PN T++++++G
Sbjct: 389 HALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLV--K 446
Query: 162 KGC----------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+GC +V +Y LI+G+ K + E A+ + R+ML EG+ A+
Sbjct: 447 RGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFI 506
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
++L M + D Y T +DGL+K G + A+KV +
Sbjct: 507 VDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELM 566
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
N I+ LC++G+ A F M+N GL PD TYN MI C+EG
Sbjct: 567 ERNLSPDAVVYNVFINCLCRLGKFSEAKS-FLKEMRNTGLEPDQATYNTMISAQCREGNT 625
Query: 308 QKANGLLLDMEETGLEPN 325
KA LL +M+ + ++PN
Sbjct: 626 SKALKLLNEMKWSSIKPN 643
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 167/407 (41%), Gaps = 90/407 (22%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
+ ++ R+ + ++V +N+L+ G G A + +++ +P+V+T TL
Sbjct: 206 AAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTL 265
Query: 65 ---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------- 102
A L+E MV GV+ PDVVT + ++DGLC+DG
Sbjct: 266 IGEYCKMKRIEEAFTLYEGMVRS-GVL--PDVVTLSALVDGLCRDGRFSEAYALFREMDK 322
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ +G+ D+V + D L K+GK+EE
Sbjct: 323 IGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEE 382
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILIN 176
A +L + ++ PN TY L+D K +V +++ ++N
Sbjct: 383 AKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILN 442
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G K + A R+M GI + TY TL M V
Sbjct: 443 GLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEA 502
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
++ + + ++GL KNG + EA +F +G +L L+DGL K G + A +
Sbjct: 503 NNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVG 562
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM+ L+PD V YN+ I+ C+ G+ +A L +M TGLEP+
Sbjct: 563 QELMER-NLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPD 608
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 151/351 (43%), Gaps = 55/351 (15%)
Query: 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFE 73
+V +N+LI G C + A + +++ +V+ +NTL A A + E
Sbjct: 189 VVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAE 248
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLS 123
M + GV +P VVT T +I CK + F M+ G+ PDVVTL+ + D L
Sbjct: 249 RMKAD-GV--EPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLC 305
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+DG+ EA L M + V PN TY T +D A S+G D+
Sbjct: 306 RDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLV 365
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
Y +++ K+ +E+A + R LS+ I + TY L M
Sbjct: 366 MYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQM 425
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+V P+ +++ ++GL K G + +A + + + T LIDG K
Sbjct: 426 EEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQ 485
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ A D++ ++ G+ + + +++G K G ++A L DM E GL
Sbjct: 486 EAALDVYRDMLHE-GVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGL 535
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 152/359 (42%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L + + P+ T+N++I C EG +A +L ++ PN+IT
Sbjct: 587 LGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLIT 646
Query: 61 FNTL--ALVALNLFEE---MVNEFGVIC-KPDVVTCTNIIDG----------LCKDGFMM 104
+ TL L+ + E+ ++NE P +T ++ L MM
Sbjct: 647 YTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMM 706
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ D+ N + L G +A +L+ M+ R + P+T T+N
Sbjct: 707 GAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNA------------ 754
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
LI G+CK ++++A + +ML +G+ + T+NTL + +
Sbjct: 755 ---------LILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADT 805
Query: 216 ---------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ P++ Y + G K +EA++++ + + + T N LI
Sbjct: 806 VICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFA 865
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A ++F M+ G+ TY+I+++G+ K + LL DM+E G +P+
Sbjct: 866 KAGMMNQAKELFSE-MKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKPS 923
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 136/364 (37%), Gaps = 90/364 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S LL + S PN++T+ +L+ GL G + +A L ++ P +T+
Sbjct: 623 GNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTY 682
Query: 62 NTL---------ALVALNLFEEMVNE------------FGVIC----------------- 83
+ V L + E M+ V+C
Sbjct: 683 RRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLG 742
Query: 84 ---KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
PD +T +I G CK M+ QG+ P++ T N + L G++ E
Sbjct: 743 RGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGE 802
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A+ ++ M + + PN T Y+IL+ GY K N +A+ L
Sbjct: 803 ADTVICEMKKMGLEPNNLT---------------------YDILVTGYAKKSNKVEALRL 841
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM+S+G A+TYN+L I K G + +A ++FS +
Sbjct: 842 YCEMVSKGFIPKASTYNSL-----------------ISDFAKAGMMNQAKELFSEMKRRG 884
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T T + L++G K+ R I M+ G P T + M F K G +A
Sbjct: 885 VLHTSSTYDILLNGWSKL-RNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEA 943
Query: 311 NGLL 314
LL
Sbjct: 944 RRLL 947
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEG----IRADATTYNTLFMAINN------- 215
D + N +I YC + A+SL R S G + AD +YN ++
Sbjct: 79 DPLTLNSIILSYCSLHALRPALSLLRS--SSGPQPQVAADTVSYNIFLAGLSEQGHGRLA 136
Query: 216 -----------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV--LTIETCNCLI 262
VP D +T + GL + G V EA + + + + L + N LI
Sbjct: 137 PPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAALAEMLVRGRGIDGLGVVGWNALI 196
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG CK+ + A + M GL+ DVV YN ++ GF G A + M+ G+
Sbjct: 197 DGYCKVQDMAAALAVVER-MTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGV 255
Query: 323 EPN 325
EP+
Sbjct: 256 EPS 258
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 159/357 (44%), Gaps = 54/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
P+ VT+NS+I G GR+ + F+++ CC+P+VIT+N L + L
Sbjct: 294 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 353
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
+ EM G KP+VV+ + ++D CK+G M G+ P+ T + D
Sbjct: 354 FYREMK---GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K G + +A L M+Q V N TY L+DG + G
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
++ SYN LI+G+ K +N++ A+ L E+ GI+ D Y T + +
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530
Query: 216 -------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ +S +YTT +D +K+G E + + + +T+ T LIDGLCK
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKN 590
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D F+ + + GL + + MI G CK+ Q + A L M + GL P+
Sbjct: 591 KLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 60/342 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P F++L L G + EA + F K+ F P + N L ++ F
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL-----------LHRF 237
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
+ K D V KD M+ G RP V T N+M D + K+G +E A L E M
Sbjct: 238 AKLGKTDDVK------RFFKD--MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVE 185
R + P+T TYN+++DGF + C DV +YN LIN +CK +
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+ REM G++ + +Y+TL M + P+ + YT+ I
Sbjct: 350 IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 409
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
D K G + +A + +GN + +E T LIDGLC R+K A ++F M
Sbjct: 410 DANCKIGNLSDAFR----LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGK-MD 464
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P++ +YN +IHGF K +A LL +++ G++P+
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 49/323 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L N+VT+ +LI GLC R+ EA LF K++ PN+ +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Query: 61 FNTLA---LVALNLFE--EMVNEF-GVICKPDVVTCTNIIDGLCK----------DGFMM 104
+N L + A N+ E++NE G KPD++ I GLC M
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+ G++ + + + D K G E LL+ M + D+ T+ L+DG
Sbjct: 535 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 594
Query: 159 ----WWSK-----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++++ G + + + +I+G CKD VE A +L +M+ +G+
Sbjct: 595 KAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL---------- 644
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD YT+ +DG +K G VLEA+ + + L + L+ GL
Sbjct: 645 -------VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCN 697
Query: 270 RLKIAWDIFHMLMQNPGLTPDVV 292
+L+ A ++ G+ PD V
Sbjct: 698 QLQKARSFLEEMI-GEGIHPDEV 719
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 157 FAWWS---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
F WS G +H V SY I+ + R DA S+ +EM+ +AD ++ L+
Sbjct: 128 FFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLS--KADCDVFDVLWSTR 185
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
N P V+ L G + EA++ FS + + +CN L+ K+G+
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F ++ G P V TYNIMI CKEG + A GL +M+ GL P+
Sbjct: 246 VKRFFKDMI-GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 296
>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
Length = 506
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 167/358 (46%), Gaps = 54/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F +L +IL + P+++T N+ IKG C +G+I +A KL + ++
Sbjct: 116 LGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVS 175
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL AL L + G + + + V +IDG+ KD
Sbjct: 176 YGTLINGLCKVGETRAALQLLRRVD---GKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYS 232
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ + + PDVVT + + GK+++A L MI ++ P+ T+N L+DGF
Sbjct: 233 EMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEG 292
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ + +V ++N L++G+CKDR +++ ++ M+ +GI+ + TY
Sbjct: 293 RLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYC 352
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+L +DG V +A K+F+ + + + N +I+G CK
Sbjct: 353 SL-----------------MDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I ++ A +F + M + + PDVVTYN +I G CK G+ A L+ +M + G PN
Sbjct: 396 IKKVDKAMKLF-IEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPN 452
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 66/333 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G LL R+ N V +N++I G+ + + +A L+ ++ P+V+T
Sbjct: 186 VGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVT 245
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
++ L +V A++LF +M+ E KPDV T ++DG CK+G
Sbjct: 246 YSALIRGFFIVGKLKDAIDLFNKMILEN---IKPDVYTFNILVDGFCKEGRLKKAKNVLD 302
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
MM Q ++P+V T N + D KD KM+E + +M+++ + PN TY +LMDG+
Sbjct: 303 MMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVK 362
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G +V+SYNI+ING+CK + V+ A+ L EM + I D TYN
Sbjct: 363 QVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYN 422
Query: 208 TL-------------FMAINNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L F +N + PP+ Y + ++ L + + +
Sbjct: 423 SLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNAL------------LTKLKDQ 470
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ T LI GLC+ G+L+ A +F L+
Sbjct: 471 GIQPNMHTDTILIKGLCQSGKLEAARKVFEDLL 503
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 34/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G+ P+ VT N++ + + G + A +L +++ P+ T NT + GF +
Sbjct: 97 EGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQ 156
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G D SY LING CK A+ L R + + ++ +A YNT+
Sbjct: 157 ALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTV-- 214
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
IDG+ K+ V +A ++S + + + T + LI G +G+L
Sbjct: 215 ---------------IDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKL 259
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A D+F+ M+++N + PDV T+NI++ GFCKEG+ +KA +L M ++PN
Sbjct: 260 KDAIDLFNKMILEN--IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPN 312
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 27/187 (14%)
Query: 137 VMIQRDVNPNTCTYNTL----MDGFAWWSKGCRHD-----VYSYNILINGYCKDRNVEDA 187
+++Q++ P + T +DG H + +N ++ K ++
Sbjct: 28 ILLQKNFIPYSSISTTFHSNDVDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTV 87
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+SL ++M EGI + T+N L I+ + G + A V + I
Sbjct: 88 LSLSQQMEFEGINPNFVTFNIL-----------------INCFCQLGLIPFAFSVLAKIL 130
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
I T N I G C G++ A + FH + G D V+Y +I+G CK G+
Sbjct: 131 KMGYEPDIITLNTFIKGFCLKGQIHQALN-FHDKLVALGFHLDQVSYGTLINGLCKVGET 189
Query: 308 QKANGLL 314
+ A LL
Sbjct: 190 RAALQLL 196
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 161/334 (48%), Gaps = 48/334 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N VT+N LI GLC G + EA K + + P+ T+ L N + ++
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 315
Query: 77 NEFG-VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
+E KP+VV N+IDG ++G M+ G++P+ +T + + L K
Sbjct: 316 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 375
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSK-------------GCRHDVYSY 171
G+M+ A+ LL+ M++ P+T TYN +++G F SK G +VY+Y
Sbjct: 376 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I+I+G C+ E A L EM ++G++ P++ VY I G
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLK-----------------PNAFVYAPLISGYC 478
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G V A ++F + + + N LI GL K+GR++ + F MQ GL P+
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ-MQERGLLPNE 537
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+ +IHG+ K G + A L+ M +TGL+PN
Sbjct: 538 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 571
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 159/369 (43%), Gaps = 69/369 (18%)
Query: 16 MSC--FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
MSC PN+V + +LI G EG EA ++ K++ PN IT++ L
Sbjct: 318 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 377
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVT 114
A L ++MV + +PD +T II+G KD F M + G+ P+V T
Sbjct: 378 MDRASLLLKQMVRDSH---RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYT 434
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-------- 166
++M L + G+ E+A+ LLE M + + PN Y L+ G+ CR
Sbjct: 435 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY------CREGNVSLACE 488
Query: 167 ------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
D+Y YN LI G K VE++ +M G+ + TY+ L
Sbjct: 489 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 548
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + P+ +Y ++ +K+ + + F ++ + +L
Sbjct: 549 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 608
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
LI L G ++ A+ + + +N G PDV Y+ +I G CK +KA G+L +
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDE 667
Query: 317 MEETGLEPN 325
M + G++PN
Sbjct: 668 MSKKGVDPN 676
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A F ++ ++ + PN +T+++L++GLC G++ A+ L K++ P+ IT+
Sbjct: 341 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 400
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + A L EM N G+ P+V T + +I GLC+ G
Sbjct: 401 NLIIEGHFRHHSKKDAFRLLSEMENA-GI--SPNVYTYSIMIHGLCQSGEPEKASDLLEE 457
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G++P+ + ++G + A + + M + +V P+ YN+L+ G +
Sbjct: 458 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 517
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + ++Y+ LI+GY K+ ++E A L + ML G++ + Y
Sbjct: 518 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 577
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V D+ +Y I L +G + A +V S I +
Sbjct: 578 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 637
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + + LI GLCK + A+ I M G+ P++V YN +I G CK G A
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYA 696
Query: 311 NGLLLDMEETGLEPN 325
+ + GL PN
Sbjct: 697 RNVFNSILAKGLVPN 711
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 160/404 (39%), Gaps = 89/404 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F LL + + +PN+ T++ +I GLC G +A+ L +++ PN + L
Sbjct: 416 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 475
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
+A +F++M V PD+ ++I GL K G M ++G
Sbjct: 476 GYCREGNVSLACEIFDKMTK---VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 532
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ T + + K+G +E A L++ M+ + PN Y L++ +
Sbjct: 533 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 592
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+ +G D Y ILI+ N+E A + + G D Y++L
Sbjct: 593 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 652
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M+ V P+ Y IDGL K+G + A VF++I V
Sbjct: 653 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 712
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM------------------ 297
T LIDG CK+G + A+ +++ ++ G+TPD Y+++
Sbjct: 713 VTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIE 771
Query: 298 ----------------IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GFCK G+ Q+ LL + GL PN
Sbjct: 772 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPN 815
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 52/216 (24%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
+GC + +YN+LI G C+ VE+A ++M G+ D TY L
Sbjct: 251 RGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNE 310
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M+ + P+ VY IDG + G EA K+ + T + L+
Sbjct: 311 AKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVR 370
Query: 264 GLCKIGRLKIAW--------------------------------DIFHML--MQNPGLTP 289
GLCK+G++ A D F +L M+N G++P
Sbjct: 371 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISP 430
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V TY+IMIHG C+ G+ +KA+ LL +M GL+PN
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPN 466
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 84/368 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN-----LFEEM 75
P++ +NSLI GL GR+ E+ + F ++ PN T++ L L E++
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 559
Query: 76 VNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
V KP+ V ++++ K M+DQG+ D ++ NLS
Sbjct: 560 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 619
Query: 125 DGKME-----------------------------------EANCLLEVMIQRDVNPNTCT 149
G ME +A +L+ M ++ V+PN
Sbjct: 620 SGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 679
Query: 150 YNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YN L+DG + +KG + +Y LI+G CK ++ +A L EML
Sbjct: 680 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 739
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+ GI DA Y+ L ++ L + F++E M + + +I
Sbjct: 740 ATGITPDAFVYSVLTTGCSSA-----------GDLEQAMFLIEEMFL-------RGHASI 781
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ N L+DG CK G+++ + H++M GL P+ +T +I G + G+ + + + +
Sbjct: 782 SSFNNLVDGFCKRGKMQETLKLLHVIMGR-GLVPNALTIENIISGLSEAGKLSEVHTIFV 840
Query: 316 DMEETGLE 323
++++ E
Sbjct: 841 ELQQKTSE 848
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 33/235 (14%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M ++G + VT NV+ L + G +EEA + M + P+ TY L++G +
Sbjct: 248 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRR 307
Query: 163 G--------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ +V Y LI+G+ ++ N ++A + +EM++ G++ + TY+
Sbjct: 308 SNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDN 367
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M ++ PD+ Y I+G +++ +A ++ S + N
Sbjct: 368 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG 427
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ T + +I GLC+ G + A D+ M GL P+ Y +I G+C+EG
Sbjct: 428 ISPNVYTYSIMIHGLCQSGEPEKASDLLEE-MTTKGLKPNAFVYAPLISGYCREG 481
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 144/328 (43%), Gaps = 42/328 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F +L I + P++ ++SLI GLC +A + +++ DPN++ +
Sbjct: 621 GNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 680
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A N+F ++ + G++ P+ VT T++IDG CK G
Sbjct: 681 NALIDGLCKSGDISYARNVFNSILAK-GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNE 737
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +V+T S G +E+A L+E M R + + ++N L+DGF K
Sbjct: 738 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGK 796
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + + +I+G + + + ++ E+ + + A +++
Sbjct: 797 MQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSS 856
Query: 209 LFMAINN---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
LFM + N +P D V I K G + +A+ + I + + ++D L
Sbjct: 857 LFMDMINQGKIPLD--VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNL 914
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
C+ G+L A ++ + + L P +V
Sbjct: 915 CRKGKLSEALNLLKEMDKRGNLQPTLVA 942
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 157/344 (45%), Gaps = 79/344 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+ +L S +PN+ T+N LI+G C G + A R F ++ C PNV+T+NTL
Sbjct: 192 VFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTL----- 246
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
IDG CK DGF M +G+ P++++ NV+
Sbjct: 247 ------------------------IDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI 282
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ L ++G+M+E + +L M +R + + TYNT LI GYC
Sbjct: 283 NGLCREGRMKEISFVLTEMNKRGYSLDEVTYNT---------------------LIKGYC 321
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K+ N A+ + EML G+ TY +L M + + P+
Sbjct: 322 KEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNER 381
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YTT +DG + G++ EA +V + ++ ++ T N LI+G C G++ A +
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED- 440
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GLTPDVV+Y+ ++ GFC+ +A + M G++P+
Sbjct: 441 MKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPD 484
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 182/417 (43%), Gaps = 105/417 (25%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
GF LL + + PN++++N +I GLC EGR+ E + + ++N + +T+NTL
Sbjct: 259 GFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIK 318
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQ----G 107
AL + EM+ G+ P V+T T++I +CK G M +DQ G
Sbjct: 319 GYCKEGNFHQALVMHAEMLRH-GL--SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRG 375
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------- 158
+ P+ T + D S+ G M EA +L+ MI +P+ TYN L++G
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI 435
Query: 159 -----WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
KG DV SY+ +++G+C+ +V++A+ + R+M+++GI+ D TY++L
Sbjct: 436 AVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF 495
Query: 211 ---------------MAINNVPPDSHVYT------------------------------- 224
M +PPD YT
Sbjct: 496 CEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDV 555
Query: 225 -TY---IDGLYKNGFVLEAMKVFSAIGNHKCVLT-------IETCN--------CLIDGL 265
TY I+GL K EA ++ + + V + IE C+ LI G
Sbjct: 556 VTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
C G + A +F +++ PD YN+MIHG C+ G +KA L +M ++G
Sbjct: 616 CMKGMMTEADQVFESMLEK-NHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGF 671
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK-M 128
++F+ +V + +C D +I+ GFM P V++ N + D + + +
Sbjct: 135 SVFDLVVKSYSRLCLID--KALSIVHLSQAHGFM------PGVLSYNAVLDATIRSKRNI 186
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
A + + M+Q V+PN TYN L+ GF KGC +V +YN L
Sbjct: 187 SFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTL 246
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+GYCK R ++D L R M +G+ + +YN + I+GL + G
Sbjct: 247 IDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVV-----------------INGLCREG 289
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ E V + + L T N LI G CK G A + H M GL+P V+TY
Sbjct: 290 RMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQAL-VMHAEMLRHGLSPSVITY 348
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IH CK G +A L M GL PN
Sbjct: 349 TSLIHSMCKAGNMNRATEFLDQMRVRGLCPN 379
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 161/377 (42%), Gaps = 58/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR L ++ F + T +I C +G + F K+ PNVI
Sbjct: 237 MGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVIN 296
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
F L A L EEMV KP+V T T +IDGLCK G+
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGW---KPNVYTHTTLIDGLCKKGWTEKAFRLFL 353
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-- 158
+ G +P+V T M + K+ K+ A LL M ++ + PNT TY TL+DG
Sbjct: 354 KLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKV 413
Query: 159 ------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+G ++Y+YN +I+G CK ++++A L ++ G++AD TY
Sbjct: 414 GNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTY 473
Query: 207 NTLFMAIN-------------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
T+ M+++ PD H YTT I + + E+ ++F
Sbjct: 474 -TILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAV 532
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ + T +T +I G C+ G +A +F M N G PD +TY +I G CKE +
Sbjct: 533 SLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQR-MSNHGCAPDSITYGALISGLCKESKL 591
Query: 308 QKANGLLLDMEETGLEP 324
A L M + GL P
Sbjct: 592 DDARNLYDAMMDKGLSP 608
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 146/331 (44%), Gaps = 72/331 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P+ V+F ++ C GR+LEA + A+V E
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAEKWLN-----------------AMV----------ER 253
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
G I D TCT IID C+ G+ M++ G+ P+V+ + + L K G ++
Sbjct: 254 GFIV--DNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIK 311
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK------------GCRHDVYSYNIL 174
+A LLE M++R PN T+ TL+DG W K G + +V++Y +
Sbjct: 312 QAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAM 371
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
INGYCK+ + A L M +G+ P+++ YTT IDG K G
Sbjct: 372 INGYCKEDKLNRAEMLLSRMQEQGL-----------------VPNTNTYTTLIDGHCKVG 414
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A ++ +G I T N +IDGLCK G L A+ + + + + GL D VTY
Sbjct: 415 NFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH-GLQADGVTY 473
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I++ C++ ++ M + G P+
Sbjct: 474 TILMSVHCRQADTNRSLVFFNKMLKVGFTPD 504
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 31/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT----------CTYNT 152
M +QG+ TLN + D G +E A + M QR V+P+ C
Sbjct: 180 MQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR 239
Query: 153 LMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+++ W + +G D + ++I+ +C+ V V +M+ G+
Sbjct: 240 VLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGL--------- 290
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +T I+GL K G + +A ++ + + T LIDGLCK
Sbjct: 291 --------APNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKK 342
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A+ +F L+++ G P+V TY MI+G+CKE + +A LL M+E GL PN
Sbjct: 343 GWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 126/315 (40%), Gaps = 58/315 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+PN+ T+N++I GLC +G + EA RL K++V + +T+ L
Sbjct: 431 FSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTIL-------------- 476
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
V C+ + L M+ G PD+ + + + +M+E+ L E
Sbjct: 477 MSVHCRQ-----ADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEA 531
Query: 139 IQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRNV 184
+ + P TY +++ G+ + + GC D +Y LI+G CK+ +
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA +L M+ +G+ T TL DS +D L K +
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCK-KDDSSTAINVLDRLEKRQW--------- 641
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
I T N L+ LC G+L +A FH L+ P+V + + GF +
Sbjct: 642 ----------IRTVNTLVRKLCSEGKLDMAALFFHKLLDKE---PNV--NRVTLLGFMNK 686
Query: 305 GQHQKANGLLLDMEE 319
GL+ ++ E
Sbjct: 687 CYESNKYGLVSELSE 701
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+NG + EA+ + + N V + +T NC++D +G ++IA ++F + Q G++PD
Sbjct: 166 ENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQR-GVSPDC 224
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
V++ +M+ C G+ +A L M E G
Sbjct: 225 VSFKLMVVACCNMGRVLEAEKWLNAMVERGF 255
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L R+ P+ +T+ +LI GLC E ++ +A L+ + P +T
Sbjct: 554 GNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
TLA + K D T N++D L K R + T+N +
Sbjct: 614 LTLA-------------YEYCKKDDSSTAINVLDRLEK---------RQWIRTVNTLVRK 651
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCT 149
L +GK++ A ++ ++ N N T
Sbjct: 652 LCSEGKLDMAALFFHKLLDKEPNVNRVT 679
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 161/377 (42%), Gaps = 58/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR L ++ F + T +I C +G + F K+ PNVI
Sbjct: 237 MGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVIN 296
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
F L A L EEMV KP+V T T +IDGLCK G+
Sbjct: 297 FTALINGLCKQGSIKQAFELLEEMVRRGW---KPNVYTHTTLIDGLCKKGWTEKAFRLFL 353
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-- 158
+ G +P+V T M + K+ K+ A LL M ++ + PNT TY TL+DG
Sbjct: 354 KLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKV 413
Query: 159 ------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+G ++Y+YN +I+G CK ++++A L ++ G++AD TY
Sbjct: 414 GNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTY 473
Query: 207 NTLFMAIN-------------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
T+ M+++ PD H YTT I + + E+ ++F
Sbjct: 474 -TILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAV 532
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ + T +T +I G C+ G +A +F M N G PD +TY +I G CKE +
Sbjct: 533 SLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQR-MSNHGCAPDSITYGALISGLCKESKL 591
Query: 308 QKANGLLLDMEETGLEP 324
A L M + GL P
Sbjct: 592 DDARNLYDAMMDKGLSP 608
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 146/331 (44%), Gaps = 72/331 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P+ V+F ++ C GR+LEA R A+V E
Sbjct: 221 SPDCVSFKLMVVACCNMGRVLEAERWLN-----------------AMV----------ER 253
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
G I D TCT IID C+ G+ M++ G+ P+V+ + + L K G ++
Sbjct: 254 GFIV--DNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIK 311
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK------------GCRHDVYSYNIL 174
+A LLE M++R PN T+ TL+DG W K G + +V++Y +
Sbjct: 312 QAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAM 371
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
INGYCK+ + A L M +G+ P+++ YTT IDG K G
Sbjct: 372 INGYCKEDKLNRAEMLLSRMQEQGL-----------------VPNTNTYTTLIDGHCKVG 414
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A ++ +G I T N +IDGLCK G L A+ + + + + GL D VTY
Sbjct: 415 NFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVH-GLQADGVTY 473
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I++ C++ ++ M + G P+
Sbjct: 474 TILMSVHCRQADTNRSLVFFNKMLKVGFTPD 504
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 31/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT----------CTYNT 152
M +QG+ P TLN + D G +E A + M QR V+P+ C
Sbjct: 180 MQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR 239
Query: 153 LMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+++ W + +G D + ++I+ +C+ V V +M+ G+
Sbjct: 240 VLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGL--------- 290
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +T I+GL K G + +A ++ + + T LIDGLCK
Sbjct: 291 --------APNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKK 342
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A+ +F L+++ G P+V TY MI+G+CKE + +A LL M+E GL PN
Sbjct: 343 GWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPN 399
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 126/315 (40%), Gaps = 58/315 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+PN+ T+N++I GLC +G + EA RL K++V + +T+ L
Sbjct: 431 FSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTIL-------------- 476
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
V C+ + L M+ G PD+ + + + +M+E+ L E
Sbjct: 477 MSVHCRQ-----ADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEA 531
Query: 139 IQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRNV 184
+ + P TY +++ G+ + + GC D +Y LI+G CK+ +
Sbjct: 532 VSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA +L M+ +G+ T TL DS +D L K +
Sbjct: 592 DDARNLYDAMMDKGLSPCEVTRLTLAYEYCK-KDDSSTAINVLDRLEKRQW--------- 641
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
I T N L+ LC G+L +A FH L+ P+V ++ GF +
Sbjct: 642 ----------IRTVNTLVRKLCSEGKLDMAALFFHKLLDKE---PNVNRVTLL--GFMNK 686
Query: 305 GQHQKANGLLLDMEE 319
GL+ ++ E
Sbjct: 687 CYESNKYGLVSELSE 701
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+NG + EA+ + + N V + +T NC++D +G ++IA ++F + Q G++PD
Sbjct: 166 ENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQR-GVSPDC 224
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
V++ +M+ C G+ +A L M E G
Sbjct: 225 VSFKLMVVACCNMGRVLEAERWLNAMVERGF 255
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L R+ P+ +T+ +LI GLC E ++ +A L+ + P +T
Sbjct: 554 GNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR 613
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
TLA + K D T N++D L K R + T+N +
Sbjct: 614 LTLA-------------YEYCKKDDSSTAINVLDRLEK---------RQWIRTVNTLVRK 651
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCT 149
L +GK++ A ++ ++ N N T
Sbjct: 652 LCSEGKLDMAALFFHKLLDKEPNVNRVT 679
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 61/342 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+VT+++LI C GR+ +A F ++ +PN +++L + A
Sbjct: 440 PNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEF 499
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
EM+++ + +P++V ++II LC +G +MD G RP +VT N + D
Sbjct: 500 ISEMMSKG--LHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDG 557
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
GKME+A +L+ M+ + P+ T NTL ++GYCK
Sbjct: 558 YCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL---------------------VSGYCKS 596
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
++D + L REML + ++ TYN + M + D Y
Sbjct: 597 GKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTY 656
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL +N EA+ +F +G C I N +I+ L K+ R + A D+F +
Sbjct: 657 KILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAI-S 715
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P+V TY +MI KEG ++A+ + ME++G P+
Sbjct: 716 TSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPS 757
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 164/376 (43%), Gaps = 55/376 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G + R+L + + + +K LC R EA L +++ C P+ I++
Sbjct: 139 RPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISY 198
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ + AL++ + M E G C PDVV+ +I G K G
Sbjct: 199 NTVIKSLCGDSRSQEALDMVQRMAKEGGR-CSPDVVSFNTVIHGFFKQGEVSKACNLFNE 257
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PDV T N + D L K M++A +L M+ + V P+ TYN ++ G++
Sbjct: 258 MVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGH 317
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W SKG D +++ ++ CK +DA + + M ++G D +Y+
Sbjct: 318 WKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSI 377
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L MA + + H I K G + EAM VF+ +
Sbjct: 378 LLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQG 437
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + LI C++GRL A + F ++ + G+ P+ Y+ +IHGFC G KA
Sbjct: 438 VRPNVVTYSTLISAFCRMGRLADAMEKFSQMI-SIGIEPNTAVYHSLIHGFCMHGDLVKA 496
Query: 311 NGLLLDMEETGL-EPN 325
+ +M GL PN
Sbjct: 497 KEFISEMMSKGLHRPN 512
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 185/408 (45%), Gaps = 97/408 (23%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC--CDPNVITFNTL-- 64
VLL R+ P+ +++N++IK LC + R EA + +++ C P+V++FNT+
Sbjct: 181 VLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIH 240
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQG 107
A NLF EMV + GV+ PDV T +I+D LCK M +D+G
Sbjct: 241 GFFKQGEVSKACNLFNEMVQK-GVV--PDVGTYNSIVDALCKARAMDKAEFVLRQMVDKG 297
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------- 156
+ PD VT N + S G +E+ + M + + P+T T+++ M
Sbjct: 298 VEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAE 357
Query: 157 --FAWWS-KGCRHDVYSYNILINGYCKDRNVEDA------------VSLCR--------- 192
F + + KG D+ SY+IL++GY + D VS C
Sbjct: 358 EIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAH 417
Query: 193 --------------EMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
EM +G+R + TY+TL A + P++
Sbjct: 418 AKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNT 477
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
VY + I G +G +++A + S + G H+ I + +I LC GR+ A D+
Sbjct: 478 AVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRP--NIVFFSSIIHSLCIEGRVMDAQDV 535
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F++++ + G P +VT+N +I G+C G+ +KA G+L M G+EP+
Sbjct: 536 FNLVI-HIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 582
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 168/376 (44%), Gaps = 56/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L ++ P++ T+NS++ LC + +A + +++ +P+ +T+
Sbjct: 246 GEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTY 305
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + + +F +M ++ G+I PD VT ++ + LCK G +
Sbjct: 306 NAIIHGYSCSGHWKESAKMFRKMTSK-GLI--PDTVTFSSFMSSLCKHGRSKDAEEIFQY 362
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G PD+V+ +++ + +G+ + N L M + + N N L+ A
Sbjct: 363 MTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGM 422
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G R +V +Y+ LI+ +C+ + DA+ +M+S GI + Y++
Sbjct: 423 MDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHS 482
Query: 209 LF-------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M+ P+ +++ I L G V++A VF+ + +
Sbjct: 483 LIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHI 542
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
TI T N LIDG C +G+++ A+ + M + G+ PDVVT N ++ G+CK G+
Sbjct: 543 GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDA-MVSVGIEPDVVTNNTLVSGYCKSGKIDD 601
Query: 310 ANGLLLDMEETGLEPN 325
L +M ++P
Sbjct: 602 GLILFREMLHKKVKPT 617
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 133/304 (43%), Gaps = 51/304 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+V F+S+I LC EGR+++A +F + P ++TFN+L + L +M FG
Sbjct: 511 PNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSL-IDGYCLVGKMEKAFG 569
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
V+ M+ G+ PDVVT N + K GK+++ L M+
Sbjct: 570 VL------------------DAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLH 611
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVED 186
+ V P T TYN ++DG + G D+ +Y IL+ G C++ ++
Sbjct: 612 KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDE 671
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A++L ++ + + D T NT+ I+ LYK EA +F+AI
Sbjct: 672 AITLFHKLGAMDCKFDITILNTM-----------------INALYKVRRREEANDLFAAI 714
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
V + T +I L K G ++ A +F M+ G P N +I ++G
Sbjct: 715 STSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSS-MEKSGCAPSSRLLNDIIRMLLQKGD 773
Query: 307 HQKA 310
KA
Sbjct: 774 IVKA 777
>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
Length = 532
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 167/370 (45%), Gaps = 52/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV-FCCDPNVITFNTL- 64
F LG+I+ + N ++F +++ LC E R +A + + C P+V ++ L
Sbjct: 32 AFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLL 91
Query: 65 -ALVALNLFEEMVN------EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
L EE V+ E G C P+VV+ T +I G K+ M+D+G
Sbjct: 92 KGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRG 151
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ PDVVT N + D L K M++A +L M + + P+ TYN+L+ G+
Sbjct: 152 IPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAV 211
Query: 158 AWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---- 209
+ RH + +Y++LI+ CK +A + M+ + TY L
Sbjct: 212 RILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGY 271
Query: 210 --------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M N V PD H++ I K G + EAM F+ + + I
Sbjct: 272 ATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDI 331
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ +IDGLCKIGRL A F ++ + GL+PD+V + +IHGF G+ +KA L
Sbjct: 332 ISYGTMIDGLCKIGRLDAAMSQFCQMIDD-GLSPDIVVFTNLIHGFSMYGKWEKAEELFY 390
Query: 316 DMEETGLEPN 325
+M + G+ P
Sbjct: 391 EMMDRGIRPT 400
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 166/394 (42%), Gaps = 92/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLAL---------VA 68
TP++ ++ L+KGLC E + EA L + + C PNV+++ T+ A
Sbjct: 81 TPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKA 140
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------------------------- 99
LF EM++ G+ PDVVTC +IIDGLCK
Sbjct: 141 YTLFCEMLDR-GI--PPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSL 197
Query: 100 -DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
G+ M G P+ VT +++ D L K G EA +L MIQ
Sbjct: 198 VHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRG 257
Query: 144 NPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
NPN TY L+ G+A G R D + +NI I Y K +++A+
Sbjct: 258 NPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAML 317
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+M +G+ D +Y T+ M + + PD V+T I G
Sbjct: 318 TFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFS 377
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +A ++F + + T+ +ID L K G++ A +F LM + P+V
Sbjct: 378 MYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFD-LMPIASVKPNV 436
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+YN +IHG+ G+ + LL DM GL+PN
Sbjct: 437 VSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPN 470
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++ P+++++ ++I GLC GR+ A F ++ P+++ F
Sbjct: 310 GRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVF 369
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A LF EM++ G+ +P VV T +ID L K+G
Sbjct: 370 TNLIHGFSMYGKWEKAEELFYEMMDR-GI--RPTVVVFTTMIDKLFKEGKVTEAKTLFDL 426
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M ++P+VV+ N + GK++E LL+ M+ + PN T+NTL+D S
Sbjct: 427 MPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDM--LSM 484
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G + DV + N LI+ C+D +ED ++L REMLS+ + D T N +
Sbjct: 485 GLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTENII 531
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 145/348 (41%), Gaps = 71/348 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ T+NSL+ G + G++ EA R+ K+++ PN +T++ L A +
Sbjct: 189 PDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREI 248
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
M+ G P+V T ++ G G M+ G+RPD N+
Sbjct: 249 LNSMIQSRG---NPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYA 305
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------AWWSKGCR-------HD 167
K G+++EA M Q+ + P+ +Y T++DG A S+ C+ D
Sbjct: 306 YVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPD 365
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ + LI+G+ E A L EM+ GIR P V+TT I
Sbjct: 366 IVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIR-----------------PTVVVFTTMI 408
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL----KIAWDI------ 277
D L+K G V EA +F + + + N +I G G+L K+ D+
Sbjct: 409 DKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLK 468
Query: 278 -----FHML---MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
F+ L M + GL PDV T N +I C++G+ + L +M
Sbjct: 469 PNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREM 516
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 132/320 (41%), Gaps = 68/320 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLALV 67
+L ++ S PN+ T+ L+ G T+G ++E L + N D ++ A V
Sbjct: 248 ILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYV 307
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+E + F + + PD+++ +IDGLCK G M+D G+ PD+V
Sbjct: 308 KCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIV 367
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+ S GK E+A L M+ R + P + T++D K
Sbjct: 368 VFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLM 427
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--MAINNVP 217
+ +V SYN +I+GY +++ + L +MLS G++ +A T+NTL M +
Sbjct: 428 PIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLK 487
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD + TCN LID C+ GR++ +
Sbjct: 488 PD-----------------------------------VATCNTLIDSCCEDGRIEDVLTL 512
Query: 278 FHMLMQNPGLTPDVVTYNIM 297
F ++ T D VT NI+
Sbjct: 513 FREMLSKAAKT-DTVTENII 531
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 57/221 (25%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
SK +Y ILI+ C + A + +++ G+RA+A ++ +
Sbjct: 6 SKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTS 65
Query: 211 ----MAINNVP-----PDSHVY-------------------------------------T 224
+ I P PD Y T
Sbjct: 66 DAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYT 125
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T I G +K V +A +F + + + TCN +IDGLCK+ + A ++ M +
Sbjct: 126 TVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQ-MFD 184
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD TYN ++HG+ GQ ++A +L M G PN
Sbjct: 185 KHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPN 225
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 155/344 (45%), Gaps = 53/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------- 65
++L + P FN L++ L G + A +F ++ V++FNT+
Sbjct: 106 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 165
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVT 114
L ++E GV PDV T +I GLC+ G + D +GM+P+ V
Sbjct: 166 DLDGAETLHRRMSEAGVT--PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 223
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
++ D K G E L M +R V P+ TYN +++G
Sbjct: 224 FTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 283
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----- 215
S G R D +Y LI+GYCK+ ++ A+ + + M++EG+ D TY L ++
Sbjct: 284 SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSA 343
Query: 216 -------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ PD+ YT ID + G V +++ + N + T N ++
Sbjct: 344 DAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIM 403
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+G CK+G++K A D+ M N G++PD +TYNI++ G CK G+
Sbjct: 404 NGFCKLGQMKNA-DMLLNAMINIGVSPDDITYNILLDGHCKHGK 446
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 145/325 (44%), Gaps = 52/325 (16%)
Query: 43 ARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG- 101
A+LF NV D ++ LA A N+F+EM + GV + VV+ +I G+C+ G
Sbjct: 116 AKLF---NVLMRD--LVRLGELA-SAQNVFDEMQSR-GV--RRTVVSFNTMISGMCRAGD 166
Query: 102 ---------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
M + G+ PDV T + L + G++E+A + E M R + PN +
Sbjct: 167 LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 226
Query: 153 LMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
L+D +G R D +YN ++NG C+ R+++ A + EM S G
Sbjct: 227 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 286
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+R D TY TL M V D YT I GL K G +A
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 346
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+V + T +ID C+ G +K + MQN G P VVTYN++++G
Sbjct: 347 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE-MQNKGRKPGVVTYNVIMNG 405
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FCK GQ + A+ LL M G+ P+
Sbjct: 406 FCKLGQMKNADMLLNAMINIGVSPD 430
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 54/298 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L R+ + TP++ T+ +LI+GLC GRI +A +F+K+ PN + F
Sbjct: 165 GDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVF 224
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF--- 102
L A L L EM E GV +PD VT I++GLC+ G
Sbjct: 225 TILIDAHCKKGDAETMLELHREM-RERGV--RPDAVTYNAIVNGLCRARDLKSASGIVVE 281
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+RPD VT + D K+ +++ A + + M+ V + TY L+ G + +
Sbjct: 282 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +Y ++I+ +C+ +V+ + L +EM ++G + TYN
Sbjct: 342 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 401
Query: 209 LF-------------MAIN-----NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ M +N V PD Y +DG K+G V + ++ SA G
Sbjct: 402 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGT 459
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 164/360 (45%), Gaps = 57/360 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P++VT++++I GLC G++ EA + +++ +P+V T+ + A
Sbjct: 6 FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF +M+ E G C + V +I+GLCKD M +G PD +T N +
Sbjct: 66 ELFHKMI-ERG--CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW--------WSKG 163
L + GK+ EA + M R +P+ YN L+D AW +
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK 182
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
D+ +YN LI+G+C+ ++A+ L ++++++G D TYN++ + +
Sbjct: 183 VAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 242
Query: 214 --------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ P+ Y+ + G + G + ++++ + + + CN +ID L
Sbjct: 243 EMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDML 302
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK ++ A + M G PDVVTYNI++ G CK KA+ L M + G P+
Sbjct: 303 CKAKKVDDAHKVLEE-MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 361
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 166/358 (46%), Gaps = 55/358 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
P+++T+N+LI G C + EA +LFK + P+ +T+N++ L A
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
+F++MV+ C P+ T + ++ G C+ G M ++ PDV+ N + D
Sbjct: 244 MFKKMVDSG---CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVID 300
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K K+++A+ +LE M + P+ TYN L+DG GC
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAP 360
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D+ SY++++NG CK V DA L M+ + D T+N L
Sbjct: 361 DIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL 420
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M+ +NV PD TT + GL ++ EA+++F + V + N ++ GLC+
Sbjct: 421 DVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCRE 480
Query: 269 GRLKIAWDIFHMLMQNPG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L A F ++++ G +PDVVTY +++ + G+ +A M +G P+
Sbjct: 481 GKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPD 538
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 163/352 (46%), Gaps = 52/352 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
+ LL + + P+ +T+N+++ GLC G++ EA + F + P+V+ +N L L
Sbjct: 99 AYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGL-L 157
Query: 67 VALNLFEEMVNEFGVI---------CKPDVVTCTNIIDGLCK----DGFM------MDQG 107
AL ++ +G+ PD++T +IDG C+ D M + +G
Sbjct: 158 DALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKG 217
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
PD VT N + L++ M+EA + + M+ PN TY+ ++ G
Sbjct: 218 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCL 277
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
K DV N +I+ CK + V+DA + EM G D TYN L
Sbjct: 278 ELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNIL---- 333
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+DGL K V +A ++FS + ++ C I + + +++GLCK ++
Sbjct: 334 -------------LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHD 380
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F +++ L PDVVT+NI++ G CK G+ +A LL M E + P+
Sbjct: 381 ARVLFDRMIERK-LVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPD 431
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 177/374 (47%), Gaps = 72/374 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R+L+ F P+ +T+ L+ GLC G++ EA ++ K+ PN NTL
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYV 365
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
A LN E M+N FG +PD+ T ++ GLCK+G M +G
Sbjct: 366 MSGQLKEAQSFLN--ETMIN-FGF--QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG 420
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
P+V+T ++ + L K G +EEA +L M R + N+ YN L+
Sbjct: 421 CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVAL 480
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+KGC+ D+++YN LI G CK +++A L ML +G A+ TYNTL A+
Sbjct: 481 NLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540
Query: 214 NNVPPDSHVYTTYIDGLYK---------NGFVLEAMKVFSAIGNHKCVLTIE-------- 256
T D L++ NG + K F +GN + L +
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLI----KAFCKVGNIEKGLELYEQMIMDGL 596
Query: 257 -----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+CN +I+GLCK+G++ A++ + N G PD+VTYN +++G CK G+ ++A
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAI-NRGFVPDIVTYNSVLNGLCKVGRIKEAL 655
Query: 312 GLLLDMEETGLEPN 325
L ++ G+ P+
Sbjct: 656 NLFDRLQVEGVRPD 669
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 144/342 (42%), Gaps = 61/342 (17%)
Query: 4 ASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNV 58
A G F L+ ++LM +V F ++K G+ +A RL + V+ C+P
Sbjct: 124 AIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEP-- 181
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
TF + LV E +V C + + D M+ +G+ P V T ++
Sbjct: 182 -TFKSYDLV----LEILVTG----------NCPQVATNVFYD--MLSKGVSPTVFTFGIV 224
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L +++ A LL M + PN+ Y TL+ + ++ GC
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV ++N +I+G CK + DA L ML G D TY L
Sbjct: 285 MPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL--------------- 329
Query: 225 TYIDGLYKNGFVLEAMKVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL + G + EA K+ I + +L N LI+G G+LK A + M
Sbjct: 330 --LHGLCRIGKLNEARKILIKIPCPNNAIL-----NTLINGYVMSGQLKEAQSFLNETMI 382
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G PD+ TYNI++HG CKEG A L+ +M G EPN
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPN 424
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 37/205 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---M 75
P++ T+NSLI GLC RI EA RLF + + N +T+NTL AL+ F++ +
Sbjct: 493 PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTL 552
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
VN+ C D +T +I CK G M+ G+ D ++ N+M + L K
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
GK++ A L I R P D+ +YN ++NG CK +
Sbjct: 613 VGKVDNAFEFLRDAINRGFVP---------------------DIVTYNSVLNGLCKVGRI 651
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
++A++L + EG+R DA TYNT
Sbjct: 652 KEALNLFDRLQVEGVRPDAFTYNTF 676
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L + F P++VT+NS++ GLC GRI EA LF +L V P+ T
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFT 672
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NT ++ E MVN+ C+ G+ + G P +T NV+
Sbjct: 673 YNT--FISWQCKEGMVND----------ACSFFYRGI-------ENGFVPSNLTWNVLVY 713
Query: 121 NLSKDGKME 129
L K E
Sbjct: 714 TLLKQSNQE 722
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCC 54
G L+ +L T + +T+N LIK C G I + L++++ + C
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603
Query: 55 DPNVITFNTLALVAL--NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+ I N L V N FE + + PD+VT ++++GLCK G + +
Sbjct: 604 N---IMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+G+RPD T N K+G + +A I+ P+ T+N L+
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVPSNLTWNVLV 712
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 61/364 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ 64
+ RI M PN T+ LI+G + G + A +L +++ + N + TL
Sbjct: 1 MARICM----PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCD 56
Query: 65 ---ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
+ AL F M + C PDV+T T ++ LCK G M+ +G PD
Sbjct: 57 AGRVVEALEHFRAMAKD----CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPD 112
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VT + + D L K G E+A +LE +IQR + + + T++
Sbjct: 113 TVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVL 172
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+KG V +N++ING+CK ++++ A L M+ +G + T+ L
Sbjct: 173 GVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA 232
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M P+ Y+T I+GL K G V +A ++F + C + T
Sbjct: 233 NRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTH 292
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDGLCK R++ A ++H M+ G PD++TYN +I G CK Q +A L +
Sbjct: 293 NILIDGLCKAKRIEEARQLYHR-MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIP 351
Query: 319 ETGL 322
E+G+
Sbjct: 352 ESGV 355
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 165/365 (45%), Gaps = 50/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL + + F N V +L+KGLC GR++EA F+ + C P+V+T+ L AL
Sbjct: 31 LLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCA-PDVMTYTALVHALC 89
Query: 68 ALNLFEE---MVNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
F+E M+ E C PD VT + +IDGLCK G ++ +GM
Sbjct: 90 KAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDA 149
Query: 114 TLNVMTDNL-SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
+ L +K +E A+ +L V+I + P +N +++GF
Sbjct: 150 AFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEV 209
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------- 209
KGC +V+++ ILI G CK V +A L +M++ G + TY+T+
Sbjct: 210 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQ 269
Query: 210 ---------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M N PP+ + IDGL K + EA +++ + C I T N
Sbjct: 270 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 329
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK ++ A+ +F + ++ + VTY+ + HG+ G+ A + + +
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389
Query: 321 GLEPN 325
G P+
Sbjct: 390 GFSPD 394
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 143/340 (42%), Gaps = 52/340 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEEMV 76
P+++T+NSLI GLC ++ EA +LF+ + N +T++TL AL +
Sbjct: 321 APDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADAC 380
Query: 77 NEFGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
F ++ PD+ T T++I CK M +G P V TL+ + L
Sbjct: 381 RIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGL 440
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH---------------- 166
+ E A L + M R + YN +++G A SK +
Sbjct: 441 FEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFN 500
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ + L+ C+ +DA L +M G A ++YN L
Sbjct: 501 PSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGL---------------- 544
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ GL + EA +VF A+ + I T N +I LC ++ A+++ M
Sbjct: 545 -LSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQR-MSKL 602
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PD+ T N +I G+CK G+ A LL +M E GLEPN
Sbjct: 603 GCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 642
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 33/248 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------------- 156
P+ T ++ S G ++ A LLE M N + TLM G
Sbjct: 7 PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
F +K C DV +Y L++ CK ++A + REM++ G D T++TL +
Sbjct: 67 FRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKF 126
Query: 217 PPDSHVYTTYID----GLYKNGFVLE---------------AMKVFSAIGNHKCVLTIET 257
+ + D G+ + E A KV + T+
Sbjct: 127 GSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLM 186
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N +I+G CK L A+ + ++++ G P+V T+ I+I G CK + +A LL M
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEK-GCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245
Query: 318 EETGLEPN 325
G PN
Sbjct: 246 VTGGCSPN 253
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 128/318 (40%), Gaps = 64/318 (20%)
Query: 7 GFVLLGRILMSC----------FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G+ LGR+ +C F+P++ T+ SLI C R +E L +++ P
Sbjct: 369 GYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPP 428
Query: 57 NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLN 116
V NTL+ V LFE E + + D M +G D + N
Sbjct: 429 RV---NTLSAVLGGLFEGNHTERAI----------QLFDS------MAARGCTDDALIYN 469
Query: 117 VMTDNLSKDGKMEEANCLLEVMI---QRDVNPNTCTYNTLMDGF--------------AW 159
++ + +++ K +A +LE +I R NP++ + L++
Sbjct: 470 LVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKM 529
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+G V SYN L++G + + ++A + M+S G + +T N +
Sbjct: 530 SERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVV---------- 579
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I L V +A ++ + C IETCN LI G CK GR +A +
Sbjct: 580 -------ISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLE 632
Query: 280 MLMQNPGLTPDVVTYNIM 297
M GL P+ T++++
Sbjct: 633 E-MTEAGLEPNDTTHDLL 649
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 177/374 (47%), Gaps = 72/374 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R+L+ F P+ +T+ L+ GLC G++ EA ++ K+ PN NTL
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYV 365
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
A LN E M+N FG +PD+ T ++ GLCK+G M +G
Sbjct: 366 MSGQLKEAQSFLN--ETMIN-FGF--QPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRG 420
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
P+V+T ++ + L K G +EEA +L M R + N+ YN L+
Sbjct: 421 CEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVAL 480
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+KGC+ D+++YN LI G CK +++A L ML +G A+ TYNTL A+
Sbjct: 481 NLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540
Query: 214 NNVPPDSHVYTTYIDGLYK---------NGFVLEAMKVFSAIGNHKCVLTIE-------- 256
T D L++ NG + K F +GN + L +
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLI----KAFCKVGNIEKGLELYEQMIMDGL 596
Query: 257 -----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+CN +I+GLCK+G++ A++ + N G PD+VTYN +++G CK G+ ++A
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAI-NRGFVPDIVTYNSVLNGLCKVGRIKEAL 655
Query: 312 GLLLDMEETGLEPN 325
L ++ G+ P+
Sbjct: 656 NLFDRLQVEGVRPD 669
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 144/342 (42%), Gaps = 61/342 (17%)
Query: 4 ASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNV 58
A G F L+ ++LM +V F ++K G+ +A RL + V+ C+P
Sbjct: 124 AIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEP-- 181
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
TF + LV E +V C + + D M+ +G+ P V T ++
Sbjct: 182 -TFKSYDLV----LEILVTG----------NCPQVATNVFYD--MLSKGVSPTVFTFGIV 224
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L +++ A LL M + PN+ Y TL+ + ++ GC
Sbjct: 225 MKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGC 284
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV ++N +I+G CK + DA L ML G D TY L
Sbjct: 285 MPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFL--------------- 329
Query: 225 TYIDGLYKNGFVLEAMKVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL + G + EA K+ I + +L N LI+G G+LK A + M
Sbjct: 330 --LHGLCRIGKLNEARKILIKIPCPNNAIL-----NTLINGYVMSGQLKEAQSFLNETMI 382
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G PD+ TYNI++HG CKEG A L+ +M G EPN
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPN 424
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 37/205 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---M 75
P++ T+NSLI GLC RI EA RLF + + N +T+NTL AL+ F++ +
Sbjct: 493 PDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTL 552
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
VN+ C D +T +I CK G M+ G+ D ++ N+M + L K
Sbjct: 553 VNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCK 612
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
GK++ A L I R P D+ +YN ++NG CK +
Sbjct: 613 VGKVDNAFEFLRDAINRGFVP---------------------DIVTYNSVLNGLCKVGRI 651
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
++A++L + EG+R DA TYNT
Sbjct: 652 KEALNLFDRLQVEGVRPDAFTYNTF 676
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L + F P++VT+NS++ GLC GRI EA LF +L V P+ T
Sbjct: 613 VGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFT 672
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NT ++ E MVN+ C G+ + G P +T NV+
Sbjct: 673 YNT--FISWQCKEGMVND----------ACLFFYRGI-------ENGFVPSNLTWNVLVY 713
Query: 121 NLSKDGKME 129
L K E
Sbjct: 714 TLLKQSNQE 722
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCC 54
G L+ +L T + +T+N LIK C G I + L++++ + C
Sbjct: 544 GAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC 603
Query: 55 DPNVITFNTLALVAL--NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+ I N L V N FE + + PD+VT ++++GLCK G + +
Sbjct: 604 N---IMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+G+RPD T N K+G + +A I+ P+ T+N L+
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVPSNLTWNVLV 712
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 157/362 (43%), Gaps = 62/362 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF +LG++ +PN+V + +LI G C G I +LF K+ N T
Sbjct: 164 VGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYT 223
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----PDVVTL 115
+ L +N F +M GL KDG + + M+ P+V T
Sbjct: 224 YTVL----INGFFKM--------------------GLKKDGIELYEKMKLTGIVPNVYTY 259
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N M DGK+ A L + M +R V N TYNTL+ G +
Sbjct: 260 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 319
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
G ++ SYN LI+GYC N++ A SL +M S G TYN L
Sbjct: 320 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAG 379
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P YT +D L ++ + +A +++S++ V I LI
Sbjct: 380 VTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIH 439
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLC +G +K A +F L L P+ V YN MI+G+CKEG +A LL +M E G+
Sbjct: 440 GLCVVGDMKEASKLFKSL-DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMV 498
Query: 324 PN 325
PN
Sbjct: 499 PN 500
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 131/307 (42%), Gaps = 63/307 (20%)
Query: 56 PNVITFNTLA--LVALNLFEE---MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP 110
P TFN L L+ N FE+ + NE K DV + +I G C+ G++ D+G
Sbjct: 115 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYL-DKGF-- 171
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW 160
+V+ G+MEE ++PN Y TL+D G +
Sbjct: 172 EVL------------GQMEEMG----------LSPNVVVYTTLIDGCCKNGDIERGKQLF 209
Query: 161 SKGCRHDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
K DV Y+Y +LING+ K +D + L +M GI + TYN++
Sbjct: 210 YKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCND 269
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V + Y T I GL + VLEA ++ + + +
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 329
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG C IG L A +F+ M++ G +P + TYNI+I GF + ++ +ME
Sbjct: 330 NTLIDGYCSIGNLDKASSLFNQ-MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREME 388
Query: 319 ETGLEPN 325
GL P+
Sbjct: 389 ARGLSPS 395
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + F L + N+VT+N+LI GLC E R+LEA RL ++ PN+I++
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 329
Query: 62 NTL---------------------------ALVALNL----FEEMVNEFGVI-------- 82
NTL +L N+ F E N GV
Sbjct: 330 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 389
Query: 83 --CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P VT T ++D L + M G+ D+ V+ L G M+E
Sbjct: 390 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKE 449
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------DVYSYNILIN 176
A+ L + + + + PN YNT++ G+ R +V SYN I
Sbjct: 450 ASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIX 509
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
CKD +A L ++M+ G++ + +N + A
Sbjct: 510 ILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKA 545
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLM-----DGF---AWW----SKG-CRHDVYSYNILI 175
E+A MI R + P + T+N L+ F AW +KG + DVYS+ I+I
Sbjct: 99 EQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMI 158
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
G C+ ++ + +M G+ + Y TL M +V
Sbjct: 159 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 218
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+ + YT I+G +K G + ++++ + V + T N +I C G+L A+++
Sbjct: 219 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 278
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M+ G+ +VVTYN +I G C+E + +A L+ M+ GL PN
Sbjct: 279 FDE-MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPN 325
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-----NNV 216
+G +H S + +++ + SL +++S I + + T ++LF + ++
Sbjct: 19 QGXQHTHQSISFILHLLISSNLFSHSQSLLLKLISGQISSSSFTPSSLFHELTQPHLDSF 78
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P ++ I+ ++ +A+ + + V T N L+ L K + AW
Sbjct: 79 PTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 138
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F+ N L DV ++ IMI G C+ G K +L MEE GL PN
Sbjct: 139 VFNETKGNVKL--DVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPN 185
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats.
Identities = 101/360 (28%), Positives = 162/360 (45%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ VT+++LI C GR A +L ++ P + L + A
Sbjct: 1216 CF-PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 1274
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM +++ C+PDV T T +I GL K G M +G RPD V +N M
Sbjct: 1275 LSLFEEMRHQY---CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNM 1331
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++++A L + M P+ TYNT++ +W+ + G
Sbjct: 1332 INFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 1391
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 1392 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 1451
Query: 214 --------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
N + VY I L K G + +A+ +F + C + N L+ GL
Sbjct: 1452 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 1511
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G L A MQ G PD+ +YNI+++G K G +A +L +M+++ + P+
Sbjct: 1512 ARTGMLDEALSTMRR-MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 1570
Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats.
Identities = 76/330 (23%), Positives = 116/330 (35%), Gaps = 90/330 (27%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A G L + P++ T+ LI+GL GRI EA F ++ C P+ + N
Sbjct: 1271 AHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNN 1330
Query: 64 LALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------M 103
+ A+ LF+EM + C P VVT II L + M
Sbjct: 1331 MINFLGKAGRLDDAMKLFQEMET---LRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 1387
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+ G+ P T +++ D K +ME+A LLE M ++ P Y +L+D +
Sbjct: 1388 KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRY 1447
Query: 163 ------------------------------------------------GCRHDVYSYNIL 174
GC DVY+YN L
Sbjct: 1448 DLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNAL 1507
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
++G + +++A+S R M G D +YN + M + V
Sbjct: 1508 MSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTV 1567
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
PD Y T + L G EA K+ +
Sbjct: 1568 RPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 46/241 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF++L C + +
Sbjct: 1411 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 1470
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A+N+F+EM N+ G C PDV ++ GL + G M
Sbjct: 1471 VMIKHLGKAGRLDDAINMFDEM-NKLG--CAPDVYAYNALMSGLARTGMLDEALSTMRRM 1527
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G PD+ + N++ + L+K G A +L M Q V P
Sbjct: 1528 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP------------------ 1569
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
DV SYN ++ E+A L +EM + G D TY+++ AI V H Y
Sbjct: 1570 ---DVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV---DHEY 1623
Query: 224 T 224
T
Sbjct: 1624 T 1624
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
R+V N M F W +K HD +Y LI +C + V + +M+ E
Sbjct: 1084 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALI--HCLE--VVEQYGEMWKMIQEM 1139
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+R I V P + + L V +A+ +F I KC +
Sbjct: 1140 VRN----------PICVVTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAY 1187
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L G+ + +++ + PD VTY+ +I FCK G+ A LL +M+
Sbjct: 1188 NSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMK 1247
Query: 319 ETGLEP 324
E G++P
Sbjct: 1248 EIGMQP 1253
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++L PN+VT+N L+ GLC GR+ E L ++ P+ T+
Sbjct: 65 GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 124
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L + L+LF E + + GV+ TC+ +++GLCKDG
Sbjct: 125 SILFDGLTRTGESRTMLSLFAESLKK-GVML--GAYTCSILLNGLCKDGKVAKAEQVLEM 181
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++ G+ P V N + + + + A C+ E M R + P+ TYN L++G
Sbjct: 182 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 241
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G V ++N LI+ Y +E ++ +M +GI++D ++ +
Sbjct: 242 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 301
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ A +V P++ VY + ID ++G +A + + N
Sbjct: 302 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 361
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+I T N L+ GLC+ ++ A ++ + L +N GL PDVV+YN +I C +G KA
Sbjct: 362 VSASIVTYNLLLKGLCRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNKGDTDKA 420
Query: 311 NGLLLDMEETGLEP 324
LL +M + G+ P
Sbjct: 421 LELLQEMNKYGIRP 434
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 133/300 (44%), Gaps = 46/300 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
AL +F+EMV+ GV+ P+ +T +IDG K G M+ G +P++VT NV
Sbjct: 35 ALKVFDEMVD-MGVV--PNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNV 91
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKG 163
+ L + G+M+E L++ M + P+ TY+ L DG KG
Sbjct: 92 LLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG 151
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
Y+ +IL+NG CKD V A + ++ G+ YNTL
Sbjct: 152 VMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAF 211
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M ++ PD Y I+GL K V +A + + ++ET N LID
Sbjct: 212 CIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAY 271
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+L+ + + MQ G+ DV+++ ++ FCK G+ +A +L DM + PN
Sbjct: 272 GTAGQLEKCFTVLSD-MQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPN 330
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 143/331 (43%), Gaps = 51/331 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G F + ++ P+ +T+N+LI GLC + +A L ++ DP+V TFNTL
Sbjct: 209 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL- 267
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
++ +G + + C ++ M +G++ DV++ + K+
Sbjct: 268 ----------IDAYGTAGQLE--KCFTVLSD------MQQKGIKSDVISFGSVVKAFCKN 309
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA +L+ MI +DV PN YN+++D + + G + +Y
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N+L+ G C+ +++A L + ++G+R D +YNT+ A N
Sbjct: 370 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN---------------- 413
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +A+++ + + T+ T + L+ L GR+ + + M + + P
Sbjct: 414 -KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVH-DMECLYQQMLHKNVEPSS 471
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
Y IM+ + + K L +M E G+
Sbjct: 472 SIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 33/248 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------- 158
PD + NV+ L + GK +A + + M+ V PN TYNT++DG
Sbjct: 14 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73
Query: 159 ---WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G + ++ +YN+L++G C+ +++ L EM S + D TY+ LF +
Sbjct: 74 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133
Query: 216 VPPDSHVYTTY------------------IDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ + + ++GL K+G V +A +V + + V T
Sbjct: 134 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 193
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI+G C++ L+ A+ IF M++ + PD +TYN +I+G CK KA L+++M
Sbjct: 194 YNTLINGYCQVRDLRGAFCIFEQ-MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 252
Query: 318 EETGLEPN 325
E++G++P+
Sbjct: 253 EKSGVDPS 260
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
F +L + ++++F S++K C G+I EA + + PN +N++
Sbjct: 281 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 340
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
A L E+M N GV +VT ++ GLC+ + +QG+
Sbjct: 341 YIESGDTEQAFLLVEKMKNS-GV--SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 397
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD- 167
RPDVV+ N + G ++A LL+ M + + P TY+TL+ A S G HD
Sbjct: 398 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALA--SAGRVHDM 455
Query: 168 --VYS-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+Y Y I+++ Y + N SL +EM +GI D T
Sbjct: 456 ECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 507
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PPD+ Y I GL+++G +A+KVF + + V T N +IDG K G L+ +
Sbjct: 13 PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFR 72
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ + G P++VTYN+++ G C+ G+ + L+ +M + P+
Sbjct: 73 LRDQMLHD-GPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPD 120
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 161/334 (48%), Gaps = 48/334 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N VT+N LI GLC G + EA K + + P+ T+ L N + ++
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 337
Query: 77 NEFG-VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
+E KP+VV N+IDG ++G M+ G++P+ +T + + L K
Sbjct: 338 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 397
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSK-------------GCRHDVYSY 171
G+M+ A+ LL+ M++ P+T TYN +++G F SK G +VY+Y
Sbjct: 398 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 457
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I+I+G C+ E A L EM ++G++ P++ VY I G
Sbjct: 458 SIMIHGLCQSGEPEKASDLLEEMTTKGLK-----------------PNAFVYAPLISGYC 500
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G V A ++F + + + N LI GL K+GR++ + F MQ GL P+
Sbjct: 501 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ-MQERGLLPNE 559
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+ +IHG+ K G + A L+ M +TGL+PN
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 593
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A F ++ ++ + PN +T+++L++GLC G++ A+ L K++ P+ IT+
Sbjct: 363 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 422
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + A L EM N G+ P+V T + +I GLC+ G
Sbjct: 423 NLIIEGHFRHHSKKDAFRLLSEMENA-GI--SPNVYTYSIMIHGLCQSGEPEKASDLLEE 479
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G++P+ + ++G + A + + M + +V P+ YN+L+ G +
Sbjct: 480 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 539
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + ++Y+ LI+GY K+ ++E A L + ML G++ + Y
Sbjct: 540 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 599
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V D+ +Y I L +G + A +V S I +
Sbjct: 600 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNG 659
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + + LI GLCK + A+ I M G+ P++V YN +I G CK G A
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYA 718
Query: 311 NGLLLDMEETGLEPN 325
+ + GL PN
Sbjct: 719 RNVFNSILAKGLVPN 733
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 159/363 (43%), Gaps = 57/363 (15%)
Query: 16 MSC--FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
MSC PN+V + +LI G EG EA ++ K++ PN IT++ L
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDG-----LCKDGF-----MMDQGMRPDVVT 114
A L ++MV + +PD +T II+G KD F M + G+ P+V T
Sbjct: 400 MDRASLLLKQMVRDSH---RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYT 456
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---SKGCR------ 165
++M L + G+ E+A+ LLE M + + PN Y L+ G+ S C
Sbjct: 457 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMT 516
Query: 166 -----HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
D+Y YN LI G K VE++ +M G+ + TY+ L
Sbjct: 517 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 576
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + P+ +Y ++ +K+ + + F ++ + +L LI
Sbjct: 577 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 636
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
L G ++ A+ + + +N G PDV Y+ +I G CK +KA G+L +M + G+
Sbjct: 637 HNLSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 695
Query: 323 EPN 325
+PN
Sbjct: 696 DPN 698
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 130/311 (41%), Gaps = 71/311 (22%)
Query: 86 DVVTCTNIIDGLCKDG-----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
DV+ T G +D M D+GM P + N + +L + M + E M+
Sbjct: 178 DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVG 237
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
++P+ TY+TL++ + +GC + +YN+LI G C+ VE+
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A ++M G+ D TY L M+ + P+ VY ID
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW------------- 275
G + G EA K+ + T + L+ GLCK+G++ A
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417
Query: 276 -------------------DIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
D F +L M+N G++P+V TY+IMIHG C+ G+ +KA+ LL
Sbjct: 418 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 477
Query: 315 LDMEETGLEPN 325
+M GL+PN
Sbjct: 478 EEMTTKGLKPN 488
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 160/404 (39%), Gaps = 89/404 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F LL + + +PN+ T++ +I GLC G +A+ L +++ PN + L
Sbjct: 438 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 497
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
+A +F++M V PD+ ++I GL K G M ++G
Sbjct: 498 GYCREGNVSLACEIFDKMTK---VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 554
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ T + + K+G +E A L++ M+ + PN Y L++ +
Sbjct: 555 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 614
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+ +G D Y ILI+ N+E A + + G D Y++L
Sbjct: 615 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGL 674
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M+ V P+ Y IDGL K+G + A VF++I V
Sbjct: 675 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 734
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM------------------ 297
T LIDG CK+G + A+ +++ ++ G+TPD Y+++
Sbjct: 735 VTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIE 793
Query: 298 ----------------IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GFCK G+ Q+ LL + GL PN
Sbjct: 794 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPN 837
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 143/328 (43%), Gaps = 55/328 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKL-------NVFCCDPNVITFNTLALVALNLFEEMVNEF-- 79
L+ GR+ +AA + + ++ CC N + + L A+ L + V EF
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCC--NALLKDLLRADAMALLWK-VREFMV 236
Query: 80 GVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
G PDV T + +I+ CK F M ++G + VT NV+ L + G +E
Sbjct: 237 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVE 296
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHDVYSYNILI 175
EA + M + P+ TY L++G + + +V Y LI
Sbjct: 297 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 356
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G+ ++ N ++A + +EM++ G++ + TY+ L M ++
Sbjct: 357 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 416
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD+ Y I+G +++ +A ++ S + N + T + +I GLC+ G + A D+
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
M GL P+ Y +I G+C+EG
Sbjct: 477 LEE-MTTKGLKPNAFVYAPLISGYCREG 503
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 88/370 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN-----LFEEM 75
P++ +NSLI GL GR+ E+ + F ++ PN T++ L L E++
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 581
Query: 76 VNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
V KP+ V ++++ K M+DQG+ D ++ NLS
Sbjct: 582 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 641
Query: 125 DGKME-----------------------------------EANCLLEVMIQRDVNPNTCT 149
G ME +A +L+ M ++ V+PN
Sbjct: 642 SGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 701
Query: 150 YNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YN L+DG + +KG + +Y LI+G CK ++ +A L EML
Sbjct: 702 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 761
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA--IGNHKCVL 253
+ GI PD+ VY+ G G + +AM + + H
Sbjct: 762 ATGIT-----------------PDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA--- 801
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+I + N L+DG CK G+++ + H++M GL P+ +T +I G + G+ + + +
Sbjct: 802 SISSFNNLVDGFCKRGKMQETLKLLHVIMGR-GLVPNALTIENIISGLSEAGKLSEVHTI 860
Query: 314 LLDMEETGLE 323
+++++ E
Sbjct: 861 FVELQQKTSE 870
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 35/274 (12%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALN 70
IL PN VT+ SLI G C G I A L+ ++ P+ ++ L A +
Sbjct: 725 ILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGD 784
Query: 71 LFEEM--VNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVM 118
L + M + E + + + N++DG CK G M M +G+ P+ +T+ +
Sbjct: 785 LEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENI 844
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
LS+ GK+ E + + + Q+ +++L F + + + +I +
Sbjct: 845 ISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSL---FMDMINQGKIPLDVVDDMIRDH 901
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
CK+ N++ A+ ML + I A + P Y +D L + G + E
Sbjct: 902 CKEGNLDKAL-----MLRDVIVA------------KSAPMGCSSYLAIVDNLCRKGKLSE 944
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
A+ + + + C L+ L G ++
Sbjct: 945 ALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQ 978
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V +D K+G V +A +V + + +I CN L+ L + + + W +
Sbjct: 176 VLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKV-REF 234
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
M G++PDV TY+ +I +CK + A +L++M E G
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 274
>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
Length = 348
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 54/331 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F+ +++ F + V++ +LI GLC G A L ++++ N + +
Sbjct: 21 GQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 80
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NT+ A +L+ EMV++ G+ P+VVT + +I G G + D
Sbjct: 81 NTVIYGMCKDKHVNDAFDLYSEMVSK-GI--SPNVVTYSALISGFFVVGKLKDAIDLFNK 137
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ ++PD T N++ D KD KM+E + +M+++ + P+ TYN+L+DG+ +
Sbjct: 138 IILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKE 197
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ SYNILING+CK + V+ A++L EM + I + TYN+
Sbjct: 198 VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 257
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP+ Y + ID L+K V +A+ + + +
Sbjct: 258 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 317
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++ T LIDGLCK GRLK A +IF L
Sbjct: 318 IQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 159/344 (46%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ PN +T N+LIKGLC +G+I +A KL + +++ TL AL
Sbjct: 3 YHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 62
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+L + + G + + + V +I G+CKD M+ +G+ P+VVT + +
Sbjct: 63 DLLQRVD---GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 119
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
GK+++A L +I ++ P D Y++NIL++G+C
Sbjct: 120 SGFFVVGKLKDAIDLFNKIILENIKP---------------------DGYTFNILVDGFC 158
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
KDR +++ ++ M+ +GI D TYN+L MA V PD
Sbjct: 159 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIR 218
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y I+G K V +AM +F+ + + + T N LIDGL K GR+ A +
Sbjct: 219 SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQ- 277
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+ P+++TYN +I K Q KA L+ ++ G++P+
Sbjct: 278 MHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPS 321
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 33/251 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----- 161
G P+ +TLN + L G++ +A + ++ + + +Y TL+ G
Sbjct: 2 GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61
Query: 162 ---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
K + + YN +I G CKD++V DA L EM+S+GI + TY+ L
Sbjct: 62 LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ + N+ PD + + +DG K+ + E VF+ + +
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T N L+DG + + A IF+ + Q G+ PD+ +YNI+I+GFCK + KA L
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQG-GVNPDIRSYNILINGFCKIKKVDKAMNLF 240
Query: 315 LDMEETGLEPN 325
+M + PN
Sbjct: 241 NEMHCKNIIPN 251
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 38/228 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L +I++ P+ TFN L+ G C + ++ E +F + P+V+T
Sbjct: 125 VGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVT 184
Query: 61 FNTLA----LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-- 109
+N+L LV A ++F M + GV PD+ + +I+G CK +D+ M
Sbjct: 185 YNSLVDGYRLVKEVNTAKSIFNTMA-QGGV--NPDIRSYNILINGFCKIK-KVDKAMNLF 240
Query: 110 ---------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
P+VVT N + D LSK G++ A L++ M R V PN TYN+++D
Sbjct: 241 NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKT 300
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
+ +G + +Y+Y ILI+G CK ++DA ++ ++
Sbjct: 301 HQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 155/344 (45%), Gaps = 53/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------- 65
++L + P FN L++ L G + A +F ++ V++FNT+
Sbjct: 230 QLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAG 289
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVT 114
L ++E GV PDV T +I GLC+ G + D +GM+P+ V
Sbjct: 290 DLDGAETLHRRMSEAGVT--PDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVV 347
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
++ D K G E L M +R V P+ TYN +++G
Sbjct: 348 FTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMR 407
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----- 215
S G R D +Y LI+GYCK+ ++ A+ + + M++EG+ D TY L ++
Sbjct: 408 SAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSA 467
Query: 216 -------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ PD+ YT ID + G V +++ + N + T N ++
Sbjct: 468 DAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIM 527
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+G CK+G++K A D+ M N G++PD +TYNI++ G CK G+
Sbjct: 528 NGFCKLGQMKNA-DMLLNAMINIGVSPDDITYNILLDGHCKHGK 570
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 145/325 (44%), Gaps = 52/325 (16%)
Query: 43 ARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG- 101
A+LF NV D ++ LA A N+F+EM + GV + VV+ +I G+C+ G
Sbjct: 240 AKLF---NVLMRD--LVRLGELA-SAQNVFDEMQSR-GV--RRTVVSFNTMISGMCRAGD 290
Query: 102 ---------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
M + G+ PDV T + L + G++E+A + E M R + PN +
Sbjct: 291 LDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 350
Query: 153 LMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
L+D +G R D +YN ++NG C+ R+++ A + EM S G
Sbjct: 351 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 410
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+R D TY TL M V D YT I GL K G +A
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+V + T +ID C+ G +K + MQN G P VVTYN++++G
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE-MQNKGRKPGVVTYNVIMNG 529
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FCK GQ + A+ LL M G+ P+
Sbjct: 530 FCKLGQMKNADMLLNAMINIGVSPD 554
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 54/298 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L R+ + TP++ T+ +LI+GLC GRI +A +F+K+ PN + F
Sbjct: 289 GDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVF 348
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGF--- 102
L A L L EM E GV +PD VT I++GLC+ G
Sbjct: 349 TILIDAHCKKGDAETMLELHREM-RERGV--RPDAVTYNAIVNGLCRARDLKSASGIVVE 405
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+RPD VT + D K+ +++ A + + M+ V + TY L+ G + +
Sbjct: 406 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +Y ++I+ +C+ +V+ + L +EM ++G + TYN
Sbjct: 466 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 525
Query: 209 LF-------------MAIN-----NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ M +N V PD Y +DG K+G V + ++ SA G
Sbjct: 526 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGT 583
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 165/372 (44%), Gaps = 54/372 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G VL G IL + + +T ++L+K LC R EA L +++ C PNV ++
Sbjct: 172 RPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSY 231
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N+++ AL+LF+ M E G C P+VV +I G K+G
Sbjct: 232 SIILKGLCDNSMSQRALDLFQMMAKEGGA-CSPNVVAYNTVIHGFFKEGETGKACSLFHE 290
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M QG++PDVVT N++ D L K M++A +L M P+T TYN ++ G+A
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR 350
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G ++ N + CK ++A + M ++G + D +Y T
Sbjct: 351 LKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCT 410
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N + D V+ I K G V +AM +F+ +
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + +I ++GRL A + F+ ++ G+ P+ Y+ +I GFC G KA
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVAR-GIQPNTAVYHSIIQGFCMHGGLVKA 529
Query: 311 NGLLLDMEETGL 322
L+ +M G+
Sbjct: 530 KELVSEMINKGI 541
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 156/342 (45%), Gaps = 61/342 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++VT++++I GR+ +A F ++ PN ++++ + A
Sbjct: 472 SPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKE 531
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
L EM+N+ I +PD+V ++I+ LCKDG +MD G RPDV+T + D
Sbjct: 532 LVSEMINKG--IPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLID 589
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
GKM++A +L+ M V + TY+TL+D GY K
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLD---------------------GYFK 628
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH--------------V 222
+ + D ++L REM +G++ + TY LF A V +
Sbjct: 629 NGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSI 688
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y + GL +N EA+ +F +G +I N +I+ + K+ R + A ++F +
Sbjct: 689 YGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS 748
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ GL P+ TY +MI K+G + AN + ME++G+ P
Sbjct: 749 AS-GLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVP 789
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 160/341 (46%), Gaps = 59/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ VT+N +I G T GR+ EAA++F+K+ PN++ N+ + A +
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
F+ M + KPD+V+ ++ G +G+ D G+ D N++
Sbjct: 393 FDSMTAKGH---KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHA 449
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
+K G +++A + M Q+ V+P+ TY+T++ F+ ++G + +
Sbjct: 450 YAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPN 509
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
Y+ +I G+C + A L EM+++GI PD + + I
Sbjct: 510 TAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPR----------------PDIVFFNSVI 553
Query: 228 DGLYKNGFVLEAMKVF---SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ L K+G V++A +F + IG V+T + LIDG C +G++ A+ I M+
Sbjct: 554 NSLCKDGRVMDAHDIFDLVTDIGERPDVITFTS---LIDGYCLVGKMDKAFKILDA-MEV 609
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ D+VTY+ ++ G+ K G+ L +M+ G++PN
Sbjct: 610 VGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 152/352 (43%), Gaps = 49/352 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + ++ PN+V NS + LC GR EAA +F + P++++
Sbjct: 348 LGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVS 407
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MM 104
+ TL + F +M+ F + D +I K G M
Sbjct: 408 YCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQ 467
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
QG+ PDVVT + + S+ G++ +A M+ R + PNT Y++++ GF
Sbjct: 468 QQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLV 527
Query: 158 -------AWWSKGC-RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+KG R D+ +N +IN CKD V DA + + G R D T+ +L
Sbjct: 528 KAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSL 587
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
D + +D +K +L+AM+V +G ++T T L+DG K G
Sbjct: 588 I--------DGYCLVGKMDKAFK---ILDAMEV---VGVETDIVTYST---LLDGYFKNG 630
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
R+ +F MQ G+ P+ VTY IM+ G + G+ A +M E+G
Sbjct: 631 RINDGLTLFRE-MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/366 (22%), Positives = 162/366 (44%), Gaps = 56/366 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVI 59
MGR + +++ PN ++S+I+G C G +++A L ++ N P+++
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------M 104
FN++ + A ++F+ +V + G +PDV+T T++IDG C G M +
Sbjct: 548 FFNSVINSLCKDGRVMDAHDIFD-LVTDIGE--RPDVITFTSLIDGYCLVGKMDKAFKIL 604
Query: 105 DQ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--A 158
D G+ D+VT + + D K+G++ + L M ++ V PNT TY ++ G A
Sbjct: 605 DAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664
Query: 159 WWSKGCRHDVYS------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ R + Y I++ G C++ ++A+ L +++ + ++ T
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724
Query: 207 NTLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NT+ A+ V P+ Y I L K+G V +A +FS++
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEK 784
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V N +I L + G + A + + + + T ++M+ F ++G++
Sbjct: 785 SGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKV-DGKRILLEASTTSLMLSLFSRKGKYH 843
Query: 309 KANGLL 314
+ LL
Sbjct: 844 EDMKLL 849
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC +V+SY+I++ G C + + A+ L + M EG P+
Sbjct: 223 GCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEG---------------GACSPNVVA 267
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T I G +K G +A +F + + T N +ID LCK + A + +
Sbjct: 268 YNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMT 327
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G PD VTYN MIHG+ G+ ++A + M+ GL PN
Sbjct: 328 TN-GAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPN 369
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHD---------VYSYNILINGYCKDRNVEDAVS 189
+ R + + C + A +++ CR V++Y+IL++ C+ R + +
Sbjct: 119 LARATSSSACITDGPALALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRARRPDLGLV 178
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +L G++ T +TL + Y N + +
Sbjct: 179 LFGCILRTGLKIHQITASTLLKCL----------------CYANRTEEAVNVLLHRMSEL 222
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL-TPDVVTYNIMIHGFCKEGQHQ 308
CV + + + ++ GLC + A D+F M+ + G +P+VV YN +IHGF KEG+
Sbjct: 223 GCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETG 282
Query: 309 KANGLLLDMEETGLEPN 325
KA L +M G++P+
Sbjct: 283 KACSLFHEMTRQGVKPD 299
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 160/360 (44%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ VT+++LI C GR A RL ++ P + L + A
Sbjct: 222 CF-PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGA 280
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L LFEEM +++ C+PDV T T +I GL K G M +G RPD V +N M
Sbjct: 281 LGLFEEMRHQY---CRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNM 337
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++++A L E M P+ TYNT++ +W+ + G
Sbjct: 338 INFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSG 397
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------- 216
++Y+ILI+G+CK E A+ L EM +G Y +L A+
Sbjct: 398 ISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAH 457
Query: 217 -----------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ VY I L K G + +A+ +F + C + N L+ GL
Sbjct: 458 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G L A MQ G PD+ +YNI+++G K G +A +L +M+++ ++P+
Sbjct: 518 ARAGMLDEALTTMRR-MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPD 576
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 133/318 (41%), Gaps = 59/318 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +I+ L I +A +F ++ V C P +N++ ++ ++ L+ EM
Sbjct: 158 LSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMS 217
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
NE C PD VT + +I CK G M D GM+P ++ K
Sbjct: 218 NEGH--CFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLN 275
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ A L E M + CR DV++Y LI G K ++
Sbjct: 276 NVHGALGLFEEMRH---------------------QYCRPDVFTYTELIRGLGKAGRFDE 314
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A + EM EG R PD+ V I+ L K G + +A+K+F +
Sbjct: 315 AYNFFHEMRREGCR-----------------PDTVVINNMINFLGKAGRLDDAVKLFEEM 357
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
G +C+ ++ T N +I L + + M+ G++P TY+I+I GFCK +
Sbjct: 358 GTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNR 417
Query: 307 HQKANGLLLDMEETGLEP 324
+KA LL +M+E G P
Sbjct: 418 TEKAMMLLEEMDEKGFPP 435
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 68/263 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF- 79
P+ V N++I L GR+ +A +LF+++ C P+V+T+NT+ + AL + ++E
Sbjct: 329 PDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTI-IKALFESKSRISEIS 387
Query: 80 -------GVICKPDVVTCTNIIDGLCK----------------DGF------------MM 104
G P T + +IDG CK GF +
Sbjct: 388 SWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 447
Query: 105 DQGMRPDVV-----------------TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ R D+ VM +L K G++++A L + M + PN
Sbjct: 448 GKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNV 507
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
YN LM G A GC D+ SYNI++NG K A+ +
Sbjct: 508 YAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSN 567
Query: 194 MLSEGIRADATTYNTLFMAINNV 216
M I+ DA +YNT+ A+++
Sbjct: 568 MKQSAIKPDAVSYNTVLGAMSHA 590
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 43/233 (18%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF++L C + +
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYA 476
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A+NLF+EM N+ G C P+V ++ GL + G M
Sbjct: 477 VMIKHLGKAGRLDDAVNLFDEM-NKLG--CTPNVYAYNALMSGLARAGMLDEALTTMRRM 533
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G PD+ + N++ + L+K G A +L M Q + P+ +YNT++
Sbjct: 534 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAM------ 587
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
S+ L E+A L +EM G D TY+++ AI V
Sbjct: 588 ------SHAGLF---------EEAAKLMKEMNVLGFEYDLITYSSILEAIGKV 625
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
R+V N M F W +K HD +Y LI C + V + +M+ E
Sbjct: 90 REVMKTDVGVNVKMQFFRWAAKKRNYEHDTSTYMALIR--CLE--VVEQYGEMWKMIQEM 145
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+R M ++++ I L + +A+ +F I KC T +
Sbjct: 146 VRNPVCVVTP--MELSDI----------IRMLGNAKMISKAVAIFYQIKVRKCQPTAQAY 193
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L G+ + ++++ + PD VTY+ +I FCK G+ A LL +M+
Sbjct: 194 NSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMK 253
Query: 319 ETGLEP 324
+ G++P
Sbjct: 254 DNGMQP 259
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 165/366 (45%), Gaps = 52/366 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L +L PN+ T+N L++ LC GR+ EA + + C PN +T+NTL
Sbjct: 139 FLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198
Query: 68 ---ALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
L+ E +V+ E G KP++VT ++++GLCK G M+ +G+ PD
Sbjct: 199 RAGELDGAERVVSLMREEGN-AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPD 257
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------F 157
VV+ N + K G + E+ + M QR + P+ T+ +L+
Sbjct: 258 VVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVA 317
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
+G R + ++ LI+G+CK ++DA+ EM GI+ YN L
Sbjct: 318 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
M V PD Y+T I G K G + A ++ + + T +
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
LI GLC+ RL A ++F ++Q G+ PD TY +I G CKEG +KA L +M
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 496
Query: 320 TGLEPN 325
G+ P+
Sbjct: 497 KGVLPD 502
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 166/368 (45%), Gaps = 56/368 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVIT 60
GR ++G + + PN VT+N+L+ C G + A R+ + PN++T
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FN++ A +F+EMV E PDVV+ ++ G CK G
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREG---LAPDVVSYNTLLSGYCKVGCLHESLAVFS 282
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+ PDVVT + K G +E+A L+ M +R + N T+ L+DGF
Sbjct: 283 EMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G + V YN LINGYCK ++ A L REM ++ ++ D TY+
Sbjct: 343 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 402
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ M V PD+ Y++ I GL + + +A ++F +
Sbjct: 403 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T LIDG CK G ++ A + H M G+ PDVVTY+++I+G K + ++
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSL-HDEMIRKGVLPDVVTYSVLINGLSKSARTKE 521
Query: 310 ANGLLLDM 317
A+ LL +
Sbjct: 522 AHRLLFKL 529
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 169/391 (43%), Gaps = 72/391 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + ++ P++V++N+L+ G C G + E+ +F ++ P+V+TF
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+L A+ L +M E G+ + + VT T +IDG CK GF+ D
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQM-RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEE 353
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G++P VV N + + K G+M+ A L+ M + V P+ TY+T++ G+
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D +Y+ LI G C+++ + DA L ML G++ D TY T
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PD Y+ I+GL K+ EA ++ + +
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533
Query: 251 CV---------------LTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTY 294
V ++ L+ G C G +K A ++ ML +N L D Y
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL--DGSVY 591
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+IHG C+ G +KA M +G PN
Sbjct: 592 SILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G P V N + LS D + A L M++ V PN T
Sbjct: 113 GYAPSVPAYNAVLLALS-DASLPSARRFLSSMLRHGVAPNVYT----------------- 154
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
YNIL+ C +E+AV + +M G +A TYNTL A
Sbjct: 155 ----YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N P+ + + ++GL K G + A KVF + + + N L+ G CK
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G L + +F + Q GL PDVVT+ +IH CK G ++A L+ M E GL N
Sbjct: 271 VGCLHESLAVFSEMTQR-GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 119/278 (42%), Gaps = 85/278 (30%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L ++L P+ +T++SLI+GLC E K+LN C
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE----------KRLNDAC------- 453
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
LFE M+ + GV +PD T T +IDG CK+G M+ +G+ P
Sbjct: 454 ---------ELFENML-QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------D 155
DVVT +V+ + LSK + +EA+ LL + D P+ Y+ LM
Sbjct: 502 DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLK 561
Query: 156 GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
GF + + + D Y+ILI+G+C+ NV A+S ++ML G
Sbjct: 562 GFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGF-- 619
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
P+S + + GL++ G V+EA
Sbjct: 620 ---------------SPNSTSTISLVRGLFEEGMVVEA 642
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++L PN+VT+N L+ GLC GR+ E L ++ P+ T+
Sbjct: 243 GDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTY 302
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L + L+LF E + + GV+ TC+ +++GLCKDG
Sbjct: 303 SILFDGLTRTGESRTMLSLFAESLKK-GVMLG--AYTCSILLNGLCKDGKVAKAEQVLEM 359
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++ G+ P V N + + + + A C+ E M R + P+ TYN L++G
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G V ++N LI+ Y +E ++ +M +GI++D ++ +
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ A +V P++ VY + ID ++G +A + + N
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG 539
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+I T N L+ GLC+ ++ A ++ + L +N GL PDVV+YN +I C +G KA
Sbjct: 540 VSASIVTYNLLLKGLCRSSQIDEAEELIYTL-RNQGLRPDVVSYNTIISACCNKGDTDKA 598
Query: 311 NGLLLDMEETGLEP 324
LL +M + G+ P
Sbjct: 599 LELLQEMNKYGIRP 612
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 162/378 (42%), Gaps = 57/378 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
+GR + G ++ + P+ +N +++ G + A + +++ + P+
Sbjct: 135 VGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDA 194
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
++N + AL +F+EMV + GV+ P+ +T +IDG K G
Sbjct: 195 FSYNVVIAGLWRSGKGSDALKVFDEMV-DMGVV--PNWITYNTMIDGHVKGGDLEAGFRL 251
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M+ G +P++VT NV+ L + G+M+E L++ M + P+ TY+ L DG
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311
Query: 160 --------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG Y+ +IL+NG CKD V A + ++ G+
Sbjct: 312 TGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVI 371
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YNTL M ++ PD Y I+GL K V +A + +
Sbjct: 372 YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
++ET N LID G+L+ + + MQ G+ DV+++ ++ FCK G+
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD-MQQKGIKSDVISFGSVVKAFCKNGKI 490
Query: 308 QKANGLLLDMEETGLEPN 325
+A +L DM + PN
Sbjct: 491 PEAVAILDDMIYKDVAPN 508
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 143/331 (43%), Gaps = 51/331 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G F + ++ P+ +T+N+LI GLC + +A L ++ DP+V TFNTL
Sbjct: 387 GAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL- 445
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
++ +G + + C ++ M +G++ DV++ + K+
Sbjct: 446 ----------IDAYGTAGQ--LEKCFTVLSD------MQQKGIKSDVISFGSVVKAFCKN 487
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK+ EA +L+ MI +DV PN YN+++D + + G + +Y
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 547
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N+L+ G C+ +++A L + ++G+R D +YNT+ A N
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN---------------- 591
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +A+++ + + T+ T + L+ L GR+ + + M + + P
Sbjct: 592 -KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVH-DMECLYQQMLHKNVEPSS 649
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
Y IM+ + + K L +M E G+
Sbjct: 650 SIYGIMVDAYVRCENDSKVASLKKEMSEKGI 680
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
F +L + ++++F S++K C G+I EA + + PN +N++
Sbjct: 459 FTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
A L E+M N GV +VT ++ GLC+ + +QG+
Sbjct: 519 YIESGDTEQAFLLVEKMKNS-GV--SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD- 167
RPDVV+ N + G ++A LL+ M + + P TY+TL+ A S G HD
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALA--SAGRVHDM 633
Query: 168 --VYS-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+Y Y I+++ Y + N SL +EM +GI D T
Sbjct: 634 ECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFDDT 685
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 158/343 (46%), Gaps = 56/343 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P++VT+ S++ GLC +G++ A + +++ + +P+ TF+ L AL
Sbjct: 77 MAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEAL 136
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GFMMDQGM--------RPDVVTLN 116
L++E++ C+ D V+ + +I GLC++ + + Q M +PDVVT
Sbjct: 137 KLYKEILTSS---CRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYT 193
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+ D K G +E+A +L VM R PN TY++L+ G SK
Sbjct: 194 ALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK 253
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC +V +Y LI+G C V+ A L EM + AD +YN L
Sbjct: 254 GCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNAL------------- 300
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+DG + G + EA ++F + C+ T CL+ G C RL+ A + +
Sbjct: 301 ----LDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 356
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDVVTY+I++ G+ + + +A + +M + PN
Sbjct: 357 TAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 399
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 157/358 (43%), Gaps = 59/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ TF++LI G C ++ EA +L+K++ C + ++ + L A L
Sbjct: 114 PDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYEL 173
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTD 120
F+EM KPDVVT T +IDG CK G +++ M+ P+VVT + +
Sbjct: 174 FQEMEMREDGAWKPDVVTYTALIDGFCKSG-NLEKAMKMLGVMEGRKCVPNVVTYSSLLH 232
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRH 166
L K G +++A L M + PN TY TL+ G K C
Sbjct: 233 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPA 292
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
D SYN L++GYC+ +E+A L +EM ++ D TY L N
Sbjct: 293 DTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLL 352
Query: 216 --------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ PD Y+ + G + +EA + + T + LIDGLCK
Sbjct: 353 ENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCK 412
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++ + + PDVVTY I+I G C + ++A LL +M +EP+
Sbjct: 413 AGRVNHAMEVLKNVDK-----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPS 465
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 162/367 (44%), Gaps = 57/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF---CCDPNVITFNTL-- 64
L IL S + V+ ++LI GLC E RI EA LF+++ + P+V+T+ L
Sbjct: 138 LYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALID 197
Query: 65 ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
E+ + GV+ C P+VVT ++++ GLCK G M +G P
Sbjct: 198 GFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVP 257
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+VVT + L K++ A L++ M +T +YN L+DG+
Sbjct: 258 NVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLF 317
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLF----- 210
+K C D +Y L+ G+C +E+A L M + GI D TY+ +
Sbjct: 318 KEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSR 377
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M NV P++ Y++ IDGL K G V AM+V + V T
Sbjct: 378 AKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVV----T 433
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+I+GLC R + A + M N + P V T+N +I C+ G +A LL+ M
Sbjct: 434 YTIVIEGLCGTDRTEEALTLLEE-MVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 492
Query: 318 EETGLEP 324
GLEP
Sbjct: 493 AAHGLEP 499
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 160/351 (45%), Gaps = 56/351 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L R+ PN+VT+ +LI GLC ++ A L ++ CC + +++N L
Sbjct: 246 LFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYC 305
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC------KDGFMMD-----QGMR 109
A LF+EM + C PD +T T ++ G C + F+++ G+
Sbjct: 306 RLGRIEEAKQLFKEMAAKS---CLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC----- 164
PDVVT +++ S+ + EA ++ MI R+V PN TY++L+DG +
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422
Query: 165 -----RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+ DV +Y I+I G C E+A++L EM+++ + T+N++
Sbjct: 423 LKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSV---------- 472
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I L + G + EA K+ A+ H + T L++G + GR++IA+++F
Sbjct: 473 -------IGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFE 525
Query: 280 MLMQNPGLTPDVV------TYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ + + ++ +I G CK + KA ++ ++ EP
Sbjct: 526 VMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEP 576
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 48/283 (16%)
Query: 85 PDVVTCTNIIDGLCK-----DGFMMDQGMR------PDVVTLNVMTDNLSKDGKMEEANC 133
P+ T +++GLCK + + + MR PD+VT + + + K G+M+ A
Sbjct: 7 PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66
Query: 134 LLEVMIQRD-VNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+L M+ RD + P+ TY +++DG KG D ++++ LI G+
Sbjct: 67 ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------------NNVP 217
C R V++A+ L +E+L+ R DA + + L +
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD YT IDG K+G + +AMK+ + KCV + T + L+ GLCK G L A D+
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 246
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
F M + G P+VVTY +IHG C + A L+ +M T
Sbjct: 247 FRR-MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTAT 288
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 57/319 (17%)
Query: 7 GFVLLGRI-----------LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-C 54
G+ LGRI SC P+ +T+ L++G C R+ EA L + +
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCL-PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGI 361
Query: 55 DPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
DP+V+T++ + + A +EM+ P+ VT +++IDGLCK G ++
Sbjct: 362 DPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN---VAPNAVTYSSLIDGLCKAG-RVN 417
Query: 106 QGM-------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF- 157
M +PDVVT ++ + L + EEA LLE M+ + V P+ T+N+++
Sbjct: 418 HAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALC 477
Query: 158 -------AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
AW + G + +Y L+ G+ + +E A L M + ++ +
Sbjct: 478 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSS- 536
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
A N VP ++ I GL K + +AM V + + +C E C ++DG
Sbjct: 537 -------AANLVP--EQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDG 587
Query: 265 LCKIGRLKIAWDIFHMLMQ 283
L + GR + A + + + +
Sbjct: 588 LLRAGRTEEAGKLINSISK 606
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 36/219 (16%)
Query: 143 VNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNILINGYCKDRNVEDA 187
V PN TYN +++G K D+ +Y+ +ING+CK ++ A
Sbjct: 5 VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64
Query: 188 VSLCREMLS-EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
+ REM++ +G+ D TY ++ M + V PD ++ I
Sbjct: 65 CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGL 287
G V EA+K++ I C L + + LI GLC+ R+ A+++F M M+ G
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184
Query: 288 -TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVVTY +I GFCK G +KA +L ME PN
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 223
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 163/358 (45%), Gaps = 54/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +VL + ++ TFN +I LC EG++ +A + PNV+T
Sbjct: 194 LNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVT 253
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NT+ A +F+ M ++ G+ +PD T + I GLCK+G
Sbjct: 254 YNTIIHGHCLRGKFQRARVIFQTMKDK-GL--EPDCYTYNSFISGLCKEGRLEEASGLIC 310
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M++ G+ P+ VT N + D G +++A + MI + + + TYN +
Sbjct: 311 KMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEG 370
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG D ++NILINGYC+ + + A L EM+ +GI+ TY
Sbjct: 371 RMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYT 430
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+L Y+ G K + EA +FS I + I N LIDG C
Sbjct: 431 SLI---------------YVLG--KRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCA 473
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A+ + M N + PD +TYN ++ G+C+EG+ ++A LL +M+ G++P+
Sbjct: 474 NGNIDRAFQLLKE-MDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPD 530
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 106/239 (44%), Gaps = 53/239 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A F LL ++ P +VT+ SLI L R+ EA LF K+ P++I F
Sbjct: 405 GDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVF 464
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR-----PD 111
N L IDG C +G F + + M PD
Sbjct: 465 NAL-----------------------------IDGHCANGNIDRAFQLLKEMDNMKVLPD 495
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------- 158
+T N + ++GK+EEA LL+ M +R + P+ +YNTL+ G++
Sbjct: 496 EITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 555
Query: 159 -WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ G + +YN LI G CK++ E A L +EM+S+GI D +TY ++ A+ V
Sbjct: 556 EMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETV 614
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 77/304 (25%)
Query: 71 LFEEMVNEFGVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDV----------------- 112
+F+ +V + + KP + + C +I ++G P++
Sbjct: 148 IFDLLVRAYCELKKPNEALECFYLIK---------EKGFVPNIETCNQMLSLFLKLNRTQ 198
Query: 113 ------------------VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
T N+M + L K+GK+++A + M V PN TYNT++
Sbjct: 199 MAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTII 258
Query: 155 DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
G KG D Y+YN I+G CK+ +E+A L +ML G+
Sbjct: 259 HGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLV 318
Query: 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+A TYN L IDG G + +A + + + ++ T N
Sbjct: 319 PNAVTYNAL-----------------IDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNL 361
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
I L GR+ A ++ M+ G+ PD VT+NI+I+G+C+ G ++A GLL +M
Sbjct: 362 FIHALFMEGRMGDADNMIKE-MREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGK 420
Query: 321 GLEP 324
G++P
Sbjct: 421 GIQP 424
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS---YNILINGYCKDRNVEDA------- 187
+IQR + TCT T+ D A R D + +++L+ YC+ + +A
Sbjct: 115 LIQRLILSPTCTNRTIFDELALARD--RVDAKTTLIFDLLVRAYCELKKPNEALECFYLI 172
Query: 188 --------VSLCREMLSEGIRADATT-----YNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+ C +MLS ++ + T Y +F N+ + + I+ L K G
Sbjct: 173 KEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRM--NIRSSLYTFNIMINVLCKEG 230
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A + + + T N +I G C G+ + A IF M++ GL PD TY
Sbjct: 231 KLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQT-MKDKGLEPDCYTY 289
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N I G CKEG+ ++A+GL+ M E GL PN
Sbjct: 290 NSFISGLCKEGRLEEASGLICKMLEGGLVPN 320
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 160/368 (43%), Gaps = 74/368 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L +L +P +T+N+LI+G C GR+ EA+ +F
Sbjct: 261 GELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIF--------------- 305
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
E + E GV +P+V T T +IDGLC G M+ + P+
Sbjct: 306 ------------EFMMERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN 351
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------- 160
VVT N++ + L KD + +A ++E+M +R P+ TYN+L+ G
Sbjct: 352 VVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLY 411
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
S DV S+N LI+G CK + A+ + ++ + D T N L
Sbjct: 412 LMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLK 471
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
++ + + P+S YTT IDG K G + A + + + ++
Sbjct: 472 SGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFD 531
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
NCL+ LCK G L AW +F MQ PDV+++NIMI G K G + A LL+ M
Sbjct: 532 YNCLLSSLCKKGTLDQAWRLFEE-MQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGM 590
Query: 318 EETGLEPN 325
GL P+
Sbjct: 591 SHAGLSPD 598
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 141/343 (41%), Gaps = 70/343 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L +L F N+ +N L+KGLC +A L +++ P+V+++NT+
Sbjct: 129 VLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFC 188
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
AL L EM G C +VT +ID CK G
Sbjct: 189 EGKELEKALQLANEMQ---GSGCSWSLVTWGILIDAFCKAG------------------- 226
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
KM+EA LL+ M + + + Y +L+ GF +G
Sbjct: 227 ------KMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSP 280
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------------- 209
+YN LI G+CK +++A + M+ G+R + TY L
Sbjct: 281 CAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLL 340
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + P+ Y I+ L K+ V +A+++ + + T N L+ GLC
Sbjct: 341 NLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAK 400
Query: 269 GRLKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKA 310
G L A + ++++++ T PDV+++N +IHG CK + +A
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQA 443
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 87/358 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL +L PN+VT+N +I LC + + +A + + + P+ IT
Sbjct: 330 VGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNIT 389
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK------PDVVTCTNIIDGLCKDGFMMDQGM---- 108
+N+L L A +E ++ K PDV++ +I GLCK G + Q +
Sbjct: 390 YNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCK-GNRLHQALDIYD 448
Query: 109 -------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW- 160
D+VT N++ ++ K G + +A L + + + PN+ TY T++DGF
Sbjct: 449 LLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTG 508
Query: 161 ----SKG--CRH-------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KG C+ V+ YN L++ CK ++ A L EM + D ++N
Sbjct: 509 MLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFN 568
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ IDG K G I++ L+ G+
Sbjct: 569 IM-----------------IDGSLKAG-------------------DIKSAESLLVGMSH 592
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L+PD+ TY+ +I+ F K G +A M ++G EP+
Sbjct: 593 AG-----------------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPD 633
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 89/220 (40%), Gaps = 60/220 (27%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
+G +VY+YNIL+ G C++ AVSL REM + D +YNT+
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195
Query: 211 ------------------------------------------MAINNVPPDSHVYTTYID 228
M + D VYT+ I
Sbjct: 196 ALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIR 255
Query: 229 GLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
G G + +F + G+ C +T N LI G CK+GRLK A +IF +M+
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITY---NTLIRGFCKLGRLKEASEIFEFMMER- 311
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P+V TY +I G C G+ ++A LL M + EPN
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPN 351
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 78/237 (32%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++++FN+LI GLC R+ +A ++ L +++T N L A+ L
Sbjct: 422 PDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMEL 481
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------------------------- 103
++++ N V P+ T T +IDG CK G +
Sbjct: 482 WKQISNSKIV---PNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSS 538
Query: 104 ------MDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+DQ R PDV++ N+M D K G ++ A LL M ++P
Sbjct: 539 LCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSP- 597
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
D+++Y+ LIN + K +++A+S +M+ G DA
Sbjct: 598 --------------------DLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDA 634
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++ +S P++ +N L+ LC +G + +A RLF+++ P+VI+FN + +L
Sbjct: 516 LLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSL 575
Query: 70 NLFEEMVNEFGVI------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+ E ++ PD+ T + +I+ K G+ M+D G PD
Sbjct: 576 KAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAH 635
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+ + G+ ++ ++ ++ +DV + T+MD
Sbjct: 636 ICDSVLKYCISQGETDKLTEFVKKLVDKDVVLDKELTCTVMD 677
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 157/362 (43%), Gaps = 62/362 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF +LG++ +PN+V + +LI G C G I +LF K+ N T
Sbjct: 177 VGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYT 236
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----PDVVTL 115
+ L +N F +M GL KDG + + M+ P+V T
Sbjct: 237 YTVL----INGFFKM--------------------GLKKDGIELYEKMKLTGIVPNVYTY 272
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N M DGK+ A L + M +R V N TYNTL+ G +
Sbjct: 273 NSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKR 332
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
G ++ SYN LI+GYC N++ A SL +M S G TYN L
Sbjct: 333 DGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAG 392
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P YT +D L ++ + +A +++S++ V I LI
Sbjct: 393 VTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIH 452
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLC +G +K A +F L L P+ V YN MI+G+CKEG +A LL +M E G+
Sbjct: 453 GLCVVGDMKEASKLFKSL-DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMV 511
Query: 324 PN 325
PN
Sbjct: 512 PN 513
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 131/307 (42%), Gaps = 63/307 (20%)
Query: 56 PNVITFNTLA--LVALNLFEE---MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP 110
P TFN L L+ N FE+ + NE K DV + +I G C+ G++ D+G
Sbjct: 128 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMIKGCCEVGYL-DKGF-- 184
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW 160
+V+ G+MEE ++PN Y TL+D G +
Sbjct: 185 EVL------------GQMEEMG----------LSPNVVVYTTLIDGCCKNGDIERGKQLF 222
Query: 161 SKGCRHDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
K DV Y+Y +LING+ K +D + L +M GI + TYN++
Sbjct: 223 YKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCND 282
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V + Y T I GL + VLEA ++ + + +
Sbjct: 283 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 342
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG C IG L A +F+ M++ G +P + TYNI+I GF + ++ +ME
Sbjct: 343 NTLIDGYCSIGNLDKASSLFNQ-MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREME 401
Query: 319 ETGLEPN 325
GL P+
Sbjct: 402 ARGLSPS 408
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 108/276 (39%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + F L + N+VT+N+LI GLC E R+LEA RL ++ PN+I++
Sbjct: 283 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 342
Query: 62 NTL---------------------------ALVALNL----FEEMVNEFGVI-------- 82
NTL +L N+ F E N GV
Sbjct: 343 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 402
Query: 83 --CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P VT T ++D L + M G+ D+ V+ L G M+E
Sbjct: 403 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKE 462
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------DVYSYNILIN 176
A+ L + + + + PN YNT++ G+ R +V SYN I
Sbjct: 463 ASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQ 522
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
CKD +A L ++M+ G++ + +N + A
Sbjct: 523 ILCKDEKWTEAEVLLKDMIELGLKPSISIWNMISKA 558
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLM-----DGF---AWW----SKG-CRHDVYSYNILI 175
E+A MI R + P + T+N L+ F AW +KG + DVYS+ I+I
Sbjct: 112 EQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKGNVKLDVYSFGIMI 171
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
G C+ ++ + +M G+ + Y TL M +V
Sbjct: 172 KGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVV 231
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+ + YT I+G +K G + ++++ + V + T N +I C G+L A+++
Sbjct: 232 ANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFEL 291
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M+ G+ +VVTYN +I G C+E + +A L+ M+ GL PN
Sbjct: 292 FDE-MRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPN 338
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-----NNV 216
+G +H S + +++ + SL +++S I + + T ++LF + ++
Sbjct: 32 QGFQHTHQSISFILHLLISSNLFSHSQSLLLKLISGQISSSSFTPSSLFHELTQPHLDSF 91
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P ++ I+ ++ +A+ F+ + V T N L+ L K + AW
Sbjct: 92 PTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWR 151
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F+ N L DV ++ IMI G C+ G K +L MEE GL PN
Sbjct: 152 VFNETKGNVKL--DVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPN 198
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 157/339 (46%), Gaps = 62/339 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
N V++ +LI GLC GR+ E +FKK+ C P V T+ + + A+NLF
Sbjct: 38 NEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLF 97
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
EM E G C+P++ T T +I+ +CK+ M+++G+ P V T N + D
Sbjct: 98 SEM-RERG--CEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGY 154
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K+G +E A +L++M NPN TYN LI G+C+ +
Sbjct: 155 CKEGMVEAAQEILDLMHSNSCNPNERTYNE---------------------LICGFCRKK 193
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYT 224
NV A++L +ML + TYN+L M N V PD Y+
Sbjct: 194 NVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYS 253
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ID L K G + EA +F+++ LIDG CK G++ A + ++
Sbjct: 254 VFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTE 313
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
L P+ TYN +I G CKE + Q+A L+ M + GL+
Sbjct: 314 DCL-PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLK 351
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 155/360 (43%), Gaps = 55/360 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G +L ++ P++ T+N+LI G C EG + A + ++ C+PN T+N L
Sbjct: 128 GRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
A+ L +M+ P VVT ++I G CK G+ M + G
Sbjct: 188 GFCRKKNVHRAMALLSKMLESR---LTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENG 244
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ PD T +V D L K G++EEAN L + ++ + N Y L+DG+ K
Sbjct: 245 VVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDAN 304
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
C + +YN LI+G CK+R V++A+ L M+ +G++ TY L +A+
Sbjct: 305 SLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAM 364
Query: 214 ------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+ PD ++YT +I G + EA + S + +
Sbjct: 365 LKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDA 424
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T +ID +G L A+D+ M + G P TY+ +I KE +K + L
Sbjct: 425 LTYTLVIDAYGGLGLLNPAFDVLKR-MFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVAL 483
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 161/397 (40%), Gaps = 82/397 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
LL ++L S TP++VT+NSLI G C G + A RL +N P+ T++
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGM 108
+ N+ + E G+ K + V T +IDG CK G M D +
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGI--KANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDC 315
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
P+ T N + D L K+ K++EA L+E MIQ+ + TY L+
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375
Query: 158 ---AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
S G + DVY Y I+ +C N+++A + M G+ DA TY + A
Sbjct: 376 ILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYG 435
Query: 215 NV------------------PPDSHVYTTYIDGL--------YKNGFVLE---------- 238
+ P H Y+ I L YKN + +
Sbjct: 436 GLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADV 495
Query: 239 -----------AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
A+++F + H C I T LI GLCK+GRL +A +F M G+
Sbjct: 496 ADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDH-MNERGV 554
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+P YN +++ C+ G + A L+ M E G P
Sbjct: 555 SPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLP 591
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L+E + DVN +N + KGCR + SY LI+G C+ V++ +++ ++
Sbjct: 11 LVEANLNNDVNSAFSVFNMM------PKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKK 64
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M R D + P YT + L+++G +EA+ +FS + C
Sbjct: 65 M-----RED------------DCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEP 107
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T +I+ +CK +L+ I +++ GL P V TYN +I G+CKEG + A +
Sbjct: 108 NIHTYTVMINAMCKETKLEEGRRILDEMVEK-GLVPSVPTYNALIDGYCKEGMVEAAQEI 166
Query: 314 LLDMEETGLEPN 325
L M PN
Sbjct: 167 LDLMHSNSCNPN 178
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L ++L +PN+ T+ LI GLC GR+ A +LF +N P+ +N+L
Sbjct: 510 LFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSL----- 564
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
C+ + D + G MM+ G P + +LNV+ L ++G E
Sbjct: 565 ---------LNCCCELGIYG-----DAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKE 610
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
+A + ++Q N + + L+DG ++GC+ +Y +LI
Sbjct: 611 KAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLI 670
Query: 176 NG 177
G
Sbjct: 671 EG 672
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 114/289 (39%), Gaps = 76/289 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD--PNV 58
+G + F +L R+ + P+ T++ LIK L E E + +K NV CD PNV
Sbjct: 437 LGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKE----ELTKKYK--NVALCDSIPNV 490
Query: 59 ITFNTLALV--------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP 110
F +A V AL LFE+M+ E G C P++ T +I GLCK G
Sbjct: 491 F-FADVADVWKMMKFETALELFEKML-EHG--CSPNINTYAKLIIGLCKVG--------- 537
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----GF-------- 157
++ A L + M +R V+P+ YN+L++ G
Sbjct: 538 ----------------RLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLV 581
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
A G + S N+L G ++ + E A + +L G D + L
Sbjct: 582 GAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKIL------- 634
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
IDGL KNG ++ + C + +T LI+GL
Sbjct: 635 ----------IDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 168/354 (47%), Gaps = 64/354 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L R+ F P++VT+N +I C+ G++ A +F++L C+P VIT+ L
Sbjct: 160 VLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATI 219
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMR 109
VA+ L +EM+++ G+ +PD +T II G+CK+ M+D+ G +
Sbjct: 220 LDGGIDVAMKLLDEMLSK-GL--EPDTLTYNAIIRGMCKE-MMVDKAFELLRSLSSRGCK 275
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PD++T N++ L GK E L+ MI S GC+ +V
Sbjct: 276 PDIITYNILLRTLLSRGKWSEGEKLISEMI---------------------SIGCKPNVV 314
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FM 211
+++ILI C+D VE+AV+L R M +G++ DA Y+ L +M
Sbjct: 315 THSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYM 374
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD Y T + GL + G +A++VF + C + + N L L G
Sbjct: 375 ISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDR 434
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ L+ N G+ PD +TYN +I C++G +A LL+DM+ PN
Sbjct: 435 YRALEMILKLL-NQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPN 487
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 48/331 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL +L P+ +T+N++I+G+C E + +A L + L+ C P++IT+N L L
Sbjct: 230 LLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLL 289
Query: 70 NL-----FEEMVNE-FGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
+ E++++E + CKP+VVT + +I LC+DG M ++G++PD
Sbjct: 290 SRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAY 349
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+ + ++G+++ A LE MI P+ YNT+M G K
Sbjct: 350 CYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKL 409
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
GC +V SYN L + + A+ + ++L++GI D TYN+L
Sbjct: 410 DEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSL---------- 459
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I L ++G V EA+++ + + + + + N ++ GLCK+ R A ++
Sbjct: 460 -------ISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLA 512
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
M G P+ TY ++I G G +A
Sbjct: 513 A-MTEKGCQPNETTYILLIEGIGFSGLRAEA 542
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 118/282 (41%), Gaps = 42/282 (14%)
Query: 85 PDVVTCTNIIDGL---------CKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
PDV+ CT +I G + ++++ +PDV N + K ++E AN +L
Sbjct: 102 PDVILCTKLIKGFFNSRNIGKATRVMEILERYGKPDVFAYNALISGFIKANQLENANRVL 161
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
+ M R P+ TYN ++ F K C V +Y ILI D
Sbjct: 162 DRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILD 221
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
++ A+ L EMLS+G+ D TYN + ++ PD Y
Sbjct: 222 GGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITY 281
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ L G E K+ S + + C + T + LI LC+ G+++ A ++ M+
Sbjct: 282 NILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS-MK 340
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD Y+ +I GFC+EG+ A L M G P+
Sbjct: 341 EKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPD 382
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 34/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G PDV+ + + +A ++E++ +R P+ YN L+ GF
Sbjct: 95 MVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEIL-ERYGKPDVFAYNALISGFIKANQ 153
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G DV +YNI+I +C ++ A+ + E+L + TY
Sbjct: 154 LENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTI 213
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A + PD+ Y I G+ K V +A ++ ++ +
Sbjct: 214 LIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRG 273
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C I T N L+ L G+ + ++ + G P+VVT++I+I C++G+ ++A
Sbjct: 274 CKPDIITYNILLRTLLSRGKWSEGEKLISEMI-SIGCKPNVVTHSILIGTLCRDGKVEEA 332
Query: 311 NGLLLDMEETGLEPN 325
LL M+E GL+P+
Sbjct: 333 VNLLRSMKEKGLKPD 347
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 163/370 (44%), Gaps = 60/370 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L PN+ T+N L++ LC GR+ EA + + C PN +T+NTL
Sbjct: 139 FLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFC 198
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
A ++L E N KP++VT ++++GLCK G M+ +G
Sbjct: 199 RAGELDGAERVVSLMREEGN-----AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG 253
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------- 156
+ PDVV+ N + K G + E+ + M QR + P+ T+ +L+
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313
Query: 157 ---FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+G R + ++ LI+G+CK ++DA+ EM GI+ YN L
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M V PD Y+T I G K G + A ++ + +
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI GLC+ RL A ++F ++Q G+ PD TY +I G CKEG +KA L
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEKALSLHD 492
Query: 316 DMEETGLEPN 325
+M G+ P+
Sbjct: 493 EMIRKGVLPD 502
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 168/368 (45%), Gaps = 56/368 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVIT 60
GR ++G + + PN VT+N+L+ C G + A R+ + PN++T
Sbjct: 166 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FN++ A +F+EMV E G+ PDVV+ ++ G CK G
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVRE-GL--APDVVSYNTLLSGYCKVGCLHESLAVFS 282
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+ PDVVT + K G +E+A L+ M +R + N T+ L+DGF
Sbjct: 283 EMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 342
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G + V YN LINGYCK ++ A L REM ++ ++ D TY+
Sbjct: 343 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 402
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ M V PD+ Y++ I GL + + +A ++F +
Sbjct: 403 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 462
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T LIDG CK G ++ A + H M G+ PDVVTY+++I+G K + ++
Sbjct: 463 GVQPDEFTYTTLIDGHCKEGNVEKALSL-HDEMIRKGVLPDVVTYSVLINGLSKSARTKE 521
Query: 310 ANGLLLDM 317
A+ LL +
Sbjct: 522 AHRLLFKL 529
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 169/391 (43%), Gaps = 72/391 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + ++ P++V++N+L+ G C G + E+ +F ++ P+V+TF
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 296
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+L A+ L +M E G+ + + VT T +IDG CK GF+ D
Sbjct: 297 TSLIHATCKAGNLEQAVALVAQM-RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEE 353
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G++P VV N + + K G+M+ A L+ M + V P+ TY+T++ G+
Sbjct: 354 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D +Y+ LI G C+++ + DA L ML G++ D TY T
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PD Y+ I+GL K+ EA ++ + +
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533
Query: 251 CV---------------LTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTY 294
V ++ L+ G C G +K A ++ ML +N L D Y
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL--DGSVY 591
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+IHG C+ G +KA M +G PN
Sbjct: 592 SILIHGHCRGGNVRKALSFHKQMLRSGFSPN 622
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 98/238 (41%), Gaps = 42/238 (17%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G P V N + LS D + A L M++ V PN T
Sbjct: 113 GYAPSVPAYNAVLLALS-DASLPSARRFLSSMLRHGVAPNVYT----------------- 154
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
YNIL+ C +E+AV + +M G +A TYNTL A
Sbjct: 155 ----YNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N P+ + + ++GL K G + A KVF + + + N L+ G CK
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G L + +F + Q GL PDVVT+ +IH CK G ++A L+ M E GL N
Sbjct: 271 VGCLHESLAVFSEMTQR-GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 121/278 (43%), Gaps = 85/278 (30%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L ++L P+ +T++SLI+GLC E K+LN C
Sbjct: 411 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE----------KRLNDAC------- 453
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
LFE M+ + GV +PD T T +IDG CK+G M+ +G+ P
Sbjct: 454 ---------ELFENML-QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 501
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------D 155
DVVT +V+ + LSK + +EA+ LL + D P+ Y+ LM
Sbjct: 502 DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLK 561
Query: 156 GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
GF + + + D Y+ILI+G+C+ NV A+S ++ML G
Sbjct: 562 GFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSP 621
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
++T+ +L + GL++ G V+EA
Sbjct: 622 NSTSTISL-----------------VRGLFEEGMVVEA 642
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 177/374 (47%), Gaps = 53/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A+ F +L ++ + PN + +++LI+GLC G++ A++L ++ P+ T+
Sbjct: 364 GKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTY 423
Query: 62 NTLALVALNLFE-----EMVNEF---GVICKPDVVTCTNIIDGLCKDGF----------M 103
+ L ++ E++NE G++ P+ T +I+GLC++G M
Sbjct: 424 HPLMQGHFQHYDKDGAFELLNEMRNSGIL--PNAYTYGIMINGLCQNGESKEAGNLLEEM 481
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---- 159
+ +G++P+ + SK+G + A LE M + +V P+ YN+L+ G +
Sbjct: 482 ISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRI 541
Query: 160 ----------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+G D ++Y+ LI+GYCK RN+E A L ++ML+ G++ +A TY L
Sbjct: 542 EEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDL 601
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD+H+Y I L ++ + A V + + +
Sbjct: 602 LEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGL 661
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
V + + LI GLCK+ ++ A + M GL P +V YN +I GFC+ G +A
Sbjct: 662 VPDLHIYSSLISGLCKMADMEKAVGLLDE-MAKEGLEPGIVCYNALIDGFCRSGDISRAR 720
Query: 312 GLLLDMEETGLEPN 325
+ + GL PN
Sbjct: 721 NVFDSILAKGLLPN 734
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 158/337 (46%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
N VT+N +I GLC G + EA +++ + P+ T+ L A L
Sbjct: 279 NEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALL 338
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+EM KP+VV ++DG K+G M+ G++P+ + + + L
Sbjct: 339 DEMSCSG---LKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGL 395
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSK-------------GCRHDV 168
K G++ A+ LL MI+ P+T TY+ LM G F + K G +
Sbjct: 396 CKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNA 455
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y+Y I+ING C++ ++A +L EM+SEG++ P++ +Y I
Sbjct: 456 YTYGIMINGLCQNGESKEAGNLLEEMISEGLK-----------------PNAFMYAPLII 498
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G K G + A + + + + N LI GL +GR++ A + ++ +Q GL
Sbjct: 499 GHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE-YYAQVQKRGLV 557
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TY+ +IHG+CK +KA+ LL M +GL+PN
Sbjct: 558 PDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPN 594
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/403 (23%), Positives = 156/403 (38%), Gaps = 85/403 (21%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDPNV 58
G F LL + S PN T+ +I GLC G EA L +++ N F P +
Sbjct: 438 GAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 497
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGM 108
I + ++L E + N PD+ ++I GL G + + +G+
Sbjct: 498 IGHSKEGHISLAC-ESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGL 556
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
PD T + + K +E+A+ LL+ M+ + PN TY L++G+
Sbjct: 557 VPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSS 616
Query: 158 ---AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+ G + D + Y I+I + N+E A + E+ G+ D Y++L
Sbjct: 617 ILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC 676
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
MA + P Y IDG ++G + A VF +I +
Sbjct: 677 KMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCV 736
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM------------------- 297
T LIDG CK G + A+D++ ++ G+ PD YN++
Sbjct: 737 TYTALIDGNCKNGDITDAFDLYKDMLDR-GIAPDAFVYNVLATGCSDAADLEQALFLTEE 795
Query: 298 ---------------IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GFCK G+ Q+ LL M + + PN
Sbjct: 796 MFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPN 838
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 148/367 (40%), Gaps = 90/367 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ +NSLIKGL T GRI EA + ++ P+ T++ L A L
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
++M+N KP+ T T++++G K M+ G +PD ++ N
Sbjct: 583 LQQMLNSG---LKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRN 639
Query: 122 LSKD-----------------------------------GKMEEANCLLEVMIQRDVNPN 146
LS+ ME+A LL+ M + + P
Sbjct: 640 LSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPG 699
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
YN L+DGF + +KG + +Y LI+G CK+ ++ DA L +
Sbjct: 700 IVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYK 759
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ML GI DA YN L ++ D + ++ G+ + +FS
Sbjct: 760 DMLDRGIAPDAFVYNVLATGCSDA-ADLEQALFLTEEMFNRGYA--HVSLFST------- 809
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
L+ G CK GRL+ + H++M + P+ T +I F K G+ +A+
Sbjct: 810 --------LVRGFCKRGRLQETEKLLHVMMDRE-IVPNAQTVENVITEFGKAGKLCEAHR 860
Query: 313 LLLDMEE 319
+ ++++
Sbjct: 861 VFAELQQ 867
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V +D KNG V A +V +G+ T CN L+ L + +++ W +
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKL-KGF 235
Query: 282 MQNPGLTPDV-----------------------------------VTYNIMIHGFCKEGQ 306
M+ G+ PDV VTYN+MI G C+ G
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGA 295
Query: 307 HQKANGLLLDMEETGLEPN 325
++A G +M + GL P+
Sbjct: 296 VEEAFGFKEEMVDYGLSPD 314
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 46/349 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+N L+K LC R+ A +L +++ C+P+V+++ T+ ++ L EE E
Sbjct: 182 PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEE-ARE 240
Query: 79 FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ +P+V +I+G C++ G M+++G+ P+V+T + + +LS G +
Sbjct: 241 LSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNV 300
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----------WSK----GCRHDVYSYNIL 174
E A + M R +PN T+ +LM G+ W++ G +V +YN L
Sbjct: 301 ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTL 360
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+G C + +AVS+ +M G + +TY L M N
Sbjct: 361 IHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGC 420
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ VYT+ ++ L ++ +A + + C T N I GLC GR++ A +
Sbjct: 421 IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAIN 480
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M+ G +P++ TYN ++ G KE + ++A L+ +MEE G+E N
Sbjct: 481 LFCQ-MEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELN 528
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 165/352 (46%), Gaps = 54/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G V R L F PN+ +N+LI G C E ++ E L ++ DPNVIT++T+
Sbjct: 233 GKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVIS 292
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+AL ++ +M F C P+V T T+++ G G M ++G
Sbjct: 293 SLSGIGNVELALAVWAKM---FVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEG 349
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------- 158
P+VV N + L GKM EA + M + +PN TY L+DGFA
Sbjct: 350 FEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGAS 409
Query: 159 -WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
W+K GC +V Y ++N C+ A SL + M+
Sbjct: 410 EIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEK-----------------MST 452
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+N PP++ + T+I GL +G V A+ +F + + C I+T N ++DGL K R+K
Sbjct: 453 DNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKE 512
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ M+ G+ ++VTYN + GFC G+ ++A LL M G++P+
Sbjct: 513 ALELVTE-MEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPD 563
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 158/371 (42%), Gaps = 50/371 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G A + RI P + +N L+ + +E R ++ + +PNV T
Sbjct: 127 VGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYT 186
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+N L A L EM N+ C+PDVV+ T +I + K G + +
Sbjct: 187 YNILLKALCKNNRVDGACKLLVEMSNKG---CEPDVVSYTTVISSMSKLGKVEEARELSI 243
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------G 156
+P+V N + + ++ K++E LL M+++ ++PN TY+T++
Sbjct: 244 RFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELA 303
Query: 157 FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
A W+K GC +VY++ L+ GY V +A+++ M EG + YNTL
Sbjct: 304 LAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHG 363
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M N P+ Y IDG K G ++ A ++++ + + C+
Sbjct: 364 LCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPN 423
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ +++ LC+ AW + M P+ VT+N I G C G+ + A L
Sbjct: 424 VVVYTSMVNVLCRSSMFSQAWSLIEK-MSTDNCPPNTVTFNTFIKGLCCSGRVECAINLF 482
Query: 315 LDMEETGLEPN 325
ME+ G PN
Sbjct: 483 CQMEQYGCSPN 493
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 141/334 (42%), Gaps = 47/334 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + ++ + +PN+ TF SL+KG GR+LEA ++ ++ +PNV+
Sbjct: 297 IGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVA 356
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+NTL L + E V+ + C P+V T +IDG K G MM
Sbjct: 357 YNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMM 416
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
G P+VV M + L + +A L+E M + PNT T+NT + G +
Sbjct: 417 TNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVE 476
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC ++ +YN +++G K+ +++A+ L EM +G+ + TYNT+F
Sbjct: 477 CAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIF 536
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
NV G EA+K+ + T N L C G+
Sbjct: 537 GGFCNV-----------------GKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGK 579
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+K A + L P+V Y ++ G C +
Sbjct: 580 VKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQ 613
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN VTFN+ IKGLC GR+ A LF ++ + C PN+ T+N + L+ N +E +
Sbjct: 457 PNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEAL-- 514
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
++VT M ++GM ++VT N + GK EEA LL M
Sbjct: 515 -------ELVT------------EMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKM 555
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK-------------GCR--HDVYSYNILINGYCKDRN 183
+ V P+ TYNTL + K G + +V +Y L+ G C
Sbjct: 556 LVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIG 615
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
VE+AV +ML+EGI +A T+N L + N
Sbjct: 616 VEEAVLYLDKMLNEGICLNAATWNALVRGLFN 647
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
SK +H +Y I+I ++ +V+ L ++M EGI
Sbjct: 72 SKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCS-----------------E 114
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
++ I+ + G +A+K+F I C T++ N L+D + R ++ I+
Sbjct: 115 DLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSN 174
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G P+V TYNI++ CK + A LL++M G EP+
Sbjct: 175 -MKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPD 218
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 171/360 (47%), Gaps = 41/360 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + ++ ++ F P+ T++ +I LC ++ +A +LF+++ P+V
Sbjct: 200 IGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYV 259
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+ TL + E+ N F + C P+VVT T +I K M+
Sbjct: 260 YTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMML 319
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKG 163
+G P++VT + D L K GK+E+A+ + ++M + +V P+ + ++DG +
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASN---- 375
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+V++Y L++G CK V++A L + M EG + Y+ L
Sbjct: 376 -EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M P+ + Y++ ID L+K+ + A+KV S + + C + +IDGL
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGL 494
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK+G+ A+ + ++M+ G P+VVTY MI GF K G+ +K LL M G PN
Sbjct: 495 CKVGKTDEAYKLM-VMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPN 553
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 138/342 (40%), Gaps = 57/342 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ V + +I GLC EA ++ C PNV+T+ L LN
Sbjct: 38 FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLN-------- 89
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
K + C I+ M+ +G P N + + G A LL+ M
Sbjct: 90 -----KEKLGRCKRIL------SMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKM 138
Query: 139 IQRDVNPNTCTYNTLMDGFAW----------WSKGCRHDVYSYNILING---------YC 179
+Q P YN L+ G ++ ++ +++N C
Sbjct: 139 VQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLC 198
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
E A ++ REM+S+G D +TY+ + M N + PD +
Sbjct: 199 GIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVY 258
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VYTT ID K GF+ +A F + C + T LI K ++ A +++ M+
Sbjct: 259 VYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMM 318
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ + G TP++VTY +I G CK G+ +KA+ + M++ +E
Sbjct: 319 L-SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVE 359
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 151/370 (40%), Gaps = 74/370 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ S PN++T+ L+ G + ++ R+ + C P+ FN+L
Sbjct: 64 FLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYC 123
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------------GFMMD 105
A L ++MV C+P V +I G+C G M++
Sbjct: 124 RSGDYAYAYKLLKKMVQ---CGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLE 180
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
G+ + V ++ + L GK E+A ++ M+ + P+T TY+ ++ SK
Sbjct: 181 AGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEK 240
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G DVY Y LI+ +CK +E A + EM +G + TY L
Sbjct: 241 AFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALI- 299
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
H Y K+ V +A +V+ + + C I T LIDGLCK G++
Sbjct: 300 ---------HAYL-------KSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKI 343
Query: 272 KIAWDIFHMLMQN----PGL------------TPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ A I+ ++ + P + P+V TY ++ G CK Q ++A LL
Sbjct: 344 EKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLK 403
Query: 316 DMEETGLEPN 325
M G EPN
Sbjct: 404 SMSVEGCEPN 413
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 149/375 (39%), Gaps = 74/375 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFK---KLNVFCCD--------------PNVITFN 62
TPN+VT+ +LI GLC G+I +A++++K K NV D PNV T+
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYG 383
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
L A +L + M E C+P+ V +IDG CK G M
Sbjct: 384 ALVDGLCKAYQVKEARDLLKSMSVEG---CEPNHVVYDALIDGCCKAGKLDEAQEVFTTM 440
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
++ G P+V T + + D L KD +++ A +L M++ PN Y ++DG
Sbjct: 441 LECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 500
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KGC +V +Y +I+G+ K VE + L ++M S+G + TY L
Sbjct: 501 DEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVL 560
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M P Y I+G N + ++ + I +
Sbjct: 561 INHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF--NREFIASLYLSFEISENDS 618
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ-NPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V LID K GRL+IA ++ L +P + + +I + KA
Sbjct: 619 VPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKA 678
Query: 311 NGLLLDMEETGLEPN 325
L DM G P
Sbjct: 679 FELYADMISRGSIPE 693
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 118/281 (41%), Gaps = 46/281 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L ++L + PN+V + +I GLC G+ EA +L + C+PNV+T+
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTA------ 524
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG + V C ++ M +G P+ VT V+ ++ G ++
Sbjct: 525 -----MIDGFGKSGR--VEKCLELLQQ------MSSKGCAPNFVTYRVLINHCCSTGLLD 571
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS------------YNILING 177
EA+ LLE M Q + Y +++GF + + Y +LI+
Sbjct: 572 EAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVPVAPVYRVLIDN 631
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+ K +E A+ L E+ S + F A N +++ T I+ L
Sbjct: 632 FIKAGRLEIALELNEELSS----------FSPFSAANQ-----NIHITLIENLSLAHKAD 676
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+A ++++ + + + + LI GL ++ R + A +
Sbjct: 677 KAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 98/260 (37%), Gaps = 41/260 (15%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M G R D TL +L K GK EA LLE + + P+T Y ++ G S
Sbjct: 1 MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLE---KEEFVPDTVLYTKMISGLCEASL 57
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C +V +Y IL+ G + + M++EG +N+
Sbjct: 58 FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGF----VLE-AMKVFSA 245
L A P VY I G+ + VL+ A K +
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGE 177
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ VL + LC IG+ + A+++ +M + G PD TY+ +I C
Sbjct: 178 MLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMM-SKGFIPDTSTYSKVIGYLCNAS 236
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +KA L +M+ G+ P+
Sbjct: 237 KVEKAFQLFQEMKRNGIAPD 256
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 163/355 (45%), Gaps = 51/355 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P++V++N+LI GLC ++ EA L ++ C PN +T TL L +E +
Sbjct: 30 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 89
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ K DVV +I G C +G M+ +G+ +VVT + + L
Sbjct: 90 LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLC 149
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G+ +EAN +L M + ++P+ TY L+DG KG
Sbjct: 150 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNV 209
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN+L++G CK+ V DA + R M+ +G +AD TYNTL +
Sbjct: 210 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
N + P+ + I GL K G + +A+K+ + + T N L+ G K G
Sbjct: 270 FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAG 329
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++K A +++ ++ + G P+ TY+I+I GFCK A GL +M GL P
Sbjct: 330 KIKEAMELWKQVL-DLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNP 383
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 170/376 (45%), Gaps = 55/376 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F ++V + +LI G C G + LF ++ NV+T+
Sbjct: 82 GRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTY 141
Query: 62 NTL--ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+ L L L ++E + E G+ PDVVT T +IDGLCKDG M
Sbjct: 142 SCLVHGLCRLGQWKEANTVLNAMAEHGI--HPDVVTYTGLIDGLCKDGRATHAMDLLNLM 199
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+++G P VT NV+ L K+G + +A +L +MI++ + TYNTLM G
Sbjct: 200 VEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKV 259
Query: 158 ---------AWWSKGC-RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ ++ C +V+++N+LI G CK+ + AV + R+M+ +G + TYN
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319
Query: 208 TLF---MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L + + P+S Y+ IDG K + A +F + H
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 379
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ N L+ LCK G L+ A +F M N PD++++N MI G K G Q
Sbjct: 380 GLNPALFDYNTLMASLCKEGSLEQAKSLFQE-MGNANCEPDIISFNTMIDGTLKAGDFQF 438
Query: 310 ANGLLLDMEETGLEPN 325
L + M E GL P+
Sbjct: 439 VKELQMKMVEMGLRPD 454
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 129/277 (46%), Gaps = 45/277 (16%)
Query: 93 IIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
++ GLC++G + + + + PD+V+ N + + L K K++EA LL M
Sbjct: 4 VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63
Query: 143 VNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
PN+ T TLMDG A KG DV Y LI+G+C + N++
Sbjct: 64 CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
L EML +GI A+ TY+ L MA + + PD YT IDGL
Sbjct: 124 ELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 183
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+G AM + + + + T N L+ GLCK G + A+ I M+++ G D
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK-GKKAD 242
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDM--EETGLEPN 325
VVTYN ++ G C +G+ +A L M E LEPN
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPN 279
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 158/356 (44%), Gaps = 58/356 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA+ LL ++ P+ VT+N L+ GLC EG +++A ++ + + +V+T+
Sbjct: 187 GRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTY 246
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL AL LF M + + +P+V T +I GLCK+G
Sbjct: 247 NTLMKGLCDKGKVDEALKLFNSMFDNENCL-EPNVFTFNMLIGGLCKEGRLTKAVKIHRK 305
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G ++VT N++ K GK++EA L + ++ PN+ TY+ L+DGF
Sbjct: 306 MVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRM 365
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ G ++ YN L+ CK+ ++E A SL +EM +
Sbjct: 366 LNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNA----------- 414
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
N PD + T IDG K G FV E +G LT T LI+ L
Sbjct: 415 ------NCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFST---LINRL 465
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
K+G L A ++ + G TPD + Y+ ++ G +G + LL M G
Sbjct: 466 SKLGELDEAKSALERMVAS-GFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
+N++ L ++G + EA L+ M ++ V+P+ +YNTL++G K
Sbjct: 1 MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
GC + + L++G CKD +++A+ L M +G AD Y TL
Sbjct: 61 AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTL----------- 109
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
I G NG + ++F + + T +CL+ GLC++G+ K A + +
Sbjct: 110 ------ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 163
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ G+ PDVVTY +I G CK+G+ A LL M E G EP+
Sbjct: 164 MAEH-GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPS 207
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVIT 60
G+ L ++L F PN T++ LI G C + R+L A+ LF ++ +P +
Sbjct: 329 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC-KMRMLNIAKGLFCEMRTHGLNPALFD 387
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+NTL A +LF+EM N C+PD+++ +IDG K G
Sbjct: 388 YNTLMASLCKEGSLEQAKSLFQEMGN---ANCEPDIISFNTMIDGTLKAGDFQFVKELQM 444
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M++ G+RPD +T + + + LSK G+++EA LE M+ P+ Y++L+ G + S
Sbjct: 445 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLS--S 502
Query: 162 KGCRHDVYS--YNILINGYCKDRNVEDAVSLC 191
KG ++ + + + G DR + + C
Sbjct: 503 KGDTTEIINLLHQMAAKGTVLDRKIVSTILTC 534
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 160/350 (45%), Gaps = 52/350 (14%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV 67
+ L +L S + P + FN L+ G C G + A +F ++ P V++FNTL
Sbjct: 233 WALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTL--- 289
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
CK ++ +G G M +G+ PDV T + + + L K+G+
Sbjct: 290 -----------ISGCCK-----SGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGR 333
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNI 173
++E + L + M R + PN T+ TL+DG ++G R D+ +YN
Sbjct: 334 LDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LING CK ++++A L EM + G++ D T+ TL M
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ D +T I GL + G V +A ++ + + + T +ID CK G +K+ +
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ MQ+ G P VVTYN +++G CK+GQ + A LL M G+ PN
Sbjct: 514 KLLKE-MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPN 562
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 96/246 (39%), Gaps = 67/246 (27%)
Query: 2 GRASGGFVLLG-----RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G+ GG V L +L P++VT+N+LI GLC G + EA RL ++ P
Sbjct: 362 GQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKP 421
Query: 57 NVITFNTL---------ALVALNLFEEMVNE------------FGVIC------------ 83
+ ITF TL AL + MV E +C
Sbjct: 422 DKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRML 481
Query: 84 --------KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
KPD T T +ID CK G M G P VVT N + + L K
Sbjct: 482 TDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 541
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----------SKGCRHDVYSYNIL 174
G+M+ A LL+ M+ V PN TYN L+DG + KG D SY L
Sbjct: 542 GQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNSEKGLVTDYASYTAL 601
Query: 175 INGYCK 180
+N K
Sbjct: 602 VNESSK 607
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 82/170 (48%), Gaps = 14/170 (8%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH--- 221
RH ++SY +++ C R + A SL ++S R + +TLF +I P H
Sbjct: 116 RHTLHSYCTMLHFLCLHRMLPQAHSLVSFLVS---RKGTNSASTLFSSILRTMPRHHHHH 172
Query: 222 -----VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI--A 274
V+ I +GF +A++ F + +K + I C L+ + ++ ++I +
Sbjct: 173 HSVGLVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERS 232
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
W ++ ++ + G P + +N+++HGFCK G A + ++ + GL P
Sbjct: 233 WALYLEVLDS-GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRP 281
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 165/354 (46%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++VT+NSLI G G + A +F+++ C+P+VIT+N+L + FE + F
Sbjct: 284 PDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSL-INCFCKFERIPQAFE 342
Query: 81 VI-------CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLS 123
+ +P+VVT + +ID CK G +++ G++P+ T + D
Sbjct: 343 YLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANC 402
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G + EA L M Q VN N TY L+DG A G +
Sbjct: 403 KIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQ 462
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAINN-- 215
Y L +GY K + +E A+ + EM + ++ D Y T MA+
Sbjct: 463 IYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREM 522
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ +S++YTT ID +K G EA+ + + + +T+ T LIDGLCKIG +
Sbjct: 523 MDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLV 582
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A F + +N GL P+++ Y +I G CK ++A L +M + G+ P+
Sbjct: 583 QQAVRYFDHMTRN-GLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPD 635
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 155/353 (43%), Gaps = 59/353 (16%)
Query: 27 NSLIKGLCTEGRILEAARLFKKL----NVFCCDPNVITFNTL--ALVALNLFEEM----- 75
S+IK GR F L NV C P F+TL LV L + EE
Sbjct: 148 RSVIKEWILLGREFPGCDFFDMLWSTRNV--CRPGFGVFDTLFNVLVDLGMLEEARQCFW 205
Query: 76 -VNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD---QGMRPDVVTLNVMTDNLSK 124
+N+F V+ P V +C ++ L K F D G+ P V T N++ L++
Sbjct: 206 KMNKFRVL--PKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAR 263
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G +E A L E M + + P+ TYN+L+DG+ GC DV +
Sbjct: 264 EGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVIT 323
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YN LIN +CK + A M G++ + TY+TL M
Sbjct: 324 YNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI 383
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ P+ YT+ ID K G + EA K+ S + L I T L+DGLC+ GR++
Sbjct: 384 RVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMR 443
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++F L++ G T + Y + HG+ K +KA +L +M + L+P+
Sbjct: 444 EAEELFGALLK-AGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 144/334 (43%), Gaps = 54/334 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+VT+ +L+ GLC +GR+ EA LF L N + +L A+++
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDIL 484
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + KPD++ I GLC+ MMD G+ + + D
Sbjct: 485 EEMNKK---NLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAY 541
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSK-GCRHDV 168
K GK EA LL+ M + TY L+DG F ++ G + ++
Sbjct: 542 FKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNI 601
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y LI+G CK+ +E+A +L EML +GI PD VYT+ ID
Sbjct: 602 MIYTALIDGLCKNDCLEEAKNLFNEMLDKGI-----------------SPDKLVYTSLID 644
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G K+G EA+ + + + L + LI G + G++++A + +++ G+
Sbjct: 645 GNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRK-GII 703
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
PD V ++ + + G +A L DM GL
Sbjct: 704 PDQVLCICLLRKYYELGDINEALALHDDMARRGL 737
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 36/215 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++ + + I GLC + I ++ + +++ N + TL A+NL
Sbjct: 494 PDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNL 553
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM + G+ K VVT +IDGLCK G M G++P+++ + D
Sbjct: 554 LQEM-QDLGI--KITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDG 610
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GCRHD 167
L K+ +EEA L M+ + ++P+ Y +L+DG + ++ G D
Sbjct: 611 LCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELD 670
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ +Y LI G+ + V+ A SL EML +GI D
Sbjct: 671 LCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPD 705
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 175/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++V +N++I G EG + +A LFK++ P+ +T++++ A
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ GV+ P+ T N+I G G M Q + PDVVT N++
Sbjct: 276 FLRQMVNK-GVL--PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMG 332
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD------------- 167
+L K GK++EA + + M + NP+ +YN +++G+A +KGC D
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA--TKGCLVDMTDLFDLMLGDGI 390
Query: 168 ---VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
+ ++N+LI Y ++ A+ + EM G++ + TY T+ A+
Sbjct: 391 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME 450
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ S I N+ L I + +I+ LC
Sbjct: 451 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLC 510
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N GL P V Y++++ G+C G+ +KA + M G+EPN
Sbjct: 511 KLGRVMDAQNIFDLTV-NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 164/357 (45%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P + TFN LIK G + +A +F ++ PNV+T+ T+ A+
Sbjct: 391 APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME 450
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GM D+V + + +
Sbjct: 451 KFNQMIDQ-GV--APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIIN 507
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + ++P Y+ LMDG+ A S G
Sbjct: 508 NLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 567
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH- 221
+ Y L+NGYCK +++ +SL REML +GI+ YN LF A VP
Sbjct: 568 NDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 627
Query: 222 -------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y+ + GL+KN EA+ +F + + I T N +I G+ +
Sbjct: 628 HEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQT 687
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A D+F + ++ GL P VVTY+IMI KEG ++A + M+ G EP+
Sbjct: 688 RRVEEAKDLFASISRS-GLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 162/373 (43%), Gaps = 54/373 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G++L + +++ N L+KG C R EA L + C P+V ++
Sbjct: 126 RPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSY 185
Query: 62 NTLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L L +L + M+ E G +C PDVV +IDG K+G
Sbjct: 186 SIL-LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 244
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PD VT + + L K M++A L M+ + V PN TYN L+ G++
Sbjct: 245 MVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQ 304
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W + R DV ++N+L+ CK +++A + M +G D +YN
Sbjct: 305 WKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 364
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + + P + I G + +AM +F+ + +H
Sbjct: 365 MLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHG 424
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I LC+IG++ A + F+ ++ + G+ PD Y+ +I GFC G KA
Sbjct: 425 VKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKA 483
Query: 311 NGLLLDMEETGLE 323
L+ ++ G+
Sbjct: 484 KELISEIMNNGMH 496
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 145/329 (44%), Gaps = 61/329 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ I+ + ++V F+S+I LC GR+++A +F P + ++ L
Sbjct: 486 LISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC 545
Query: 66 LV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
LV AL +F+ MV+ G+ +P+ V +++G CK G M+ +G++P
Sbjct: 546 LVGKMEKALRVFDAMVSA-GI--EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ N++ D L + G+ A M + + N CT
Sbjct: 603 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT--------------------- 641
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y+I++ G K+R ++A+ L +E+ + ++ D T NT+ I G+
Sbjct: 642 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTM-----------------IAGM 684
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++ V EA +F++I V + T + +I L K G ++ A D+F MQN G PD
Sbjct: 685 FQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS-MQNAGCEPD 743
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
N ++ K+ + +A L ++E
Sbjct: 744 SRLLNHVVRELLKKNEIVRAGAYLSKIDE 772
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L+ G C+ R A
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 212
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR G L +L P+ + +N +I GL GR + A F ++ N T
Sbjct: 582 IGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCT 641
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGL--------CKDGF--MM 104
++ + L F+E + F + K D++T +I G+ KD F +
Sbjct: 642 YSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASIS 701
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ P VVT ++M NL K+G +EEA + M P++ N ++ ++
Sbjct: 702 RSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIV 761
Query: 165 RHDVYSYNI 173
R Y I
Sbjct: 762 RAGAYLSKI 770
>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Glycine max]
Length = 589
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 165/337 (48%), Gaps = 48/337 (14%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L +++MS P+ +T+N +I GLC GR+ A L + +++ C P+ IT+N++ L
Sbjct: 188 LNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFD 247
Query: 69 LNLFEEMVN----EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVT 114
F + VN + C P ++T T +I+ +CK M +G PD+VT
Sbjct: 248 KGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVT 307
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK--------- 162
N + + SK GK E+ ++ ++ + PN TYNTL+ +W +
Sbjct: 308 YNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMN 367
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+YNIL+NG CK ++ A+S M++E D TYNTL
Sbjct: 368 ETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTL----------- 416
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ GL K GF+ E +++ + + C + T N +IDGL ++G ++ A +++
Sbjct: 417 ------LSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDE 470
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
M + G+ PD +T++ + GFC+ Q ++A LL +M
Sbjct: 471 -MVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEM 506
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 152/353 (43%), Gaps = 55/353 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLF------KKLNVFCCDPNVIT-FNTLALV--ALNLFEE 74
+T N +++ LC+ G++ AARL ++ F N+I F LV A +
Sbjct: 131 MTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNK 190
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
MV GV PD +T +I GLCK+G + G PD +T N + L
Sbjct: 191 MVMSGGV---PDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFD 247
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
G +A +++ P TY L++ + +GC D+ +
Sbjct: 248 KGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVT 307
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
YN L+N K ED + +LS G++ +A TYNTL ++ N
Sbjct: 308 YNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMN 367
Query: 216 ---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PP Y ++GL K+G + A+ +S + C I T N L+ GLCK G +
Sbjct: 368 ETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFID 427
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++L+ +P +VTYNI+I G + G + A L +M + G+ P+
Sbjct: 428 EGIQLLNLLV-GTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPD 479
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 116/273 (42%), Gaps = 57/273 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +++ +L PN VT+N+LI L G E + K +N P +T+
Sbjct: 319 GKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTY 378
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR------ 109
N L L L + ++ + + C PD++T ++ GLCK+GF +D+G++
Sbjct: 379 NILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGF-IDEGIQLLNLLV 437
Query: 110 -----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
P +VT N++ D L++ G ME A L + M+ + + P+ T+++L W
Sbjct: 438 GTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDEITHSSL----TW----- 488
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
G+C+ +E+A L +EM + R T Y + + +
Sbjct: 489 ------------GFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQ 536
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
PD +Y+ I + G + EA
Sbjct: 537 VLDLMVKGQCNPDERIYSALIKAVADGGMLKEA 569
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 104/247 (42%), Gaps = 35/247 (14%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCRH- 166
D +T N + L GK+ A L++VM ++ P+ + L+ GF + C+
Sbjct: 129 DEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTL 188
Query: 167 ----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
D +YN++I G CK+ + A+ L +M G DA TYN++
Sbjct: 189 NKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDK 248
Query: 211 ----MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
A+N PP YT I+ + K A++V + C I T
Sbjct: 249 GNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTY 308
Query: 259 NCLIDGLCKIGRLK-IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N L++ K G+ + A I ++L G+ P+ VTYN +IH G + + +L M
Sbjct: 309 NSLVNLTSKQGKYEDTALVILNLLSH--GMQPNAVTYNTLIHSLINHGYWDEVDDILKIM 366
Query: 318 EETGLEP 324
ET P
Sbjct: 367 NETSSPP 373
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
RE+L ++ T + + N D + L G + A ++ +
Sbjct: 105 RELLDSKKSVNSPTLSPEAPFVQN---DEMTNNEILQRLCSRGKLTVAARLIDVMARKSQ 161
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ +C LI G + G + A + ++ + G+ PD +TYN++I G CK G+ + A
Sbjct: 162 IPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGGV-PDTITYNMVIGGLCKNGRLRSAL 220
Query: 312 GLLLDMEETGLEPN 325
L+ DM +G P+
Sbjct: 221 DLVEDMSLSGCSPD 234
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 152/337 (45%), Gaps = 53/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++ F +I+GLC G I +A + +++ PNV T +L A L
Sbjct: 273 PNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRL 332
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
F ++V KP+V+T T +I G C++ M +QG+ P+ T + D
Sbjct: 333 FLKLVRSENH--KPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDG 390
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHD 167
K G E A L+ +M +PN CTYN +++G A+ + G + D
Sbjct: 391 HCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPD 450
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++YNIL++ +CK N+ A++L +ML GI+ PD H YTT I
Sbjct: 451 KFTYNILMSEHCKQENIRQALALFNKMLKIGIQ-----------------PDIHSYTTLI 493
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+ + E+ F + T +T +I G C+ G L +A FH L + G
Sbjct: 494 AVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRL-SDHGC 552
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
PD +TY +I G CK+ + +A L M E GL P
Sbjct: 553 APDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVP 589
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 53/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL---NLFE---- 73
PN T N +IK G + A LF+++ V P+ I++ + ++ N+ E
Sbjct: 168 PNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKW 227
Query: 74 -EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
++ E G + D T T II G+ ++D G+ P+++ M + L
Sbjct: 228 LSVMLERGFVV--DNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGL 285
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HD 167
K G +++A +LE M+ + PN T+ +L+DG W K R +
Sbjct: 286 CKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPN 345
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y +I+GYC++ + A L M +G+ P+++ YTT I
Sbjct: 346 VLTYTAMISGYCREDKLNRAEMLLSRMKEQGL-----------------VPNTNTYTTLI 388
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K G A + + + + + T N +++GLCK GR++ A+ + QN GL
Sbjct: 389 DGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQN-GL 447
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TYNI++ CK+ ++A L M + G++P+
Sbjct: 448 KPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPD 485
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 55/349 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----- 65
L +L F + TF +I +G A F++L +PN+I F +
Sbjct: 228 LSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCK 287
Query: 66 ----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRP 110
A + EEMV G KP+V T T++IDGLCK G+ + + +P
Sbjct: 288 RGSIKQAFEMLEEMV---GKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKP 344
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+V+T M ++ K+ A LL M ++ + PNT TY TL+DG
Sbjct: 345 NVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLM 404
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
S+G ++ +YN ++NG CK V++A + + G++ D TYN L
Sbjct: 405 NLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILM------ 458
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
H K + +A+ +F+ + I + LI C+ R+K + +
Sbjct: 459 --SEHC---------KQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES-E 506
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F G+ P TY MI G+C+EG A + + G P+
Sbjct: 507 MFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPD 555
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 39/241 (16%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +QG+ P+ TLN + S+ G +E A L E M R V P
Sbjct: 161 MHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQP----------------- 203
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------- 215
D SY +++ YCK N+ +A ML G D T+ + +
Sbjct: 204 ----DSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRA 259
Query: 216 -----------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ P+ +T I+GL K G + +A ++ + + T LIDG
Sbjct: 260 LWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDG 319
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G + A+ +F L+++ P+V+TY MI G+C+E + +A LL M+E GL P
Sbjct: 320 LCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVP 379
Query: 325 N 325
N
Sbjct: 380 N 380
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+PN+ T+N+++ GLC GR+ EA ++ + P+ T+N L
Sbjct: 412 FSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNIL-------------- 457
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
CK + NI L M+ G++PD+ + + ++ +M+E+ E
Sbjct: 458 MSEHCKQE-----NIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEA 512
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++ + P TY +++ G+ GC D +Y +I+G CK
Sbjct: 513 VRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKR 572
Query: 185 EDAVSLCREMLSEGI 199
++A SL M+ +G+
Sbjct: 573 DEARSLYDSMIEKGL 587
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF--V 236
C+ N + + + L GI D T+ + ++ D+ T + G+
Sbjct: 52 CESYNQHAHMRVSSQRLHFGIEVDFLTHEQAVSVVASLASDAGSMVTLSFFHWAIGYPKF 111
Query: 237 LEAMKVF-----SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
M+++ S IGN E C+++ ++GRLK A ++ + M N GL P+
Sbjct: 112 RHFMRLYIVCAMSLIGNRNSEKACEVMRCMVESFSEVGRLKEAVEMV-IEMHNQGLVPNT 170
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T N +I + G + A L +M G++P+
Sbjct: 171 RTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPD 204
>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 595
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 172/405 (42%), Gaps = 90/405 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL--------------------- 45
GF +LG + P++VTF +++ GLC EG + +A R
Sbjct: 132 GFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIIN 191
Query: 46 --------------FKKLNVFCCDPNVITFNT---------LALVALNLFEEMVNEFGVI 82
KK+ C+ +V +N + A +LF +M G
Sbjct: 192 GLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAWDLFSQMT---GKG 248
Query: 83 CKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+PD+ T +I GLC K+ MM +G+ PDV T NV+ K G + A
Sbjct: 249 IQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAK 308
Query: 133 CLLEVMIQRDVNPNTCTY----------NTLMDGFAWW----SKGCRHDVYSYNILINGY 178
+ M + + TY N + D + KGC ++ +Y LI+G+
Sbjct: 309 SIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGW 368
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ +N+ A+ EM++ G+ + T+NTL M + PD
Sbjct: 369 CEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDL 428
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+DGL+K F EAM +F + L I + +++G+C G+L A ++F
Sbjct: 429 QTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSY 488
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + G+ DVVTYNIMI+G CKEG A LL+ MEE G P+
Sbjct: 489 L-SSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPD 532
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFA- 158
P V N++ ++K A L++ M V PN T+N +++ GF+
Sbjct: 76 PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSV 135
Query: 159 ---WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ G + ++ ++NG C + NV A+ + G +D T +
Sbjct: 136 LGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAI------ 189
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I+GL K G A+ + C L + N ++DGLCK G + AW
Sbjct: 190 -----------INGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVDGLCKDGMVFEAW 238
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F M G+ PD+ TYN +IHG C + ++A LL +M G+ P+
Sbjct: 239 DLFSQ-MTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPD 287
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 31/202 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VT+ SLI G C + +A ++ DPN++T+NTL + A L
Sbjct: 356 PNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKEL 415
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
F M ++ G + PD+ TC I+DGL K F ++ +S ++E+
Sbjct: 416 FFVM-HKHGQL--PDLQTCAIILDGLFKCHFH---------------SEAMSLFRELEKM 457
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDA 187
N L+++I + C+ L D +S KG + DV +YNI+ING CK+ ++DA
Sbjct: 458 NSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDA 517
Query: 188 VSLCREMLSEGIRADATTYNTL 209
L +M G D TYN
Sbjct: 518 EDLLMKMEENGCPPDECTYNVF 539
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 49/222 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT--------- 60
LG ++ + PN+VT+N+LI G C G+ + A LF ++ P++ T
Sbjct: 380 FLGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 439
Query: 61 ---FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
F++ A+ E+M ++ D++ + I++G+C G ++ +G
Sbjct: 440 KCHFHSEAMSLFRELEKMNSDL------DIIIYSIILNGMCSSGKLNDALELFSYLSSKG 493
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
++ DVVT N+M + L K+G +++A LL M + P+ CTY
Sbjct: 494 VKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTY----------------- 536
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
N+ + G + + + M +G RA+ATT L
Sbjct: 537 ----NVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLL 574
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 51/315 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
T+ +++KG+C+ G + A + K++ C PNV+ + TL L + FG
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ-----NSRFG---- 469
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
D + M +QG+ PD+ N + LSK +M+EA L M++ +
Sbjct: 470 ----------DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNI--------------LINGYCKDRNVEDAVSL 190
PN TY + G+ S+ D Y + LIN YCK V +A S
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSA 579
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
R M+ +GI DA TY L ++GL+KN V +A ++F +
Sbjct: 580 YRSMVDQGILGDAKTYTVL-----------------MNGLFKNDKVDDAEEIFREMRGKG 622
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + LI+G K+G ++ A IF +++ GLTP+V+ YN+++ GFC+ G+ +KA
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 311 NGLLLDMEETGLEPN 325
LL +M GL PN
Sbjct: 682 KELLDEMSVKGLHPN 696
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/409 (24%), Positives = 170/409 (41%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + ++ ++ S PN+V + +LIK R +A R+ K++ P++ +
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490
Query: 62 NTLAL---------VALNLFEEMV---------------------NEFGVICK------- 84
N+L + A + EMV +EF K
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 85 ----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P+ V CT +I+ CK M+DQG+ D T V+ + L K+ K+++
Sbjct: 551 CGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILIN 176
A + M + + P+ +Y L++GF+ +G +V YN+L+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+C+ +E A L EM +G+ +A TY T+ M + + P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS VYTT +DG + V A+ +F C + N LI+ + K G+ ++ ++
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVL 789
Query: 279 HMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ LM + P+ VTYNIMI CKEG + A L M+ L P
Sbjct: 790 NRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 162/414 (39%), Gaps = 126/414 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
P++ +NSLI GL R+ EA ++ PN T+ + +
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK 543
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+ + + E GV+ P+ V CT +I+ CK M+DQG+ D T V+ +
Sbjct: 544 YVKEMRECGVL--PNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K+ K+++A + M + + P+ +Y L++GF+ +G +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V YN+L+ G+C+ +E A L EM +G+ +A TY T+
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------------SAIGN-----HK 250
M + + PDS VYTT +DG + V A+ +F +A+ N K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781
Query: 251 CVLTIETCNCLIDG-------------------LCKIGRLKIAWDIFHMLMQNPGLTPDV 291
L E N L+DG LCK G L+ A ++FH MQN L P V
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTV 840
Query: 292 VTY-----------------------------------NIMIHGFCKEGQHQKA 310
+TY +++I+ F KEG KA
Sbjct: 841 ITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 62/325 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
TPN++ +N L+ G C G I +A L +++V PN +T+ T+ A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM---------DQGMRPDVVTLNVMTD 120
LF+EM + G++ PD T ++DG C+ + +G N + +
Sbjct: 718 RLFDEMKLK-GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ K GK E T N LMDG ++ G +DV +YNI+I+ CK
Sbjct: 775 WVFKFGKTE---------------LKTEVLNRLMDG-SFDRFGKPNDV-TYNIMIDYLCK 817
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHV 222
+ N+E A L +M + + TY +L + + PD +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 223 YTTYIDGLYKNGFVLEAM----KVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
Y+ I+ K G +A+ ++F+ + C L+I TC L+ G K+G +++A +
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFC 302
+++ + PD T +I+ C
Sbjct: 938 MENMVRLQYI-PDSATVIELINESC 961
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 117/305 (38%), Gaps = 69/305 (22%)
Query: 89 TCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
T T +DG K M+ +G+ P T +V+ D L K ++E+A LL M V+ +
Sbjct: 253 TATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDN 312
Query: 148 CTYNTLMDGF-----AWWSKGCRHDVYSYNI----------------------------- 173
TY+ L+DG A +KG H++ S+ I
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 174 ---------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
LI GYC+++NV L EM I TY T+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + P+ +YTT I +N +AM+V + I N
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K R+ A +++N GL P+ TY I G+ + + A+ + +M E
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 321 GLEPN 325
G+ PN
Sbjct: 552 GVLPN 556
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 151 NTLMDGFAW--WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ L+ F W K + S++ L C + E A+S+ M+ A +++
Sbjct: 78 SKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPV-AEVWSS 136
Query: 209 LFMAINNV---PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ D ++ DG G++ EA+ VFS+ + V + C L+D L
Sbjct: 137 IVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDAL 196
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ RL + WD++ +++ + DV TY+++I C+ G Q +L E+
Sbjct: 197 LRWNRLDLFWDVYKGMVER-NVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 114/310 (36%), Gaps = 67/310 (21%)
Query: 68 ALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
AL++ E M+ + + +V C+ G DG V ++ D
Sbjct: 116 ALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG-----------VLFGILFDGYIAK 164
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
G +EEA + + ++ P L+D W + DV +Y
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224
Query: 172 NILINGYCKDRNVE---------------------DAVSLCREMLSEGIRADATTYNTLF 210
++LI +C+ NV+ A+ L M+ +G+ TY+ L
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M V D+H Y+ IDGL K A + + +H
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ +C I + K G ++ A +F ++ + GL P Y +I G+C+E ++
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIAS-GLIPQAQAYASLIEGYCREKNVRQGYE 403
Query: 313 LLLDMEETGL 322
LL++M++ +
Sbjct: 404 LLVEMKKRNI 413
>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1023
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 170/367 (46%), Gaps = 56/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +++M+ P++VT +S++ G C G++ EAA LF+++ DPN +++ T+
Sbjct: 343 LYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF 402
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ A NL +MV G+ D+VTCT ++DGL K G ++ + P
Sbjct: 403 KSGRVMEAFNLQSQMVVR-GI--SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAP 459
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+ VT + + D K GKME A +L+ M + V PN T++++++G+A
Sbjct: 460 NCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL 519
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ + Y ILI+GY K + A C+EM S + ++ L
Sbjct: 520 REMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRV 579
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + PD Y + IDG +K G L A+ + + +
Sbjct: 580 GRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAY 639
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI GL ++G+ + M+ GL PD +TYN +I+ +C +G+ + A +L +M+
Sbjct: 640 NALIKGLLRLGKYDPRYVCSRMI--ELGLAPDCITYNTIINTYCIKGKTEDALDILNEMK 697
Query: 319 ETGLEPN 325
G+ PN
Sbjct: 698 SYGIMPN 704
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 166/375 (44%), Gaps = 76/375 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P++ + N L+ LC G + A + +V D + +T+NT+ LV L
Sbjct: 127 PDVFSVNVLVHSLCKVGDLDLALGYLRNNDV--VDIDNVTYNTVIWGFCQKGLVDQGFGL 184
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EMV +C D +TC ++ G C+ G ++D G+ DV+ LN + D
Sbjct: 185 LSEMVKRG--LC-FDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDG 241
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------------AWWS--- 161
+ G M +A L+E + DV + TYNTL+ F +W
Sbjct: 242 YCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDED 301
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K + + +Y LI YCK VE++ SL ++M+ GI D T ++
Sbjct: 302 RLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSS 361
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + P+ Y T I+ L+K+G V+EA + S +
Sbjct: 362 ILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRG 421
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I TC ++DGL K+G+ K A ++F +++ L P+ VTY+ ++ G+CK G+ + A
Sbjct: 422 ISFDIVTCTTVMDGLFKVGKTKEAEEVFETILK-LNLAPNCVTYSALLDGYCKLGKMELA 480
Query: 311 NGLLLDMEETGLEPN 325
+L ME+ + PN
Sbjct: 481 ELVLQKMEKEHVPPN 495
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 145/337 (43%), Gaps = 51/337 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
++V +N+LIKGL G+ + + ++ P+ IT+NT+ AL++
Sbjct: 635 DVVAYNALIKGLLRLGK-YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDIL 693
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM +G++ P+ VT +I GLCK G M+ P +T +
Sbjct: 694 NEM-KSYGIM--PNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAY 750
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
S+ K ++ + E ++ + + YNTL+ F +G D+
Sbjct: 751 SRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADL 810
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+YN LI GYC +VE A+ +M +GI + TTYNTL ++N
Sbjct: 811 VTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNA------------ 858
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL + E K+ S + V T + L+ G ++G K I H+ M G
Sbjct: 859 GL-MEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTI-ILHIEMITKGFV 916
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P + TYN++I + K G+ +A LL D+ G PN
Sbjct: 917 PTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPN 953
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 145/364 (39%), Gaps = 75/364 (20%)
Query: 17 SCFTPNMVT------FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
S F P T F +LI+ T R A+ F + P + +NTL
Sbjct: 47 SIFIPPTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTL------ 100
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM-- 128
L++ N G++ + ++ M+ G+ PDV ++NV+ +L K G +
Sbjct: 101 LYQ--FNASGLVSQVKLMYSD-----------MLFCGVVPDVFSVNVLVHSLCKVGDLDL 147
Query: 129 -------------------------------EEANCLLEVMIQRDVNPNTCTYNTLMDG- 156
++ LL M++R + ++ T N L+ G
Sbjct: 148 ALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGY 207
Query: 157 -------FAWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+A W G DV N LI+GYC+ + A L ++ D
Sbjct: 208 CRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDI 267
Query: 204 TTYNTLFMAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
TYNTL A + + + I G +K+ L+ V + T+ T L
Sbjct: 268 VTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTL 327
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I CK ++ + ++ ++ N G+ PDVVT + +++GFC+ G+ +A L +M E G
Sbjct: 328 IAAYCKFVGVEESHSLYKKMIMN-GIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386
Query: 322 LEPN 325
L+PN
Sbjct: 387 LDPN 390
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 26/180 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G V+L ++ + ++VT+N+LI+G CT + +A + + ++ V PN+ T
Sbjct: 788 LGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITT 847
Query: 61 FNTL-------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------ 101
+NTL L EM NE G++ P+ T ++ G + G
Sbjct: 848 YNTLLGGLSNAGLMEEMMEETEKLVSEM-NERGLV--PNAATYDILVSGYGRVGNRKKTI 904
Query: 102 ----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M+ +G P + T NV+ + +K GKM EA LL ++ + PN+ TY+ L G+
Sbjct: 905 ILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGW 964
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 45/275 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--- 67
L +L+ F P +T L+K + + ++ +KL + ++ +NTL V
Sbjct: 728 LDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCR 787
Query: 68 ------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
A + +EMV G+ D+VT +I G C M G+ P+
Sbjct: 788 LGMTRKAKVVLDEMVKR-GI--SADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPN 844
Query: 112 VVTLNVMTDNLSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------- 158
+ T N + LS G MEE L+ M +R + PN TY+ L+ G+
Sbjct: 845 ITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTI 904
Query: 159 -----WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+KG + +YN+LI+ Y K + +A L ++L++G ++ TY+ L
Sbjct: 905 ILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGW 964
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N+ Y ID K + +E K+ +G
Sbjct: 965 LNLS-----YEPEIDRSLKRSYEIEVKKLLIEMGR 994
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 54/339 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFN---------TLALVALN 70
P+++T+N+LI GLC GR E L +++ C PN +T+N ++ A
Sbjct: 378 PDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARE 437
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF++M N+ GV P+VVT ++DG+CK G M +G++ + VT +
Sbjct: 438 LFDQM-NKDGV--PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIR 494
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
+E+A L + M++ +P+ Y TL+ G + K G
Sbjct: 495 AFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSP 554
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+ S+N+LING+C+ +++A + +EM + GI+ D TYNTL
Sbjct: 555 DIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTL----------------- 597
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I K G A ++ + V T+ T LI C G L A IF +
Sbjct: 598 ISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK 657
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ V YNI+I+ C++ Q A L+ DM+ G++PN
Sbjct: 658 VPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPN 696
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 157/375 (41%), Gaps = 89/375 (23%)
Query: 21 PNMVTFNSLIKGLCTEGR----------------ILEA------------ARLFKKLNVF 52
PN + LI LC GR ++EA AR FK++N
Sbjct: 268 PNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTL 327
Query: 53 CCD-------PNVITFNTL---------ALVALNLFEEMV--NEFGVICKPDVVTCTNII 94
+ PNV+TF L AL +FE+M G + +PDV+T +I
Sbjct: 328 LAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLI 387
Query: 95 DGLCK-----DGFMMDQGMR------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
DGLCK +G + + MR P+ VT N + D K +E A L + M + V
Sbjct: 388 DGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGV 447
Query: 144 NPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
PN T NTL+DG KG + + +Y LI +C N+E A+
Sbjct: 448 PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAME 507
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L EML G PD+ VY T I GL + G + A V S +
Sbjct: 508 LFDEMLEAG-----------------CSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEA 550
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
I + N LI+G C+ +L A+++ M+N G+ PD VTYN +I F K G
Sbjct: 551 GFSPDIVSFNVLINGFCRKNKLDEAYEMLKE-MENAGIKPDGVTYNTLISHFSKTGDFST 609
Query: 310 ANGLLLDMEETGLEP 324
A+ L+ M + GL P
Sbjct: 610 AHRLMKKMVKEGLVP 624
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 52/301 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +G + N VT+ +LI+ C I +A LF ++ C P+ I +
Sbjct: 465 GRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVY 524
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGF----------MM 104
TL + L+ ++ V+ K PD+V+ +I+G C+ M
Sbjct: 525 YTL-ISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEME 583
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+ G++PD VT N + + SK G A+ L++ M++ + P TY L+ +
Sbjct: 584 NAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLD 643
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ SK + V YNILIN C+ V+ A+SL +M +G++ + T+N
Sbjct: 644 EAMKIFRDMSSTSKVPPNTVI-YNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNA 702
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+F GL + ++ +A ++ + H C T L + L +
Sbjct: 703 MF-----------------KGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAV 745
Query: 269 G 269
G
Sbjct: 746 G 746
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 45/255 (17%)
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFA--------------- 158
N++ D L + G++++A LL+ M+Q + PN+ T + + +
Sbjct: 196 NILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIV 255
Query: 159 -WWSKGCRHDVYSYNI----LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
SK H+V+ +I LI+ C+ + A + ++ G +A + N L A+
Sbjct: 256 GLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTAL 315
Query: 214 N------------------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLT 254
++ P+ + I+ L K V EA++VF + G
Sbjct: 316 GRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFL 375
Query: 255 IE----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+E T N LIDGLCK+GR + + + P P+ VTYN +I G+CK + A
Sbjct: 376 VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAA 435
Query: 311 NGLLLDMEETGLEPN 325
L M + G+ PN
Sbjct: 436 RELFDQMNKDGVPPN 450
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 160/346 (46%), Gaps = 63/346 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGR---ILEAARLFKKLNVFCCDPNVITFNTL---------AL 66
P++VT+N++I G C GR + L K++ PN +TFN L
Sbjct: 216 LAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTA 275
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
A+ +FEEM + G+ VVT + ++ GLC +G M D G+ P++ TLN
Sbjct: 276 AAVRVFEEMKQQ-GIAA--SVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLN 332
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+ + K G M +A ++ M Q++V PN TY L+DG+ A K
Sbjct: 333 SVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGK 392
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G R + YN LI G+ ++ + L EM +G+RAD TYN L
Sbjct: 393 GVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVL------------- 439
Query: 223 YTTYIDGLYKNGFVLEAMKVFSA---IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I L G V +A+K+ +G LT N +I+G C+ G +K A++I
Sbjct: 440 ----IGALCVKGEVRKAVKLLDEMLMVGLEPVHLTY---NTIINGYCEKGNIKSAYEI-R 491
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ +VVTYN+ I C+ G+ ++ N LL +M E GL PN
Sbjct: 492 TRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPN 537
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 164/358 (45%), Gaps = 57/358 (15%)
Query: 2 GRASGGF---VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58
GRA + LL ++ + +PN VTFN L+ G C + A R+F+++ +V
Sbjct: 234 GRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASV 293
Query: 59 ITFNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---- 105
+T++ L + L +EM + G++ P++ T ++++G CK G M D
Sbjct: 294 VTYSALVWGLCSEGKVEEGVKLVDEM-KDLGLV--PNLATLNSVLNGFCKKGMMTDAEGW 350
Query: 106 ------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
+ ++P+VVT ++ D + KM++A + E M + V PN YN L+ GF
Sbjct: 351 IDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTR 410
Query: 159 ---WWS----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
W S KG R D+ +YN+LI C V AV L EML G+ T
Sbjct: 411 NGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLT 470
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
YNT+ I+G + G + A ++ + + K + T N I L
Sbjct: 471 YNTI-----------------INGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCL 513
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
C++G+++ ++ + +++ GL P+ VTY+ + G ++G G +T L+
Sbjct: 514 CRMGKMEETNELLNEMLEK-GLVPNGVTYDTIKEGMMEKGYTPDVRGFTCSEPQTPLK 570
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
RP ++N + L +++ A + ++R V+P+ T+N ++ G
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGD 206
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAV---SLCREMLSEGIRADATTYNT 208
AW G V +YN +I+GYCK +L +EM+ GI + T+N
Sbjct: 207 VAKDIRAW---GLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNV 263
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L ++G K+ A++VF + ++ T + L+ GLC
Sbjct: 264 L-----------------VNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSE 306
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+++ + M++ GL P++ T N +++GFCK+G A G + ME+ ++PN
Sbjct: 307 GKVEEGVKLVDE-MKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPN 362
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 176/370 (47%), Gaps = 55/370 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----N 62
F L ++ P++VT ++L+ GLC +GR EA LF+++ PN +T+ +
Sbjct: 263 AFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLID 322
Query: 63 TLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
TLA +L+L E+V+ GV+ D++ T ++D LCK+G +
Sbjct: 323 TLAKAQRGNESLSLLGEVVSR-GVVM--DLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK-- 162
P+ VT V+ D L K G ++ A +L M ++ ++PN T++++++G W K
Sbjct: 380 HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKAT 439
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----- 208
G +V +Y +I+G K E A+ + EML EG+ + ++
Sbjct: 440 DYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGL 499
Query: 209 -----------LFMAINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
LF +N V D YTT IDGL+K G + A KV + +
Sbjct: 500 KKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDA 559
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
N I+ LC +G+ K A + F MQ+ GL PD VTYN MI +EG+ KA LL
Sbjct: 560 VVYNVFINCLCMLGKSKEA-ESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLN 618
Query: 316 DMEETGLEPN 325
M+ + ++PN
Sbjct: 619 GMKRSSIKPN 628
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/412 (25%), Positives = 169/412 (41%), Gaps = 92/412 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F + R+ ++V +NSL+ GLC G + A + + +PNV+T
Sbjct: 187 VGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVT 246
Query: 61 FNTLALV----------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
+ T+ +V A +L+EEMV + GV+ PDVVT + ++ GLCKDG
Sbjct: 247 Y-TMFIVEYCRRNAVDDAFSLYEEMVRK-GVL--PDVVTLSALVGGLCKDGRFSEAYALF 302
Query: 103 -------------------------------------MMDQGMRPDVVTLNVMTDNLSKD 125
++ +G+ D++ + D L K+
Sbjct: 303 REMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKE 362
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
GK++EA + + + PN TY L+D K +V ++
Sbjct: 363 GKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTF 422
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
+ +ING K V A REM GI + TY T+ M
Sbjct: 423 SSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLC 482
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V + + + ++GL KNG + +A +F + +L LIDGL K G L
Sbjct: 483 EGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPA 542
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + L + L PD V YN+ I+ C G+ ++A L +M+ TGL+P+
Sbjct: 543 AFKVGQELTEK-NLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPD 593
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 150/365 (41%), Gaps = 70/365 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +L + +PN+VTF+S+I GL G + +A +++ DPNV+T+
Sbjct: 398 GNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTY 457
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
T+ AL+++ EM+ E G+ + F++D
Sbjct: 458 GTVIDGSFKCLGQEAALDVYHEMLCE-----------------GVEVNKFIVDS------ 494
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
+ + L K+GK+E+A L M +R V + Y TL+DG
Sbjct: 495 -----LVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQE 549
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
K D YN+ IN C ++A S EM S G++ D TYNT+
Sbjct: 550 LTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGK 609
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M +++ P+ Y+T I GL++ G V +A + + + + T T
Sbjct: 610 TAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRR 669
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
++ C GR H M N GL D+ YN ++ C G +KA +L +M
Sbjct: 670 VLQA-CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGR 728
Query: 321 GLEPN 325
G+ P+
Sbjct: 729 GIAPD 733
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 152/363 (41%), Gaps = 64/363 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G++ L + + P+ VT+N++I EG+ +A +L + PN+IT
Sbjct: 572 LGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLIT 631
Query: 61 FNTLALVALNLFEE--------MVNEFGVIC-KPDVVTCTNIIDGLCKDG---------- 101
++TL + LFE ++NE P +T ++ C G
Sbjct: 632 YSTL---IVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIH 687
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+MM+ G+ D+ N + L +G +A +LE M R + P+T T+N
Sbjct: 688 EWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNA-------- 739
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
LI G+ K ++++A S +ML GI + T+NTL
Sbjct: 740 -------------LILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIG 786
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + P + Y + G K +EA++++ + + + T N LI
Sbjct: 787 ESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALI 846
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
K+G + A ++F+ MQN G+ P TY+I++ G+ K + L DM+E G
Sbjct: 847 SDFSKVGMMSQAKELFNE-MQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGF 905
Query: 323 EPN 325
P+
Sbjct: 906 SPS 908
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 117/285 (41%), Gaps = 47/285 (16%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRP------------DVVTLNVMTDNLSKDGKMEEANC 133
D VT ++ GLC+DG + DVV N + D K G ME A
Sbjct: 136 DAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFA 195
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYC 179
+ E M + V + YN+L+ G + G +V +Y + I YC
Sbjct: 196 VAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYC 255
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+ V+DA SL EM+ +G+ D T + L M P+
Sbjct: 256 RRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHV 315
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HM 280
Y ID L K E++ + + + V+ + L+D LCK G++ A D+F H
Sbjct: 316 TYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHA 375
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L N TP+ VTY ++I CK G A +L +MEE + PN
Sbjct: 376 LSDNH--TPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPN 418
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 54/349 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + LL + S PN++T+++LI GL G + +A L +++ P +T
Sbjct: 608 GKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTH 667
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + + L + E M+N +C D+ ++ LC +G
Sbjct: 668 RRVLQACSQGRRSDLILEIHEWMMN--AGLC-ADITVYNTLVRVLCYNGMTRKAMVVLEE 724
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G+ PD +T N + K G ++ A + M+ ++PN T+NTL+ G
Sbjct: 725 MSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGR 784
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G +Y+IL+ GY K N +AV L EM+ +G +TYN
Sbjct: 785 IGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNA 844
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I K G + +A ++F+ + N + T T + L+ G K+
Sbjct: 845 L-----------------ISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKL 887
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R F M+ G +P T + + F K G +A LL ++
Sbjct: 888 -RNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLLKNL 935
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 46/249 (18%)
Query: 86 DVVTCTNIIDGLCKDGF---------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
D V+ ++ G + G M +G+ D VT+N + L +DG+++ A L E
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPEALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAE 161
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
VM++ + G DV +N L++GYCK ++E A ++ M +
Sbjct: 162 VMVR----------GGGIGGL---------DVVGWNSLVDGYCKVGDMETAFAVAERMKA 202
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+G+ D YN+L + GL + G V A + + +
Sbjct: 203 QGVGVDVVGYNSL-----------------VAGLCRAGEVDAARDMVDTMKRDGVEPNVV 245
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T I C+ + A+ ++ +++ G+ PDVVT + ++ G CK+G+ +A L +
Sbjct: 246 TYTMFIVEYCRRNAVDDAFSLYEEMVRK-GVLPDVVTLSALVGGLCKDGRFSEAYALFRE 304
Query: 317 MEETGLEPN 325
ME+ G PN
Sbjct: 305 MEKIGAAPN 313
>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 989
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 170/367 (46%), Gaps = 56/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +++M+ P++VT +S++ G C G++ EAA LF+++ DPN +++ T+
Sbjct: 343 LYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLF 402
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ A NL +MV G+ D+VTCT ++DGL K G ++ + P
Sbjct: 403 KSGRVMEAFNLQSQMVVR-GI--SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAP 459
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+ VT + + D K GKME A +L+ M + V PN T++++++G+A
Sbjct: 460 NCVTYSALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVL 519
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ + Y ILI+GY K + A C+EM S + ++ L
Sbjct: 520 REMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRV 579
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + PD Y + IDG +K G L A+ + + +
Sbjct: 580 GRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAY 639
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI GL ++G+ + M+ GL PD +TYN +I+ +C +G+ + A +L +M+
Sbjct: 640 NALIKGLLRLGKYDPRYVCSRMI--ELGLAPDCITYNTIINTYCIKGKTEDALDILNEMK 697
Query: 319 ETGLEPN 325
G+ PN
Sbjct: 698 SYGIMPN 704
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 165/375 (44%), Gaps = 76/375 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNL 71
P++ + N L+ LC G + A + +V D + +T+NT+ LV L
Sbjct: 127 PDVFSVNVLVHSLCKVGDLDLALGYLRNNDV--VDIDNVTYNTVIWGFCQKGLVDQGFGL 184
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EMV +C D +TC ++ G C+ G ++D G+ DV+ LN + D
Sbjct: 185 LSEMVKRG--LC-FDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDG 241
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------------AWWS--- 161
+ M +A L+E + DV + TYNTL+ F +W
Sbjct: 242 YCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDED 301
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K + + +Y LI YCK VE++ SL ++M+ GI D T ++
Sbjct: 302 RLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSS 361
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + P+ Y T I+ L+K+G V+EA + S +
Sbjct: 362 ILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRG 421
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I TC ++DGL K+G+ K A ++F +++ L P+ VTY+ ++ G+CK G+ + A
Sbjct: 422 ISFDIVTCTTVMDGLFKVGKTKEAEEVFETILK-LNLAPNCVTYSALLDGYCKLGKMELA 480
Query: 311 NGLLLDMEETGLEPN 325
+L ME+ + PN
Sbjct: 481 ELVLQKMEKEHVPPN 495
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 37/313 (11%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
++V +N+LIKGL G+ + + ++ P+ IT+NT+ AL++
Sbjct: 635 DVVAYNALIKGLLRLGK-YDPRYVCSRMIELGLAPDCITYNTIINTYCIKGKTEDALDIL 693
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
EM +G++ P+ VT +I GLCK GF+ P +T + S+ K ++
Sbjct: 694 NEM-KSYGIM--PNAVTYNILIGGLCKTGFV------PTPITHKFLVKAYSRSEKADKIL 744
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ E ++ + ++D +G D+ +YN LI GYC +VE A+
Sbjct: 745 QIHEKLVASGLELKR--QKVVLDEMV--KRGISADLVTYNALIRGYCTGSHVEKALKTYS 800
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+M +GI + TTYNTL ++N GL + E K+ S + V
Sbjct: 801 QMFVDGIAPNITTYNTLLGGLSNA------------GL-MEEMMEETEKLVSEMNERGLV 847
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T + L+ G ++G K I H+ M G P + TYN++I + K G+ +A
Sbjct: 848 PNAATYDILVSGYGRVGNRKKTI-ILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARE 906
Query: 313 LLLDMEETGLEPN 325
LL D+ G PN
Sbjct: 907 LLNDLLTKGRIPN 919
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 145/364 (39%), Gaps = 75/364 (20%)
Query: 17 SCFTPNMVT------FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
S F P T F +LI+ T R A+ F + P + +NTL
Sbjct: 47 SIFIPPTKTHLYVSFFCTLIRLYLTHDRFSTASATFSHMRALGLVPTLPFWNTL------ 100
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM-- 128
L++ N G++ + ++ M+ G+ PDV ++NV+ +L K G +
Sbjct: 101 LYQ--FNASGLVSQVKLMYSD-----------MLFCGVVPDVFSVNVLVHSLCKVGDLDL 147
Query: 129 -------------------------------EEANCLLEVMIQRDVNPNTCTYNTLMDG- 156
++ LL M++R + ++ T N L+ G
Sbjct: 148 ALGYLRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVKRGLCFDSITCNILVKGY 207
Query: 157 -------FAWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+A W G DV N LI+GYC+ + A L ++ D
Sbjct: 208 CRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDI 267
Query: 204 TTYNTLFMAINNVPPDSHVYTTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
TYNTL A + + + I G +K+ L+ V + T+ T L
Sbjct: 268 VTYNTLLKAFCKTGDLTRAESLFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTL 327
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I CK ++ + ++ ++ N G+ PDVVT + +++GFC+ G+ +A L +M E G
Sbjct: 328 IAAYCKFVGVEESHSLYKKMIMN-GIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMG 386
Query: 322 LEPN 325
L+PN
Sbjct: 387 LDPN 390
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
V+L ++ + ++VT+N+LI+G CT + +A + + ++ V PN+ T+NTL
Sbjct: 762 VVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGL 821
Query: 65 ---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
L EM NE G++ P+ T ++ G + G M+
Sbjct: 822 SNAGLMEEMMEETEKLVSEM-NERGLV--PNAATYDILVSGYGRVGNRKKTIILHIEMIT 878
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+G P + T NV+ + +K GKM EA LL ++ + PN+ TY+ L G+
Sbjct: 879 KGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGW 930
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 81/310 (26%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------- 64
R++ P+ +T+N++I C +G+ +A + ++ + PN +T+N L
Sbjct: 659 SRMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT 718
Query: 65 ------------------------------ALVALNL--------FEEMVNEFGVICKPD 86
LVA L +EMV G+ D
Sbjct: 719 GFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKR-GI--SAD 775
Query: 87 VVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG----KMEEAN 132
+VT +I G C M G+ P++ T N + LS G MEE
Sbjct: 776 LVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETE 835
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGY 178
L+ M +R + PN TY+ L+ G+ +KG + +YN+LI+ Y
Sbjct: 836 KLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDY 895
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
K + +A L ++L++G ++ TY+ L N+ Y ID K + +E
Sbjct: 896 AKSGKMIEARELLNDLLTKGRIPNSFTYDILTCGWLNLS-----YEPEIDRSLKRSYEIE 950
Query: 239 AMKVFSAIGN 248
K+ +G
Sbjct: 951 VKKLLIEMGR 960
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 160/360 (44%), Gaps = 60/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALV 67
PN+ T+N L++ LC GR+ EA + + C PN +T+NTL A
Sbjct: 7 APNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAER 66
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
++L E N KP++VT ++++GLCK G M+ +G+ PDVV+ N
Sbjct: 67 VVSLMREEGN-----AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNT 121
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKG 163
+ K G + E+ + M QR + P+ T+ +L+ +G
Sbjct: 122 LLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERG 181
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
R + ++ LI+G+CK ++DA+ EM GI+ YN L
Sbjct: 182 LRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLAR 241
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M V PD Y+T I G K G + A ++ + + T + LI GL
Sbjct: 242 ELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL 301
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C+ RL A ++F ++Q G+ PD TY +I G CKEG +KA L +M G+ P+
Sbjct: 302 CEEKRLNDACELFENMLQ-LGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 166/368 (45%), Gaps = 56/368 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVIT 60
GR ++G + + PN VT+N+L+ C G + A R+ + PN++T
Sbjct: 24 GRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 83
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FN++ A +F+EMV E PDVV+ ++ G CK G
Sbjct: 84 FNSMVNGLCKAGRMEGARKVFDEMVREG---LAPDVVSYNTLLSGYCKVGCLHESLAVFS 140
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G+ PDVVT + K G +E+A L+ M +R + N T+ L+DGF
Sbjct: 141 EMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG 200
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G + V YN LINGYCK ++ A L REM ++ ++ D TY+
Sbjct: 201 FLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYS 260
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ M V PD+ Y++ I GL + + +A ++F +
Sbjct: 261 TIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQL 320
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T LIDG CK G ++ A + H M G+ PDVVTY+++I+G K + ++
Sbjct: 321 GVQPDEFTYTTLIDGHCKEGNVEKALSL-HDEMIRKGVLPDVVTYSVLINGLSKSARTKE 379
Query: 310 ANGLLLDM 317
A+ LL +
Sbjct: 380 AHRLLFKL 387
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 169/391 (43%), Gaps = 72/391 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + ++ P++V++N+L+ G C G + E+ +F ++ P+V+TF
Sbjct: 95 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTF 154
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+L A+ L +M E G+ + + VT T +IDG CK GF+ D
Sbjct: 155 TSLIHATCKAGNLEQAVALVAQM-RERGL--RMNEVTFTALIDGFCKKGFLDDALLAVEE 211
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G++P VV N + + K G+M+ A L+ M + V P+ TY+T++ G+
Sbjct: 212 MRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 271
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D +Y+ LI G C+++ + DA L ML G++ D TY T
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 331
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PD Y+ I+GL K+ EA ++ + +
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391
Query: 251 CV---------------LTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTY 294
V ++ L+ G C G +K A ++ ML +N L D Y
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL--DGSVY 449
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+IHG C+ G +KA M +G PN
Sbjct: 450 SILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 115/256 (44%), Gaps = 34/256 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ P+V T N++ L G++EEA ++ M PN TYNTL+ F +
Sbjct: 1 MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60
Query: 163 ---------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ ++ ++N ++NG CK +E A + EM+ EG+ D +YN
Sbjct: 61 LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + PD +T+ I K G + +A+ + + +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T LIDG CK G L A M+ G+ P VV YN +I+G+CK G+
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEE-MRKCGIQPSVVCYNALINGYCKLGRMDL 239
Query: 310 ANGLLLDMEETGLEPN 325
A L+ +ME ++P+
Sbjct: 240 ARELIREMEAKRVKPD 255
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 119/278 (42%), Gaps = 85/278 (30%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L ++L P+ +T++SLI+GLC E K+LN C
Sbjct: 269 VGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEE----------KRLNDAC------- 311
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
LFE M+ + GV +PD T T +IDG CK+G M+ +G+ P
Sbjct: 312 ---------ELFENML-QLGV--QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLP 359
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------D 155
DVVT +V+ + LSK + +EA+ LL + D P+ Y+ LM
Sbjct: 360 DVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLK 419
Query: 156 GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
GF + + + D Y+ILI+G+C+ NV A+S ++ML G
Sbjct: 420 GFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGF-- 477
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
P+S + + GL++ G V+EA
Sbjct: 478 ---------------SPNSTSTISLVRGLFEEGMVVEA 500
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 161/350 (46%), Gaps = 63/350 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L F PN T+N LI+G C G++ +A +F + PN T NTL L
Sbjct: 12 LFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC 71
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------MMDQGMRPDVV 113
AL LF EM + G P + ++ G G M G+ PD+
Sbjct: 72 EIGQMSSALKLFREM--QAGPFL-PTSASHNILLRGFFMAGRAIEFFKEMKASGVEPDLE 128
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
+ +++ LS G+M EA+ L M +P+ TYN LMDG+ +
Sbjct: 129 SYHILLSALSDSGRMAEAHALFSAMT---CSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 185
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
G +V++Y+I+IN YCK VE+A + +M+ +A T+NTL
Sbjct: 186 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTL---------- 235
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GRLKIAWDIF 278
I G K G + +A+K+F+ + C TI T N LID LCK G + A D+F
Sbjct: 236 -------IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLF 288
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG---LLLDMEETGLEPN 325
+ L + GLTP +VTYN +I GF ++AN LL M G +P+
Sbjct: 289 NKL-EGAGLTPTIVTYNSLIQGF-----SERANDGLRLLCHMHAEGCKPD 332
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 161/370 (43%), Gaps = 57/370 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L + F P + N L++G GR +E FK++ +P++ +
Sbjct: 73 IGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIE---FFKEMKASGVEPDLES 129
Query: 61 FNTLALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQ 106
++ L L AL+ M + C PD++T ++DG CK G ++
Sbjct: 130 YHIL-LSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 188
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P+V T +++ + K K+EEA + MI+ + PN T+NTL+ GF
Sbjct: 189 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 248
Query: 158 ----AWWSK-GCRHDVYSYNILINGYCKDRN-VEDAVSLCREMLSEGIRADATTYNTLF- 210
A K GC+ + +YN LI+ CK R V AV L ++ G+ TYN+L
Sbjct: 249 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 308
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M PD Y I GL V +A ++F+ + C +
Sbjct: 309 GFSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGMA---CAPNV 365
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N LI GLC +++ A +I + PD+ T+N +I FCK G A ++
Sbjct: 366 TTFNFLIRGLCAQKKVEEARNILDRMT-----APDMTTFNTIILAFCKAGAMHDAREVMK 420
Query: 316 DMEETGLEPN 325
DM + G PN
Sbjct: 421 DMLKHGFYPN 430
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----------ALVALN 70
PN VTFN+LI G C G + +A +LF ++ C ++T+NTL A++
Sbjct: 227 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 286
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK---DGF-----MMDQGMRPDVVTLNVMTDNL 122
LF ++ G P +VT ++I G + DG M +G +PDV+T N + L
Sbjct: 287 LFNKLE---GAGLTPTIVTYNSLIQGFSERANDGLRLLCHMHAEGCKPDVITYNCLISGL 343
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--GCRH--------DVYSYN 172
++E+A L M PN T+N L+ G K R+ D+ ++N
Sbjct: 344 CSANRVEDAQRLFNGMA---CAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFN 400
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+I +CK + DA + ++ML G + TY T +A
Sbjct: 401 TIILAFCKAGAMHDAREVMKDMLKHGFYPN--TYTTYALA 438
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 33/228 (14%)
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYN 172
K ++A L + ++ PN TYN L+ GF S G + + N
Sbjct: 5 KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----FMA-----------INNVP 217
L+ G C+ + A+ L REM + + ++N L FMA + V
Sbjct: 65 TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVE 124
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD Y + L +G + EA +FSA+ C I T N L+DG CKIG+ A +
Sbjct: 125 PDLESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGYCKIGQTYEAQSL 181
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G P+V TY+I+I+ +CK + ++A + + M E+ PN
Sbjct: 182 MKEILK-AGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 228
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L ++ + TP +VT+NSLI+G R + RL ++ C P+VIT+N L L
Sbjct: 287 LFNKLEGAGLTPTIVTYNSLIQGFSE--RANDGLRLLCHMHAEGCKPDVITYNCLISGLC 344
Query: 68 ALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTD 120
+ N E+ F G+ C P+V T +I GLC ++D+ PD+ T N +
Sbjct: 345 SANRVEDAQRLFNGMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTAPDMTTFNTIIL 404
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
K G M +A +++ M++ PNT T L G SKG
Sbjct: 405 AFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGI-QSSKG 446
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 154/345 (44%), Gaps = 52/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
++L + P FN L++ + G++ A +F ++ P V+TFNTL
Sbjct: 234 QLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTL-------- 285
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+CK + N + GL M G+ PDV T L K G++++A
Sbjct: 286 ------MSGMCKASDLNSANALRGL-----MAKAGVAPDVYTYGAFMQGLCKAGRIQDAV 334
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+ E M +R VNPNT + TL+D ++G + D+ +YN L NG
Sbjct: 335 EMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGL 394
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ R+++ A + EM + G++ D TY TL M+ V D
Sbjct: 395 CRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDE 454
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YTT I GL K+G +++ ++ + T +ID CK +K + +
Sbjct: 455 VTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKE 514
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQN G P VVTYN++++GFC GQ + A+ LL M G+ P+
Sbjct: 515 -MQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPD 558
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 53/320 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
L G + + P++ T+ + ++GLC GRI +A +F+++ +PN + F TL
Sbjct: 300 ALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTL---- 355
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
CK N+ GL M +G++ D+V N + + L + +
Sbjct: 356 ----------IDAHCKEG-----NVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDL 400
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+ AN ++E M + P+ TY TL+DGF +G D +Y L
Sbjct: 401 KAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL 460
Query: 175 INGYCKD-RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
I+G K R+V+ LC EM+ G+ D TT YT ID KN
Sbjct: 461 ISGLSKSGRSVDSERILC-EMMEAGLEPDNTT-----------------YTMVIDAFCKN 502
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
V K+ + N + T N +++G C +G++K A D+ M N G+ PD +T
Sbjct: 503 SDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNA-DMLLNAMLNIGVCPDDIT 561
Query: 294 YNIMIHGFCKEGQHQKANGL 313
YNI++ G CK G+ + A L
Sbjct: 562 YNILLDGHCKHGKVRDAEEL 581
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 114/270 (42%), Gaps = 70/270 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + G L + ++V +N+L GLC R L+AA
Sbjct: 363 GNVAAGLELHREMATRGIKTDLVAYNALANGLC-RVRDLKAAN----------------- 404
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
++ EEM N KPD VT T +IDG CK+G M D+G+ D
Sbjct: 405 --------DIVEEMRNNG---LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALD 453
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VT + LSK G+ ++ +L M++ + P+ TY ++D F
Sbjct: 454 EVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLK 513
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+KG + V +YN+++NG+C +++A L ML+ G+ D TYN L
Sbjct: 514 EMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNIL-------- 565
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+DG K+G V +A ++ SA G
Sbjct: 566 ---------LDGHCKHGKVRDAEELKSAKG 586
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 29/195 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P+ VT+ +LI G C EG + A + ++++ + +T+ TL + L+ V+
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL-ISGLSKSGRSVDS 473
Query: 79 FGVICK-------PDVVTCTNIIDGLCKD-----GF-----MMDQGMRPDVVTLNVMTDN 121
++C+ PD T T +ID CK+ GF M ++G +P VVT NV+ +
Sbjct: 474 ERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNG 533
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----------SKGCRHDVYS 170
G+M+ A+ LL M+ V P+ TYN L+DG +KG D
Sbjct: 534 FCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEELKSAKGMVSDFGL 593
Query: 171 YNILINGYCKDRNVE 185
Y LIN + K ++ +
Sbjct: 594 YTSLINEFVKKKSTK 608
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/349 (31%), Positives = 162/349 (46%), Gaps = 61/349 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
++ I P V+FN+LI GLC + E RL K + P+V T++ L
Sbjct: 244 LIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGL 303
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
VA LF+EM + G+ +P+ +T T +IDG C+ M+ G++
Sbjct: 304 CKEGRLDVAEQLFDEM-QQRGL--RPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVK 360
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PD+V N + + L K G + +A L++ M + P+ TY TL+DG+
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEI 420
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+G D ++ LI+G+C+D V DA REM+ G++
Sbjct: 421 RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMK--------------- 465
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD YT IDG K G V K+ I HK + T N L++GLCK G++K
Sbjct: 466 --PDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP--GVITYNVLMNGLCKQGQMKN 521
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A ++ M N G+TPD +TYNI++ G CK G KA LL E GL
Sbjct: 522 A-NMLLEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLKLRNEKGL 566
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 153/360 (42%), Gaps = 72/360 (20%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV 67
+ IL F P + +N LI C EG I +A +F ++ P ++FNTL
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTL--- 264
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNV 117
I+GLCK +GF + + M PDV T +V
Sbjct: 265 --------------------------INGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSV 298
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKG 163
+ L K+G+++ A L + M QR + PN T+ L+DG + G
Sbjct: 299 LIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMG 358
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ D+ YN L+NG CK +V A L EM G++ D TY TL
Sbjct: 359 VKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAM 418
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M V D+ +T I G ++G V +A + + T +IDG
Sbjct: 419 EIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGY 478
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK G +K+ + + MQ G P V+TYN++++G CK+GQ + AN LL M G+ P+
Sbjct: 479 CKKGNVKMGFKLLKE-MQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPD 537
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 97/231 (41%), Gaps = 46/231 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + M P+ +T+ +LI G C EG + A + K +N + + F L
Sbjct: 385 LVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFC 444
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A EMV E G+ KPD T T +IDG CK G M G +P
Sbjct: 445 RDGRVRDAERTLREMV-EAGM--KPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP 501
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
V+T NV+ + L K G+M+ AN LLE M+ V P+ T
Sbjct: 502 GVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDIT--------------------- 540
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
YNIL+ G+CK+ ED + L E +G+ D Y +L N D
Sbjct: 541 YNILLEGHCKNGKAEDLLKLRNE---KGLIVDYAYYTSLVSEYNKSLKDRQ 588
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 10/207 (4%)
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+S+ GK A+ ++ + ++ LM A+W G D L+ ++
Sbjct: 128 VSRKGKDSAASVFAAILDTAGTRCSNFVFDALM--IAYWDSGFVSDAIQCFRLV----RN 181
Query: 182 RNVEDAVSLCREMLSEGIRADA-TTYNTLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLE 238
N + C +L + I +++ T T + I PP Y I+ K G + +
Sbjct: 182 SNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRD 241
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A +F+ I T + N LI+GLCK L + + + +N + PDV TY+++I
Sbjct: 242 AKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN-RIYPDVFTYSVLI 300
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
HG CKEG+ A L +M++ GL PN
Sbjct: 301 HGLCKEGRLDVAEQLFDEMQQRGLRPN 327
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 1/160 (0%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
RH SY + N + ++ S+ R ++S + A + + + V+
Sbjct: 98 RHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVFD 157
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ + +GFV +A++ F + N + C L+D + W + +++
Sbjct: 158 ALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEY 217
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G P V YNI+I+ FCKEG + A + ++ + GL P
Sbjct: 218 -GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRP 256
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF LL + ++ P ++T+N L+ GLC +G++ A L + + P+ IT+
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541
Query: 62 NTL 64
N L
Sbjct: 542 NIL 544
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 167/350 (47%), Gaps = 46/350 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F PN+ T+N L+K LC ++ A +L +++ C PN +++ T+ ++ + + +E
Sbjct: 176 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEG- 234
Query: 77 NEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDG 126
+ +P V +I+GLCK+ M+++G+ P+V++ + + + LS G
Sbjct: 235 RQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSG 294
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK-----GCRHDVYSY 171
++E A LL M++R +PN T ++L+ D W++ G + +V +Y
Sbjct: 295 QIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAY 354
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N L+ G+C N++ AVS+ M G + TY +L M
Sbjct: 355 NTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLT 414
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P+ VYT+ ++ L ++ EA + + C ++ T N I GLC GRL
Sbjct: 415 SGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 474
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A +F + Q P++VTYN ++ G K + ++A GL ++ G+E
Sbjct: 475 AEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 524
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 147/335 (43%), Gaps = 48/335 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPN----VITFNT---LALVAL 69
F +TF +I+ L +G++ L + KL F C + VI+ LA A+
Sbjct: 71 FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 130
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+F + EFG C P V +++D L + M G P+V T NV+
Sbjct: 131 EMFYR-IKEFG--CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLL 187
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------AWWSKGCRHDVYS 170
L K+ K++ A LL M + PN +Y T++ ++ V
Sbjct: 188 KALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEPVVSV 247
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN LING CK+R+ + V L EM+ +GI + +Y+TL I+ L
Sbjct: 248 YNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTL-----------------INEL 290
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+G + A + + + C I T + L+ G G A D+++ +++ GL P+
Sbjct: 291 SNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPN 350
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV YN ++ GFC G KA + L MEE G PN
Sbjct: 351 VVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPN 385
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 149/361 (41%), Gaps = 57/361 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G V GR L F P + +N+LI GLC E L ++ PNVI+++TL
Sbjct: 229 GMVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLIN 288
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------- 106
+A +L +M+ C P++ T ++++ G G D
Sbjct: 289 ELSNSGQIELAFSLLAQMLKRG---CHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGF 345
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
G++P+VV N + G +++A + M + +PN TY +L++GF
Sbjct: 346 GLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGA 405
Query: 159 --WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
W+K GC +V Y ++ C+ ++A SL M E T+N
Sbjct: 406 VYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKG 465
Query: 213 INNV-------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ + PP+ Y +DGL K + EA + I
Sbjct: 466 LCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEW 525
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T N L+ G C G IA + +M N G +PD +T N++I +CK+G+ ++A +
Sbjct: 526 STSTYNTLLHGSCNAGLPGIALQLVGKMMVN-GKSPDEITMNMIILAYCKQGKAERAVQM 584
Query: 314 L 314
L
Sbjct: 585 L 585
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 100/248 (40%), Gaps = 68/248 (27%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN+ T+ SLI G G + A ++ K+ C PNV+ + ++ AL + F+E +
Sbjct: 383 SPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAES 442
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFM---------MDQGMR--PDVVTLNVMTDNL 122
++ C P V T I GLC G + M+Q R P++VT N + D L
Sbjct: 443 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGL 502
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------------------- 156
+K ++EEA L + R V +T TYNTL+ G
Sbjct: 503 AKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDE 562
Query: 157 -------FAWWSKG------------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
A+ +G R DV SY +I G C+ ED V L
Sbjct: 563 ITMNMIILAYCKQGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILF 622
Query: 192 REMLSEGI 199
M+SE I
Sbjct: 623 ERMISERI 630
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 54/180 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEE-- 74
P++ TFN+ IKGLC GR+ A ++F+++ + C PN++T+N L L N EE
Sbjct: 453 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAY 512
Query: 75 ------------------------------------MVNEFGVICK-PDVVTCTNIIDGL 97
+V + V K PD +T II
Sbjct: 513 GLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAY 572
Query: 98 CKDG------FMMD------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
CK G M+D + RPDV++ + L + E+ L E MI + P
Sbjct: 573 CKQGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILFERMISERIIP 632
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 181/373 (48%), Gaps = 59/373 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
ASG R+L SC P+++++N+++ G C G++ A RL + + +P+ T+NT
Sbjct: 102 ASGRTAEARRVLASC-EPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM---EPDTYTYNT 157
Query: 64 LALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MM 104
L AL + ++M+ C PDVVT T +++ CK G+ M
Sbjct: 158 LIRGLCGRGRTDNALAVLDDMLRRG---CVPDVVTYTILLEATCKRSGYKQAVKLLDEMR 214
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS 161
D+G PD+VT NV+ + + ++G++++A L+ + PNT +YN ++ G W
Sbjct: 215 DKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWE 274
Query: 162 -----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG +V ++N+LI+ C+ VE A+ + ++ G ++ +YN +
Sbjct: 275 DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPIL 334
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + PD Y T + L + G V A+++ + + C
Sbjct: 335 HAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCT 394
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ + N +IDGL K G+ + A ++ + ++ GL PD++TY+ + G C+EG+ ++A
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTK-GLQPDIITYSTISSGLCREGRIEEAIK 453
Query: 313 LLLDMEETGLEPN 325
+++ G+ PN
Sbjct: 454 AFCKVQDMGIRPN 466
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 59/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+N+LI+GLC GR A + + C P+V+T+ L A+ L
Sbjct: 150 PDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKL 209
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
+EM ++ C PD+VT +++G+C++G + D G P+ V+ N++
Sbjct: 210 LDEMRDKG---CAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKG 266
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL----------------MDGFAWWSKGCR 165
L + E+A L+ M ++ PN T+N L +D + GC
Sbjct: 267 LCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKY--GCT 324
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
+ SYN +++ +CK + ++ A++ M+S G D +YNTL A+
Sbjct: 325 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVEL 384
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P Y T IDGL K G EA+++ + + I T + + GLC+
Sbjct: 385 LHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCR 444
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR++ A F + Q+ G+ P+ V YN ++ G CK A L M G PN
Sbjct: 445 EGRIEEAIKAFCKV-QDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPN 501
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 48/333 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
P++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L +E+
Sbjct: 219 APDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEK 278
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLS 123
+ + P+VVT +I LC+ G ++DQ G P+ ++ N +
Sbjct: 279 LMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFC 338
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K KM+ A +E+M+ P+ +YNTL+ KGC +
Sbjct: 339 KQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLI 398
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYN +I+G K E+A+ L EM+++G++ D TY+T+ G
Sbjct: 399 SYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTIS-----------------SG 441
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + G + EA+K F + + N ++ GLCK A D+F ++ N G P
Sbjct: 442 LCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSN-GCMP 500
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ TY I+I G EG ++A ++ ++ G+
Sbjct: 501 NESTYTILIEGLAYEGLVKEAREMMAELCSRGV 533
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 155/347 (44%), Gaps = 59/347 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA-------LNLFEEMVNEFG 80
+LIK LC GR EA R+ C+P+V+++N A+VA L+ +V
Sbjct: 95 ALIKKLCASGRTAEARRVLAS-----CEPDVMSYN--AMVAGYCVTGQLDNARRLVAAMP 147
Query: 81 VICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+ +PD T +I GLC G M+ +G PDVVT ++ + K ++
Sbjct: 148 M--EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQ 205
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A LL+ M + P+ TYN +++G + S GC + SYNI++
Sbjct: 206 AVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLK 265
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM-------------AINNVP-----P 218
G C EDA L EM +G + T+N L ++ +P P
Sbjct: 266 GLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTP 325
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+S Y + K + AM + + C I + N L+ LC+ G + A ++
Sbjct: 326 NSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELL 385
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
H L ++ G TP +++YN +I G K G+ ++A LL +M GL+P+
Sbjct: 386 HQL-KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPD 431
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T++++ GLC EGRI EA + F K+ PN + +
Sbjct: 411 GKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLY 470
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-QGMRPD 111
N + L A++LF MV+ C P+ T T +I+GL +G + + + M +
Sbjct: 471 NAILLGLCKRRATHSAIDLFTYMVSNG---CMPNESTYTILIEGLAYEGLVKEAREMMAE 527
Query: 112 VVTLNVMTDNLSKDGKME 129
+ + V++ L G +
Sbjct: 528 LCSRGVVSKTLVNKGAIR 545
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 161/334 (48%), Gaps = 48/334 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N VT+N LI GLC G + EA K + + P+ T+ L N + ++
Sbjct: 151 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 210
Query: 77 NEFG-VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
+E KP+VV N+IDG ++G M+ G++P+ +T + + L K
Sbjct: 211 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 270
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GCRHDVYSY 171
G+M+ A+ LL+ M++ P+T TYN +++G F S+ G +VY+Y
Sbjct: 271 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTY 330
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I+I+G C+ E A L EM ++G++ P++ VY I G
Sbjct: 331 SIMIHGLCQSGEPEKASDLLEEMTTKGLK-----------------PNAFVYAPLISGYC 373
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G V A ++F + + + N LI GL K+GR++ + F MQ GL P+
Sbjct: 374 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ-MQERGLLPNE 432
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+ +IHG+ K G + A L+ M +TGL+PN
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPN 466
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A F ++ ++ + PN +T+++L++GLC G++ A+ L K++ P+ IT+
Sbjct: 236 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 295
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + A L EM N G+ P+V T + +I GLC+ G
Sbjct: 296 NLIIEGHFRHHNKKDAFRLLSEMENA-GI--SPNVYTYSIMIHGLCQSGEPEKASDLLEE 352
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G++P+ + ++G + A + + M + +V P+ YN+L+ G +
Sbjct: 353 MTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGR 412
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + ++Y+ LI+GY K+ ++E A L + ML G++ + Y
Sbjct: 413 VEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID 472
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V D+ +Y I L +G + A +V S I +
Sbjct: 473 LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNG 532
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + + LI GLCK + A+ I M G+ P++V YN +I G CK G A
Sbjct: 533 SVPDVHVYSSLISGLCKTADREKAFGILDE-MSKKGVDPNIVCYNALIDGLCKSGDISYA 591
Query: 311 NGLLLDMEETGLEPN 325
+ + GL PN
Sbjct: 592 RNVFNSILAKGLVPN 606
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 159/369 (43%), Gaps = 69/369 (18%)
Query: 16 MSC--FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
MSC PN+V + +LI G EG EA ++ K++ PN IT++ L
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVT 114
A L ++MV + +PD +T II+G KD F M + G+ P+V T
Sbjct: 273 MDRASLLLKQMVRDSH---RPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYT 329
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-------- 166
++M L + G+ E+A+ LLE M + + PN Y L+ G+ CR
Sbjct: 330 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGY------CREGNVSLACE 383
Query: 167 ------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
D+Y YN LI G K VE++ +M G+ + TY+ L
Sbjct: 384 IFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYL 443
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + P+ +Y ++ +K+ + + F ++ + +L
Sbjct: 444 KNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNR 503
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
LI L G ++ A+ + + +N G PDV Y+ +I G CK +KA G+L +
Sbjct: 504 IYGILIHNLSSSGNMEAAFRVLSEIEKN-GSVPDVHVYSSLISGLCKTADREKAFGILDE 562
Query: 317 MEETGLEPN 325
M + G++PN
Sbjct: 563 MSKKGVDPN 571
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 130/311 (41%), Gaps = 71/311 (22%)
Query: 86 DVVTCTNIIDGLCKDG-----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
DV+ T G +D M D+G+ P + N + +L + M + E M+
Sbjct: 51 DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVG 110
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
++P+ TY+TL++ + +GC + +YN+LI G C+ VE+
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A ++M G+ D TY L M+ + P+ VY ID
Sbjct: 171 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW------------- 275
G + G EA K+ + T + L+ GLCK+G++ A
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290
Query: 276 -------------------DIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
D F +L M+N G++P+V TY+IMIHG C+ G+ +KA+ LL
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 350
Query: 315 LDMEETGLEPN 325
+M GL+PN
Sbjct: 351 EEMTTKGLKPN 361
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 161/404 (39%), Gaps = 89/404 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F LL + + +PN+ T++ +I GLC G +A+ L +++ PN + L
Sbjct: 311 AFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLIS 370
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
+A +F++M V PD+ ++I GL K G M ++G
Sbjct: 371 GYCREGNVSLACEIFDKMTK---VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERG 427
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ T + + K+G +E A L++ M+ + PN Y L++ +
Sbjct: 428 LLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVS 487
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+ +G D Y ILI+ N+E A + E+ G D Y++L
Sbjct: 488 STFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGL 547
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M+ V P+ Y IDGL K+G + A VF++I V
Sbjct: 548 CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNC 607
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM------------------ 297
T LIDG CK+G + A+ +++ ++ G+TPD Y+++
Sbjct: 608 VTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIE 666
Query: 298 ----------------IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GFCK G+ Q+ LL + GL PN
Sbjct: 667 EMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPN 710
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 143/328 (43%), Gaps = 55/328 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKL-------NVFCCDPNVITFNTLALVALNLFEEMVNEF-- 79
L+ GR+ +AA + + ++ CC N + + L A+ L + V EF
Sbjct: 53 LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCC--NALLKDLLRADAMALLWK-VREFMV 109
Query: 80 GVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
G PDV T + +I+ CK F M ++G + VT NV+ L + G +E
Sbjct: 110 GAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVE 169
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHDVYSYNILI 175
EA + M + P+ TY L++G + + +V Y LI
Sbjct: 170 EAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLI 229
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G+ ++ N ++A + +EM++ G++ + TY+ L M ++
Sbjct: 230 DGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR 289
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD+ Y I+G +++ +A ++ S + N + T + +I GLC+ G + A D+
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
M GL P+ Y +I G+C+EG
Sbjct: 350 LEE-MTTKGLKPNAFVYAPLISGYCREG 376
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 151/370 (40%), Gaps = 88/370 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN-----LFEEM 75
P++ +NSLI GL GR+ E+ + F ++ PN T++ L L E++
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 454
Query: 76 VNE-FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
V KP+ V ++++ K M+DQG+ D ++ NLS
Sbjct: 455 VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSS 514
Query: 125 DGKME-----------------------------------EANCLLEVMIQRDVNPNTCT 149
G ME +A +L+ M ++ V+PN
Sbjct: 515 SGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVC 574
Query: 150 YNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YN L+DG + +KG + +Y LI+G CK ++ +A L EML
Sbjct: 575 YNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEML 634
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA--IGNHKCVL 253
+ GI PD+ VY+ G G + +AM + + H
Sbjct: 635 ATGI-----------------TPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA--- 674
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+I + N L+DG CK G+++ + H++M GL P+ +T +I G + G+ + + +
Sbjct: 675 SISSFNNLVDGFCKRGKMQETLKLLHVIMGR-GLVPNALTIENIISGLSEAGKLSEVHTI 733
Query: 314 LLDMEETGLE 323
+++++ E
Sbjct: 734 FVELQQKTSE 743
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 144/328 (43%), Gaps = 42/328 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F +L I + P++ ++SLI GLC +A + +++ DPN++ +
Sbjct: 516 GNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCY 575
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A N+F ++ + G++ P+ VT T++IDG CK G
Sbjct: 576 NALIDGLCKSGDISYARNVFNSILAK-GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNE 632
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +V+T S G +E+A L+E M R + + ++N L+DGF K
Sbjct: 633 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGK 691
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + + +I+G + + + ++ E+ + + A +++
Sbjct: 692 MQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSS 751
Query: 209 LFMAINN---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
LFM + N +P D V I K G + +A+ + I + + ++D L
Sbjct: 752 LFMDMINQGKIPLD--VVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNL 809
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
C+ G+L A ++ + + L P +V
Sbjct: 810 CRKGKLSEALNLLKEMDKRGNLQPTLVA 837
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V +D K+G V +A +V + + +I CN L+ L + + + W +
Sbjct: 49 VLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKV-REF 107
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
M G++PDV TY+ +I +CK + A +L++M E G
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERG 147
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
+P++VT+NSLI G G + E A LF ++ C P++IT+N L A
Sbjct: 321 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFE 380
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTD 120
F EM N G+ KP+VVT + +ID CK+G M G+ P+ T + D
Sbjct: 381 YFSEMKNN-GL--KPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K G + EA LL M+Q V N TY L+DG + G
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ Y L++GY K +EDA+ + ++M I+ D Y ++
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLIL 557
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + + TT ID +K G +A+ F + + TI T LIDGLCK
Sbjct: 558 EEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKA 617
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +++A D F ++ + GL P+V Y +I G CK + A L +M+ G+ P+
Sbjct: 618 GIVELAVDYFCRML-SLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPD 673
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 43/283 (15%)
Query: 85 PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P +C ++ L K G M+ G+ P V T NVM D L K+G +E + L
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCK 180
M + ++P+ TYN+L+DG+ GC D+ +YN LIN YCK
Sbjct: 312 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 371
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+ A EM + G++ + TY+TL M + P+
Sbjct: 372 FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFT 431
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT+ ID K G + EA K+ + + L I T L+DGLCK GR+ A ++F ++
Sbjct: 432 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML 491
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G++P+ Y ++HG+ K + + A +L M E ++P+
Sbjct: 492 KD-GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 52/353 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + + LL +L + N+VT+ +L+ GLC GR++EA +F+ + PN +
Sbjct: 443 GNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVY 502
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
ALV + E + + I K M + ++PD++ +
Sbjct: 503 T--ALVHGYIKAERMEDAMKILKQ-----------------MTECNIKPDLILYGSIIWG 543
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K+EE +LE M R ++ N T++D + K G
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +Y +LI+G CK VE AV MLS G++ + Y +L
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFD 663
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + PD +T IDG K+G + EA+ + S + + L+ G + G
Sbjct: 664 EMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCG 723
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
L A F+ +++ G+ P+ V ++ + K GQ +A L +ME GL
Sbjct: 724 ELHQARKFFNEMIEK-GILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGL 775
>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 176/378 (46%), Gaps = 76/378 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA--------ARLFKKLNV------- 51
F +L +IL + P+ VT +L+KGLC + +A A+ F+ NV
Sbjct: 29 AFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLDNVSYGTLIN 88
Query: 52 ---------------FCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
+ N + + L + A +L+ EMV + PDVVT +I G
Sbjct: 89 GLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKR---IFPDVVTYNTLIYG 145
Query: 97 LC-----KDGFMMDQGMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
C +D + MR P+V + N++ D L K+G ++ +L VMI++ V P+
Sbjct: 146 FCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPD 205
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
T ++L+DG+ A G D+ SYNI+ING K + V++AV L +
Sbjct: 206 VVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFK 265
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHV------------------YTTYIDGLYKNG 234
EM + + D TY+TL + + S+V Y++ ++ L K+G
Sbjct: 266 EMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSG 325
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
A+++F+ I + + T N L+DGLCK GRLK A +IFH L+ G DV Y
Sbjct: 326 HFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLI-KGYRLDVRLY 384
Query: 295 NIMIHGFCKEGQHQKANG 312
+MI+G C+E +A G
Sbjct: 385 TVMINGLCREALFDEAYG 402
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 143/332 (43%), Gaps = 80/332 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L + + PN+ +FN LI GLC EG +
Sbjct: 149 VGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGK----------------- 191
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDG--LCKDG--------FMMDQGMRP 110
+++A+ + + + KPDVVTC+++IDG L K M G+
Sbjct: 192 ----SVLAVMIKQSV--------KPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTI 239
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------FAW--- 159
D+ + N+M + LSK ++EA L + M + + P+T TY+TL+DG + W
Sbjct: 240 DLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLI 299
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ G +V +Y+ L+N CK + + A+ + ++ +G + TYN L
Sbjct: 300 DEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNIL------- 352
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+DGL KNG + +A ++F + L + +I+GLC+ A+
Sbjct: 353 ----------VDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEAY- 401
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
G TP+ VTY I+I K +++
Sbjct: 402 ---------GCTPNAVTYEIIIRALFKNDKNK 424
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 19/237 (8%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G +PD VTL + L + ++++A + +I + + +Y TL++G +
Sbjct: 40 GYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAP 99
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D + Y+++IN CKD+ V DA L EM+ + I D TYNTL
Sbjct: 100 DQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLF 159
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + N+ P+ + IDGL K G V V + + + TC+ LIDG +
Sbjct: 160 NEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLV 219
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A IF+ + QN G+T D+ +YNIMI+G K +A L +M+ + P+
Sbjct: 220 KKANKARYIFNAMAQN-GVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPD 275
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
P++V++N+++KGLC R L +++ C PN++TFNTL L LFE +
Sbjct: 225 PDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV 284
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 285 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 344
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+ EE LL M +D + T+N L+D F +GC DV +
Sbjct: 345 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVIT 404
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING+CK+ +++AV L + M + G + P++ YT + GL
Sbjct: 405 YTTVINGFCKEGLIDEAVMLLKSMTACGCK-----------------PNTISYTIVLKGL 447
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++A + S + C L T N LI+ LCK G ++ A ++ ++ N G +PD
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN-GCSPD 506
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++Y+ +I G K G+ +A LL M G+ PN
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
TP++ + ++I G+C EG + A + ++ + PNV+ +NTL L + +EE
Sbjct: 294 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 353
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ F C D VT ++D C++G M+++G PDV+T + +
Sbjct: 354 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFC 413
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVY 169
K+G ++EA LL+ M PNT +Y ++ G W +GC +
Sbjct: 414 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI 473
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N LIN CK VE A+ L ++ML +N PD Y+T IDG
Sbjct: 474 TFNTLINFLCKKGLVEQAIELLKQML-----------------VNGCSPDLISYSTVIDG 516
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G EA+++ + + N + + L + GR+ +F + Q+ +
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI-QDTTIRS 575
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V YN +I CK G+ ++A L M +G PN
Sbjct: 576 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 141/338 (41%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LNL 71
PN T+ +++ LC GRI +A + ++ C P ++ + A + +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
E++ C DV C +++ +C G + + G PDVV+ N +
Sbjct: 180 LEDL---HARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKG 236
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + L+E M++ PN T+NTL+ GC D
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD 296
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y +I+G CK+ ++E A + M S G++ + YNTL +
Sbjct: 297 IRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTL-----------------L 339
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL E ++ + + + C L T N L+D C+ G + ++ +++ G
Sbjct: 340 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLER-GC 398
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV+TY +I+GFCKEG +A LL M G +PN
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 49/268 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K + C PN I++ T+ L L
Sbjct: 389 LLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY-TIVLKGL 447
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ ++ C + +T +I+ LCK G M+ G PD+
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK +EA LL VM+ + ++PNT Y+++ + +
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 567
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK E A+ M+S G P
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCV-----------------P 610
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+ YT I GL GFV EA ++ + +
Sbjct: 611 NESTYTILIRGLASEGFVKEAQEMLTEL 638
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 135/334 (40%), Gaps = 74/334 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V +SLI+ LC GR EAAR V+ +N +
Sbjct: 59 VRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAM------------------- 96
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVVTLNVMTDNLSKDGKMEEANCLL 135
+ G C+ G ++ R P+ T + L G++ +A +L
Sbjct: 97 ----------VAGYCRAG-QLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVL 145
Query: 136 EVMIQRDVNPNTCTYNTLMD------GFA--------WWSKGCRHDVYSYNILINGYCKD 181
+ M +R P Y+ +++ GF ++GC DV + N+++N C
Sbjct: 146 DEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQ 205
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
+V++A+ L R++ S G D +YN + M PP+ +
Sbjct: 206 GSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I L +NG +V + + H C I +IDG+CK G L++A +I + M
Sbjct: 266 NTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNR-MP 324
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ GL P+VV YN ++ G C + ++ LL +M
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ T++++I G C G + +A L+K++ V PNV+ F TL + A +L
Sbjct: 267 PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSL 326
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F MV +FGV P++ +I G CK G M++ + PDV T ++ +
Sbjct: 327 FVHMV-KFGV--DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILING 383
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + ++ EAN L + M + P++ TYN+L I+GYCK+
Sbjct: 384 LCIEDQVAEANRLFQKMKNERIFPSSATYNSL---------------------IHGYCKE 422
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E A+ LC EM + G+ + T++TL M I + PD Y
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY 482
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ID +K + EA++++S + T CL+DG K GRL +A D + Q
Sbjct: 483 TALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQ 542
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ V + +I G C+ G +A+ DM G+ P+
Sbjct: 543 QRSCW-NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPD 583
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 156/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L IL++ PN+V F +L+ G C ++ A LF + F DPN+ +
Sbjct: 283 GNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVY 342
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
N L L A+ L EM + + PDV T T +I+GLC +
Sbjct: 343 NCLIHGHCKSGNMLEAVGLLSEMES---LNLSPDVFTYTILINGLCIEDQVAEANRLFQK 399
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M ++ + P T N + K+ ME+A L M V PN T++TL+DG
Sbjct: 400 MKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRD 459
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F KG DV +Y LI+ + K+ N+++A+ L +ML GI
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIH-------- 511
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ H + +DG +K G + A+ + + CLI+GLC+
Sbjct: 512 ---------PNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQN 562
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A F M++ G+TPD+ +Y M+ G +E + L DM +TG+ PN
Sbjct: 563 GYILRASRFFSD-MRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPN 618
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 136/311 (43%), Gaps = 44/311 (14%)
Query: 58 VITFNTLALVALNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQ 106
V + + + + LFEE + + C PD C +I++GL + M+ +
Sbjct: 134 VFSLLIMEFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISR 193
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY----------NTLMDG 156
G+ PDV V+ K G + LL+ M + PN Y N + +
Sbjct: 194 GLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEA 253
Query: 157 FAWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
+ +H V Y+Y+ +I+GYCK NV A L +E+L + + + TL
Sbjct: 254 EKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDG 313
Query: 210 ---------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M V P+ +VY I G K+G +LEA+ + S + +
Sbjct: 314 FCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T LI+GLC ++ A +F M+N + P TYN +IHG+CKE ++A L
Sbjct: 374 VFTYTILINGLCIEDQVAEANRLFQK-MKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432
Query: 315 LDMEETGLEPN 325
+M +G+EPN
Sbjct: 433 SEMTASGVEPN 443
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 169/376 (44%), Gaps = 57/376 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S F +LG I+ F N+ FN L+KG C G +A LF + C P+ +++N
Sbjct: 109 KPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYN 168
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
T+ + A LF+EM G CKP+ VT + +IDG CK+G M
Sbjct: 169 TVINGLCKGKRLVEAKELFKEMK---GGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEM 225
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
G+ DV + + G +E L M++++V PN TY+ LM+ K
Sbjct: 226 EKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKW 285
Query: 163 -----------GC--RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GC R DV +Y +L +G K+ DA+ + M+ G + TYN +
Sbjct: 286 KEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAI 345
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
MA PD Y+T + GL G + EA+ + + + + +
Sbjct: 346 INGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEF 405
Query: 252 VLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ + N +I LCK RL+ A +++ +++ G ++VTYNI+I G+ G+ K
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVER-GFPSNIVTYNILIDGYLSAGKLTK 464
Query: 310 ANGLLLDMEETGLEPN 325
A L D ++G+ PN
Sbjct: 465 ALELWKDAVDSGISPN 480
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 157/360 (43%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVA 68
C P+ V++N++I GLC R++EA LFK++ C PN +TF+ L
Sbjct: 159 CLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEG 218
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L EEM + G+ + DV + +I G C G M+ + + P+VVT + +
Sbjct: 219 FGLLEEM-EKMGL--EGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCL 275
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
+ L K K +EA +L+ M V P+ Y L DG + +G
Sbjct: 276 MNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGE 335
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
+ +YN +ING CK+ V+DA+ + M +G + D TY+TL +
Sbjct: 336 EPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVD 395
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
++ PD + I L K + A +V+ + I T N LIDG
Sbjct: 396 LLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDG 455
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G+L A +++ + + G++P+ TY ++I+G CK A GL +G P
Sbjct: 456 YLSAGKLTKALELWKDAV-DSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRP 514
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 160/360 (44%), Gaps = 51/360 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF LL + ++ +++LI G C++G I LF ++ PNV+T+
Sbjct: 213 GDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTY 272
Query: 62 NTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDG----------FMMD 105
+ L AL ++E G +PDVV T + DGL K+G M+
Sbjct: 273 SCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVK 332
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G P+ VT N + + L K+G++++A +LE M ++ P+ TY+TL+ G K
Sbjct: 333 RGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDE 392
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ DV+++N++I CK R + A + M+ G ++ TYN L
Sbjct: 393 AVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNIL 452
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+ + P++ YT I+GL K + A +F+
Sbjct: 453 IDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGT 512
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T+ N L+ LC+ ++ A ++F M+N PDVV++NI+I G K G + A
Sbjct: 513 RPTVSEYNTLMASLCRESSVEQARNLFQE-MRNANHDPDVVSFNIIIDGTLKAGDVESAK 571
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 159/354 (44%), Gaps = 58/354 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRAS +L ++ PN VT+N++I GLC EGR+ +A + + + P+V+T+
Sbjct: 318 GRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTY 377
Query: 62 NTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
+TL A+ LNL M EF + KPDV +I LCK
Sbjct: 378 STLVKGLCGVGKIDEAVDLLNLL--MSKEFHI--KPDVFAFNLVIQELCKQRRLRHAKRV 433
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M+++G ++VT N++ D GK+ +A L + + ++PN TY L++G
Sbjct: 434 YYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCK 493
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ G R V YN L+ C++ +VE A +L +EM + D +
Sbjct: 494 MQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVS 553
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+N + IDG K G V A ++ + N V T + LI+
Sbjct: 554 FNII-----------------IDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRF 596
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
K+G+L A ++ M + G PD V ++ ++ G+ +G+ +K +L M +
Sbjct: 597 LKLGQLDEAASLYER-MVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMAD 649
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 91/272 (33%), Gaps = 78/272 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L + S +PN T+ LI GLC + A LF K P V +
Sbjct: 460 GKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEY 519
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
NTL A NLF+EM N PDVV+ IIDG K G
Sbjct: 520 NTLMASLCRESSVEQARNLFQEMRNANH---DPDVVSFNIIIDGTLKAGDVESAKELLLE 576
Query: 102 ----------------------------------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
M+ G PD V + + S GK
Sbjct: 577 MLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGK 636
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
E+ +L+ M +DV ++ +T++ S KD ++E
Sbjct: 637 TEKVVSMLQQMADKDVVLDSKLTSTILACLCNMS------------------KDVDIEKI 678
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+ + S G + N L M +N V PD
Sbjct: 679 LPKFSQHTSVGA---SIKCNELLMKLNKVHPD 707
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 161/360 (44%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVA 68
CF P+ VT+++LI C GR A +L ++ P + L A A
Sbjct: 193 CF-PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGA 251
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM +++ C+PDV T T +I GL K G M +G RPD V +N M
Sbjct: 252 LSLFEEMRHQY---CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNM 308
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++++A L + M P+ TYNT++ +W+ + G
Sbjct: 309 INFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 368
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------- 216
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 369 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 428
Query: 217 -----------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ VY I L K G + +A+ +F + C + N L+ GL
Sbjct: 429 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 488
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G L A MQ G PD+ +YNI+++G K G +A +L +M+++ + P+
Sbjct: 489 ARTGMLDEALSTMRR-MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 547
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 125/352 (35%), Gaps = 90/352 (25%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A G L + P++ T+ LI+GL GRI EA F ++ C P+ + N
Sbjct: 248 AHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNN 307
Query: 64 LALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------M 103
+ A+ LF+EM + C P VVT II L + M
Sbjct: 308 MINFLGKAGRLDDAMKLFQEMET---LRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 364
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+ G+ P T +++ D K +ME+A LLE M ++ P Y +L+D +
Sbjct: 365 KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRY 424
Query: 163 ------------------------------------------------GCRHDVYSYNIL 174
GC DVY+YN L
Sbjct: 425 DLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNAL 484
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
++G + +++A+S R M G D +YN + M + V
Sbjct: 485 MSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTV 544
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD Y T + L G EA K+ + + T + +++ + K+
Sbjct: 545 RPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV 596
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 46/241 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF++L C + +
Sbjct: 388 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 447
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A+N+F+EM N+ G C PDV ++ GL + G M
Sbjct: 448 VMIKHLGKAGRLDDAINMFDEM-NKLG--CAPDVYAYNALMSGLARTGMLDEALSTMRRM 504
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G PD+ + N++ + L+K G A +L M Q V P
Sbjct: 505 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP------------------ 546
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
DV SYN ++ E+A L +EM + G D TY+++ AI V H Y
Sbjct: 547 ---DVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKV---DHEY 600
Query: 224 T 224
T
Sbjct: 601 T 601
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 18/186 (9%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
R+V N M F W +K HD +Y LI +C + V + +M+ E
Sbjct: 61 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALI--HCLE--VVEQYGEMWKMIQEM 116
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+R I V P + + L V +A+ +F I KC +
Sbjct: 117 VRN----------PICVVTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAY 164
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L G+ + +++ + PD VTY+ +I FCK G+ A LL +M+
Sbjct: 165 NSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMK 224
Query: 319 ETGLEP 324
E G++P
Sbjct: 225 EIGMQP 230
>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
Length = 933
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 176/355 (49%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLALVA-----LNLF 72
++VT ++L+ GLC +GR EA LF++++ PN +T+ ++LA L+L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLL 332
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EMV+ GV+ D+VT T ++D L K G F + + P+ VT V+ D L
Sbjct: 333 GEMVSR-GVVM--DLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDAL 389
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDV 168
K ++EA +L M ++ ++PN T++++++GF +G +V
Sbjct: 390 CKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNV 449
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAINNV 216
+Y LI+G+ K + + A+ + +ML EG++ + ++L MA+
Sbjct: 450 VTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKD 509
Query: 217 PPDS-----HV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
S HV YTT IDGL+K G + A K + + + N I+ LC +G+
Sbjct: 510 ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGK 569
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A F M+N GL PD TYN MI C++G+ KA LL +M+ + ++PN
Sbjct: 570 FKEAKS-FLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPN 623
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 159/393 (40%), Gaps = 96/393 (24%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
++V +N+L+ G C G++ A + + DPNV T+ + A +L+
Sbjct: 203 DVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLY 262
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVTLNVMTDNL 122
E MV GV+ DVVT + ++ GLC+DG MD+ G P+ VT + D+L
Sbjct: 263 EGMVRN-GVLL--DVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSL 319
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV-------------- 168
+K G+ +E LL M+ R V + TY LMD W K + D
Sbjct: 320 AKAGRGKELLSLLGEMVSRGVVMDLVTYTALMD---WLGKQGKTDEVKDTLRFALSDNLS 376
Query: 169 ---YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+Y +LI+ CK NV++A + EM + I + T++++
Sbjct: 377 PNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEY 436
Query: 211 ---MAINNVPPDSHVYTTYIDGLYK----------------------------------- 232
M + P+ Y T IDG +K
Sbjct: 437 KRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQ 496
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
NG + EAM +F L LIDGL K G + A+ LM + PD V
Sbjct: 497 NGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDR-NMLPDAV 555
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN+ I+ C G+ ++A L +M GL+P+
Sbjct: 556 VYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPD 588
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 141/342 (41%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ T+N++I C +G +A +L ++ + PN+IT+NTL A L
Sbjct: 587 PDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYL 646
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EMV+ P +T ++ + +MM+ G+ D+ N +
Sbjct: 647 LNEMVS---AGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQV 703
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L G +A +LE M+ + P+T T+N LI G+CK
Sbjct: 704 LCYHGMTRKATVVLEEMLGSGIAPDTITFNA---------------------LILGHCKS 742
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVY 223
++++A + +ML + I + T+NTL + +V P++ Y
Sbjct: 743 SHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTY 802
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
G K +EAM+++ + V + T N LI K G + A ++F MQ
Sbjct: 803 DILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKD-MQ 861
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P TY+I++ G+ + + L DM+E G P+
Sbjct: 862 KRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPS 903
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 157/409 (38%), Gaps = 120/409 (29%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVA 68
+PN+VTF+S+I G G + +A + + +PNV+T+ TL A
Sbjct: 409 SISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAA 468
Query: 69 LNLFEEM------VNEF--------------------------GVICKPDVVTCTNIIDG 96
L ++ +M VN+F G D V T +IDG
Sbjct: 469 LEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDG 528
Query: 97 LCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANC------------- 133
L K G M MD+ M PD V NV + L GK +EA
Sbjct: 529 LFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPD 588
Query: 134 ----------------------LLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
LL M + PN TYNTL+ G
Sbjct: 589 QSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLN 648
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S G ++ ++ + R ++ + + M++ G+ AD T YNTL +
Sbjct: 649 EMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVL---- 704
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
Y K VLE M +G+ TI T N LI G CK L A+
Sbjct: 705 -------CYHGMTRKATVVLEEM-----LGSGIAPDTI-TFNALILGHCKSSHLDNAFAT 751
Query: 278 F-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ML QN ++P++ T+N ++ G G+ +A +L++ME++GLEPN
Sbjct: 752 YAQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 132/316 (41%), Gaps = 52/316 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
VT N+L+ GLC G++ AA L + P + + TL+L+ + F + V
Sbjct: 136 VTVNTLLAGLCRNGQVDAAAALADRAGGIT--PWMSSAGTLSLLDIAGFGDTPAALSVAD 193
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+ M QG+ DVV N + + G+++ A +L++M + V
Sbjct: 194 R------------------MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGV 235
Query: 144 NPNTCTYNTLM----------DGFAWWSKGCRH----DVYSYNILINGYCKDRNVEDAVS 189
+PN TY + + F + R+ DV + + L+ G C+D +A +
Sbjct: 236 DPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYA 295
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L REM G P+ Y T ID L K G E + + + +
Sbjct: 296 LFREMDKVG-----------------AAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSR 338
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V+ + T L+D L K G+ D + + L+P+ VTY ++I CK +
Sbjct: 339 GVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD-NLSPNGVTYTVLIDALCKAHNVDE 397
Query: 310 ANGLLLDMEETGLEPN 325
A +LL+MEE + PN
Sbjct: 398 AEQVLLEMEEKSISPN 413
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 140/351 (39%), Gaps = 58/351 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL + MS PN++T+N+L+ GL G + +A L ++ P+ +T
Sbjct: 603 GETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ V L++ E M+N D+ ++ LC G
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAG---LHADITVYNTLLQVLCYHGMTRKATVVLEE 719
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +T N + K ++ A M+ ++++PN T+NTL+ G +
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGR 779
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + +Y+IL G+ K N +A+ L EM+ +G +TYN
Sbjct: 780 IGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNA 839
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I K G + +A ++F + T T + L+ G
Sbjct: 840 L-----------------ISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS-- 880
Query: 269 GRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ ++ L M+ G +P T + + F K G +A LL ++
Sbjct: 881 -RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
D S N L+ +C+ R + A++L R R YN L A+++
Sbjct: 72 DPASLNALLYSHCRLRLLRPAIALLRSS-----RPTTVAYNILLAALSDHAHAPAVLAEM 126
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
VP D T + GL +NG V A + G ++ L+D + G
Sbjct: 127 CKRGVPFDGVTVNTLLAGLCRNGQVDAAAALADRAGGITPWMSSAGTLSLLD-IAGFGDT 185
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M GL DVV YN ++ GFC+ GQ A G+L M+E G++PN
Sbjct: 186 PAALSVADR-MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPN 238
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 177/409 (43%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A L+ ++ P +VT+NS++KGLC G +A +FK+++ F P+V +F
Sbjct: 144 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 203
Query: 62 NTLA---------LVALNLFEEMVNE---------------------------------- 78
L AL +++EM +
Sbjct: 204 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 263
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
FG++ PD V T +I G C+ G M D G PDVVT N + + L K+ ++
Sbjct: 264 FGLV--PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 321
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+A LL M +R V P+ CT+ TL+ G+ ++ R D+ +YN L
Sbjct: 322 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 381
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+G C+ +++ A L +M S I + TY+ L M +
Sbjct: 382 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 441
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y + I G ++G V + K + +K + T N LI G K ++ A+
Sbjct: 442 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 501
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +M M+ + PDVVTYN++I+GF G Q+A + M G+EP+
Sbjct: 502 LLNM-MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 549
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 122/283 (43%), Gaps = 68/283 (24%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK---- 162
PDVVT NVM D + G E A L++ M+ + + P TYN+++ G W K
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
G DV S+ ILI G+C+ +E+A+ + +EM GI+ D +++ L
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + PD +YT I G + G + +A++V + C+ + T
Sbjct: 248 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 307
Query: 258 CNCLIDGLCKI-----------------------------------GRLKIAWDIFHMLM 282
N L++GLCK G+L A +F ++
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N L PD+VTYN +I G C++G KAN L DM + PN
Sbjct: 368 -NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPN 409
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 36/247 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +L P++VT+N+LI G+C +G + +A L+ ++ PN +T+
Sbjct: 354 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 413
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A +EM+N+ G++ P+++T +II G C+ G
Sbjct: 414 SILIDSHCEKGQVEDAFGFLDEMINK-GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQK 470
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM + PD++T N + K+ KM +A LL +M + V P+ TYN L++GF
Sbjct: 471 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGN 530
Query: 158 ---AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A W +KG D Y+Y +ING+ N ++A L EML G
Sbjct: 531 VQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTV 590
Query: 209 LFMAINN 215
F+ I N
Sbjct: 591 QFVNIQN 597
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+S + Y+ NI+++ YCK + ++ EM + D T+N +
Sbjct: 87 FSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM---------- 136
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+D ++ G AM + ++ + I T N ++ GLC+ G AW++F
Sbjct: 137 -------VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFK 189
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+ PDV ++ I+I GFC+ G+ ++A + +M G++P+
Sbjct: 190 E-MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 234
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 177/409 (43%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A L+ ++ P +VT+NS++KGLC G +A +FK+++ F P+V +F
Sbjct: 205 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSF 264
Query: 62 NTL---------ALVALNLFEEMVNE---------------------------------- 78
L AL +++EM +
Sbjct: 265 TILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC 324
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
FG++ PD V T +I G C+ G M D G PDVVT N + + L K+ ++
Sbjct: 325 FGLV--PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 382
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+A LL M +R V P+ CT+ TL+ G+ ++ R D+ +YN L
Sbjct: 383 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 442
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+G C+ +++ A L +M S I + TY+ L M +
Sbjct: 443 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 502
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y + I G ++G V + K + +K + T N LI G K ++ A+
Sbjct: 503 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 562
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +M M+ + PDVVTYN++I+GF G Q+A + M G+EP+
Sbjct: 563 LLNM-MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 610
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 159/349 (45%), Gaps = 64/349 (18%)
Query: 16 MSCF--TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
M CF P+ V + +I G C G + +A R+ ++ C P+V+T+NTL
Sbjct: 322 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 381
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
L A L EM E GV PD+ T T +I G C +G M++Q +RPD+VT
Sbjct: 382 LLDAEGLLNEM-RERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 438
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D + + G +++AN L + M R++ PN T Y+IL
Sbjct: 439 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT---------------------YSIL 477
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+ +C+ VEDA EM+++GI + TYN++ M +N V
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y T I G K + +A K+ + + K + T N LI+G G ++ A
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 597
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF M G+ PD TY MI+G G ++A L +M + G P+
Sbjct: 598 IFEK-MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 161/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N T N ++ C + + ++ C P+V+T N + A A+ L
Sbjct: 155 NTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALV 214
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+ MV++ KP +VT +++ GLC+ G M D G+ PDV + ++
Sbjct: 215 DSMVSKG---LKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGF 271
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
+ G++EEA + + M R + P+ +++ L+ FA K G D
Sbjct: 272 CRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 331
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
Y ++I G+C+ + DA+ + EM+ G D TYNTL
Sbjct: 332 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 391
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M VPPD +TT I G G + +A+++F + N + I T N LIDG+C+ G
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D++ M + + P+ VTY+I+I C++GQ + A G L +M G+ PN
Sbjct: 452 LDKANDLWDD-MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 505
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 40/201 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++ PN++T+NS+IKG C G + + + +K+ V P++IT+
Sbjct: 485 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 544
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL + ++M + F ++ M + ++PDVVT N++ +
Sbjct: 545 NTLIHGYIKE-DKMHDAFKLL------------------NMMEKEKVQPDVVTYNMLING 585
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
S G ++EA + E M + + P D Y+Y +ING+
Sbjct: 586 FSVHGNVQEAGWIFEKMCAKGIEP---------------------DRYTYMSMINGHVTA 624
Query: 182 RNVEDAVSLCREMLSEGIRAD 202
N ++A L EML G D
Sbjct: 625 GNSKEAFQLHDEMLQRGFAPD 645
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+S + Y+ NI+++ YCK + ++ EM + D T+N +
Sbjct: 148 FSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVM---------- 197
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+D ++ G AM + ++ + I T N ++ GLC+ G AW++F
Sbjct: 198 -------VDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFK 250
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+ PDV ++ I+I GFC+ G+ ++A + +M G++P+
Sbjct: 251 E-MDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 295
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F ++VT+N LI GLC R+ EA + + L +V+T+ TL L +
Sbjct: 256 FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGI 315
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
L +EMV E G P + ++DGL K G + D G P++ N +
Sbjct: 316 QLMDEMV-ELGF--SPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALI 372
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCR 165
++L K G +++A L M ++ PN TY+ L+D F +++ + G
Sbjct: 373 NSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIG 432
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
VY+YN LING CK ++ A SL EM ++G+ ATT+ +L
Sbjct: 433 ETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKL 492
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M N + P+ + +T I GL + EA ++F + K T T N LI+G C+
Sbjct: 493 YNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCR 552
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A+++ + Q GL PD TY +I G C G+ KA + D+ + ++ N
Sbjct: 553 DGKIDKAFELLEDMHQK-GLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLN 609
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 56/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F L +++ + TPN+ TF +LI GLC+ ++ EA+ LF +L P +T+N
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD- 105
L A L E+M ++ G++ PD T +I GLC G F+ D
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDM-HQKGLV--PDTYTYRPLISGLCSTGRVSKAKDFIDDL 601
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
Q ++ + + + + ++G++ EA MIQR +N + + L+DG
Sbjct: 602 HKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDR 661
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+G R D Y +I+ Y K+ + + A M++E + TY L
Sbjct: 662 KTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTAL 721
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M NVPP+S Y ++D L K G + EA+ + A+
Sbjct: 722 MNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLL 781
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T+ T N +I G CK+GR A + + +N G+ PD VTY+ +I+ +C+ G +
Sbjct: 782 ANTV-THNIIIRGFCKLGRFHEATKVLSEMTEN-GIFPDCVTYSTLIYEYCRSGNVGASV 839
Query: 312 GLLLDMEETGLEPN 325
L M GLEP+
Sbjct: 840 KLWDTMLNRGLEPD 853
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 108/477 (22%), Positives = 181/477 (37%), Gaps = 155/477 (32%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L+ ++ F PN+ +N+LI LC G + +A L+ +++ PN IT+
Sbjct: 344 GKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITY 403
Query: 62 NTLA---------LVALNLFEEMVNE------------------FGVIC----------- 83
+ L VA++ F+ M+ + FG +
Sbjct: 404 SILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTN 463
Query: 84 ---KPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+P T T++I G CKD M+D G+ P+V T + L KM E
Sbjct: 464 KGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAE 523
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILI- 175
A+ L + +++R + P TYN L++G+ KG D Y+Y LI
Sbjct: 524 ASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLIS 583
Query: 176 ----------------------------------NGYCKDRNVEDAVSLCREMLSEGIRA 201
+GYC++ + +A+S EM+ GI
Sbjct: 584 GLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINM 643
Query: 202 DATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D + L M + PD+ +YT+ ID K G +A + +
Sbjct: 644 DLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECW 703
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGR--------------------------------- 270
+ +C + T L++GLCK G
Sbjct: 704 DLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKE 763
Query: 271 --LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+K A + H +++ GL + VT+NI+I GFCK G+ +A +L +M E G+ P+
Sbjct: 764 GNMKEAIGLHHAMLK--GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 147/365 (40%), Gaps = 67/365 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68
C + + FN L++ RI +A + K + P V T + L +
Sbjct: 150 CKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITV 209
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLC----------KDGFMMDQGMRPDVVTLNVM 118
LF+E VN GV +PD TC+ ++ +C K +M G +VT NV+
Sbjct: 210 WELFDESVNA-GV--RPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVL 266
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI----- 173
L K ++ EA + + + + + TY TL+ GF CR + I
Sbjct: 267 IHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGF------CRLQQFEAGIQLMDE 320
Query: 174 ---------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
L++G K ++DA L ++ G + YN L
Sbjct: 321 MVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGD 380
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M++ N+ P+ Y+ ID ++G + A+ F + T+ N
Sbjct: 381 LDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNS 440
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI+G CK G L A +F + M N G+ P T+ +I G+CK+ Q QKA L M +
Sbjct: 441 LINGQCKFGDLSAAESLF-IEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDN 499
Query: 321 GLEPN 325
G+ PN
Sbjct: 500 GITPN 504
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 25/240 (10%)
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ + M + +M L AN LL ++ R+ +P C ++ +D + K
Sbjct: 95 LHKNMNHSTTSYAIMVHALVHSRLFWPANSLLHTLLLRESHPK-CVFSHFLDSY----KR 149
Query: 164 CR-HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------- 213
C+ +N+L+ Y + DAV + + M + + + T + L +
Sbjct: 150 CKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITV 209
Query: 214 ---------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
V PD + + + + + L A + + + L+I T N LI G
Sbjct: 210 WELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHG 269
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK R+ A ++ L GL DVVTY ++ GFC+ Q + L+ +M E G P
Sbjct: 270 LCKGDRVSEAVEVKRSL-GGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSP 328
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 51/315 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
T+ +++KG+C+ G + A + K++ C PNV+ + TL L + FG
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ-----NSRFG---- 469
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
D + M +QG+ PD+ N + LSK +M+EA L M++ +
Sbjct: 470 ----------DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNI--------------LINGYCKDRNVEDAVSL 190
PN TY + G+ S+ D Y + LIN YCK V +A S
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
R M+ +GI DA TY L ++GL+KN V +A ++F +
Sbjct: 580 YRSMVDQGILGDAKTYTVL-----------------MNGLFKNDKVDDAEEIFREMRGKG 622
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + LI+G K+G ++ A IF +++ GLTP+V+ YN+++ GFC+ G+ +KA
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 311 NGLLLDMEETGLEPN 325
LL +M GL PN
Sbjct: 682 KELLDEMSVKGLHPN 696
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + ++ ++ S PN+V + +LIK R +A R+ K++ P++ +
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490
Query: 62 NTLAL---------VALNLFEEMV---------------------NEFGVICK------- 84
N+L + A + EMV +EF K
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P+ V CT +I+ CK G M+DQG+ D T V+ + L K+ K+++
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILIN 176
A + M + + P+ +Y L++GF+ +G +V YN+L+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+C+ +E A L EM +G+ +A TY T+ M + + P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS VYTT +DG + V A+ +F C + N LI+ + K G+ ++ ++
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVL 789
Query: 279 HMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ LM + P+ VTYNIMI CKEG + A L M+ L P
Sbjct: 790 NRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 163/414 (39%), Gaps = 126/414 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
P++ +NSLI GL R+ EA ++ PN T+ + +
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK 543
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+ + + E GV+ P+ V CT +I+ CK G M+DQG+ D T V+ +
Sbjct: 544 YVKEMRECGVL--PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K+ K+++A + M + + P+ +Y L++GF+ +G +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V YN+L+ G+C+ +E A L EM +G+ +A TY T+
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------------SAIGN-----HK 250
M + + PDS VYTT +DG + V A+ +F +A+ N K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781
Query: 251 CVLTIETCNCLIDG-------------------LCKIGRLKIAWDIFHMLMQNPGLTPDV 291
L E N L+DG LCK G L+ A ++FH MQN L P V
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTV 840
Query: 292 VTY-----------------------------------NIMIHGFCKEGQHQKA 310
+TY +++I+ F KEG KA
Sbjct: 841 ITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 62/325 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
TPN++ +N L+ G C G I +A L +++V PN +T+ T+ A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM---------DQGMRPDVVTLNVMTD 120
LF+EM + G++ PD T ++DG C+ + +G N + +
Sbjct: 718 RLFDEMKLK-GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ K GK E T N LMDG ++ G +DV +YNI+I+ CK
Sbjct: 775 WVFKFGKTE---------------LKTEVLNRLMDG-SFDRFGKPNDV-TYNIMIDYLCK 817
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHV 222
+ N+E A L +M + + TY +L + + PD +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 223 YTTYIDGLYKNGFVLEAM----KVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
Y+ I+ K G +A+ ++F+ + C L+I TC L+ G K+G +++A +
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFC 302
+++ + PD T +I+ C
Sbjct: 938 MENMVRLQYI-PDSATVIELINESC 961
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 117/305 (38%), Gaps = 69/305 (22%)
Query: 89 TCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
T T +DG K M+ +G+ P T +V+ D L K ++E+A LL M V+ +
Sbjct: 253 TATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDN 312
Query: 148 CTYNTLMDGF-----AWWSKGCRHDVYSYNI----------------------------- 173
TY+ L+DG A +KG H++ S+ I
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 174 ---------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
LI GYC+++NV L EM I TY T+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + P+ +YTT I +N +AM+V + I N
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K R+ A +++N GL P+ TY I G+ + + A+ + +M E
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 321 GLEPN 325
G+ PN
Sbjct: 552 GVLPN 556
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 151 NTLMDGFAW--WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ L+ F W K + S++ L C + E A+S+ M+ A +++
Sbjct: 78 SKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPV-AEVWSS 136
Query: 209 LFMAINNV---PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ D ++ DG G++ EA+ VFS+ + V + C L+D L
Sbjct: 137 IVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDAL 196
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ RL + WD++ +++ + DV TY+++I C+ G Q +L E+
Sbjct: 197 LRWNRLDLFWDVYKGMVER-NVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 114/310 (36%), Gaps = 67/310 (21%)
Query: 68 ALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
AL++ E M+ + + +V C+ G DG V ++ D
Sbjct: 116 ALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG-----------VLFGILFDGYIAK 164
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
G +EEA + + ++ P L+D W + DV +Y
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224
Query: 172 NILINGYCKDRNVE---------------------DAVSLCREMLSEGIRADATTYNTLF 210
++LI +C+ NV+ A+ L M+ +G+ TY+ L
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M V D+H Y+ IDGL K A + + +H
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ +C I + K G ++ A +F ++ + GL P Y +I G+C+E ++
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIAS-GLIPQAQAYASLIEGYCREKNVRQGYE 403
Query: 313 LLLDMEETGL 322
LL++M++ +
Sbjct: 404 LLVEMKKRNI 413
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 51/315 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
T+ +++KG+C+ G + A + K++ C PNV+ + TL L + FG
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ-----NSRFG---- 469
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
D + M +QG+ PD+ N + LSK +M+EA L M++ +
Sbjct: 470 ----------DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNI--------------LINGYCKDRNVEDAVSL 190
PN TY + G+ S+ D Y + LIN YCK V +A S
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
R M+ +GI DA TY L ++GL+KN V +A ++F +
Sbjct: 580 YRSMVDQGILGDAKTYTVL-----------------MNGLFKNDKVDDAEEIFREMRGKG 622
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + LI+G K+G ++ A IF +++ GLTP+V+ YN+++ GFC+ G+ +KA
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 311 NGLLLDMEETGLEPN 325
LL +M GL PN
Sbjct: 682 KELLDEMSVKGLHPN 696
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + ++ ++ S PN+V + +LIK R +A R+ K++ P++ +
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490
Query: 62 NTLAL---------VALNLFEEMV---------------------NEFGVICK------- 84
N+L + A + EMV +EF K
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P+ V CT +I+ CK G M+DQG+ D T V+ + L K+ K+++
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILIN 176
A + M + + P+ +Y L++GF+ +G +V YN+L+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+C+ +E A L EM +G+ +A TY T+ M + + P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS VYTT +DG + V A+ +F C + N LI+ + K G+ ++ ++
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVL 789
Query: 279 HMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ LM + P+ VTYNIMI CKEG + A L M+ L P
Sbjct: 790 NRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 163/414 (39%), Gaps = 126/414 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
P++ +NSLI GL R+ EA ++ PN T+ + +
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK 543
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+ + + E GV+ P+ V CT +I+ CK G M+DQG+ D T V+ +
Sbjct: 544 YVKEMRECGVL--PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K+ K+++A + M + + P+ +Y L++GF+ +G +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V YN+L+ G+C+ +E A L EM +G+ +A TY T+
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------------SAIGN-----HK 250
M + + PDS VYTT +DG + V A+ +F +A+ N K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781
Query: 251 CVLTIETCNCLIDG-------------------LCKIGRLKIAWDIFHMLMQNPGLTPDV 291
L E N L+DG LCK G L+ A ++FH MQN L P V
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTV 840
Query: 292 VTY-----------------------------------NIMIHGFCKEGQHQKA 310
+TY +++I+ F KEG KA
Sbjct: 841 ITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 62/325 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
TPN++ +N L+ G C G I +A L +++V PN +T+ T+ A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM---------DQGMRPDVVTLNVMTD 120
LF+EM + G++ PD T ++DG C+ + +G N + +
Sbjct: 718 RLFDEMKLK-GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ K GK E T N LMDG ++ G +DV +YNI+I+ CK
Sbjct: 775 WVFKFGKTE---------------LKTEVLNRLMDG-SFDRFGKPNDV-TYNIMIDYLCK 817
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHV 222
+ N+E A L +M + + TY +L + + PD +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 223 YTTYIDGLYKNGFVLEAM----KVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
Y+ I+ K G +A+ ++F+ + C L+I TC L+ G K+G +++A +
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFC 302
+++ + PD T +I+ C
Sbjct: 938 MENMVRLQYI-PDSATVIELINESC 961
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 117/305 (38%), Gaps = 69/305 (22%)
Query: 89 TCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
T T +DG K M+ +G+ P T +V+ D L K ++E+A LL M V+ +
Sbjct: 253 TATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDN 312
Query: 148 CTYNTLMDGF-----AWWSKGCRHDVYSYNI----------------------------- 173
TY+ L+DG A +KG H++ S+ I
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 174 ---------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
LI GYC+++NV L EM I TY T+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + P+ +YTT I +N +AM+V + I N
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K R+ A +++N GL P+ TY I G+ + + A+ + +M E
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 321 GLEPN 325
G+ PN
Sbjct: 552 GVLPN 556
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 151 NTLMDGFAW--WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ L+ F W K + S++ L C + E A+S+ M+ A +++
Sbjct: 78 SKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPV-AEVWSS 136
Query: 209 LFMAINNV---PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ D ++ DG ++ EA+ VFS+ + V + C L+D L
Sbjct: 137 IVRCSQEFVGKSDDGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDAL 196
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ RL + WD++ +++ + DV TY+++I C+ G Q +L E+
Sbjct: 197 LRWNRLDLFWDVYKGMVER-NVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 113/310 (36%), Gaps = 67/310 (21%)
Query: 68 ALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
AL++ E M+ + + +V C+ G DG V ++ D
Sbjct: 116 ALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG-----------VLFGILFDGYIAK 164
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
+EEA + + ++ P L+D W + DV +Y
Sbjct: 165 EYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224
Query: 172 NILINGYCKDRNVE---------------------DAVSLCREMLSEGIRADATTYNTLF 210
++LI +C+ NV+ A+ L M+ +G+ TY+ L
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M V D+H Y+ IDGL K A + + +H
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ +C I + K G ++ A +F ++ + GL P Y +I G+C+E ++
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIAS-GLIPQAQAYASLIEGYCREKNVRQGYE 403
Query: 313 LLLDMEETGL 322
LL++M++ +
Sbjct: 404 LLVEMKKRNI 413
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 173/359 (48%), Gaps = 59/359 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++V + ++I EG + +A LFK++ P+++T++++ A
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+MVN+ GV+ PD T N+I G G M + PDVVTLN++
Sbjct: 280 FLRQMVNK-GVL--PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMG 336
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC---------------- 164
+L K GK++EA + + M + NP+ +Y +++G+A +KGC
Sbjct: 337 SLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYA--TKGCLVDMTDLFDLMLGDGI 394
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
D+Y++++LI Y ++ A+ + EM G++ D TY T+ A+
Sbjct: 395 APDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAME 454
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
V PD + Y I G +G +L+A ++ I N+ L I + +I+ LC
Sbjct: 455 KFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLC 514
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+GR+ A +IF + + N G PD V Y++++ G+C G+ +KA + M G+EPN
Sbjct: 515 KLGRIMDAQNIFDLTV-NVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 572
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 164/373 (43%), Gaps = 54/373 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G++L + +++ N L+KG C R EA L + C P+V ++
Sbjct: 130 RPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSY 189
Query: 62 NTLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L L +L + M+ E G +C PDVV T +ID K+G
Sbjct: 190 SIL-LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKE 248
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PD+VT + + L K M +A L M+ + V P+ TYN L+ G++
Sbjct: 249 MVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQ 308
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W + R DV + N+L+ CK +++A + M +G D +Y
Sbjct: 309 WKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKI 368
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + + PD + ++ I G + +AM +F+ + +H
Sbjct: 369 MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHG 428
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I LC+IG++ A + F+ ++ + G+ PD Y+ +I GFC G KA
Sbjct: 429 VKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKA 487
Query: 311 NGLLLDMEETGLE 323
L+L++ G+
Sbjct: 488 KELILEIMNNGMR 500
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 165/373 (44%), Gaps = 52/373 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+A L +++ P+ T+N+LI G + G+ EA R+FK++ P+V+T
Sbjct: 274 MGKAEA---FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVT 330
Query: 61 FNTL--ALVALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDG----------FMM 104
N L +L +E + F + PDV + +++G G M+
Sbjct: 331 LNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLML 390
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
G+ PD+ T +V+ + G +++A + M V P+ TY T++ K
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMD 450
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G D Y+Y+ LI G+C ++ A L E+++ G+R D ++++
Sbjct: 451 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSII 510
Query: 211 ---------MAINNV---------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N+ PD+ VY+ +DG G + +A++VF A+ +
Sbjct: 511 NNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 570
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ L++G CKIGR+ +F ++Q G+ P + YNI+I G G+ A
Sbjct: 571 PNVVVYGTLVNGYCKIGRIDEGLSLFREMLQK-GIKPSTILYNIIIDGLFVAGRTVPAKV 629
Query: 313 LLLDMEETGLEPN 325
+M E+G+ N
Sbjct: 630 KFHEMTESGIAIN 642
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 148/325 (45%), Gaps = 55/325 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++ TF+ LIK G + +A +F ++ P+V+T+ T+ A+
Sbjct: 395 APDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAME 454
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTD 120
F +M+++ GV PD +I G C G + M+ GMR D+V + + +
Sbjct: 455 KFNQMIDQ-GV--APDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIIN 511
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
NL K G++ +A + ++ + +P+ Y+ LMDG+ A S G
Sbjct: 512 NLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEP 571
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH- 221
+V Y L+NGYCK +++ +SL REML +GI+ YN LF+A VP
Sbjct: 572 NVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKF 631
Query: 222 -------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
Y + G +KN EA+ +F + + I T N +I G+ +
Sbjct: 632 HEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQT 691
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVT 293
R++ A D+F + ++ GL P VVT
Sbjct: 692 RRVEEAKDLFASISRS-GLVPCVVT 715
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+ P SH Y +D + A+ F + + I N L+ G C+ R A
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DI G PDV +Y+I++ C +G+ +A+ LL M E G
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGG 216
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 167/356 (46%), Gaps = 54/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE----- 73
P++ + ++ C +G++ EAA KK+ +PN++T+++L V+L E
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283
Query: 74 -EMVNEFGVICKPDVVTCTNIIDGLCKD-----------GFMMDQGMRPDVVTLNVMTDN 121
+ ++E GV +VVT T +I G CK G + + PD V+ D
Sbjct: 284 LKFMSEKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
+ GK+++A LL+ M++ + N N+L++G+ + + D
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
YSYN L++GYC++ + +A +LC +ML EGI TYNTL
Sbjct: 402 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWH 461
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD Y+T +DGL+K A ++ I + T N +I GLCK+G
Sbjct: 462 LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMG 521
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A +IF M++ G +PD +TY +I G+CK +A + ME + P+
Sbjct: 522 KMVEAEEIFDK-MKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 576
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 164/384 (42%), Gaps = 82/384 (21%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
G L IL FT + +TFN++I GLC G+++EA +F K+ C P+ IT+ TL
Sbjct: 489 EGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL 548
Query: 65 ---------------------------------ALVALNLFE--------EMVNEFGVI- 82
+L++ LF+ +++ E G+
Sbjct: 549 IDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLIS-GLFKSRRLVEVTDLLTEMGIRG 607
Query: 83 CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P++VT +IDG CK+G M + G+ +++ + M L + G+++EAN
Sbjct: 608 LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEAN 667
Query: 133 CLLEVMIQRDVNPN-------TCTYNTLMDGFAWWSKGCRHDVYS----YNILINGYCKD 181
L++ M+ P+ Y + + C+ + YNI I G CK
Sbjct: 668 LLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 727
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
V+DA R S +++ PD+ Y T I G G V EA +
Sbjct: 728 GKVDDA----RRFFS-------------MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 770
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + V I T N LI+GLCK + A +FH L Q GL P+VVTYN +I G+
Sbjct: 771 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGY 829
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK G A L M E G+ P+
Sbjct: 830 CKIGNMDAAFKLKDKMIEEGISPS 853
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL +L N+ NSLI G C G I EA + ++ + P+ ++
Sbjct: 346 GKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 405
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL A NL ++M+ E G+ +P V+T ++ GLC+ G
Sbjct: 406 NTLLDGYCREGHTSEAFNLCDKMLQE-GI--EPTVLTYNTLLKGLCRVGAFDDALQIWHL 462
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
MM +G+ PD V + + D L K E A+ L + ++ R + T+NT++ G K
Sbjct: 463 MMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGK 522
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC D +Y LI+GYCK NV A + M E I YN+
Sbjct: 523 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNS 582
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I GL+K+ ++E + + +G I T LIDG CK
Sbjct: 583 L-----------------ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKE 625
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A+ + + +N GL+ +++ + M+ G + G+ +AN L+ M + G P+
Sbjct: 626 GMLDKAFSSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 41/264 (15%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P + +C ++++ L K+G M+ G+ PDV +++M + KDGK++EA
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCK 180
++ M V PN TY++L++G+ KG +V +Y +LI GYCK
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+++A + R M E + PD Y IDG + G + +A+
Sbjct: 309 QCKMDEAEKVLRGMQEEAA----------------LVPDERAYGVLIDGYCRTGKIDDAV 352
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + CN LI+G CK G + A + M + L PD +YN ++ G
Sbjct: 353 RLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI-TRMVDWNLKPDSYSYNTLLDG 411
Query: 301 FCKEGQHQKANGLLLDMEETGLEP 324
+C+EG +A L M + G+EP
Sbjct: 412 YCREGHTSEAFNLCDKMLQEGIEP 435
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 17 SCFT---PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
SC T PN + +N I GLC G++ +A R F L++ P+ T+ TL
Sbjct: 705 SCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI-------- 756
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
G +V + D M+ +G+ P++VT N + + L K ++ A
Sbjct: 757 -----HGYSAAGNVDEAFRLRDE------MLRRGLVPNIVTYNALINGLCKSENVDRAQR 805
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
L + Q+ + PN TYNTL+DG+ +G V +Y+ LING C
Sbjct: 806 LFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLC 865
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K ++E ++ L +M+ G+ + Y TL
Sbjct: 866 KHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 39/166 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +L PN+VT+N+LI GLC + A RLF KL+ PNV+T+
Sbjct: 763 GNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTY 822
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPD 111
NTL IDG CK G M +++G+ P
Sbjct: 823 NTL-----------------------------IDGYCKIGNMDAAFKLKDKMIEEGISPS 853
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
VVT + + + L K G +E + LL MI+ V+ Y TL+ G+
Sbjct: 854 VVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGY 899
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G A+ VF +G + ++ +CN L++ L K G A ++ +++ G+ PDV
Sbjct: 168 EKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIR-VGIVPDV 226
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IM++ FCK+G+ +A G + ME G+EPN
Sbjct: 227 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 169/363 (46%), Gaps = 61/363 (16%)
Query: 2 GRASGGFVLLG----RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPN 57
G SGG + + + + F+PN++++ +I GLC ++ +A LFK++ P+
Sbjct: 180 GLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPD 239
Query: 58 VITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------- 99
V+T+ L A +LFEE + C P VVT +IDGLCK
Sbjct: 240 VVTYGALIDGLGKQRRVKEAYDLFEEARAKG---CHPTVVTYNTMIDGLCKCGRIENALT 296
Query: 100 --DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG- 156
D + + ++PD+ T + + + L+ + E+A L E M+ +P+ TYNTL+DG
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356
Query: 157 ------------FAWWSKG--CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
F G C +V +Y +LI+ +CK + DAV L +EM EG
Sbjct: 357 CKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEM--EG---- 410
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
++ PD+ +TT I L K + EA ++F +IG C N ++
Sbjct: 411 -----------RSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK-TCKPDSVLFNTML 458
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G CKI R+ A + H M + G P + TY ++ GFC+ G++ A + +M E G
Sbjct: 459 AGYCKITRIDDAKKL-HDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGF 517
Query: 323 EPN 325
P
Sbjct: 518 PPE 520
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 48/348 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN----VFCCDPNV 58
R + + + F P+ V++N+L+ G G + +A LF ++ N+
Sbjct: 117 RVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLRSHNI 176
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGM 108
+ + +++ E+ + I P++++ T +IDGLCK M+D+ +
Sbjct: 177 VLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAI 236
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
PDVVT + D L K +++EA L E + +P TYNT++DG +
Sbjct: 237 YPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALT 296
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ D+++Y+ LING E A L EML G D TYNTL
Sbjct: 297 LYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTL---- 352
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLK 272
+DGL K+G +AM++F +G + C + T LID CK+ RL
Sbjct: 353 -------------LDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLG 399
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
A + M+ L PD VT+ +I CKE + +A+ L + +T
Sbjct: 400 DAVKLAKE-MEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKT 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 56/343 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKK--LNVFCCDPNVITFNTL---------A 65
S FT N T N+L+ R+ +A F+ NVF +P+ +++NTL
Sbjct: 96 SKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVF--EPDEVSYNTLMNGFFKAGDV 153
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLN 116
AL LF EM + + + + ++ GLC G + M P++++
Sbjct: 154 KKALALFGEMKDSGIAVLRSHNI----VLRGLCSGGKISMAWEVFKDMSGIFSPNLISYT 209
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SK 162
+M D L K K+++A L + M+ + + P+ TY L+DG +K
Sbjct: 210 IMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 269
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC V +YN +I+G CK +E+A++L +M+ E ++ PD
Sbjct: 270 GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVRE----------------PHLKPDMFT 313
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+ I+GL + +A +++ + + C + T N L+DGLCK G A +IF +
Sbjct: 314 YSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMG 373
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+V+TY ++I FCK + A L +ME L P+
Sbjct: 374 VGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPD 416
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 166/391 (42%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN VT++ LI GLC GR+ EA +L +++ C P+ T+ L A+ +
Sbjct: 263 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 322
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM + C P+V T T +ID LC++G M+ G+ P ++T N + +
Sbjct: 323 LDEMATK---ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALING 379
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K+G + A LL VM + + PN TYN LM+G SK G D
Sbjct: 380 YCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPD 439
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+YNIL++G+CK+ + A ++ M S G+ D T+ L
Sbjct: 440 RVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILG 499
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC--------- 260
M + D +T IDG K G + +F + ++C+ T T NC
Sbjct: 500 SMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDY 559
Query: 261 --------------------------LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
LI+G C+ G ++ + M+ G +P+V TY
Sbjct: 560 KLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLER-MKQAGCSPNVYTY 618
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+I+G C G+ ++A +L M G+ PN
Sbjct: 619 TIIINGLCNNGRVEEAETILFSMSSFGVSPN 649
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 158/343 (46%), Gaps = 70/343 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF--KKLNV-FCCDPNVITFNT 63
F++ R++ F + + +++ LC G ++AA +F K L + F D +V T
Sbjct: 178 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNG-FVQAAEMFCCKVLRLGFGLDTHVCTSLV 236
Query: 64 LALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLN 116
LA A +FE+M E C+P+ VT + +I GLC
Sbjct: 237 LANCRRDDLGEAFRVFEKMSKEEN--CRPNSVTYSILIHGLC------------------ 276
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+ G++EEA L + M+++ P+T TY L+ +K
Sbjct: 277 -------EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
C +V++Y ILI+ C++ +E+A + R+ML G+ T+N L
Sbjct: 330 ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL------------- 376
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I+G K G+V+ A ++ S + C I T N L++GLC++ + A+ + ++
Sbjct: 377 ----INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 432
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PD VTYNI++ GFCKEGQ A + M GLEP+
Sbjct: 433 DN-GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 474
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 159/375 (42%), Gaps = 68/375 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ ++ F+LL R++ + P+ VT+N L+ G C EG++ A +F +N +P+ T
Sbjct: 418 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 477
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKDGF----------MM 104
F L L L E+ G + K D VT T +IDG CK G M+
Sbjct: 478 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 537
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
+ T N D L KD K+ EAN +L M++ + P+ T+ L++G +
Sbjct: 538 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 597
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC +VY+Y I+ING C + VE+A ++ M S G+ + TY L
Sbjct: 598 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 657
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N P+SH+Y+ + G + + A + S
Sbjct: 658 KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 717
Query: 253 LTIETC--NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L+ E NCL + + K G P YN ++ G CKEG+ +A
Sbjct: 718 LSSEENDNNCLSNEIKKCG------------------VPTEDLYNFLVVGLCKEGRIIEA 759
Query: 311 NGLLLDMEETGLEPN 325
+ L DM + GL P+
Sbjct: 760 DQLTQDMVKHGLFPD 774
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 100/268 (37%), Gaps = 43/268 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + +L R+ + +PN+ T+ +I GLC GR+ EA + ++ F PN T+
Sbjct: 594 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 653
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
L A V + + K ++I L GF++ +
Sbjct: 654 AVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALL-SGFVLSNTA--------IGA 704
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-YNILINGY 178
LS G ++ + + + N N C N + K C YN L+ G
Sbjct: 705 RALSSTGDLDARS------LSSEENDNNCLSNEI--------KKCGVPTEDLYNFLVVGL 750
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI---NNVPPDSH 221
CK+ + +A L ++M+ G+ D + + FM + N P
Sbjct: 751 CKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFA 810
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
Y I GL G V EA K+ S + H
Sbjct: 811 SYCWVIHGLRNEGRVQEAQKLVSDLVRH 838
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 154/339 (45%), Gaps = 52/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ PN+ FN L+ G C G ++ A +F +++ P+V++FNTL
Sbjct: 222 YPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTL-------------- 267
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
C+ N+ +G M + + PDV T + + + L K+ ++EEAN L + M
Sbjct: 268 ISGYCR-----SKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEM 322
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+ + PN T+ TL+DG K G R D+ +YN LING C+D ++
Sbjct: 323 CEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDL 382
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A L EM+ G + D T+ TL M + D +T
Sbjct: 383 KEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTAL 442
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL ++G V +A ++ + + T +ID CK G +K+ + MQ G
Sbjct: 443 ISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKE-MQRDG 501
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTYN +++GFCK+GQ + A LL M + PN
Sbjct: 502 RVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPN 540
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 97/316 (30%), Positives = 147/316 (46%), Gaps = 48/316 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V+FN+LI G C + E L + P+V T++ L L + EE
Sbjct: 259 PSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGL 318
Query: 79 FGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
F +C+ P+ VT T +IDG CK G M D+G+RPD++T N + + L +
Sbjct: 319 FDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCR 378
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
DG ++EA LL MI P+ T+ TLMDG +G D +
Sbjct: 379 DGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVA 438
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+ LI+G C+D V DA + ++MLS G + PD YT ID
Sbjct: 439 FTALISGLCRDGRVRDAERMLKDMLSAGHK-----------------PDDPTYTMVIDCF 481
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G V K+ + V + T N L++G CK G++K A + H ++ N + P+
Sbjct: 482 CKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAML-NMEVVPN 540
Query: 291 VVTYNIMIHGFCKEGQ 306
+T+NI++ G CK G
Sbjct: 541 DITFNILLDGHCKHGS 556
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 39/223 (17%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
++D G P+V N++ K G + A + + + +R + P+ ++NT
Sbjct: 217 VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNT---------- 266
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
LI+GYC+ +NVE+ L M SE I D TY+ L
Sbjct: 267 -----------LISGYCRSKNVEEGFVLKSVMESERISPDVFTYSAL------------- 302
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I+GL K V EA +F + V T LIDG CK G++ +A F +M
Sbjct: 303 ----INGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE-IM 357
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G+ PD++TYN +I+G C++G ++A LL +M G +P+
Sbjct: 358 KDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK-IAWDIFHM 280
V+ I + F+ +A++ + + + + C+ L+ + K+ + W+ F++
Sbjct: 157 VFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWE-FYL 215
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G P+V +NI++HGFCK G A + ++ GL P+
Sbjct: 216 EVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPS 260
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 158/351 (45%), Gaps = 72/351 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ T++++I G C G + +A L+K++ V PNV+ F TL + A +L
Sbjct: 301 PNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSL 360
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F MV +FGV P++ +I G CK G M++ + PDV T ++ +
Sbjct: 361 FVHMV-KFGV--DPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILING 417
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + ++ EAN L + M + P++ TYN+L I+G+CK+
Sbjct: 418 LCTEERLAEANRLFQRMKNERIFPSSVTYNSL---------------------IHGFCKE 456
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E A+ LC EM S G+ + T++TL M I + PD Y
Sbjct: 457 YNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTY 516
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
TT ID +K + EA++++S + T CL+DG K GRL A D + L
Sbjct: 517 TTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFY--LEN 574
Query: 284 NPGLTP---------DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N T V + +I G C+ G +A+ DM+ G+ P+
Sbjct: 575 NQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPD 625
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 158/374 (42%), Gaps = 80/374 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L IL++ PN+V F +L+ G C ++ A LF + F DPN+ +
Sbjct: 317 GNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVY 376
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPD 111
N L I G CK G M++ + PD
Sbjct: 377 NCL-----------------------------IHGQCKSGNMLEAMGLLSEMESLNLSPD 407
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
V T ++ + L + ++ EAN L + M + P++ TYN+L+ GF
Sbjct: 408 VFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCS 467
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
S G ++ +++ LI+GYCK RN++ A+ L EM +GI D TY TL
Sbjct: 468 EMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEA 527
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF-----SAIGN---HKC 251
M + P+ H + +DG +K G + +A+ + +A G +
Sbjct: 528 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRS 587
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
CLI+GLC+ G + A F M++ G+TPD+ +Y M+ +E +
Sbjct: 588 CWKYVGFTCLIEGLCQNGYILRASRFFSD-MKSGGVTPDIWSYVSMLKAHLREKRITDTM 646
Query: 312 GLLLDMEETGLEPN 325
L DM +TG+ PN
Sbjct: 647 MLHCDMIKTGILPN 660
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 125/285 (43%), Gaps = 43/285 (15%)
Query: 83 CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C PD C I++GL + M+ +G+ PDV +V+ K G +
Sbjct: 194 CSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKE 253
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGY 178
LL+ M V PN Y + +K G ++Y+Y+ +I+GY
Sbjct: 254 KLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGY 313
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDS 220
CK N+ A L +E+L + + + TL M V P+
Sbjct: 314 CKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNL 373
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+VY I G K+G +LEAM + S + + + T LI+GLC RL A +F
Sbjct: 374 YVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQR 433
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+N + P VTYN +IHGFCKE +KA L +M +G+EPN
Sbjct: 434 -MKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPN 477
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 167/356 (46%), Gaps = 54/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE----- 73
P++ + ++ C +G++ EAA KK+ +PN++T+++L V+L E
Sbjct: 190 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 249
Query: 74 -EMVNEFGVICKPDVVTCTNIIDGLCKD-----------GFMMDQGMRPDVVTLNVMTDN 121
+ ++E GV +VVT T +I G CK G + + PD V+ D
Sbjct: 250 LKFMSEKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 307
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
+ GK+++A LL+ M++ + N N+L++G+ + + D
Sbjct: 308 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 367
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
YSYN L++GYC++ + +A +LC +ML EGI TYNTL
Sbjct: 368 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWH 427
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD Y+T +DGL+K A ++ I + T N +I GLCK+G
Sbjct: 428 LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMG 487
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A +IF M++ G +PD +TY +I G+CK +A + ME + P+
Sbjct: 488 KMVEAEEIFDK-MKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 542
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 164/384 (42%), Gaps = 82/384 (21%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
G L IL FT + +TFN++I GLC G+++EA +F K+ C P+ IT+ TL
Sbjct: 455 EGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTL 514
Query: 65 ---------------------------------ALVALNLFE--------EMVNEFGVI- 82
+L++ LF+ +++ E G+
Sbjct: 515 IDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLIS-GLFKSRRLVEVTDLLTEMGIRG 573
Query: 83 CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P++VT +IDG CK+G M + G+ +++ + M L + G+++EAN
Sbjct: 574 LTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEAN 633
Query: 133 CLLEVMIQRDVNPN-------TCTYNTLMDGFAWWSKGCRHDVYS----YNILINGYCKD 181
L++ M+ P+ Y + + C+ + YNI I G CK
Sbjct: 634 LLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKT 693
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
V+DA R S +++ PD+ Y T I G G V EA +
Sbjct: 694 GKVDDA----RRFFS-------------MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 736
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + V I T N LI+GLCK + A +FH L Q GL P+VVTYN +I G+
Sbjct: 737 LRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTLIDGY 795
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK G A L M E G+ P+
Sbjct: 796 CKIGNMDAAFKLKDKMIEEGISPS 819
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL +L N+ NSLI G C G I EA + ++ + P+ ++
Sbjct: 312 GKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 371
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL A NL ++M+ E G+ +P V+T ++ GLC+ G
Sbjct: 372 NTLLDGYCREGHTSEAFNLCDKMLQE-GI--EPTVLTYNTLLKGLCRVGAFDDALQIWHL 428
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
MM +G+ PD V + + D L K E A+ L + ++ R + T+NT++ G K
Sbjct: 429 MMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGK 488
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC D +Y LI+GYCK NV A + M E I YN+
Sbjct: 489 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNS 548
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I GL+K+ ++E + + +G I T LIDG CK
Sbjct: 549 L-----------------ISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKE 591
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A+ + + +N GL+ +++ + M+ G + G+ +AN L+ M + G P+
Sbjct: 592 GMLDKAFSSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 647
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 41/264 (15%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P + +C ++++ L K+G M+ G+ PDV +++M + KDGK++EA
Sbjct: 155 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 214
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCK 180
++ M V PN TY++L++G+ KG +V +Y +LI GYCK
Sbjct: 215 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 274
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+++A + R M E + PD Y IDG + G + +A+
Sbjct: 275 QCKMDEAEKVLRGMQEEAA----------------LVPDERAYGVLIDGYCRTGKIDDAV 318
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + CN LI+G CK G + A + M + L PD +YN ++ G
Sbjct: 319 RLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR-MVDWNLKPDSYSYNTLLDG 377
Query: 301 FCKEGQHQKANGLLLDMEETGLEP 324
+C+EG +A L M + G+EP
Sbjct: 378 YCREGHTSEAFNLCDKMLQEGIEP 401
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G A+ VF +G + ++ +CN L++ L K G A ++ +++ G+ PDV
Sbjct: 134 EKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIR-VGIVPDV 192
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IM++ FCK+G+ +A G + ME G+EPN
Sbjct: 193 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 226
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +L PN+VT+N+LI GLC + A RLF KL+ PNV+T+
Sbjct: 729 GNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTY 788
Query: 62 NTL 64
NTL
Sbjct: 789 NTL 791
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 161/358 (44%), Gaps = 57/358 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
++V + SLI+G C G + LF ++ P IT+NTL A +
Sbjct: 245 ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FE M+ E GV +P+V T T +IDGLC G M+++ P+ VT N++ +
Sbjct: 305 FEFMI-ERGV--RPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINK 361
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------------SKGCR 165
L KDG + +A ++E+M +R P+ TYN L+ G S
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV SYN LI+G CK+ + A+ + ++ + D T N L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ + + +S YT IDG K G + A + + + ++ NCL+ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L AW +F MQ PDVV++NIMI G K G + A LL+ M GL P+
Sbjct: 542 EGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPD 598
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 150/341 (43%), Gaps = 48/341 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F +L +L F N+ N L+KGLC +A L +++ P+V +
Sbjct: 120 MRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFS 179
Query: 61 FNTLAL-----VALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMDQ-------- 106
+NT+ L E+ NE G C +VT +ID CK G M +
Sbjct: 180 YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK 239
Query: 107 --GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G+ D+V + G+++ L + +++R +P TYNTL+ GF
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLK 299
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G R +VY+Y LI+G C ++A+ M+ + +A TYN +
Sbjct: 300 EASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNII- 358
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I+ L K+G V +A+++ + + T N L+ GLC G
Sbjct: 359 ----------------INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402
Query: 271 LKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKA 310
L A + ++++++ T PDV++YN +IHG CKE + +A
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQA 443
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 116/289 (40%), Gaps = 37/289 (12%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
+N F E + +C+ N + + +D G N+M L +
Sbjct: 33 VNAFSETETKLRSLCEDSNPQLKNAVSVFQQ---AVDSGSSLAFAGSNLMA-KLVRSRNH 88
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMD--------GFAW------WSKGCRHDVYSYNIL 174
E A M++ D N + + L++ GFA+ +G +VY++NIL
Sbjct: 89 ELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNIL 148
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------MAINNVPPDSH- 221
+ G C++ AVSL REM + D +YNT+ + + N S
Sbjct: 149 LKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGC 208
Query: 222 -----VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+ ID K G + EAM + + LI G C G L
Sbjct: 209 SWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKA 268
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F +++ G +P +TYN +I GFCK GQ ++A+ + M E G+ PN
Sbjct: 269 LFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPN 316
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 74/235 (31%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------- 69
P+++++N+LI GLC E R+ +A ++ L + +T N L L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 70 -------------NLFEEMVNEF----------GVICK-------PDVVTCTNIIDGLCK 99
+ + M++ F G++CK P V ++ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 100 DGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+G +DQ R PDVV+ N+M D K G ++ A LL M + ++P
Sbjct: 542 EG-SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP--- 597
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
D+++Y+ LIN + K +++A+S +M+ G DA
Sbjct: 598 ------------------DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++ +S P++ +N L+ LC EG + +A RLF+++ P+V++FN + +L
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575
Query: 70 NLFEEMVNEFGVI------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+ E ++ PD+ T + +I+ K G+ M+D G PD
Sbjct: 576 KAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAH 635
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+ + G+ ++ L++ ++ +D+ + T+MD
Sbjct: 636 ICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMD 677
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 163/355 (45%), Gaps = 52/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L R L S P++VT LI C E + +A +LF ++ C P+V+T+
Sbjct: 185 GKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTY 244
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
N L L +F + + +G C+ DV++ I+ LC G MD
Sbjct: 245 NVLIKGFCKEGRLDEAIIFLKKLPSYG--CQSDVISHNMILRSLCSGGRWMDAMKLLATM 302
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+G P VVT N++ + L + G + +A +LE+M + PN+ ++N L+ GF
Sbjct: 303 LRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGI 362
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S+GC D+ +YNIL+ CKD V+DAV + ++ S+G +YNT+
Sbjct: 363 DRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 422
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL K G A+++ + + TC ++ GL + G
Sbjct: 423 -----------------IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREG 465
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ A FH L + G+ P+ YN ++ G CK Q A L+DM G +P
Sbjct: 466 KVHEAIKFFHYL-KGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKP 519
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 166/374 (44%), Gaps = 54/374 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++G + S + ++N LI C G I EA R+ +V PN T
Sbjct: 117 IGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSV---APNAAT 173
Query: 61 FNTLALVAL-------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
++ + L +L + + + C PDVVTCT +ID CK+ M
Sbjct: 174 YDAV-LCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM 232
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM----IQRDVNPNTCTYNTLMDGFAW 159
+G +PDVVT NV+ K+G+++EA L+ + Q DV + +L G W
Sbjct: 233 RGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRW 292
Query: 160 ----------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KGC V ++NILIN C+ + A+++ M G ++ ++N L
Sbjct: 293 MDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352
Query: 210 FMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
N PD Y + L K+G V +A+ + S + + C
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 412
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
++ + N +IDGL K+G+ ++A ++ M GL PD++T ++ G +EG+ +A
Sbjct: 413 SPSLISYNTVIDGLLKVGKAELAVELLEE-MCYKGLKPDLITCTSVVGGLSREGKVHEAI 471
Query: 312 GLLLDMEETGLEPN 325
++ G++PN
Sbjct: 472 KFFHYLKGFGIKPN 485
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 143/356 (40%), Gaps = 96/356 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LIKG C EGR+ EA KKL + C +VI+ N + + A+ L
Sbjct: 239 PDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKL 298
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------------------------- 102
M+ + C P VVT +I+ LC+ G
Sbjct: 299 LATMLRKG---CFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQG 355
Query: 103 ----------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
M+ +G PD+VT N++ L KDGK+++A +L + + +P+
Sbjct: 356 FCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPS 415
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+YNT++DG K E AV L EM +G++
Sbjct: 416 LISYNTVIDGLLKVGKA---------------------ELAVELLEEMCYKGLK------ 448
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PD T+ + GL + G V EA+K F + N ++ GLC
Sbjct: 449 -----------PDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLC 497
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
K + +A D ++ N G P +Y +I G EG ++A+ L ++ GL
Sbjct: 498 KAQQTSLAIDFLVDMVAN-GCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGL 552
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 37/220 (16%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L ++G++EE + LE M + P DV + LI +CK
Sbjct: 78 RLIRNGELEEGSRFLEYMTNKGKIP---------------------DVVACTALIREFCK 116
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------NNVPPDSHVYTT 225
++A + + G DA +YN L A +V P++ Y
Sbjct: 117 IGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDA 176
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ L G + +AM+V KC + TC LID CK + A +F+ M+
Sbjct: 177 VLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNE-MRGK 235
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVVTYN++I GFCKEG+ +A L + G + +
Sbjct: 236 GCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSD 275
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+A LL + P+++T S++ GL EG++ EA + F L F PN
Sbjct: 429 VGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFI 488
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF 102
+N++ + +A++ +MV CKP + T +I G+ +G
Sbjct: 489 YNSIMMGLCKAQQTSLAIDFLVDMVANG---CKPTEASYTTLIKGITYEGL 536
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 54/355 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +L R+ F P++VT+N +I LC ++ A ++ +L + C P VIT+
Sbjct: 152 RIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYT 211
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L A+ L EEM+ G++ PD+ T II G+CK+G +
Sbjct: 212 ILIEATIVEGGINEAMKLLEEMLAR-GLL--PDMYTYNAIIRGMCKEGMVERAAELITSL 268
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+G +PDV++ N++ GK +E L+ M R PN TY+ L+ +
Sbjct: 269 TSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 328
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K D YSY+ LI+ CK+ ++ A+ + M+S G D YNT+
Sbjct: 329 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTI 388
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
A L KNG +A+++F+ + C + + N +I L G
Sbjct: 389 LAA-----------------LCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCG 431
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + ++ G+ PD +TYN +I C++G ++A GLL DME++G P
Sbjct: 432 DRSRALGMVPAMISK-GVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 485
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---KGCR----------HDVYS 170
K GK E+ LE ++ + P+ L+ GF + K R DV++
Sbjct: 80 KAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFA 139
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN +I+G+CK +E A + M + G D TYN + ++ N
Sbjct: 140 YNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN--------------R 185
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G A+KV + C+ T+ T LI+ G + A + ++ GL PD
Sbjct: 186 RKLGL---ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR-GLLPD 241
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYN +I G CKEG ++A L+ + G +P+
Sbjct: 242 MYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPD 276
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 24/161 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++V +N+++ LC G +A +F KL C PNV ++NT+ AL +
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 439
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
M+++ GV PD +T ++I LC+DG M G RP V++ N++
Sbjct: 440 VPAMISK-GV--DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 496
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--GFAWW 160
L K ++++A + MI++ PN TY L++ GFA W
Sbjct: 497 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGW 537
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 161/358 (44%), Gaps = 57/358 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
++V + SLI+G C G + LF ++ P IT+NTL A +
Sbjct: 245 ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FE M+ E GV +P+V T T +IDGLC G M+++ P+ VT N++ +
Sbjct: 305 FEFMI-ERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINK 361
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------------SKGCR 165
L KDG + +A ++E+M +R P+ TYN L+ G S
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV SYN LI+G CK+ + A+ + ++ + D T N L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ + + +S YT IDG K G + A + + + ++ NCL+ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L AW +F MQ PDVV++NIMI G K G + A LL+ M GL P+
Sbjct: 542 EGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPD 598
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 48/341 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F +L +L F N+ N L+KGLC +A L +++ P+V +
Sbjct: 120 MRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFS 179
Query: 61 FNTLAL-----VALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMDQ-------- 106
+NT+ L E+ NE G C +VT +ID CK G M +
Sbjct: 180 YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK 239
Query: 107 --GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G+ D+V + G+++ L + +++R +P TYNTL+ GF
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLK 299
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G R +VY+Y LI+G C ++A+ L M+ + +A TYN +
Sbjct: 300 EASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNII- 358
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I+ L K+G V +A+++ + + T N L+ GLC G
Sbjct: 359 ----------------INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402
Query: 271 LKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKA 310
L A + ++++++ T PDV++YN +IHG CKE + +A
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQA 443
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 85/357 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ PN VT+N +I LC +G + +A + + + P+ IT
Sbjct: 330 VGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK------PDVVTCTNIIDGLCKDG----------F 102
+N L L A +E ++ K PDV++ +I GLCK+
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
++++ D VT N++ ++ K G + +A L + + + N+ TY ++DGF
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGM 509
Query: 161 ---SKG---------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + V+ YN L++ CK+ +++ A L EM
Sbjct: 510 LNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR------------ 557
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+N PD + IDG K G I++ L+ G+ +
Sbjct: 558 -----DNNFPDVVSFNIMIDGSLKAG-------------------DIKSAESLLVGMSRA 593
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L+PD+ TY+ +I+ F K G +A M ++G EP+
Sbjct: 594 G-----------------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 156 GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GFA+ +G +VY++NIL+ G C++ AVSL REM + D +YNT+
Sbjct: 124 GFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTV 183
Query: 210 F------------MAINNVPPDSH------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+ + N S + ID K G + EAM +
Sbjct: 184 IRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGL 243
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ LI G C G L +F +++ G +P +TYN +I GFCK GQ ++A+
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEAS 302
Query: 312 GLLLDMEETGLEPN 325
+ M E G+ PN
Sbjct: 303 EIFEFMIERGVRPN 316
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 74/235 (31%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------- 69
P+++++N+LI GLC E R+ +A ++ L + +T N L L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 70 -------------NLFEEMVNEF----------GVICK-------PDVVTCTNIIDGLCK 99
+ + M++ F G++CK P V ++ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 100 DGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+G +DQ R PDVV+ N+M D K G ++ A LL M + ++P
Sbjct: 542 EG-SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP--- 597
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
D+++Y+ LIN + K +++A+S +M+ G DA
Sbjct: 598 ------------------DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++ +S P++ +N L+ LC EG + +A RLF+++ P+V++FN + +L
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575
Query: 70 NLFEEMVNEFGVI------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+ E ++ PD+ T + +I+ K G+ M+D G PD
Sbjct: 576 KAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAH 635
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+ + G+ ++ L++ ++ +D+ + T+MD
Sbjct: 636 ICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMD 677
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 164/367 (44%), Gaps = 56/367 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---- 66
L +++ P+ T+N++I G G+I +A+R+ K P+ T+ +L +
Sbjct: 281 LHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340
Query: 67 -----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
AL LFEE + G KP +V +I GL + G M +GM PD
Sbjct: 341 DGDIDHALALFEEAL---GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPD 397
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
+ T N++ + L K G + +AN LL I + P+ T+NTL+DG+
Sbjct: 398 IWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILD 457
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
+ WS G DV +YN ++NG CK ED + + ++ +G + TYN L ++
Sbjct: 458 SMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKAR 517
Query: 214 --------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETC 258
+ PD + T I G NG + EA ++F + ++ T+ T
Sbjct: 518 KVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATY 577
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I+ + + +A +FH M + G PD TY +MI GFCK G LL
Sbjct: 578 NIMINAFSEKLDMDMAQKLFHE-MGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEI 636
Query: 319 ETGLEPN 325
E G P+
Sbjct: 637 EIGFVPS 643
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 164/373 (43%), Gaps = 66/373 (17%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTL 64
+ L ++L P++ TFN L+ LC +G + E +L K+ N C PN+ TFN
Sbjct: 200 AYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVC--PNLFTFNIF 257
Query: 65 ----------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--- 105
+ A N +MVN+ G+ +PD T II G K G + D
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNK-GL--EPDDFTYNTIIYGYSKVGKIQDASR 314
Query: 106 -------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+G PD T + + +DG ++ A L E + + + P+ YNTL+ G +
Sbjct: 315 ILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLS 374
Query: 159 WW--------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
+G D+++YN++ING CK V DA +L +++G D
Sbjct: 375 QQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIF 434
Query: 205 TYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
T+NTL M + V PD Y + ++GL K + M+ F I
Sbjct: 435 TFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMI 494
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
C+ I T N LI+ LCK ++ A D+ + +N GL PD V++ +I GFC G
Sbjct: 495 MEKGCLPNIITYNILIESLCKARKVTEALDLLEEI-RNRGLIPDPVSFGTVISGFCNNGD 553
Query: 307 HQKANGLLLDMEE 319
+A L ME+
Sbjct: 554 LDEAYQLFRRMEQ 566
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 157/363 (43%), Gaps = 62/363 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN---------TLALVALNL 71
P++ ++N+++ L G +A +++ ++ P+V TF L AL L
Sbjct: 109 PSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRL 168
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
M ++ C+ + V +I G ++ + M+ G+ P + T N +
Sbjct: 169 LNNMPSQG---CELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHI 225
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------------AWW 160
L K G ++E LL +++ V PN T+N + G
Sbjct: 226 LCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMV 285
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------- 213
+KG D ++YN +I GY K ++DA + ++ +G D TY +L + +
Sbjct: 286 NKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDID 345
Query: 214 -----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ P +Y T I GL + G VL+A+++ + + I T N +I
Sbjct: 346 HALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVI 405
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+GLCK+G + A ++ + + G PD+ T+N +I G+CK + A G+L M G+
Sbjct: 406 NGLCKMGCVSDANNLLNAAIAK-GYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGV 464
Query: 323 EPN 325
P+
Sbjct: 465 TPD 467
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 31/237 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S LL + + P++ TFN+LI G C ++ A + + P+VIT
Sbjct: 411 MGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVIT 470
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------- 105
+N++ L E+++ F +I C P+++T +I+ LCK + +
Sbjct: 471 YNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIR 530
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGFA----- 158
+G+ PD V+ + +G ++EA L M Q+ + TYN +++ F+
Sbjct: 531 NRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDM 590
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
KGC D Y+Y ++I+G+CK NV + + G TT+
Sbjct: 591 DMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTF 647
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 88/248 (35%), Gaps = 81/248 (32%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
TP+++T+NS++ GLC + + FK + C PN+IT+N L AL+
Sbjct: 465 TPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALD 524
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------------------------- 101
L EE+ N G+I PD V+ +I G C +G
Sbjct: 525 LLEEIRNR-GLI--PDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMI 581
Query: 102 -----------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
M D+G PD T VM D K G + L I+
Sbjct: 582 NAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFV 641
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
P+ T+ +IN C V +AV + M+ G+ +A
Sbjct: 642 PSLTTFGR---------------------VINCLCVQHRVHEAVGIVHLMVRTGVVPEAV 680
Query: 205 TYNTLFMA 212
T+F A
Sbjct: 681 V--TIFDA 686
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 156/366 (42%), Gaps = 56/366 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ 64
LG ++ F + T + +++ C +G + A F++ PN+I F +
Sbjct: 225 LGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCK 284
Query: 65 ---ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRP 110
A + EEMV G KP+V T T +IDGLCK G+ + + +P
Sbjct: 285 RGSVKQAFEMLEEMV---GRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKP 341
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
+V+T M +D KM A LL M ++ + PNT TY TL+DG
Sbjct: 342 NVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELM 401
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+G +V +YN +++G CK V++A + + G+ AD TY L
Sbjct: 402 NVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQ 461
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + + PD H YTT I + + E+ F V T +T
Sbjct: 462 AEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTY 521
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+I G C+ G L++A FH M + G D +TY +I G CK+ + +A L M
Sbjct: 522 TSMICGYCREGNLRLALKFFHR-MSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMI 580
Query: 319 ETGLEP 324
E GL P
Sbjct: 581 EKGLTP 586
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 161/356 (45%), Gaps = 49/356 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ + P+ T N ++K + G + A LF ++ PN ++
Sbjct: 145 IGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVS 204
Query: 61 FNTLALVALNLFEEMVNEF---GVICKPDVV---TCTNIIDGLCKDGFMM---------- 104
+ + + L + ++ G+I + VV T + I+ C+ GF+
Sbjct: 205 YRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFC 264
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS 161
+ G+RP+++ M + L K G +++A +LE M+ R PN T+ L+DG W
Sbjct: 265 EMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTE 324
Query: 162 KGCR------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K R +V +Y +I+GYC+D + A L M +G+
Sbjct: 325 KAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGL---------- 374
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
P+++ YTT IDG K G A ++ + + + T N ++DGLCK G
Sbjct: 375 -------APNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKG 427
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A+ + +N GL D VTY I+I CK+ + ++A L M ++G++P+
Sbjct: 428 RVQEAYKVLKSGFRN-GLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPD 482
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 65/348 (18%)
Query: 4 ASGGFVLLGRILMSC---------FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC 54
AS F R+ ++C F ++K GR+ EA + +++
Sbjct: 104 ASSKFRHFTRLYIACAASLISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGL 163
Query: 55 DPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVT 114
P+ T LN ++V E G++ + N+ D +C +G++P+ V+
Sbjct: 164 APSTKT--------LNWVVKIVTEMGLVEYAE-----NLFDEMCA------RGVQPNCVS 204
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---------WWSK--- 162
VM K G + E++ L MI+R + T + ++ F W+ +
Sbjct: 205 YRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFC 264
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G R ++ ++ +I G CK +V+ A + EM+ G + P+
Sbjct: 265 EMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWK-----------------PNV 307
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+ +T IDGL K G+ +A ++F + NHK + T +I G C+ ++ A ++
Sbjct: 308 YTHTALIDGLCKKGWTEKAFRLFLKLVRSENHK--PNVLTYTAMISGYCRDEKMNRA-EM 364
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GL P+ TY +I G CK G ++A L+ M E G PN
Sbjct: 365 LLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPN 412
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 121/313 (38%), Gaps = 81/313 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M RA +LL R+ PN T+ +LI G C G A L +N PNV T
Sbjct: 359 MNRAE---MLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCT 415
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
+N I+DGLCK G + + G+
Sbjct: 416 YNA-----------------------------IVDGLCKKGRVQEAYKVLKSGFRNGLDA 446
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D VT ++ K ++++A L M++ + P D++S
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQP---------------------DIHS 485
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y LI +C+++ ++++ E + G+ P + YT+ I G
Sbjct: 486 YTTLIAVFCREKRMKESEMFFEEAVRFGL-----------------VPTNKTYTSMICGY 528
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G + A+K F + +H C T LI GLCK +L A ++ +++ GLTP
Sbjct: 529 CREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEK-GLTPC 587
Query: 291 VVTYNIMIHGFCK 303
VT + + +CK
Sbjct: 588 EVTRVTLAYEYCK 600
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 68/244 (27%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAAR---------------------------------- 44
F+PN+ T+N+++ GLC +GR+ EA +
Sbjct: 409 FSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQAL 468
Query: 45 -LFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNII 94
LF K+ P++ ++ TL V + FEE V FG++ P T T++I
Sbjct: 469 VLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAV-RFGLV--PTNKTYTSMI 525
Query: 95 DGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
G C++G M D G D +T + L K K++EA CL + MI++ +
Sbjct: 526 CGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLT 585
Query: 145 PNTCTYNTLMDGFAWWSKGC-----------RHDVYSYNILINGYCKDRNVEDAVSLCRE 193
P T TL + GC + V + N L+ C +R V A +
Sbjct: 586 PCEVTRVTLAYEYCKIDDGCSAMVVLERLEKKLWVRTVNTLVRKLCSERKVGMAALFFHK 645
Query: 194 MLSE 197
+L +
Sbjct: 646 LLDK 649
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP++VT+N+LI G G + E+ LF+++ C+P+VIT+N L L A
Sbjct: 163 LTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAF 222
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMT 119
F EM ++ KP+V++ + +ID LCK+G M G+ P+ T + +
Sbjct: 223 EFFREMKDK---DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLI 279
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
D K G + EA L + M+Q V+ N TY TL+DG A G
Sbjct: 280 DANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVT 339
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
++ +Y LI+G+ K R+++ A+ L EM + I+ D + T+
Sbjct: 340 PNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKII 399
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + + + +YTT +D +K G EA+ + + + +T+ T LIDGLCK
Sbjct: 400 MTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCK 459
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A F M + L P+V Y +I G CK A L +M++ + P+
Sbjct: 460 RGLVQEAIYYFGR-MPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPD 516
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 153/351 (43%), Gaps = 55/351 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKL----NVFCCDPNVITFNTL--ALVALNLFEEMVNEFG 80
N+++K L +L + +F+ L NV C P F+ L LV L + E F
Sbjct: 29 NNILKELVLSSWVLPGSDVFEILWTTRNV--CVPGFGVFDALFSVLVELGMLEAAGQCFL 86
Query: 81 VICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
+ K P +C + L K G M+ G+ P V T N+M ++ K+G
Sbjct: 87 RMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEG 146
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYN 172
M A L E M + + P+ TYNTL+DG+ GC DV +YN
Sbjct: 147 DMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYN 206
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAIN-------- 214
LIN +CK + + A REM + ++ + +Y+TL MAI
Sbjct: 207 ALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRV 266
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ P+ Y++ ID K G + EA + + L I T L+DGLC+ G + A
Sbjct: 267 GLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEA 326
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F M G+TP++ Y +IHG K KA L +M E ++P+
Sbjct: 327 EELFRA-MGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPD 376
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 144/349 (41%), Gaps = 73/349 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F+L +L N+VT+ +L+ GLC EG + EA LF+ + PN+ +
Sbjct: 286 GNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAY 345
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
L A+ LF EM + KPD++ I+ GLC
Sbjct: 346 TALIHGHIKVRSMDKAMELFNEMREK---DIKPDILLWGTIVWGLC-------------- 388
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD----- 167
+ K+EE ++ M + + N Y TLMD A++ G R +
Sbjct: 389 -----------SESKLEECKIIMTEMKESGIGANPVIYTTLMD--AYFKAGNRTEAINLL 435
Query: 168 -----------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
V ++ LI+G CK V++A+ Y M +++
Sbjct: 436 EEMRDLGTEVTVVTFCALIDGLCKRGLVQEAI-----------------YYFGRMPDHDL 478
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ VYT IDGL KN + +A K+F + + + +IDG K G + A +
Sbjct: 479 QPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALN 538
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + +M+ G+ D+ Y ++ G + GQ Q+A L +M G+ P+
Sbjct: 539 MRNKMME-MGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 166/374 (44%), Gaps = 89/374 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++ N I LC + R+ +A ++ +K+ P+V+T+ T+ A+
Sbjct: 260 SPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIG 319
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD------------------------------ 100
L+EEMV KPDV +C +I GLCK+
Sbjct: 320 LWEEMVKR---DLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALIS 376
Query: 101 ---------------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
FM G PD+VT N++ ++ G ME+A L+ M VNP
Sbjct: 377 GFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNP 436
Query: 146 NTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ +YN L+ G FA+ S G D S NILI+ +CK + V+ A+ L
Sbjct: 437 DRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELF 496
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+EM +G++ADA TY TL I+GL+ G+ A ++F + N +
Sbjct: 497 KEMGYKGMQADAVTYGTL-----------------INGLFSVGYYNLAEELFEQMLNAQI 539
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ N ++ LCK+G K A IF ++Q ++PD VT+N +I+ K + +A
Sbjct: 540 DPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKE-VSPDTVTFNTLIYWLGKRSRAIEAL 598
Query: 312 GLLLDMEETGLEPN 325
L DM G+EP+
Sbjct: 599 NLFKDMRTRGVEPD 612
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
GC D+++ NI I CK + DA+ + +M ++G D TY T+
Sbjct: 258 GCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEA 317
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M ++ PD I GL KN V EA ++ S + L++ N LI G
Sbjct: 318 IGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISG 377
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ G + A+ I + N G PD+VTYNI+++ +C G +KA L+ ME +G+ P
Sbjct: 378 FWRAGSIDKAYKIISFMRTN-GCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNP 436
Query: 325 N 325
+
Sbjct: 437 D 437
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 130/308 (42%), Gaps = 47/308 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L R+L ++ +N+LI G G I +A ++ + C+P+++T+N L
Sbjct: 352 AFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLN 411
Query: 65 ---ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKD-------GFMMDQ---GMRP 110
+ + E+++ + PD + ++ GLCK F+ D G
Sbjct: 412 HYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFC 471
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSKGCRHDVY 169
D V+ N++ D K K++ A L + M + + + TY TL++G F+ +++
Sbjct: 472 DTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELF 531
Query: 170 S-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
YNI+++ CK + + A ++ M+ + + D T+NTL
Sbjct: 532 EQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTL------- 584
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I L K +EA+ +F + T LI GL G+ +A++
Sbjct: 585 ----------IYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYE 634
Query: 277 IFHMLMQN 284
++ +M+N
Sbjct: 635 VWEYMMEN 642
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
+ V+ N LI C ++ A LFK++ + +T+ TL +A LF
Sbjct: 472 DTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELF 531
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
E+M+N P+V ++ LCK G M+ + + PD VT N + L
Sbjct: 532 EQMLN---AQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWL 588
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKD 181
K + EA L + M R V P+T T+ L+ G K ++V+ Y ++ NG D
Sbjct: 589 GKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEY-MMENGIILD 647
Query: 182 RNVED 186
R V +
Sbjct: 648 REVSE 652
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-MAINNVPPD---------- 219
Y IL++GY + + + EM+ G R YN + + N D
Sbjct: 161 YRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYYDMAL 220
Query: 220 -------SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
Y+ +I L ++ + ++ + C I CN I LCK RL
Sbjct: 221 AKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLP 280
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+ G +PDVVTY ++ G C + +A GL +M + L+P+
Sbjct: 281 DALQMVEK-MRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPD 332
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 159/352 (45%), Gaps = 52/352 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN+ T+N L+K LC R+ A +LF +++ C P+ +T+ T+ ++ E+
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
F KP V +IDG+CK+G MMD G+ P+VV+ + + ++L
Sbjct: 237 AGRF----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKGCRHDVYSY 171
G +E A L M R + N T+ L+ G W GC +V +Y
Sbjct: 293 GNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N LI+G C + ++E+A+ +C +M G + TTY+ L M
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS 412
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P+ YT +D L KN +A + + C T N I GLC GR++
Sbjct: 413 HGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEW 472
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + MQ G P++ TYN ++ + ++++A GL ++E L+PN
Sbjct: 473 AMKLLER-MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 162/347 (46%), Gaps = 54/347 (15%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLAL- 66
R L F P++ +N+LI G+C EGRI A +L ++ DPNV+++ N+L +
Sbjct: 233 ARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292
Query: 67 ----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
+A LF +M F C ++ T T +I G G M+ G P+V
Sbjct: 293 GNVELAFALFAQM---FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNV 349
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW-- 160
V N + L +G +EEA + + M + PN TY+ L+DGFA W
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409
Query: 161 --SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
S GCR +V +Y +++ CK+ + A SL +M EG + T+N
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN----------- 458
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
T+I GL NG V AMK+ + H C+ I T N L+D L ++ + + A+ +F
Sbjct: 459 ------TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLF 512
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + L P++VTYN +++GF + G +A L G P+
Sbjct: 513 QEI-EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPD 558
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 157/375 (41%), Gaps = 54/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LLG ++ + PN+V+++ +I LC G + A LF ++ + CD N+ TF
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L AL+L++ M+ + C+P+VV +I GLC +G
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQDG---CEPNVVAYNTLIHGLCSNGSLEEALQVCDQ 374
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M G P+V T +++ D +K G + A+ MI PN TY ++D S
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+GC + ++N I G C + VE A+ L M G + TTYN
Sbjct: 435 FDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ N+ P+ Y T + G + G + EA+++F
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG 554
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T N +I CK G++KIA + + PD++TY +I G C ++A
Sbjct: 555 TAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEA 614
Query: 311 NGLLLDMEETGLEPN 325
L G+ PN
Sbjct: 615 MAFLDKAINQGICPN 629
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 158/353 (44%), Gaps = 49/353 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G A + RI P + +N L+ L +E + L+ + PNV T
Sbjct: 122 VGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFT 181
Query: 61 FNTL--AL-------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+N L AL A LF EM N+ C PD VT T ++ LCK G + D
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKG---CPPDAVTYTTMVSSLCKAGKIDDARELAG 238
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------G 156
+P V N + D + K+G++E A LL M+ V+PN +Y+ +++
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298
Query: 157 FAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
FA ++ +GC +++++ LI G + +A+ L + M+ +G + YNTL
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL--- 355
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
I GL NG + EA++V + C+ + T + LIDG K G L
Sbjct: 356 --------------IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLV 401
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + ++ ++ + G P+VVTY M+ CK +AN L+ M G PN
Sbjct: 402 GASETWNRMISH-GCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 38/217 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ ++ + TPN +TFN+ IKGLC GR+ A +L +++ C PN+ T+N L AL
Sbjct: 441 LVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALF 500
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVV 113
+N +EE F I +P++VT ++ G + G M + +G PD +
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560
Query: 114 TLNVMTDNLSKDGKMEEANCLLE-VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172
T N M K GK++ A L+E V ++ +P D+ +Y
Sbjct: 561 TYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP---------------------DIITYT 599
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
LI G C N+E+A++ + +++GI + T+N L
Sbjct: 600 SLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
E L D Y M ++ + ++ I+G + G +A+K+F IG C
Sbjct: 82 ERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCK 141
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T+ N L+D L + ++ + + M+ GL P+V TYNI++ CK + A+
Sbjct: 142 PTVRIYNHLLDALLSENKFQMI-NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHK 200
Query: 313 LLLDMEETGLEPN 325
L ++M G P+
Sbjct: 201 LFVEMSNKGCPPD 213
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F L I PN+VT+N+++ G G + EA +LF K V P+ IT
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561
Query: 61 FNTL---------ALVALNLFEEM--VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR 109
+NT+ +A L E + + E+ PD++T T++I G C
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEW----HPDIITYTSLIWGAC----------- 606
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
N M +EEA L+ I + + PN T+N L+ F
Sbjct: 607 ------NWMN--------IEEAMAFLDKAINQGICPNFATWNALVRCF 640
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 106/375 (28%), Positives = 171/375 (45%), Gaps = 59/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR+ LLG++ PN+ T+ +LI GL +G+ A ++ K+ P +T+
Sbjct: 321 GRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTY 380
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ L AL +FE M++ + P+ T II G C G+
Sbjct: 381 SALINQLYVEGRFETALTIFEWMLSHDSL---PNTETYNVIIKGFCSIGYIQKATAIFDQ 437
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G P+V+T N++ K G M A LLE+M + +T TY L+ GF+ K
Sbjct: 438 MLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGK 497
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G +V +YN +INGY V+DA++L +M+ G + TYN
Sbjct: 498 LEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNM 557
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ F N + P+ YT++IDGL KNG A K+F +
Sbjct: 558 MISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRD 617
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + LIDGLC+ G+ + A + + G P+V TY ++ G C +G+ +A
Sbjct: 618 YFPNLCTYSSLIDGLCQEGQAEDAERLL-----DDGCEPNVDTYTTLVRGLCGKGRCYEA 672
Query: 311 NGLLLDMEETGLEPN 325
+ L+ M++ GL+P+
Sbjct: 673 DQLVESMKKKGLQPS 687
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 172/403 (42%), Gaps = 90/403 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F + R++ PN VT+++LI GLC+EGR+ EA + +++ +P V + T+ +
Sbjct: 256 AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAY-TIPI 314
Query: 67 VAL---NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
V+L E V G + C P+V T T +I GL +DG M+ G+
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
P VT + + + L +G+ E A + E M+ D PNT TYN ++ GF
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAI 434
Query: 158 ---------------------AWWSKG----------------CRHDVYSYNILINGYCK 180
++ +G + D ++Y LI+G+ +
Sbjct: 435 FDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSR 494
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP---------------PDSHV 222
+E A SL EM+ GI + TYN + ++ + V P S
Sbjct: 495 GGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGT 554
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I G K + EA + + + T IDGLCK GR +A+ IFH M
Sbjct: 555 YNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHE-M 613
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P++ TY+ +I G C+EGQ + A LL D G EPN
Sbjct: 614 KKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPN 652
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 159/337 (47%), Gaps = 66/337 (19%)
Query: 11 LGR-----ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
LGR +L S PN+ TFN++IK LC +G++ EA + + + P+ T+ +L
Sbjct: 185 LGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLI 244
Query: 66 L---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
+ +A +F+ MV + C P+ VT + +I+GLC +G M+D+
Sbjct: 245 IGHCKNGNLDLAFEMFDRMVKDG---CDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDK 301
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+ P V + +L G+ EA LL M +R GC
Sbjct: 302 GIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKR---------------------GCGP 340
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V +Y LI+G +D E A+ + +ML++G+ A TY+ L
Sbjct: 341 NVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSAL----------------- 383
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+ LY G A+ +F + +H + ET N +I G C IG ++ A IF +++ G
Sbjct: 384 INQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLK-AG 442
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+P+V+TYNI+IH + K+G A LL M+ GL+
Sbjct: 443 PSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLK 479
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 35/266 (13%)
Query: 94 IDGLCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
+DGL +D + M++ G+RP++ T N M L GK++EA ++ + P+T TY
Sbjct: 182 MDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYT 241
Query: 152 TLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
+L+ G F + + GC + +Y+ LING C + +E+A+ + EM+ +
Sbjct: 242 SLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDK 301
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
GI Y +++ P+ YT I GL ++G A
Sbjct: 302 GIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVA 361
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ V+ + V T T + LI+ L GR + A IF ++ + L P+ TYN++I
Sbjct: 362 IGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSL-PNTETYNVIIK 420
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFC G QKA + M + G PN
Sbjct: 421 GFCSIGYIQKATAIFDQMLKAGPSPN 446
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 136/323 (42%), Gaps = 50/323 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN-------TLALV--ALNLFEEM 75
T+ +LI G G++ A LF ++ PNV+T+N T+A V AL LF +M
Sbjct: 484 TYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKM 543
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKD 125
V V P T +I G K G M+ QG+ P+V+T D L K+
Sbjct: 544 VESGNV---PSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKN 600
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------GCRHDVYSYNILI 175
G+ A + M +RD PN CTY++L+DG + GC +V +Y L+
Sbjct: 601 GRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLV 660
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
G C +A L M +G++ P +Y + G KN
Sbjct: 661 RGLCGKGRCYEADQLVESMKKKGLQ-----------------PSEEIYRALLVGQCKNLE 703
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V A+K+F ++ + LI LCK + A +F +++ D V +
Sbjct: 704 VESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKK-HWNSDEVVWT 762
Query: 296 IMIHGFCKEGQHQKANGLLLDME 318
+++ G KEG+ + LL ME
Sbjct: 763 VLLDGLLKEGETDLSLELLHVME 785
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 110/282 (39%), Gaps = 74/282 (26%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL 71
G+++ PN++T+ S I GLC GR A ++F ++ PN+ T+++L
Sbjct: 576 GKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSL------- 628
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQGMRPDVVTLNVMTDNLSKD 125
IDGLC++G ++D G P+V T + L
Sbjct: 629 ----------------------IDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRGLCGK 666
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G+ EA+ L+E M ++ + P+ Y L+ G CK+ VE
Sbjct: 667 GRCYEADQLVESMKKKGLQPSEEIYRALL---------------------VGQCKNLEVE 705
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYI 227
A+ + M++ G + + Y L A+ + D V+T +
Sbjct: 706 SALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLL 765
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
DGL K G ++++ + + C L +T L L +G
Sbjct: 766 DGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLARELSALG 807
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 26/175 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S F + + + PN+ T++SLI GLC EG+ +A RL C+PNV T+
Sbjct: 601 GRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTY 656
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
TL A L E M + G+ +P ++ G CK+
Sbjct: 657 TTLVRGLCGKGRCYEADQLVESMKKK-GL--QPSEEIYRALLVGQCKNLEVESALKIFDS 713
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M+ G +P + + L K ++A C+ + M+++ N + + L+DG
Sbjct: 714 MVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGL 768
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 157/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++ ++ P+ T++ LI+G C + A L ++ P V+T+
Sbjct: 369 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 428
Query: 62 NTLA--------LVALN-LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ + L N + EMV KP+ V T ++ K+G
Sbjct: 429 SVIINGLCRCGNLQGTNAILREMVMNG---LKPNAVVYTTLMTAHAKEGRVEESRMILER 485
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG+ PDV N + K +MEEA L M++R + PN TY +DG++
Sbjct: 486 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGE 545
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G +V Y LI G+CK+ NV +A S+ R +LS + D TY+
Sbjct: 546 MEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSV 605
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I GL +NG + EA +FS + + T N LI G CK
Sbjct: 606 L-----------------IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 648
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A + M G+ PD+VTYNI+I G CK G+ ++A L D+E GL PN
Sbjct: 649 GNVDKASQLLEE-MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 704
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 53/346 (15%)
Query: 15 LMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++SC PN+ + +LI+G C EG + EA +F+ + +V T++ L + L+
Sbjct: 556 MLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVL-IHGLSRNG 614
Query: 74 EMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
+M FG+ + P+ T ++I G CK G M +G+ PD+VT N
Sbjct: 615 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 674
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------K 162
++ D L K G++E A L + + R + PN TY ++DG+ +
Sbjct: 675 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G D + YN+++N CK+ E A+ L +EML +G A ++NTL
Sbjct: 735 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEA 793
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M P+ YT+ ID K G + EA +++ + + T +T L+ G
Sbjct: 794 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 853
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
IG + +F ++ G+ PD +TY +MI +C+EG +A
Sbjct: 854 YHNIGNMSEVSALFEEMVAK-GIEPDKMTYYVMIDAYCREGNVMEA 898
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 173/409 (42%), Gaps = 91/409 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +L ++M+ PN V + +L+ EGR+ E+ + +++ P+V +
Sbjct: 439 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCY 498
Query: 62 NTLAL--------------------------------------------VALNLFEEMVN 77
N+L + +A F EM++
Sbjct: 499 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 558
Query: 78 EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
GV+ P+V T +I+G CK+G F++ + + DV T +V+ LS++GK
Sbjct: 559 -CGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGK 615
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNI 173
M EA + + ++ + PN TYN+L+ G KG D+ +YNI
Sbjct: 616 MHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI 675
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LI+G CK +E A +L ++ G+ + TY + M +
Sbjct: 676 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
VPPD+ +Y ++ K +A+ +F + T+ + N LI+G CK G+L+ A
Sbjct: 736 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEAN 794
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ +++ P+ VTY +I CK G +A L L+M+E + P
Sbjct: 795 HLLEEMIEKQ-FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 842
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 158/375 (42%), Gaps = 91/375 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR ++L R+ P++ +NSLI G C R+ EA ++ PN T+
Sbjct: 474 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 533
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+A F EM++ GV+ P+V T +I+G CK+G F
Sbjct: 534 GAFIDGYSKAGEMEIADRYFNEMLS-CGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRF 590
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
++ + + DV T +V+ LS++GKM EA + + ++ + PN TYN+L+ G
Sbjct: 591 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 650
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D+ +YNILI+G CK +E A +L ++ G+ + TY
Sbjct: 651 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAA 710
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + VPPD+ +Y
Sbjct: 711 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY--------------------------- 743
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
N +++ CK + + A D+F +++ G V++N +I G+CK G+ Q+A
Sbjct: 744 --------NVILNFCCKEEKFEKALDLFQEMLEK-GFA-STVSFNTLIEGYCKSGKLQEA 793
Query: 311 NGLLLDMEETGLEPN 325
N LL +M E PN
Sbjct: 794 NHLLEEMIEKQFIPN 808
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 148/321 (46%), Gaps = 55/321 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
+PN V F+ L+ G ++EA +F F P++++ N+L L+ N E
Sbjct: 142 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWK 201
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
F +C PDV T TN+I CK G + D +G P++VT NV+ L
Sbjct: 202 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLC 261
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
+ ++EA L M+ + + P D+Y+Y+ILING+C ++
Sbjct: 262 RARLLDEAIELKRSMVDKGLVP---------------------DLYTYDILINGFCMEKR 300
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+A + EM+ G++ + TYN L IDG + G + +A ++
Sbjct: 301 SREAKLMLLEMIDVGLKPEPITYNAL-----------------IDGFMRQGDIEQAFRIK 343
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + N L++G+CK G+++ A +I +M+ G+ PD TY+++I G C+
Sbjct: 344 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEK-GVEPDSQTYSLLIEGHCR 402
Query: 304 EGQHQKANGLLLDMEETGLEP 324
+A LL +M++ L P
Sbjct: 403 GQNMARAFELLDEMKKRKLAP 423
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
N P+S ++ +D K GF++EA+ VF N + ++ +CN L+ L K ++++
Sbjct: 140 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 199
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
W +F + + L PDV TY MI CK G + A +LL+M E G PN
Sbjct: 200 WKVFDGMCAHKVL-PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPN 249
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 37/229 (16%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
+ F LL +L+ P+ +N ++ C E + +A LF+++ + + ++FNTL
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM-LEKGFASTVSFNTL 780
Query: 65 A---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MD 105
A +L EEM+ + + P+ VT T++ID CK G M +
Sbjct: 781 IEGYCKSGKLQEANHLLEEMIEKQFI---PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQE 837
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---- 161
+ + P T + G M E + L E M+ + + P+ TY ++D +
Sbjct: 838 RNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVME 897
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
KG V +Y+ LI CK + + L E+ G R
Sbjct: 898 ACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFR 946
>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 369
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 161/344 (46%), Gaps = 55/344 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT---------FNTLALVALNL 71
P++VT +SL+ G C I +A + ++ +V+ N L + AL +
Sbjct: 11 PDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEV 70
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR----------PDVVTLNVMTDN 121
+ M + G+ P+VVT +++I GLCK G + D R P+V+T + + D
Sbjct: 71 LKRMKDR-GI--SPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDA 127
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
+K GK+ + + + ++MIQ ++PN TY++L+ G SKGC +
Sbjct: 128 YAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPN 187
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
V +Y+ L NG+ K V+D + L +M G+ A+ + NTL
Sbjct: 188 VVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFG 247
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+M N + P+ Y + GL+ NG V +A+ F + + L I T +I G+CK
Sbjct: 248 YMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKAC 307
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+K A+D+F+ L + + PD Y IMI + G +A+ L
Sbjct: 308 MVKEAYDLFYKL-KFKRVEPDFKAYTIMIAELNRAGMRTEADAL 350
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 116/285 (40%), Gaps = 68/285 (23%)
Query: 103 MMDQGMRPDVVTL----------NVMTDNLSKDGKMEE---------------------- 130
MM G+ PD+VT N + D + G+ME+
Sbjct: 4 MMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRL 63
Query: 131 ---ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
A +L+ M R ++PN TY++L+ G SK +V +++
Sbjct: 64 VVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSA 123
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNV-------------- 216
LI+ Y K + S+ + M+ I + TY++L + N V
Sbjct: 124 LIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKG 183
Query: 217 -PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y+T +G +K+ V + +K+ + +CN LI G + G++ +A
Sbjct: 184 CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLAL 243
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+F + N GL P++ +YNI++ G G+ +KA M++T
Sbjct: 244 GVFGYMTSN-GLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 287
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 53/163 (32%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G D+ + + L+NG+C +++DAV + +M GI+ D V
Sbjct: 8 GIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVV-----------------V 50
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
T ID L KN V+ A++V M
Sbjct: 51 DTILIDTLCKNRLVVPALEVLKR------------------------------------M 74
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G++P+VVTY+ +I G CK G+ A L +M+ + PN
Sbjct: 75 KDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 117
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R G LL + N V+ N+LIKG G+I A +F + PN+ ++
Sbjct: 202 SRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSY 261
Query: 62 NTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKDGFMMD---------- 105
N + L A E+ ++ F + K D++T T +I G+CK + +
Sbjct: 262 NIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKF 321
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
+ + PD +M L++ G EA+ L
Sbjct: 322 KRVEPDFKAYTIMIAELNRAGMRTEADAL 350
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 157/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++ ++ P+ T++ LI+G C + A L ++ P V+T+
Sbjct: 360 GKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTY 419
Query: 62 NTLA--------LVALN-LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ + L N + EMV KP+ V T ++ K+G
Sbjct: 420 SVIINGLCRCGNLQGTNAILREMVMNG---LKPNAVVYTTLMTAHAKEGRVEESRMILER 476
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG+ PDV N + K +MEEA L M++R + PN TY +DG++
Sbjct: 477 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGE 536
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G +V Y LI G+CK+ NV +A S+ R +LS + D TY+
Sbjct: 537 MEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSV 596
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I GL +NG + EA +FS + + T N LI G CK
Sbjct: 597 L-----------------IHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 639
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A + M G+ PD+VTYNI+I G CK G+ ++A L D+E GL PN
Sbjct: 640 GNVDKASQLLEE-MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPN 695
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 53/346 (15%)
Query: 15 LMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++SC PN+ + +LI+G C EG + EA +F+ + +V T++ L + L+
Sbjct: 547 MLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVL-IHGLSRNG 605
Query: 74 EMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
+M FG+ + P+ T ++I G CK G M +G+ PD+VT N
Sbjct: 606 KMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 665
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------K 162
++ D L K G++E A L + + R + PN TY ++DG+ +
Sbjct: 666 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 725
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G D + YN+++N CK+ E A+ L +EML +G A ++NTL
Sbjct: 726 GVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEA 784
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M P+ YT+ ID K G + EA +++ + + T +T L+ G
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
IG + +F ++ G+ PD +TY +MI +C+EG +A
Sbjct: 845 YHNIGNMSEVSALFEEMVAK-GIEPDKMTYYVMIDAYCREGNVMEA 889
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 173/409 (42%), Gaps = 91/409 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +L ++M+ PN V + +L+ EGR+ E+ + +++ P+V +
Sbjct: 430 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCY 489
Query: 62 NTLAL--------------------------------------------VALNLFEEMVN 77
N+L + +A F EM++
Sbjct: 490 NSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549
Query: 78 EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
GV+ P+V T +I+G CK+G F++ + + DV T +V+ LS++GK
Sbjct: 550 -CGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGK 606
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNI 173
M EA + + ++ + PN TYN+L+ G KG D+ +YNI
Sbjct: 607 MHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNI 666
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LI+G CK +E A +L ++ G+ + TY + M +
Sbjct: 667 LIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
VPPD+ +Y ++ K +A+ +F + T+ + N LI+G CK G+L+ A
Sbjct: 727 VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEAN 785
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ +++ P+ VTY +I CK G +A L L+M+E + P
Sbjct: 786 HLLEEMIEKQ-FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMP 833
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 158/375 (42%), Gaps = 91/375 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR ++L R+ P++ +NSLI G C R+ EA ++ PN T+
Sbjct: 465 GRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTY 524
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+A F EM++ GV+ P+V T +I+G CK+G F
Sbjct: 525 GAFIDGYSKAGEMEIADRYFNEMLS-CGVL--PNVGIYTALIEGHCKEGNVTEAFSVFRF 581
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
++ + + DV T +V+ LS++GKM EA + + ++ + PN TYN+L+ G
Sbjct: 582 ILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGN 641
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D+ +YNILI+G CK +E A +L ++ G+ + TY
Sbjct: 642 VDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAA 701
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + VPPD+ +Y
Sbjct: 702 MVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIY--------------------------- 734
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
N +++ CK + + A D+F +++ G V++N +I G+CK G+ Q+A
Sbjct: 735 --------NVILNFCCKEEKFEKALDLFQEMLEK-GFA-STVSFNTLIEGYCKSGKLQEA 784
Query: 311 NGLLLDMEETGLEPN 325
N LL +M E PN
Sbjct: 785 NHLLEEMIEKQFIPN 799
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 53/311 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
+PN V F+ L+ G ++EA +F F P++++ N+L L+ N E
Sbjct: 151 SPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWK 210
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
F +C PDV T TN+I CK G + D V+ + K ++EA
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK--------RVLLEMGEKARLLDEAIE 262
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L M+ + + P D+Y+Y+ILING+C ++ +A + E
Sbjct: 263 LKRSMVDKGLVP---------------------DLYTYDILINGFCMEKRSREAKLMLLE 301
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M+ G++ + TYN L IDG + G + +A ++ +
Sbjct: 302 MIDVGLKPEPITYNAL-----------------IDGFMRQGDIEQAFRIKDEMVACGIEA 344
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N L++G+CK G+++ A +I +M+ G+ PD TY+++I G C+ +A L
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEMMEK-GVEPDSQTYSLLIEGHCRGQNMARAFEL 403
Query: 314 LLDMEETGLEP 324
L +M++ L P
Sbjct: 404 LDEMKKRKLAP 414
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 88/386 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F + + PN T+NSLI G C +G + +A++L +++ + +P+++T+
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664
Query: 62 NTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKD-----GF-----MMD 105
N L L E N F G P+ VT ++DG CK F M+
Sbjct: 665 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724
Query: 106 QGMRPDV----------------------------------VTLNVMTDNLSKDGKMEEA 131
+G+ PD V+ N + + K GK++EA
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEA 784
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMD--------GFA---WWSKGCRH---DVYSYNILING 177
N LLE MI++ PN TY +L+D G A W R+ +Y L++G
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
Y N+ + +L EM+++GI PD Y ID + G V+
Sbjct: 845 YHNIGNMSEVSALFEEMVAKGIE-----------------PDKMTYYVMIDAYCREGNVM 887
Query: 238 EAMKVFSAI------GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
EA K+ I L + TC+ + G G + A ++ +++ G +
Sbjct: 888 EACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKF-GWVSNT 946
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
+ ++ G + ++ LL M
Sbjct: 947 TSLGDLVDGNQNGANSEDSDNLLKQM 972
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
N P+S ++ +D K GF++EA+ VF N + ++ +CN L+ L K ++++
Sbjct: 149 NGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELF 208
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
W +F + + L PDV TY MI CK G + A +LL+M E
Sbjct: 209 WKVFDGMCAHKVL-PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKA 254
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 173/397 (43%), Gaps = 80/397 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S G LLG + F+PN V +N+LI C EG+ +A +L ++ P+V+TF
Sbjct: 105 GFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTF 164
Query: 62 NTL---------ALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
N L A +F +M ++E + +P+++T ++ G CK+G
Sbjct: 165 NARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFE 224
Query: 103 ------------------------------------MMDQGMRPDVVTLNVMTDNLSKDG 126
M+D GM P+V + N++ D L K+G
Sbjct: 225 KMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNG 284
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
+ +A L+ +M V P+T TY TL+ G+ K GC + Y+ N
Sbjct: 285 VLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCN 344
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-NNVPPDSHVYTTYIDGLY 231
IL+ K+ + +A L ++M +G D T N + + NN D + ++G++
Sbjct: 345 ILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAI--EIVNGMW 402
Query: 232 KNGFVLEAMKVFSAIG-------NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+G S IG KC+ + + + +I GLCK GR+ A F + M
Sbjct: 403 THGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKF-IEMMG 461
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
L PD Y++ IH FCKEG+ A +L DME+ G
Sbjct: 462 KNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKG 498
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 106/438 (24%), Positives = 183/438 (41%), Gaps = 119/438 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPN 57
G+ L+ + +P++VTFN+ I LC+ G++LEA+R+F+ + + PN
Sbjct: 140 GKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPN 199
Query: 58 VITFNTLA---------LVALNLFEEM-VNE------------FGVI------------- 82
+IT+N + A LFE+M V+E G++
Sbjct: 200 IITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLK 259
Query: 83 ------CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDG 126
+P+V + ++DGLCK+G + D G+ PD VT + G
Sbjct: 260 EMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTG 319
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------------KGCRHDVYS 170
K+ EAN +L M++ +PN T N L+ ++ W KG D +
Sbjct: 320 KVSEANNVLREMMRDGCSPNNYTCNILL--YSLWKEGRISEAEELLQKMNEKGYVIDTVT 377
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRA-----------------------DATTYN 207
NI+I+G C + ++ A+ + M + G A D +Y+
Sbjct: 378 CNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYS 437
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ + N+ PDS +Y +I K G + A +V +
Sbjct: 438 TIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKK 497
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQH 307
C T++T N LI GL G ++I+ ++ M+ G++PDV YN ++ C+ G+
Sbjct: 498 GCNKTLQTYNSLIMGL---GSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRV 554
Query: 308 QKANGLLLDMEETGLEPN 325
+ A +L +M + G+ PN
Sbjct: 555 KDAPSVLDEMLQKGISPN 572
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 163/424 (38%), Gaps = 115/424 (27%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
++ S +P TFN LI LC G + +A LF K+ C+PN +F L
Sbjct: 47 MVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGF 106
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
L L EM G P+ V +I CK+G M G+ PDVVT
Sbjct: 107 TSKGLELLGEM-RRLGF--SPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVT 163
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDV----NPNTCTYNTLMDGF----------AWW 160
N L GK+ EA+ + M +V PN TYN ++ GF A +
Sbjct: 164 FNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALF 223
Query: 161 SK---------------------------------------GCRHDVYSYNILINGYCKD 181
K G +VYSYNI+++G CK+
Sbjct: 224 EKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKN 283
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMA---------INNV---------PPDSHVY 223
+ DA L R M S G+ D TY TL NNV P+++
Sbjct: 284 GVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTC 343
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ L+K G + EA ++ + V+ TCN +IDGLC G+L A +I + +
Sbjct: 344 NILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWT 403
Query: 284 NPGLT----------------------PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ PD+++Y+ +I G CK G+ +A ++M
Sbjct: 404 HGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKN 463
Query: 322 LEPN 325
L+P+
Sbjct: 464 LQPD 467
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 135/325 (41%), Gaps = 66/325 (20%)
Query: 1 MGRASGGFV-LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
+G A F+ ++G+ L P+ ++ I C EG+I A R+ K + C+ +
Sbjct: 449 VGEAKKKFIEMMGKNLQ----PDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQ 504
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
T+N+L + G+ K + +ID M ++G+ PDV N +
Sbjct: 505 TYNSLIM-------------GLGSKNQIFEIYGLIDE------MRERGVSPDVSIYNNVL 545
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+L + G++++A +L+ M+Q+ ++PN + S++ILI +C
Sbjct: 546 SSLCEGGRVKDAPSVLDEMLQKGISPN---------------------ISSFSILIKAFC 584
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF-MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
K D + + +F +A+N +Y+ + L G V++
Sbjct: 585 K-------------------ACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVK 625
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A ++F + + LID LCK +L A I H L+ + G D ++ +I
Sbjct: 626 AKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLI-DKGYWFDPASFMPVI 684
Query: 299 HGFCKEGQHQKANGLLLDMEETGLE 323
G K G +A+ L M E E
Sbjct: 685 DGLGKRGNKHEADELAEKMMEMASE 709
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 162/367 (44%), Gaps = 60/367 (16%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-- 65
+ IL F P + +N LI C EG I +A +F ++ P ++FNTL
Sbjct: 208 WTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLING 267
Query: 66 -LVALNLFE-----EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
+ NL E + + E + PDV T + +I GLCK+G M +G+R
Sbjct: 268 LCKSRNLDEGFRLKKTMEENRIY--PDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLR 325
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P+ +T + D + +M+ A M+ V P+ YNTL++G
Sbjct: 326 PNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
G + D +Y LI+GYCK+ ++E A+ + + M EG+ D + L
Sbjct: 386 VDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCR 445
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTI 255
M + PD YT IDG K G V K+ I HK +
Sbjct: 446 DGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP--GV 503
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N L++GLCK G++K A ++ M N G+TPD +TYNI++ G CK G KA LL
Sbjct: 504 ITYNVLMNGLCKQGQMKNA-NMLLEAMLNLGVTPDDITYNILLEGHCKNG---KAEDLLK 559
Query: 316 DMEETGL 322
E GL
Sbjct: 560 LRNEKGL 566
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--- 159
+++ G P V N++ + K+G + +A + + +R + P T ++NTL++G
Sbjct: 214 ILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRN 273
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G R DV++Y++LI+G CK+ ++ A L EM G+R + T+
Sbjct: 274 LDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTA 333
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PD +Y T ++GL K G V +A K+ +
Sbjct: 334 LIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVG 393
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T LIDG CK G L+ A +I M G+ D V + +I GFC++G+ + A
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEI-RKGMNEEGVVLDNVAFTALISGFCRDGRVRDA 452
Query: 311 NGLLLDMEETGLEPN 325
L +M E G++P+
Sbjct: 453 ERTLREMVEAGMKPD 467
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 97/231 (41%), Gaps = 46/231 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + M P+ +T+ +LI G C EG + A + K +N + + F L
Sbjct: 385 LVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFC 444
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A EMV E G+ KPD T T +IDG CK G M G +P
Sbjct: 445 RDGRVRDAERTLREMV-EAGM--KPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKP 501
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
V+T NV+ + L K G+M+ AN LLE M+ V P+ T
Sbjct: 502 GVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDIT--------------------- 540
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
YNIL+ G+CK+ ED + L E +G+ D Y +L N D
Sbjct: 541 YNILLEGHCKNGKAEDLLKLRNE---KGLIVDYAYYTSLVSEYNKSLKDRQ 588
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 10/207 (4%)
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+S+ GK A+ ++ + ++ LM A+W G D L+ ++
Sbjct: 128 VSRKGKDSAASVFAAILDTAGTRCSNFVFDALM--IAYWDSGFVSDAIQCFRLV----RN 181
Query: 182 RNVEDAVSLCREMLSEGIRADA-TTYNTLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLE 238
N + C +L + I +++ T T + I PP Y I+ K G + +
Sbjct: 182 SNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRD 241
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A +F+ I T + N LI+GLCK L + + + +N + PDV TY+++I
Sbjct: 242 AKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEEN-RIYPDVFTYSVLI 300
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
HG CKEG+ A L +M++ GL PN
Sbjct: 301 HGLCKEGRLDVAEQLFDEMQQRGLRPN 327
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 1/160 (0%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
RH SY + N + ++ S+ R ++S + A + + + V+
Sbjct: 98 RHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVFD 157
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ + +GFV +A++ F + N + C L+D + W + +++
Sbjct: 158 ALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEY 217
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G P V YNI+I+ FCKEG + A + ++ + GL P
Sbjct: 218 -GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRP 256
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF LL + ++ P ++T+N L+ GLC +G++ A L + + P+ IT+
Sbjct: 482 GNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541
Query: 62 NTL 64
N L
Sbjct: 542 NIL 544
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 166/368 (45%), Gaps = 46/368 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A +L +LM C ++ TFN L+ GLC GR+ EAARL ++ C P+V+T+
Sbjct: 227 GVAEAAMLLDEMLLMGC-AADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTY 285
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
L L +E G + + +VV +I G +G M +G
Sbjct: 286 GFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCP 345
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW------ 160
PDV T +++ L K G+ A +L+ M ++ PN TY+TL+ F W
Sbjct: 346 PDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 405
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+KG + YN +I CKD ++ A L +EM S+G + D TYNT+ + N
Sbjct: 406 LDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCN 465
Query: 216 ------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
V + Y T I L +NG E +++ S + H C L + +
Sbjct: 466 NDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVIS 525
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI LCK G + + + M G+ P+ +YN++I+ CK G+ + A L +M
Sbjct: 526 YNGLIKALCKEGNVDRSMALLEE-MVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM 584
Query: 318 EETGLEPN 325
GL P+
Sbjct: 585 LNQGLTPD 592
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 159/339 (46%), Gaps = 56/339 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++ T++ L+ GLC GR A R+ ++ C PN++T++TL A +
Sbjct: 346 PDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 405
Query: 72 FEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
++M+ + F + + II LCKDG M QG +PD+ T N M
Sbjct: 406 LDQMLAKGFSM----NSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIY 461
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKG-----------CRH 166
+L + MEEA + +I+ V N TYNTL+ W +G C+
Sbjct: 462 HLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQL 521
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV SYN LI CK+ NV+ +++L EM+++GI+ + +YN L
Sbjct: 522 DVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNML----------------- 564
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+ L K G V +A+++ + N I T N LI+GLCK+G A ++ L N
Sbjct: 565 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL-PNEN 623
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD+VTYNI+I CK A LL G+ PN
Sbjct: 624 VHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPN 662
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 55/312 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
+L ++L F+ N +N +I LC +G++ +A RL +++ C P++ T+NT+
Sbjct: 404 AMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHL 463
Query: 69 LN--LFEEMVNEFGVICKPDVV----TCTNIIDGLCKDGF----------MMDQGMRPDV 112
N L EE + F + + VV T +I L ++G M+ G + DV
Sbjct: 464 CNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDV 523
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172
++ N + L K+G ++ + LLE M+ + + PN +SYN
Sbjct: 524 ISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNN---------------------FSYN 562
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+LIN CK V DA+ L +EML++G+ D TYNTL I+GL K
Sbjct: 563 MLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTL-----------------INGLCK 605
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G+ A+ + + N I T N LI CK+ L A + + G+ P+
Sbjct: 606 VGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISG-GIVPNER 664
Query: 293 TYNIMIHGFCKE 304
T+ +M+ F ++
Sbjct: 665 TWGMMVQNFVRQ 676
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 160/398 (40%), Gaps = 80/398 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
+L R+L P TF + LC GR +A L + + C P+ + + T+
Sbjct: 161 ALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIH 220
Query: 65 ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
ALVA E +++E ++ C DV T +++ GLC G MM QG P
Sbjct: 221 ALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMP 280
Query: 111 DVVTLNVMTDNLSK-------------------------------DGKMEEANCLLEVMI 139
VVT + L + +GK+ A L E+M
Sbjct: 281 SVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMG 340
Query: 140 QRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVE 185
+ P+ TY+ LM G KGC ++ +Y+ L++ +C++ +
Sbjct: 341 SKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWD 400
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYI 227
DA ++ +ML++G ++ YN + A+ PD Y T I
Sbjct: 401 DARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMI 460
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L N + EA +F + V T N LI L + GR + + ++ + G
Sbjct: 461 YHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH-GC 519
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV++YN +I CKEG ++ LL +M G++PN
Sbjct: 520 QLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPN 557
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
SYN++++ + DA+ L R ML + + T+ M
Sbjct: 144 SYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGM 203
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
A + PD+ +Y T I L G V EA + + C + T N L+ GLC +GR+
Sbjct: 204 ARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRV 263
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ A + +M G P VVTY ++ G C+ Q +A +L + E
Sbjct: 264 REAARLVDRMMTQ-GCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPE 310
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +L TP++VT+N+LI GLC G A L +KL P+++T+
Sbjct: 572 GKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY 631
Query: 62 NTL 64
N L
Sbjct: 632 NIL 634
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 160/360 (44%), Gaps = 57/360 (15%)
Query: 5 SGGFVLLGRI----------LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC 54
+ GF GR+ + + +T + LI LC G EA +L + +
Sbjct: 17 ADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTMRLKRF 76
Query: 55 DPNVITFNTLA--LVALNLFEE---MVNEFGVICKPDVVTCTNIIDGLCK-----DGF-- 102
I ++T+ L LN EE ++ + PD +T I++ LCK D
Sbjct: 77 KRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALAT 136
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M +G++PD N + L ++ K+EEA L E M+++ +NPN TYNTL++G
Sbjct: 137 VEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCK 196
Query: 158 AWW------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
AW KG SYN LI+G+CK +++ A + +M+
Sbjct: 197 AWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR--------- 247
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+N P+ YTT IDGL K+G V A +V + + T +CLIDG
Sbjct: 248 --------SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK+ R+ A + ++ G+ P VVTYNI+++ C+ + + A L M + P
Sbjct: 300 CKVRRVDEAHKLLEQMVTQ-GIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPT 358
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 61/323 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ +N ++ GLC E ++ EA LF+K+ +PNV+T+NTL A L
Sbjct: 147 PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 206
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------DQGMR----PDVVTLNVMTDN 121
F+EM + V P V+ +IDG CK ++ D+ +R P+VVT + D
Sbjct: 207 FKEMAGKGYV---PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 263
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
LSK GK++ A +L+ M+++ V PN TY+ L+D G+CK
Sbjct: 264 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID---------------------GFCKV 302
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
R V++A L +M+++GI TYN L ++ L + + +A K
Sbjct: 303 RRVDEAHKLLEQMVTQGIAPTVVTYNIL-----------------LNSLCRADKLEDAFK 345
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F + +C T+ T N L+ LC +L A ++ ++ G PD +TY+ + G
Sbjct: 346 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK-GCPPDAITYDTLAWGL 404
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
+ G+ +A L+ M+ T P
Sbjct: 405 TRAGKVHEAQELMEKMKLTKRNP 427
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 36/234 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--- 65
+L +++ PN+VT+N+LI GLC RI A LFK++ P +++NTL
Sbjct: 170 LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 229
Query: 66 ------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
+ A ++F++MV C P+VVT T +IDGL K G M+ +G+
Sbjct: 230 CKKKDLVAAKDVFDKMVRSN---CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 286
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAW 159
P+V T + + D K +++EA+ LLE M+ + + P TYN L+ D F
Sbjct: 287 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346
Query: 160 W----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + C V +YN L+ C + ++ A L EM+++G DA TY+TL
Sbjct: 347 FRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 42/282 (14%)
Query: 85 PDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLN-----VMTDNLSKDGKMEEANCL 134
P T + DG K G + QGM TL ++ L K G +EA L
Sbjct: 8 PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67
Query: 135 LEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH---DVYSYNILINGYCKD 181
L M + Y+T++ + K R+ D +Y ++ CK
Sbjct: 68 LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKT 127
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
+ ++DA++ EM + GI+ DA YN + M + P+ Y
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I+GL K + A ++F + V T + N LIDG CK L A D+F +++
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 247
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTY +I G K G+ Q A +L M + G+ PN
Sbjct: 248 S-NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 288
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 92/254 (36%), Gaps = 67/254 (26%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRN 183
M R V P T+NT+ DGFA + G Y ILI+ CK N
Sbjct: 1 MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF--------------------------------- 210
++A L M + + A Y+T+
Sbjct: 61 FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPI 120
Query: 211 -------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
MA + PD+ +Y + GL + V EA +F + +
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T N LI+GLCK R++ A+++F M G P V+YN +I GFCK+ A
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKE-MAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 239
Query: 312 GLLLDMEETGLEPN 325
+ M + PN
Sbjct: 240 DVFDKMVRSNCVPN 253
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L ++ TPN+ T++ LI G C R+ EA +L +++ P V+T+
Sbjct: 268 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 327
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK----DGF------MMD 105
N L +L + E+ F + C P VVT ++ LC DG M+
Sbjct: 328 NILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIA 387
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
+G PD +T + + L++ GK+ EA L+E M NP
Sbjct: 388 KGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+N+LI+GLC GR A + + + C P+V+T+ L A+ L
Sbjct: 164 PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKL 223
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
+EM ++ C PD+VT +++G+C++G + D G P+ V+ N++
Sbjct: 224 LDEMHDKG---CAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKG 280
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + E+A L+E M + PN T+N L+ GC +
Sbjct: 281 LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPN 340
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
SYN L++ +CK + + A+ M+S G D +YNTL A
Sbjct: 341 SLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTA--------------- 385
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L +NG V A+++ + + C + + N +IDGL K G+ K A ++ M + GL
Sbjct: 386 --LCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDE-MTSKGL 442
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD++TY+ + G C+E + ++A +++ G+ P
Sbjct: 443 QPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPT 480
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 171/354 (48%), Gaps = 57/354 (16%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
+ G R +++ P+++ +N+++ G C G++ A RL + V +P+ T+NTL
Sbjct: 116 ASGRTADARRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADMPV---EPDAYTYNTL 172
Query: 65 ---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMD 105
AL + E+M F C PDVVT T +++ CK G+ M D
Sbjct: 173 IRGLCGRGRTSNALAVLEDM---FRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHD 229
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS- 161
+G PD+VT NV+ + + ++G++E+A L+ + PNT +YN ++ G W
Sbjct: 230 KGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWED 289
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
KGC +V ++N+LI+ C+ VE A+ + +M G ++ +YN L
Sbjct: 290 AEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLH 349
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
A K + +AM+ + + C I + N L+ LC+ G +
Sbjct: 350 A-----------------FCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEV 392
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A ++ H L ++ G +P +++YN +I G K G+ ++A LL +M GL+P+
Sbjct: 393 DVAIELLHQL-KDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPD 445
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 56/337 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL---------- 69
P++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L L
Sbjct: 233 APDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYN-IVLKGLFTAERWEDAE 291
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
L EEM ++ C P+VVT +I LC+ G M G P+ ++ N +
Sbjct: 292 KLMEEMAHKG---CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLL 348
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
K K+ +A +E+M+ R P+ +YNTL+ KGC
Sbjct: 349 HAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCS 408
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ SYN +I+G K ++A+ L EM S+G++ D TY+T+
Sbjct: 409 PVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTI---------------- 452
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
GL + + EA++ F + + T N ++ GLCK A D+F ++ +
Sbjct: 453 -ASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISS- 510
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G P+ TY I++ G EG ++A L + G+
Sbjct: 511 GCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL + P+++T++++ GLC E RI EA R F K+ P +
Sbjct: 425 GKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALY 484
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-QGMRPD 111
N + L A++LF M++ C P+ T T +++GL +G + + + +
Sbjct: 485 NAILLGLCKRRETHNAIDLFAYMISSG---CMPNESTYTILVEGLAYEGLVKEARELFAQ 541
Query: 112 VVTLNVMTDNLSKDGKME 129
+ + V+ L K G ++
Sbjct: 542 LCSRGVVNKKLMKKGSIK 559
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 160/364 (43%), Gaps = 55/364 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G LL R+ + V +N L+ GLC R+LEA + + + +T+ TL
Sbjct: 213 GARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLV 272
Query: 66 L---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
+AL + ++M++ V P V +C+ ++DGL K G + +
Sbjct: 273 YGFCRTEELEMALEMTDDMLSLHFV---PSVASCSFMVDGLRKRGHIDKAFRLACHLGEL 329
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
GM P++ N + D L KD + EA L M R + PN TY L+
Sbjct: 330 GMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDA 389
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
KG R VY YN LINGYC+ N A L EM+ +G+ A +Y+ L
Sbjct: 390 LCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAG 449
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
MA N V + + +TT I G K+G + EA ++F + + V
Sbjct: 450 LCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPN 509
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N +I+G C++G ++ A+ ++ M + GLTPD TY +I C KA +
Sbjct: 510 EVTFNVMIEGYCRVGNVRKAFQLYDQ-MVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFV 568
Query: 315 LDME 318
D+E
Sbjct: 569 DDLE 572
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 153/372 (41%), Gaps = 90/372 (24%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+ TF +LI G C +G + EAARLF K+ PN +TFN + A L+
Sbjct: 474 NVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLY 533
Query: 73 EEMVNE-------------------FGVICKPDVV-------------TCTNIIDGLCKD 100
++MV+ G + + V + T ++ G CK+
Sbjct: 534 DQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKE 593
Query: 101 GFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
G + + +G++ D+++ V+ K E+ + L M ++ V P+ +
Sbjct: 594 GRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFH 653
Query: 151 NTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
++D W K GC +V +Y +LIN CK + A LC EML
Sbjct: 654 TCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEML- 712
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ P+S Y ++D L G LE KV A C+
Sbjct: 713 ----------------VGRFLPNSFTYNCFLDFLANEG-ELEKAKVLHATILEGCLANTV 755
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N LI G CK G+++ A D LMQN G PD ++Y+ +I+ CK G KA L
Sbjct: 756 TFNTLIKGFCKAGQIQGAID----LMQNNTESGFFPDCISYSTIINELCKVGDINKAFQL 811
Query: 314 LLDMEETGLEPN 325
+M GL+P+
Sbjct: 812 WNEMLYKGLKPD 823
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 156/367 (42%), Gaps = 56/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ P+ +++ LI GLC +G + A L +++ NV TF TL
Sbjct: 427 LLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFC 486
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A LF++M++ V P+ VT +I+G C+ G M+D+G+ P
Sbjct: 487 KDGNMDEAARLFDKMIDSSVV---PNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTP 543
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW 159
D T + L +A ++ + V N+ + TLM GF W
Sbjct: 544 DNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIW 603
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
++G + D+ S+ +++ K + E L REM +G++ D + +
Sbjct: 604 DEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKE 663
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ YT I+ L K+G++ A + + + + T
Sbjct: 664 ENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTY 723
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
NC +D L G L+ A + +++ G + VT+N +I GFCK GQ Q A L+ +
Sbjct: 724 NCFLDFLANEGELEKAKVLHATILE--GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNT 781
Query: 319 ETGLEPN 325
E+G P+
Sbjct: 782 ESGFFPD 788
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
SKG + YN+L+ G C++ V +AV + M+ GI AD TY TL
Sbjct: 223 SKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEELE 282
Query: 211 MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
MA+ + P + +DGL K G + +A ++ +G V + CN LI
Sbjct: 283 MALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNALI 342
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH----------------------- 299
D LCK R + A +F M N GL P+ VTY I+IH
Sbjct: 343 DKLCKDRRFREAERLFRG-MANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401
Query: 300 ------------GFCKEGQHQKANGLLLDMEETGLEPN 325
G+C+ +A GLL +M E GL P+
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPS 439
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 128/334 (38%), Gaps = 90/334 (26%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL----- 71
+C N + +L+ G C EGR+ E ++ ++ ++I+F + AL L
Sbjct: 574 NCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEK 633
Query: 72 ----FEEMVNEFGVICKPDVV--TC--------TNIIDGL-CKDGFMMDQGMRPDVVTLN 116
F EM E GV KPD V TC NI+ L C D + D G P+VVT
Sbjct: 634 ISVLFREM-KEKGV--KPDNVFHTCMIDVHSKEENIVQALNCWDKMIAD-GCSPNVVTYT 689
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------------KG 163
V+ ++L K G + A L E M+ PN+ TYN +D A +G
Sbjct: 690 VLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEKAKVLHATILEG 749
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C + ++N LI G+CK ++ A+ L + G D +Y+T+ + V + +
Sbjct: 750 CLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAF 809
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + LYK
Sbjct: 810 QLWNEMLYK--------------------------------------------------- 818
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
GL PD+V YNI+I G+ K G+ DM
Sbjct: 819 --GLKPDIVAYNILIRWCNIHGEFDKGLGIYSDM 850
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 78/210 (37%), Gaps = 54/210 (25%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D Y Y I YC+ RN++ A L M S+G++ A YN L
Sbjct: 194 DEYVYTAGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVK 253
Query: 211 --MAINNVPPDSHVYTTY-----------------------------------IDGLYKN 233
M + D Y T +DGL K
Sbjct: 254 NSMVERGIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKR 313
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + +A ++ +G V + CN LID LCK R + A +F M N GL P+ VT
Sbjct: 314 GHIDKAFRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRG-MANRGLEPNEVT 372
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
Y I+IH CK G A + M E G+
Sbjct: 373 YAILIHSLCKRGMMDDALCMFDRMREKGIR 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S +L +L+ F PN T+N + L EG LE A++ + C N +TF
Sbjct: 699 GYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGE-LEKAKVLHATILEGCLANTVTF 757
Query: 62 NTL------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
NTL A + M N PD ++ + II+ LCK G M+
Sbjct: 758 NTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLY 817
Query: 106 QGMRPDVVTLNVM 118
+G++PD+V N++
Sbjct: 818 KGLKPDIVAYNIL 830
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 90/392 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
PN V+++ LI GLC GR+ EA L ++ C P+ T+ L A N
Sbjct: 263 APNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFN 322
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF+EM+ CKP+V T T +IDGLC+DG M+ + P V+T N + +
Sbjct: 323 LFDEMIPRG---CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
KDG++ A LL VM +R PN T+N LM+G K G
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------------- 209
D+ SYN+LI+G C++ ++ A L M I D T+ +
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFL 499
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNG------FVLEAM---------------------- 240
M + D TT IDG+ K G F+LE +
Sbjct: 500 GLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559
Query: 241 -------KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
+ I V ++ T L+DGL + G + ++ I LM+ G P+V
Sbjct: 560 CKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILE-LMKLSGCLPNVYP 618
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y I+I+G C+ G+ ++A LL M+++G+ PN
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPN 650
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 62/339 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF--KKLNV-FCCDPNVITFNT 63
+V R+ F M+ + +++ LC G EAA +F K L + F D ++ T
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYT-EAAEMFMSKILKIGFVLDSHIGTSLL 237
Query: 64 LALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
L AL +F+ M E V C P+ V+ + +I GLC+ G M ++
Sbjct: 238 LGFCRGLNLRDALKVFDVMSKE--VTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G +P T V+ L G +++A L + MI R GC+
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPR---------------------GCKP 334
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V++Y +LI+G C+D +E+A +CR+M+ + I TYN L
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNAL----------------- 377
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G K+G V+ A ++ + + C + T N L++GLC++G+ A + ++ N G
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-G 436
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+PD+V+YN++I G C+EG A LL M +EP+
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPD 475
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 176/399 (44%), Gaps = 84/399 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL R+L + +P++V++N LI GLC EG + A +L +N F +P+ +T
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLT 478
Query: 61 FNTLALVALNLF-----EEMVNEF-GVICKP----DVVTCTNIIDGLCKDG------FMM 104
F + +N F ++ + F G++ + D VT T +IDG+CK G F++
Sbjct: 479 FTAI----INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFIL 534
Query: 105 DQGMRPDVVT----LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+ ++ ++T LNV+ D LSK K++E +L + + + P+ TY TL+DG
Sbjct: 535 ETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRS 594
Query: 161 S--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC +VY Y I+ING C+ VE+A L M G+ + TY
Sbjct: 595 GDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654
Query: 207 NTLFMA-INNVPPDSHVYTTYI---------DGLYKN---GFVL---------------- 237
+ +NN D + T D +Y + GFVL
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDI 714
Query: 238 -----------EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
E + V +G C+ + C L+ LCK GR + D+ +++
Sbjct: 715 ALRETDPECINELISVVEQLGG--CISGL--CIFLVTRLCKEGRTDESNDLVQNVLERGV 770
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +I++ +C + +H K L+ + ++G P+
Sbjct: 771 FLEKAM--DIIMESYCSKKKHTKCMELITLVLKSGFVPS 807
>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 162/358 (45%), Gaps = 54/358 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +L S P+ +T+N++I G C EG++ +A + K+ P++ T
Sbjct: 243 GKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTC 302
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L AL LF +++ I D VT II GLCK+G
Sbjct: 303 NILLRGLCTEGMLDNALKLFNTWISKGKAI---DAVTYNTIISGLCKEGRFEEAFDLLAE 359
Query: 103 MMDQGMRPDVVTLNVMTDNLS-KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M ++ + PD T N + L+ +G++E+A M+++ P+ T N L+ G
Sbjct: 360 MEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEG 419
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W SKG D +YN +I+G CK+ E+A L EM +
Sbjct: 420 MLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEK---------- 469
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N + PD Y T I G + G V +A + + + + TCN L+ GLC+
Sbjct: 470 ------NGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCR 523
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A +F+ + + G D VTYN +I G CKEG+ ++A LL +M+E L P+
Sbjct: 524 EGMLVKALKLFNTWI-SKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPD 580
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 154/372 (41%), Gaps = 60/372 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + R+ PN++T N+LI L R K +V C I N
Sbjct: 150 RPHHAAQIFNRMKRLHLKPNLLTRNTLINAL---------VRYPSKPSV--CLSKAIFTN 198
Query: 63 TLALVALNLFEEMVNEFGVI----CKPDVVTCTNIID--GLCKDGF----------MMDQ 106
+ N E + G + C PD + I+D LC+ G +++
Sbjct: 199 VIKFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLES 258
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ P +T N + ++G++E+A M+++ P+ T N L+ G
Sbjct: 259 GLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNA 318
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
W SKG D +YN +I+G CK+ E+A L EM + + D TYN + A
Sbjct: 319 LKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCA 378
Query: 213 I-------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ + PD + GL G + A+K+F+ + +
Sbjct: 379 LADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAI 438
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N +I GLCK GR + A+D+ + + GL PD TYN +I G+C+EGQ +KA
Sbjct: 439 DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQF 498
Query: 314 LLDMEETGLEPN 325
M E +P+
Sbjct: 499 RNKMVEKSFKPD 510
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 55/286 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV--------ALNL 71
+ VT+N++I GLC EGR EA L ++ P+ T+N + AL A
Sbjct: 333 DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQF 392
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
+MV + KPD+ TC ++ GLC +G + + +G D VT N +
Sbjct: 393 RNKMVEK---SFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISG 449
Query: 122 LSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K+G+ EEA LL M +++ + P+ TYNT++ G+ K +
Sbjct: 450 LCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKP 509
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+++ NIL+ G C++ + A+ L +S+G DA TYNT+
Sbjct: 510 DLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTI----------------- 552
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
I GL K G EA + + + K T N ++ L GR++
Sbjct: 553 ISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRME 598
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 54/237 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F +++ F P++ T N L++GLCTEG + A +LF N + I
Sbjct: 384 GQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLF---NTWISKGKAI-- 438
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----------QGMRP 110
D VT II GLCK+G + G+ P
Sbjct: 439 ------------------------DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVP 474
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D T N + ++G++E+A M+++ P+ T N L+ G
Sbjct: 475 DQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLF 534
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
W SKG D +YN +I+G CK+ E+A L EM + + D TYN + A+
Sbjct: 535 NTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCAL 591
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 168/358 (46%), Gaps = 58/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE----- 73
P++ + ++ C +G++ EAA KK+ +PN++T+++L V+L E
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283
Query: 74 -EMVNEFGVICKPDVVTCTNIIDGLCKD-----------GFMMDQGMRPDVVTLNVMTDN 121
+ ++E GV +VVT T +I G CK G + + PD V+ D
Sbjct: 284 LKFMSEKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------- 166
+ GK+++A LL+ M++ + N N+L++G+ +G H
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYC--KRGEIHEAEGVITRMVDWNLK 399
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------------- 209
D YSYN L++GYC++ + +A +LC +ML EGI TYNTL
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M V PD Y+T +DGL+K A ++ I + T N +I GLCK
Sbjct: 460 WHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G++ A +IF M++ G +PD +TY +I G+CK +A + ME + P+
Sbjct: 520 MGKMVEAEEIFDK-MKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPS 576
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 165/388 (42%), Gaps = 82/388 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M G L IL FT + +TFN++I GLC G+++EA +F K+ C P+ IT
Sbjct: 485 MENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGIT 544
Query: 61 FNTL---------------------------------ALVALNLFE--------EMVNEF 79
+ TL +L++ LF+ +++ E
Sbjct: 545 YRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLIS-GLFKSRRLVEXTDLLTEM 603
Query: 80 GVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
G+ P++VT +IDG CK+G M + G+ +++ + M L + G++
Sbjct: 604 GIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663
Query: 129 EEANCLLEVMIQRDVNPN-------TCTYNTLMDGFAWWSKGCRHDVYS----YNILING 177
+EAN L++ M+ P+ Y + + C+ + YNI I G
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAG 723
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK V+DA R S +++ PD+ Y T I G G V
Sbjct: 724 LCKTGKVDDA----RRFFS-------------MLSLKGFVPDNFTYCTLIHGYSAAGNVD 766
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA ++ + V I T N LI+GLCK + A +FH L Q GL P+VVTYN +
Sbjct: 767 EAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQK-GLFPNVVTYNTL 825
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+CK G A L M E G+ P+
Sbjct: 826 IDGYCKIGNMDAAFKLKDKMIEEGISPS 853
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 155/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL +L N+ NSLI G C G I EA + ++ + P+ ++
Sbjct: 346 GKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSY 405
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL A NL ++M+ E G+ +P V+T ++ GLC+ G
Sbjct: 406 NTLLDGYCREGHTSEAFNLCDKMLQE-GI--EPTVLTYNTLLKGLCRVGAFDDALQIWHL 462
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
MM G+ PD V + + D L K E A+ L + ++ R + T+NT++ G K
Sbjct: 463 MMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGK 522
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC D +Y LI+GYCK NV A + M E I YN+
Sbjct: 523 MVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNS 582
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I GL+K+ ++E + + +G I T LIDG CK
Sbjct: 583 L-----------------ISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKE 625
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A+ + + +N GL+ +++ + M+ G + G+ +AN L+ M + G P+
Sbjct: 626 GMLDKAFSSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD 681
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 41/264 (15%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P + +C ++++ L K+G M+ G+ PDV +++M + KDGK++EA
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCK 180
++ M V PN TY++L++G+ KG +V +Y +LI GYCK
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+++A + R M E + PD Y IDG + G + +A+
Sbjct: 309 QCKMDEAEKVLRGMQEEAA----------------LVPDERAYGVLIDGYCRTGKIDDAV 352
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + CN LI+G CK G + A + M + L PD +YN ++ G
Sbjct: 353 RLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI-TRMVDWNLKPDSYSYNTLLDG 411
Query: 301 FCKEGQHQKANGLLLDMEETGLEP 324
+C+EG +A L M + G+EP
Sbjct: 412 YCREGHTSEAFNLCDKMLQEGIEP 435
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 36/210 (17%)
Query: 17 SCFT---PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
SC T PN + +N I GLC G++ +A R F L++ P+ T+ TL
Sbjct: 705 SCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLI-------- 756
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
G +V + D M+ +G+ P++VT N + + L K ++ A
Sbjct: 757 -----HGYSAAGNVDEAFRLRDE------MLRRGLVPNIVTYNALINGLCKSENVDRAQR 805
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
L + Q+ + PN TYNTL+DG+ +G V +Y+ LING C
Sbjct: 806 LFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLC 865
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K ++E ++ L +M+ G+ + Y TL
Sbjct: 866 KHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +L PN+VT+N+LI GLC + A RLF KL+ PNV+T+
Sbjct: 763 GNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTY 822
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPD 111
NTL IDG CK G M +++G+ P
Sbjct: 823 NTL-----------------------------IDGYCKIGNMDAAFKLKDKMIEEGISPS 853
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
VVT + + + L K G +E + LL MI+ V+ Y TL+ G
Sbjct: 854 VVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G A+ VF +G + ++ +CN L++ L K G A ++ +++ G+ PDV
Sbjct: 168 EKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIR-VGIVPDV 226
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IM++ FCK+G+ +A G + ME G+EPN
Sbjct: 227 FMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPN 260
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
P++V++N+++KGLC R L +++ C PN++TFNTL L LFE +
Sbjct: 262 PDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV 321
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 322 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 381
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+ EE LL M +D + T+N L+D F GC DV +
Sbjct: 382 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVIT 441
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING+CK+ +++AV L + M + G + P++ YT + GL
Sbjct: 442 YTTVINGFCKEGLIDEAVMLLKSMTACGCK-----------------PNTISYTIVLKGL 484
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++A + S + C L T N LI+ LCK G ++ A ++ ++ N G +PD
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN-GCSPD 543
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++Y+ +I G K G+ +A LL M G+ PN
Sbjct: 544 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 578
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 150/336 (44%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
TP++ + ++I G+C EG + A + ++ + PNV+ +NTL L + +EE
Sbjct: 331 TPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 390
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ F C D VT ++D C++G M++ G PDV+T + +
Sbjct: 391 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFC 450
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVY 169
K+G ++EA LL+ M PNT +Y ++ G W +GC +
Sbjct: 451 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI 510
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N LIN CK VE A+ L ++ML +N PD Y+T IDG
Sbjct: 511 TFNTLINFLCKKGLVEQAIELLKQML-----------------VNGCSPDLISYSTVIDG 553
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G EA+++ + + N + + L + GR+ +F + Q+ +
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI-QDTTIRS 612
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V YN +I CK G+ ++A L M +G PN
Sbjct: 613 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 648
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LNL 71
PN T+ +++ LC GRI +A + ++ C P ++ + A + +
Sbjct: 157 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 216
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
E++ C DV C +++ +C G + + G PDVV+ N +
Sbjct: 217 LEDL---HARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKG 273
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + L+E M++ PN T+NTL+ GC D
Sbjct: 274 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPD 333
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y +I+G CK+ ++E A + M S G++ + YNTL +
Sbjct: 334 IRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTL-----------------L 376
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL E ++ + + + C L T N L+D C+ G + ++ ++++ G
Sbjct: 377 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH-GC 435
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV+TY +I+GFCKEG +A LL M G +PN
Sbjct: 436 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 49/268 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K + C PN I++ T+ L L
Sbjct: 426 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY-TIVLKGL 484
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ ++ C + +T +I+ LCK G M+ G PD+
Sbjct: 485 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 544
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK +EA LL VM+ + ++PNT Y+++ + +
Sbjct: 545 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 604
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK E A+ M+S G P
Sbjct: 605 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCV-----------------P 647
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+ YT I GL GFV EA ++ + +
Sbjct: 648 NESTYTILIRGLASEGFVKEAQEMLTEL 675
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 135/334 (40%), Gaps = 74/334 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V +SLI+ LC GR EAAR V+ +N +
Sbjct: 96 VRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAM------------------- 133
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVVTLNVMTDNLSKDGKMEEANCLL 135
+ G C+ G ++ R P+ T + L G++ +A +L
Sbjct: 134 ----------VAGYCRAG-QLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVL 182
Query: 136 EVMIQRDVNPNTCTYNTLMD------GFA--------WWSKGCRHDVYSYNILINGYCKD 181
+ M +R P Y+ +++ GF ++GC DV + N+++N C
Sbjct: 183 DEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQ 242
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
+V++A+ L R++ S G D +YN + M PP+ +
Sbjct: 243 GSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 302
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I L +NG +V + + H C I +IDG+CK G L++A +I + M
Sbjct: 303 NTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNR-MP 361
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ GL P+VV YN ++ G C + ++ LL +M
Sbjct: 362 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 395
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 157/348 (45%), Gaps = 62/348 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--------FCCDPNVITF--------- 61
F+ N V++ LI GLC GR+ EA L + + F NV+ +
Sbjct: 138 FSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCR 197
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPD 111
N + EM+ GV P+ T ++I GLC +GF M+ +G+
Sbjct: 198 NGFVDEGFEFYNEMMGN-GVC--PNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVS 254
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
V V+ D L K+G + EA + + M+ R PN T LM G+
Sbjct: 255 VYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFD 314
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
A G + DV++YN+ I+GYCK V DAV + EM EG+ + TYN+L
Sbjct: 315 AIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSL-------- 366
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
ID L K G V A ++ + I TC L+DGLCK RL A +
Sbjct: 367 ---------IDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILL 417
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F+ L+++ GLTPDV +Y I+IHG C + +A LL DM L P+
Sbjct: 418 FNQLVES-GLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPH 464
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 160/357 (44%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF ++ + PN T+ SLI+GLC G+ LE L ++ D +V F
Sbjct: 199 GFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVF 258
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + + A +F+EMVN +P++VTCT ++ G C G
Sbjct: 259 TVLIDGLCKNGMLVEAREMFDEMVNRG---YEPNIVTCTALMGGYCLKGNVDMARELFDA 315
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ + G + DV T NV K G++ +A + + M + V PN TYN+L+D
Sbjct: 316 IGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE 375
Query: 158 ---AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
AW G D+ + IL++G CK + ++ A+ L +++ G+
Sbjct: 376 VSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL--------- 426
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD YT I G + + EAM + + V I T +CLIDGLC+
Sbjct: 427 --------TPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ AW + + M G PD +TY+I++ K+ +A L M + GLEP+
Sbjct: 479 GRISNAWRLLNE-MHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPD 534
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 164/358 (45%), Gaps = 54/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ GF L+ ++ ++ F LI GLC G ++EA +F ++ +PN++T
Sbjct: 233 VGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVT 292
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
L +A LF+ + E+G K DV T I G CK G + D
Sbjct: 293 CTALMGGYCLKGNVDMARELFDA-IGEWGF--KRDVWTYNVFIHGYCKVGRVRDAVRVFD 349
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ P++VT N + D L K G++ A +++ M + + P+ T L+DG
Sbjct: 350 EMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSK 409
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G DV+SY ILI+G C R + +A++L R+
Sbjct: 410 RLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRD-------------- 455
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + N+ P Y+ IDGL ++G + A ++ + + + T + L+D L K
Sbjct: 456 ---MHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWK 512
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +F+ +++ GL PDV+ Y IMI G+CK + +A L +M L P+
Sbjct: 513 KQHLDEAVFLFNQMIKR-GLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPD 569
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 64/328 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ PN+VT +L+ G C +G + A LF + + +V T+N A+
Sbjct: 286 YEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAV 345
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
+F+EM E GV+ P++VT ++ID LCK G M G+ PD+VT ++
Sbjct: 346 RVFDEMCRE-GVV--PNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILL 402
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D L K ++++A L +++ + P DV+SY ILI+G C
Sbjct: 403 DGLCKSKRLDQAILLFNQLVESGLTP---------------------DVWSYTILIHGCC 441
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
R + +A++L R+M + + TY+ L M + PD+
Sbjct: 442 TSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTI 501
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-M 280
Y+ +D L+K + EA+ +F+ + + +IDG CK R+ A ++F M
Sbjct: 502 TYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREM 561
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
M+N L PD+VTY I+ + K G +
Sbjct: 562 HMKN--LVPDIVTYTILFNAVFKSGSNS 587
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 43/241 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G SG + ++ + S TP++VT L+ GLC R+ +A LF +L P+V ++
Sbjct: 374 GEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSY 433
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A+NL +M + V P +VT + +IDGLC+ G
Sbjct: 434 TILIHGCCTSRRMGEAMNLLRDMHLKNLV---PHIVTYSCLIDGLCRSGRISNAWRLLNE 490
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G PD +T +++ D L K ++EA L MI+R + P
Sbjct: 491 MHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEP----------------- 533
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
DV Y I+I+GYCK +++A++L REM + + D TY LF A+ +S+
Sbjct: 534 ----DVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAVFKSGSNSYE 589
Query: 223 Y 223
+
Sbjct: 590 W 590
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ T + GL NG VL+A++ I N+ L + LI+GLC+ GR+ A ++
Sbjct: 106 DTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLL 165
Query: 279 HMLMQNPGLTPD-------VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ + D VV Y+I+I C+ G + +M G+ PN
Sbjct: 166 RMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPN 219
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 57/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F ++ + + P++ T+N LI GLC G + E L + P+V+T
Sbjct: 288 LGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVT 347
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+NTL +L A L E+M N+ GV K + VT + LCK+
Sbjct: 348 YNTLIDGCFELGLSLEARKLMEQMEND-GV--KANQVTHNISLKWLCKEEKREAVTRKVK 404
Query: 102 FMMD-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
++D G PD+VT + + K G + A ++ M Q+ + NT T NT++D
Sbjct: 405 ELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ +G D +Y LI G+ ++ VE A+ + EM I +T+
Sbjct: 465 RKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTF 524
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N+L +A + + PD + + I G K G V +A + ++
Sbjct: 525 NSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIK 584
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
H TCN L++GLCK G + A + F+ L++ + D VTYN MI FCK+ + +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLK 642
Query: 309 KANGLLLDMEETGLEPN 325
+A LL +MEE GLEP+
Sbjct: 643 EAYDLLSEMEEKGLEPD 659
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 167/379 (44%), Gaps = 60/379 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLC---TEGRILEAARLFKKLNVFCCDPNV 58
G+ + +++ PN++T N+L+ GL + I A +F + NV
Sbjct: 145 GKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNV 204
Query: 59 ITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---- 105
TFN L AL + E MV+EF V PD VT I+ + K G + D
Sbjct: 205 QTFNVLVNGYCLEGKLEDALGMLERMVSEFKV--NPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 106 ------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
G+ P+ VT N + K G ++EA ++E+M Q +V P+ CTYN L++G
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVE-DAVSLCREMLSEGIRADAT 204
A S + DV +YN LI+G C + + +A L +M ++G++A+
Sbjct: 323 AGSMREGLELMDAMKSLKLQPDVVTYNTLIDG-CFELGLSLEARKLMEQMENDGVKANQV 381
Query: 205 TYN-------------------TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
T+N + ++ PD Y T I K G + A+++
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+G + T N ++D LCK +L A ++ + + G D VTY +I GF +E
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR-GFIVDEVTYGTLIMGFFREE 500
Query: 306 QHQKANGLLLDMEETGLEP 324
+ +KA + +M++ + P
Sbjct: 501 KVEKALEMWDEMKKVKITP 519
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 57/342 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------------VA 68
P+ F+ + EG+ A ++F+K+ PN++T NTL + A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-GM----------RPDVVTLNV 117
+F++MV + GV +V T +++G C +G + D GM PD VT N
Sbjct: 189 REVFDDMV-KIGVSL--NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNT 245
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ +SK G++ + LL M + + PN TYN L+ G+
Sbjct: 246 ILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN 305
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
D+ +YNILING C ++ + + L M S ++ D TYNTL
Sbjct: 306 VLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTL-------------- 351
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG ++ G LEA K+ + N T N + LCK + + L+
Sbjct: 352 ---IDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVD 408
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD+VTY+ +I + K G A ++ +M + G++ N
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMN 450
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 128/311 (41%), Gaps = 43/311 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG ++ + N +T N+++ LC E ++ EA L + + +T
Sbjct: 429 VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVT 488
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL + AL +++EM V P V T ++I GLC G
Sbjct: 489 YGTLIMGFFREEKVEKALEMWDEMKK---VKITPTVSTFNSLIGGLCHHGKTELAMEKFD 545
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+ + G+ PD T N + K+G++E+A I+ P+ T N L++G
Sbjct: 546 ELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN- 207
F + D +YN +I+ +CKD+ +++A L EM +G+ D TYN
Sbjct: 606 MTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNS 665
Query: 208 --TLFMAINNVPPDSHVYTTYID--GLYKNGFVLEAMKVFSAIGNHKCVLTIETC--NCL 261
+L M + + + G K +E K A K L E + +
Sbjct: 666 FISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVETEKN-PATSESKEELNTEAIAYSDV 724
Query: 262 IDGLCKIGRLK 272
ID LC GRLK
Sbjct: 725 IDELCSRGRLK 735
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 162/356 (45%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
PN+ T+ I+ L +G+I EA R+ K+++ C P+V+T+ L AL A+ L
Sbjct: 262 PNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCL 321
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F +M + KPD VT ++D G M G PDVVT ++ +
Sbjct: 322 FTKMKSSSH---KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNA 378
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K G++ EA LL+ M ++ V PN TYNTL+ G ++ G
Sbjct: 379 LCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPT 438
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
Y+Y +LI+ + K + A+ +M + GI + N ++
Sbjct: 439 AYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFN 498
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ + PDS Y + K G V EA+K+ S + +C + N LID L K G
Sbjct: 499 ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAG 558
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ AW +F M+ L P VVTYNI++ G KEGQ QKA L M G PN
Sbjct: 559 RVEEAWQMF-CRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPN 613
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 152/349 (43%), Gaps = 56/349 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---------ALVALNLFEEMVNE 78
+IK LC + A +F K P + +N L VA NLFEEM +
Sbjct: 760 IIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKS- 818
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
C PD T ++ID K G M+ +G +P+ +T N++ NL K ++
Sbjct: 819 --AGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRL 876
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
++A L ++ D +P CT+ L+DG + GCR + YNIL
Sbjct: 877 DKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNIL 936
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
+NGY K +V+ A + M+ EGIR D +Y L + +
Sbjct: 937 VNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGL 996
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y I+GL ++ EA+ +F + N V + T N LI L +G ++ A
Sbjct: 997 DPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGK 1056
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+ L Q GL P+V TYN +I G+ G + A G+ M G +PN
Sbjct: 1057 IYEEL-QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 172/411 (41%), Gaps = 91/411 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + R+ P +VT+N L+ GL EG+I +A +LF+ +N C PN ITF
Sbjct: 558 GRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITF 617
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
NTL +AL +F +M + C+PDV+T II G K
Sbjct: 618 NTLLDCLCKNDEVDLALKMFYKMTT---MNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQ 674
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE-VMIQRDVNPNTCTYNTLMDG------ 156
M + +RPD VTL + + K G++E+A + E Q N + + +M G
Sbjct: 675 MKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAG 734
Query: 157 ------------------------------------------FAWWSK--GCRHDVYSYN 172
F ++K G + + YN
Sbjct: 735 TEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYN 794
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------INNV---------- 216
+LI+G+ + NVE A +L EM S G D TYN+L A IN +
Sbjct: 795 LLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTR 854
Query: 217 --PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P++ Y I L K+ + +AM ++ + + T T LIDGL K GRL A
Sbjct: 855 GCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDA 914
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F M + G P+ YNI+++G+ K G A M + G+ P+
Sbjct: 915 HEMFDG-MVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPD 964
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 57/360 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + + S P+ VT+N ++K G++ EA +L +++ C+P+VI
Sbjct: 487 MGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIV 546
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
N+L L EE F C+ M + + P VVT N++
Sbjct: 547 INSLIDTLYKAGRVEEAWQMF---CR------------------MEEMNLAPTVVTYNIL 585
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------------GFAWWSKGC 164
L K+G++++A L E M +PNT T+NTL+D + + C
Sbjct: 586 LAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNC 645
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
R DV ++N +I+G+ K +++A+ L +M + +R D T TL + +
Sbjct: 646 RPDVLTFNTIIHGFIKQNQIKNAIWLFHQM-KKLLRPDHVTLCTLLPGVIKSGQIEDAFR 704
Query: 225 TYIDGLYKNG------FVLEAM-KVFSAIGNHKCVLTIETCNC------------LIDGL 265
D Y+ G F + M + + G K +L E C +I L
Sbjct: 705 ITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVL 764
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK + +A ++F + G+ P + YN++I GF + + A L +M+ G P+
Sbjct: 765 CKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPD 824
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 146/342 (42%), Gaps = 55/342 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + F LL + PN+ T+N+LI GL R+ +A LF + +P T+
Sbjct: 383 GRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTY 442
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
L AL FE+M G+ P++V C + L + G + +
Sbjct: 443 ILLIDYHGKSGHPGKALETFEKMKAR-GI--APNIVACNASLYSLAEMGRLGEAKAMFNE 499
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G+ PD VT N+M SK G+++EA LL M + P+ N+L+D
Sbjct: 500 LKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGR 559
Query: 158 --AWWSKGCRHD-------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W CR + V +YNIL+ G K+ ++ AV L M G + T+NT
Sbjct: 560 VEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNT 619
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L KN V A+K+F + C + T N +I G K
Sbjct: 620 L-----------------LDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQ 662
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++K A +FH + + L PD VT ++ G K GQ + A
Sbjct: 663 NQIKNAIWLFHQMKKL--LRPDHVTLCTLLPGVIKSGQIEDA 702
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 154/382 (40%), Gaps = 87/382 (22%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L ++ + F N ++N LI L G EA +++++ P++ TF+ L + +
Sbjct: 182 LEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGK 241
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+ ++ T +++ M G+RP++ T + L +DGK++E
Sbjct: 242 -------------RRNIKTVMGLLEE------MESMGLRPNIYTYTICIRVLGRDGKIDE 282
Query: 131 AN-----------------------------------CLLEVMIQRDVNPNTCTYNTLMD 155
A CL M P+ TY TL+D
Sbjct: 283 AYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLD 342
Query: 156 GFA----------WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
F+ W++ G DV ++ IL+N CK + +A L M +G+
Sbjct: 343 KFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLP 402
Query: 202 DATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+ TYNTL M V P ++ Y ID K+G +A++ F
Sbjct: 403 NLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETF 462
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ I CN + L ++GRL A +F+ L ++ GL PD VTYN+M+ + K
Sbjct: 463 EKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNEL-KSSGLAPDSVTYNMMMKCYSK 521
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
GQ +A LL +M + EP+
Sbjct: 522 VGQVDEAIKLLSEMSKVQCEPD 543
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 150/367 (40%), Gaps = 56/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++ S P+ VT+ +L+ G + + +++ ++ P+V+TF L
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALC 380
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
A +L + M + GV+ P++ T +I GL + + D G+ P
Sbjct: 381 KAGRINEAFDLLDTMRKQ-GVL--PNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEP 437
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
T ++ D K G +A E M R + PN N + A
Sbjct: 438 TAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMF 497
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
S G D +YN+++ Y K V++A+ L EM D N+L
Sbjct: 498 NELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKA 557
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N+ P Y + GL K G + +A+++F ++ H C T
Sbjct: 558 GRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITF 617
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L+D LCK + +A +F+ M PDV+T+N +IHGF K+ Q + A L M+
Sbjct: 618 NTLLDCLCKNDEVDLALKMFYK-MTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK 676
Query: 319 ETGLEPN 325
+ L P+
Sbjct: 677 KL-LRPD 682
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 48/305 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN 77
P+ T+NSLI G+I E L+ ++ C PN IT+N + LV N ++ ++
Sbjct: 822 APDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMD 881
Query: 78 EFGVICKPDV--VTCT--NIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLS 123
+ + D CT +IDGL K G + D G RP+ N++ +
Sbjct: 882 LYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYG 941
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWSK----GCRHDVY 169
K G ++ A + M++ + P+ +Y L+D ++ K G D+
Sbjct: 942 KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN++ING + + E+A+SL EM + GI D TYN+L + + V
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV------------- 1048
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
G + EA K++ + + T N LI G G ++A+ I+ +M G P
Sbjct: 1049 ----GMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVG-GCDP 1103
Query: 290 DVVTY 294
+ T+
Sbjct: 1104 NTGTF 1108
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P TF LI GL GR+ +A +F + + C PN +N L A
Sbjct: 891 FSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTAC 950
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
F+ MV E G+ +PD+ + T ++D LC G + D G+ PD+V N+M
Sbjct: 951 EFFKRMVKE-GI--RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMI 1007
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCR 165
+ L + + EEA L M R + P+ TYN+L+ + + + G +
Sbjct: 1008 NGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+V++YN LI GY N E A + ++M+ G + T+ L
Sbjct: 1068 PNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R++ P++ ++ L+ LC GR+ +A F+KL DP+++ +N
Sbjct: 955 RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL--------- 1005
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
M+N G + + + L M ++G+ PD+ T N + NL G +EEA
Sbjct: 1006 --MINGLGRSQRTE--------EALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAG 1055
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF 157
+ E + + PN TYN L+ G+
Sbjct: 1056 KIYEELQFIGLKPNVFTYNALIRGY 1080
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 156/362 (43%), Gaps = 56/362 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L +++ +P + T+ +I GL GR+ EA R+F + C P+ +
Sbjct: 125 GRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVY 184
Query: 62 NTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------ 103
L ALV LN E GV +PDVV +I LC G +
Sbjct: 185 TALISGLAKIGKLDEALVYLNQMVENGCARGV--EPDVVIHNLVIRQLCASGNLEDALAY 242
Query: 104 ---MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
+D + T N + L K + EEA ++ M +R P TY +L+DGF
Sbjct: 243 FDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKL 302
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+G D +Y +I+G CK VE+ EM + G DA TY
Sbjct: 303 GRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTY 362
Query: 207 NTL---FMAINNVPPDSHVY------------TTY---IDGLYKNGFVLEAMKVFSAIGN 248
L FM +P VY TY +DGL K G V EA F A+
Sbjct: 363 AALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEE 422
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
CV T+ T + L+DG C G + A ++F ++ + G P++V+YNI+I G C+ G+
Sbjct: 423 RGCVATVVTYSALMDGFCSEGNVSAAVELFRRML-DRGCEPNLVSYNIIIRGLCRAGKLA 481
Query: 309 KA 310
KA
Sbjct: 482 KA 483
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 169/412 (41%), Gaps = 93/412 (22%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F +L R + + P+ VT+N I GLC R+ +A +L KK++ C P +T+
Sbjct: 56 RLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYT 115
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L L+ A+ + E+MV + P + T T +IDGL K G M
Sbjct: 116 ALVDGLLKAGRLDEAMAILEQMVEKGN---SPTLKTYTVVIDGLSKAGRVEEARRIFVDM 172
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ----RDVNPNT----------CT 149
+ G RPD + L+K GK++EA L M++ R V P+ C
Sbjct: 173 LGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCA 232
Query: 150 YNTLMDGFAWW--------------------------------------SKGCRHDVYSY 171
L D A++ + C +++Y
Sbjct: 233 SGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTY 292
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
L++G+ K +++A+ +E + G DA TY ++ M
Sbjct: 293 TSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN 352
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD+ Y IDG K + +A +V+ + V++ T N ++DGLCK GR+
Sbjct: 353 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAE 412
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ F + M+ G VVTY+ ++ GFC EG A L M + G EPN
Sbjct: 413 AYATF-LAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 463
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 158/359 (44%), Gaps = 57/359 (15%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75
M C +P+MV F +I GLC E R+ EA + ++ C+P+ +T+N + L E +
Sbjct: 35 MPC-SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVF-IDGLCKAERV 92
Query: 76 VNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
+ F ++ C P VT T ++DGL K G M+++G P + T V+
Sbjct: 93 DDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVV 152
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------------- 162
D LSK G++EEA + M+ P+ Y L+ G A K
Sbjct: 153 IDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGC 212
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--- 217
G DV +N++I C N+EDA++ E L + + T+N L A+
Sbjct: 213 ARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVAALCKAERTE 271
Query: 218 ---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
P YT+ +DG K G + EA+ + T +I
Sbjct: 272 EAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSII 331
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
DGLCK+GR++ + FH M+N G PD VTY +I GF K KA+ + M ++G
Sbjct: 332 DGLCKLGRVEEGCERFHE-MRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 389
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 147/333 (44%), Gaps = 51/333 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI 82
TFN L+ LC R EA KK++ C P + T+ +L + L +E + +
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315
Query: 83 CK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ PD VT T+IIDGLCK G M ++G PD VT + D K +
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
+A+ + M+Q +T TYN ++DG A +GC V +Y+ L
Sbjct: 376 PKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSAL 435
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
++G+C + NV AV L R ML G + +YN + I GL + G
Sbjct: 436 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNII-----------------IRGLCRAG 478
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVV 292
+ +A F + + + T N + GLC+ RL D + M + G +P++
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQ--RLDTVGDGVELFESMVSQGTSPNLH 536
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+Y+I++ G C+ G + + +M G+ P+
Sbjct: 537 SYSILMDGICRAGGLEVTLEIFHEMVSRGVAPD 569
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 148/359 (41%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + L + F P+ VT+ S+I GLC GR+ E F ++ +P+ +T
Sbjct: 302 LGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVT 361
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A ++ +M+ V+ VT I+DGLCK G
Sbjct: 362 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVV---STVTYNIILDGLCKAGRVAEAYATFL 418
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M ++G VVT + + D +G + A L M+ R PN +YN ++ G
Sbjct: 419 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478
Query: 162 KGCRH--------------DVYSYNILINGYCKDRN-VEDAVSLCREMLSEGIRADATTY 206
K + DVY++N ++G C+ + V D V L M+S+G
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQG-------- 530
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
P+ H Y+ +DG+ + G + +++F + + + N LI LC
Sbjct: 531 ---------TSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLC 581
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++F L + PD +Y ++ + + ++A L M+ G P
Sbjct: 582 IAGRVDEALEVFRELERRSA--PDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPR 638
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 119/260 (45%), Gaps = 43/260 (16%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGM--------RPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
D CT +++GLCK G +D+ M PD+V V+ + L ++ +++EA +LE
Sbjct: 8 DTRVCTALLNGLCKTG-QLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLER 66
Query: 138 MIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRN 183
++ P+ TYN +DG K C +Y L++G K
Sbjct: 67 AVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGR 126
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+++A+++ +M+ +G N+ P YT IDGL K G V EA ++F
Sbjct: 127 LDEAMAILEQMVEKG--------NS---------PTLKTYTVVIDGLSKAGRVEEARRIF 169
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGLTPDVVTYNIMIHG 300
+ + C LI GL KIG+L A + +++N G+ PDVV +N++I
Sbjct: 170 VDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQ 229
Query: 301 FCKEGQHQKANGLLLDMEET 320
C G + A +++++
Sbjct: 230 LCASGNLEDALAYFDELDDS 249
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 124/323 (38%), Gaps = 81/323 (25%)
Query: 83 CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C PD+V T +I+GLC++ + + G PD VT NV D L K ++++A
Sbjct: 37 CSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 96
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
LL+ M ++ P T TY L+DG KG + +Y ++I+G
Sbjct: 97 QLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGL 156
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------------NNV 216
K VE+A + +ML G R DA Y L + V
Sbjct: 157 SKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGV 216
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI------------------------------ 246
PD ++ I L +G + +A+ F +
Sbjct: 217 EPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAF 276
Query: 247 ----GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+C T+ T L+DG K+GRL A ++ G PD VTY +I G C
Sbjct: 277 VKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVER-GFIPDAVTYTSIIDGLC 335
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K G+ ++ +M G EP+
Sbjct: 336 KLGRVEEGCERFHEMRNRGYEPD 358
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
C L++GLCK G+L A +L+ +PD+V + ++I+G C+E + +A +L
Sbjct: 10 RVCTALLNGLCKTGQLDRAM----LLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLE 65
Query: 316 DMEETGLEPN 325
G EP+
Sbjct: 66 RAVRAGCEPD 75
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 159/352 (45%), Gaps = 52/352 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN+ T+N L+K LC R+ A +LF +++ C P+ +T+ T+ ++ E+
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
F KP V +IDG+CK+G MMD G+ P+VV+ + + ++L
Sbjct: 237 AGRF----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKGCRHDVYSY 171
G +E A L M R + N T+ L+ G W GC +V +Y
Sbjct: 293 GNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N LI+G C + ++E+A+ +C +M G + TTY+ L M
Sbjct: 353 NTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS 412
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P+ YT +D L KN +A + + C T N I GLC GR++
Sbjct: 413 HGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEW 472
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + MQ G P++ TYN ++ + ++++A GL ++E L+PN
Sbjct: 473 AMKLLER-MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 162/347 (46%), Gaps = 54/347 (15%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLAL- 66
R L F P++ +N+LI G+C EGRI A +L ++ DPNV+++ N+L +
Sbjct: 233 ARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS 292
Query: 67 ----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
+A LF +M F C ++ T T +I G G M+ G P+V
Sbjct: 293 GNVELAFALFAQM---FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNV 349
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW-- 160
V N + L +G +EEA + + M + PN TY+ L+DGFA W
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNR 409
Query: 161 --SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
S GCR +V +Y +++ CK+ + A SL +M EG + T+N
Sbjct: 410 MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN----------- 458
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
T+I GL NG V AMK+ + H C+ I T N L+D L ++ + + A+ +F
Sbjct: 459 ------TFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLF 512
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + L P++VTYN +++GF + G +A L G P+
Sbjct: 513 QEI-EARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPD 558
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 157/375 (41%), Gaps = 54/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LLG ++ + PN+V+++ +I LC G + A LF ++ + CD N+ TF
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L AL+L++ M+ + C+P+VV +I GLC +G
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQDG---CEPNVVAYNTLIHGLCSNGSLEEALQVCDQ 374
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M G P+V T +++ D +K G + A+ MI PN TY ++D S
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+GC + ++N I G C + VE A+ L M G + TTYN
Sbjct: 435 FDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ N+ P+ Y T + G + G + EA+++F
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG 554
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T N +I CK G++KIA + + PD++TY +I G C ++A
Sbjct: 555 TAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEA 614
Query: 311 NGLLLDMEETGLEPN 325
L G+ PN
Sbjct: 615 MAFLDKAINQGICPN 629
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 163/371 (43%), Gaps = 50/371 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G A + RI P + +N L+ L +E + L+ + PNV T
Sbjct: 122 VGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFT 181
Query: 61 FNTL--AL-------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+N L AL A LF EM N+ C PD VT T ++ LCK G + D
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKG---CPPDAVTYTTMVSSLCKAGKIDDARELAG 238
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------G 156
+P V N + D + K+G++E A LL M+ V+PN +Y+ +++
Sbjct: 239 RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELA 298
Query: 157 FAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
FA ++ +GC +++++ LI G + +A+ L + M+ +G + YNTL
Sbjct: 299 FALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHG 358
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + P+ Y+ IDG K+G ++ A + ++ + +H C
Sbjct: 359 LCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPN 418
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T C++D LCK A + M G TP+ +T+N I G C G+ + A LL
Sbjct: 419 VVTYTCMVDVLCKNSMFDQANSLVEK-MTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLL 477
Query: 315 LDMEETGLEPN 325
M+ G PN
Sbjct: 478 ERMQGHGCLPN 488
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 38/217 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ ++ + TPN +TFN+ IKGLC GR+ A +L +++ C PN+ T+N L AL
Sbjct: 441 LVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALF 500
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVV 113
+N +EE F I +P++VT ++ G + G M + +G PD +
Sbjct: 501 RMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSI 560
Query: 114 TLNVMTDNLSKDGKMEEANCLLE-VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172
T N M K GK++ A L+E V ++ +P D+ +Y
Sbjct: 561 TYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP---------------------DIITYT 599
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
LI G C N+E+A++ + +++GI + T+N L
Sbjct: 600 SLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNAL 636
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
E L D Y M ++ + ++ I+G + G +A+K+F IG C
Sbjct: 82 ERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCK 141
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T+ N L+D L + ++ + + M+ GL P+V TYNI++ CK + A+
Sbjct: 142 PTVRIYNHLLDALLSENKFQMI-NPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHK 200
Query: 313 LLLDMEETGLEPN 325
L ++M G P+
Sbjct: 201 LFVEMSNKGCPPD 213
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 40/168 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F L I PN+VT+N+++ G G + EA +LF K V P+ IT
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561
Query: 61 FNTL---------ALVALNLFEEM--VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR 109
+NT+ +A L E + + E+ PD++T T++I G C
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEW----HPDIITYTSLIWGAC----------- 606
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
N M +EEA L+ I + + PN T+N L+ F
Sbjct: 607 ------NWMN--------IEEAMAFLDKAINQGICPNFATWNALVRCF 640
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 138/320 (43%), Gaps = 47/320 (14%)
Query: 52 FCCDPNVITFNTLALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDGF----- 102
+ P + + L E+ V G C ++ID K G+
Sbjct: 50 YILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKAL 109
Query: 103 -----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG- 156
M G+RPD T NV+ + K +++ L E M ++ +PN TY+ L+D
Sbjct: 110 AVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAV 169
Query: 157 -------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
S+GCR ++++Y +I+G K +V+ A L EM SEG+ A
Sbjct: 170 CKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATR 229
Query: 204 TTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
YN+L M + PD +T+ + GL G EA ++F
Sbjct: 230 VVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ C L + N LID LCK RL AW+IF L ++ GL PDV T+N ++ G CK G
Sbjct: 290 ARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEED-GLVPDVYTFNALMDGLCKSG 348
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ A LL DM+ G P+
Sbjct: 349 RIHDAFILLGDMKRAGCTPD 368
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 54/339 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALV 67
S P+ TFN L+ R+ +LF+++ C PNVIT++ L
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEK 177
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
AL +F +M + C+P++ T T++IDGL K G M +G+ V N
Sbjct: 178 ALKVFLDMKSRG---CRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ L + G+ + A L M+ + + P+ T+ +L+ G + G
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C DV YN+LI+ CK + +++A + E+ +G+ D T+N L
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNAL-------------- 340
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+DGL K+G + +A + + C + N LIDGL K GR++ A + + MQ
Sbjct: 341 ---MDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLL-LEMQ 396
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ G PDVVTYN +I CK G+ + A L ++ G
Sbjct: 397 SLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF 435
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 155/350 (44%), Gaps = 62/350 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
+PN++T++ LI +C G + +A ++F + C PN+ T+ ++ A
Sbjct: 156 SPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFF 215
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LFEEM +E V + V ++I GL + G M+ +G++PD VT +
Sbjct: 216 LFEEMTSEGLVATR---VVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVY 272
Query: 121 NLSKDGKMEEANCLLEVMIQRDVN--PNTCTYNTLMDGF--------AW------WSKGC 164
L G+ EA + + RDV + YN L+D AW G
Sbjct: 273 GLGVAGRASEARRIFQE--ARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGL 330
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
DVY++N L++G CK + DA L +M G D T YNTL +
Sbjct: 331 VPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQ 390
Query: 216 ---------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PD Y T ID K G + +A+++F I T+ T N +++GLC
Sbjct: 391 LLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTV-TYNTILNGLC 449
Query: 267 KIGRLKIAWDIFHMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
GR+ A+ +F+ + Q + + PD VTY +++G + G + AN L
Sbjct: 450 MAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F+LLG + + TP++ +N+LI GL GR+ EA +L ++ +P+V+T+
Sbjct: 348 GRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTY 407
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQG 107
NTL AL LFEE+ + + VT I++GLC G + + G
Sbjct: 408 NTLIDESCKGGRIEDALRLFEEISAK----GFANTVTYNTILNGLCMAGRVDEAYKLFNG 463
Query: 108 MR---------PDVVTLNVMTDNLSKDGKMEEANCL 134
M+ PD VT + + + G E AN L
Sbjct: 464 MKQETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 178/399 (44%), Gaps = 84/399 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G AS G LLG++ PN V +N+LI C EG+ +A +L K+ P+V TF
Sbjct: 196 GLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETF 255
Query: 62 NTLA---------LVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
N+ L A +F +M ++E + P+V+T ++ G CK+G
Sbjct: 256 NSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVD 315
Query: 103 ------------------------------------MMDQGMRPDVVTLNVMTDNLSKDG 126
M+ G+ PD+ + N++ D L K+G
Sbjct: 316 TMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNG 375
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG----------------CRHDVYS 170
+ +A L+ +MI+ + P+T TY+TL+ G+ SKG C + Y+
Sbjct: 376 MLSDARMLMGLMIRNGILPDTVTYSTLLHGYC--SKGKVFEANNLLHEMISNNCSPNTYT 433
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-NNVPPDSHVYTTYIDG 229
N+L++ K+ + +A +L ++M +G D T N + A+ NN D + ++G
Sbjct: 434 CNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAI--EIVNG 491
Query: 230 LYKNGFVLEAMKVFSAIG-------NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
++ +G S IG KC + T + +I GLCK GRL A F + M
Sbjct: 492 MWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKF-IEM 550
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ GL PD Y+ IH FC+EG+ A +L DME+ G
Sbjct: 551 MSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRG 589
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/441 (24%), Positives = 177/441 (40%), Gaps = 125/441 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPN 57
G+ L+ ++ P++ TFNS I LC G+ILEA+R+F+ + + PN
Sbjct: 231 GKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPN 290
Query: 58 VITF--------------------------------------------NTLALVALNLFE 73
VIT+ N L A + +
Sbjct: 291 VITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLK 350
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLS 123
EM+ G+ +PD+ + ++DGLCK+G + D G+ PD VT + +
Sbjct: 351 EML---GIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYC 407
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------------KGCRHD 167
GK+ EAN LL MI + +PNT T N L+ W KG D
Sbjct: 408 SKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSL--WKEGRISEAENLLQKMNEKGYGVD 465
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA-----------------------DAT 204
+ NI+IN C + ++ A+ + M + G A D
Sbjct: 466 TVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLV 525
Query: 205 TYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
TY+T+ M + PDS +Y T+I + G + A +V +
Sbjct: 526 TYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDM 585
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKE 304
C T++T N LI GL G ++++ ++ M+ G++PDV TYN M++ C+
Sbjct: 586 EKRGCNKTLQTYNSLILGL---GSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEG 642
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G+ A +L +M + G+ PN
Sbjct: 643 GRINDAPSVLDEMLQKGISPN 663
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 108/423 (25%), Positives = 167/423 (39%), Gaps = 113/423 (26%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------L 64
++++ +P TFN LI LC G + +A LF K+ C+PN TF L
Sbjct: 138 MVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGL 197
Query: 65 ALVALNLFEEMVNEFGVI-------------CK--------------------PDVVTCT 91
A L L +M G++ CK P V T
Sbjct: 198 ASKGLELLGQM-RTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFN 256
Query: 92 NIIDGLCKDGFMMDQGM--------------RPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+ I LC G +++ P+V+T +M K+G +EEA L++
Sbjct: 257 SRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDT 316
Query: 138 MIQRDVN-PNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILINGYCKDR 182
M +R+ N N +YN + G AW G D+YSYNI+++G CK+
Sbjct: 317 M-KRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNG 375
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
+ DA L M+ GI D TY+TL M NN P+++
Sbjct: 376 MLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCN 435
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--- 281
+ L+K G + EA + + + TCN +I+ LC G+L A +I + +
Sbjct: 436 VLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTH 495
Query: 282 -------------------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ TPD+VTY+ +I G CK G+ A ++M GL
Sbjct: 496 GSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGL 555
Query: 323 EPN 325
+P+
Sbjct: 556 QPD 558
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 59/307 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
P+ +++ I C EG+I A ++ K + C+ + T+N+L L
Sbjct: 555 LQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLIL------------ 602
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G+ K + +ID M ++G+ PDV T N M + L + G++ +A +L+ M
Sbjct: 603 -GLGSKNQIFELYGLIDE------MREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEM 655
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+Q+ ++PN + S+ ILI +CK + +
Sbjct: 656 LQKGISPN---------------------ISSFRILIKAFCKACDFK------------- 681
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
++ +A+N +YT + L G V EA ++F + +
Sbjct: 682 -----ASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLY 736
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
LID LCK +L+ A D+ H L+ + G D ++ +I GF K G A+ L M
Sbjct: 737 KDLIDRLCKDEKLEAASDVLHRLI-DKGYQFDPASFMPVIDGFGKMGNKHVADELAERMM 795
Query: 319 ETGLEPN 325
E E N
Sbjct: 796 EMASESN 802
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 34/230 (14%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFA 158
+P + NV+ + ++ ++E + L + M+ V+P T+N L+ D
Sbjct: 109 QPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARE 168
Query: 159 WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
+ K GC + +++ IL+ GYC+ + L +M + GI + YNTL
Sbjct: 169 LFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTL----- 223
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
I K G +A K+ + V +ET N I LC G++ A
Sbjct: 224 ------------ISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKILEA 271
Query: 275 WDIFHMLMQNPGL---TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IF + + L P+V+TY +M+ GFCKEG ++A L+ M+
Sbjct: 272 SRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNA 321
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 161/360 (44%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ +T+++LI C GR A +L ++ P + L + A
Sbjct: 226 CF-PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGA 284
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM +++ C+PDV T T +I GL K G M +G RPD V +N M
Sbjct: 285 LSLFEEMRHQY---CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNM 341
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++++A L + M P+ TYNT++ +W+ + G
Sbjct: 342 INFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 401
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------- 216
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461
Query: 217 -----------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ VY I L K G + +A+ +F + C + N L+ GL
Sbjct: 462 ELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G L A MQ G PD+ +YNI+++G K G +A +L +M+++ + P+
Sbjct: 522 ARTGMLDEALSTMRR-MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 580
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 56/320 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ V N++I L GR+ +A +LF+++ C P+V+T+NT+ LFE
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA---LFE------- 382
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
K + + M + G+ P T +++ D K +ME+A LLE M +
Sbjct: 383 --SKSRASEVPSWFER------MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 434
Query: 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDV-----------------YSYNILINGYCKDRN 183
+ P Y +L+D K R+D+ Y ++I K
Sbjct: 435 KGFPPCPAAYCSLIDALG---KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR 491
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
++DA+++ EM G D YN L + GL + G + EA+
Sbjct: 492 LDDAINMFDEMNKLGCAPDVYAYNAL-----------------MSGLARTGMLDEALSTM 534
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ H C+ I + N +++GL K G A ++ + Q+ + PDVV+YN ++
Sbjct: 535 RRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQST-VRPDVVSYNTVLGALSH 593
Query: 304 EGQHQKANGLLLDMEETGLE 323
G ++A L+ +M G E
Sbjct: 594 AGMFEEAAKLMEEMNTLGFE 613
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 131/322 (40%), Gaps = 67/322 (20%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +++ L + +A +F ++ C P +N++ ++ ++ L+ EM
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMS 221
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
E C PD +T + +I CK G + + A LL
Sbjct: 222 TEGH--CFPDTMTYSALISAFCKLG-------------------------RRDSATQLLN 254
Query: 137 VMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDR 182
M + + P T Y L+ F + CR DV++Y LI G K
Sbjct: 255 EMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 314
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+++A EM EG R PD+ V I+ L K G + +AMK+
Sbjct: 315 RIDEAYHFFYEMQREGCR-----------------PDTVVMNNMINFLGKAGRLDDAMKL 357
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
F +G +C+ ++ T N +I L + + M+ G++P TY+I+I GFC
Sbjct: 358 FQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFC 417
Query: 303 KEGQHQKANGLLLDMEETGLEP 324
K + +KA LL +M+E G P
Sbjct: 418 KTNRMEKAMMLLEEMDEKGFPP 439
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 93/241 (38%), Gaps = 46/241 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF++L C + +
Sbjct: 421 RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYA 480
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A+N+F+EM N+ G C PDV ++ GL + G M
Sbjct: 481 VMIKHLGKAGRLDDAINMFDEM-NKLG--CAPDVYAYNALMSGLARTGMLDEALSTMRRM 537
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G PD+ + N++ + L+K G A +L M Q V P
Sbjct: 538 QEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRP------------------ 579
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
DV SYN ++ E+A L EM + G D TY+++ AI V H Y
Sbjct: 580 ---DVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKV---DHEY 633
Query: 224 T 224
T
Sbjct: 634 T 634
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEM--- 75
P++V++N+++KGLC R L +++ C PN++TFNTL L LFE +
Sbjct: 225 PDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEV 284
Query: 76 ---VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+ E G C PD+ IIDG+CK+G M G++P+VV N + L
Sbjct: 285 LAQMAEHG--CTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGL 342
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+ EE LL M +D + T+N L+D F GC DV
Sbjct: 343 CSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDV 402
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y +ING+CK+ +++AV L + M + G + P++ YT +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCK-----------------PNTISYTIVLK 445
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL ++A + S + C L T N LI+ LCK G ++ A ++ ++ N G +
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVN-GCS 504
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+++Y+ +I G K G+ +A LL M G+ PN
Sbjct: 505 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 149/336 (44%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
TP++ + ++I G+C EG + A + ++ + PNV+ +NTL L + +EE
Sbjct: 294 TPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEE 353
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ F C D VT ++D C++G M+ G PDV+T + +
Sbjct: 354 LLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFC 413
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVY 169
K+G ++EA LL+ M PNT +Y ++ G W +GC +
Sbjct: 414 KEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPI 473
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N LIN CK VE A+ L ++ML +N PD Y+T IDG
Sbjct: 474 TFNTLINFLCKKGLVEQAIELLKQML-----------------VNGCSPDLISYSTVIDG 516
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G EA+++ + + N + + L + GR+ +F + Q+ +
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNI-QDTTIRS 575
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V YN +I CK G+ ++A L M +G PN
Sbjct: 576 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPN 611
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 49/268 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L+ P+++T+ ++I G C EG I EA L K + C PN I++ T+ L L
Sbjct: 389 LLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISY-TIVLKGL 447
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ ++ C + +T +I+ LCK G M+ G PD+
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 507
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK +EA LL VM+ + ++PNT Y+++ + +
Sbjct: 508 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDN 567
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK E A+ M+S G P
Sbjct: 568 IQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCV-----------------P 610
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+ YT I GL GFV EA ++ + +
Sbjct: 611 NESTYTILIRGLASEGFVKEAQEMLTEL 638
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 140/338 (41%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LNL 71
PN T+ +++ LC GRI +A + ++ C P ++ + A + +
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRV 179
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
E++ C DV C +++ +C G + G PDVV+ N +
Sbjct: 180 LEDL---HARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKG 236
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + L+E M++ PN T+NTL+ GC D
Sbjct: 237 LCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPD 296
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ Y +I+G CK+ +++ A + M S G++ + YNTL +
Sbjct: 297 IRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTL-----------------L 339
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL E ++ + + + C L T N L+D C+ G + ++ ++ + G
Sbjct: 340 KGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVH-GC 398
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV+TY +I+GFCKEG +A LL M G +PN
Sbjct: 399 MPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 134/334 (40%), Gaps = 74/334 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V +SLI+ LC GR EAAR V+ +N +
Sbjct: 59 VRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAM------------------- 96
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVVTLNVMTDNLSKDGKMEEANCLL 135
+ G C+ G ++ R P+ T + L G++ +A +L
Sbjct: 97 ----------VAGYCRAG-QLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVL 145
Query: 136 EVMIQRDVNPNTCTYNTLMD------GFA--------WWSKGCRHDVYSYNILINGYCKD 181
+ M +R P Y+ +++ GF ++GC DV + N+++N C
Sbjct: 146 DEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQ 205
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
+V+ A+ L R++ S G D +YN + M PP+ +
Sbjct: 206 GSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I L +NG +V + + H C I +IDG+CK G LK+A +I + M
Sbjct: 266 NTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNR-MP 324
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ GL P+VV YN ++ G C + ++ LL +M
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEM 358
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 167/375 (44%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-------KLNVFCC 54
G+ G LL + PN VT+N LI GL +G +A L K++ +
Sbjct: 248 GKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTY 307
Query: 55 DPNVITFNTLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+P + + ++ AL+L EEMV + P V T + I GLCK G M D
Sbjct: 308 NPLIYGYFNKGMLAEALSLQEEMVLKGA---SPTVATYNSFIYGLCKLGRMSDAMQQLSD 364
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ PDVV+ N + + G + +A L + + + P TYNTL+DG
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D+ +Y IL+NG CK ++ A EML EG+ D+ Y T
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
M PPD +Y +DGL K G + EA ++ + +
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I + GRL+ +IF+ ++ + GLTP VVTY ++IHG +G+ ++A
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEML-SKGLTPSVVTYTVLIHGHAGKGRLERA 603
Query: 311 NGLLLDMEETGLEPN 325
+M+E G+ PN
Sbjct: 604 FIYFSEMQEKGILPN 618
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 160/364 (43%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+G +L + + T+N LI G +G + EA L +++ + P V T+N+ L
Sbjct: 291 LIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLC 350
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVV 113
L + + + + PDVV+ +I G C+ G F++ +R P +V
Sbjct: 351 KLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIV 410
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T N + D L + G++E A L MI + P+ TY L++G
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
+G D Y+Y I G K + A SL EML++G D YN +
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + V PD YT+ I +NG + + ++F + + ++ T L
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G GRL+ A+ I+ MQ G+ P+V+TYN +I+G CK + +A +M E G
Sbjct: 591 IHGHAGKGRLERAF-IYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKG 649
Query: 322 LEPN 325
+ PN
Sbjct: 650 IFPN 653
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 139/298 (46%), Gaps = 48/298 (16%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNV 117
L++F++M+ PDV C I+ + +D +M + G++P +VT N
Sbjct: 184 LSVFDKMIKSR---LSPDVKNCNRILR-ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKG 163
+ D+ K GK+++ LL M +R PN TYN L++G + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ Y+YN LI GY + +A+SL EM+ +G TYN+
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M NN+ PD Y T I G + G +++A +F + + TI T N L+DGL
Sbjct: 360 QQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGL 419
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
C+ G L++A + + M N G+ PD+VTY I+++G CK G A +M GLE
Sbjct: 420 CRQGELEVAQQL-KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 53/234 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L F P+++ +N ++ GLC G + EA+ L +K
Sbjct: 492 LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK------------ 539
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
MV++ GVI PD VT T+II ++G M+ +G+ P
Sbjct: 540 --------------MVSD-GVI--PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTP 582
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------F 157
VVT V+ + G++E A M ++ + PN TYN+L++G F
Sbjct: 583 SVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFF 642
Query: 158 AWW-SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
A KG + YSY ILIN C N ++A+SL ++ML G++ D+ T++ L
Sbjct: 643 AEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALL 696
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + +L TP++VT+ LI G +GR+ A F ++ PNVIT+
Sbjct: 563 GRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N+L A N F EMV E G+ P+ + T +I+ C G
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMV-EKGIF--PNKYSYTILINENCNMGNWQEALSLYKQ 679
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
M+D+G++PD T + + L KD K++ L
Sbjct: 680 MLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K V + + VF + + ++ CN ++ L + A +++ M G+ P +
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT-MGEFGIKPTI 234
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN ++ +CK G+ Q+ LL +M+ G PN
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 268
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 160/354 (45%), Gaps = 55/354 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN--TLALV-------ALNLF 72
++ +NSLIKG C GR EA + + F + T+N T L+ A L
Sbjct: 333 DVSVYNSLIKGFCEVGRTGEAWKFWDSTG-FSGIRQITTYNIMTKGLLDSGMVSEATELL 391
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
+++ N+ C PD VT +I GLC++G+ + G DV + + M +
Sbjct: 392 KQLENDAS--CSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRF 449
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
KDG+ +AN + + M++ PN+ YN L++GF SK GC +
Sbjct: 450 CKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTI 509
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------------- 213
+YN LI+G CK ++A SL +EML G + D TY +L +
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDE 569
Query: 214 ---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ D V+ I GL G V EA ++ + C + T N L+DG +IG
Sbjct: 570 ILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGS 629
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A ++ ++ N GL PD+VTYN I G C + + LL ++ TG+ P
Sbjct: 630 IDKAASLWTAILDN-GLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 682
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 149/345 (43%), Gaps = 63/345 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------AL 69
PN+ T+N +++ LC G + A LF L P+ +T++TL L AL
Sbjct: 154 IAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNAL 213
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVM 118
+L +EM N +GV + D V ++ G + G + D G P++ T VM
Sbjct: 214 DLLDEMPN-YGV--QADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVM 270
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
D L K G+ +EA + M+ + +T T Y ILI+G
Sbjct: 271 LDGLCKLGRFKEAGEVWSRMMANNHQADTVT---------------------YGILIHGL 309
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY--------------T 224
C+ +V+ A + +M+ G+ D + YN+L V + T
Sbjct: 310 CRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQIT 369
Query: 225 TY---IDGLYKNGFVLEAMKVFSAIGNH-KCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
TY GL +G V EA ++ + N C T LI GLC+ G A++I
Sbjct: 370 TYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILED 429
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+N G DV +Y+ MI+ FCK+G+ AN + +M + G +PN
Sbjct: 430 -ARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPN 473
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 36/231 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN +N+LI G C +I +A +++ ++ C P +IT+NTL A +L
Sbjct: 472 PNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSL 531
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM+ E G KPD+ T ++I GLC+D ++D G++ DV+ N++
Sbjct: 532 TKEML-ERGF--KPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHG 588
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHD 167
L GK++EA C+ M +++ +PN TYNTLMDGF + W+ G + D
Sbjct: 589 LCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPD 648
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ +YN I G C + V L E+L+ GI T++ L A+ P
Sbjct: 649 IVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGP 699
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 56/271 (20%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMD-------QGMRPDV 112
AL F ++ + G C P V + ++D + D F + + P++
Sbjct: 101 AALAAFRDLPSLLG--CNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNL 158
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172
T N++ +L G ++ A L + +R V P+ TY+TLM G A +HD
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLA------KHD----- 207
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+++A+ L EM + G++ADA YN L + G ++
Sbjct: 208 ----------QLDNALDLLDEMPNYGVQADAVCYNAL-----------------LSGCFR 240
Query: 233 NGFVLEAMKVFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +AMKV+ + + + T ++DGLCK+GR K A +++ +M N D
Sbjct: 241 TGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMAN-NHQADT 299
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
VTY I+IHG C+ G A + DM + GL
Sbjct: 300 VTYGILIHGLCRSGDVDSAARVYSDMVKAGL 330
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 161/353 (45%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------LVALNLFEE 74
P++ T+N LI GLC +G+I EA RL ++ P+V+T+NTL +L FE
Sbjct: 315 PDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFEL 374
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ G KP+ VT ++ K+G M + G PD VT N + + K
Sbjct: 375 IDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCK 434
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYS 170
G++ EA +++ M ++ + N+ T NT++ D + S + D S
Sbjct: 435 AGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVS 494
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y LI GY KD +A+ L EM + I TYNT+ +
Sbjct: 495 YGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELL 554
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ + PD Y T I G + G V +A + + + + TCN L+ GLC G L
Sbjct: 555 ESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLD 614
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F+ + + G D VTYN +I G CKE + ++A LL +MEE L P+
Sbjct: 615 KALKLFNTWI-SKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 53/373 (14%)
Query: 3 RASGGFVLLGRIL-MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ S L+G++ SCF P+ V++N+++ LC +G++ EA L + PN TF
Sbjct: 227 KLSEAIGLIGKMKDFSCF-PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTF 285
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMR------ 109
N L L +E ++ + PDV T +I GLCKDG +D+ R
Sbjct: 286 NILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDG-KIDEAFRLKDEME 344
Query: 110 -----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
PDVVT N + + + L++ M + V PN TYN ++ + K
Sbjct: 345 NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMD 404
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G D ++N LINGYCK + +A + EM +G++ ++ T NT+
Sbjct: 405 NAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTIL 464
Query: 211 MAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ D Y T I G +K+G +EAMK++ + + +
Sbjct: 465 HTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEII 524
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+I T N +I GLC G+ + D + L+++ GL PD TYN +I G+C+EGQ +KA
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLES-GLVPDETTYNTIILGYCREGQVEKAFQ 583
Query: 313 LLLDMEETGLEPN 325
M + +P+
Sbjct: 584 FHNKMVKKSFKPD 596
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 142/326 (43%), Gaps = 53/326 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L ++ S F+P+ VTFN+LI G C GR+ EA R+ +++ N +T NT+
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTI------ 463
Query: 71 LFEEMVNEFGVIC-KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+C + + ++ K G+ +D+ V+ + KDGK
Sbjct: 464 --------LHTLCGERKLDDAYKLLSSASKRGYFVDE------VSYGTLIMGYFKDGKSV 509
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILI 175
EA L + M ++++ P+ TYNT++ G K G D +YN +I
Sbjct: 510 EAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTII 569
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
GYC++ VE A +M+ + + D T N L + GL G
Sbjct: 570 LGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNIL-----------------LRGLCTEGM 612
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ +A+K+F+ + + T N +I GLCK R + A+D+ M+ L PD TYN
Sbjct: 613 LDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAE-MEEKKLGPDCYTYN 671
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETG 321
++ G+ ++A + + E G
Sbjct: 672 AILSALADAGRMKEAEEFMSRIVEQG 697
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 57/324 (17%)
Query: 38 RILEAARLFKKLNVFCCDPNVITFNTL--ALV----------ALNLFEEMVNEFGVICKP 85
R AA++F ++ PN++T NTL ALV + +F +++ + GV K
Sbjct: 154 RPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVI-KLGV--KV 210
Query: 86 DVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+ T +I G C + G M D PD V+ N + D L K GK+ EA LL
Sbjct: 211 NTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLL 270
Query: 136 EVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-----------HDVYSYNILINGYCKD 181
M + PN T+N L+ G+ W + + DV++YN+LI G CKD
Sbjct: 271 LDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKD 330
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+++A L EM + + D TYNTL I+G + L+ +
Sbjct: 331 GKIDEAFRLKDEMENLKLLPDVVTYNTL-----------------INGCFDCSSSLKGFE 373
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + T N ++ K G++ A + M+ G +PD VT+N +I+G+
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRK-MEESGFSPDCVTFNTLINGY 432
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK G+ +A ++ +M GL+ N
Sbjct: 433 CKAGRLSEAFRMMDEMSRKGLKMN 456
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 59/245 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+++T+N++I GLC G+ ++ +L P+ T+NT+ L A
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQF 584
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
+MV + KPD+ TC ++ GLC +G + + +G D VT N +
Sbjct: 585 HNKMVKKS---FKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISG 641
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K+ + EEA LL M ++ + P+ TYN ++ A + + + I+ G +D
Sbjct: 642 LCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701
Query: 182 RNV-------------------------------------EDAVSLCREMLSEGIRADAT 204
+ + +DA+ + +E +GI +
Sbjct: 702 QTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKS 761
Query: 205 TYNTL 209
TY +L
Sbjct: 762 TYISL 766
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 39/195 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F +++ F P++ T N L++GLCTEG + +A +LF + +T+
Sbjct: 576 GQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTY 635
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFM----------MD 105
NT+ L + FEE + + + PD T I+ L G M ++
Sbjct: 636 NTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVE 695
Query: 106 QG-----------------------MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
QG P+ VT + + L GK ++A +++ Q+
Sbjct: 696 QGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKG 755
Query: 143 VNPNTCTYNTLMDGF 157
+ + TY +LM+G
Sbjct: 756 ITLHKSTYISLMEGL 770
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 167/375 (44%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-------KLNVFCC 54
G+ G LL + PN VT+N LI GL +G +A L K++ +
Sbjct: 248 GKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTY 307
Query: 55 DPNVITFNTLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+P + + ++ AL+L EEMV + P V T + I GLCK G M D
Sbjct: 308 NPLIYGYFNKGMLAEALSLQEEMVLKG---ASPTVATYNSFIYGLCKLGRMSDAMQQLSD 364
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ PDVV+ N + + G + +A L + + + P TYNTL+DG
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D+ +Y IL+NG CK ++ A EML EG+ D+ Y T
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 484
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
M PPD +Y +DGL K G + EA ++ + +
Sbjct: 485 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG 544
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I + GRL+ +IF+ ++ + GLTP VVTY ++IHG +G+ ++A
Sbjct: 545 VIPDYVTYTSIIHAHLENGRLRKGREIFYEML-SKGLTPSVVTYTVLIHGHAGKGRLERA 603
Query: 311 NGLLLDMEETGLEPN 325
+M+E G+ PN
Sbjct: 604 FIYFSEMQEKGILPN 618
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 160/362 (44%), Gaps = 62/362 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR S L +L + P++V++N+LI G C G +++A LF +L P ++T
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVT 411
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NTL VA L EM+NE G+ PD+VT T +++G CK G
Sbjct: 412 YNTLLDGLCRQGELEVAQQLKVEMINE-GI--APDIVTYTILVNGSCKMGSLSMAQEFFD 468
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ D K G A L E M+ + P+ YN ++DG
Sbjct: 469 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGL---- 524
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
CK N+E+A L ++M+S+G+ D TY ++
Sbjct: 525 -----------------CKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRK 567
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P YT I G G + A FS + + + T N LI+
Sbjct: 568 GREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLIN 627
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK+ R+ A++ F +++ G+ P+ +Y I+I+ C G Q+A L M + G++
Sbjct: 628 GLCKVRRMDQAYNFFAEMVEK-GIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQ 686
Query: 324 PN 325
P+
Sbjct: 687 PD 688
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 139/298 (46%), Gaps = 48/298 (16%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNV 117
L++F++M+ PDV C I+ + +D +M + G++P +VT N
Sbjct: 184 LSVFDKMIKSR---LSPDVKNCNRILR-ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKG 163
+ D+ K GK+++ LL M +R PN TYN L++G + G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ Y+YN LI GY + +A+SL EM+ +G TYN+
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 359
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M NN+ PD Y T I G + G +++A +F + + TI T N L+DGL
Sbjct: 360 QQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGL 419
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
C+ G L++A + + M N G+ PD+VTY I+++G CK G A +M GLE
Sbjct: 420 CRQGELEVAQQL-KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 476
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 53/237 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L F P+++ +N ++ GLC G + EA+ L +K
Sbjct: 492 LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK------------ 539
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
MV++ GVI PD VT T+II ++G M+ +G+ P
Sbjct: 540 --------------MVSD-GVI--PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTP 582
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------F 157
VVT V+ + G++E A M ++ + PN TYN+L++G F
Sbjct: 583 SVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFF 642
Query: 158 AWW-SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
A KG + YSY ILIN C N ++A+SL ++ML G++ D+ T++ L +
Sbjct: 643 AEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQL 699
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G + +L TP++VT+ LI G +GR+ A F ++ PNVIT+
Sbjct: 563 GRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N+L A N F EMV E G+ P+ + T +I+ C G
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMV-EKGIF--PNKYSYTILINENCNMGNWQEALSLYKQ 679
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKME 129
M+D+G++PD T + + L KD K++
Sbjct: 680 MLDRGVQPDSCTHSALLKQLGKDCKLQ 706
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K V + + VF + + ++ CN ++ L + A +++ M G+ P +
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT-MGEFGIKPTI 234
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN ++ +CK G+ Q+ LL +M+ G PN
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 268
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 155/337 (45%), Gaps = 66/337 (19%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LLG + FTP++VT++++I GLC GR+ +A +F++++ C P IT+N+L
Sbjct: 241 LLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGY 297
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM-----R 109
A+ L +MV++ C PDV+T T ++ CK D + + Q M
Sbjct: 298 CRAGDMDEAIRLLGKMVDDN---CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLS 354
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVVT + D L +G+ME+A LLE + +R GC +Y
Sbjct: 355 PDVVTFTSLVDGLCGEGRMEDALELLEEITRR---------------------GCPPTIY 393
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN +++GYCK V A L + S G + TYN L + G
Sbjct: 394 TYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNIL-----------------VAG 436
Query: 230 LYKNGFVLEAMKVFSAIGNH--KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+ G +A++ + + C ++ ++D LC+ GR A + ++Q G
Sbjct: 437 CCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQR-GY 495
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
P T+ ++ CK Q Q+A+ LL +M + G P
Sbjct: 496 VPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTP 532
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 54/339 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P + N +I GLC GR+ A +++++N P+ +T+ L A+ +
Sbjct: 113 PGTLLHNVVIGGLCRAGRLRHALGVYRQMN-DAHPPDFLTYTKLVHGLSKAGRLRDAVQV 171
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDN 121
+EMV+ V PD T T ++ LC D M+ +GM + +T + + D
Sbjct: 172 LQEMVSARHV---PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 228
Query: 122 LSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------GCRHDVY 169
L K +++EA LL + +R P+ TY+T++DG + C
Sbjct: 229 LCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI 288
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YN LI GYC+ ++++A+ L +M+ + D TY TL M
Sbjct: 289 TYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQM 348
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N + PD +T+ +DGL G + +A+++ I C TI T NC++DG CK ++
Sbjct: 349 VANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQV 408
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ A ++ ++ G P+ VTYNI++ G C+ G+ +A
Sbjct: 409 RKAEELVADF-RSRGFVPNTVTYNILVAGCCRAGRTDQA 446
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/401 (23%), Positives = 162/401 (40%), Gaps = 99/401 (24%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILE-AARLFKKLNVFCCDPNVITFNTL-------- 64
+L + + + TF +++GL ++ L ++ P+ + NT+
Sbjct: 1 MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60
Query: 65 -ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GFMMD---QGMRPDVV 113
A+ LF++M E G + + T N+I LCK G ++D +GM P +
Sbjct: 61 DTTTAMALFDKMA-ELGAV---NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTL 116
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVN----PNTCTYNTLMDGFAWWSK------- 162
NV+ L + G++ A + + R +N P+ TY L+ G + +
Sbjct: 117 LHNVVIGGLCRAGRLRHA-----LGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQV 171
Query: 163 -----GCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
RH D + +++ C V+DA L EML G+ A+A TY+ L +
Sbjct: 172 LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 231
Query: 214 -----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVF------------- 243
PD Y+T IDGL K G + +A+ +F
Sbjct: 232 CERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYN 291
Query: 244 SAIGNH-------------------KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
S IG + C + T L+ CK+GRL A+++F ++ N
Sbjct: 292 SLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+PDVVT+ ++ G C EG+ + A LL ++ G P
Sbjct: 352 K-LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPT 391
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + L +++ + +P++VTF SL+ GLC EGR+ +A L +++ C P + T
Sbjct: 335 MGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYT 394
Query: 61 FNTLA-----LVALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
+N + + EE+V +F G + P+ VT ++ G C+ G DQ ++
Sbjct: 395 YNCVVDGYCKSNQVRKAEELVADFRSRGFV--PNTVTYNILVAGCCRAG-RTDQALQYLD 451
Query: 110 ----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
V ++ D L +DG+ ++A E MIQR P T+ T++
Sbjct: 452 QLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 506
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 164/361 (45%), Gaps = 61/361 (16%)
Query: 2 GRASGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
R + VL+ + SC P+ TF +L++G EG I A RL +++ C P +T
Sbjct: 209 ARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVT 268
Query: 61 FNTL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------- 101
N L AL + +E+ + F +PD VT + ++GLC++G
Sbjct: 269 VNVLINGYCKLGRVGDALGYIQ--QEIADGF----EPDRVTFSTFVNGLCQNGHVDHALK 322
Query: 102 ---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF- 157
M+ +G PDV T + + + L +G++EEA ++ M+ P+T T+NTL+
Sbjct: 323 VLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALC 382
Query: 158 -------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
KG +VY++NILIN CK + AV L EM S G D
Sbjct: 383 TENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
TYN L ID L +G + +A+ + + C + T N +IDG
Sbjct: 443 TYNIL-----------------IDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK R++ A ++F M G+ + +T+N +I G C + A L+ M GL+P
Sbjct: 486 LCKRRRIEEAEEVFDQ-MDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQP 544
Query: 325 N 325
N
Sbjct: 545 N 545
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 151/350 (43%), Gaps = 73/350 (20%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75
M C +P VT N LI G C GR+ +A + +E+
Sbjct: 260 MGC-SPTSVTVNVLINGYCKLGRVGDALGYIQ-------------------------QEI 293
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKD 125
+ F +PD VT + ++GLC++ G M+ +G PDV T + + + L +
Sbjct: 294 ADGF----EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNN 349
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G++EEA ++ M+ P+T T+NTL+ KG +VY++
Sbjct: 350 GELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTF 409
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
NILIN CK + AV L EM S G D TYN L M +
Sbjct: 410 NILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEV 469
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P + Y T IDGL K + EA +VF + T N LIDGLC R+
Sbjct: 470 SGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDD 529
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A ++ ++ GL P+ VTYN ++ +CK+G KA +L M G E
Sbjct: 530 AAELVDQMISE-GLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFE 578
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 146/338 (43%), Gaps = 55/338 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL-------VALNL 71
P+ TFN+LI LCTE ++ EA L ++L V PNV TFN L AL +A+ L
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
FEEM + C PD VT +ID LC G + G VT N + D
Sbjct: 429 FEEMKSSG---CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K ++EEA + + M + N T+NTL+DG S+G + +
Sbjct: 486 LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+YN ++ YCK N+ A + + M + G D TY TL I
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATL-----------------I 588
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K A+K+ + T + N +I L + + A +F M G
Sbjct: 589 NGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFRE-MTEVGG 647
Query: 288 TPDVVTYNIMIHGFCKEGQH-QKANGLLLDMEETGLEP 324
PD TY I+ G C+ G ++A L++M + G P
Sbjct: 648 PPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIP 685
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 152/357 (42%), Gaps = 54/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + + F P+ VTF++ + GLC G + A ++ + C+P+V T
Sbjct: 279 LGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYT 338
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
++T+ A + +MV+ C PD T +I LC + + +
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSG---CLPDTTTFNTLIVALCTENQLEEALDLAR 395
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G+ P+V T N++ + L K G A L E M P+ TYN L+D
Sbjct: 396 ELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSG 455
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K GC +YN +I+G CK R +E+A + +M GI +A T+N
Sbjct: 456 KLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFN 515
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL IDGL + +A ++ + + T N ++ CK
Sbjct: 516 TL-----------------IDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCK 558
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G + A DI + N G DVVTY +I+G CK + Q A LL M G++P
Sbjct: 559 QGNISKAADILQTMTAN-GFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKP 614
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 50/356 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEG-----RIL--EAARLFKKLNVFCCDPNVITFNTLALV--AL 69
TP+ + +I+ L T G ++L E R ++ + + ++ L L A
Sbjct: 86 LTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAF 145
Query: 70 NLFEEMVNEFGVICKPDVVT--CTNIIDG----LCKDGF--MMDQGMRPDVVTLNVMTDN 121
+L ++ FGV +V T + +G L + + M QG+ PDVVT N + D
Sbjct: 146 DLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDA 205
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSK-GCRHD 167
L + + A +LE M DV P+ T+ TLM+GF A S+ GC
Sbjct: 206 LCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPT 265
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
+ N+LINGYCK V DA+ ++ +++G D T++T
Sbjct: 266 SVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLG 325
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M PD + Y+T I+ L NG + EA + + + + C+ T N LI LC
Sbjct: 326 LMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTEN 385
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L+ A D+ L GL+P+V T+NI+I+ CK G A L +M+ +G P+
Sbjct: 386 QLEEALDLARELTVK-GLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPD 440
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 157/355 (44%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N +N L+ L +I + +++ +P+V+TFNT+ A A+ +
Sbjct: 160 NTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLML 219
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM + PD T T +++G ++G M + G P VT+NV+ +
Sbjct: 220 EEMSS---CDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGY 276
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDV 168
K G++ +A ++ I P+ T++T ++G +GC DV
Sbjct: 277 CKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDV 336
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
Y+Y+ +IN C + +E+A + +M+ G D TT+NTL +A
Sbjct: 337 YTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARE 396
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ + P+ + + I+ L K G A+++F + + C T N LID LC G+
Sbjct: 397 LTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A D+ M+ G VTYN +I G CK + ++A + M+ TG+ N
Sbjct: 457 LAKALDLLKE-MEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRN 510
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 116/297 (39%), Gaps = 79/297 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + LL + +S + VT+N++I GLC RI EA +F +++V N ITF
Sbjct: 455 GKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITF 514
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPD 111
NTL IDGLC M+ +G++P+
Sbjct: 515 NTL-----------------------------IDGLCNAERIDDAAELVDQMISEGLQPN 545
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VT N + + K G + +A +L+ M + G DV +Y
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTMT---------------------ANGFEVDVVTY 584
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN----------------TLFMAINN 215
LING CK R + A+ L R M +G++ YN +LF +
Sbjct: 585 ATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTE 644
Query: 216 V--PPDSHVYTTYIDGLYKNGF-VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
V PPD+ Y GL + G + EA + ++ + + L +GL +G
Sbjct: 645 VGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 153/335 (45%), Gaps = 55/335 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
PN T+ L++ LC R EA +F+ + C PNV +++ L A
Sbjct: 49 VPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAE 108
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L EM++ +P+VVT +++ GLCK G M+ +G PD V NV+ D
Sbjct: 109 LLNEMIDGGH---QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLID 165
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
SK G M EA L E M+++ P TYN+L+ GF+ +GC
Sbjct: 166 GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+++++N L++G+CK ++ +A L EM S G D +YNTL
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLL 285
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + V PD Y IDG K+G + A+K+F I + + +ID LC+
Sbjct: 286 REMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRA 345
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
G++ A+ +F ++ N G PD ++ G C+
Sbjct: 346 GKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCR 379
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 159/365 (43%), Gaps = 50/365 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
V G C +PN+ +++ LI GLC ++ EAA L ++ PNV+T+ +L L
Sbjct: 74 VFRGMAAQGC-SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
+ +E V+ F + C PD V +IDG K G M+++G P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
T N + S+ G+ L + M+++ PN T+N L+DGF
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN----------- 207
S GC DV SYN LI G C +A L REM+ G+ D +YN
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312
Query: 208 -----TLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
LF I + + PD+ Y+T ID L + G V A VF + +
Sbjct: 313 LDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIP 372
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ GLC+ RL + ++F +++ P + YN++++ CK + + ++ E
Sbjct: 373 LVIGLCRGERLTESCELFQAMVKFE-CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431
Query: 321 GLEPN 325
G P+
Sbjct: 432 GFSPD 436
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 62/336 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ L R++ P+ V +N LI G +G + EA RLF+++ C P V T
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFT 194
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+N+L +LF++M+ + C P++ T N++DG CK G M++
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQG---CVPNIFTFNNLLDGFCKMGDMVEAHRLFL 251
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
G PDVV+ N + + GK EA LL MI+ V P+ +Y
Sbjct: 252 EMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSY----------- 300
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
NILI+GY K ++ A+ L E+ G+ DA +Y+T+
Sbjct: 301 ----------NILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGA 350
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M N PD+ V + GL + + E+ ++F A+ +CV I N L+
Sbjct: 351 AFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMY 410
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
LCK R +IFH L + G +PDV +++
Sbjct: 411 KLCKAKRSDDVCEIFHELTER-GFSPDVEISKVILE 445
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 137/318 (43%), Gaps = 55/318 (17%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGV 81
+++N L++ L GR + + C PN T+ L +L FEE
Sbjct: 18 LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEE------- 70
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++ G M QG P+V + +++ L + K++EA LL MI
Sbjct: 71 --------ARSVFRG------MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDG 116
Query: 142 DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDA 187
PN TY +L+ G K GC D YN+LI+G+ K ++ +A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L EML +G TYN+L + G + G +F +
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSL-----------------LSGFSRKGEFGRVQSLFKDML 219
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
CV I T N L+DG CK+G + A +F + M++ G PDVV+YN +I G C +G+
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF-LEMRSLGCPPDVVSYNTLIRGMCSKGKP 278
Query: 308 QKANGLLLDMEETGLEPN 325
+A LL +M +G+ P+
Sbjct: 279 HEAQRLLREMIRSGVGPD 296
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 154 MDGFAWWSKGCR--HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
M F W H SYN L+ K + +ML+ G + TY L
Sbjct: 1 MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLR 60
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI--GNHKC 251
MA P+ Y+ I GL + V EA ++ + + G H+
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ- 119
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T L+ GLCK+G+LK A D+F ++ G PD V YN++I GF K+G +A
Sbjct: 120 -PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-GCPPDGVVYNVLIDGFSKKGDMGEAY 177
Query: 312 GLLLDMEETGLEPN 325
L +M E G P
Sbjct: 178 RLFEEMLEKGCIPT 191
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 157/338 (46%), Gaps = 55/338 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN T+ + I G I A R FK + PN + + L + AL+
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALST 613
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FM--MDQGMRPDVVTLNVMTDN 121
F+ M+ E G+I PD+ + II L K+G F+ + G+ PDV N +
Sbjct: 614 FKCML-EKGLI--PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K+G +E+A+ L + M+ +NPN YNTL++G K D
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPD 730
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y+ +I+GYCK N+ +A L EM+S+GI PD ++Y I
Sbjct: 731 VVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI-----------------SPDGYIYCILI 773
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K G + +A+ +F K V ++ N LID CK G++ A ++F M + L
Sbjct: 774 DGCGKEGNLEKALSLFHE-AQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDD-MVDKKL 831
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TP++VTY I+I + K ++A L LDME + PN
Sbjct: 832 TPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 163/374 (43%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R+ ++ + S PN T+ +LI G EG I EA R+ ++ NV+T+N
Sbjct: 326 RSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYN 385
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFM 103
+ A++LF EM+ +PD T +IDG K M
Sbjct: 386 AMIGGIAKAGEMAKAMSLFNEMLM---AGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
+ + P T +V+ L +++AN +L+ MI+ V PN Y TL+ + S+
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G D++ YN LI G C+ + VE+A L +M +GI+ +A TY
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAF 562
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + + P++ +YT I G G +EA+ F +
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ I + +I L K G+ K A +F ++ G+ PDV YN +I GFCKEG +KA+
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT-GVVPDVFLYNSLISGFCKEGDIEKAS 681
Query: 312 GLLLDMEETGLEPN 325
L +M G+ PN
Sbjct: 682 QLYDEMLHNGINPN 695
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 162/375 (43%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L +LM+ P+ T+N LI G + +A L ++ P+ T+
Sbjct: 395 GEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A + ++M+ GV KP+V +I ++
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRN-GV--KPNVFMYGTLIKAYVQESRYEMAIELLKI 511
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+ G+ PD+ N + L + K+EEA LL M ++ + PN TY ++ ++
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE 571
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G + Y ILI G+C N +A+S + ML +G+ D Y+
Sbjct: 572 IQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSA 631
Query: 209 LFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ +++ V PD +Y + I G K G + +A +++ + ++
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I N LI+GLCK+G + A ++F + + L PDVVTY+ +I G+CK G +A
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEI-EEKDLVPDVVTYSTIIDGYCKSGNLTEA 750
Query: 311 NGLLLDMEETGLEPN 325
L +M G+ P+
Sbjct: 751 FKLFDEMISKGISPD 765
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 137/282 (48%), Gaps = 42/282 (14%)
Query: 85 PDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
PDV T TN+I CK G + M++ +P++ T N L + G ++EA +
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299
Query: 136 EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKD 181
++M+++ + P+ TY L+DGF + S G + ++Y LI+G+ K+
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E+A+ + EM++ G++ + TYN + M + + PD+ Y
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTY 419
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG K+ + +A ++ + + K + T + LI GLC L+ A ++ +++
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G+ P+V Y +I + +E +++ A LL M G+ P+
Sbjct: 480 N-GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 152/350 (43%), Gaps = 52/350 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
+L S PN V + LIKG C G +EA FK + P++ ++ + + +L+
Sbjct: 582 MLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI-IHSLSKNG 640
Query: 74 EMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
+ GV K PDV ++I G CK+G M+ G+ P++V N
Sbjct: 641 KTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYN 700
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+ + L K G++ +A L + + ++D+ P+ TY+T++DG+ SK
Sbjct: 701 TLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISK 760
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G D Y Y ILI+G K+ N+E A+SL E + + + +N+L
Sbjct: 761 GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEA 819
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + P+ YT ID K + EA ++F + + T L+
Sbjct: 820 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 879
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+IG +F M+ G+ D + Y +M +CKEG+ +A LL
Sbjct: 880 YNQIGNRFKMISLFKD-MEARGIACDAIAYGVMASAYCKEGKSLEALKLL 928
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 142/344 (41%), Gaps = 82/344 (23%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L +L + PN+V +N+LI GLC G + +A LF ++ P+V+T++T+
Sbjct: 683 LYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYC 742
Query: 66 -----LVALNLFEEMVNE----------------------------FGVICKPDVVTCT- 91
A LF+EM+++ F + V + +
Sbjct: 743 KSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSA 802
Query: 92 --NIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
++ID CK G M+D+ + P++VT ++ D K MEEA L M
Sbjct: 803 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 862
Query: 140 QRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILINGYCKDRNVE 185
R++ PNT TY +L+ + ++G D +Y ++ + YCK+
Sbjct: 863 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSL 922
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A+ L + L EGI+ + ++ L I L K + +++ S
Sbjct: 923 EALKLLNKSLVEGIKLEDDVFDAL-----------------IFHLCKEKQISTVLELLSE 965
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+G + L+ +TCN L+ G K G A + +MQ G P
Sbjct: 966 MGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG-VMQRLGWVP 1008
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 154 MDGFAWWSKG---CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ F +WS ++SY+IL C + A ++ ++L + + ++L
Sbjct: 103 LQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEKLL-QTRKPPLEILDSLV 161
Query: 211 MAINNVPPDS-HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ V+ +ID GF+ EA VF A + T+ CN L+ L K
Sbjct: 162 RCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKAN 221
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ + W ++ +++ + PDV TY +I CK G K +L +ME+
Sbjct: 222 MMGLFWKVYGSMVE-AKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK 270
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 162/361 (44%), Gaps = 57/361 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-ALV-------- 67
CF P+ VT+++LI C GR A L ++ P + L AL+
Sbjct: 221 QCF-PDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHG 279
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
AL LFEEM +++ C+PDV T T +I GL K G M +G RPD V +N
Sbjct: 280 ALGLFEEMRHQY---CRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNN 336
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK---- 162
M + L K G++++A L E M P+ TYNT++ +W+ +
Sbjct: 337 MINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGS 396
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------ 216
G ++Y+ILI+G+CK E A+ L EM +G Y +L A+
Sbjct: 397 GISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 456
Query: 217 ------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ VY I L K G + +A+ +F + C + N L+ G
Sbjct: 457 NELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSG 516
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L + G L A MQ+ G PD+ +YNI+++ K G +A G+L +M+++ ++P
Sbjct: 517 LARAGMLDEALTTMRR-MQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKP 575
Query: 325 N 325
+
Sbjct: 576 D 576
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 59/318 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +I+ L I +A +F ++ C P +N++ ++ ++ L+ EM
Sbjct: 158 LSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMS 217
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
NE C PD VT + +I CK G M D GM+P ++ L K
Sbjct: 218 NEGQ--CFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLD 275
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ A L E M + CR DV++Y LI G K +++
Sbjct: 276 NVHGALGLFEEMRH---------------------QYCRPDVFTYTELIRGLGKAGRLDE 314
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A + EM EG R D N + I+ L K G + +A+K+F +
Sbjct: 315 AYNFFHEMRREGCRPDTVLMNNM-----------------INFLGKAGRLDDAIKLFEEM 357
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+C+ ++ T N +I L + + M+ G++P TY+I+I GFCK +
Sbjct: 358 ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNR 417
Query: 307 HQKANGLLLDMEETGLEP 324
+KA LL +M+E G P
Sbjct: 418 TEKAMMLLEEMDEKGFPP 435
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 68/263 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF- 79
P+ V N++I L GR+ +A +LF+++ C P+V+T+NT+ + AL + V+E
Sbjct: 329 PDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTI-IKALFESKSRVSEIS 387
Query: 80 -------GVICKPDVVTCTNIIDGLCK----DGFMM------DQGMRP------------ 110
G P T + +IDG CK + MM ++G P
Sbjct: 388 SWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 447
Query: 111 -----------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
VM +L K G++++A L + M + PN
Sbjct: 448 GKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNV 507
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
YN LM G A GC D+ SYNI++N K + A+ +
Sbjct: 508 YAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCN 567
Query: 194 MLSEGIRADATTYNTLFMAINNV 216
M I+ DA +YNT+ A+++
Sbjct: 568 MKQSAIKPDAVSYNTVLGALSHA 590
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 43/233 (18%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF++L C + +
Sbjct: 417 RTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYA 476
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A++LF+EM N G C P+V ++ GL + G M
Sbjct: 477 VMIKHLGKAGRLDDAVDLFDEM-NRLG--CTPNVYAYNALMSGLARAGMLDEALTTMRRM 533
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
D G PD+ + N++ + L+K G + A +L M Q + P+ +YNT++ +
Sbjct: 534 QDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGM- 592
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
E+A L +EM + G D TY+++ AI V
Sbjct: 593 --------------------FEEAAKLMKEMNAIGFDYDLITYSSILEAIGKV 625
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 163/340 (47%), Gaps = 54/340 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+ + ++ LIKG C +G + A +L +++ P+ F +L + AL
Sbjct: 426 YKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNAL 485
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
F M+ E G++ P + TC IID C++G M QG+ P++ T N +
Sbjct: 486 EFFNMML-EGGIL--PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVI 542
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ L K+ K E A L +M++R+V P+ Y+TL+DGFA S G
Sbjct: 543 NRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVT 602
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ +Y ILIN C + +A +L ++M G+ PD YT+
Sbjct: 603 PDMVAYTILINILCHRSRMCEAYNLFKKMTENGM-----------------TPDKISYTS 645
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I G + G + +A +F+ + + T+ T L+DG CK+ R+ IA D+ M+
Sbjct: 646 VIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIA-DMLIDEMKRK 704
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+TPDVVTYN++I + G KA +L +M+E G+ P+
Sbjct: 705 GITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPD 744
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 165/354 (46%), Gaps = 55/354 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+ +N++I GLC +G + EA ++ +++ P+V T++ L L L
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM ++ + +P +V+ +++ GLCK + G + D +++
Sbjct: 384 EEM--KYSNM-EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGF 440
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDV 168
G ++ A+ L+E M++ ++ P+ + +L+ GF W G +
Sbjct: 441 CMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSI 500
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------F 210
+ N++I+ +C++ VE+A++L EM ++GI + TYN +
Sbjct: 501 ATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPL 560
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M NV P VY+T IDG K +A+ +++ + + LI+ LC R
Sbjct: 561 MLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSR 620
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A+++F + +N G+TPD ++Y +I GFC+ G +KA L +M + G P
Sbjct: 621 MCEAYNLFKKMTEN-GMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLP 673
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 148/331 (44%), Gaps = 73/331 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P +VT+++ I GLC G + AL+ +++
Sbjct: 287 SPTVVTYSTYIYGLCRVGYVES--------------------------ALDFVRSLISAN 320
Query: 80 GVICKPDVVTCTN-IIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
G++ V C N II GLCK G + + G+ PDV T +++ K G +
Sbjct: 321 GLVN----VYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDV 376
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
E+ L+E M ++ P+ +Y++L G + G ++D +Y+IL
Sbjct: 377 EKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSIL 436
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I G+C +++ A L EM+ NN+ PD + + + G K G
Sbjct: 437 IKGFCMQGDLDSAHKLMEEMVR-----------------NNLAPDPSNFESLVHGFCKMG 479
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A++ F+ + + +I TCN +ID C+ GR++ A ++ + MQ G+ P++ TY
Sbjct: 480 LWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNE-MQTQGIFPNLFTY 538
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +I+ CKE + ++A L M + + P+
Sbjct: 539 NAVINRLCKERKSERALELFPLMLKRNVLPS 569
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSL--CREMLSEGIRADATTYNTLFMAINNVPP 218
S G +V++Y I++N YCK E + E+L E M N P
Sbjct: 242 STGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEE-------------MERNGESP 288
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
Y+TYI GL + G+V A+ ++ + ++ + N +I GLCK G L A +
Sbjct: 289 TVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVL 348
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G++PDV TY+I+IHGFCK+G +K L+ +M+ + +EP+
Sbjct: 349 EE-MKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPS 394
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 42/244 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK---KLNVFCCDPNV 58
GR L+ + PN+ T+N++I LC E + A LF K NV P+V
Sbjct: 514 GRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVL---PSV 570
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------ 103
+ ++TL + AL L+ M+ + GV PD+V T +I+ LC M
Sbjct: 571 VVYSTLIDGFAKQSNSQKALMLYARML-KIGVT--PDMVAYTILINILCHRSRMCEAYNL 627
Query: 104 ----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
+ GM PD ++ + + G M +A L M+QR P TY +L+DG+
Sbjct: 628 FKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCK 687
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG DV +YN+LI + + N++ A+ + EM G+ D T
Sbjct: 688 MNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMT 747
Query: 206 YNTL 209
Y L
Sbjct: 748 YMML 751
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
AS +L +++ S F P++VTFN++I G C EG + EA +L ++ +PN +++
Sbjct: 202 ASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTP 261
Query: 64 L---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
L A+VA +L EM+ G PD++T +I GL G M
Sbjct: 262 LIHGFCVRGEAMVASDLLVEMM---GRGHTPDMITLGALIHGLVVSGQVNDALIVREKMA 318
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
++ + PD NV+ L K + A LLE M+++ V P+ Y TL+DGF
Sbjct: 319 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLS 378
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
K C D+ +YN++I GYCK +++AV+ M G
Sbjct: 379 DARKIFEFMEEKAC-PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAG------------ 425
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YTT +DG K G + ++++ + +C I T LI G C IG
Sbjct: 426 -----CIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGD 480
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+F MQ+ GL P+VV Y ++I K+ + +A M PN
Sbjct: 481 TYSAEDLFAK-MQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPN 534
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 143/353 (40%), Gaps = 50/353 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P V +N LI G C G I L ++ P V+T+ + L E +
Sbjct: 114 PGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESL 173
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCK------DGFMMDQGMR----PDVVTLNVMTDNLSK 124
+ E P+V +I+ LCK M++Q ++ PDVVT N M +
Sbjct: 174 LGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCR 233
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+G + EA LL I+R + PN +Y L+ GF +G D+ +
Sbjct: 234 EGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMIT 293
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
LI+G V DA+ + +M + DA YN L +
Sbjct: 294 LGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEML 353
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
V PD +YTT IDG ++ + +A K+F + C I N +I G CK G +K
Sbjct: 354 EQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACP-DIVAYNVMIKGYCKFGMMK 412
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A M+ G PD TY ++ G+ K+G + LL DM + +PN
Sbjct: 413 EAVTCMSS-MRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPN 464
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 140/348 (40%), Gaps = 56/348 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEF 79
+++GLC EGR+ E L + C P + +N L L L EM +
Sbjct: 87 MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETK- 145
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
G+I P VVT II L + G M +G+ P+V N + + L K
Sbjct: 146 GII--PTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSAS 203
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
+A+ +L M++ NP+ T+NT++ GF +G + SY LI
Sbjct: 204 QASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLI 263
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G+C A L EM+ G D T L MA V
Sbjct: 264 HGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVM 323
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD+++Y I GL K + A + + K LIDG + +L A I
Sbjct: 324 PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKI 383
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F + + PD+V YN+MI G+CK G ++A + M + G P+
Sbjct: 384 FEFMEEKA--CPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPD 429
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 39/209 (18%)
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
VM L +G++EE L+E A W +GC YN+LI+
Sbjct: 86 VMVRGLCLEGRVEEGRGLIE---------------------ARWGEGCVPGAVFYNVLID 124
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
GYC+ ++ + L EM ++GI TY + I L + G +
Sbjct: 125 GYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAI-----------------IHWLGRKGDL 167
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+ + + ++ N +I+ LCK A D+ + ++++ PDVVT+N
Sbjct: 168 TKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSR-FNPDVVTFNT 226
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC+EG ++A LL + GLEPN
Sbjct: 227 MIAGFCREGDVREALKLLREAIRRGLEPN 255
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + D + + GL G V E + A CV N LIDG C+ G
Sbjct: 72 MLVREGGADDYSTCVMVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGD 131
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M+ G+ P VVTY +IH ++G K LL +M GL PN
Sbjct: 132 IGRGLLLLGE-METKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPN 185
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 38/181 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S LL ++ PN+ T+ SLI G C G A LF K+ PNV+ +
Sbjct: 444 GDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHY 503
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGL--CKDGFMMDQGMRP 110
L + A FE M+ C P+ T +++GL C+ G
Sbjct: 504 TVLIGSLFKKDKVIQAAAYFEHMLLNH---CPPNDATVHYLVNGLVNCRHG--------- 551
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEV---MIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
++ N S + E + LL+V +I ++P YN ++ CRH+
Sbjct: 552 ------MVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSL------CRHN 599
Query: 168 V 168
+
Sbjct: 600 M 600
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 51/356 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
FTP++VT+NSLI G G + E +F+++ CDP+VIT+N L + FE M
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL-INCFCKFERMPKA 344
Query: 79 FGVI-------CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F + KP+VVT + ID CK+G + + + P+ T + D
Sbjct: 345 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 404
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G + EA L+E ++Q + N TY L+DG A + G +
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------ 215
+Y L++G+ K + +E A + +EM + I+ D Y T+ + N
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 524
Query: 216 ------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ ++ +YTT +D +K+G EA+ + + + + T T LIDGLCK G
Sbjct: 525 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSG 584
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A F M GL P+V Y ++ G CK + A L +M + G+ P+
Sbjct: 585 LVQEAMHHFGR-MSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPD 639
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
P F++L L G + EA+ F K+ F P + N L + +L +
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ G K V T +ID LCK+G M + G PD+VT N + D
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K G ++E C+ E M D +P+ TYN L++ F + + G + +V
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y+ I+ +CK+ +++A+ +M R A T P+ YT+ ID
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDM-----RRVALT------------PNEFTYTSLIDA 404
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G + EA+K+ I L + T L+DGLC+ GR+K A ++F ++ N G+ P
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML-NAGVAP 463
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TY ++HGF K + + A +L +M+E ++P+
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 499
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 154/354 (43%), Gaps = 54/354 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F L + + PN+VT+++ I C EG + EA + F + PN T+
Sbjct: 340 RMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYT 399
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+L AL L EE++ G+ K +VVT T ++DGLC++G M
Sbjct: 400 SLIDANCKAGNLAEALKLVEEILQA-GI--KLNVVTYTALLDGLCEEGRMKEAEEVFRAM 456
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
++ G+ P+ T + K +ME A +L+ M ++ + P+ Y T++ G S+
Sbjct: 457 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRL 516
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G + Y L++ Y K +A++L EML G+ A TY L
Sbjct: 517 EEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCAL 576
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL K+G V EAM F + + L+DGLCK
Sbjct: 577 -----------------IDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNN 619
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
++A +F ++ + G+ PD + Y +I G K G Q+A L M E G+E
Sbjct: 620 CFEVAKKLFDEML-DKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGME 672
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 48/351 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L+ IL + N+VT+ +L+ GLC EGR+ EA +F+ + PN T+
Sbjct: 409 GNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETY 468
Query: 62 NTLA-----LVALNLFEEMVNEFGVIC-KPDVVTCTNIIDGLCKD----------GFMMD 105
L + ++++ E C KPD++ I+ GLC + G + +
Sbjct: 469 TALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 528
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
G+ + V + D K G+ EA LLE M+ + TY L+DG
Sbjct: 529 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQE 588
Query: 157 ----FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
F S+ G + +V Y L++G CK+ E A L EML +G+
Sbjct: 589 AMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM----------- 637
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD YT IDG K+G + EA+ + + L + LI GL G++
Sbjct: 638 ------PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQV 691
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ A ++ ++ G+ PD V Y +I + G+ +A L +M + G+
Sbjct: 692 QKARNLLDEMI-GKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 5/182 (2%)
Query: 148 CTYNTLMDGFAWWSKG---CRHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADA 203
C L F W+KG +H +Y IL++ R DA ++ +E++ +
Sbjct: 109 CQDARLALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSW 168
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
++ L+ N P V+ L + G + EA + F + + +CN L+
Sbjct: 169 DVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLH 228
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
L K+GR ++ F M G+ V TYNIMI CKEG + A L M+E G
Sbjct: 229 RLSKVGRGDLSRKFFKD-MGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFT 287
Query: 324 PN 325
P+
Sbjct: 288 PD 289
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 156/355 (43%), Gaps = 59/355 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ PN+VT+ SL+ GLC G++ EA LF ++ C P+ + +N L
Sbjct: 109 LLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFS 168
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A LFEEM+ + C P V T +++ G + G M+ QG P
Sbjct: 169 KKGDMGEAYRLFEEMLEKG---CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH---- 166
++ T N + D K G M EA+ L M P+ +YNTLM G SKG H
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC--SKGKPHEAQR 283
Query: 167 ------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
D+ SYNILI+GY K ++ A+ L E+ G+ DA +Y+T+
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLC 343
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M N PD+ V + GL + + E+ ++F A+ +CV I
Sbjct: 344 RAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIP 403
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
N L+ LCK R +IFH L + G +PDV +++ + + A
Sbjct: 404 EYNLLMYKLCKAKRSDDVCEIFHELTER-GFSPDVEISKVILETLRRSDDKEAAE 457
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/335 (28%), Positives = 153/335 (45%), Gaps = 55/335 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
PN T+ L++ LC R EA +F+ + C PNV +++ L A
Sbjct: 49 VPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAE 108
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
L EM++ +P+VVT +++ GLCK G M+ +G PD V NV+ D
Sbjct: 109 LLNEMIDGGH---QPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLID 165
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
SK G M EA L E M+++ P TYN+L+ GF+ +GC
Sbjct: 166 GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVP 225
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+++++N L++G+CK ++ +A L EM S G D +YNTL
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLL 285
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + V PD Y IDG K+G + A+K+F I + + +ID LC+
Sbjct: 286 REMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRA 345
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
G++ A+ +F ++ N G PD ++ G C+
Sbjct: 346 GKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCR 379
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 159/365 (43%), Gaps = 50/365 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
V G C +PN+ +++ LI GLC ++ EAA L ++ PNV+T+ +L L
Sbjct: 74 VFRGMAAQGC-SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132
Query: 67 VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
+ +E V+ F + C PD V +IDG K G M+++G P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
T N + S+ G+ L + M+++ PN T+N L+DGF
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN----------- 207
S GC DV SYN L+ G C +A L REM+ G+ D +YN
Sbjct: 253 MRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312
Query: 208 -----TLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
LF I + + PD+ Y+T ID L + G V A VF + +
Sbjct: 313 LDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIP 372
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ GLC+ RL + ++F +++ P + YN++++ CK + + ++ E
Sbjct: 373 LVIGLCRGERLTESCELFQAMVKFE-CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431
Query: 321 GLEPN 325
G P+
Sbjct: 432 GFSPD 436
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 137/318 (43%), Gaps = 55/318 (17%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGV 81
+++N L++ L GR + + C PN T+ L +L FEE
Sbjct: 18 LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEE------- 70
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++ G M QG P+V + +++ L + K++EA LL MI
Sbjct: 71 --------ARSVFRG------MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDG 116
Query: 142 DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDA 187
PN TY +L+ G K GC D YN+LI+G+ K ++ +A
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L EML +G TYN+L + G + G +F +
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSL-----------------LSGFSRKGEFGRVQSLFKDML 219
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
CV I T N L+DG CK+G + A +F + M++ G PDVV+YN ++ G C +G+
Sbjct: 220 RQGCVPNIFTFNNLLDGFCKMGDMVEAHRLF-LEMRSLGCPPDVVSYNTLMRGMCSKGKP 278
Query: 308 QKANGLLLDMEETGLEPN 325
+A LL +M +G+ P+
Sbjct: 279 HEAQRLLREMIRSGVGPD 296
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 25/194 (12%)
Query: 154 MDGFAWWSKGCR--HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
M F W H SYN L+ K + +ML G + TY L
Sbjct: 1 MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLR 60
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI--GNHKC 251
MA P+ Y+ I GL + V EA ++ + + G H+
Sbjct: 61 SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ- 119
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T L+ GLCK+G+LK A D+F ++ G PD V YN++I GF K+G +A
Sbjct: 120 -PNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYR-GCPPDGVVYNVLIDGFSKKGDMGEAY 177
Query: 312 GLLLDMEETGLEPN 325
L +M E G P
Sbjct: 178 RLFEEMLEKGCIPT 191
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 50/334 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
P++VTF +L+ GLC EGR+L+A L ++ P N L + ALNL +M
Sbjct: 8 PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKM 67
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
K VV IID LCKDG M D+G+ PDV+T + M D+ +
Sbjct: 68 EETH---IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRS 124
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-HDVY-------------SY 171
G+ +A LL MI+R +NP+ T++ L++ K ++Y +Y
Sbjct: 125 GRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITY 184
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N +I+G+CK + DA + M S+ D T++TL I+G
Sbjct: 185 NSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTL-----------------INGYC 227
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K V M++F + V T LI G C++G L A D+ ++++ + G+ P+
Sbjct: 228 KAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISS-GVAPNY 286
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+T+ M+ C + + +KA +L D++++ + P
Sbjct: 287 ITFQSMLASLCSKKELRKAFAILEDLQKSEVCPR 320
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 116/286 (40%), Gaps = 64/286 (22%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP----------------- 145
M++ G RPDVVT + + L +G++ +A L++ M++ P
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60
Query: 146 --------------NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
+ YN ++D KG DV +Y+ +I+
Sbjct: 61 LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPD 219
+C+ DA L R+M+ I D T++ L A+ + P
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ Y + IDG K + +A ++ ++ + C + T + LI+G CK R+ +IF
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF- 239
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ + VTY +IHGFC+ G A LL M +G+ PN
Sbjct: 240 CEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPN 285
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + PN T+NS+I LC GR++EA ++ + + P+ + + TL
Sbjct: 309 LMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFG 368
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
V LF+EM + V PD VT T++I GLC+ G M+ +G++P
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIV---PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKP 425
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT + D K G+M+EA L M+++ + PN TY L+DG
Sbjct: 426 DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELL 485
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
KG + +V +YN LING CK N+E AV L EM G D TY T+
Sbjct: 486 HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM 545
Query: 210 -----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P + ++G +G + + ++ + + + T
Sbjct: 546 GEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTF 605
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L+ C ++ +I+ M G+ PD TYNI+I G CK ++A L +M
Sbjct: 606 NSLMKQYCIRNNMRATIEIYKG-MHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMV 664
Query: 319 ETGL 322
E G
Sbjct: 665 EKGF 668
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 136/295 (46%), Gaps = 53/295 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +++ TPN+VT+ +L+ GLC G + A L +++ PNV T+
Sbjct: 441 GEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTY 500
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ L EEM + G PD +T T I+D CK G
Sbjct: 501 NALINGLCKVGNIEQAVKLMEEM-DLAGFF--PDTITYTTIMDAYCKMGEMAKAHELLRI 557
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G++P +VT NV+ + G +E+ L++ M+ + + PN T+N+LM +
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D +YNILI G+CK RN+++A L +EM+ +G A +YN+
Sbjct: 618 MRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNS 677
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
L I G YK EA K+F + H + E + +D
Sbjct: 678 L-----------------IKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVD 715
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 153/363 (42%), Gaps = 72/363 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S + L + P+ VT+ S+I GLC G+++EA +LF
Sbjct: 371 GNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLF--------------- 415
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
EM+++ G+ KPD VT T +IDG CK G M+++G+ P+
Sbjct: 416 -----------SEMLSK-GL--KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPN 461
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------- 161
VVT + D L K G+++ AN LL M ++ + PN CTYN L++G
Sbjct: 462 VVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLME 521
Query: 162 ----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
G D +Y +++ YCK + A L R ML +G++ T+N L
Sbjct: 522 EMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSG 581
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+M + P++ + + + + ++++ + V T N
Sbjct: 582 MLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYN 641
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
LI G CK +K AW H M G + +YN +I GF K + ++A L +M
Sbjct: 642 ILIKGHCKARNMKEAW-FLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRT 700
Query: 320 TGL 322
G
Sbjct: 701 HGF 703
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 151/334 (45%), Gaps = 51/334 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
+ F+ + L G +LEA +LF KL + +V + N N F+ + F V
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFR 241
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+ V G+C + V+ N++ L + GK++EA+ LL M R
Sbjct: 242 EYSEV-------GVCWN-----------TVSYNIILHLLCQLGKVKEAHSLLIQMEFRGN 283
Query: 144 NPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
P+ +Y+ ++DG+ KG + + Y+YN +I+ CK V +A
Sbjct: 284 VPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQ 343
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+ R M ++ I D Y TL M + PD YT+ I GL
Sbjct: 344 VLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLC 403
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G V+EA K+FS + + T LIDG CK G +K A+ + H M GLTP+V
Sbjct: 404 QAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL-HNQMVEKGLTPNV 462
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTY ++ G CK G+ AN LL +M E GL+PN
Sbjct: 463 VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 41/214 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG + LL +L P +VTFN L+ G C G + + RL K + PN T
Sbjct: 545 MGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATT 604
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
FN+L + ++ + + ++ I G M QG+ PD T N++
Sbjct: 605 FNSL-----------MKQYCI--RNNMRATIEIYKG------MHAQGVVPDTNTYNILIK 645
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
K M+EA L + M++ KG SYN LI G+ K
Sbjct: 646 GHCKARNMKEAWFLHKEMVE---------------------KGFSLTAASYNSLIKGFYK 684
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
+ E+A L EM + G A+ Y+ +F+ +N
Sbjct: 685 RKKFEEARKLFEEMRTHGFIAEKEIYD-IFVDVN 717
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 171/375 (45%), Gaps = 55/375 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F + R+ PN++TFNSL+ GLC ++ EA L K++ V P+ T
Sbjct: 259 VGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYT 318
Query: 61 FNTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
++ L L+ A+ L+E+ E G+ + + T + +++GLCK G +
Sbjct: 319 YSILFDGLLRCDDGNGAMELYEQ-ATEKGI--RINNYTGSILLNGLCKQGKVEKAEEILK 375
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+ G+ D V N + + G M +A +E M + PN+ T+N+L+D F
Sbjct: 376 KFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMK 435
Query: 158 ------AW----WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W KG V +YN LI+GY K + + +M G++ + +Y
Sbjct: 436 EMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYG 495
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M V P++ VY IDG G V +A++ F +
Sbjct: 496 SLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRS 555
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T+ T N LIDGLCK G+L A D F + + G +PDV+TYN +I G+ G K
Sbjct: 556 EISPTLVTYNVLIDGLCKKGKLTEAED-FLTQITSSGHSPDVITYNSLISGYANAGNVSK 614
Query: 310 ANGLLLDMEETGLEP 324
GL M+ G++P
Sbjct: 615 CLGLYETMKNLGIKP 629
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 52/339 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + + + R+ PN +TFNSLI C + +A KK+ P+V T
Sbjct: 399 IGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVET 458
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL ++ +G +C D C I++ M + G++P+VV+ + +
Sbjct: 459 YNTL-----------IDGYGKLCTFD--RCFQILEQ------MEEIGVKPNVVSYGSLIN 499
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDV-- 168
L KDGK+ EA +L MI R V PN YN L+DG ++ + R ++
Sbjct: 500 CLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISP 559
Query: 169 --YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+YN+LI+G CK + +A ++ S G D TYN+L
Sbjct: 560 TLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSL----------------- 602
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I G G V + + ++ + N T+ T + LI G K G +++ +++ ++Q
Sbjct: 603 ISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEG-IELVEKLYNEMLQ-MN 660
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD V YN MIH + + G QKA L M + G+ P+
Sbjct: 661 LLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPD 699
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 40/241 (16%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G+RP+V NV+ L ++ ++ +A + + M ++ + TYNTL+DG+
Sbjct: 202 MRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGE 261
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K ++ ++N L++G CK R +++A SL +E
Sbjct: 262 LDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKE--------------- 306
Query: 209 LFMAINNVPPDSHVYTTYIDGLYK----NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M +N PD + Y+ DGL + NG AM+++ + T + L++G
Sbjct: 307 --MEVNGFMPDGYTYSILFDGLLRCDDGNG----AMELYEQATEKGIRINNYTGSILLNG 360
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G+++ A +I +N GL D V YN ++G+C+ G KA + ME GL P
Sbjct: 361 LCKQGKVEKAEEILKKFTEN-GLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRP 419
Query: 325 N 325
N
Sbjct: 420 N 420
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 145/347 (41%), Gaps = 53/347 (15%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
F +L ++ PN+V++ SLI LC +G+ILEA + + + PN +N L
Sbjct: 476 FQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDG 535
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGM 108
AL F+EM+ P +VT +IDGLCK G + + G
Sbjct: 536 SCMVGKVKDALRFFDEMMRSE---ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGH 592
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV 168
PDV+T N + + G + + L E M + P TY+ L+ G + +
Sbjct: 593 SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKL 652
Query: 169 YS-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
Y+ YN +I+ Y + N + A SL + ML +GI D TYN+L +
Sbjct: 653 YNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLIL---- 708
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
G ++ G + + + + + +T + L+ G C + A+
Sbjct: 709 -------------GHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAY 755
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ +++N L P+ N + G +EG+ Q+ + +M G+
Sbjct: 756 VWYREMVENNFL-PNASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 35/241 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ ++ S +P +VT+N LI GLC +G++ EA ++ P+VIT
Sbjct: 539 VGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVIT 598
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N+L L L+E M N G+ KP V T +I G K+G
Sbjct: 599 YNSLISGYANAGNVSKCLGLYETMKN-LGI--KPTVRTYHPLISGCSKEGIELVEKLYNE 655
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + PD V N M ++ G ++A L + M+ + ++P+ TYN+L+ G
Sbjct: 656 MLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGK 715
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+K +Y+IL+ G+C ++ A REM+ +A+ N
Sbjct: 716 LSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNE 775
Query: 209 L 209
L
Sbjct: 776 L 776
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G R D + Y I K +N++ + M G+R P+ +
Sbjct: 171 GFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVR-----------------PNVFI 213
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I GL + + +A K+F + N V +I T N LIDG CK+G L A+ + M
Sbjct: 214 YNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRER-M 272
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + P+++T+N ++ G CK + ++A LL +ME G P+
Sbjct: 273 KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPD 315
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 167/376 (44%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK-LNVFCCDPNVIT 60
G S F L+ + P + T+N+LI GLC EG A R+ + L V C PN T
Sbjct: 273 GLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLC-PNAAT 331
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
FN + + A +F EM+ GV+ PD+++ ++I+ ++G
Sbjct: 332 FNPMLVESCRKEDVWEAERVFNEMLQR-GVV--PDLISFSSIVGVFSRNGELGRALAYFE 388
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M G+ PD V ++ + ++ + A + M++R + TYNTL++G
Sbjct: 389 KMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGK 448
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G D Y+ LI+GYCKD N+ A+SL M ++ D TYN
Sbjct: 449 MLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYN 508
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + P ++ I+G G V EA +++ +
Sbjct: 509 TLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEK 568
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T+ TCN +I G + G L A D + ++ G+ PD +TYN +I+ F KE +
Sbjct: 569 GIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISE-GVPPDCITYNTLINSFVKEENFDR 627
Query: 310 ANGLLLDMEETGLEPN 325
A L+ +MEE GL PN
Sbjct: 628 AFFLINNMEERGLLPN 643
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 160/367 (43%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+ +L P++++F+S++ G + A F+K+ P+ + + L
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC 410
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL + EMV E G C DVVT +++GLC+ M+++G+ P
Sbjct: 411 RNDDVSGALKMRNEMV-ERG--CVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFP 467
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW 160
D TL + KDG M +A L E M R + P+ TYNTLMDGF W
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW 527
Query: 161 SKGCRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+++ S++ILING+C V +A L EM +GI+ T NT+
Sbjct: 528 YDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M VPPD Y T I+ K A + + + + + T
Sbjct: 588 GNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTY 647
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N ++ G + GR++ A + H ++ + G+ PD TY +I+G+ + ++A + +M
Sbjct: 648 NAILGGFSRHGRMQEAEMVLHKMI-DKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEML 706
Query: 319 ETGLEPN 325
+ G P+
Sbjct: 707 QRGFVPD 713
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 122/282 (43%), Gaps = 68/282 (24%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+V TLN+M + L KDGK++ L M ++ V + TYNTL++ +
Sbjct: 223 NVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLV 282
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KG + +++YN LING CK+ + E A + EML G+ +A T+N +
Sbjct: 283 DCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRK 342
Query: 211 ------------MAINNVPPD-----------------------------------SHVY 223
M V PD + +Y
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T I+G +N V A+K+ + + CV+ + T N L++GLC+ L A ++F +++
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PD T +IHG+CK+G KA L M L+P+
Sbjct: 463 R-GVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPD 503
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 40/202 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L + P +VT N++IKG G + +A + P+ IT
Sbjct: 552 LGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCIT 611
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL +N F V N M ++G+ P++VT N +
Sbjct: 612 YNTL-----------INSF--------VKEENFDRAFFLINNMEERGLLPNLVTYNAILG 652
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
S+ G+M+EA +L MI + +NP+ TY + LINGY
Sbjct: 653 GFSRHGRMQEAEMVLHKMIDKGINPDKSTYTS---------------------LINGYVS 691
Query: 181 DRNVEDAVSLCREMLSEGIRAD 202
N+++A + EML G D
Sbjct: 692 KDNMKEAFRVHDEMLQRGFVPD 713
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 175/376 (46%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L +++ TP++V++N +I G C +G + +A + + PN IT
Sbjct: 444 LGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAIT 503
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
+ L A N+F++MV G++ P T +II+GLCK G +
Sbjct: 504 YTILMEGSFKKGDCEHAFNMFDQMVAA-GIV--PTDYTFNSIINGLCKVGRVSEARDKLN 560
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
+ Q P +T N + D K+G ++ A + M + +++PN TY +L++GF
Sbjct: 561 TFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSN 620
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG D+ Y LI G+CK +++E+A ++L G+ + YN
Sbjct: 621 KMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYN 680
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ A N +P D +YT+ IDGL K G + A+ ++S +
Sbjct: 681 IMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCR 740
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V I N LI+GLC G+L+ A I + N +TP V+ YN +I G KEG Q+
Sbjct: 741 GIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGN-NITPTVLLYNTLIAGHFKEGNLQE 799
Query: 310 ANGLLLDMEETGLEPN 325
A L +M + GL P+
Sbjct: 800 AFRLHDEMLDKGLVPD 815
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 142/334 (42%), Gaps = 53/334 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+ SLIKG C G + A RLF ++ PNV F+ L E ++ G
Sbjct: 326 NVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLI--------EWCSKIGN 377
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ K + + M G++P V LN + K +E A LL+ ++
Sbjct: 378 VEKANELYTR-----------MKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVEN 426
Query: 142 DVNPNTCTYNTLM----------DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
+ + TYN ++ + W KG + SYN +I G+CK ++DA
Sbjct: 427 GI-ASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDA 485
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ ++ G++ +A TY L M + P + + + I+G
Sbjct: 486 HEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIING 545
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G V EA + + T T NC+IDG K G + A ++ + ++ ++P
Sbjct: 546 LCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSE-ISP 604
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+V+TY +I+GFCK + A + DM+ GLE
Sbjct: 605 NVITYTSLINGFCKSNKMDLALKMHDDMKRKGLE 638
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 176/444 (39%), Gaps = 126/444 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP----- 56
G + L ++ TPN+ F+ LI+ G + +A L+ ++ P
Sbjct: 341 GDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFIL 400
Query: 57 -----------------------------NVITFNTLAL---------VALNLFEEMVNE 78
+V+T+N + L A NL+++M+
Sbjct: 401 NFLLKGFRKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMI-- 458
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVV--------------- 113
G P +V+ ++I G CK G M ++ G++P+ +
Sbjct: 459 -GKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDC 517
Query: 114 --------------------TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
T N + + L K G++ EA L I++ P + TYN +
Sbjct: 518 EHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCI 577
Query: 154 MDGF----------AWWSKGCRHD----VYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+DG+ + + + CR + V +Y LING+CK ++ A+ + +M +G+
Sbjct: 578 IDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGL 637
Query: 200 RADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLE-AM 240
D T Y TL + P++ VY I Y+N +E A+
Sbjct: 638 ELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISA-YRNLNNMEAAL 696
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + N+K ++ LIDGL K G+L A D++ ++ G+ PD+ YN++I+G
Sbjct: 697 NLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCR-GIVPDIFMYNVLING 755
Query: 301 FCKEGQHQKANGLLLDMEETGLEP 324
C GQ + A +L +M+ + P
Sbjct: 756 LCNHGQLENAGKILKEMDGNNITP 779
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 131/350 (37%), Gaps = 90/350 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD---PNV 58
G F + +++ + P TFNS+I GLC GR+ EA KLN F P
Sbjct: 515 GDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEAR---DKLNTFIKQSFIPTS 571
Query: 59 ITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFM--------- 103
+T+N + V + + + +C+ P+V+T T++I+G CK M
Sbjct: 572 MTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDD 631
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G+ D+ + K ME A +++ + PNT YN ++ +
Sbjct: 632 MKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNN 691
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ Y LI+G K+ + A+ L EML GI D YN
Sbjct: 692 MEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNV 751
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M NN+ P +Y T I G +K G + EA ++
Sbjct: 752 LINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRL-------- 803
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
H M + GL PD TY+I+++G
Sbjct: 804 ----------------------------HDEMLDKGLVPDDTTYDILVNG 825
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 32/236 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M++ G+ P V +NV+ + + +E+A+ L + M +R + + T LM
Sbjct: 178 MLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGK 237
Query: 157 -------FAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + +G + D SY+I+I C+ +++ A L EG
Sbjct: 238 FVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLV-----EGDEELGWV--- 289
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P Y I + G EA+++ + + + + + LI G C
Sbjct: 290 ---------PSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVR 340
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G + A +F +++ G+TP+V ++++I K G +KAN L M+ GL+P
Sbjct: 341 GDVNSALRLFDEVVE-VGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQP 395
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 153/336 (45%), Gaps = 48/336 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G ++ I P +V+FN+LI G C G + E RL + P+V T
Sbjct: 155 VGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFT 214
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMM 104
F+ L L +E F +C P+ VT T +IDG CK G M+
Sbjct: 215 FSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMML 274
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
QG+RPD+VT N + + L K G ++EA L+ M + P+ T+ TL+DG +
Sbjct: 275 AQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDME 334
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G D ++ +LI+G C+D V DA + R+MLS G +
Sbjct: 335 SALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFK---------- 384
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YT +D K G V K+ + + V + T N L++GLCK G+
Sbjct: 385 -------PDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 437
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+K A + ++ N G+ P+ +TYNI++ G K G
Sbjct: 438 VKNAKMLLDAML-NVGVAPNDITYNILLEGHSKHGS 472
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 158/343 (46%), Gaps = 50/343 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------AL 66
+L S + PN FN L+ G C G + A +F ++ P V++FNTL
Sbjct: 133 VLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGA 192
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
V + V E +C PDV T + +I+GLCK+G M +G+ P+ VT
Sbjct: 193 VEEGFRLKGVMESERVC-PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFT 251
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
V+ D K GK++ A ++M+ + V P+ TYN L++G +
Sbjct: 252 VLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS 311
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G R D ++ LI+G CK ++E A+ + R M+ EGI D +
Sbjct: 312 GLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAF---------------- 355
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
T I GL ++G V +A ++ + + T ++D CK G + + + + M
Sbjct: 356 -TVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKE-M 413
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q+ G P VVTYN +++G CK+GQ + A LL M G+ PN
Sbjct: 414 QSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPN 456
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 98/246 (39%), Gaps = 67/246 (27%)
Query: 2 GRASGGFVLLG-----RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP 56
G+ GG V L +L P++VT+N+LI GLC G + EA RL +++ P
Sbjct: 256 GQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRP 315
Query: 57 NVITFNTL---------ALVALNLFEEMVNE--------FGVIC---------------- 83
+ ITF TL AL + MV E F V+
Sbjct: 316 DRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERML 375
Query: 84 --------KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
KPD T T ++D CK G M G P VVT N + + L K
Sbjct: 376 RDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 435
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-----------SKGCRHDVYSYNIL 174
G+++ A LL+ M+ V PN TYN L++G + KG D SY L
Sbjct: 436 GQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNSEKGLVKDYASYTAL 495
Query: 175 INGYCK 180
+N K
Sbjct: 496 VNESSK 501
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 248 NHKCVLTIETCNCLIDGLCKIG--RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
NH + ++ C L+ + ++ L+ +W F++ + + G P+ +N+++HGFCK G
Sbjct: 98 NHLFPVPVQGCENLLRRVVRLRPVELERSW-AFYLEVLDSGYPPNFFFFNVLMHGFCKVG 156
Query: 306 QHQKANGLLLDMEETGLEP 324
A + ++ + GL P
Sbjct: 157 GVGSARLVFDEIPKRGLRP 175
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 159/338 (47%), Gaps = 49/338 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE---EMV 76
N+V +N LI GLC + ++ EA + K L P+V+T+ TL L + FE EM+
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMI 320
Query: 77 NE-FGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKD 125
+E + P +++++GL K G + + G+ P++ N + D+L K
Sbjct: 321 DEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKG 380
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
+EA L + M + + PN TY+ L+D F K G + VY Y
Sbjct: 381 RNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPY 440
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N LING+CK ++ A SL EM+++ + TY +L M
Sbjct: 441 NSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTG 500
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P + +TT + GL++ G + +A+K+F+ + T N +I+G C+ G +
Sbjct: 501 KGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSK 560
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
A++ + +++ G+ PD +Y +IHG C GQ +A
Sbjct: 561 AFEFLNEMIEK-GIVPDTYSYRPLIHGLCLTGQASEAK 597
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 175/376 (46%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L+ ++ P +VT+ SL+ G C++G+I +A RL+ ++ P++ TF
Sbjct: 451 GDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTF 510
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
TL L+ A+ LF EM E+ V KP+ VT +I+G C++G
Sbjct: 511 TTLLSGLFRAGLIRDAVKLFTEMA-EWNV--KPNRVTYNVMIEGYCEEGNMSKAFEFLNE 567
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G+ PD + + L G+ EA ++ + + + N Y L+ GF K
Sbjct: 568 MIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D+ Y +LI+G K ++ + + L +EM G++ D Y +
Sbjct: 628 LEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTS 687
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ A + P+ YT I+GL K GFV EA + S +
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGN 747
Query: 251 CVLTIETCNCLIDGLCK-IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V T C +D L K +G +K A ++ + +++ GL + TYN++I GFC++G+ ++
Sbjct: 748 SVPNQVTYGCFLDILTKGVGDMKKAVELHNAILK--GLLANTATYNMLIRGFCRQGRMEE 805
Query: 310 ANGLLLDMEETGLEPN 325
A+ L+ M G+ P+
Sbjct: 806 ASELITRMIGDGVSPD 821
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 163/357 (45%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV-- 76
P++ + +I+ LC + A + ++ CD N++ +N L L E V
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI 284
Query: 77 --NEFGVICKPDVVTCTNIIDGLCK-DGF-----MMDQGMR----PDVVTLNVMTDNLSK 124
+ G KPDVVT ++ GLCK F M+D+ +R P ++ + + L K
Sbjct: 285 KKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRK 344
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG------------------CRH 166
GK+EEA L++ + + V+PN YN L+D KG C +
Sbjct: 345 RGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLC---KGRNFDEAELLFDRMGKIGLCPN 401
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
DV +Y+ILI+ +C+ ++ A+S EM+ G++ YN+L
Sbjct: 402 DV-TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLM 460
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + P YT+ + G G + +A++++ + V +I T L+ GL +
Sbjct: 461 AEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRA 520
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A +F M + P+ VTYN+MI G+C+EG KA L +M E G+ P+
Sbjct: 521 GLIRDAVKLFTE-MAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPD 576
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 135/337 (40%), Gaps = 89/337 (26%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N + + L+ G C EG++ EA + + + + D +++ + L V L L
Sbjct: 611 NEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLL 670
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+EM ++ G+ KPD V T++ID K G M+++G P+ VT + + L
Sbjct: 671 KEM-HDRGL--KPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDV 168
K G + EA L M + PN TY +D KG +
Sbjct: 728 CKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANT 787
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+YN+LI G+C+ +E+A L M+ +G V PD YTT I
Sbjct: 788 ATYNMLIRGFCRQGRMEEASELITRMIGDG-----------------VSPDCITYTTMIS 830
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L + V +A++++++ M G+
Sbjct: 831 ELCRRNDVKKAIELWNS------------------------------------MTEKGIR 854
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD V YN +IHG C G+ KA L +M GL+PN
Sbjct: 855 PDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPN 891
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 34/271 (12%)
Query: 88 VTCTNIIDGLCKDGFMMDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
V ++DG+ MM + + P+V TL+ + L K A L + MI + P+
Sbjct: 167 VRSRRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPD 226
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y ++ + GC ++ YN+LI+G CK + V +AV + +
Sbjct: 227 VYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKK 286
Query: 193 EMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYKNG 234
++ + ++ D TY TL + V P ++ ++GL K G
Sbjct: 287 DLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRG 346
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V EA+ + + I N LID LCK GR ++ M GL P+ VTY
Sbjct: 347 KVEEALNLVKRVAEFGVSPNIFVYNALIDSLCK-GRNFDEAELLFDRMGKIGLCPNDVTY 405
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+I FC+ G+ A L +M + GL+P+
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMIDMGLKPS 436
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN VT+ ++I GLC G + EA L K+ PN +T+ L++ + V
Sbjct: 715 PNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCF----LDILTKGVG--- 767
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
D+ + + + K G+ + T N++ + G+MEEA+ L+ MI
Sbjct: 768 -----DMKKAVELHNAILK-------GLLANTATYNMLIRGFCRQGRMEEASELITRMIG 815
Query: 141 RDVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVED 186
V+P+ TY T++ W KG R D +YN LI+G C +
Sbjct: 816 DGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
Query: 187 AVSLCREMLSEGIRADATTYNT 208
A L EML +G++ + T T
Sbjct: 876 ATELRNEMLRQGLKPNTETSET 897
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 62/339 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF--KKLNV-FCCDPNVITFNT 63
+V R+ F M+ + +++ LC G EAA +F K L V F D +++T
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYT-EAAEMFMCKILKVGFLLDSHIVTSLL 237
Query: 64 LALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
L AL +F+ M E C P+ V+ + +I GLC+ G M ++
Sbjct: 238 LGFCRGLNLRDALKVFDLMSREG--TCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G +P T V+ L G +++A L + MI R GC+
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIAR---------------------GCKP 334
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V++Y +LI+G C+D +E+A +CR+M+ +GI TYN L
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNAL----------------- 377
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G K+G V+ A ++ + + C + T N L++GLC++G+ A + ++ N G
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-G 436
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+PD+V+YN++I G C+EG A LL M LEP+
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPD 475
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 166/377 (44%), Gaps = 59/377 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L ++ PN+ T+ LI GLC +G+I EA + +K+ P+VIT+
Sbjct: 315 GLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITY 374
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L + A L M CKP+V T +++GLC+ G
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKR---ACKPNVRTFNELMEGLCRVGKPYKAVHLLKR 431
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+D G+ PD+V+ NV+ D L ++G M A LL M D+ P+ T+ +++ F
Sbjct: 432 MLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGK 491
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR---------------- 192
KG D + LI+G C DA+ +
Sbjct: 492 ADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNV 551
Query: 193 --EMLSEGIRADATTYNTLFMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+MLS+G + + IN + P YTT +DGL ++G + + ++ +
Sbjct: 552 ILDMLSKGCKLKEEL--AMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKL 609
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
C+ + +I+GLC+ GR++ A + MQ+ G++P+ VTY +M+ G+ G+
Sbjct: 610 SGCLPNVYPYTIIINGLCQFGRVEEAEKLLSA-MQDSGVSPNHVTYTVMVKGYVNNGKLD 668
Query: 309 KANGLLLDMEETGLEPN 325
+A + M E G E N
Sbjct: 669 RALETVRAMVERGYELN 685
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 173/382 (45%), Gaps = 63/382 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL R+L + +P++V++N LI GLC EG + A +L +N F +P+ +T
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLT 478
Query: 61 FNTLALVALNLF-----EEMVNEF-GVICKP----DVVTCTNIIDGLCKDG------FMM 104
F + +N F ++ + F G++ + D VT T +IDG+C G F++
Sbjct: 479 FTAI----INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFIL 534
Query: 105 DQGMRPDVVT----LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+ ++ ++T LNV+ D LSK K++E +L + + + P+ TY TL+DG
Sbjct: 535 ETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRS 594
Query: 161 S--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC +VY Y I+ING C+ VE+A L M G+ + TY
Sbjct: 595 GDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654
Query: 207 NTLFMA-INNVPPDSHVYTTYI---------DGLYKN---GFVL----------EAMKVF 243
+ +NN D + T D +Y + GFVL E +K
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKEL 714
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
++ T C L+ LCK GR + + ++++ + +I++ +C
Sbjct: 715 ISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAI--DIIMESYCS 772
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+ +H K L+ + ++G P+
Sbjct: 773 KKKHTKCVELITLVLKSGFVPS 794
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 153/354 (43%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNT----LALVA-LNLFE 73
P++VT+N+L+ EGR + A L K++ C PN +T N LA L
Sbjct: 235 PSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAA 294
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
EMV + K T +I GL GF M ++G+ P VVT N M L
Sbjct: 295 EMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLL 354
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G++E A M + P+ TYN+L++G+ G V
Sbjct: 355 QSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVL 414
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+YNILI+GYC+ ++E+A L EM+ +G D TY L +N
Sbjct: 415 TYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEM 474
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD Y T I G + +A ++ + T N LIDGLCK G L
Sbjct: 475 LSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNL 534
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+ M M + GL PD +TY +IH C+ G ++A DM GL P+
Sbjct: 535 NDAKDL-QMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPS 587
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 153/349 (43%), Gaps = 49/349 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF--- 79
T+N LI GL +G + +A L ++ P V+T+N + L+ E +F
Sbjct: 310 TYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEM 369
Query: 80 -GVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
+ +PDV+T ++++G CK G + + G+ P V+T N++ D + G +
Sbjct: 370 RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDL 429
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
EEA L E M+++ P+ CTY LM G SKG + D ++YN
Sbjct: 430 EEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTR 489
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I + A L M+ EGI +D TYN L M N +
Sbjct: 490 IRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGL 549
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD YT I + G + EA K F + + + T I C+ G L A+
Sbjct: 550 QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYG 609
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +++ G+ P+ +TYN++IH C+ G+ Q A +M E GL PN
Sbjct: 610 WFRKMLEE-GVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPN 657
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 54/333 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +L G + + P ++T+N LI G C G + EA RL +++ C P+V T+
Sbjct: 392 GSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTY 451
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIID-----GLCKDGF----- 102
L +A F+EM+++ G+ +PD I G F
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSK-GL--QPDCFAYNTRIRAELTLGAIAKAFRLREV 508
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
MM +G+ D VT N++ D L K G + +A L M+ + P+ TY L+
Sbjct: 509 MMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGL 568
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G +Y + I+ YC+ N+ A R+ML EG+ + TYN
Sbjct: 569 LREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 628
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I L + G A + F + V T LIDG CK
Sbjct: 629 L-----------------IHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKE 671
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
G + A + + QN G+ PD +T+ + GF
Sbjct: 672 GNWEDAMRFYFEMHQN-GIHPDYLTHKALFKGF 703
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 45/259 (17%)
Query: 85 PDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
PD TC+ LC F M G+ PDV N + LS + ++ + M+Q
Sbjct: 179 PD--TCST----LCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLG 232
Query: 143 VNPNTCTYNTLMDGFAWWSK----------------GCRHDVYSYNILINGYCKDRNVED 186
+ P+ TYNTL+D F + GC + ++N++I G + ++E+
Sbjct: 233 IEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEE 292
Query: 187 AVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
A + M LS+ +A + TYN L I GL GFV +A +
Sbjct: 293 AAEMVEGMRLSK--KASSFTYNPL-----------------ITGLLAKGFVKKADDLQLE 333
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ N + T+ T N +I GL + G+++ A F + M+ GL PDV+TYN +++G+CK G
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKF-VEMRAMGLQPDVITYNSLLNGYCKAG 392
Query: 306 QHQKANGLLLDMEETGLEP 324
++A L D+ GL P
Sbjct: 393 SLKEALLLFGDLRHAGLAP 411
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 43/234 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + F L +++ + + VT+N LI GLC G + +A L K+ P+ IT
Sbjct: 496 LGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCIT 555
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A F++M+++ G+ P VT T I C+ G
Sbjct: 556 YTCLIHAHCERGLLREARKFFKDMISD-GL--APSAVTYTVFIHAYCRRGNLYSAYGWFR 612
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+++G+ P+ +T NV+ L + G+ + A M++R + PN
Sbjct: 613 KMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNK-------------- 658
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
Y+Y +LI+G CK+ N EDA+ EM GI D T+ LF +
Sbjct: 659 -------YTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGFDE 705
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 168/347 (48%), Gaps = 48/347 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +L ++MS P+++T+N ++ G C ++ A L + +++ C P+VIT
Sbjct: 70 IGRIERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVIT 129
Query: 61 FNTL--ALVALNLFEEMVN----EFGVICKPDVVTCTNIIDGLCKD----------GFMM 104
+NT+ +L F++ V + C P ++ T +I+ + K M
Sbjct: 130 YNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMA 189
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS 161
+G PD+VT N + + SK+GK E+A ++ ++ + PN TYN+L+ W
Sbjct: 190 IEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWD 249
Query: 162 ---------KGCRHD--VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
K H V +YNILING CK VE A++ +M+SE D TYNTL
Sbjct: 250 EVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLL 309
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
A L K G V EA++VF + + C + T N +IDGL + G
Sbjct: 310 TA-----------------LCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGY 352
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ A +++ +++ G+ PD +T+ ++ GFC Q + A +L +M
Sbjct: 353 MDEALKLYNQMIEK-GIAPDGITHRSLVWGFCWIDQVEDAVEILREM 398
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 51/350 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI 82
T N ++ LC +G ++EA +L ++ PN L LV + E +
Sbjct: 24 TNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM 83
Query: 83 CK----PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKM 128
PDV+T ++ G CK + G PDV+T N + +L +GK
Sbjct: 84 VMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKF 143
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNI 173
++A ++R P Y L++ W +GC D+ +YN
Sbjct: 144 DQAVEFWRGQLRRGCLPYLIPYTILIE-LVWKHCGTVRALEVLEDMAIEGCYPDLVTYNS 202
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
L+N K+ EDA + +LS G+ +A TYN+L M +
Sbjct: 203 LVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTS 262
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PP Y I+GL K G V A+ F + + C I T N L+ LCK G + A
Sbjct: 263 HPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEAL 322
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F +L+ + +P ++TYN +I G + G +A L M E G+ P+
Sbjct: 323 QVF-VLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPD 371
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 55/288 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +++ IL PN +T+NSL+ LC+ G E + + P V+T+
Sbjct: 211 GKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTY 270
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
N L LV A+N F +MV+E C PD++T ++ LCK+G M+D+ ++
Sbjct: 271 NILINGLCKCGLVERAINFFVQMVSEN---CSPDIITYNTLLTALCKEG-MVDEALQVFV 326
Query: 110 --------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW- 160
P ++T N + D L++ G M+EA L MI++ + P+ T+ +L+ GF W
Sbjct: 327 LLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWID 386
Query: 161 -------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ R + +Y ++ING C+++ V+ A+ + M+S
Sbjct: 387 QVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMIS----------- 435
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
PD +Y+T I + G V EA ++ + K + TI
Sbjct: 436 ------GRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLRTI 477
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 40/233 (17%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D T N + NL K G + EA L+++M + + PN+ L+ G +
Sbjct: 21 DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G DV +YN+++ G+CK R + A+ L +M +++
Sbjct: 81 KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDM-----------------SLSGC 123
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK----IGRLK 272
PPD Y T I L+ NG +A++ + C+ + LI+ + K + L+
Sbjct: 124 PPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALE 183
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ D M G PD+VTYN +++ KEG+++ A ++ ++ G+EPN
Sbjct: 184 VLED-----MAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPN 231
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V D + L K G ++EA K+ + + LI GL +IGR++ A
Sbjct: 18 VENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERAS 77
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ + GL PDV+TYN+M+ GFCK Q + A LL DM +G P+
Sbjct: 78 RVLKTMVMS-GLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPD 126
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 164/372 (44%), Gaps = 54/372 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G L G IL + + +T N+L+K LC R EA L +++ C PN +++
Sbjct: 172 RPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSY 231
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N+++ AL+L + M + G C PDVV + +I G +G
Sbjct: 232 SIVLKALCDNSMSQRALDLLQMMAKQGGA-CSPDVVAYSTVIHGFFNEGETGKACSLFHE 290
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M QG++PDVVT N++ D L K M++A +L M P+T TY+ ++ G+A
Sbjct: 291 MTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGR 350
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G ++ + N + CK ++A M ++G + D +Y T
Sbjct: 351 LKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCT 410
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N + + HV+T I K G V +AM +F+ +
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T + +I ++GRL A + F+ ++ G+ P+ Y+ +I GFC G KA
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVAR-GIQPNTAVYSSIIQGFCMHGGLVKA 529
Query: 311 NGLLLDMEETGL 322
L+ +M G+
Sbjct: 530 KELVSEMINKGI 541
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++VT++++I GR+ +A F ++ PN ++++ + A
Sbjct: 472 SPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKE 531
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
L EM+N+ I +PD+V +++I+ LCKDG +MD G RP V+T N + D
Sbjct: 532 LVSEMINK--GIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLID 589
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
GKM++A +L+ M V P+ TYNTL+D GY K
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLD---------------------GYFK 628
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDSH--------------V 222
+ + D ++L REM +G++ + TY LF A V +
Sbjct: 629 NGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSI 688
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y + GL +N EA+ +F +G +I N +I+ + K+ R + A ++F +
Sbjct: 689 YGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATIS 748
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ GL P+ TY +MI K+G + AN + ME++G+ P
Sbjct: 749 AS-GLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVP 789
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 173/395 (43%), Gaps = 95/395 (24%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
+P++V ++++I G EG +A LF ++ P+V+T+N + A++ E
Sbjct: 262 SPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAEL 321
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
++ + +PD VT + +I G G M +G+ P++VT N +L
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC 381
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV--------------- 168
K G+ +EA + M + P+ +Y TL+ G+A S+GC D+
Sbjct: 382 KHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYA--SEGCFADMIGLFNSMKSNGIAAN 439
Query: 169 -YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ + ILI+ Y K V+DA+ + EM +G+ D TY+T+
Sbjct: 440 CHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFN 499
Query: 211 -MAINNVPPDSHVYTTYIDG------------------------------------LYKN 233
M + P++ VY++ I G L K+
Sbjct: 500 QMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKD 559
Query: 234 GFVLEAMKVF---SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G V++A +F + IG V+T N LIDG C +G++ A+ I M+ G+ PD
Sbjct: 560 GRVMDAHDIFDLATDIGERPGVITF---NSLIDGYCLVGKMDKAFKILDA-MEVVGVEPD 615
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VTYN ++ G+ K G+ L +M+ G++PN
Sbjct: 616 IVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 36/216 (16%)
Query: 145 PNTCTYNTLMD----------GFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSL 190
P CTYN LMD G A + G + D + N L+ C E+AV++
Sbjct: 155 PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNV 214
Query: 191 CREMLSE-GIRADATTYNTLFMAI--------------------NNVPPDSHVYTTYIDG 229
+SE G +A +Y+ + A+ PD Y+T I G
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ G +A +F + + T N +ID LCK + A + M G P
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQ-MTTDGAQP 333
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D VTY+ MIHG+ G+ ++A + +M++ GL PN
Sbjct: 334 DTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPN 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 110/291 (37%), Gaps = 60/291 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F +L + + P++VT+N+L+ G GRI + LF+++ PN +T
Sbjct: 594 VGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVT 653
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQ 106
+ + + A F EM+ E G + I+ GLC+ + ++ Q
Sbjct: 654 YGIMLAGLFRAGRTVAARKKFHEMI-ESGTTVTVSIYGI--ILGGLCRNNCADEAIILFQ 710
Query: 107 GM-----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ + + LN M + + K + EEA L + + PN T
Sbjct: 711 KLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNEST------------ 758
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
Y ++I KD VEDA ++ M GI P S
Sbjct: 759 ---------YGVMIINLLKDGGVEDANNMFSSMEKSGI-----------------VPGSR 792
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ I L + G + +A S + + +L T + ++ + G+ +
Sbjct: 793 LLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQ 843
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 169/378 (44%), Gaps = 66/378 (17%)
Query: 7 GFVLLGRILM-----SCFTPNMVTFNSLIKGLCTE---GRILEAARLFKKLNVFCCDPNV 58
G V +GR LM N+VT+N+ I+G G + E L +K V C NV
Sbjct: 239 GDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC---NV 295
Query: 59 ITFNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
+T+ L A LFEEM E G+ + DV T+II C+ G
Sbjct: 296 VTYTLLIHGFSNIGKIEEAQRLFEEM-REKGI--EADVYVYTSIISCNCRSGNVKRALVL 352
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M D+G+ P T + + K G+ME A L+ M + ++ N +NTL+DG+
Sbjct: 353 FDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCE 412
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG DV++YN + +G CK ++A L M+ G+ + +
Sbjct: 413 SGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMS 472
Query: 206 YNTL---------FMAINNV---------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+ TL F+ V P+ Y IDG K G + EA K+ +
Sbjct: 473 FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE 532
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
N + + TC LI G C G++ +A +F + Q GL P+VVTY MI G K+G+
Sbjct: 533 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR-GLVPNVVTYTAMISGLSKDGRS 591
Query: 308 QKANGLLLDMEETGLEPN 325
++A L +M+ETGL P+
Sbjct: 592 EEAFKLYDEMKETGLTPD 609
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 147/342 (42%), Gaps = 83/342 (24%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+VT+ LI G G+I EA RLF+++ + +V + ++ AL LF
Sbjct: 294 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 353
Query: 73 EEMVNE--------FGV----ICKP--------------------DVVTCTNIIDGLCKD 100
+EM ++ +G +CK + V +IDG C+
Sbjct: 354 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCES 413
Query: 101 GF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
G M +G+ DV N + L K + +EA LL M++R V+PNT ++
Sbjct: 414 GMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSF 473
Query: 151 NTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
TL+D + KG ++ +YN+LI+GY K N+++A L E+ +
Sbjct: 474 TTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELEN 533
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
G+ PD + T+ I G +G V A+K+F + V +
Sbjct: 534 RGL-----------------IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 576
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
T +I GL K GR + A+ ++ M+ GLTPD Y+ ++
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDE-MKETGLTPDDTVYSSLV 617
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 45/281 (16%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVM 118
L F MVN + + V + T ++DGLCK G +MD+ G++ +VVT N
Sbjct: 210 LRFFRRMVN---LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAF 266
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
+ K + +L +M + V N TY L+ GF+ KG
Sbjct: 267 IEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGI 326
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DVY Y +I+ C+ NV+ A+ L EM +G+ P +H Y
Sbjct: 327 EADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGL-----------------IPSAHTYG 369
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I G+ K G + A + + + L N LIDG C+ G + A + ++M+
Sbjct: 370 ALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL-QVVMEK 428
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL DV YN + G CK + +A GLL M E G+ PN
Sbjct: 429 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 469
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 22/164 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ +PN ++F +LI C EG +EA R+F+++ PN+IT+N L
Sbjct: 457 LLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 516
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A L +E+ N G+I PDV TCT++I G C DG M +G+ P
Sbjct: 517 KRGNMKEAHKLKDELENR-GLI--PDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP 573
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+VVT M LSKDG+ EEA L + M + + P+ Y++L+
Sbjct: 574 NVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN-- 77
N V FN+LI G C G + EA RL + + +V +N++A L LN +E
Sbjct: 399 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 458
Query: 78 ----EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E GV P+ ++ T +ID CK+G M ++G P+++T NV+ D S
Sbjct: 459 FSMVERGV--SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 516
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G M+EA+ L + + R + P+ T +L+ G +G +V
Sbjct: 517 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 576
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+Y +I+G KD E+A L EM G+ D T Y++L ++++
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 34/134 (25%)
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH------ 279
Y+ L + G V ++ F + N +T+ + ++DGLCK G +++ +
Sbjct: 196 YLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKG 255
Query: 280 ----------------------------MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
LM+ G+ +VVTY ++IHGF G+ ++A
Sbjct: 256 VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 315
Query: 312 GLLLDMEETGLEPN 325
L +M E G+E +
Sbjct: 316 RLFEEMREKGIEAD 329
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 168/377 (44%), Gaps = 57/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F ++ + + P++ T+N LI G+C G I E L + P+V+T
Sbjct: 288 LGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVT 347
Query: 61 FNT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+NT L+L A L E+M N+ GV KP+ VT + LCK+ +
Sbjct: 348 YNTLIDGCFELGLSLEAKKLMEQMEND-GV--KPNQVTHNISLKWLCKEEKREEVTRKVK 404
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
G PD+VT + + K G + A ++ M Q+ + NT T NT++D
Sbjct: 405 ELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ +G D +Y LI GY ++ VE A + EM I TT+
Sbjct: 465 RKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTF 524
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N+L +A + + PD + + I G K G V +A + ++
Sbjct: 525 NSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIK 584
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
H TCN L++GLCK G + A + F+ L+ + D VTYN MI FCK+ + +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV--DTVTYNTMISAFCKDKKLK 642
Query: 309 KANGLLLDMEETGLEPN 325
+A LL +MEE LEP+
Sbjct: 643 EAYDLLSEMEEKRLEPD 659
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 59/343 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ F+ + G+ A ++F+K+ PN++T NTL + G
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLI-------------G 175
Query: 81 VICKP---DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
++ P + + + D + K G + DV T NV+ + +GK+E+A +LE
Sbjct: 176 LVRYPSSFSIASAREVFDDMVKIGVSL------DVKTFNVLVNGYCLEGKLEDALGMLER 229
Query: 138 MIQR-DVNPNTCTYNTLMDGFAWWSKGCRHDV----------------YSYNILINGYCK 180
M+ +VNP+ TYNT++ A KG DV +YN L+ GYCK
Sbjct: 230 MVSEFNVNPDNVTYNTILK--AMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCK 287
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHV 222
++++A + M I D TYN L + N + PD
Sbjct: 288 LGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVT 347
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T IDG ++ G LEA K+ + N T N + LCK + + L+
Sbjct: 348 YNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELV 407
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G +PD+VTY+ +I + K G A ++ +M + G++ N
Sbjct: 408 EMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMN 450
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 35/245 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG ++ + N +T N+++ LC E ++ EA L + + +T
Sbjct: 429 VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVT 488
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL + A +++EM + P V T ++I GLC G
Sbjct: 489 YGTLIMGYFREEKVEKAFEMWDEMKR---IKITPTVTTFNSLIGGLCHHGKTELAMEKFD 545
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+ + G+ PD T N + K+G++E+A I+ P+ T N L++G
Sbjct: 546 ELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F D +YN +I+ +CKD+ +++A L EM + + D TYN+
Sbjct: 606 MTEKALNFFNTLITEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNS 665
Query: 209 LFMAI 213
+ ++
Sbjct: 666 IITSL 670
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALV 67
S P+ TFNS+I G C EGR+ +A + + P+ T N L
Sbjct: 550 SGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEK 609
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNV 117
ALN F ++ E V D VT +I CKD M ++ + PD T N
Sbjct: 610 ALNFFNTLITEREV----DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNS 665
Query: 118 MTDNLSKDGKMEEANCLLE 136
+ +L +DGK+ EA+ LL+
Sbjct: 666 IITSLMEDGKLSEADELLK 684
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
R + ++SLC +L + PP ++ + G A++
Sbjct: 106 RTSDASLSLCNSLLHPNLHLSP-------------PPSKALFDIALSAYLHAGKPHVALQ 152
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIG---RLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
VF + K + TCN L+ GL + + A ++F +++ G++ DV T+N+++
Sbjct: 153 VFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVK-IGVSLDVKTFNVLV 211
Query: 299 HGFCKEGQHQKANGLLLDM 317
+G+C EG+ + A G+L M
Sbjct: 212 NGYCLEGKLEDALGMLERM 230
>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 169/378 (44%), Gaps = 66/378 (17%)
Query: 7 GFVLLGRILM-----SCFTPNMVTFNSLIKGLCTE---GRILEAARLFKKLNVFCCDPNV 58
G V +GR LM N+VT+N+ I+G G + E L +K V C NV
Sbjct: 243 GDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC---NV 299
Query: 59 ITFNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
+T+ L A LFEEM E G+ + DV T+II C+ G
Sbjct: 300 VTYTLLIHGFSNIGKIEEAQRLFEEM-REKGI--EADVYVYTSIISCNCRSGNVKRALVL 356
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
M D+G+ P T + + K G+ME A L+ M + ++ N +NTL+DG+
Sbjct: 357 FDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCE 416
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG DV++YN + +G CK ++A L M+ G+ + +
Sbjct: 417 SGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMS 476
Query: 206 YNTL---------FMAINNV---------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+ TL F+ V P+ Y IDG K G + EA K+ +
Sbjct: 477 FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE 536
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
N + + TC LI G C G++ +A +F + Q GL P+VVTY MI G K+G+
Sbjct: 537 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQR-GLVPNVVTYTAMISGLSKDGRS 595
Query: 308 QKANGLLLDMEETGLEPN 325
++A L +M+ETGL P+
Sbjct: 596 EEAFKLYDEMKETGLTPD 613
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 147/342 (42%), Gaps = 83/342 (24%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+VT+ LI G G+I EA RLF+++ + +V + ++ AL LF
Sbjct: 298 NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLF 357
Query: 73 EEMVNE--------FGV----ICKP--------------------DVVTCTNIIDGLCKD 100
+EM ++ +G +CK + V +IDG C+
Sbjct: 358 DEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCES 417
Query: 101 GF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
G M +G+ DV N + L K + +EA LL M++R V+PNT ++
Sbjct: 418 GMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSF 477
Query: 151 NTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
TL+D + KG ++ +YN+LI+GY K N+++A L E+ +
Sbjct: 478 TTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELEN 537
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
G+ PD + T+ I G +G V A+K+F + V +
Sbjct: 538 RGL-----------------IPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 580
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
T +I GL K GR + A+ ++ M+ GLTPD Y+ ++
Sbjct: 581 TYTAMISGLSKDGRSEEAFKLYDE-MKETGLTPDDTVYSSLV 621
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 121/281 (43%), Gaps = 45/281 (16%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVM 118
L F MVN + + V + T ++DGLCK G +MD+ G++ +VVT N
Sbjct: 214 LRFFRRMVN---LDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAF 270
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
+ K + +L +M + V N TY L+ GF+ KG
Sbjct: 271 IEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGI 330
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DVY Y +I+ C+ NV+ A+ L EM +G+ P +H Y
Sbjct: 331 EADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGL-----------------IPSAHTYG 373
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I G+ K G + A + + + L N LIDG C+ G + A + ++M+
Sbjct: 374 ALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRL-QVVMEK 432
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL DV YN + G CK + +A GLL M E G+ PN
Sbjct: 433 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPN 473
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 22/164 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL ++ +PN ++F +LI C EG +EA R+F+++ PN+IT+N L
Sbjct: 461 LLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 520
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A L +E+ N G+I PDV TCT++I G C DG M +G+ P
Sbjct: 521 KRGNMKEAHKLKDELENR-GLI--PDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVP 577
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+VVT M LSKDG+ EEA L + M + + P+ Y++L+
Sbjct: 578 NVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVN-- 77
N V FN+LI G C G + EA RL + + +V +N++A L LN +E
Sbjct: 403 NPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLL 462
Query: 78 ----EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
E GV P+ ++ T +ID CK+G M ++G P+++T NV+ D S
Sbjct: 463 FSMVERGV--SPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 520
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G M+EA+ L + + R + P+ T +L+ G +G +V
Sbjct: 521 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 580
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+Y +I+G KD E+A L EM G+ D T Y++L ++++
Sbjct: 581 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 627
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 34/134 (25%)
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH------ 279
Y+ L + G V ++ F + N +T+ + ++DGLCK G +++ +
Sbjct: 200 YLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKG 259
Query: 280 ----------------------------MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
LM+ G+ +VVTY ++IHGF G+ ++A
Sbjct: 260 VKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQ 319
Query: 312 GLLLDMEETGLEPN 325
L +M E G+E +
Sbjct: 320 RLFEEMREKGIEAD 333
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 147/333 (44%), Gaps = 51/333 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G+ LL I + T+ + +KG+C+ G + A + K++ C PNV+ + TL
Sbjct: 404 GYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIK 463
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
L + FG D V M +QG+ PD N + LSK
Sbjct: 464 TFLQ-----KSRFG-----DAVRVLKE---------MREQGIAPDTFCYNSLIIGLSKAK 504
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL------------ 174
KM+EA L M++ P+ TY + G+ + D Y +L
Sbjct: 505 KMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCT 564
Query: 175 --INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
IN YCK V +A S R M+ +GI DA TY L ++GL K
Sbjct: 565 GLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVL-----------------MNGLVK 607
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
NG V +A ++F + + + LIDG K+G ++ A IF ++Q GLT +V+
Sbjct: 608 NGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ-AGLTSNVI 666
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN+++ GFC+ G+ +KA LL +M G PN
Sbjct: 667 IYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPN 699
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 171/410 (41%), Gaps = 89/410 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + ++ + S PN+V + +LIK + R +A R+ K++ P+ +
Sbjct: 434 GDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCY 493
Query: 62 NTLAL---------VALNLFEEMVN---------------------EFGVICK------- 84
N+L + A + EMV EF K
Sbjct: 494 NSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLE 553
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P+ V CT +I+ CK G M++QG+ D T V+ + L K+GK+ +
Sbjct: 554 CGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVND 613
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILIN 176
A + M + + P+ +Y TL+DGF+ G +V YN+L+
Sbjct: 614 AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLG 673
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+C+ +E A L EM +G +A TY T+ M + + P
Sbjct: 674 GFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVP 733
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDI 277
DS VYTT +DG + V A+ +F N K C + N LI+ + K G+ ++ D+
Sbjct: 734 DSFVYTTLVDGCCRLNDVERAITIFET--NEKGCASSSAPFNALINWVFKFGKTELTTDM 791
Query: 278 FHMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ LM + P+ VTYNIMI CKEG + A L M++ L P
Sbjct: 792 INRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMP 841
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 166/394 (42%), Gaps = 91/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
P+ +NSLI GL ++ EA ++ P+ T+ + +
Sbjct: 487 APDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADK 546
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+ + + E GVI P+ V CT +I+ CK G M++QG+ D T V+ +
Sbjct: 547 YVKEMLECGVI--PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K+GK+ +A + M + + P+ +Y TL+DGF+ G +
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V YN+L+ G+C+ +E A L EM +G +A TY T+
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFD 724
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF----------SAIGNH---------K 250
M + + PDS VYTT +DG + V A+ +F SA N K
Sbjct: 725 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGK 784
Query: 251 CVLTIETCNCLIDG-------------------LCKIGRLKIAWDIFHMLMQNPGLTPDV 291
LT + N L+DG LCK G L+ A ++FH MQ L P V
Sbjct: 785 TELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHH-MQKANLMPTV 843
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TY +++G+ K G+ + + ++ G+EP+
Sbjct: 844 ITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPD 877
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 65/351 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M +AS F ++ + T N++ +N L+ G C G I +A L +++ PN +T
Sbjct: 646 MQKASSIF---DEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVT 702
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------- 104
+ T+ A LF+EM + G++ PD T ++DG C+ +
Sbjct: 703 YCTIIDGYCKSGDLAEAFQLFDEMKLK-GLV--PDSFVYTTLVDGCCRLNDVERAITIFE 759
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
++G N + + + K GK E L MI R LMDG ++
Sbjct: 760 TNEKGCASSSAPFNALINWVFKFGKTE----LTTDMINR-----------LMDG-SFDKF 803
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------- 215
G +DV +YNI+I+ CK+ N+E A L M + TY +L +
Sbjct: 804 GKPNDV-TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEM 862
Query: 216 -----------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG-----NHKCVLTIETCN 259
+ PD+ +Y+ I+ K G +A+ + + + C L+I TC
Sbjct: 863 FSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCR 922
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L+ G K+G +++A + +++ + PD T +I+ C + A
Sbjct: 923 ALLSGFAKVGEMEVAEKVVENMVRLKYI-PDSSTVIELINESCISSNQRMA 972
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 120/307 (39%), Gaps = 70/307 (22%)
Query: 85 PDVVTCTNIIDGLCK----DGF------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P + C +++D L K D F M+++ + DV + ++ +DG ++ A
Sbjct: 187 PSLARCNHLLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAK-- 244
Query: 135 LEVMIQRDVNPNTCTYN---TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+V+++ + T T N L + KG SYN+LI+G CK + +EDA SL
Sbjct: 245 -DVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLL 303
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY---------- 223
EM S G+ AD Y+ L M + D +Y
Sbjct: 304 VEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKE 363
Query: 224 -------------------------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ I+G ++ V + ++ I V++ T
Sbjct: 364 GAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTY 423
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ G+C G L A++I M G P+VV Y +I F ++ + A +L +M
Sbjct: 424 GTAVKGMCSSGDLDGAYNIVKE-MGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMR 482
Query: 319 ETGLEPN 325
E G+ P+
Sbjct: 483 EQGIAPD 489
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKC--VLTIETCNCLIDGLCKIGRLKIAWDIFH 279
++ IDG + GF+ EA+ VFS+ + V ++ CN L+D L K RL + WD++
Sbjct: 154 LFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYK 213
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+++ + DV +Y ++I C++G Q A +LL EE
Sbjct: 214 GMVER-NVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEE 252
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 155/350 (44%), Gaps = 51/350 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
+F +IKG C G ++ RL L F PNV+ + TL ++A NLF +M
Sbjct: 160 SFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKM 219
Query: 76 VNEFGVICKP---DVVTCTNIIDGLCKDGFMMDQGMR-----PDVVTLNVMTDNLSKDGK 127
N G++ P V+ GL ++GF M + M+ P+ N + DG
Sbjct: 220 -NRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGM 278
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
+++A + M ++ + TYN L+ G K G ++ +YNI
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV----------------- 216
LING+C R ++ AV L ++ S G+ TYNTL + V
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 217 -PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P YT ID + +A ++ S + V + T + L+ GLC G +K A
Sbjct: 399 IAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEAS 458
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L + L P+ V YN MIHG+CKEG +A LL +M ++G+ PN
Sbjct: 459 KLFKSLGEM-HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPN 507
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 36/222 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+PN+VT+N LI G C ++ A RLF +L P ++T+NTL AL
Sbjct: 329 LSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMT 119
+L +EM P VT T +ID + M G+ PDV T +V+
Sbjct: 389 DLVKEMEER---CIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------------- 166
L G M+EA+ L + + + + PN+ YNT++ G+ R
Sbjct: 446 HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMV 505
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+V S+ I C+D ++A L +M++ G++ + Y
Sbjct: 506 PNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYK 547
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
QG++ +++ + ++L G + +A L+ +I + P++ F C
Sbjct: 32 QGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISGRI-PSSLMLQLTQAHFT----PCS 86
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
Y+ ++N Y + + A++ M+ EG + T+N L +
Sbjct: 87 TYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWI 146
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ V D++ + I G + G+ ++ ++ + + + LIDG CK
Sbjct: 147 FNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKD 206
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +A ++F M GL P+ TY+++++GF K+G ++ + +M+ +G+ PN
Sbjct: 207 GNVMLAKNLF-CKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPN 262
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 39/145 (26%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
S P++ T++ L+ GLC G + EA++LFK L PN + +NT+
Sbjct: 432 SGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTM------------ 479
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
I G CK+G M+ GM P+V + L +D
Sbjct: 480 -----------------IHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDE 522
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYN 151
K +EA LL MI + P+ Y
Sbjct: 523 KWKEAELLLGQMINSGLKPSVSLYK 547
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 13/199 (6%)
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
EA L++ M++ +NT +G +H +S + ++N + A
Sbjct: 5 HEALILIQKMVKVPPTKALLLFNTAT------YQGLQHTSHSISFILNHLLSSGMLPQAQ 58
Query: 189 SLCREMLSEGIRADATTYNTL--FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
SL ++S I + T F + P +Y T ++ + +A+ +
Sbjct: 59 SLILRLISGRIPSSLMLQLTQAHFTPCSTYTP---LYDTVVNAYVHSHSTDQALTFLHHM 115
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ V T N L+ L + AW IF+ L L D ++ IMI G C+ G
Sbjct: 116 IHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVL--DAYSFGIMIKGCCEAGY 173
Query: 307 HQKANGLLLDMEETGLEPN 325
K LL +EE GL PN
Sbjct: 174 FVKGFRLLAMLEEFGLSPN 192
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/370 (27%), Positives = 174/370 (47%), Gaps = 60/370 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--- 65
L ++++ F P++VT++S++ GLC +GR+ EA L +++ DPN + + TL
Sbjct: 259 ALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318
Query: 66 LVALNLFEEMVNEFGVICKP---DVVTCTNIIDGLCK--------DGF--MMDQGMRPDV 112
A + +E + ++ + D+V CT ++DGL K D F + + P+
Sbjct: 319 FKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNS 378
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD----- 167
+T + D K G ME LL+ M ++ +NPN TY+++++G+ KG +
Sbjct: 379 ITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYT--KKGILDEAINVM 436
Query: 168 -----------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
Y Y ILI+GYCK E A L EM G++ + ++ L +NN+
Sbjct: 437 KKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVL---VNNL 493
Query: 217 PPDS--------------------HV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
HV YT+ +DG +K G A+ + + +
Sbjct: 494 KRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDV 553
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N LI+GL + G+ + A ++ +++ GL P+ TYNIMI +CK+G+ A L
Sbjct: 554 VTYNVLINGLLEHGKYE-AKSVYSGMIE-MGLAPNQATYNIMIKAYCKQGELDNALELWN 611
Query: 316 DMEETGLEPN 325
+M+ + P+
Sbjct: 612 EMKSHKIMPS 621
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 162/382 (42%), Gaps = 73/382 (19%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+L S PN+ T N L+ C G ++ A L + ++V + + +T+NT+
Sbjct: 35 EMLCSAVPPNVYTHNVLVHAWCKMGNLILALDLLRNVDV---EVDTVTYNTVIWGFCQHG 91
Query: 71 LFEEMVNEFGVICKPDV----VTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLN 116
L + ++ K D +TC ++ G C+ G +MD G DV+ N
Sbjct: 92 LVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFN 151
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------AWWS 161
+ D K G+M A L+E M + + + +YNTL++GF S
Sbjct: 152 TLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISES 211
Query: 162 KGCRHDVY--------------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
+G + V+ +Y +I+ YCK +E+A +L EM+ G
Sbjct: 212 RGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLP 271
Query: 202 DATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D TY+++ M V P+ YTT ID L+K G EA
Sbjct: 272 DVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQ 331
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
S + L + C L+DGL K + K A D+F L + L P+ +TY +I G+CK
Sbjct: 332 SQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSK-LNLIPNSITYTALIDGYCK 390
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G ++ LL +MEE + PN
Sbjct: 391 VGDMERVESLLQEMEEKHINPN 412
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 158/386 (40%), Gaps = 68/386 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S ++ + ++VT+N LI GL G+ EA ++ + PN T+
Sbjct: 532 GKESAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGK-YEAKSVYSGMIEMGLAPNQATY 590
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + AL L+ EM + P +TC ++ GL + G
Sbjct: 591 NIMIKAYCKQGELDNALELWNEMKSH---KIMPSSITCNTLVVGLSEAGEIEKAMNVLNE 647
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M G+ P++V V+ + SK GK + E ++ + N YN L+ F
Sbjct: 648 MSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRM 707
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +YN LI GYC+ +V+ A++ +ML+EG+ + TYN
Sbjct: 708 TKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNL 767
Query: 209 ----------------LF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
LF M N + PD+ Y T I G K G E+++++ +
Sbjct: 768 LLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQG 827
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH--- 307
V T N LI K+G++ A ++ + MQ G+ P TY+I+I G+C +H
Sbjct: 828 FVPKTSTYNVLISDFAKVGKMDQARELLNE-MQVRGVPPSSSTYDILICGWCNLSKHPDL 886
Query: 308 ---------QKANGLLLDMEETGLEP 324
A L+ +M + G P
Sbjct: 887 DRTLKKIYRTDAKNLITEMNDKGFVP 912
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 165/391 (42%), Gaps = 70/391 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G A G ++ ++ +++ FN+LI G C G + A L +++ ++++
Sbjct: 125 IGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVS 184
Query: 61 FNTLA---------LVALNLFEEMVNEFGVI------------------CKPDVVTCTNI 93
+NTL A +L E+ GV + D++T T I
Sbjct: 185 YNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTI 244
Query: 94 IDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I CK M+ G PDVVT + + + L KDG++ EA LL M + V
Sbjct: 245 ISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGV 304
Query: 144 NPNTCTYNTLMD-----GFAWWSKGCRH---------DVYSYNILINGYCKDRNVEDAVS 189
+PN Y TL+D G AW + C+ D+ L++G K ++A
Sbjct: 305 DPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAED 364
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
+ R + + ++ TY L M ++ P+ Y++ I+G
Sbjct: 365 MFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYT 424
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G + EA+ V + + + LIDG CK G+ +IA D+++ M+ GL +
Sbjct: 425 KKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNE-MKLSGLKVNN 483
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
V ++++++ + + +A LL D+ GL
Sbjct: 484 VLFDVLVNNLKRGKRMDEAEELLKDVTSRGL 514
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 89/390 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN +T+ +LI G C G + L +++ +PNVIT++++ A+N+
Sbjct: 376 PNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINV 435
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
++M+++ + P+ +IDG CK G M G++ + V +V+ +N
Sbjct: 436 MKKMLDQNII---PNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNN 492
Query: 122 LSKDGKMEEANCLL-----------------------------------EVMIQRDVNPN 146
L + +M+EA LL E M ++ + +
Sbjct: 493 LKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFD 552
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYS-------------YNILINGYCKDRNVEDAVSLCRE 193
TYN L++G K VYS YNI+I YCK +++A+ L E
Sbjct: 553 VVTYNVLINGLLEHGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNE 612
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
M S I + T NTL M++ + P+ ++ ++ K+G
Sbjct: 613 MKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGK 672
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+++ + + + E N LI C++ K A + ++++ G D VTYN
Sbjct: 673 ANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRD-GFVADTVTYN 731
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G+C+ +KA M G+ PN
Sbjct: 732 ALIRGYCESSHVKKALATYTQMLNEGVSPN 761
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 65/309 (21%)
Query: 61 FNTLALVAL--NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMRPD 111
FN LV+ +++ EM+ P+V T ++ CK G + + + D
Sbjct: 20 FNAFGLVSQVCDIYTEMLCS---AVPPNVYTHNVLVHAWCKMGNLILALDLLRNVDVEVD 76
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWW------ 160
VT N + + G + +A L +M+++D +T T N L+ GF A +
Sbjct: 77 TVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMD 136
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S G DV +N LI+GYCK + A+ L M EG+ +D +YNTL
Sbjct: 137 NLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTL-------- 188
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV-----------------LTIE---- 256
I+G K G +A + I + V L +E
Sbjct: 189 ---------INGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLI 239
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T +I CK L+ A ++ ++ N G PDVVTY+ +++G CK+G+ +A LL +
Sbjct: 240 TYTTIISTYCKQHGLEEARALYEEMIIN-GFLPDVVTYSSIVNGLCKDGRLSEAQELLRE 298
Query: 317 MEETGLEPN 325
M++ G++PN
Sbjct: 299 MKKMGVDPN 307
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 131/329 (39%), Gaps = 78/329 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +T N+L+ GL G I +A + +++V PN++ L A L +
Sbjct: 620 PSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQM 679
Query: 72 FEEMV------------NEFGVICK--------------------PDVVTCTNIIDGLCK 99
E++V N V C+ D VT +I G C+
Sbjct: 680 HEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCE 739
Query: 100 DGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+++G+ P++VT N++ L G M E + L + M + +NP+ T
Sbjct: 740 SSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDAST 799
Query: 150 YNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y+TL+ G+ ++G +YN+LI+ + K ++ A L EM
Sbjct: 800 YDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQ 859
Query: 196 SEGIRADATTYNTLFMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
G+ ++TY+ L N+ PD +D K + +A + + + + V
Sbjct: 860 VRGVPPSSSTYDILICGWCNLSKHPD-------LDRTLKKIYRTDAKNLITEMNDKGFVP 912
Query: 254 TIETCNCLIDGLCKIGRL----KIAWDIF 278
T C+ + G++ K+ +IF
Sbjct: 913 CKSTIACISSTFARPGKMLDAEKLLKEIF 941
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 146/320 (45%), Gaps = 57/320 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
P++VTF +L+ GLC EGR+L+A L ++ P N L + ALNL +M
Sbjct: 8 PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKM 67
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
K VV IID LCKDG M D+G+ PDV+T + M D+ +
Sbjct: 68 EETH---IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRS 124
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G+ +A LL MI+R +NP DV +++ LIN K+ V
Sbjct: 125 GRWTDAEQLLRDMIERQINP---------------------DVVTFSALINALVKEGKVS 163
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A + +ML GI TYN++ IDG K + +A ++ +
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSM-----------------IDGFCKQDRLNDAKRMLDS 206
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + C + T + LI+G CK R+ +IF M G+ + VTY +IHGFC+ G
Sbjct: 207 MASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF-CEMHRRGIVANTVTYTTLIHGFCQVG 265
Query: 306 QHQKANGLLLDMEETGLEPN 325
A LL M +G+ PN
Sbjct: 266 DLDAAQDLLNVMISSGVAPN 285
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 149/344 (43%), Gaps = 106/344 (30%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG LL ++ + ++V +N++I LC +G + A
Sbjct: 54 MGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQ----------------- 96
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
NLF EM ++ G+ PDV+T + +ID C+ G M+++ + P
Sbjct: 97 ---------NLFTEM-HDKGIF--PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINP 144
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
DVVT + + + L K+GK+ EA + M++R + P T TYN+++DGF
Sbjct: 145 DVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRML 204
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ SK C DV +++ LINGYCK + V++ + + EM GI A+ TY TL
Sbjct: 205 DSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTL------- 257
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G C++G L A D
Sbjct: 258 ---------------------------------------------IHGFCQVGDLDAAQD 272
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+ ++++ + G+ P+ +T+ M+ C + + +KA +L D++++
Sbjct: 273 LLNVMI-SSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKS 315
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 44/241 (18%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++ G RPDVVT + + L +G++ +A L++ M++ P
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----------------- 43
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
Y +ING CK + E A++L +M I+A YN +
Sbjct: 44 --------YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHA 95
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + PD Y+ ID ++G +A ++ + + + T + LI+
Sbjct: 96 QNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINA 155
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L K G++ A +I+ +++ G+ P +TYN MI GFCK+ + A +L M P
Sbjct: 156 LVKEGKVSEAEEIYGDMLRR-GIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSP 214
Query: 325 N 325
+
Sbjct: 215 D 215
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 165/392 (42%), Gaps = 88/392 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S ++ P +V++ SLI G C +G++ EA RL+ ++ PN T
Sbjct: 449 LGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYT 508
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
F TL + AL M + F + + M++Q M P+ VT NVM +
Sbjct: 509 FTTL-ISALFRANRMTDAFRLFDE------------------MLEQNMMPNEVTYNVMIE 549
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY----------- 169
K+G +A LL M+Q+ + P+T TY L+ + C +
Sbjct: 550 GHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKL 609
Query: 170 ---SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
Y+ L++GYCK+ + DA+ +CREM+ G+ D Y L
Sbjct: 610 NEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLL 669
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + PD +YT+ IDG K G V +A ++ + + C I T LI+ LCK
Sbjct: 670 KNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKA 729
Query: 269 G---RLKIAWDIFHMLMQNP--------------------------------GLTPDVVT 293
G + ++ W ML+ N GL + V+
Sbjct: 730 GLMDKAELLWK--EMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVS 787
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YNI++ GFCK G+ ++A LL +M + + P+
Sbjct: 788 YNILVRGFCKLGRVEEATKLLDEMIDNAIFPD 819
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 56/338 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
N+V +N LI GLC R+ EA + L + +T+ TL L V +
Sbjct: 260 NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVM 319
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNL 122
+EM+ E G + P +++++GL + G ++D G P + N + ++L
Sbjct: 320 DEMI-ELGFV--PTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSL 376
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
KDGK +EA L + M ++ + N TY+ L+D F K G + V
Sbjct: 377 CKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITV 436
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y YN LING+CK N+ AVS EM+ +G++ P YT+ I
Sbjct: 437 YPYNSLINGHCKLGNLSAAVSFFDEMIDKGLK-----------------PTVVSYTSLIS 479
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGL 287
G G + EA +++ + T LI L + R+ A+ +F ML QN +
Sbjct: 480 GYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQN--M 537
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ VTYN+MI G CKEG KA LL M + GL P+
Sbjct: 538 MPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPD 575
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 155/360 (43%), Gaps = 61/360 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL +++ P+ T+ LI LC+ GR+ EA + L+ N + +
Sbjct: 555 GNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCY 614
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GF--- 102
+ L AL + EMV GV D+V +IDG K+ G
Sbjct: 615 SALLHGYCKEGRLRDALGVCREMVKR-GV--DMDLVCYAVLIDGTIKEQDTSAVFGLLKN 671
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M DQ +RPD V M D SK G +++A + ++MI PN TY TL++
Sbjct: 672 MHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGL 731
Query: 163 GCRHDVYSYNILING-------YC-------KDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ ++ +L++ YC ++ ++E AV L +ML +G+ A+ +YN
Sbjct: 732 MDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNI 790
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + G K G V EA K+ + ++ T + +I C+
Sbjct: 791 L-----------------VRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRR 833
Query: 269 GRLKIA---WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A WD M N GL PD + YN +I+G C G+ KA L DM G++PN
Sbjct: 834 GNLDGAIEFWDT----MLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPN 889
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 35/237 (14%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
S F LL + P+ V + S+I G G + +A ++ + C PN++T+ TL
Sbjct: 663 SAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTL 722
Query: 65 -------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ 106
L+ A L++EM+ P+ VT +D L ++G M M +
Sbjct: 723 INELCKAGLMDKAELLWKEMLVSNST---PNHVTYCCFLDHLAREGSMEKAVQLHNDMLK 779
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------MDG- 156
G+ + V+ N++ K G++EEA LL+ MI + P+ TY+T+ +DG
Sbjct: 780 GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGA 839
Query: 157 FAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+W +KG + D +YN LI G C + A L +M+ G++ + T+ +L
Sbjct: 840 IEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 66/274 (24%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WW 160
+++ + ++ +M ++ + +M Q ++ P T +++G A
Sbjct: 161 FDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEIL 220
Query: 161 SKGCRHDVY---------------------------------SYNILINGYCKDRNVEDA 187
S G R D+Y YN+LI+G CK++ V +A
Sbjct: 221 SMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEA 280
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVP------------------PDSHVYTTYIDG 229
V + ++ +G+ A TY TL + + V P ++ ++G
Sbjct: 281 VEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEG 340
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + G V++A + + + + ++ N LI+ LCK G+ A +F M GL
Sbjct: 341 LRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKE-MGEKGLCA 399
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ VTY+I+I FC+ G+ A L M G++
Sbjct: 400 NDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIK 433
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
+L +L+S TPN VT+ + L EG + +A +L + + N +++N L
Sbjct: 737 LLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM-LKGLLANTVSYNILVRGF 795
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
A L +EM++ PD +T + II C+ G M+++G++
Sbjct: 796 CKLGRVEEATKLLDEMIDN---AIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLK 852
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PD + N + G++ +A L + MI+R V PN T+ +L G + H V
Sbjct: 853 PDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASRKFSISTHPVM 912
Query: 170 SYN 172
N
Sbjct: 913 PEN 915
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 2/167 (1%)
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
F K H S+ ILI+ A SL + +L G + L
Sbjct: 94 FLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKC 153
Query: 217 PPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
S + + I + + +++ +F + + + + T +++GL KI R+ +
Sbjct: 154 DFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVL 213
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+F ++ + G+ PD+ Y +I FC+ KA ++ ME + L
Sbjct: 214 VLFGEIL-SMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDL 259
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 159/346 (45%), Gaps = 35/346 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L G++ P +N++I G + G+ A +L +L C P+V++F
Sbjct: 301 GRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSF 360
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N++ AL LFE M + +P+ T IID LC G
Sbjct: 361 NSILTCLGKKRKVDEALTLFEAMKKD----AEPNSSTYNIIIDMLCMAGKVEEAYMIRDE 416
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+ P+++T+N+M D L K K E A + E QR NPN+ TY +L+DG K
Sbjct: 417 MEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLG--KK 474
Query: 163 GCRHDVYSY--NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV--PP 218
G D Y N+L G+ + N SL R G + D + +F +N P
Sbjct: 475 GNVDDAYRLFENMLDTGH--NANPVVYTSLIRNFFMHGRKEDG---HKIFKEMNRRGCQP 529
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + TY+D ++K G V + +F I + + + + + LI GL K G+ + IF
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
H + Q G D YN ++ GFCK G+ KA +L +M+ + P
Sbjct: 590 HAMKQQ-GFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPP 634
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L +L + N V + SLI+ GR + ++FK++N C P++
Sbjct: 475 GNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLL 534
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NT +FE+ + +G + PDV + + +I GL K G
Sbjct: 535 NTYMDCVFKAGDVEKGRAIFED-IKGYGFL--PDVRSYSILIHGLTKAGQARETSSIFHA 591
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M QG D N + D K GK+++A +LE M + V P TY +++DG A
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR 651
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG +V Y+ LI+G+ K +++A + EM+ +G+ + T+N+
Sbjct: 652 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 711
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F ++ KC T + LI+GLC++
Sbjct: 712 L-----------------MDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRV 754
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+VVTY MI G K G A L + G P+
Sbjct: 755 QKYNKAF-VFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPD 810
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 147/353 (41%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
PN T+N +I LC G++ EA + ++ PN++T N + L FE
Sbjct: 389 PNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEM 448
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F C P+ VT ++IDGL K G M+D G + V + N
Sbjct: 449 FETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFM 508
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWSK----GCRHDVYS 170
G+ E+ + + + M +R P+ NT MD G A + G DV S
Sbjct: 509 HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRS 568
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ILI+G K + S+ M +G DA YN + M
Sbjct: 569 YSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMK 628
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ VPP Y + IDGL K + EA +F + L + + LIDG K+GR+
Sbjct: 629 VKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRID 688
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ I +M+ GLTP+V T+N ++ K + +A M+E PN
Sbjct: 689 EAYLILEEMMKK-GLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPN 740
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 48/297 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDP---NVITFNTLALVALNLFE 73
F P++ +++ LI GL G+ E + +F K F D N + L+
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAY 621
Query: 74 EMVNEFGVI-CKPDVVTCTNIIDGLCK-----DGFMM-----DQGMRPDVVTLNVMTDNL 122
E++ E V P V T +IIDGL K + +M+ +G+ +V+ + + D
Sbjct: 622 EVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGF 681
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K G+++EA +LE M+++ + PN T+N+LMD + C +
Sbjct: 682 GKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT 741
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------ 216
Y+Y+ILING C+ + A +EM +G+ + TY T+ + V
Sbjct: 742 YTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFER 801
Query: 217 ------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD+ + I+G+ +EA VF C + ++ C L+D L K
Sbjct: 802 FKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNK 858
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 132/315 (41%), Gaps = 54/315 (17%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKP 85
F +L++ L EGR+ A L ++ C +P+++ +N V ++ F + N
Sbjct: 220 FTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYN----VCIDCFGKAGN-------- 267
Query: 86 DVVTCTNIIDGLCKDGF-MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
+D K + QG++PD V+ M L K G++ EA L M
Sbjct: 268 --------VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319
Query: 145 PNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
P YNT++ G+ +GC V S+N ++ K R V++A++L
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTL 379
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
E ++ DA P+S Y ID L G V EA + + +
Sbjct: 380 F-----EAMKKDAE-------------PNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAG 421
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T N ++D LCK + + A+++F Q G P+ VTY +I G K+G A
Sbjct: 422 LFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQR-GCNPNSVTYCSLIDGLGKKGNVDDA 480
Query: 311 NGLLLDMEETGLEPN 325
L +M +TG N
Sbjct: 481 YRLFENMLDTGHNAN 495
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 53/212 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +++L ++ TPN+ T+NSL+ L I EA F+ + C PN T
Sbjct: 684 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYT 743
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
++ L I+GLC+ F M QG+ P
Sbjct: 744 YSIL-----------------------------INGLCRVQKYNKAFVFWQEMQKQGLVP 774
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
+VVT M L+K G + +A L E P+ ++N L++G + +
Sbjct: 775 NVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVF 834
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAV 188
KGCR +V + L++ K +E A
Sbjct: 835 EETRLKGCRINVKACISLLDALNKAECLEQAA 866
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 155/346 (44%), Gaps = 48/346 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R+ PN+ TFN +I LC EG + EA LF ++ C P+V+TFN+L
Sbjct: 175 LVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234
Query: 65 ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L+ E++V E CK DVVT +I+ CK G M +G+ +VV
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVV 294
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T + D K+G + EA L M R + N TY L+DG
Sbjct: 295 TFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM 354
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+G +V +Y +L++G CK+R V +A + R M G+RA+
Sbjct: 355 VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL--------------- 399
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+YTT I G + N +A+ + S + N L I LI GLC + +L A +
Sbjct: 400 --LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M GL P+ + Y M+ K G+ +A +L + ++G +PN
Sbjct: 458 K-MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 139/356 (39%), Gaps = 89/356 (25%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNLF 72
++VT+N+LI C GR+ A F + NV+TF+T L A+ LF
Sbjct: 257 DVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLF 316
Query: 73 EEM------VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
+M +NEF C +IDG CK G M+ QG+ +VVT
Sbjct: 317 AQMRVRGMALNEFTYTC---------LIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYT 367
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
V+ D L K+ K+ EA +L +M + V N Y TL+ G +K
Sbjct: 368 VLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNK 427
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---INNVPP- 218
G D+ Y LI G C +++A SL +M G+ + Y T+ A VP
Sbjct: 428 GLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487
Query: 219 ------------------------------------DSHVYTTYIDGLYKNGFVLEAMKV 242
D VYT +DG K G + +A +
Sbjct: 488 IAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFAL 547
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+ + + L + C I G C + + A ++F ++ + G+ PD YN +I
Sbjct: 548 KAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGH-GIAPDRAVYNCLI 602
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 40/290 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VLL ++ N+VT+ L+ GLC E ++ EA + + + N + +
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
TL + AL L EM N+ G+ + D+ +I GLC +
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNK-GL--ELDISLYGALIQGLCNVHKLDEAKSLLTK 458
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-AWWS 161
MD+ G+ P+ + M D K GK+ EA +L+ ++ PN N + F
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVH 518
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
KG D Y L++GY K N+ DA +L +M+ G++ D LF
Sbjct: 519 KGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD------LF----------- 561
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
YT +I G + EA +VFS + H NCLI + +I L
Sbjct: 562 CYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLITQIPEIREL 611
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 173/392 (44%), Gaps = 89/392 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F + R+ + P ++TFNSL+ GLC + EA R+ +++ V+ P+ T
Sbjct: 265 VGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFT 324
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+ TL ++ L EE V + I TC+ +++ LCK+G M
Sbjct: 325 YTTLFDGHLKCGNVDASITLSEEAVRKGVQILD---YTCSILLNALCKEGNMEKAEEVLK 381
Query: 107 ----------------------------------------GMRPDVVTLNVMTDNLSKDG 126
G+RP+ VT N + +
Sbjct: 382 KFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMK 441
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYN 172
MEEA ++ M+++ V PN TYNTL+DG+ KG + +V SY
Sbjct: 442 NMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYG 501
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
LIN CKD N+ +A + +M+ G V P++ +Y IDG
Sbjct: 502 CLINCLCKDANILEAEVILGDMVHRG-----------------VVPNAQIYNMLIDGSCI 544
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G + +A + F + + V T+ T N LI+GLCK G++ A ++ + + GL+ DV+
Sbjct: 545 AGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRK-GLSFDVI 603
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
TYN +I G+ G QKA L M+++G++P
Sbjct: 604 TYNSLISGYSSAGNVQKALELYETMKKSGIKP 635
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 154/339 (45%), Gaps = 53/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
PN VT+NSL+K C + EA + KK+ PNV T+NTL ++
Sbjct: 423 LRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTL-----------IDG 471
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+G C D C I++ + K +G++P+V++ + + L KD + EA +L M
Sbjct: 472 YGRSCLFD--RCFQILEEMEK------KGLKPNVISYGCLINCLCKDANILEAEVILGDM 523
Query: 139 IQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDVY----SYNILINGYCKDRNV 184
+ R V PN YN L+DG F ++ + ++ +YNILING CK V
Sbjct: 524 VHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKV 583
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+A +L E+ +G+ D TYN+L M + + P + Y
Sbjct: 584 MEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRL 643
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I G K G VL K++ + V N LI + G ++ A + H M+ G
Sbjct: 644 IAGCGKEGLVL-VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSL-HSAMEAQG 701
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD +TYN +I G KEG+ K L+ DM+ GL P
Sbjct: 702 IQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPK 740
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 152/338 (44%), Gaps = 51/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRIL-EAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
TP F+ ++ +C+E +++ E+A L+ + P+V + N +LV+ +E+ +
Sbjct: 108 TPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTL 167
Query: 77 NEFGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
F I +PD I K G M G+ P V NV+ L
Sbjct: 168 QLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGL 227
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
K+ +M++A L + M+ R V PN TYNTL+DG+ + +
Sbjct: 228 CKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
++N L+NG C+ + +E+A + EM G D TY TLF D
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLF-----------------D 330
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIE-TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G K G V +A S K V ++ TC+ L++ LCK G ++ A ++ ++N GL
Sbjct: 331 GHLKCGNV-DASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLEN-GL 388
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P V +N +++G+C+ G KA + ME GL PN
Sbjct: 389 APVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPN 426
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 158/378 (41%), Gaps = 86/378 (22%)
Query: 2 GRASGGFVLLGRI-----LMSCF-----TPNMVTFNSLIKGLCTEGRILEAARLFKKLNV 51
G+A V LG + LM+C +P + +N +I GLC E R+ +A +LF ++
Sbjct: 186 GKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLD 245
Query: 52 FCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
PN IT+NTL IDG CK G + +
Sbjct: 246 RRVAPNRITYNTL-----------------------------IDGYCKVGQLEEAFNIRE 276
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+ + P ++T N + + L + MEEA +LE M P+ TY TL DG
Sbjct: 277 RMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCG 336
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + Y+ +IL+N CK+ N+E A + ++ L G+ +N
Sbjct: 337 NVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFN 396
Query: 208 TLFMAINNVPPDSHVYTTYID----GLYKNGFVLEAM-KVFSAIGN----HKCVLT---- 254
T+ V + YTT GL N ++ K F + N KC+
Sbjct: 397 TIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEK 456
Query: 255 -----IETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ET N LIDG GR + F +L M+ GL P+V++Y +I+ CK+
Sbjct: 457 GVLPNVETYNTLIDGY---GRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANI 513
Query: 308 QKANGLLLDMEETGLEPN 325
+A +L DM G+ PN
Sbjct: 514 LEAEVILGDMVHRGVVPN 531
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 39/248 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F ++ P +VT+N LI GLC +G+++EA L ++ +VIT+
Sbjct: 546 GKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITY 605
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------M 103
N+L AL L+E M + G+ KP + T +I G K+G M
Sbjct: 606 NSLISGYSSAGNVQKALELYETM-KKSGI--KPTLNTYHRLIAGCGKEGLVLVEKIYQEM 662
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ + PD V N + + G +++A L M + + P+ TYN L+ G + +G
Sbjct: 663 LQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILG--HFKEG 720
Query: 164 CRHDVY----------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
H V +Y+ILI G+CK ++ + A REM G + +
Sbjct: 721 RMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSVSICD 780
Query: 208 TLFMAINN 215
L +
Sbjct: 781 NLITGLRE 788
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 163/374 (43%), Gaps = 70/374 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L+ ++ F P+ T++ +I LC ++ +A LF+++ + P+V T
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325
Query: 61 FNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF- 102
+ L L+ A LFEEM + V C P VVT T +I K D F
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRS---VGCSPTVVTYTALIHAYLKAKQVPQANDIFH 382
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI----------------QRDVNP 145
M+D G RP+ VT + D L K G + +A + +I + + P
Sbjct: 383 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 442
Query: 146 NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
N TY L+DG A S GC + Y+ LI+G+CK ++ A +
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M G P H YT+ ID ++K+G + AMKV S + C
Sbjct: 503 LQMTKCGYL-----------------PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 545
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T +IDGLC+IG + A + LM+ G +P+VVTY +I G K G+ +
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLS-LMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604
Query: 312 GLLLDMEETGLEPN 325
L M G PN
Sbjct: 605 DLFTQMSRKGCSPN 618
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 153/390 (39%), Gaps = 75/390 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + M TP++ T+ LI C G I +A LF+++ C P V+T+
Sbjct: 303 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L L ++F MV+ C+P+ VT ++DGLCK G +
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVD---AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419
Query: 106 ------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ P+VVT + D L K K++ A+ LL+ M+ PN
Sbjct: 420 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH 479
Query: 148 CTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF K G V++Y LI+ KD ++ A+ + +
Sbjct: 480 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 539
Query: 194 MLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
ML + + TY + M P+ YT IDGL K G
Sbjct: 540 MLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGK 599
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT-Y 294
+ ++ +F+ + C T LI+ LC G L A + + Q P + Y
Sbjct: 600 IDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQT--YWPKYLQGY 657
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
I GF K + G+L +ME G P
Sbjct: 658 RCAIQGFSK--SFIASLGILEEMESYGTVP 685
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 138/338 (40%), Gaps = 50/338 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
PN+VT+ +L+ GLC ++ A L + C+PN I ++ L +
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
F + K P V T T++ID + KDG M+ P+VVT M D L
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWS-KGCRHDV 168
+ G+ E+A LL +M ++ +PN TY L+DG F S KGC +
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y +LIN C ++ A L EM TY P Y I
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEM--------KQTY---------WPKYLQGYRCAIQ 662
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GL 287
G K+ + ++ + + ++ V LID K GRL+IA ++ +M+ P +
Sbjct: 663 GFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y +I C Q ++A L +M G P
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 157/386 (40%), Gaps = 71/386 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + PN+VT+ +L+ G + ++ R+ + C+PN FN+L
Sbjct: 129 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC 188
Query: 66 -----LVALNLFEEMV-----------NEF-GVICKPDVVTCTNIIDGLCK-DGFMMDQG 107
A L M N F G IC + + +++D K G M+
Sbjct: 189 NEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAAN 248
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ V + L GK ++A L++ M+++ P+T TY+ ++ +K
Sbjct: 249 CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 308
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---F 210
G DVY+Y ILI+ +CK +E A L EM S G TY L +
Sbjct: 309 LLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAY 368
Query: 211 MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI--------- 246
+ VP P+ Y +DGL K G + +A +V++ +
Sbjct: 369 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 428
Query: 247 -------GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
H + T L+DGLCK ++ A ++ ++ + G P+ + Y+ +I
Sbjct: 429 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALID 487
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ A + L M + G P+
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCGYLPS 513
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 148/385 (38%), Gaps = 101/385 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALV-------AL 69
+ P+ VT+N+L++ L + G++ R+ K+++ FC D + AL AL
Sbjct: 36 YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVM 118
++ E +F K D V CT++I GL + + D+ M P+VVT +
Sbjct: 96 DMIER--EDF----KLDTVLCTHMISGLMEASY-FDEAMSFLHRMRCNSCIPNVVTYRTL 148
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------FAWWSK--------GC 164
K ++ ++ +M+ NPN +N+L+ +A+ K GC
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208
Query: 165 RHDVYSYNILINGYCKDRNV---------------------------------------- 184
YNI I C +
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268
Query: 185 -EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
+ A L +EM+ +G D +TY+ + M + V PD + YT
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
ID K G + +A +F + + C T+ T LI K ++ A DIFH M +
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR-MVDA 387
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKA 310
G P+ VTY ++ G CK G KA
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKA 412
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 33/230 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + LL + +PN+VT+ +LI GL G+I + LF +++ C PN +T
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621
Query: 61 FNTL--ALVALNLFEE---MVNEFGVICKPDVVTCTN-IIDGLCKDGF--------MMDQ 106
+ L L A L ++ ++ E P + I G K M
Sbjct: 622 YRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY 681
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G P ++ D SK G++E A L + M++ V + T N +
Sbjct: 682 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME--VPSSVKTDNDM------------- 726
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
Y LI C VE+A L EM G + + + L + V
Sbjct: 727 ----YASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEV 772
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 157/338 (46%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P +VT+N+++ LC GR+ +A R + P+++++NTL AL L
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLL 369
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F E+ ++ V P VVT +IDG C+ G M+ G+ PDVVT ++
Sbjct: 370 FSELRSKNLV---PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRG 426
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
+ G + A L + M+ R + P+ Y T + G ++G D
Sbjct: 427 FCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPD 486
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN+LING CK N +DA L ++M EGI D TY ++ ++ I
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSI------------IHAHLI 534
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + +A +VFS + ++ T LI GRL A F MQ+ G+
Sbjct: 535 SGLLR-----KAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDE-MQDKGV 588
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P+V+TYN +I+G CKE A L +ME G+ PN
Sbjct: 589 SPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPN 626
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 166/361 (45%), Gaps = 50/361 (13%)
Query: 14 ILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+++ C P +VTFN+++ C EG + A + + +F CDPN +++N L L
Sbjct: 197 VMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKG 256
Query: 71 LFE---EMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
F+ E++ + ++ K T +I G CK M+ +G P VVT N
Sbjct: 257 EFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYN 316
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSK 162
+ +L + G++ +A L+VM+ D+ P+ +YNTL+ G++ SK
Sbjct: 317 TIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSK 376
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP-- 217
V +YN LI+G C+ N++ A + +M+ G+ D T+ L F + N+P
Sbjct: 377 NLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMA 436
Query: 218 -------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
PD YTT I G K G +A + + + T N LI+G
Sbjct: 437 KELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLING 496
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK+G A ++ M+ G+ PD VTY +IH G +KA + DM + G+ P
Sbjct: 497 LCKLGNFDDANELVQK-MRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHP 555
Query: 325 N 325
+
Sbjct: 556 S 556
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 138/333 (41%), Gaps = 79/333 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ N ++K L + + E ++ + P ++TFNT+
Sbjct: 170 PDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTM---------------- 213
Query: 81 VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+D CK+G M G P+ V+ NV+ + LS G+ +
Sbjct: 214 -------------MDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDR 260
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A L+E M + + TYN L I G+CK E+A L
Sbjct: 261 AKELIEQMSMLGLKVSAHTYNPL---------------------IRGFCKKEMFEEANDL 299
Query: 191 CREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYK 232
REML G TYNT+ ++ ++ PD Y T I G +
Sbjct: 300 RREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSR 359
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G EA+ +FS + + V ++ T N LIDG C+ G L IA + ++++ GL PDVV
Sbjct: 360 LGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKH-GLCPDVV 418
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T+ I++ GFC+ G A L +M GL+P+
Sbjct: 419 TFTILVRGFCQMGNLPMAKELFDEMLSRGLKPD 451
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F + + F P+++T+N LI GLC G +A L +K+ + P+ +T
Sbjct: 465 LGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVT 524
Query: 61 FNTLALVAL--NLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MM 104
+ ++ L L + F + K P VVT T +I G M
Sbjct: 525 YTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQ 584
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
D+G+ P+V+T N + L K+ M+ A L M + V+PN
Sbjct: 585 DKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNK----------------- 627
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
Y+Y ILIN + +DA+ L ++ML I+ D+ T++ L
Sbjct: 628 ----YTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSAL 668
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
+L P++VT+ LI GR+ A + F ++ PNVIT+N L
Sbjct: 548 MLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENM 607
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIID------------GLCKDGFMMDQGMRPDV 112
VA NLF EM ++ GV P+ T T +I+ L KD M+D+ ++PD
Sbjct: 608 MDVAYNLFAEMESK-GV--SPNKYTYTILINENSNLQYWQDALKLYKD--MLDREIKPDS 662
Query: 113 VTLNVMTDNLSKDGKM 128
T + + +LSKD K+
Sbjct: 663 CTHSALMKHLSKDYKL 678
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 170/375 (45%), Gaps = 89/375 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F+P++ N I LC + R+ +A ++ +K+ P+V+T+ T+ A+
Sbjct: 256 FSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAV 315
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------------------------- 101
L+EEMV + G+ KPDVV C +I GLCK+
Sbjct: 316 GLWEEMV-KMGL--KPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALI 372
Query: 102 -----------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
FM G P VVT N++ ++ G ME+A L+ M VN
Sbjct: 373 SGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVN 432
Query: 145 PNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSL 190
P+ +YN L+ G FA+ S G D+ S NILI+ +CK + V+ A+ L
Sbjct: 433 PDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALEL 492
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+EM +G++ADA TY TL I+GL+ G+ A ++F + +
Sbjct: 493 FKEMDYKGMQADAVTYGTL-----------------INGLFSVGYYNLAEELFEQMLKAQ 535
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ N ++ LCK+G LK A IF ++Q + PD+VTYN +I+ K + +A
Sbjct: 536 IDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKE-ILPDIVTYNTLIYWLGKNSRAMEA 594
Query: 311 NGLLLDMEETGLEPN 325
L DM G+EP+
Sbjct: 595 LDLFKDMRTKGVEPD 609
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 40/223 (17%)
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
MD+ G PD+ N+ D L K ++ +A ++E M + P+ TY T++
Sbjct: 251 MDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVV-------- 302
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC C ++ +AV L EM+ G++ D L
Sbjct: 303 GC-------------LCNNKRFSEAVGLWEEMVKMGLKPDVVACGAL------------- 336
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I GL KN V EA ++ S + + L++ N LI G + G + A+ I M
Sbjct: 337 ----IFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIIS-FM 391
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G P VVTYNI+++ +C G +KA L+ ME +G+ P+
Sbjct: 392 RTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPD 434
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 129/315 (40%), Gaps = 54/315 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ F L R+L ++ +N+LI G G I +A + + C+P V+T+
Sbjct: 344 SKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTY 403
Query: 62 N-------TLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
N T+ ++ A NL +M GV PD + ++ GLCK +
Sbjct: 404 NILLNHYCTIGMMEKAENLITKMETS-GV--NPDRYSYNQLLKGLCKTHQLDKAFAFVSD 460
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWS 161
M+ G D+V+ N++ D K K++ A L + M + + + TY TL++G F+
Sbjct: 461 HMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGY 520
Query: 162 KGCRHDVYS-------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+++ YNI+++ CK +++ A + M+ + I D TYNT
Sbjct: 521 YNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNT 580
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V PDS + I+GL G A +V+ + +
Sbjct: 581 LIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENG 640
Query: 251 CVLTIETCNCLIDGL 265
+L E LI L
Sbjct: 641 IILDREVSERLISVL 655
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 153/340 (45%), Gaps = 54/340 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
AS V+L ++ P+ +TF++LI GLC EGR+ EA RL ++ + +PN+ ++ +
Sbjct: 380 ASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTS 439
Query: 64 L---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
L +VA NL EM+ PDVVT +I GL G M
Sbjct: 440 LIHGFCVRGEVIVASNLLVEMMERGHT---PDVVTFGALIHGLVVAGQVSEALLVREKMA 496
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+ + PD NV+ L K + A L+E M++++V+P+ Y TL+DGF
Sbjct: 497 ARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLD 556
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG DV YN +I GYC+ + +AV M G
Sbjct: 557 EARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVG------------ 604
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YTT I G K G + A+ + + +C + + LI+G CK+G
Sbjct: 605 -----RIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGD 659
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A +F M++ GL P+V+TY I+I K+ + +A
Sbjct: 660 TDAAECLFGS-MESQGLFPNVITYTILIGSLFKKDKVVRA 698
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 153/365 (41%), Gaps = 70/365 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +LLG + P +VT+ +L+ L +G + + A L ++ PNV +
Sbjct: 308 GDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIY 367
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
N++ A AL + ++M F C PD +T + +I GLC
Sbjct: 368 NSVIDALCKCRSASQALVVLKQM---FAGGCDPDAITFSTLISGLC-------------- 410
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
++G+++EA LL + ++NPN +Y +L+ GF
Sbjct: 411 -----------QEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVE 459
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----- 213
+G DV ++ LI+G V +A+ + +M + + DA YN L +
Sbjct: 460 MMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKM 519
Query: 214 -------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
NV PD +VYTT IDG +N + EA K+F + + N
Sbjct: 520 LPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNA 579
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+I G C+ G + A + M+ G PD TY +I G+ K+G A LL DM +
Sbjct: 580 MIKGYCQFGMMNEAVECMST-MRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKR 638
Query: 321 GLEPN 325
+PN
Sbjct: 639 RCQPN 643
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 156/374 (41%), Gaps = 76/374 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ TP++VTF +LI GL G++ EA + +K+ P+ +N L
Sbjct: 456 LLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLC 515
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A NL EEM+ + PD T +IDG ++ FM +G+ P
Sbjct: 516 KKKMLPAARNLIEEMLEQN---VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHP 572
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
DVV N M + G M EA + M + P+ TY TL+ G+A
Sbjct: 573 DVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLL 632
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
+ C+ +V +Y+ LINGYCK + + A L M S+G+ + TY L
Sbjct: 633 CDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKK 692
Query: 210 -----------FMAINNVPPDSHVYTTYIDGL------------------YKNGFVLEAM 240
+M +N P+ + + + GL + G +L+
Sbjct: 693 DKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLD-- 750
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+F A+ N +C N +I LC L A D+ + M N G PD T+ +++G
Sbjct: 751 -IFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNK-MANKGYKPDSATFLSLLYG 808
Query: 301 FCKEGQHQKANGLL 314
FC G+ ++ +L
Sbjct: 809 FCSVGKSREWRTIL 822
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 134/340 (39%), Gaps = 74/340 (21%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVV 88
+++GLC EG + + +L + C PN + +N L
Sbjct: 265 MVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVL------------------------ 300
Query: 89 TCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
IDG C+ G M +G+ P VVT + L + G +E+ LL M
Sbjct: 301 -----IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEM 355
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+R + PN YN+++D ++ GC D +++ LI+G C++ V
Sbjct: 356 RERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRV 415
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A L RE + + ++Y +L M PD +
Sbjct: 416 QEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGAL 475
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNP 285
I GL G V EA+ V + + + N LI GLCK L A ++ ML QN
Sbjct: 476 IHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQN- 534
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD Y +I GF + +A + ME+ G+ P+
Sbjct: 535 -VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPD 573
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 39/204 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G L G + PN++T+ LI L + +++ AA F+ + + C PN T
Sbjct: 657 LGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYT 716
Query: 61 FNTLAL------------------------VALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
++L L++F +VN+ C P II
Sbjct: 717 LHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDR---CDPRNSAYNAIIFS 773
Query: 97 LCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
LC M ++G +PD T + GK E +L QRD
Sbjct: 774 LCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEV 833
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYS 170
Y L D + S GC +VYS
Sbjct: 834 ASRYKILFDQYVVKSVGC--EVYS 855
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 165/358 (46%), Gaps = 60/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S L + P++VT+ S+I G+C G+++EA +F ++ V +P+ +T
Sbjct: 360 LGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVT 419
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A ++ +MV + G+ P+VVT T + DGLCK+G
Sbjct: 420 YTALIDGYCKAGEMKEAFSVHNQMVQK-GLT--PNVVTYTALADGLCKNGEIDVANELLH 476
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G++P+V T N + + L K G +E+ L+E M P+T TY TLMD +
Sbjct: 477 EMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMG 536
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+K + + ++N+L+NG+C +ED L ML +GI +ATT+N
Sbjct: 537 EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFN 596
Query: 208 TLFMAI---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+L NN+ + +Y ++ G + ++ T N LI G
Sbjct: 597 SLMKQYCIKNNMRATTEIY----KAMHDRGVMPDS----------------NTYNILIKG 636
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
CK +K AW H M G + TY+ +I GF K + +A L +M + GL
Sbjct: 637 HCKARNMKEAW-FLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGL 693
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 135/295 (45%), Gaps = 53/295 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + +++ TPN+VT+ +L GLC G I A L +++ PNV T+
Sbjct: 431 GEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTY 490
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NT+ + L EEM + G PD +T T ++D CK G
Sbjct: 491 NTIVNGLCKIGNIEQTVKLMEEM-DLAGFY--PDTITYTTLMDAYCKMGEMAKAHELLRI 547
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+++ ++P +VT NV+ + G +E+ L+E M+++ + PN T+N+LM +
Sbjct: 548 MLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNN 607
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A +G D +YNILI G+CK RN+++A L +EM+ +G A TY+
Sbjct: 608 MRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDA 667
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
L I G YK +EA K+F + H V + + +D
Sbjct: 668 L-----------------IRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 61/324 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +N++I LC G ++EA +L + + + P+ + + T+ A L
Sbjct: 310 PDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKL 369
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
F+EM + V PD+VT T++I G+CK G M++ +G+ PD VT + D
Sbjct: 370 FDEMRRKKIV---PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K G+M+EA + M+Q+ + P +V +Y L +G CK+
Sbjct: 427 YCKAGEMKEAFSVHNQMVQKGLTP---------------------NVVTYTALADGLCKN 465
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
++ A L EM +G++ + TYNT+ ++GL K G + + +K
Sbjct: 466 GEIDVANELLHEMSRKGLQPNVYTYNTI-----------------VNGLCKIGNIEQTVK 508
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + T L+D CK+G + A ++ +++ N L P +VT+N++++GF
Sbjct: 509 LMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIML-NKRLQPTLVTFNVLMNGF 567
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C G + L+ M E G+ PN
Sbjct: 568 CMSGMLEDGERLIEWMLEKGIMPN 591
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 162/364 (44%), Gaps = 70/364 (19%)
Query: 5 SGGFVLLGRILMSCFT---PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
S F L +L+ + + + F+ + L G +LEA +LF KL + +V +
Sbjct: 150 SKSFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSC 209
Query: 62 NTL----------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N +A+ +FEE E GV + V+C ++ LC+ G
Sbjct: 210 NLFLSRLSCNFEGIKIAVKVFEEF-PELGVCW--NTVSCNIVLHCLCQLGKVREAHNLLV 266
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN---------- 151
M D+G PDVV+ V+ + G++++ L++ + + + P+ YN
Sbjct: 267 QMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNG 326
Query: 152 ------TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
L+ G W G D Y +I+G+CK NV A L EM + I D T
Sbjct: 327 EVVEAEQLLRGMRKW--GVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVT 384
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCL 261
YT+ I G+ K+G ++EA ++F N V +E T L
Sbjct: 385 -----------------YTSVIHGICKSGKMVEAREMF----NEMLVKGLEPDEVTYTAL 423
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDG CK G +K A+ + + ++Q GLTP+VVTY + G CK G+ AN LL +M G
Sbjct: 424 IDGYCKAGEMKEAFSVHNQMVQK-GLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482
Query: 322 LEPN 325
L+PN
Sbjct: 483 LQPN 486
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG + LL +L P +VTFN L+ G C G + + RL + + PN T
Sbjct: 535 MGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATT 594
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
FN+L + ++ + K ++ T I M D+G+ PD T N++
Sbjct: 595 FNSL-----------MKQYCI--KNNMRATTEIYKA------MHDRGVMPDSNTYNILIK 635
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC----------RHDVYS 170
K M+EA L + M+++ + TY+ L+ GF K +H + +
Sbjct: 636 GHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVA 695
Query: 171 ----YNILINGYCKDRNVEDAVSLCREMLSE 197
Y+I ++ ++ N E + LC E ++E
Sbjct: 696 EKDIYDIFVDVNYEEGNWEITLELCDEFMTE 726
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/373 (27%), Positives = 172/373 (46%), Gaps = 61/373 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L ++ S P++VT ++L+ GLC +G+ EA LF++++ PN +T+ TL
Sbjct: 276 AFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLID 335
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+L L EMV+ GV+ D+V T ++D L K+G
Sbjct: 336 SLAKARRGSESLGLLGEMVSR-GVVM--DLVMYTALMDRLGKEGKIEEAKDVLRHAQSDN 392
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------- 158
+ P+ VT V+ D + G ++ A +L M ++ V PN T++++++G
Sbjct: 393 ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAA 452
Query: 159 -----WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G +V +Y LI+G+ K + E A+ + R+ML EG+ A+ ++L +
Sbjct: 453 DYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSL---V 509
Query: 214 NNVPPDSHV---------------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
N + + ++ YTT +DGL+K G + A KV +
Sbjct: 510 NGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLS 569
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
N I+ LC +G+ A F M+N GL PD TYN MI C+EG+ KA
Sbjct: 570 PDAVVYNVFINCLCTLGKFSEAKS-FLKEMRNTGLEPDQATYNTMIAARCREGKTSKALK 628
Query: 313 LLLDMEETGLEPN 325
LL +M+ ++PN
Sbjct: 629 LLKEMKRNSIKPN 641
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 160/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A ++ R+ PN+VT+ +LI C + EA L++ + P+V+T
Sbjct: 236 GDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTL 295
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+ L A LF EM ++ GV P+ VT +ID L K G
Sbjct: 296 SALVDGLCRDGQFSEAYALFREM-DKIGV--APNHVTYCTLIDSLAKARRGSESLGLLGE 352
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ +G+ D+V + D L K+GK+EEA +L ++ PN TY L+D
Sbjct: 353 MVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGN 412
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
K +V +++ +ING K + A R+M GI + TY T
Sbjct: 413 IDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGT 472
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V ++ V + ++GL KNG + A +F +
Sbjct: 473 LIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERG 532
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+L L+DGL K G + A+ + LM+ L+PD V YN+ I+ C G+ +A
Sbjct: 533 LLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEK-NLSPDAVVYNVFINCLCTLGKFSEA 591
Query: 311 NGLLLDMEETGLEPN 325
L +M TGLEP+
Sbjct: 592 KSFLKEMRNTGLEPD 606
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 155/337 (45%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++V +N+LI G C + A + +++ +V+ +N+L A AL +
Sbjct: 186 DVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVV 245
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNL 122
E M + GV +P+VVT T +I CK + F M+ G+ PDVVTL+ + D L
Sbjct: 246 ERMKAD-GV--EPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGL 302
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDV 168
+DG+ EA L M + V PN TY TL+D A S+G D+
Sbjct: 303 CRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDL 362
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y L++ K+ +E+A + R S+ I + TY L D+H ID
Sbjct: 363 VMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLV--------DAHCRAGNID 414
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + VL M+ S I N + T + +I+GL K G L A D + M++ G+
Sbjct: 415 GAEQ---VLLQMEEKSVIPN------VVTFSSIINGLVKRGCLGKAAD-YMRKMKDSGIA 464
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY +I GF K + A + DM G+E N
Sbjct: 465 PNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEAN 501
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 143/346 (41%), Gaps = 70/346 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN+VTF+S+I GL G + +AA +K+ PNV+T+ TL AL++
Sbjct: 430 PNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDV 489
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+ +M++E G+ + F++D + + L K+G +E A
Sbjct: 490 YRDMLHE-----------------GVEANNFVVDS-----------LVNGLRKNGNIEGA 521
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
L + M +R + + Y TLMDG K D YN+ IN
Sbjct: 522 EALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINC 581
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
C +A S +EM + G+ D TYNT+ M N++ P+
Sbjct: 582 LCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPN 641
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
YTT + GL + G V +A + + + + T T ++ R + +I H
Sbjct: 642 LITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEI-H 700
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LM GL D+ YN ++H C G + A +L +M G+ P+
Sbjct: 701 ELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPD 746
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 154/359 (42%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S L + + P+ T+N++I C EG+ +A +L K++ PN+IT
Sbjct: 585 LGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLIT 644
Query: 61 FNTL--ALVALNLFEE---MVNEFGVIC-KPDVVTCTNIIDG----------LCKDGFMM 104
+ TL L+ + ++ ++NE P +T ++ L MM
Sbjct: 645 YTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMM 704
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ D+ N + L G A +L+ M+ R + P+T T+N
Sbjct: 705 GAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNA------------ 752
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------- 215
LI G+CK ++++A ++ +ML +G+ + T+NTL + +
Sbjct: 753 ---------LILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADT 803
Query: 216 ---------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ P++ Y + G K +EA++++ + + + T N L+
Sbjct: 804 VLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFA 863
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A ++F M+ G+ TY+I+++G+ K + LL DM+E G +P+
Sbjct: 864 KAGMMNQAKELFSE-MKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPS 921
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 136/337 (40%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
N +SL+ GL G I A LFK ++ + + + TL A +
Sbjct: 501 NNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVG 560
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+E++ + PD V I+ LC G M + G+ PD T N M
Sbjct: 561 QELMEKN---LSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAAR 617
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
++GK +A LL+ M + + PN TY TL+ G S G
Sbjct: 618 CREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTS 677
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
++ ++ R + + + M+ G+ AD T YNTL V+
Sbjct: 678 LTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTL------------VHVLCCH 725
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G+ +N V V + T N LI G CK L A+ I+ ++ GL+
Sbjct: 726 GMARNATV-----VLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQ-GLS 779
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++ T+N ++ G G+ +A+ +L DM++ GLEPN
Sbjct: 780 PNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPN 816
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 140/367 (38%), Gaps = 96/367 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT- 60
G+ S LL + + PN++T+ +L+ GL G + +A L ++ P +T
Sbjct: 621 GKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTH 680
Query: 61 ----------------------------------FNTLALV---------ALNLFEEMVN 77
+NTL V A + +EM+
Sbjct: 681 QRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLT 740
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
G+ PD +T +I G CK M+ QG+ P++ T N + L G+
Sbjct: 741 R-GI--APDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGR 797
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ EA+ +L M + + PN T Y+IL+ GY K N +A
Sbjct: 798 IGEADTVLSDMKKVGLEPNNLT---------------------YDILVTGYAKKSNKVEA 836
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+ L EM+S+G A+TYN+L + K G + +A ++FS +
Sbjct: 837 LRLYCEMVSKGFIPKASTYNSL-----------------MSDFAKAGMMNQAKELFSEMK 879
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ T T + L++G K+ R I I M+ G P T + M F + G
Sbjct: 880 RRGVLHTSSTYDILLNGWSKL-RNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMT 938
Query: 308 QKANGLL 314
+A LL
Sbjct: 939 GEARRLL 945
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++VT+ LI G C G + A +L + +PN + ++ + AL +
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTV 351
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
E+MV+ ++ D T ++ G C G M +G+ D VT + +
Sbjct: 352 VEDMVHHKVIL---DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLING 408
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L + G+++EA +L+ M+ R ++ + TY L+DG+ K G +
Sbjct: 409 LCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPN 468
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y L +G CK +V+ A L EM ++G+ +A TYN+L I
Sbjct: 469 VVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL-----------------I 511
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+GL K G++ +AM+ + + + T LID LCK G L A D+ ++ N G+
Sbjct: 512 NGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDN-GI 570
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P +VTYN++++GFC G+ + LL M E + PN
Sbjct: 571 KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPN 608
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 155/366 (42%), Gaps = 66/366 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL R+ +P+ N+++ L + EA LF+ L D NV ++N L V
Sbjct: 222 LLRRVRQYGISPSPEACNAVLSRLPLD----EAIELFQGLP----DKNVCSYNILLKVLC 273
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A LF+EM + PDVVT +I G C G M+ +G+ P
Sbjct: 274 GAGRVEDARQLFDEMAS------PPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEP 327
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW 160
+ + L G++ +A ++E M+ V + Y T++ GF W+
Sbjct: 328 NATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWF 387
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KG D +Y LING C+ +++A + +EML+ + D TY L
Sbjct: 388 DEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKR 447
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V P+ YT DGL K G V A ++ + N L T
Sbjct: 448 GKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTY 507
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+GLCK G L A M GL PDV TY +I CK G+ +A+ LL +M
Sbjct: 508 NSLINGLCKAGYLDQAMRTM-ADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEML 566
Query: 319 ETGLEP 324
+ G++P
Sbjct: 567 DNGIKP 572
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 31/267 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + F + ++ PN+VT+ +L GLC +G + A L +++ + N T+
Sbjct: 448 GKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTY 507
Query: 62 NTL------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
N+L A M + KPDV T T +ID LCK G M+D
Sbjct: 508 NSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD 567
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G++P +VT NV+ + G++E LLE M++++++PN TYN+LM +
Sbjct: 568 NGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKS 627
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
S+ + +YNILI G+CK R++++A EM+ +G R A++Y+ L
Sbjct: 628 TTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIR 687
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLE 238
+N + D + K GF E
Sbjct: 688 LLNKKKKFVEARKLFHD-MRKEGFTAE 713
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 48/329 (14%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77
F+ + +F+ L+ LC L +A L +++ + P+ N A+++ +E +
Sbjct: 202 AFSSDPASFDLLL--LC-----LPSAPLLRRVRQYGISPSPEACN--AVLSRLPLDEAIE 252
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQ-------GMRPDVVTLNVMTDNLSKDGKMEE 130
F + +V + ++ LC G + D PDVVT ++ G++E
Sbjct: 253 LFQGLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMASPPDVVTYGILIHGYCALGELEN 312
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYSYNILIN 176
A LL+ M+ R V PN Y +++ D H D Y +++
Sbjct: 313 AVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLS 372
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G+C ++ A EM +G+ D TY TL I+GL + G +
Sbjct: 373 GFCNKGDLVSARRWFDEMQRKGLATDGVTYTTL-----------------INGLCRAGEL 415
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA KV + + + T L+DG CK G++ A+ + + ++Q G+ P+VVTY
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQR-GVAPNVVTYTA 474
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G CK+G Q AN LL +M GLE N
Sbjct: 475 LSDGLCKQGDVQAANELLHEMSNKGLELN 503
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 158/349 (45%), Gaps = 51/349 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+ G++ F P+ + +N++I GL G EA ++ + C P +T+ L +L
Sbjct: 247 VFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLC 306
Query: 68 ALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVV 113
E F V+ +P+ V T++I G K G M ++ G RPDV+
Sbjct: 307 KAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVI 366
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T VM D L K G E+A E M++ PN TY T++ G + +
Sbjct: 367 THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM 426
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
GC D +Y L++G+CK +++A L E+ D + + P+
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL-------DKCSSS----------PN 469
Query: 220 SHVYTTYIDGLYKNGFVLEAM-KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+Y++ ++GL G V + + +F L C +I GLCK GRL A IF
Sbjct: 470 LQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIF 529
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFC--KEGQHQKANGLLLDMEETGLEPN 325
M + G PD TYNI+I+G C +E + ++A LL D+E+ G P+
Sbjct: 530 QR-MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPD 577
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 155/359 (43%), Gaps = 52/359 (14%)
Query: 1 MGRASGGF-VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
+GR + F ++ G I CF P+ VT+ L+ G C GR+ EAA+L +L+ PN+
Sbjct: 413 IGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471
Query: 60 TFNTL--ALVALNLFEEMVNEFGVICKPDVVT-----CTNIIDGLCKDGF---------- 102
+++L L E+ +++ K T C +II GLCK G
Sbjct: 472 LYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQR 531
Query: 103 MMDQGMRPDVVTLNVMTDNL--SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+ +G +PD T N++ + L S++ ++E A LL + + P+ TY L G
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKI 591
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+G DV +Y L G C V+ AVSL +EM+ +G
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG-------- 643
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PD+ Y I+GL K + +A K F + T+ T L+ LC
Sbjct: 644 ---------GAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALC 694
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A+ F ++ L V+ Y+ +IHGFCK + A L DM G P
Sbjct: 695 HAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPT 753
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 152/356 (42%), Gaps = 50/356 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F ++ T+N L+ L E + + +++ PN +FN L + ++ V
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAV 174
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDN 121
F ++ CKPD+ T ++D LCK G MM G + PD M
Sbjct: 175 TCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRT 234
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K +++EA + M + P+ YNT++DG A +K C
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y IL+N CK +E A L R M + G R ++ Y +L
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M PD +T IDGL K+G +A K F + C + T +I GL KIG
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A+ I ++ + G PD VTY ++ GFCK G+ +A LL ++++ PN
Sbjct: 415 RVANAFRIMKGMIAH-GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 152/344 (44%), Gaps = 55/344 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE 74
S F PN V + SLI G GR+ EA LF ++ P+VIT + L FE+
Sbjct: 324 SGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQ 383
Query: 75 MVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
F + CKP+VVT T II GL K G M+ G PD VT + D
Sbjct: 384 AAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLD 443
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRHDVYSYN------ 172
K G+++EA LL+ + + +PN Y++L++G + D++ +
Sbjct: 444 GFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAET 503
Query: 173 -------ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV--PPDSHVY 223
+I G CK +++A + + M+SEG + DATTYN L IN + ++ V
Sbjct: 504 LDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNIL---INGLCRSRENRVE 560
Query: 224 TTY--IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ + L K G++ +A+ T L GLCKIG + A +
Sbjct: 561 RAFALLHDLEKVGYLPDAV----------------TYTPLCIGLCKIGEVDRAVKMLEE- 603
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G DVV Y + G C +GQ +A L +M G P+
Sbjct: 604 ASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPD 647
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 114/252 (45%), Gaps = 34/252 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
G + DV T N + + L + + + E M++ + PNT ++N L+ FA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173
Query: 159 ------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI----RADATTYNT 208
K C+ D++++ IL++ CK E A + EM++ G RA T
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233
Query: 209 LFMAINNV---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ V PPD+ Y T IDGL K G EA+KV + CV
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVP 293
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T T L++ LCK G L+ A ++F +M G P+ V Y +IHGF K G+ ++A L
Sbjct: 294 TEVTYGILVNSLCKAGTLERAEELFR-VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352
Query: 314 LLDMEETGLEPN 325
+M E G P+
Sbjct: 353 FDEMVEAGYRPD 364
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 106/268 (39%), Gaps = 60/268 (22%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F LL + + P+ VT+ L GLC G + A ++ ++ + + +V+ +
Sbjct: 558 RVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYT 617
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L A++LF+EMV + G PD II+GL K + D
Sbjct: 618 ALCTGLCYQGQVDRAVSLFQEMVRQGGA---PDAAAYCCIINGLIKVKKLEDACKFFDEM 674
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G +P V T + L G ++EA E M+ R +
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGS---------------- 718
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
V Y+ LI+G+CK V+ A+ L +M+S G A T +LF
Sbjct: 719 ----VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQ 774
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKN 233
MA PP + +T +DGL K+
Sbjct: 775 ELLQEMAAGGSPPHAATFTAILDGLRKS 802
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 155/346 (44%), Gaps = 48/346 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R+ PN+ TFN +I LC EG + EA LF ++ C P+V+TFN+L
Sbjct: 175 LVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234
Query: 65 ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L+ E++V E CK DVVT +I+ CK G M +G+ +VV
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVV 294
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T + D K+G + EA L M R + N TY L+DG
Sbjct: 295 TFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM 354
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+G +V +Y +L++G CK+R V +A + R M G+RA+
Sbjct: 355 VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL--------------- 399
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+YTT I G + N +A+ + S + N L I LI GLC + +L A +
Sbjct: 400 --LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M GL P+ + Y M+ K G+ +A +L + ++G +PN
Sbjct: 458 K-MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 154/351 (43%), Gaps = 54/351 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VLL ++ N+VT+ L+ GLC E ++ EA + + + N + +
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
TL + AL L EM N+ G+ + D+ +I GLC +
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNK-GL--ELDISLYGALIQGLCNVHKLDEAKSLLTK 458
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MD+ G+ P+ + M D K GK+ EA +L+ ++ PN TY L+DG
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518
Query: 158 -----AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ ++K G +V +Y L++G CK+ + +AV L EM+ +G+ D
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKV---- 574
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
VYT +DG K G + +A + + + + L + C I G C +
Sbjct: 575 -------------VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNL 621
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ A ++F ++ + G+ PD YN +I + K G ++A L +ME
Sbjct: 622 NMMPEAREVFSEMIGH-GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 161/357 (45%), Gaps = 52/357 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ C P+V+T+ +L
Sbjct: 278 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 337
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+ A LF+EM + + D V T +I GL + G M G
Sbjct: 338 GLGKEKRSFEAYKLFKEMASRGLAL---DTVCYTALIRGLLQTGKIPQASSVYKTMTSHG 394
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------- 156
PDVVTL+ M D LSK G++ A + + M R + PN Y+ L+ G
Sbjct: 395 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 454
Query: 157 --FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA- 212
A K C D +YNILI+G CK +VE A + EML G + D TYN L
Sbjct: 455 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGL 514
Query: 213 ------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
++++ VY++ +DGL K+G + +F + V +T
Sbjct: 515 CKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEM-ERSGVANSQTRTR 573
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LI LCK R+ A +F+ + + G+ P YN +I K G+ + + +M
Sbjct: 574 LIFHLCKANRVDEAVSLFNAI-RKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 628
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 159/368 (43%), Gaps = 57/368 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV-FCCDPNVITFNTL---- 64
LL L + F P++ T+N LI G C EA + +++ F P++ T N +
Sbjct: 141 LLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGL 200
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMR 109
L A++ FE + V T + +I+GL K G M+ G
Sbjct: 201 CKSGKVLAAMDHFEAVRRSMPV----SAATFSILINGLVKAGMMIQAHSLAQETTTNGCT 256
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
D+ T + + L+K+ K++EA L+E + P TYN L++G +
Sbjct: 257 IDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 316
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMA 212
GC DV +Y LI+G K++ +A L +EM S G+ D Y L +
Sbjct: 317 LRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQ 376
Query: 213 INNVPPDSHVY---------------TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+P S VY +T IDGL K G + A+++F ++
Sbjct: 377 TGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVV 436
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ LI GLCK ++ A ++ M+ TPD +TYNI+I G CK G + A +M
Sbjct: 437 YSALIHGLCKARKMDCALEMLAQ-MKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 495
Query: 318 EETGLEPN 325
E G +P+
Sbjct: 496 LEAGCKPD 503
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 54/216 (25%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G +H V++ N L++ + + + +A +L + L+ R D T+N L
Sbjct: 114 GFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEA 173
Query: 210 ---------------------------------------FMAI-NNVPPDSHVYTTYIDG 229
F A+ ++P + ++ I+G
Sbjct: 174 FAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILING 233
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G +++A + + C + I T +++ L K +++ A + + N G TP
Sbjct: 234 LVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITAN-GCTP 292
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYN +++G CK G+ ++A LL + + G P+
Sbjct: 293 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPD 328
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 158/360 (43%), Gaps = 58/360 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +VL + ++ TFN +I LC EG++ +A + PN++T
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVT 258
Query: 61 FNTLALVALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+NT+ V+ + G + D + T M Q + PD T
Sbjct: 259 YNTI-----------VHGYCSSGRVEAADAILTT-----------MKRQKIEPDSFTYGS 296
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + K G++EEA+ + E M+Q+ + P+ YNTL+DGF KG
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKG 356
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ +YN LI+ ++ ++A + +E+ +GI DA TYN L
Sbjct: 357 ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF 416
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + + P YT+ + L K + EA +F I + + + N LIDG
Sbjct: 417 LLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGH 476
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C +K A+++ M + PD VT+N ++ G C+EG+ ++A L +M+ G++P+
Sbjct: 477 CSNSNVKGAFELLKD-MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 36/240 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
++ I +P+ +T+N LI G C +A L ++ P T+ +L V
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGM-----RP 110
A +LF+++ +E GV+ PDV+ +IDG C K F + + M P
Sbjct: 443 KKNRMKEADDLFKKITSE-GVL--PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D VT N + ++GK+EEA L + M +R + P+ ++NTL+ G++
Sbjct: 500 DEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVR 559
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G V +YN L+ G CK++ + A L +EM+S+G+ D TTY TL I V
Sbjct: 560 NEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G F LL + P+ VTFN++++G C EG++ EA LF ++ P+ I+FNTL
Sbjct: 484 GAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLI 543
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLNVMTD 120
G + D+ KD F M+D G P V+T N +
Sbjct: 544 -------------SGYSRRGDI-----------KDAFRVRNEMLDTGFNPTVLTYNALVQ 579
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
L K+ + + A LL+ M+ + + P+ TY TL++G A
Sbjct: 580 GLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 60/342 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++V+++++I G C G + + +L +++ + PN+ T+N++ L+ A
Sbjct: 7 APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
+ EM+N+ G++ PD V T +IDG CK G M Q + PD + +
Sbjct: 67 VLREMINQ-GIV--PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + GKM EA+ + M R V P+ TY TL+DG+ G
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V +Y L +G CK V+ A L EM +G++ + TYN+L
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSL----------------- 226
Query: 227 IDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
++GL K+G + +A+K+ + G + +T T L+D CK G + A ++ ++
Sbjct: 227 VNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT---LMDAYCKTGEMVKAHELLREML- 282
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL P V+T+N++++GFC G + LL M E G+ PN
Sbjct: 283 DRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPN 324
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 162/380 (42%), Gaps = 87/380 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ + M PN+ T+NS+I LC G++ +A R+ +++ P+ + + TL
Sbjct: 32 LIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFC 91
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A LF+EM + V PD + T +I GLC+ G MM+ +G+ P
Sbjct: 92 KLGNIQAAYKLFDEMEKQRIV---PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEP 148
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT + D K G+ME+A L M+Q + PN TY L DG
Sbjct: 149 DEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELL 208
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG + ++ +YN L+NG CK N+ AV L EM G+
Sbjct: 209 HEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMY---------------- 252
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK---- 272
PD+ +TT +D K G +++A ++ + + T+ T N L++G C G L+
Sbjct: 253 -PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGER 311
Query: 273 -IAWDIFHMLMQNP-----------------------------GLTPDVVTYNIMIHGFC 302
+AW + +M N G+ PD TYNI+I G C
Sbjct: 312 LLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHC 371
Query: 303 KEGQHQKANGLLLDMEETGL 322
K ++A L +M E G
Sbjct: 372 KARNMKEAWFLHKEMAEKGF 391
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 138/292 (47%), Gaps = 54/292 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +++ S TPN+VT+ +L GLC G++ A L ++ N+ T+
Sbjct: 164 GEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTY 223
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
N+L A+ L EEM E + PD +T T ++D CK G M
Sbjct: 224 NSLVNGLCKSGNIRQAVKLMEEM--EVAGM-YPDTITFTTLMDAYCKTGEMVKAHELLRE 280
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+D+G++P V+T NV+ + G +E+ LL M+++ + PNT TYN+LM +
Sbjct: 281 MLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNN 340
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D +YNILI G+CK RN+++A L +EM +G A++YN+
Sbjct: 341 MRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNS 400
Query: 209 ----------------LF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
LF M + D+ +Y ++D Y G + A+++
Sbjct: 401 IIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALEL 452
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + L + P+ + + ++I GLC G+++EA ++F K+ +P+ +T
Sbjct: 93 LGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVT 152
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL A +L +MV + G+ P+VVT T + DGLCK G
Sbjct: 153 YTTLIDGYCKSGEMEKAFSLHNQMV-QSGLT--PNVVTYTALADGLCKLGQVDTANELLH 209
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G++ ++ T N + + L K G + +A L+E M + P+T T+ TLMD +
Sbjct: 210 EMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTG 269
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G + V ++N+L+NG+C +ED L ML +GI + TTYN
Sbjct: 270 EMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYN 329
Query: 208 TLFMAI---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+L NN+ + +Y G+ G + ++ T N LI G
Sbjct: 330 SLMKQYCIRNNMRCTTEIY----KGMCARGVMPDS----------------NTYNILIKG 369
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK +K AW H M G +YN +I GF K+ + +A L +M G+
Sbjct: 370 HCKARNMKEAW-FLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAA 428
Query: 325 N 325
+
Sbjct: 429 D 429
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 19/182 (10%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
+G DV SY+ +INGYC ++ + L +EM +G++ + TYN++ + +
Sbjct: 4 RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ PD+ VYTT IDG K G + A K+F + + V +I
Sbjct: 64 AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLC+ G++ A +F+ + G+ PD VTY +I G+CK G+ +KA L M ++GL
Sbjct: 124 GLCRCGKMMEADKVFNKMFSR-GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182
Query: 324 PN 325
PN
Sbjct: 183 PN 184
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 40/238 (16%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G PDVV+ + + + G++++ L++ M + + PN TYN++
Sbjct: 4 RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSI------------ 51
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
IL+ CK V+DA + REM+++GI D Y TL
Sbjct: 52 -------ILL--LCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKL 102
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PD YT I GL + G ++EA KVF+ + + T LIDG CK
Sbjct: 103 FDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCK 162
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A+ + + ++Q+ GLTP+VVTY + G CK GQ AN LL +M GL+ N
Sbjct: 163 SGEMEKAFSLHNQMVQS-GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLN 219
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G PDVV+Y+ +I+G+C G+ QK L+ +M+ GL+PN
Sbjct: 1 MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPN 44
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 161/345 (46%), Gaps = 49/345 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+VT+N++I G C R EA + + + +PN+ITFN + L +E
Sbjct: 16 PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75
Query: 79 FGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ + PD VT +++G CK+G M+ G+ P+VVT + +++ K
Sbjct: 76 LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYS 170
G + A + M R + PN TY T+++GFA G + +
Sbjct: 136 AGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVT 195
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YN LING+C +E+A+ L ++M+ +G+ D +Y+T+ M
Sbjct: 196 YNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMI 255
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+V PD+ Y++ I GL + + EA +F + K T LI+ CK G L
Sbjct: 256 GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLN 315
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
A + ++Q G PD VTYN++I+G K+ + ++A LLL +
Sbjct: 316 KALHLHDEMIQK-GFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 33/354 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G VL ++ + +PN+VT+ SLI +C G + A F +++V PN T+
Sbjct: 102 GNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTY 161
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMD---------- 105
T+ L +E + + P +VT +I+G C G M +
Sbjct: 162 TTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVG 221
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSK 162
+G+ PDVV+ + + +++ +++ A + MI + V P+ TY++L+ G ++
Sbjct: 222 KGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTE 281
Query: 163 GCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
C D ++Y LIN YCK+ ++ A+ L EM+ +G DA TYN L
Sbjct: 282 ACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLIN 341
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+N + Y + + + ++ + + C + ++ L+ G C G +
Sbjct: 342 GLNKQARSKEARRLLLKLFYDDS--IPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLM 399
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F ++ N P+ YN++IHG C+ G KA L +M P+
Sbjct: 400 DEADQVFESMI-NKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPH 452
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 53/279 (18%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMD---QGMRPDVVTLN 116
+ L F+EM C P+VVT +IDG CK GF+ +G+ P+++T N
Sbjct: 1 MGLRFFKEMERNG---CLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFN 57
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + L +DG+++E + +L M ++ P+ TYNT L+N
Sbjct: 58 MIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNT---------------------LVN 96
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYCK+ N A+ L EM+ G+ + TY +L M + + P
Sbjct: 97 GYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCP 156
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ YTT I+G + G + EA +V + + + +I T N LI+G C +GR++ A +
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
M G+ PDVV+Y+ +I GF + + +A + ++M
Sbjct: 217 QD-MVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEM 254
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M N P+ Y T IDG K EA ++G + T N +I+GLC+ GR
Sbjct: 9 MERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGR 68
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LK ++ + M G PD VTYN +++G+CKEG +A L +M GL PN
Sbjct: 69 LKETSEVL-VEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
++ F P+ VT+N LI GL + R EA RL KL P+ +T+NTL
Sbjct: 323 EMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTL-------- 374
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
C + + ++ G C G M +++ +P+ NV+
Sbjct: 375 ------IENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGH 428
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G + +A L + M+ D P+T T L+ A +++G
Sbjct: 429 CRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVK--ALFTEG 467
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M+ G P+VVTYN MI G+CK + +A G L M GLEPN
Sbjct: 5 FFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPN 52
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 157/339 (46%), Gaps = 52/339 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L L PN++ +N+LIKGL +G ILEAA+L +++ P V TF
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTF 429
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N L VN +CK + C + DGL K M+ +G PD+ T N++
Sbjct: 430 NIL-----------VNG---LCK---MGCVSDADGLVK--VMISKGYFPDIFTFNILIHG 470
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
S KME A +L+VM+ V+P+ TYN+L++G S KGC +
Sbjct: 471 YSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPN 530
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++++NIL+ C+ ++ A+ L EM ++ + DA T+ TL I
Sbjct: 531 LFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTL-----------------I 573
Query: 228 DGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
DG KNG + A +F + + + T N +I + + +A +F M +
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQE-MVDRC 632
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD TY +M+ GFCK G LL+M E G P+
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 155/352 (44%), Gaps = 56/352 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++GR++ P++VT+N LI GLC + EA KL +P+ T+
Sbjct: 265 GELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTY 324
Query: 62 NTL----------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
NTL L L + N F PD T ++IDGLC +G
Sbjct: 325 NTLIAGYCKGGMVQLAERILVNAVFNGF----VPDEFTYRSLIDGLCHEGETNRALALFN 380
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+ +G++P+V+ N + LS G + EA L M ++ + P T+N L++G
Sbjct: 381 EALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMG 440
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKG D++++NILI+GY +E+A+ + M+ G+ D TYN
Sbjct: 441 CVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYN 500
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+L ++GL K + M+ + + C + T N L++ LC+
Sbjct: 501 SL-----------------LNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+L A + M+N + PD VT+ +I GFCK G A L MEE
Sbjct: 544 YHKLDKALGLLEE-MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 83/371 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
TP++ +F +K C R A RL ++ C+ NV+ + T+ N +E
Sbjct: 143 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 202
Query: 78 EFG-------------------VICK--------------------PDVVTCTNIIDGLC 98
FG V+CK P++ T I GLC
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLC 262
Query: 99 KD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+ G ++DQG +PDVVT N + L K+ K +EA L ++ + P++
Sbjct: 263 QKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSF 322
Query: 149 TYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYNTL+ G+ G D ++Y LI+G C + A++L E
Sbjct: 323 TYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
L +GI+ + YNTL I GL G +LEA ++ S + +
Sbjct: 383 LGKGIKPNVILYNTL-----------------IKGLSNQGLILEAAQLASEMSEKGLIPE 425
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
++T N L++GLCK+G + A D +M + G PD+ T+NI+IHG+ + + + A +L
Sbjct: 426 VQTFNILVNGLCKMGCVSDA-DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEIL 484
Query: 315 LDMEETGLEPN 325
M + G++P+
Sbjct: 485 DVMMDNGVDPD 495
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 146/327 (44%), Gaps = 63/327 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S L+ ++ + P++ TFN LI G T+ ++ A + + DP+V T
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYT 498
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+N+L L + +E+++ + M+++G P++ T N++
Sbjct: 499 YNSLLNGLCKTSKYEDVMETYKT---------------------MVEKGCAPNLFTFNIL 537
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
++L + K+++A LLE M + VNP+ T+ TL+DGF
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGF--------------------- 576
Query: 179 CKDRNVEDAVSLCREMLSEGIRADAT-TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK+ +++ A +L R+M + + +T TYN + H +T ++ V
Sbjct: 577 CKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIII----------HAFTEKLN-------VT 619
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A K+F + + T ++DG CK G + + + +M+N G P + T +
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMEN-GFIPSLTTLGRV 678
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEP 324
I+ C E + +A G++ M + GL P
Sbjct: 679 INCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 33/237 (13%)
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----GF---------AWWSKGCRH 166
N + GK++EA + E M D P +YN +M G+ +G
Sbjct: 85 NYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITP 144
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
DVYS+ I + +C+ A+ L M S+G + Y T+
Sbjct: 145 DVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELF 204
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + V + + L K G V E K+ + + + T N I GLC+
Sbjct: 205 GKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQK 264
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A + L+ + G PDVVTYN +I+G CK + Q+A L + GLEP+
Sbjct: 265 GELDAAVRMVGRLI-DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPD 320
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VY + + G V EA+ VF + + C T+ + N ++ L G A ++ M
Sbjct: 78 VYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVY-MR 136
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G+TPDV ++ I + FC+ + A LL +M G E N
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMN 180
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 155/346 (44%), Gaps = 48/346 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R+ PN+ TFN +I LC EG + EA LF ++ C P+V+TFN+L
Sbjct: 175 LVRRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYG 234
Query: 65 ALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L+ E++V E CK DVVT +I+ CK G M +G+ +VV
Sbjct: 235 KCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVV 294
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T + D K+G + EA L M R + N TY L+DG
Sbjct: 295 TFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEM 354
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+G +V +Y +L++G CK+R V +A + R M G+RA+
Sbjct: 355 VRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANEL--------------- 399
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+YTT I G + N +A+ + S + N L I LI GLC + +L A +
Sbjct: 400 --LYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLT 457
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M GL P+ + Y M+ K G+ +A +L + ++G +PN
Sbjct: 458 K-MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN 502
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 154/351 (43%), Gaps = 54/351 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VLL ++ N+VT+ L+ GLC E ++ EA + + + N + +
Sbjct: 342 GRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLY 401
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
TL + AL L EM N+ G+ + D+ +I GLC +
Sbjct: 402 TTLIHGHFMNKNSEKALGLLSEMKNK-GL--ELDISLYGALIQGLCNVHKLDEAKSLLTK 458
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MD+ G+ P+ + M D K GK+ EA +L+ ++ PN TY L+DG
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518
Query: 158 -----AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ ++K G +V +Y L++G CK+ + +AV L EM+ +G+ D
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKV---- 574
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
VYT +DG K G + +A + + + + L + C I G C +
Sbjct: 575 -------------VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNL 621
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ A ++F ++ + G+ PD YN +I + K G ++A L +ME
Sbjct: 622 NMMPEAREVFSEMIGH-GIAPDRAVYNCLISKYQKLGNLEEAISLQDEMER 671
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 163/374 (43%), Gaps = 70/374 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L+ ++ F P+ T++ +I LC ++ +A LF+++ + P+V T
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325
Query: 61 FNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF- 102
+ L L+ A LFEEM + V C P VVT T +I K D F
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRS---VGCSPTVVTYTALIHAYLKAKQVPQANDIFH 382
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI----------------QRDVNP 145
M+D G RP+ VT + D L K G + +A + +I + + P
Sbjct: 383 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 442
Query: 146 NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
N TY L+DG A S GC + Y+ LI+G+CK ++ A +
Sbjct: 443 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 502
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M G P H YT+ ID ++K+G + AMKV S + C
Sbjct: 503 LQMTKCGYL-----------------PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 545
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T +IDGLC+IG + A + LM+ G +P+VVTY +I G K G+ +
Sbjct: 546 TPNVVTYTAMIDGLCRIGESEKALKLLS-LMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604
Query: 312 GLLLDMEETGLEPN 325
L M G PN
Sbjct: 605 DLFTQMSRKGCSPN 618
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 153/390 (39%), Gaps = 75/390 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + M TP++ T+ LI C G I +A LF+++ C P V+T+
Sbjct: 303 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 362
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L L ++F MV+ C+P+ VT ++DGLCK G +
Sbjct: 363 ALIHAYLKAKQVPQANDIFHRMVD---AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419
Query: 106 ------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ P+VVT + D L K K++ A+ LL+ M+ PN
Sbjct: 420 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH 479
Query: 148 CTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF K G V++Y LI+ KD ++ A+ + +
Sbjct: 480 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 539
Query: 194 MLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
ML + + TY + M P+ YT IDGL K G
Sbjct: 540 MLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGK 599
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT-Y 294
+ ++ +F+ + C T LI+ LC G L A + + Q P + Y
Sbjct: 600 IDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQT--YWPKYLQGY 657
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
I GF K + G+L +ME G P
Sbjct: 658 RCAIQGFSK--SFIASLGILEEMESYGTVP 685
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 138/338 (40%), Gaps = 50/338 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
PN+VT+ +L+ GLC ++ A L + C+PN I ++ L +
Sbjct: 440 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 499
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
F + K P V T T++ID + KDG M+ P+VVT M D L
Sbjct: 500 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWS-KGCRHDV 168
+ G+ E+A LL +M ++ +PN TY L+DG F S KGC +
Sbjct: 560 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y +LIN C ++ A L EM TY P Y I
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEM--------KQTY---------WPKYLQGYRCAIQ 662
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GL 287
G K+ + ++ + + ++ V LID K GRL+IA ++ +M+ P +
Sbjct: 663 GFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y +I C Q ++A L +M G P
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 157/386 (40%), Gaps = 71/386 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + PN+VT+ +L+ G + ++ R+ + C+PN FN+L
Sbjct: 129 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC 188
Query: 66 -----LVALNLFEEMV-----------NEF-GVICKPDVVTCTNIIDGLCK-DGFMMDQG 107
A L M N F G IC + + +++D K G M+
Sbjct: 189 NEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAAN 248
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ V + L GK ++A L++ M+++ P+T TY+ ++ +K
Sbjct: 249 CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 308
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---F 210
G DVY+Y ILI+ +CK +E A L EM S G TY L +
Sbjct: 309 LLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAY 368
Query: 211 MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI--------- 246
+ VP P+ Y +DGL K G + +A +V++ +
Sbjct: 369 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 428
Query: 247 -------GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
H + T L+DGLCK ++ A ++ ++ + G P+ + Y+ +I
Sbjct: 429 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALID 487
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ A + L M + G P+
Sbjct: 488 GFCKAGKIDSAQEVFLQMTKCGYLPS 513
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 148/385 (38%), Gaps = 101/385 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALV-------AL 69
+ P+ VT+N+L++ L + G++ R+ K+++ FC D + AL AL
Sbjct: 36 YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADAL 95
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVM 118
++ E +F K D V CT++I GL + + D+ M P+VVT +
Sbjct: 96 DMIER--EDF----KLDTVLCTHMISGLMEASY-FDEAMSFLHRMRCNSCIPNVVTYRTL 148
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------FAWWSK--------GC 164
K ++ ++ +M+ NPN +N+L+ +A+ K GC
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 208
Query: 165 RHDVYSYNILINGYCKDRNV---------------------------------------- 184
YNI I C +
Sbjct: 209 PPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGK 268
Query: 185 -EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
+ A L +EM+ +G D +TY+ + M + V PD + YT
Sbjct: 269 FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTI 328
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
ID K G + +A +F + + C T+ T LI K ++ A DIFH M +
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHR-MVDA 387
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKA 310
G P+ VTY ++ G CK G KA
Sbjct: 388 GCRPNDVTYGALVDGLCKAGNISKA 412
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + LL + +PN+VT+ +LI GL G+I + LF +++ C PN +T
Sbjct: 562 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 621
Query: 61 FNTL--ALVALNLFEE---MVNEFGVICKPDVVTCTN-IIDGLCKDGF--------MMDQ 106
+ L L A L ++ ++ E P + I G K M
Sbjct: 622 YRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY 681
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT------------CTYNTLM 154
G P ++ D SK G++E A L + M++ + T C + +
Sbjct: 682 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVE 741
Query: 155 DGFAWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ F +S+ R ++ + LI G + + ++A+ LC + EG+
Sbjct: 742 EAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 790
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 52/348 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
++GR+ S ++ T+N I+GLC R+ EA + L+ +V T+ TL L
Sbjct: 237 VIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLC 296
Query: 67 --VALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPD 111
EEM+N EFG + P +N++DGL K G + G+ P
Sbjct: 297 KVEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
+ N + +++ KDGK++EA L M + + PN TY+ L+D F K
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLG 414
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
G + VY Y+ LI+G+CK + A SL EM++ G++
Sbjct: 415 KMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK----------------- 457
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ +YT+ I G K G + A +++ + T LI GLC R+ A +
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +++ + P+ VTYN++I G CKEG +A LL +M E GL P+
Sbjct: 518 FGEMVE-WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 161/344 (46%), Gaps = 54/344 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++ + PN+V + SLI G C EG + A RL+ ++ PN T
Sbjct: 438 LGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYT 497
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
F L A LF EMV E+ VI P+ VT +I+G CK+G
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMV-EWNVI--PNEVTYNVLIEGHCKEGNTVRAFELLD 554
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+++G+ PD T + L G++ EA E M D+ N +
Sbjct: 555 EMVEKGLVPDTYTYRPLISGLCSTGRVSEAR---EFM--NDLQGEQQKLNEI-------- 601
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+GC +V +Y LING CK ++ A LCREML+ +N P+ +
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLA-----------------SNSLPNQN 644
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y ++D L G + +A+++ + T+ T N LI G CK+GR++ A ++ +
Sbjct: 645 TYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVL-VN 702
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G++PD ++Y+ +I+ +C+ G ++A L M G+ P+
Sbjct: 703 MIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPD 746
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 169/383 (44%), Gaps = 64/383 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L+ ++ P++ +N+LI +C +G++ EA LF + PN +T+
Sbjct: 334 GNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTY 393
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ L VAL+ +M E G+ K V +++I G CK G
Sbjct: 394 SILIDSFCKRGKLDVALHFLGKMT-EVGI--KATVYPYSSLISGHCKLGKLRAAKSLFDE 450
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G++P+VV + K+G++ A L M + ++PNT T+ L+ G ++
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510
Query: 163 GCRHDVY--------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ +YN+LI G+CK+ N A L EM+ +G+ D TY
Sbjct: 511 MAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570
Query: 209 L---------------FM-----------AINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
L FM I P+ YT I+GL K G + +A +
Sbjct: 571 LISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELL 630
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + T C +D L G ++ A + +L++ G + VTYNI+I GFC
Sbjct: 631 CREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE--GFLANTVTYNILIRGFC 688
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K G+ Q+A +L++M ++G+ P+
Sbjct: 689 KLGRIQEAAEVLVNMIDSGISPD 711
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 33/262 (12%)
Query: 94 IDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
+DGL MMD G+ P + TL+ + + L + + A L + ++ + P+ Y +
Sbjct: 162 LDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAV 221
Query: 154 MDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ S GC V +YN+ I G CK++ V +AV + + +G+
Sbjct: 222 VRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGL 281
Query: 200 RADATTYNTLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMK 241
RAD TY TL + + V P + +DGL K G + A
Sbjct: 282 RADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFD 341
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + + ++ N LI+ +CK G+L A +F+ M + GL P+ VTY+I+I F
Sbjct: 342 LVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNN-MGHKGLFPNDVTYSILIDSF 400
Query: 302 CKEGQHQKANGLLLDMEETGLE 323
CK G+ A L M E G++
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIK 422
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL---------NVFCCDPNVITFNTLALVALNL 71
PN+VT+ +LI GLC G + +A L +++ N + C + +T A+ L
Sbjct: 606 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 665
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+ ++ F + VT +I G CK G M+D G+ PD ++ + +
Sbjct: 666 HDVLLEGF----LANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYE 721
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+ G ++EA L E M+ R VNP+T +YN LI G C
Sbjct: 722 YCRRGDLKEAIKLWESMLNRGVNPDTV---------------------AYNFLIYGCCVT 760
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTL 209
+ A L +M+ G++ + TYN+L
Sbjct: 761 GELTKAFELRDDMMRRGVKPNRATYNSL 788
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 52/348 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
++GR+ S ++ T+N I+GLC R+ EA + L+ +V T+ TL L
Sbjct: 237 VIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLC 296
Query: 67 --VALNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPD 111
EEM+N EFG + P +N++DGL K G + G+ P
Sbjct: 297 KVEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPS 354
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
+ N + +++ KDGK++EA L M + + PN TY+ L+D F K
Sbjct: 355 LFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLG 414
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
G + VY Y+ LI+G+CK + A SL EM++ G++
Sbjct: 415 KMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLK----------------- 457
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ +YT+ I G K G + A +++ + T LI GLC R+ A +
Sbjct: 458 PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKL 517
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +++ + P+ VTYN++I G CKEG +A LL +M E GL P+
Sbjct: 518 FGEMVE-WNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/408 (25%), Positives = 172/408 (42%), Gaps = 87/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LG++ + ++SLI G C G++ A LF ++ PNV+ +
Sbjct: 404 GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
+L A L+ EM G P+ T T +I GLC G
Sbjct: 464 TSLISGYCKEGELHNAFRLYHEMT---GKGISPNTYTFTALISGLCHANRMAEANKLFGE 520
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++ + P+ VT NV+ + K+G A LL+ M+++ + P+T TY L+ G +
Sbjct: 521 MVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR 580
Query: 163 GCRHDVYS--------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ ++ L++GYCK+ ++DA+ CREML G+ D Y+
Sbjct: 581 VSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSV 640
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L I + PD+ +YTT ID K G + A ++ + +
Sbjct: 641 LIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEG 700
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDI-FHMLMQNP------------------------ 285
C+ + T LI+GLCKIG + A + ML N
Sbjct: 701 CLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAI 760
Query: 286 --------GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + VTYNI+I GFCK G+ Q+A +L++M ++G+ P+
Sbjct: 761 QLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 808
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/426 (25%), Positives = 170/426 (39%), Gaps = 123/426 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L + +PN TF +LI GLC R+ EA +LF ++ + PN +T+
Sbjct: 474 GELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGL--------------- 97
N L + A L +EMV E G++ PD T +I GL
Sbjct: 534 NVLIEGHCKEGNTVRAFELLDEMV-EKGLV--PDTYTYRPLISGLCSTGRVSEAREFMND 590
Query: 98 --------------------CKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
CK+G M+ +G+ D+V +V+ + +
Sbjct: 591 LQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQD 650
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW----SKGCRHDVYSYNI 173
LL+ M + + P+ Y T++D F W S+GC +V +Y
Sbjct: 651 RRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTA 710
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LING CK ++ A LCREML+ +N P+ + Y ++D L
Sbjct: 711 LINGLCKIGLMDKAELLCREMLA-----------------SNSLPNQNTYACFLDYLTSE 753
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HML----------- 281
G + +A+++ + T+ T N LI G CK+GR++ A ++ +M+
Sbjct: 754 GNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISY 812
Query: 282 ----------------------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
M N G+ PD V YN +I+G C G+ KA L DM
Sbjct: 813 STIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR 872
Query: 320 TGLEPN 325
G++PN
Sbjct: 873 RGVKPN 878
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 33/262 (12%)
Query: 94 IDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
+DGL MMD G+ P + TL+ + + L + + A L + ++ + P+ Y +
Sbjct: 162 LDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAV 221
Query: 154 MDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ S GC V +YN+ I G CK++ V +AV + + +G+
Sbjct: 222 VRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGL 281
Query: 200 RADATTYNTLFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMK 241
RAD TY TL + + V P + +DGL K G + A
Sbjct: 282 RADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFD 341
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + + ++ N LI+ +CK G+L A +F+ M + GL P+ VTY+I+I F
Sbjct: 342 LVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNN-MGHKGLFPNDVTYSILIDSF 400
Query: 302 CKEGQHQKANGLLLDMEETGLE 323
CK G+ A L M E G++
Sbjct: 401 CKRGKLDVALHFLGKMTEVGIK 422
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL---------NVFCCDPNVITFNTLALVALNL 71
PN+VT+ +LI GLC G + +A L +++ N + C + +T A+ L
Sbjct: 703 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 762
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+ ++ F + VT +I G CK G M+D G+ PD ++ + +
Sbjct: 763 HDVLLEGF----LANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYE 818
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+ G ++EA L E M+ R VNP+T +YN LI G C
Sbjct: 819 YCRRGDLKEAIKLWESMLNRGVNPDTV---------------------AYNFLIYGCCVT 857
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTL 209
+ A L +M+ G++ + TYN+L
Sbjct: 858 GELTKAFELRDDMMRRGVKPNRATYNSL 885
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 39/158 (24%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
+ L +L+ F N VT+N LI+G C GRI EAA
Sbjct: 760 IQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAA------------------------- 794
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
E +VN PD ++ + II C+ G M+++G+ PD V N +
Sbjct: 795 ----EVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFL 850
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
G++ +A L + M++R V PN TYN+L+ G
Sbjct: 851 IYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 158/358 (44%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+P++VT+NSLI G G + E A LF ++ C P++IT+N L A
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMT 119
F EM N G+ KP+VVT + +ID CK+G M G+ P+ T +
Sbjct: 321 EYFSEMKNN-GL--KPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
D K G + EA LL M+Q V N TY L+DG + G
Sbjct: 378 DANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGIS 437
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ Y L++GY K +EDA+ + ++M I+ D Y ++
Sbjct: 438 PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLI 497
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + + + TT ID +K G +A+ F + + TI T LIDGLC+
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCE 557
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +++A D F ++ + GL P+V Y +I G C + A L +M+ G+ P+
Sbjct: 558 AGIVELAVDYFCRML-SLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPD 614
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 43/283 (15%)
Query: 85 PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P +C ++ L K G M+ G+ P V T NVM D L K+G +E + L
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCK 180
M + ++P+ TYN+L+DG+ GC D+ +YN LIN YCK
Sbjct: 253 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK 312
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+ A EM + G++ + TY+TL M + P+
Sbjct: 313 FEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFT 372
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT+ ID K G + EA K+ + + L I T L+DGLCK GR+ A ++F ++
Sbjct: 373 YTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSML 432
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G++P+ Y ++HG+ K + + A +L M E ++P+
Sbjct: 433 KD-GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 175/391 (44%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +VT+ +L+ GL GR+ EA L +++ C+P+V+T+++L +L+L
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP----------- 110
F+EMV + C DV T + +I+ LCK G M ++GM P
Sbjct: 621 FDEMVRKG---CVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677
Query: 111 ------------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
D N+M + L K +++EA L++ M +++ P+
Sbjct: 678 LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD 737
Query: 147 TCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
TY +L+DG F ++K G DV +Y L++ K + A+ + R
Sbjct: 738 LFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797
Query: 193 EMLSEGIRADATTYNTLFMAI--------------NNVP----PDSHVYTTYIDGLYKNG 234
M + D TY++L ++ N++ P+ VY++ ID K G
Sbjct: 798 AMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKG 857
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V A+++F + +C I T N L+ GL K GRL +A + M+ G PD+VTY
Sbjct: 858 MVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEE-MEKVGCVPDLVTY 916
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NI+I G K G +A M+E G+ P+
Sbjct: 917 NILIDGVGKMGMVDEAESYFKRMKEKGIVPD 947
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 160/371 (43%), Gaps = 60/371 (16%)
Query: 5 SGGF-----VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
GGF ++ G++ P+ TF + GR+ AA +++ DP V
Sbjct: 264 KGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVH 323
Query: 60 TFNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDGF----------M 103
TF L ALV +E F + C P+VVT T +++GL K G M
Sbjct: 324 TFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEM 383
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ PD + N + D L K G+ + A L + M R + PN TYN ++
Sbjct: 384 KENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQ 443
Query: 158 --AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR--------- 200
AW +G DV++YN LI+ K ++ +++ +EM+ +G
Sbjct: 444 PEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNA 503
Query: 201 --------ADATT-YNTL-FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
AD T Y +L F ++ + Y T + NG V EA+K+ + H+
Sbjct: 504 GHEGTIEGADRTVEYPSLGFKSLGEI-----TYNTLMSAFIHNGHVDEAVKLLEVMKKHE 558
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C+ T+ T L+DGL K GRL A + M+ G P VVTY+ ++ F K Q +++
Sbjct: 559 CIPTVVTYTTLVDGLGKAGRLDEAVSLLRE-MEKQGCEPSVVTYSSLMASFYKRDQEEES 617
Query: 311 NGLLLDMEETG 321
L +M G
Sbjct: 618 LSLFDEMVRKG 628
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 147/339 (43%), Gaps = 48/339 (14%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE 74
S P+ +N ++ GL R+ EA +L + P++ T+ +L L EE
Sbjct: 697 SSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEE 756
Query: 75 MVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
N F + + PDVV T+++D L K G M + PDVVT + + D
Sbjct: 757 AFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLID 816
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
+L K+G++EEA E I + PN Y++L+D F + C
Sbjct: 817 SLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPP 876
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
++ +YN L++G K + A L EM G D TYN L
Sbjct: 877 NIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNIL----------------- 919
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
IDG+ K G V EA F + V + T LI+ L K+ +L A ++F M+ G
Sbjct: 920 IDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDS-MEEEG 978
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTYN++I + G+ +A + +M+ G P+
Sbjct: 979 YNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 125/318 (39%), Gaps = 55/318 (17%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP--NVITFNTLALVALNLFEEMVNEF 79
+M SL++ + + A +F ++ F C+P N+ F LV + V F
Sbjct: 216 SMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVF 275
Query: 80 GVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
G + +PD T + + G M+ G+ P V T V+ D L K
Sbjct: 276 GKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKS 335
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
G ++EA M +PN TY TL +NG K +E
Sbjct: 336 GNIDEACKFFNGMKNLRCSPNVVTYTTL---------------------VNGLAKAGRLE 374
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A + EM NN PD+ Y T IDGL K G A +F
Sbjct: 375 EACEVFVEMKE-----------------NNCSPDAIAYNTLIDGLGKAGEADMACGLFKE 417
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + V + T N +I L K GR AW +FH L + G PDV TYN +I K G
Sbjct: 418 MKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQ-GAVPDVFTYNTLIDVLGKGG 476
Query: 306 QHQKANGLLLDMEETGLE 323
Q K ++ +M E G E
Sbjct: 477 QMDKVLAIIKEMVEKGGE 494
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 36/237 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S ++ + P++VT++SLI L EGR+ EA F+ C PNV +
Sbjct: 787 GKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVY 846
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
++L +V AL LFEEM C P++VT N++ GL K G
Sbjct: 847 SSLIDSFGKKGMVDRALELFEEMQRR---QCPPNIVTYNNLLSGLAKAGRLNVAEKLLEE 903
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G PD+VT N++ D + K G ++EA + M ++ + P+ T+ +L++ K
Sbjct: 904 MEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDK 963
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
G V +YN+LI+ + V +A + EM +G D T
Sbjct: 964 LLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGIT 1020
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 38/240 (15%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV---NPNTCTYN----TLMD 155
M +G R ++++++T L G + LE+ Q NP+T YN L+
Sbjct: 208 MWKEGHR---ISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVK 264
Query: 156 GFAWWSK----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
G + S + D ++ I ++ + + ++ A +EM+ GI
Sbjct: 265 GGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI------ 318
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
P H +T ID L K+G + EA K F+ + N +C + T L++GL
Sbjct: 319 -----------DPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGL 367
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K GRL+ A ++F + +N +PD + YN +I G K G+ A GL +M++ GL PN
Sbjct: 368 AKAGRLEEACEVFVEMKEN-NCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPN 426
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 24/207 (11%)
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
V+ Q+D++ C + +A G H V +Y ++I + + V + M
Sbjct: 156 VVNQKDLHLAKCFFT-----WAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWK 210
Query: 197 EGIRADATTYNTL---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLE 238
EG R +L F + NNV P +++Y ++ L K GF
Sbjct: 211 EGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHS 270
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ VF +G + +T + + GRL A + ++++ G+ P V T+ ++I
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKS-GIDPGVHTFTVLI 329
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
K G +A M+ PN
Sbjct: 330 DALVKSGNIDEACKFFNGMKNLRCSPN 356
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 157/348 (45%), Gaps = 54/348 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
+L R+ F P++VT+N +I LC ++ A + +L + C P VIT+ L
Sbjct: 169 VLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATI 228
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+ L EEM+ G++ PD+ T II G+CK+G + +G P
Sbjct: 229 VEGGINEAMKLLEEMLAR-GLL--PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEP 285
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
DV++ N++ GK +E L+ M R PN TY+ L+ +
Sbjct: 286 DVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVL 345
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
K D YSY+ LI+ CK+ ++ A+ + M+S G D YNT+ A
Sbjct: 346 KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAA---- 401
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
L KNG +A+++F+ + C + + N +I L G A
Sbjct: 402 -------------LCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALG 448
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ ++ G+ PD +TYN +I C++G ++A GLL DME++G P
Sbjct: 449 MVPAMISK-GIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 495
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 52/333 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL +L P+M T+N++I+G+C EG + AA L L C+P+VI++N L L
Sbjct: 239 LLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFL 298
Query: 70 NL-----FEEMVNE-FGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
N E++V E F C+P+ VT + +I LC+ G M+++ + PD
Sbjct: 299 NQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTY 358
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
+ + + L K+G+++ A +++ MI P+ YNT++
Sbjct: 359 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 418
Query: 160 WSKGCRHDVYSYNILINGY--CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
GC +V SYN +I+ C DR+ A+ + M+S+GI D TYN+L
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRS--RALGMVPAMISKGIDPDEITYNSL-------- 468
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
I L ++G V EA+ + + T+ + N ++ GLCK+ R+ A +
Sbjct: 469 ---------ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 519
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
F +++ G P+ TY ++I G G +A
Sbjct: 520 FAEMIEK-GCRPNETTYILLIEGIGFAGWRTEA 551
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L+ + PN VT++ LI LC GRI EA + K + P+ ++
Sbjct: 301 GKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSY 360
Query: 62 NTL--AL-------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FMM 104
+ L AL +A+ + + M++ C PD+V I+ LCK+G F
Sbjct: 361 DPLISALCKEGRLDLAIGIMDYMISNG---CLPDIVNYNTILAALCKNGNANQALEIFNK 417
Query: 105 DQGM--RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGF 157
+GM P+V + N M L G A ++ MI + ++P+ TYN+L+ DG
Sbjct: 418 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGL 477
Query: 158 AWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ G R V SYNI++ G CK R ++DA+ + EM+ +G R + TTY
Sbjct: 478 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYIL 537
Query: 209 LFMAI 213
L I
Sbjct: 538 LIEGI 542
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 31/215 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---KGCR----------HDVYS 170
K GK E+ LE ++ + P+ L+ GF + K R DV++
Sbjct: 90 KAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHTEPDVFA 149
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN +I+G+CK +E A + M + G D TYN + ++ N
Sbjct: 150 YNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCN--------------R 195
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G A+ V + C+ T+ T LI+ G + A + ++ GL PD
Sbjct: 196 RKLGL---ALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLAR-GLLPD 251
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYN +I G CKEG ++A L+ + G EP+
Sbjct: 252 MYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPD 286
>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
Length = 388
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 166/366 (45%), Gaps = 64/366 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
IL PN+V FNS++ G G + A + + CDP+ +T+NTL V
Sbjct: 2 ILGGAVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLER 61
Query: 68 ---ALNLFEEMVNEFGVICKPDVV--TCTNIIDGLCKD----------GFMMDQGMRPDV 112
A L E+M + G+ +P V+ T N+I C+ M+D G +PDV
Sbjct: 62 FDSARELLEQMWDS-GI--RPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDV 118
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
VT N + L K + ++A L++M + + PNT TYNT+++G W S+
Sbjct: 119 VTYNTLISGLCKVRRADDA---LQLMREMEPAPNTITYNTVINGL-WRSRKDTEAQALLD 174
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
GC V +YN +I C+ R +E AV + M + D T+ TL
Sbjct: 175 EMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDK 234
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+MA +P D YT ++ L G +A ++F+ + + T+ + N
Sbjct: 235 RLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYN 294
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
L+ GLCK R++ A +F MQ + PDVV+Y +I G C + +A L D
Sbjct: 295 VLLKGLCKALRVEHALVLFRE-MQEREIQPDVVSYTTVIKGLCAARRIDEAIDLFRDT-- 351
Query: 320 TGLEPN 325
+ LEPN
Sbjct: 352 SFLEPN 357
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 160/346 (46%), Gaps = 53/346 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L + + PN+VT+ S+I G C G + A +FK + C PN T+ +L + L
Sbjct: 446 LNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSL-IYGLI 504
Query: 71 LFEEMVNEFGVICK-------PDVVTCTNIIDGLCK-----DGF----MMDQ-GMRPDVV 113
+++ +I K P V+T T +I G CK + F MM+Q G+ PD
Sbjct: 505 QDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQ 564
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------W 159
NV+TD L K G+ EEA L +++ V TY +L+DGF+
Sbjct: 565 AYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKM 621
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
++GC+ D+Y+Y++L+ CK + + +A+S+ +M G++ +
Sbjct: 622 VNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV--------------- 666
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
YT I + K G A +F+ + + + T I CKIGR++ A +
Sbjct: 667 --AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIG 724
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+TPDVVTYNI I+G G +A L M + EPN
Sbjct: 725 E-MERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPN 769
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 155/348 (44%), Gaps = 48/348 (13%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---VALNLFEEMVNEFGV 81
T N+L+ G C + +A L + + C N ++ L A + E +V F +
Sbjct: 216 TCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMM 275
Query: 82 I---CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKM 128
+ C ++ T T +I GLCK+G + D +G+ P V T N M D K G+M
Sbjct: 276 VHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRM 335
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYSYNILI 175
++A + +M Q NP+ TYN+L+ G ++G V ++ LI
Sbjct: 336 KDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLI 395
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NGYCK ++DA+ + M+S + D Y L M N +
Sbjct: 396 NGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLA 455
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ YT+ IDG K G V A++VF + + C T LI GL + +L A +
Sbjct: 456 PNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL 515
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+TP V+TY +I G CK+ + A L ME+ GL P+
Sbjct: 516 ITK-MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 562
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 55/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + P++ T+N++I G C GR+ +A + + C+P+ T+
Sbjct: 298 GRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTY 357
Query: 62 NTLAL----VALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCK-----DGFMMDQGM- 108
N+L L+ EE++N G I + P V+T TN+I+G CK D + M
Sbjct: 358 NSLIYGLCGGKLDEAEELLN--GAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMI 415
Query: 109 ----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+ D+ V+ + L K +++EA L M + PN TY +++DG+
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVG 475
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+GC + ++Y LI G +D+ + A++L +M +GI TY TL
Sbjct: 476 AALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLI 535
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N + PD Y D L K+G EA +S + V
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVV 592
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
LT T L+DG K G A + M N G D+ TY++++ CK+ + +A
Sbjct: 593 LTKVTYTSLVDGFSKAGNTDFAAVLIEK-MVNEGCKADLYTYSVLLQALCKQKKLNEALS 651
Query: 313 LLLDMEETGLEPN 325
+L M +G++ N
Sbjct: 652 ILDQMTVSGVKCN 664
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++ +G+ PD VT N M K G + A+ ++ + + +T T N L+ G+
Sbjct: 170 LVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSD 229
Query: 158 ---AWWS------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A W GCR + YSY ILI G C+ R V +A+ L M+ +G +
Sbjct: 230 LRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNL----- 284
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
H YT I GL K G + +A + + V ++ T N +IDG CK
Sbjct: 285 ------------HTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKS 332
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+K A I ++ QN G PD TYN +I+G C G+ +A LL G P
Sbjct: 333 GRMKDALGIKALMEQN-GCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPT 387
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/358 (20%), Positives = 126/358 (35%), Gaps = 105/358 (29%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
VL+ +++ ++ T++ L++ LC + ++ EA + ++ V N++ + +
Sbjct: 616 VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A +LF EM++ KP T T I CK G M G+
Sbjct: 676 IKEGKHDHAKSLFNEMISSGH---KPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVT 732
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDVVT N+ + G ++ A L+ M+ PN TY L+ F
Sbjct: 733 PDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVD 792
Query: 158 ---AW--------WS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
W W G V +Y+ +I G+CK +E+A L ML +
Sbjct: 793 TSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGK-- 850
Query: 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
++ P+ +YT I KC I+
Sbjct: 851 ---------------DISPNEEIYTMLI----------------------KCCCDIKLFG 873
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ F M G P + +Y+ +I G C EG + +A L D+
Sbjct: 874 KAVS--------------FVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDL 917
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 40/282 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+G + TP++VT+N I G G I A K++ C+PN T
Sbjct: 713 IGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWT 772
Query: 61 FNTL--ALVALNLF-EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+ L + ++L V+ G+ ++ +++ MM G+ P VVT +
Sbjct: 773 YWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLER------MMKHGLNPTVVTYSS 826
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWSK-----------G 163
+ K ++EEA LL+ M+ +D++PN Y L+ + K G
Sbjct: 827 IIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFG 886
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ + SY+ LI G C + + + A SL ++L + + L
Sbjct: 887 FQPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILN------------- 933
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
DGL K G V ++ +A+ N C + E+ + L D +
Sbjct: 934 ----DGLLKAGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 51/189 (26%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN+ + + E L ++ EG+ D TYNT+ MA
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYC---------------- 190
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA-WDIFHM--------- 280
K G + A + F + + TCN L+ G C+ L+ A W + M
Sbjct: 191 -KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249
Query: 281 ------------------------LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+M + G + ++ TY ++I G CKEG+ A GLL +
Sbjct: 250 YSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDE 309
Query: 317 MEETGLEPN 325
M G+ P+
Sbjct: 310 MPLRGVVPS 318
>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 54/370 (14%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G ++ GR C PN+V +N++I G C G I A +FK+L + P + TF T+
Sbjct: 224 GRKLIEGRWGKGCI-PNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMI 282
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------- 108
VA + V E G+ + V NIID + G+ +D
Sbjct: 283 NGFCKEGDFVASDRLLSEVKERGL--RVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAND 340
Query: 109 -RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+PDV T N++ + L K+GK E A L+ ++ + PN +Y L+ +
Sbjct: 341 CKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIAS 400
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+GC+ D+ +Y ILI+G +++DAV++ +++ G+ DA YN L
Sbjct: 401 KLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGL 460
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M N+ PD++VY T IDG ++G EA KVFS + +
Sbjct: 461 CKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDV 520
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
N +I G C+ G L A + M L PD TY+ +I G+ K+ A +
Sbjct: 521 VHHNAMIKGFCRSGMLDEALACMNR-MNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579
Query: 316 DMEETGLEPN 325
ME+ +PN
Sbjct: 580 YMEKNKCKPN 589
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 145/329 (44%), Gaps = 54/329 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---- 66
+G I+ + P++ T+N LI LC EG+ A + + PN +++ L
Sbjct: 333 IGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCK 392
Query: 67 -----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPD 111
+A L +M E G CKPD+VT +I GL G M +D+G+ PD
Sbjct: 393 SKEYDIASKLLLQMA-ERG--CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPD 449
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------- 160
N++ L K G+ A L M+ R++ P+ Y TL+DGF
Sbjct: 450 AAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFS 509
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
KG + DV +N +I G+C+ +++A++ M E ++
Sbjct: 510 LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE-----------------HLV 552
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD Y+T IDG K + A+K+F + +KC + T LI+G C G K+A +
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
F MQ L P+VVTY +I KE
Sbjct: 613 FKE-MQLRDLVPNVVTYTTLIRSLAKESS 640
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 52/286 (18%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ +++ +V + + PDV+ C +++ L K M D+G D + +
Sbjct: 153 AVEIYDYVVELYDSV--PDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCI 210
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + +GK+E L+E W KGC ++ YN +I G
Sbjct: 211 LVKGMCNEGKVEVGRKLIE---------------------GRWGKGCIPNIVFYNTIIGG 249
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------FMAINNVPPDSH------- 221
YCK ++E+A + +E+ +G T+ T+ F+A + + +
Sbjct: 250 YCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVS 309
Query: 222 --VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
ID Y++G+ ++ + I + C + T N LI+ LCK G+ ++A
Sbjct: 310 VWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLD 369
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL P+ ++Y +I +CK ++ A+ LLL M E G +P+
Sbjct: 370 EASKK-GLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPD 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 62/312 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++V N++IKG C G + EA ++N P+ T++T+ A+ +F
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIF 578
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
M CKP+VVT T++I+G C G D KM E
Sbjct: 579 RYMEKN---KCKPNVVTYTSLINGFCCQG-----------------------DFKMAEET 612
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ M RD+ PN TY TL+ A S VY + +++ C V + V+
Sbjct: 613 --FKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKC----VPNEVTF-- 664
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
L +G T+ L + S +++ + + +G+ A SA+
Sbjct: 665 NCLLQGF-VKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSAL------ 717
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
C LC G +K A +F M G +PD V++ ++HGFC G ++
Sbjct: 718 ----VC------LCVHGMVKTAC-MFQDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRN 766
Query: 313 L-LLDMEETGLE 323
+ ++ E GLE
Sbjct: 767 MDFCNLGEKGLE 778
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 163/374 (43%), Gaps = 70/374 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L+ ++ F P+ T++ +I LC ++ +A LF+++ + P+V T
Sbjct: 201 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 260
Query: 61 FNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF- 102
+ L L+ A LFEEM + V C P VVT T +I K D F
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRS---VGCSPTVVTYTALIHAYLKAKQVPQANDIFH 317
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI----------------QRDVNP 145
M+D G RP+ VT + D L K G + +A + +I + + P
Sbjct: 318 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAP 377
Query: 146 NTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
N TY L+DG A S GC + Y+ LI+G+CK ++ A +
Sbjct: 378 NVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVF 437
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M G P H YT+ ID ++K+G + AMKV S + C
Sbjct: 438 LQMTKCGYL-----------------PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSC 480
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T +IDGLC+IG + A + LM+ G +P+VVTY +I G K G+ +
Sbjct: 481 TPNVVTYTAMIDGLCRIGESEKALKLLS-LMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539
Query: 312 GLLLDMEETGLEPN 325
L M G PN
Sbjct: 540 DLFTQMSRKGCSPN 553
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/390 (25%), Positives = 153/390 (39%), Gaps = 75/390 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + M TP++ T+ LI C G I +A LF+++ C P V+T+
Sbjct: 238 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 297
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L L ++F MV+ C+P+ VT ++DGLCK G +
Sbjct: 298 ALIHAYLKAKQVPQANDIFHRMVD---AGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 354
Query: 106 ------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ P+VVT + D L K K++ A+ LL+ M+ PN
Sbjct: 355 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH 414
Query: 148 CTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF K G V++Y LI+ KD ++ A+ + +
Sbjct: 415 IVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQ 474
Query: 194 MLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
ML + + TY + M P+ YT IDGL K G
Sbjct: 475 MLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGK 534
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT-Y 294
+ ++ +F+ + C T LI+ LC G L A + + Q P + Y
Sbjct: 535 IDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQT--YWPKYLQGY 592
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
I GF K + G+L +ME G P
Sbjct: 593 RCAIQGFSK--SFIASLGILEEMESYGTVP 620
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 138/338 (40%), Gaps = 50/338 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
PN+VT+ +L+ GLC ++ A L + C+PN I ++ L +
Sbjct: 375 LAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQ 434
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
F + K P V T T++ID + KDG M+ P+VVT M D L
Sbjct: 435 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 494
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWS-KGCRHDV 168
+ G+ E+A LL +M ++ +PN TY L+DG F S KGC +
Sbjct: 495 CRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 554
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y +LIN C ++ A L EM TY P Y I
Sbjct: 555 VTYRVLINHLCAAGLLDKARLLLGEM--------KQTY---------WPKYLQGYRCAIQ 597
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP-GL 287
G K+ + ++ + + ++ V LID K GRL+IA ++ +M+ P +
Sbjct: 598 GFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 655
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y +I C Q ++A L +M G P
Sbjct: 656 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 693
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 157/386 (40%), Gaps = 71/386 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + PN+VT+ +L+ G + ++ R+ + C+PN FN+L
Sbjct: 64 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC 123
Query: 66 -----LVALNLFEEMV-----------NEF-GVICKPDVVTCTNIIDGLCK-DGFMMDQG 107
A L M N F G IC + + +++D K G M+
Sbjct: 124 NEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAAN 183
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ V + L GK ++A L++ M+++ P+T TY+ ++ +K
Sbjct: 184 CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 243
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---F 210
G DVY+Y ILI+ +CK +E A L EM S G TY L +
Sbjct: 244 LLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAY 303
Query: 211 MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI--------- 246
+ VP P+ Y +DGL K G + +A +V++ +
Sbjct: 304 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 363
Query: 247 -------GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
H + T L+DGLCK ++ A ++ ++ + G P+ + Y+ +I
Sbjct: 364 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALID 422
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ A + L M + G P+
Sbjct: 423 GFCKAGKIDSAQEVFLQMTKCGYLPS 448
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 107/285 (37%), Gaps = 46/285 (16%)
Query: 86 DVVTCTNIIDGLCKDGFMMD-------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
D T LCK+G D + + D V M L + +EA L M
Sbjct: 9 DRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRM 68
Query: 139 IQRDVNPNTCTYNTLMDGF------AW--------WSKGCRHDVYSYNILINGYCKDRNV 184
PN TY TL+ GF W ++GC + +N L++ YC +++
Sbjct: 69 RCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDY 128
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI---NNVP-PD--SHVYTTYIDGLYKN----- 233
A L M + G YN +I +P PD Y + L N
Sbjct: 129 AYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNK 188
Query: 234 -------------GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
G +A ++ + V T + +I LC +++ A+ +F
Sbjct: 189 VNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQE 248
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+TPDV TY I+I FCK G ++A L +M G P
Sbjct: 249 -MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPT 292
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + LL + +PN+VT+ +LI GL G+I + LF +++ C PN +T
Sbjct: 497 IGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVT 556
Query: 61 FNTL--ALVALNLFEE---MVNEFGVICKPDVVTCTN-IIDGLCKDGF--------MMDQ 106
+ L L A L ++ ++ E P + I G K M
Sbjct: 557 YRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY 616
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT------------CTYNTLM 154
G P ++ D SK G++E A L + M++ + T C + +
Sbjct: 617 GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVE 676
Query: 155 DGFAWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ F +S+ R ++ + LI G + + ++A+ LC + EG+
Sbjct: 677 EAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGV 725
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 160/342 (46%), Gaps = 55/342 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P+ VTFN LI GLC +G + A+L + + C PN +T+NTL A
Sbjct: 235 CF-PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKA 293
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
++L + MV+ C P+VVT II+GL K G M ++G + + +
Sbjct: 294 ISLLDRMVSS---KCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSAL 350
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------C 164
L K+GK +EA L + M ++ NT Y+ ++DG K C
Sbjct: 351 ISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRC 410
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ + Y+Y+ L+ G+ + N A+ + ++ MA +N + Y+
Sbjct: 411 KPNAYTYSSLMKGFFEAGNGHKAIEMWKD-----------------MAKHNFTQNEVCYS 453
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQ 283
I GL K+G V EAM V++ + C + +I+GL G ++ A ++ ML Q
Sbjct: 454 VLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQ 513
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P PDVVTYNI+++ CK+ +A LL M + G +P+
Sbjct: 514 EPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPD 555
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 46/328 (14%)
Query: 40 LEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK 99
E R K N NVI L AL + ++ GV P+V+T +I +CK
Sbjct: 125 FECKRTVKSFNSVL---NVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCK 181
Query: 100 DGFMMD--QGMR--------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G + D Q R PDV T + D L K +++EA LL+ M P+ T
Sbjct: 182 VGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVT 241
Query: 150 YNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+N L++G + KGC + +YN LI+G C +E A+SL M+
Sbjct: 242 FNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISLLDRMV 301
Query: 196 SEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVL 237
S + TY T+ M + +VY+ I GL+K G
Sbjct: 302 SSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGLFKEGKSQ 361
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EAM++F + +C L + +IDGLC+ G+ A ++ M N P+ TY+ +
Sbjct: 362 EAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSE-MTNNRCKPNAYTYSSL 420
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GF + G KA + DM + N
Sbjct: 421 MKGFFEAGNGHKAIEMWKDMAKHNFTQN 448
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 58/352 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L ++ +TP+ +FNS++ +C G++ A + + F C+P+VI++N+L
Sbjct: 43 FLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHC 102
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQGM-----RPD 111
A + E + G ICKPD+V+ ++ +G K D + G+ P+
Sbjct: 103 RNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPN 162
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VVT + D K G+++ A M + ++PN T+ L+DG
Sbjct: 163 VVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDG--------------- 207
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
YCK ++E AVSL +EM + + TY L M
Sbjct: 208 ------YCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVE 261
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ V P+S VYTT IDG ++ G AMK + + N L I +I GLC G+LK
Sbjct: 262 DRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKE 321
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +I M+ L PD+V + M++ + K G+ + A + + E G EP+
Sbjct: 322 ATEIVED-MEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD 372
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 176/403 (43%), Gaps = 100/403 (24%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-- 65
FV +G +++ C +PN+VT+++ I C G + A + F + PNV+TF L
Sbjct: 149 FVYMG-VMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDG 207
Query: 66 -------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------------- 99
VA++L++EM V +VVT T +IDG CK
Sbjct: 208 YCKAGDLEVAVSLYKEMRR---VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRV 264
Query: 100 -----------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
DGF M++QGMR D+ V+ L +GK++EA
Sbjct: 265 EPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATE 324
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
++E M + D+ P+ + T+M+ + +G DV + + +I+G
Sbjct: 325 IVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384
Query: 180 KDRNVEDAV------------------SLCREMLSEGIRADATTYNTLFMAINN--VPPD 219
K+ + +A+ +LC+E D LF I+ + PD
Sbjct: 385 KNGQLHEAIVYFCIEKANDVMYTVLIDALCKE-------GDFIEVERLFSKISEAGLVPD 437
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+YT++I GL K G +++A K+ + + +L + LI GL G + A +F
Sbjct: 438 KFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFD 497
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
++ N G++PD ++++I + KEG A+ LLLDM+ GL
Sbjct: 498 EML-NSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 56/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTL--ALVALNLFEEM 75
P+++++NSLI G C G I A+ + + L F C P++++FN+L + + +E+
Sbjct: 89 PDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEV 148
Query: 76 VNEFGVI---CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
GV+ C P+VVT + ID CK G M + P+VVT + D
Sbjct: 149 FVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGY 208
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-HDVYS----------- 170
K G +E A L + M + ++ N TY L+DGF + R ++YS
Sbjct: 209 CKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNS 268
Query: 171 --YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
Y +I+G+ + + ++A+ +ML++G+R D T Y +
Sbjct: 269 LVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVED 328
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M +++ PD ++TT ++ +K+G + A+ ++ + + + +IDG+ K G+
Sbjct: 329 MEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQ 388
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A F + N V Y ++I CKEG + L + E GL P+
Sbjct: 389 LHEAIVYFCIEKAND------VMYTVLIDALCKEGDFIEVERLFSKISEAGLVPD 437
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 159/353 (45%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+ I+ L GRI EA R+ K++ C P+V+T+ L AL ++ +
Sbjct: 262 PNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMEL 321
Query: 79 F----GVICKPDVVTCTNIID--------GLCKDGF--MMDQGMRPDVVTLNVMTDNLSK 124
F KPD VT ++D G K+ + M G PDV+T ++ + L K
Sbjct: 322 FVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCK 381
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G ++EA LL+VM ++ V PN TYNTL+ G ++ G Y+
Sbjct: 382 AGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYT 441
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y + I+ Y K + A+ +M GI + N ++
Sbjct: 442 YILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLK 501
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N + PDS Y + K G V EA+++ S + ++C I N LI+ L K GR+
Sbjct: 502 SNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVD 561
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW +F L ++ L P VVTYN +I G KEGQ Q+A L M G PN
Sbjct: 562 EAWKMFCRL-KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPN 613
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 150/334 (44%), Gaps = 61/334 (18%)
Query: 29 LIKGLCTEGRILEAARLF----KKLNVFCCDPNVITFNTLAL---------VALNLFEEM 75
+IK LC + L A +F K+L V P + ++N L +A NLF EM
Sbjct: 760 IIKVLCKHKQALVAQSVFIRFTKELGV---KPTLESYNFLIEGFLGVHNDEMAWNLFTEM 816
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGM-----RPDVVTLNVMTDNLSKD 125
N C PDV T ++D K G F + + M +P+ +T N++ NL K
Sbjct: 817 KN---AGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKS 873
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
+++A L ++ D +P CTY L+DG + GCR + Y
Sbjct: 874 NSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIY 933
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
NILING+ K +V A L + M+ EGIR PD YT+ + L
Sbjct: 934 NILINGFGKTGDVNTACELFKRMVREGIR-----------------PDLKSYTSLVGCLC 976
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ G V +A+ F + L N +IDGL + R++ A ++ MQ+ G+ PD+
Sbjct: 977 EAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDE-MQSRGINPDL 1035
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN +I G ++A L +++ GLEPN
Sbjct: 1036 FTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 157/382 (41%), Gaps = 87/382 (22%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
G++ + F N ++N LI L G EA +++++ + P++ TF+ L +
Sbjct: 182 FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGK 241
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
+ D T ++++ M G++P++ T + L + G+++E
Sbjct: 242 -------------RRDTETVKSLLEE------MESLGLKPNIYTYTICIRVLGRAGRIDE 282
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------------------------- 157
A +++ M P+ TY L+D
Sbjct: 283 ACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLD 342
Query: 158 ------------AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
+WS+ G DV ++ IL+N CK N+++A L M +G+
Sbjct: 343 KFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLP 402
Query: 202 DATTYNTLFMAI-------------NN-----VPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+ TYNTL + NN V P ++ Y +ID K+G +A++ F
Sbjct: 403 NLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETF 462
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ I CN + L ++GRL+ A IF+ L N GL PD VTYN+M+ + K
Sbjct: 463 EKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSN-GLAPDSVTYNMMMKCYSK 521
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
GQ +A LL DM E EP+
Sbjct: 522 AGQVDEAIELLSDMSENQCEPD 543
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 164/411 (39%), Gaps = 91/411 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + R+ P +VT+N+LI GL EG++ A LF + C PN ITF
Sbjct: 558 GRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITF 617
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
NT+ +AL + +M + C PDV+T II GL +
Sbjct: 618 NTILDCLCKNDEVDLALKMLYKMTT---MNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQ 674
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDG------ 156
M + + PD VTL + + K+G ME+A + E + R V + + LM G
Sbjct: 675 MKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAG 734
Query: 157 ------------------------------------------FAWWSK--GCRHDVYSYN 172
F ++K G + + SYN
Sbjct: 735 TEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYN 794
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LI G+ N E A +L EM + G D TYN L M +
Sbjct: 795 FLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICS 854
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ P++ + I L K+ + +A+ +F + + T T L+DGL K GRL+ A
Sbjct: 855 SCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEA 914
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++F M + G P+ YNI+I+GF K G A L M G+ P+
Sbjct: 915 KELFEE-MVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPD 964
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 144/325 (44%), Gaps = 59/325 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+ P+++TF L+ LC G I EA L + PN+ T+NTL L+ +N ++ +
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424
Query: 77 NEF------GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+ F GV+ P T ID K G M +G+ P++V N
Sbjct: 425 DLFNNMETLGVV--PTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLY 482
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+L++ G++ EA + + + P++ TYN +M C Y K
Sbjct: 483 SLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMK--------C-------------YSK 521
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
V++A+ E+LS+ M+ N PD V + I+ LYK G V EA
Sbjct: 522 AGQVDEAI----ELLSD-------------MSENQCEPDIIVINSLINTLYKAGRVDEAW 564
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K+F + + K T+ T N LI GL K G+++ A ++F + N G P+ +T+N ++
Sbjct: 565 KMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGN-GCPPNTITFNTILDC 623
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
CK + A +L M P+
Sbjct: 624 LCKNDEVDLALKMLYKMTTMNCMPD 648
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 155/374 (41%), Gaps = 50/374 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR V+ R+ + P+ VT+N ++K G++ EA L ++ C+P++I
Sbjct: 487 MGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIV 546
Query: 61 FNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDG----------FMM 104
N+L L +E F + P VVT +I GL K+G M
Sbjct: 547 INSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMT 606
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
G P+ +T N + D L K+ +++ A +L M + P+ T+NT++ G
Sbjct: 607 GNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVS 666
Query: 158 -AWW-----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-------------- 197
A W K D + L+ G K+ +EDA + + +
Sbjct: 667 DAIWLFHQMKKMLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLM 726
Query: 198 -GIRADATTYNTLF----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
GI A T T+ + V D V I L K+ L A VF V
Sbjct: 727 GGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGV 786
Query: 253 L-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T+E+ N LI+G + ++AW++F M+N G PDV TYN+++ K G+ +
Sbjct: 787 KPTLESYNFLIEGFLGVHNDEMAWNLFTE-MKNAGCAPDVFTYNLLLDAHGKSGKINELF 845
Query: 312 GLLLDMEETGLEPN 325
L M + +PN
Sbjct: 846 ELYEQMICSSCKPN 859
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 141/342 (41%), Gaps = 55/342 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + PN+ T+N+LI GL R+ +A LF + P T+
Sbjct: 383 GNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTY 442
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
+ + AL FE+M G+ P++V C + L + G + +
Sbjct: 443 ILFIDFYGKSGRSDKALETFEKMKIR-GI--APNIVACNASLYSLAEMGRLREAKVIFNR 499
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G+ PD VT N+M SK G+++EA LL M + P+ N+L++
Sbjct: 500 LKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGR 559
Query: 158 --AWWSKGCR-------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W CR V +YN LI G K+ V+ A+ L M G
Sbjct: 560 VDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNG---------- 609
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PP++ + T +D L KN V A+K+ + C+ + T N +I GL
Sbjct: 610 -------CPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIE 662
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
R+ A +FH + + LTPD VT ++ G K G + A
Sbjct: 663 KRVSDAIWLFHQMKKM--LTPDCVTLCTLLPGVVKNGLMEDA 702
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P T+ L+ GL GR+ EA LF+++ + C PN +N L A
Sbjct: 891 FSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTAC 950
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
LF+ MV E G+ +PD+ + T+++ LC+ G + D G+ D + N+M
Sbjct: 951 ELFKRMVRE-GI--RPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMI 1007
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM--DGFAWWSK------------GCR 165
D L + ++EEA L + M R +NP+ TYN+L+ G A + G
Sbjct: 1008 DGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLE 1067
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+V++YN LI GY N + A ++ + M+ G + T+ L
Sbjct: 1068 PNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 167/350 (47%), Gaps = 52/350 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G SG +L ++ TP++VT+N+LI GLC ++EA + KL +P+ T+
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324
Query: 62 NTL-----ALVALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCKDGFM---------- 103
NTL + L E+++ G ICK PD T ++I+GLC++ +
Sbjct: 325 NTLIDGYCKMGMLQNAEKILQ--GAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAA 382
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ +G++P V+ N++ L ++G + +A ++ M + + + TYN +++G
Sbjct: 383 LGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCV 442
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+KG DV+++N LI+GYCK +E + + +M S G+ D TYN++
Sbjct: 443 SDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSV 502
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL K + M+ F + CV T N L + LCK G
Sbjct: 503 -----------------LNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAG 545
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ A D+ ++ N G+TPD V++ +I GF G + A L M E
Sbjct: 546 KVNEALDLVDEIL-NKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGE 594
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 176/413 (42%), Gaps = 99/413 (23%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLC--------TEGRILEAARLFKKLNVFCCDPN 57
G FV + +L M NSL++G+ +G++ EA +F++++ + C+P+
Sbjct: 54 GNFVAMENVLAE---TRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPS 110
Query: 58 VITFNTLA--LVALNLFEEMVNEF------GVICKPDVVTCTNIIDGLCKD--------- 100
V+++N + LV F++ F G++ PDV T T I C+
Sbjct: 111 VLSYNAIMNILVESGYFKQAHKVFLRMKNVGIV--PDVYTFTIRIKSFCRTKRPHSALRL 168
Query: 101 ---------------------GF---------------MMDQGMRPDVVTLNVMTDNLSK 124
GF M+ G+ PDV T N + L K
Sbjct: 169 LNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCK 228
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
G+++E+ LL ++++ + N T+N + G + +G DV +
Sbjct: 229 KGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVT 288
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------INNVP------- 217
YN LI G CK+ NV +A ++++ G+ D TYNTL + N
Sbjct: 289 YNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAI 348
Query: 218 -----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD Y + I+GL +N + A+ +F+A T+ N LI GLC+ G +
Sbjct: 349 CKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLIL 408
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + + + +N G + D+ TYN++I+G CK G AN L+ D G P+
Sbjct: 409 QALQMMNEMSEN-GCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPD 460
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 138/338 (40%), Gaps = 56/338 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L L P ++ +N LIKGLC EG IL+A ++ +++ C ++ T+N +
Sbjct: 375 ALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVIN 434
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQG 107
A NL + + + V PDV T +IDG CK M G
Sbjct: 435 GLCKMGCVSDANNLMNDAIAKGYV---PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ PDV+T N + + LSK K E+ E M+++ PN TYN L +
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEAL 551
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTLF-- 210
+KG D S+ +I+G+ + +++ A L R M + + TYN +
Sbjct: 552 DLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINA 611
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M PD++ Y IDG G K + + +
Sbjct: 612 FAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPS 671
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ T +I+ LC R+ A DI H ++ N G+ P+VV
Sbjct: 672 LTTFGRVINCLCVQHRVHEAVDIIHFMVHN-GIVPEVV 708
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 119/275 (43%), Gaps = 32/275 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S L+ + + P++ TFN+LI G C + ++ ++ K+ P+VIT
Sbjct: 439 MGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVIT 498
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MM 104
+N++ L E+++ F + C P+ +T + + LCK G ++
Sbjct: 499 YNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEIL 558
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM-IQRDVNPNTCTYNTLMDGFA----- 158
++G+ PD V+ + + +G ++ A L M Q V+ T TYN +++ FA
Sbjct: 559 NKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDL 618
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ GC D Y+Y ++I+G+C N + EM+ +G TT+ +
Sbjct: 619 HMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRV 678
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+ V H I + NG V E + S
Sbjct: 679 INCL-CVQHRVHEAVDIIHFMVHNGIVPEVVNSIS 712
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 160/352 (45%), Gaps = 54/352 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
T+N+L+KGLC EG+I EA R+ ++ P+V+T+NTL + L EEM
Sbjct: 139 TYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEM 198
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
+ GV +P+ VT ++ K+G M++ G+ PD T N M + K
Sbjct: 199 KSRGGV--EPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKA 256
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYSY 171
GK+ EA +++ M ++ + P+ CT NT++ + + K + D +Y
Sbjct: 257 GKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTY 316
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
LI GY K + + A+ L EM GI +YN L +
Sbjct: 317 GTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLE 376
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ PD I G G V +A + + + + I T N L+ GLC++ L+
Sbjct: 377 KGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEK 436
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ +F+ + + DVVTYN MI CKEG+ +A L+ DME EP+
Sbjct: 437 AFKLFNSWISKQN-SVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPD 487
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 51/323 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
+++ S +P+ T+N++I G C G++ EA R+ ++ P++ T NT
Sbjct: 233 KMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNT--------- 283
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
M++ + KP+ + K G+++D+ VT + K + ++A
Sbjct: 284 --MLHTLCMEKKPE--EAYELTVKARKRGYILDE------VTYGTLIMGYFKGKQEDKAL 333
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
L E M +R + P+ +YN L+ G KG D S NI+I+GY
Sbjct: 334 KLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGY 393
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
C + V+ A +M+ + D T N L + GL + + +
Sbjct: 394 CWEGMVDKAFQFHNKMVGNSFKPDIFTRNIL-----------------LRGLCRVDMLEK 436
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A K+F++ + + + + T N +I LCK GRL A+D+ M+ PD TYN ++
Sbjct: 437 AFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLM-TDMEVKKFEPDQYTYNAIV 495
Query: 299 HGFCKEGQHQKANGLLLDMEETG 321
G+ ++A + + ETG
Sbjct: 496 RALTHAGRTEEAEKFMSKLSETG 518
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 113/268 (42%), Gaps = 69/268 (25%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAW---------- 159
DV T N + L +GK++EA + + M + P+ TYNTL+DG F W
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195
Query: 160 ---------------------W------------------SKGCRHDVYSYNILINGYCK 180
W G D ++YN +ING+CK
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF--MAINNVPPDSH----------------V 222
+ +A + EM +G++ D T NT+ + + P +++
Sbjct: 256 AGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVT 315
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T I G +K +A+K++ + V ++ + N LI GLC G+ A D + L+
Sbjct: 316 YGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELL 375
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ GL PD V+ NI+IHG+C EG KA
Sbjct: 376 EK-GLVPDEVSCNIIIHGYCWEGMVDKA 402
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 29/165 (17%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV++YN L+ G C + +++A+ + EM S + D TYNTL
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTL----------------- 178
Query: 227 IDGLYK-----NGF-VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
IDG +K GF +LE MK + + T N ++ K G++ A D
Sbjct: 179 IDGCFKWRGSTEGFRLLEEMKSRGGVEPNAV-----THNIMVKWFGKEGKINEASDAVVK 233
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++ G++PD TYN MI+GFCK G+ +A ++ +M GL+P+
Sbjct: 234 MVES-GVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPD 277
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 167/372 (44%), Gaps = 89/372 (23%)
Query: 14 ILMSCF------TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
IL++C+ PN +T +LIKGLC G++ EA + N +T+ L
Sbjct: 246 ILINCYYFKMGYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILING 305
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------------- 105
AL + ++ G + +VV + +IDGLCKD ++D
Sbjct: 306 LCKMGQTRAALQVLRQIE---GKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRI 362
Query: 106 ------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN--- 144
+ + P+V T N++ D L KDGK++EA ++ M+ +N
Sbjct: 363 PPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFT 422
Query: 145 -----PNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILINGYCKDRNVE 185
PNT +YNTL+DGF AW +G +V +YN L++ CK+ +V+
Sbjct: 423 EMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVD 482
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
A++L +GI+ D TYNTL +DGL K G + +A +F
Sbjct: 483 KAIALVNNFKDQGIQPDMHTYNTL-----------------VDGLCKQGRLKDAQLIFQD 525
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ L T N +I+GLC G L A + M++ G PDVVTY +IH ++
Sbjct: 526 LLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSK-MEDNGCIPDVVTYQTIIHALFEKD 584
Query: 306 QHQKANGLLLDM 317
++ KA L+ ++
Sbjct: 585 ENDKAEKLVREL 596
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 154/336 (45%), Gaps = 49/336 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL----------VALNLFEEM 75
F S+ G + +L R+ + + P+++ FN + L+L +M
Sbjct: 177 FRSIPNGFVVDNAVLSFNRMLQMRHT----PSIVEFNKILTYLIKTKNHYPTVLSLSTQM 232
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
++ GV KPD+ T + +I+ C + G P+ +TL + L +GK+ EA
Sbjct: 233 ESK-GV--KPDLFTLSILIN--C---YYFKMGYEPNTITLTTLIKGLCLNGKVNEALLFH 284
Query: 136 EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKD 181
+ ++ + N TY L++G K +V Y+ +I+G CKD
Sbjct: 285 DHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKD 344
Query: 182 RNVEDAVSLCREMLSEGIRADATTYN--TLF--MAINNVPPDSHVYTTYIDGLYKNGFVL 237
+ V DA L EM+ + I T+ +LF M + N+ P+ + + +D L K+G +
Sbjct: 345 KLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIK 404
Query: 238 EAMKVFSAIGNHKCVLTIE--------TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
EA V + + L E + N LIDG CK GRL AW + M++ G P
Sbjct: 405 EAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQ-MRDRGQPP 463
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V+TYN ++H CK KA L+ + ++ G++P+
Sbjct: 464 NVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPD 499
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 46/240 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK-----LNVFC---CDPNV 58
F L +++ PN+ TFN L+ LC +G+I EA + K LN+F C PN
Sbjct: 371 AFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNT 430
Query: 59 ITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------ 103
+++NTL A L ++M + P+V+T +++ LCK+ +
Sbjct: 431 VSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQ---PPNVITYNSLLHALCKNHHVDKAIAL 487
Query: 104 ----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
DQG++PD+ T N + D L K G++++A + + ++ + N T TYN +++G
Sbjct: 488 VNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCL 547
Query: 158 --------AWWSK----GCRHDVYSYNILING-YCKDRNVEDAVSLCREMLSEGIRADAT 204
SK GC DV +Y +I+ + KD N + A L RE++ R T
Sbjct: 548 EGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDEN-DKAEKLVRELIVRVFRKSPT 606
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 166/393 (42%), Gaps = 84/393 (21%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
R+ PN+ TFN +I LC EG + EA L ++ C P+V+T+N+L
Sbjct: 184 RLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCG 243
Query: 68 ALNLFEEMVNEF-GVICKPDVVTC-----------------------------------T 91
L E++V E G C+PDVVT +
Sbjct: 244 ELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFS 303
Query: 92 NIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+D CK+G + + +GM+P+ VT + D K G++++A L M+Q+
Sbjct: 304 TFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQ 363
Query: 142 DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDA 187
V N TY L+DG K G R + Y LI+G+ +N E A
Sbjct: 364 GVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERA 423
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYIDG 229
+SL EM +G+ D + Y L + N + P++ +YT +D
Sbjct: 424 LSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDA 483
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+K EA+ + + + I T L+DGLCK G + A F+ M + GL P
Sbjct: 484 CFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNK-MVDLGLEP 542
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+V Y ++ G CK G+ KA LL +M + G+
Sbjct: 543 NVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGM 575
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 129/261 (49%), Gaps = 38/261 (14%)
Query: 85 PDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
P+ TC +I+ L ++ + +Q P+V T N+M D L K+G + EA LL M
Sbjct: 161 PNTRTCNHILLCLARERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARM 220
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+P+ TYN+L+DG+ + GCR DV +YN L+N +CK +
Sbjct: 221 KAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRM 280
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E A S EM EG+ A+ T ++T++D KNG V EAMK+F+
Sbjct: 281 ERAYSYFAEMKREGVMANVVT-----------------FSTFVDAFCKNGMVREAMKLFA 323
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ T CL+DG CK GRL A + + ++Q G+ +VVTY +++ G CKE
Sbjct: 324 QMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQ-GVPLNVVTYTVLVDGLCKE 382
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G+ +A + ME G+ N
Sbjct: 383 GKVAEAEDVFRLMERAGIRAN 403
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 162/391 (41%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNL 71
P++VT+N+L+ C GR+ A F ++ NV+TF+T + A+ L
Sbjct: 262 PDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKL 321
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F +M + G+ KP+ VT T ++DG CK G M+ QG+ +VVT V+ D
Sbjct: 322 FAQMRMK-GM--KPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDG 378
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K+GK+ EA + +M + + N Y TL+ G + KG D
Sbjct: 379 LCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELD 438
Query: 168 VYSYNILINGYC-----------------------------------KDRNVEDAVSLCR 192
V Y LI G C K R +A++L +
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQ 498
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+M+ G R + TY L M + P+ YT +DGL KNG
Sbjct: 499 KMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG 558
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A+ + + + L C L+DG K G L+ A+ + M N GL D+ Y
Sbjct: 559 RLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFAL-KAKMINSGLQLDLYGY 617
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GFC Q+A +L +M E G+ P+
Sbjct: 618 TCFVWGFCNLNMIQEAREVLSEMIENGITPD 648
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 160/350 (45%), Gaps = 54/350 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR VL ++ N+VT+ L+ GLC EG++ EA +F+ + N + +
Sbjct: 348 GRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLY 407
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
TL + AL+L EM ++ + DV +I GLC +
Sbjct: 408 TTLIHGHFVYKNSERALSLLSEMKDKGMEL---DVSLYGALIWGLCNLQKLDEAKSLLNK 464
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MD+ G++P+ V + D K K EA LL+ M+ PN TY L+DG
Sbjct: 465 MDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGS 524
Query: 158 -----AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ ++K G +V +Y L++G CK+ ++ AV L EM+ +G
Sbjct: 525 IDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG---------- 574
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M+++NV V T+ +DG K G + +A + + + N L + C + G C +
Sbjct: 575 --MSLDNV-----VCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNL 627
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
++ A ++ +++N G+TPD V YN +I+ K G ++A L +ME
Sbjct: 628 NMIQEAREVLSEMIEN-GITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 85/218 (38%), Gaps = 53/218 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S LL +++ S F PN+VT+ +L+ GLC G I EA F K+ +PNV +
Sbjct: 489 KESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAY- 547
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
T ++DGLCK+G M+D+GM D
Sbjct: 548 ----------------------------TALVDGLCKNGRLDKAVLLLDEMIDKGMSLDN 579
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
V + D K G +++A L MI + + Y + GF
Sbjct: 580 VVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSE 639
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
G D YN LIN K N+E+A L EM S
Sbjct: 640 MIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMES 677
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V T + L G + +A+ + + + TCN ++ L + ++AW +F L
Sbjct: 130 VVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQL 189
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+V T+NIMI CKEG +A LL M+ G P+
Sbjct: 190 P-----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPD 228
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 156/355 (43%), Gaps = 56/355 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVI 59
G+ S L R+L F N+VT N+LI GLC G + EA RL KK+ F D I
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK--I 527
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
T+NTL CK V +G G M+ QG+ PD T N++
Sbjct: 528 TYNTL--------------ISGCCKEGKVE-----EGFKLRGEMVKQGIEPDTFTYNLLI 568
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ + GK++EA L RD+ PN TY ++DG+ ++
Sbjct: 569 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 628
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-------- 217
+ YN LI YC++ N +A L +M S+GI TY++L + N+
Sbjct: 629 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCL 688
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P+ YT I G K G + + + V + ++ T +IDG K
Sbjct: 689 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSK 748
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G +K A + H M G+ PD VTYN++ +GFCKEG+ ++ + M + GL
Sbjct: 749 SGDMKTAAKLLHE-MVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
MG + G ++ PN VT NS+I+G C G++ +A + +++ F +P
Sbjct: 364 MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGA 423
Query: 59 IT-------FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
T N+ AL EM+ +P+ T ++ GLCK+G
Sbjct: 424 FTTIIHWLCMNSRFESALRFLREMLLRN---MRPNDGLLTTLVGGLCKEGKHSDAVELWF 480
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
++++G ++VT N + L K G M+EA LL+ M++R + TYNTL+
Sbjct: 481 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 540
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GF +G D ++YN+LI+G C+ +++AV+L E S + + TY
Sbjct: 541 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 600
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ + N+ +S VY T I +NG +EA K+ + +
Sbjct: 601 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 660
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T T + LI G+C IGR++ A + M+ GL P+VV Y +I G+CK GQ K
Sbjct: 661 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDE-MRKEGLLPNVVCYTALIGGYCKLGQMDK 719
Query: 310 ANGLLLDMEETGLEPN 325
+L +M + PN
Sbjct: 720 VVNVLQEMSSYDIHPN 735
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 167/391 (42%), Gaps = 90/391 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+PN+VT+N+LI GLC G + EA R +K+ + +IT++ L + L E NE
Sbjct: 278 SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKL--EKFNEA 335
Query: 80 GVICK--------PDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDN 121
+ K P+ V +IDG CK G M+ +G+ P+ VTLN +
Sbjct: 336 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 395
Query: 122 LSKDGKMEEANCLLEVMIQ-----------------------------------RDVNPN 146
K G+ME+A C+LE M+ R++ PN
Sbjct: 396 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 455
Query: 147 TCTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
TL+ G F KG ++ + N LI+G CK N+++AV L +
Sbjct: 456 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 515
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+ML G D TYNTL M + PD+ Y I G+ + G
Sbjct: 516 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 575
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVT 293
+ EA+ +++ + V + T +IDG CK +++ +F +L QN L + V
Sbjct: 576 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN--LELNSVV 633
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YN +I +C+ G +A L DM G+ P
Sbjct: 634 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 664
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 72/348 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F++ I C G++ +A +LF + PNV+T+N
Sbjct: 243 SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYN----------------- 285
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
N+I GLCK G M+ G+ ++T +V+ + L K K
Sbjct: 286 ------------NLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFN 333
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILI 175
EAN +L+ +++ PN YNTL+DG+ SKG + + N +I
Sbjct: 334 EANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 393
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
G+CK +E A + EMLS G + + T+ M + N+
Sbjct: 394 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMR 453
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + TT + GL K G +A++++ + + T N LI GLCK G ++ A +
Sbjct: 454 PNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRL 513
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G D +TYN +I G CKEG+ ++ L +M + G+EP+
Sbjct: 514 LKKMLER-GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 560
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
PN+ T+ +I G C +I E +LF +L + N + +NTL + A
Sbjct: 592 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAF 651
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
L ++M ++ G+ P T +++I G+C G M D +G+ P+VV +
Sbjct: 652 KLHDDMRSK-GI--PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALI 708
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
K G+M++ +L+ M D++PN TY ++DG++ KG
Sbjct: 709 GGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIV 768
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D +YN+L NG+CK+ +E+ +C M EG+ D TY TL
Sbjct: 769 PDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTL 812
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 132/324 (40%), Gaps = 53/324 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV-ICKPDV 87
++ G + R+L + +KL V DP + +A +L E V E GV + D+
Sbjct: 123 IVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMA-DLNE--VGESGVAVAAVDL 179
Query: 88 ---VTCTNIIDGLCKDG-----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
V CT + ++ F+ ++G+ P V T + +L K ++E++ + E M
Sbjct: 180 LIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR 239
Query: 140 QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
Q G DVY ++ IN +CK VEDA+ L +M G+
Sbjct: 240 Q----------------------GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGV 277
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ TYN L M + V Y+ I+GL K EA
Sbjct: 278 SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANS 337
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
V N LIDG CK+G L A I M + G+ P+ VT N +I GF
Sbjct: 338 VLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI-RGDMVSKGINPNSVTLNSIIQGF 396
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK GQ ++A +L +M G N
Sbjct: 397 CKIGQMEQAECILEEMLSRGFSIN 420
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P T++SLI G+C GR+ +A L ++ PNV+ + L L +++VN
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723
Query: 79 FGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ P+ +T T +IDG K G M+ +G+ PD VT NV+T+ K
Sbjct: 724 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 783
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+GK+EE + + M Q + + TY TL+ G+ S
Sbjct: 784 EGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPS 820
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 153/341 (44%), Gaps = 53/341 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S + I P +V+FN+LI G C G + E RL ++ P+V T+
Sbjct: 254 GNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTY 313
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
+ L AL N + F +CK P+ V T +I G ++G M+
Sbjct: 314 SALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLS 373
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+G++PD+V N + + K+G + A +++ MI+R + P+ TY TL+DGF
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVET 433
Query: 161 ---------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G D ++ L+ G CK+ V DA REML GI+
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK----------- 482
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD YT +D K G K+ + + V ++ T N L++GLCK+G++
Sbjct: 483 ------PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
K A D+ M N G+ PD +TYN ++ EG H+ AN
Sbjct: 537 KNA-DMLLDAMLNIGVVPDDITYNTLL-----EGHHRHANS 571
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 156/354 (44%), Gaps = 72/354 (20%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + F N+ FN L+ C EG I +A ++F ++ P V++FNTL
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL--------- 281
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM-----RPDVVTLNVMTDNLS 123
I+G CK +GF + M RPDV T + + + L
Sbjct: 282 --------------------INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALC 321
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K+ KM+ A+ L + M +R + PN + TL+ G + SKG + D+
Sbjct: 322 KENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIV 381
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
YN L+NG+CK+ ++ A ++ M+ G+R D TY TL M
Sbjct: 382 LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N + D ++ + G+ K G V++A + + T ++D CK G
Sbjct: 442 DQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDA 501
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + MQ+ G P VVTYN++++G CK GQ + A+ LL M G+ P+
Sbjct: 502 QTGFKLLKE-MQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPD 554
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)
Query: 144 NPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
NP + ++ F + S G R V +Y +L +A SL ++S +
Sbjct: 92 NPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKN 151
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
A++ + + P + + GF+ +A++ F H+ + I C L
Sbjct: 152 SASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNL 211
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+D + K+ W F+M + + G +V +NI+++ FCKEG A + ++ +
Sbjct: 212 LDRMMKLNPTGTIWG-FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270
Query: 322 LEP 324
L+P
Sbjct: 271 LQP 273
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 45/349 (12%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++N++I GL EG + +A + ++ P+ +T+N++ AL + +
Sbjct: 9 PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
V+ P+ T +I+ G C G M G+ PDVVT N + D L K+GK
Sbjct: 69 LTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKC 128
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
EA + + M++R + P+ TY TL+ G+A G + D + +NIL
Sbjct: 129 TEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNIL 188
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I Y K V++ V + +M +G+ +A Y T+ M +
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ VYT+ I L +A ++ I + I N ++D LCK GR+ +
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L+ + G+ PDV+TY+ +I G+C G+ A LL M GL+P+
Sbjct: 309 LFD-LLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPD 356
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 130/285 (45%), Gaps = 47/285 (16%)
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C PDVV+ IIDGL K+G M+D+ + PD VT N + LSK M+ A
Sbjct: 7 CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAM 66
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+L VM+ PN TYN++M G+ S G DV +YN L++
Sbjct: 67 EVLTVMVM----PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDS 220
CK+ +A + M+ G++ D TTY TL M N + D
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
HV+ I K V E + VFS + +IDGLCK+GRL A F
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQ 242
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + GLTP+VV Y +IH C + +KA L+ ++ + G+ PN
Sbjct: 243 MI-DKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPN 286
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 159/362 (43%), Gaps = 55/362 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------- 65
+L PN T+NS++ G C+ G+ +A +F+K+ +P+V+T+N+L
Sbjct: 67 EVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNG 126
Query: 66 --LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A +F+ MV KPD+ T ++ G G M+ GM+ D
Sbjct: 127 KCTEARKIFDSMVKRG---LKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHH 183
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N++ +K K++E + M Q+ + PN Y T++DG
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
KG +V Y LI+ C E A L E+L +GI + +NT+ ++
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRV 303
Query: 214 ------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
V PD Y+T IDG G + AMK+ + + + T + L
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTL 363
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I+G CKI R++ A +F M++ G+ PD++TYNI++HG + + A L + E+G
Sbjct: 364 INGYCKINRMEDALALFKE-MESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422
Query: 322 LE 323
+
Sbjct: 423 TQ 424
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 50/285 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
++ ++ TPN V + ++I GLC GR+ +A F+++ PNV+ + +L + A
Sbjct: 203 LVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSL-IHA 261
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
L +++ +I + ++DQG+ P++V N + D+L K+G++
Sbjct: 262 LCTYDKWEKAEELIFE------------------ILDQGINPNIVFFNTILDSLCKEGRV 303
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
E+ L +++ VNP+ TY+TL+DG+ K G + D +Y+ L
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTL 363
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
INGYCK +EDA++L +EM S G+ D TYN + + GL++
Sbjct: 364 INGYCKINRMEDALALFKEMESNGVNPDIITYNII-----------------LHGLFRTR 406
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
A ++++ I L + T N ++ K L + + F
Sbjct: 407 RTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHFGCFR 451
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G LL ++ P+ VT+++LI G C R+ +A LFK++ +P++IT+
Sbjct: 336 GKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITY 395
Query: 62 NTL 64
N +
Sbjct: 396 NII 398
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 176/370 (47%), Gaps = 52/370 (14%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G LLG + S PN++ ++ L++G C GR + +++F++++ +P+VI F
Sbjct: 168 GALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFI 227
Query: 66 --LVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L + V ++ + P+VVT +I+ LCK+G M D+G+
Sbjct: 228 DDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVA 287
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGF---------- 157
PDVVT N + LS +M+ A LLE MIQ D V P+ T+N+++ G
Sbjct: 288 PDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAI 347
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+GC ++ +YN LI G+ + V A++L E++S G+ D+ TY+ L
Sbjct: 348 SVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGF 407
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + + Y + L + G + +AM +F+ + + C L
Sbjct: 408 SKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEM-DMNCGLDA 466
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ ++ G CK G +K A + ++ + GL PD VTY+I+I+ F K G ++A +L
Sbjct: 467 VAYSTMMYGACKSGDIKAAKQLLQDML-DEGLAPDAVTYSILINMFAKLGDLEEAERVLK 525
Query: 316 DMEETGLEPN 325
M +G P+
Sbjct: 526 QMAASGFVPD 535
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 155/339 (45%), Gaps = 58/339 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEEM 75
PN V++ +++GLC R EA L + + +V+T+ TL L+ E+
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALEL 172
Query: 76 VNEF-GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
+ E G P+V+ + ++ G C+ G D G+ PDV+ D+L K
Sbjct: 173 LGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCK 232
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G++ +A + ++M+QR + PN TYN +LIN CK+ +V
Sbjct: 233 KGRIGKAVKVKDIMVQRGLEPNVVTYN---------------------VLINCLCKEGSV 271
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINN--------------------VPPDSHVYT 224
+A++L EM +G+ D TYNTL ++ V PD +
Sbjct: 272 REALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFN 331
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ I GL K G + +A+ V + C+ + T N LI G ++ ++ +A ++ L+ +
Sbjct: 332 SVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISS 391
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GL PD TY+I+I+GF K + +A L M + G+
Sbjct: 392 -GLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIR 429
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 169/377 (44%), Gaps = 60/377 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LL + S ++VT+ +LI+GLC + A L ++ PNVI ++
Sbjct: 130 RTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYS 189
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
L +FEEM + GV +PDV+ T ID LCK G M
Sbjct: 190 CLLRGYCRSGRWQDVSKVFEEM-SRLGV--EPDVIMFTGFIDDLCKKGRIGKAVKVKDIM 246
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+ +G+ P+VVT NV+ + L K+G + EA L M + V P+ TYNTL+ G +
Sbjct: 247 VQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEM 306
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTY 206
DV ++N +I+G CK + A+S+ REM++E G + TY
Sbjct: 307 DGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISV-REMMAERGCMCNLVTY 365
Query: 207 NTLF----------MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N L MA+N + PDS Y+ I+G K V A +
Sbjct: 366 NYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQ 425
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ L+ LC++G ++ A +F+ + N GL D V Y+ M++G CK G +
Sbjct: 426 RGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGL--DAVAYSTMMYGACKSGDIK 483
Query: 309 KANGLLLDMEETGLEPN 325
A LL DM + GL P+
Sbjct: 484 AAKQLLQDMLDEGLAPD 500
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 155/350 (44%), Gaps = 56/350 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+++ F I LC +GRI +A ++ + +PNV+T+N L AL L
Sbjct: 218 PDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALAL 277
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFM-----MDQG---MRPDVVTLNVMT 119
EM ++ GV PDVVT +I GL DG M M QG + PDVVT N +
Sbjct: 278 RNEM-DDKGV--APDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVI 334
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L K G+M +A + E+M +R N TYN L+ GF S G
Sbjct: 335 HGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLE 394
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D ++Y+ILING+ K V+ A R M GIRA+ Y L A+
Sbjct: 395 PDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVL 454
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
N D+ Y+T + G K+G + A ++ + + T + LI+ K+
Sbjct: 455 FNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKL 514
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
G L+ A + M G PDV ++ +I G+ EGQ K L+ +M
Sbjct: 515 GDLEEAERVLKQ-MAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMR 563
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 38/234 (16%)
Query: 111 DVVTLNVMTDNL-SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
D V+ N++ L + G + +A LL M R+ +P R +
Sbjct: 75 DAVSYNIVLAALCRRGGDLRQALSLLADM-SREAHP-----------------AARPNAV 116
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
SY +++ G C R ++AV+L R M + G+RAD TY TL +
Sbjct: 117 SYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEM 176
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ V P+ VY+ + G ++G + KVF + + ID LCK GR+
Sbjct: 177 CGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRI 236
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + +++Q GL P+VVTYN++I+ CKEG ++A L +M++ G+ P+
Sbjct: 237 GKAVKVKDIMVQR-GLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPD 289
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 48/270 (17%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGM--------------RPDVVTLNVMTDNLSKDGKMEEA 131
D V+ ++ LC+ G + Q + RP+ V+ ++ L + +EA
Sbjct: 75 DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILING 177
LL M V + TY TL+ G ++ G +V Y+ L+ G
Sbjct: 135 VALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRG 194
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
YC+ +D + EM G V PD ++T +ID L K G +
Sbjct: 195 YCRSGRWQDVSKVFEEMSRLG-----------------VEPDVIMFTGFIDDLCKKGRIG 237
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A+KV + + T N LI+ LCK G ++ A + + M + G+ PDVVTYN +
Sbjct: 238 KAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNE-MDDKGVAPDVVTYNTL 296
Query: 298 IHGFCKEGQHQKANGLLLDM--EETGLEPN 325
I G + A GLL +M +T +EP+
Sbjct: 297 IAGLSGVLEMDGAMGLLEEMIQGDTLVEPD 326
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 20/187 (10%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ ++ S P+ T++ LI G + A + + + + L AL
Sbjct: 384 LMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALC 443
Query: 68 ALNLFEE---MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
L + E+ + NE + C D V + ++ G CK G M+D+G+ PD VT
Sbjct: 444 QLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVT 503
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-----HDVY 169
+++ + +K G +EEA +L+ M P+ +++L+ G++ + + H++
Sbjct: 504 YSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMR 563
Query: 170 SYNILIN 176
+ N+ I+
Sbjct: 564 AKNVAID 570
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 54/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----- 67
R+ F+P++VT+N +I LC+ G++ A + +L C P+VIT+ L
Sbjct: 156 RMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEG 215
Query: 68 ----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
AL LF+E+V+ G+ +PD+ T II G+CK+G + +G PDVV
Sbjct: 216 RINEALELFDELVSR-GL--RPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVV 272
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
+ N++ + + E+ L++ M+ PN T++ L+ F
Sbjct: 273 SYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVM 332
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
KG D YSY+ LI+ +CK+ ++ A+ +M+S+G D YNT+
Sbjct: 333 KEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILAT------- 385
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
L K G A+ VF + C T+ N + L G A ++
Sbjct: 386 ----------LCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMIS 435
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+++ G+ PD +TYN +I C++G +A GLL+DME T +P
Sbjct: 436 EMIRK-GIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQP 479
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 147/338 (43%), Gaps = 52/338 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ F P++V LIKG + +A R+ + L + DP+V ++
Sbjct: 76 GKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSY 134
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N M++ F + D + + D M +G PDVVT N+M +
Sbjct: 135 NA-----------MISGFSKANQID--SANQVFDR------MRSRGFSPDVVTYNIMIGS 175
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L GK+E A +++ +++ P+ TY L++ S+G R D
Sbjct: 176 LCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD 235
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y+YN +I G CK+ + A+ R + + G D +YN L + N
Sbjct: 236 LYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLN------------ 283
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+++G L V S C + T + LI C+ GR++ A ++ +M+ GL
Sbjct: 284 KSRWEDGERLMKDMVLSG-----CEPNVVTHSILISSFCREGRVREAVNVLE-VMKEKGL 337
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPD +Y+ +I FCKEG+ A L M G P+
Sbjct: 338 TPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPD 375
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 60/264 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L + TP+ +++ LI C EGR+ A +K+ C P+++ +
Sbjct: 320 GRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNY 379
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVV----------TCTNIIDGLCKDGF 102
NT+ A +AL++FE++ +E G C P V +C N I L
Sbjct: 380 NTILATLCKFGCADLALDVFEKL-DEVG--CPPTVRAYNTMFSALWSCGNKIKALEMISE 436
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G+ PD +T N + L +DG ++EA LL M P
Sbjct: 437 MIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPT---------------- 480
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V S+NI++ G CK V + + L M+ +G + T+Y L
Sbjct: 481 -----VISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLL------------- 522
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAI 246
I+G+ G+ EAM++ +++
Sbjct: 523 ----IEGIAYAGWRAEAMELANSL 542
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 163/349 (46%), Gaps = 46/349 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+N L+K LC R+ A +L +++ CDP+ +++ TL +L L +E E
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKE-ARE 237
Query: 79 FGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ P V +I+G+CK + F MM++G+ P+V++ + + LS G +
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH----DVYSYNIL 174
E + +L M R +PN T+ +L+ GF +W + R +V +YN L
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
++G C R++ DAVS+ +M G + TY+ L +M +
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ YT +D L +N +A + + C T N I GLC GR+ A
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M N G P+ TYN ++ K+ + +A GL+ DME G+E N
Sbjct: 478 VFDQ-MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELN 525
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 149/354 (42%), Gaps = 48/354 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +L ++ +PN+ TF SLIKG +G EA + ++ PNV+ +
Sbjct: 295 GNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAY 354
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMD 105
N L L + + V+ F + C P+V T + +IDG K G +M+
Sbjct: 355 NALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMIT 414
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------W 159
G P+VV M D L ++ +A CL+E M + PNT T+NT + G W
Sbjct: 415 HGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474
Query: 160 WSK--------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
K GC + +YN L++ KDR +A L ++M GI + TYNT+
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTI-- 532
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I G G + EA+++ + T N +ID CK G++
Sbjct: 533 ---------------IYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKV 577
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IA + L PD++ Y +I G C ++A L M G+ PN
Sbjct: 578 NIAIQLMDRLSAGK-WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 51/326 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
R++ PN+V +N+L+ GLC++ + +A +F ++ + C PNV T++ L
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 68 ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
L+ E+ N C P+VV T ++D LC++ M + P+ VT N
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFAWW------SK 162
L G+++ A + + M PNT TYN L+D G A+ +
Sbjct: 461 TFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHR 520
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G ++ +YN +I GYC + +A+ L +M+ G + DA T N +
Sbjct: 521 GIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIV------------- 567
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-KIGRLKIAWDIFHML 281
ID K G V A+++ + K I LI G+C IG + + ML
Sbjct: 568 ----IDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRML 623
Query: 282 MQNPGLTPDVVTYNIMI-HGFCKEGQ 306
+ G++P+V T+N+++ H F G
Sbjct: 624 SE--GISPNVATWNVLVRHLFSNMGH 647
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M D ++P V N + D L + + + N + M + + PN
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPN---------------- 180
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V++YNIL+ CK+ V+ A L EM S+G PD
Sbjct: 181 -----VFTYNILLKALCKNNRVDGAHKLLVEMSSKG-----------------CDPDEVS 218
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YTT I L K G V EA ++ + ++ N LI+G+CK + A+ + +M
Sbjct: 219 YTTLISSLCKLGKVKEARELAMSF-----TPSVPVYNALINGVCKEYTFEEAFQLLDEMM 273
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G+ P+V++Y +I+ G + + +L M G PN
Sbjct: 274 -NKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPN 315
>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
Length = 388
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 166/366 (45%), Gaps = 64/366 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
IL PN+V FNS++ G G + A + + C+P+ +T+NTL V
Sbjct: 2 ILGGAVAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLER 61
Query: 68 ---ALNLFEEMVNEFGVICKPDVV--TCTNIIDGLCKD----------GFMMDQGMRPDV 112
A L E+M + G+ +P V+ T N+I C+ M+D G +PDV
Sbjct: 62 FDSARELLEQMWDS-GI--RPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDV 118
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
VT N + L K+ A+ L++M + + PNT TYNT+++G W S+
Sbjct: 119 VTYNTLISGLC---KLRRADDALQLMREMEPAPNTITYNTVINGL-WRSRKDTEAQALLD 174
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
GC V +YN +I C+ R +E AV + M + AD T+ TL
Sbjct: 175 EMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDK 234
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+MA +P D YT ++ L G +A ++F+ + + T+ + N
Sbjct: 235 RLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYN 294
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
L+ GLCK R++ A +F MQ + PDVV+Y +I G C + +A L D
Sbjct: 295 VLLKGLCKALRVEHALVLFRE-MQEREIQPDVVSYTTVIKGLCAARRIDEAIDLFRD--P 351
Query: 320 TGLEPN 325
+ LEPN
Sbjct: 352 SFLEPN 357
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/409 (28%), Positives = 170/409 (41%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L R+L + PN + +N+LI LC G + EA K++ C PNV+++
Sbjct: 43 GSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCA-PNVVSY 101
Query: 62 NTL------------ALVALNLFEEM------------VNEF-----------------G 80
N + AL L EE+ V F
Sbjct: 102 NIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPA 161
Query: 81 VICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
C+PD+V ++ GL ++ F M +G +PDVVT N M L K K++E
Sbjct: 162 KGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDE 221
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------GCRHDVYSYNIL 174
A LLE M Q DV+P TY TL+D +++ C YS IL
Sbjct: 222 AVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLIL 281
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-----------------FMAINNVP 217
ING CK R +A + +EM GI TYNTL + ++ VP
Sbjct: 282 INGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVP 341
Query: 218 -PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y I L K V EA K+ SA+ + V +++ L+ L + GRL A++
Sbjct: 342 APNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 401
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ M V + NI++ G + G +A L M +TG+ P+
Sbjct: 402 LYKE-MSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPD 449
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------- 154
M G PDV + ++ K G + L+ M++ + PN YN L+
Sbjct: 20 MKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGM 79
Query: 155 --DGFAWWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ ++ + +H +V SYNI+I+GYCK RN+E A++ REM G
Sbjct: 80 LAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG----------- 128
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PP H Y++ + K G V +AM VF+ + C I N L+ GL +
Sbjct: 129 ------HPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRAR 182
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A ++F M + G PDVVTYN MI G CK + +A LL M++ + P
Sbjct: 183 KIHEARELFRS-MNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPT 237
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL R+ +P VT+ +LI LC R+ +A +F+K+ C ++ L L+
Sbjct: 225 LLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILING 284
Query: 68 ---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
A +F+EM G P VVT +++GL FM+DQ
Sbjct: 285 LCKARRPGEAKEMFQEMR---GRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVP 341
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFA 158
P++ T ++ +L K ++EEA LL M + P+ + L+ D F
Sbjct: 342 APNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 401
Query: 159 WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ + C+ V S NIL++G + +V++A ++M GI D TY+ L + +
Sbjct: 402 LYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGL 460
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P +VT+N+L++GL + ++ +A L + PN+ T+ L +L + EE
Sbjct: 307 SPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFK 366
Query: 78 EFGVICKPDVVTCTNIID---------GLCKDGFMMDQGM-----RPDVVTLNVMTDNLS 123
+ V I + G D F + + M + V + N++ D +
Sbjct: 367 LLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGIL 426
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G ++EA L+ M + P+ TY+ L+ G W K
Sbjct: 427 RRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKA 466
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 167/376 (44%), Gaps = 90/376 (23%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ N + LC R+ +A ++ +K+ + P+V+T+ T+ A
Sbjct: 261 CF-PDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEA 319
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------------------------- 100
+ L+EEMV G+ KPDVV C +I GLCK+
Sbjct: 320 VGLWEEMVRR-GL--KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNAL 376
Query: 101 -----------------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
FM G PDVVT N++ ++ G ++A L+ M V
Sbjct: 377 ISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGV 436
Query: 144 NPNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVS 189
NP+ +YN L+ G FA+ S G D+ S NILI+ +C+ + V A++
Sbjct: 437 NPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALN 496
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +EM +GI+ADA TY L I+GL+ G+ A ++F + N
Sbjct: 497 LFKEMGYKGIQADAVTYGIL-----------------INGLFGIGYSNLAEELFDQMLNT 539
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K V + N ++ LCK+G K A IF + Q ++PD VT+N +I+ K + +
Sbjct: 540 KIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKE-VSPDTVTFNTLIYWLGKSSRAVE 598
Query: 310 ANGLLLDMEETGLEPN 325
A L +M G+EP+
Sbjct: 599 ALDLFKEMRTKGVEPD 614
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
T MD F GC D ++ NI ++ C + DA+ + +M +G D TY T+
Sbjct: 254 TDMDKF-----GCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVS 308
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + PD I GL KN V EA ++ S + L
Sbjct: 309 CLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQL 368
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N LI G + G ++ A+ MQ G PDVVTYNI+++ +C G KA L
Sbjct: 369 NVSIYNALISGFWRAGSIEKAYKTVS-FMQRNGCEPDVVTYNILLNHYCSIGMTDKAENL 427
Query: 314 LLDMEETGLEPN 325
+ ME +G+ P+
Sbjct: 428 IRKMEMSGVNPD 439
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 44/248 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK---KLNVFC----CDPNVITFN 62
L+ ++ MS P+ ++N L+KGLC ++ +A ++ FC C+ + F
Sbjct: 427 LIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFC 486
Query: 63 TLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
V ALNLF+EM + G+ + D VT +I+GL G+ M++ + P
Sbjct: 487 RAKKVNSALNLFKEMGYK-GI--QADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVP 543
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V N+M NL K G + A + M Q++V+P+T T+NTL+ W K R
Sbjct: 544 NVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLI---YWLGKSSR----- 595
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+A+ L +EM ++G+ D T+ + + + + Y + + +
Sbjct: 596 -------------AVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIW-EYM 641
Query: 231 YKNGFVLE 238
+NG +L+
Sbjct: 642 MENGIILD 649
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-MAINNVPPD 219
S+G Y +L+ GY + + + EM++ G R YN + I N D
Sbjct: 153 SQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFD 212
Query: 220 -----------------SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
Y+ +I L ++ + ++ + + C CN +
Sbjct: 213 LVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYV 272
Query: 263 DGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LC RL +D M+ M G PDVVTY ++ C + +A GL +M
Sbjct: 273 HYLCGHNRL---YDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRR 329
Query: 321 GLEPN 325
GL+P+
Sbjct: 330 GLKPD 334
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 167/376 (44%), Gaps = 90/376 (23%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ N + LC R+ +A ++ +K+ + P+V+T+ T+ A
Sbjct: 261 CF-PDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEA 319
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------------------------- 100
+ L+EEMV G+ KPDVV C +I GLCK+
Sbjct: 320 VGLWEEMVRR-GL--KPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNAL 376
Query: 101 -----------------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
FM G PDVVT N++ ++ G ++A L+ M V
Sbjct: 377 ISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGV 436
Query: 144 NPNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVS 189
NP+ +YN L+ G FA+ S G D+ S NILI+ +C+ + V A++
Sbjct: 437 NPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALN 496
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +EM +GI+ADA TY L I+GL+ G+ A ++F + N
Sbjct: 497 LFKEMGYKGIQADAVTYGIL-----------------INGLFGIGYSNLAEELFDQMLNT 539
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K V + N ++ LCK+G K A IF + Q ++PD VT+N +I+ K + +
Sbjct: 540 KIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKE-VSPDTVTFNTLIYWLGKSSRAVE 598
Query: 310 ANGLLLDMEETGLEPN 325
A L +M G+EP+
Sbjct: 599 ALDLFKEMRTKGVEPD 614
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 24/192 (12%)
Query: 152 TLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
T MD F GC D ++ NI ++ C + DA+ + +M +G D TY T+
Sbjct: 254 TDMDKF-----GCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVS 308
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + PD I GL KN V EA ++ S + L
Sbjct: 309 CLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQL 368
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ N LI G + G ++ A+ MQ G PDVVTYNI+++ +C G KA L
Sbjct: 369 NVSIYNALISGFWRAGSIEKAYKTVS-FMQRNGCEPDVVTYNILLNHYCSIGMTDKAENL 427
Query: 314 LLDMEETGLEPN 325
+ ME +G+ P+
Sbjct: 428 IRKMEMSGVNPD 439
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 44/248 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK---KLNVFC----CDPNVITFN 62
L+ ++ MS P+ ++N L+KGLC ++ +A ++ FC C+ + F
Sbjct: 427 LIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFC 486
Query: 63 TLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
V ALNLF+EM + G+ + D VT +I+GL G+ M++ + P
Sbjct: 487 RAKKVNSALNLFKEMGYK-GI--QADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVP 543
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V N+M NL K G + A + M Q++V+P+T T+NTL+ W K R
Sbjct: 544 NVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLI---YWLGKSSR----- 595
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+A+ L +EM ++G+ D T+ + + + + Y + + +
Sbjct: 596 -------------AVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEIW-EYM 641
Query: 231 YKNGFVLE 238
+NG +L+
Sbjct: 642 MENGIILD 649
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-MAINNVPPD 219
S+G Y +L+ GY + + + EM++ G R YN + I N D
Sbjct: 153 SQGVAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFD 212
Query: 220 -----------------SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
Y+ +I L ++ + ++ + + C CN +
Sbjct: 213 LVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYV 272
Query: 263 DGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LC RL +D M+ M G PDVVTY ++ C + +A GL +M
Sbjct: 273 HYLCGHNRL---YDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRR 329
Query: 321 GLEPN 325
GL+P+
Sbjct: 330 GLKPD 334
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 163/349 (46%), Gaps = 46/349 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+N L+K LC R+ A +L +++ CDP+ +++ TL +L L +E E
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKE-ARE 237
Query: 79 FGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ P V +I+G+CK + F MM++G+ P+V++ + + LS G +
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNV 297
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH----DVYSYNIL 174
E + +L M R +PN T+ +L+ GF +W + R +V +YN L
Sbjct: 298 ELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNAL 357
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
++G C R++ DAVS+ +M G + TY+ L +M +
Sbjct: 358 MHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGC 417
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ YT +D L +N +A + + C T N I GLC GR+ A
Sbjct: 418 HPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIK 477
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M N G P+ TYN ++ K+ + +A GL+ DME G+E N
Sbjct: 478 VFDQ-MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELN 525
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 149/354 (42%), Gaps = 48/354 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +L ++ +PN+ TF SLIKG +G EA + ++ PNV+ +
Sbjct: 295 GNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAY 354
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMD 105
N L L + + V+ F + C P+V T + +IDG K G +M+
Sbjct: 355 NALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMIT 414
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------W 159
G P+VV M D L ++ +A CL+E M + PNT T+NT + G W
Sbjct: 415 HGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDW 474
Query: 160 WSK--------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
K GC + +YN L++ KDR +A L ++M GI + TYNT+
Sbjct: 475 AIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTI-- 532
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I G G + EA+++ + T N +ID CK G++
Sbjct: 533 ---------------IYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKV 577
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IA + L PD++ Y +I G C ++A L M G+ PN
Sbjct: 578 NIAIQLMDRLSAGK-WHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 48/341 (14%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
R++ PN+V +N+L+ GLC++ + +A +F ++ + C PNV T++ L
Sbjct: 341 RMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAG 400
Query: 68 ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
L+ E+ N C P+VV T ++D LC++ M + P+ VT N
Sbjct: 401 DLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFN 460
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFAWW------SK 162
L G+++ A + + M PNT TYN L+D G A+ +
Sbjct: 461 TFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHR 520
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G ++ +YN +I GYC + +A+ L +M+ G + DA T N +
Sbjct: 521 GIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIV------------- 567
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
ID K G V A+++ + K I LI G+C ++ A ++ M
Sbjct: 568 ----IDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAI-VYLRRM 622
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ G++P+V T+N+++ H A L + +G E
Sbjct: 623 LSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSGFE 663
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M D ++P V N + D L + + + N + M + + PN
Sbjct: 137 MQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPN---------------- 180
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V++YNIL+ CK+ V+ A L EM S+G PD
Sbjct: 181 -----VFTYNILLKALCKNNRVDGAHKLLVEMSSKG-----------------CDPDEVS 218
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YTT I L K G V EA ++ + ++ N LI+G+CK + A+ + +M
Sbjct: 219 YTTLISSLCKLGKVKEARELAMSF-----TPSVPVYNALINGVCKEYTFEEAFQLLDEMM 273
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G+ P+V++Y +I+ G + + +L M G PN
Sbjct: 274 -NKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPN 315
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 169/353 (47%), Gaps = 58/353 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
+ +N+++ G C G++ A RL ++ V +P+ T+NTL AL + +E
Sbjct: 1 MAYNAMVAGYCGAGQLDAARRLVAEMPV---EPDAYTYNTLIRGLCGRGRTANALAVLDE 57
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTDNLSK 124
M+ C PDVVT T +++ CK G+ M D+G PD+VT NV+ + + +
Sbjct: 58 MLRRR---CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 114
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVYS 170
+G++++A L+ + PNT +YN ++ G W KGC +V +
Sbjct: 115 EGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 174
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMA 212
+N+LI+ C+ VE A+ + ++ G ++ +YN L M
Sbjct: 175 FNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 234
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD Y T + L ++G V A+++ + + C + + N +IDGL K G+ K
Sbjct: 235 SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTK 294
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ + ++ GL PD++TY+ + G C+E + + A +++ G+ PN
Sbjct: 295 EALELLNEMVSK-GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPN 346
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 48/325 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF---EE 74
TP++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L + EE
Sbjct: 99 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 158
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLS 123
++ E G C P+VVT +I LC+ G +++Q G P+ ++ N +
Sbjct: 159 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 218
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K KM++A L++M+ R P+ +YNTL+ KGC +
Sbjct: 219 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 278
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYN +I+G K ++A+ L EM+S+G++ D TY+T+ G
Sbjct: 279 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA-----------------G 321
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + + +A++ F + + N +I GLCK A D+F ++ N G P
Sbjct: 322 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMP 380
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLL 314
+ TY I+I G EG ++A LL
Sbjct: 381 NESTYTILIEGLAYEGLIKEARDLL 405
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 53/270 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L+G + PN+VTFN LI LC +G + A + +++ + C PN +++N L
Sbjct: 159 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 218
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ + MV+ C PD+V+ ++ LC+ G + D+G P
Sbjct: 219 KQKKMDKAMAFLDLMVSRG---CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 275
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+++ N + D L+K GK +EA LL M+ + + P+ TY+T+ G +
Sbjct: 276 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 335
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G R + YN +I G CK R A+ L M+ G
Sbjct: 336 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM---------------- 379
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I+GL G + EA + +
Sbjct: 380 -PNESTYTILIEGLAYEGLIKEARDLLDEL 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T++++ GLC E RI +A R F K+ PN + +
Sbjct: 291 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 350
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
N + L A++LF M+ G C P+ T T +I+GL +G + +
Sbjct: 351 NAIILGLCKRRETHSAIDLFAYMI---GNGCMPNESTYTILIEGLAYEGLIKE 400
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 161/338 (47%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+N+LI+GLC GR A + ++ C P+V+T+ L A+ L
Sbjct: 156 PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 215
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
+EM ++ C PD+VT +++G+C++G + D G P+ V+ N++
Sbjct: 216 LDEMRDKG---CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 272
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----GFAWWS---------KGCRHD 167
L + E+A L+ M Q+ PN T+N L+ G + GC +
Sbjct: 273 LCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPN 332
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
SYN L++ +CK + ++ A++ M+S G D +YNTL A
Sbjct: 333 SLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA--------------- 377
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L ++G V A+++ + + C + + N +IDGL K G+ K A ++ + M + GL
Sbjct: 378 --LCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE-MVSKGL 434
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD++TY+ + G C+E + + A +++ G+ PN
Sbjct: 435 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPN 472
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 48/333 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF---EE 74
TP++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L + EE
Sbjct: 225 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 284
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLS 123
++ E G C P+VVT +I LC+ G +++Q G P+ ++ N +
Sbjct: 285 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 344
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K KM++A L++M+ R P+ +YNTL+ KGC +
Sbjct: 345 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 404
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYN +I+G K ++A+ L EM+S+G++ D TY+T+ G
Sbjct: 405 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA-----------------G 447
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + + +A++ F + + N +I GLCK A D+F ++ N G P
Sbjct: 448 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMP 506
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ TY I+I G EG ++A LL ++ G+
Sbjct: 507 NESTYTILIEGLAYEGLIKEARDLLDELCSRGV 539
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 59/362 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---- 68
R++ S P+ T +LIK L GR EA R+ C P+V+ +N A+VA
Sbjct: 86 RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYN--AMVAGYCG 138
Query: 69 ---LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQGMR----PDVVTL 115
L+ +V E V +PD T +I GLC G ++D+ +R PDVVT
Sbjct: 139 AGQLDAARRLVAEMPV--EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTY 196
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
++ + K ++A LL+ M + P+ TYN +++G +
Sbjct: 197 TILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS 256
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------ 209
GC + SYNI++ G C EDA L EM +G + T+N L
Sbjct: 257 YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEP 316
Query: 210 -FMAINNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ +P P+S Y + K + +AM + + C I + N L+
Sbjct: 317 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLT 376
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ G + +A ++ H L ++ G P +++YN +I G K G+ ++A LL +M GL+
Sbjct: 377 ALCRSGEVDVAVELLHQL-KDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 435
Query: 324 PN 325
P+
Sbjct: 436 PD 437
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 53/263 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L+G + PN+VTFN LI LC +G + A + +++ + C PN +++N L
Sbjct: 285 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 344
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ + MV+ C PD+V+ ++ LC+ G + D+G P
Sbjct: 345 KQKKMDKAMAFLDLMVSRG---CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 401
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+++ N + D L+K GK +EA LL M+ + + P+ TY+T+ G +
Sbjct: 402 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 461
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G R + YN +I G CK R A+ L +M N
Sbjct: 462 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDL-----------------FAYMIGNGC 504
Query: 217 PPDSHVYTTYIDGLYKNGFVLEA 239
P+ YT I+GL G + EA
Sbjct: 505 MPNESTYTILIEGLAYEGLIKEA 527
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 122/298 (40%), Gaps = 41/298 (13%)
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLNVMT 119
+LV +E + G +PD TC +I L G + PDV+ N M
Sbjct: 74 SLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMV 133
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
G+++ A L+ M V P+ TYNTL+ G + C
Sbjct: 134 AGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCV 190
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
DV +Y IL+ CK + A+ L EM +G D TYN + I
Sbjct: 191 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 250
Query: 214 -NNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N+P P++ Y + GL +A ++ +G C + T N LI LC+
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A ++ + + G TP+ ++YN ++H FCK+ + KA L M G P+
Sbjct: 311 KGLVEPALEVLEQIPKY-GCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD 367
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T++++ GLC E RI +A R F K+ PN + +
Sbjct: 417 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 476
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
N + L A++LF M+ G C P+ T T +I+GL +G + +
Sbjct: 477 NAIILGLCKRRETHSAIDLFAYMI---GNGCMPNESTYTILIEGLAYEGLIKE 526
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 161/358 (44%), Gaps = 55/358 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + +P+ V +N LI GLC +G + +L + + C PN +T+N
Sbjct: 237 RIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYN 296
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
TL A++L E MV+ C P+ VT +I+GL K MD
Sbjct: 297 TLIHGLCLKGKLDKAVSLLERMVSS---KCIPNDVTYGTLINGLVKQRRAMDGARLLISM 353
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G R + +V+ L K+GK EEA L + M ++ PN Y+ ++DG
Sbjct: 354 EERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKP 413
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S GC +VY+Y+ L+ G+ K E+A+ + REM G + Y+ L
Sbjct: 414 NEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVL 473
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL G V EAM V+S + + +I GLC IG
Sbjct: 474 -----------------IDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIG 516
Query: 270 RLKIAWDIFHMLM--QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++H ++ + P PDVVTYNI++ G C + +A LL M + G +P+
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPD 574
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 165/361 (45%), Gaps = 58/361 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+PN ++FN +IK LC G + A +F+ + C P+ T+ TL A+
Sbjct: 183 ISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM +E C P V +IDGLCK G M +G P+ VT N +
Sbjct: 243 LLLDEMQSEG---CSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLI 299
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L GK+++A LLE M+ PN TY TL++G + +G R
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYR 359
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ + Y++LI+G K+ E+A++L ++M +G R + Y+ +
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEI 419
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+ + Y++ + G +K G EA++V+ + C + LIDGLC
Sbjct: 420 LNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCG 479
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM---EETGLEP 324
+GR+K A ++ ++ G+ PD V Y+ MI G C G A L +M EE +P
Sbjct: 480 VGRVKEAMMVWSKML-TIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538
Query: 325 N 325
+
Sbjct: 539 D 539
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 64/334 (19%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------A 65
L CF PN VT+N+LI GLC +G++ +A L +++ C PN +T+ TL A
Sbjct: 285 LKGCF-PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRA 343
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL 115
+ L M E G + + +I GL K+G M ++G RP++V
Sbjct: 344 MDGARLLISM-EERGYRLNQHIYSV--LISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVY 400
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK--- 162
+ + D L ++GK EA +L MI PN TY++LM GF W +
Sbjct: 401 SAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDE 460
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC + + Y++LI+G C V++A+ + +ML+ GI+ PD+
Sbjct: 461 TGCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK-----------------PDTV 503
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAI---GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
Y++ I GL G + A+K++ + K + T N L+DGLC + A D+
Sbjct: 504 AYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLL 563
Query: 279 HMLMQNPGLTPDVVTYNIMIHGF------CKEGQ 306
+ ++ G PDV+T N ++ C+EG+
Sbjct: 564 NCMLDR-GCDPDVITCNTFLNTLSEKSDSCEEGR 596
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 60/292 (20%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------------MDQGMRPDVV 113
A++LF MV+EF CK V + ++++ + +G M+ + P+ +
Sbjct: 131 AVDLFHRMVDEFR--CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGL 188
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ N++ L K G ++ A + M ++ P+ TY TLMDG
Sbjct: 189 SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGL---------------- 232
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
CK+ +++AV L EM SEG YN L M +
Sbjct: 233 -----CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKG 287
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y T I GL G + +A+ + + + KC+ T LI+GL K R A
Sbjct: 288 CFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR---AM 344
Query: 276 DIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D +L M+ G + Y+++I G KEG+ ++A L M E G PN
Sbjct: 345 DGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPN 396
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 40/228 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A L ++ PN+V ++++I GLC EG+ EA + + C PNV T+
Sbjct: 376 GKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTY 435
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
++ L+ A+ ++ EM +E G C + + +IDGLC G
Sbjct: 436 SSLMKGFFKTGLSEEAIQVWREM-DETG--CSRNEFCYSVLIDGLCGVGRVKEAMMVWSK 492
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G++PD V + M L G M+ A L M+ ++ P +
Sbjct: 493 MLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQE-EPKS--------------- 536
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ DV +YNIL++G C ++V AV L ML G D T NT
Sbjct: 537 --QPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFL 582
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 46/206 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ ++L P+ V ++S+IKGLC G +
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSM--------------------- 518
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--KD--------GFMMDQGMRP 110
AL L+ EM+ + +PDVVT ++DGLC KD M+D+G P
Sbjct: 519 -----DAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDP 573
Query: 111 DVVTLNVMTDNLS-KDGKMEEANCLLEVMI----QRDVNPNTCTYNTLMDGFAWWSKGCR 165
DV+T N + LS K EE LE ++ +R C +M G K
Sbjct: 574 DVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKRQRVSGACKIVEVMLG-----KYLA 628
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLC 191
++ +++ CK + + A++ C
Sbjct: 629 PKTSTWAMIVPEICKPKKINAAINKC 654
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 169/385 (43%), Gaps = 70/385 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
LL + + N++++NS+I GLC +GR+ E L +++ P+ +T+NTL
Sbjct: 261 AMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVN 320
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
L L EMV G P+VVT T +I+ +CK G M +G
Sbjct: 321 GFCKEGNLHQGLVLLSEMV---GKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRG 377
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW------- 160
+RP+ T + D + G M EA +L MI +P+ TYN L+ G+ +
Sbjct: 378 LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAV 437
Query: 161 -------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G DV SY+ +I G+C++R + A + EM+ +G+ D TY++L +
Sbjct: 438 GILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497
Query: 214 ------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+PPD YT+ I+ +G + +A+++ + +
Sbjct: 498 CLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDN 557
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH---------------G 300
T + LI+GL K R K+A + L + PD VTYN +I G
Sbjct: 558 VTYSVLINGLNKKARTKVAKRLLLKLFYEESV-PDDVTYNTLIENCSNNEFKSVEGLVKG 616
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FC +G +A+ + M + +PN
Sbjct: 617 FCMKGLMNEADRVFKTMLQRNHKPN 641
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 158/348 (45%), Gaps = 61/348 (17%)
Query: 18 CFTP--NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV------ 67
C +P + F+ ++K L G + +A L N P V+++N + AL+
Sbjct: 125 CSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSN 184
Query: 68 ------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
A +F +MV GV P+V T II G+ G M +G+ P+
Sbjct: 185 HRDYDDAERVFRDMVRN-GV--SPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPN 241
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VVT N + D K K++EA LL M V N +YN++++G
Sbjct: 242 VVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVE 301
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
KG D +YN L+NG+CK+ N+ + L EM+ +G+ + TY TL
Sbjct: 302 EMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTL-------- 353
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
I+ + K G + A+++F + T LIDG C+ G + A+ +
Sbjct: 354 ---------INCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + G +P VVTYN ++HG+C G+ Q+A G+L M E GL P+
Sbjct: 405 LSEMIVS-GFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD 451
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 149/378 (39%), Gaps = 87/378 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G VLL ++ +PN+VT+ +LI +C G + A +F ++ V PN T+
Sbjct: 326 GNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTY 385
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
TL IDG C+ G M + G P
Sbjct: 386 TTL-----------------------------IDGFCQKGLMNEAYKVLSEMIVSGFSPS 416
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VVT N + G+++EA +L M++R + P+ +Y+T++ GF
Sbjct: 417 VVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKE 476
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
KG D +Y+ LI G C + + +A L REM+ G+ D TY +L
Sbjct: 477 EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDG 536
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV------- 252
M PD+ Y+ I+GL K A ++ + + V
Sbjct: 537 ELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYN 596
Query: 253 LTIETCN--------CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
IE C+ L+ G C G + A +F ++Q P+ YN+MIHG +
Sbjct: 597 TLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQR-NHKPNAAIYNLMIHGHSRG 655
Query: 305 GQHQKANGLLLDMEETGL 322
G KA L +++E +
Sbjct: 656 GNVHKAYNLYMELEHSSF 673
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +G + S PN+VT+N+++ G C+ GR+ A + + +P+ T+
Sbjct: 235 GKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTY 294
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+L A +FEEMV + G+ +P V +IDG C G
Sbjct: 295 GSLISGMCKQGRLEEASKIFEEMVQK-GL--RPSAVIYNTLIDGFCNKGNLDMASAYKDE 351
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G+ P + T N + L + + +EA C+++ + ++ ++P+ TYN L++G+
Sbjct: 352 MLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCAN 411
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ G + +Y L++ K +++A L +++ SEG+ DA +N
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPPD + T + G + G V EA ++F +
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRG 531
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ N LI G + G +K A+ + + ++ + G P V+TYN ++ G CK + A
Sbjct: 532 IKPDHISFNTLISGYSRRGDIKDAFRVRNEML-DTGFNPTVLTYNALVQGLCKNQEGDLA 590
Query: 311 NGLLLDMEETGLEPN 325
LL +M G+ P+
Sbjct: 591 EELLKEMVSKGMTPD 605
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 157/360 (43%), Gaps = 58/360 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +VL + ++ TFN +I LC EG++ +A + PN++T
Sbjct: 199 LNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVT 258
Query: 61 FNTLALVALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNV 117
+NT+ V+ + G + D + T M Q + PD T
Sbjct: 259 YNTI-----------VHGYCSSGRVEAADAILTT-----------MKRQKIEPDSFTYGS 296
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + K G++EEA+ + E M+Q+ + P+ YNTL+DGF KG
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKG 356
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ +YN LI+ ++ ++A + +E+ +GI DA TYN L
Sbjct: 357 ISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF 416
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + + P YT+ + L K + EA +F I + + N LIDG
Sbjct: 417 LLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGH 476
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C +K A+++ M + PD VT+N ++ G C+EG+ ++A L +M+ G++P+
Sbjct: 477 CSNSNVKGAFELLKD-MDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 101/237 (42%), Gaps = 53/237 (22%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A F+L +L S P T+ SL+ L + R+ EA LFKK+ P+ I FN
Sbjct: 412 AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNA 471
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGM-----RPDVV 113
L IDG C K F + + M PD V
Sbjct: 472 L-----------------------------IDGHCSNSNVKGAFELLKDMDRMKVPPDEV 502
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------W 159
T N + ++GK+EEA L + M +R + P+ ++NTL+ G++
Sbjct: 503 TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEM 562
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G V +YN L+ G CK++ + A L +EM+S+G+ D TTY TL I V
Sbjct: 563 LDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKV 619
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 58/312 (18%)
Query: 54 CDPNVITFNTL---------ALVALNLFEEMVNE-------FGVICKPDVVTCTNIIDGL 97
C PNV+TFNTL L AL L + MV E K DVV T I+D L
Sbjct: 6 CRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRL 65
Query: 98 CKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
CKDG M ++G+ P+V+T N M D+ G+ +A+ LL MI++ +NP+
Sbjct: 66 CKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDI 125
Query: 148 CTYNTLMDGFAWWSKGCR-HDVY-------------SYNILINGYCKDRNVEDAVSLCRE 193
T++ L++ F K ++Y +YN +I+G+CK V+DA +
Sbjct: 126 VTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDS 185
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M S+G D T++TL I+G K V M++F + V
Sbjct: 186 MASKGCSPDVVTFSTL-----------------INGYCKAKRVDNGMEIFCEMHRRGIVA 228
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T LI G C++G L A D+ + ++ + G+ PD +T++ M+ G C + + +KA +
Sbjct: 229 NTVTYTTLIHGFCQVGDLDAAQDLLNEMI-SCGVAPDYITFHCMLAGLCSKKELRKAFAI 287
Query: 314 LLDMEETGLEPN 325
L D++++ + P
Sbjct: 288 LEDLQKSEVCPR 299
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 42/213 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++VTF++LI E ++ EA ++K++ + P IT+
Sbjct: 104 GRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITY 163
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVV-TCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
N+ M++ F CK D V ++D M +G PDVVT + + +
Sbjct: 164 NS-----------MIDGF---CKQDRVDDAKRMLDS------MASKGCSPDVVTFSTLIN 203
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
K +++ + M +R + NT TY T LI+G+C+
Sbjct: 204 GYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT---------------------LIHGFCQ 242
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+++ A L EM+S G+ D T++ + +
Sbjct: 243 VGDLDAAQDLLNEMISCGVAPDYITFHCMLAGL 275
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 155/348 (44%), Gaps = 72/348 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
TP++ F++++ CT GR+ +A LF+K+ +
Sbjct: 194 TPDVYLFSTMVNAFCTGGRVDDAIELFRKME---------------------------KV 226
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
GV P+VVT NII GLCK+G M + ++P +VT V+ + L K + +
Sbjct: 227 GV--APNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFD 284
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILI 175
EANC+L+ M R PN YNTL+DG+ S G + + N LI
Sbjct: 285 EANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLI 344
Query: 176 NGYCKDRNVEDAVSLCREMLSEG------------------IRADATTYNTLFMAINNVP 217
GYCK +E A L EML+ G R D+ + M + N
Sbjct: 345 QGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFK 404
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + T + GL +NG EA++++ + T N LI GLC+ G + A +
Sbjct: 405 PNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKL 464
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ GL D ++YN +I CKEG+ ++ L +M G++P+
Sbjct: 465 LKEMLER-GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPD 511
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 150/365 (41%), Gaps = 72/365 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + + +L+ F PN L+ GLC G+ EA L+ +L N +T N
Sbjct: 387 RFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSN 446
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
L I GLC+ G M+++G+ D
Sbjct: 447 AL-----------------------------IHGLCEAGSKEEAAKLLKEMLERGLVLDS 477
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK 162
++ N + K+GK+EE L E M++R + P+ TYN L+ G W +
Sbjct: 478 ISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHE 537
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----- 213
G D Y+Y I+I+GYCK VE+ L +EM++ I +A Y TL A
Sbjct: 538 CKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGN 597
Query: 214 -------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+P S Y++ I GL G V A ++ + +
Sbjct: 598 MREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTA 657
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI G CK+G++ I + N + P+ +TY IMI+G CK G + A LL +M +
Sbjct: 658 LIGGYCKLGQMHKVDSILQEMSIN-NVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQK 716
Query: 321 GLEPN 325
G+ P+
Sbjct: 717 GIVPD 721
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 161/391 (41%), Gaps = 87/391 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ PN+VT+N++I GLC GR+ EA + +K+ P+++T+
Sbjct: 211 GRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTY 270
Query: 62 NTL--ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L LV L F+E +++ G P+ V +IDG C+ G M
Sbjct: 271 GVLINGLVKLERFDEANCILKEMSDRGY--APNNVVYNTLIDGYCRIGNISTALQIRDDM 328
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ----------------------- 140
+ G+ P+ VT N + K +ME A LLE M+
Sbjct: 329 ISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRF 388
Query: 141 ------------RDVNPNTCTYNTLMDGF-----------AWW---SKGCRHDVYSYNIL 174
R+ PN L+ G W+ KG + + N L
Sbjct: 389 DSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNAL 448
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+G C+ + E+A L +EML G+ D+ +YNTL +A K G
Sbjct: 449 IHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILAC-----------------CKEG 491
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V E K+ + + T N L+ GLC +G+++ A ++H +N G PD TY
Sbjct: 492 KVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKN-GNFPDAYTY 550
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IMI G+CK + ++ L +M +E N
Sbjct: 551 GIMIDGYCKANRVEEGEKLFQEMVTMKIEQN 581
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 168/377 (44%), Gaps = 57/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S + ++ + +PN VT NSLI+G C ++ A L +++ N T
Sbjct: 315 IGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGT 374
Query: 61 FNTLA----------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
F ++ L + E ++ F KP+ T ++ GLC++G
Sbjct: 375 FTSVIHRLCLKCRFDSALLFIMEMLLRNF----KPNDGLLTLLVSGLCQNGKQSEAIELW 430
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------ 154
++++G + VT N + L + G EEA LL+ M++R + ++ +YNTL+
Sbjct: 431 YRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKE 490
Query: 155 ----DGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+GF +G + D+Y+YN+L++G C +E+A L E G DA TY
Sbjct: 491 GKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTY 550
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ M + ++ VY T I +NG + EA ++ + +
Sbjct: 551 GIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRS 610
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
T T + LI GL IG + A + M+ GL+P+VV Y +I G+CK GQ
Sbjct: 611 RGIPQTSATYSSLIHGLSNIGLVDSANQLLDE-MRKEGLSPNVVCYTALIGGYCKLGQMH 669
Query: 309 KANGLLLDMEETGLEPN 325
K + +L +M + PN
Sbjct: 670 KVDSILQEMSINNVHPN 686
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+ +I G C R+ E +LF+++ + N + + TL A L
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL 604
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
++M + G+ T +++I GL G M +G+ P+VV +
Sbjct: 605 RDDMRSR-GI--PQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGG 661
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G+M + + +L+ M +V+PN TY +++G KG D
Sbjct: 662 YCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPD 721
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+YN L NG+CK+ +E+A+ +C M + GI D TY TL
Sbjct: 722 AVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTL 763
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 19/155 (12%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNE 78
T++SLI GL G + A +L ++ PNV+ + L L ++ + ++ E
Sbjct: 618 ATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQE 677
Query: 79 FGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
+ P+ +T T +I+G CK G M +G+ PD VT N +T+ K+GK
Sbjct: 678 MSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGK 737
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
MEEA + ++M ++ + TY TL+DG W K
Sbjct: 738 MEEALKVCDLMSTGGISLDDITYTTLIDG---WHK 769
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
HVY+T L GF + ++FS + N +++TCN L+ L K +K+++ +F
Sbjct: 132 HVYSTQFKHL---GFGV-VFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFD- 186
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M + G+TPDV ++ M++ FC G+ A L ME+ G+ PN
Sbjct: 187 IMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPN 231
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 45/356 (12%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
++ S + P+ TFNSLI G C ++ A LF K+ + +V+++ TL L
Sbjct: 1 MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMM-----DQGMRPDVVTLNVMTDN 121
+E V FG + +PD+ ++ GLC ++G +M + G RP + D
Sbjct: 61 IDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDF 120
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
++ K +EA +L+ M ++ + P T +++ + + GC+ +
Sbjct: 121 RCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPN 180
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
V++YN L+ G+C + V A++L +M + G+ DA TYN L
Sbjct: 181 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 240
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + + D + Y I+ L K+G +A +F ++ T N LI+GLCK G
Sbjct: 241 LMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSG 300
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ IAW M + G TPD TY+ I CK Q+ + +M + ++P+
Sbjct: 301 KADIAWKFLEK-MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 355
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 150/359 (41%), Gaps = 41/359 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L + PN VTFNSLI GLC G+ A + +K+ C P+ T+
Sbjct: 265 GRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTY 324
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
++ + L+ EM+ + KP V T +I L K+ G
Sbjct: 325 SSFIEHLCKMKGSQEGLSFIGEMLQK---DVKPSTVNYTIVIHKLLKERNYGLVARTWGE 381
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+ G PDVVT +G++ EA +L M + V +T YNTLMDG A
Sbjct: 382 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 441
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S + ++Y IL+ + R VED + L + + I + T
Sbjct: 442 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI--ELTDVFG 499
Query: 209 LF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
LF M N P+S Y++ ++G ++G EA + S + L + L+ C
Sbjct: 500 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 559
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K R AW + ++Q+ G P +++Y ++ G EGQ KA + ++ P+
Sbjct: 560 KSKRYLDAWVLVCSMIQH-GFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPD 617
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 138/348 (39%), Gaps = 71/348 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S +L + + PN+ T+N+L++G C EG++ +A L K+ +P+ +T+
Sbjct: 160 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 219
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
N L I G C DG M G+ D
Sbjct: 220 NLL-----------------------------IRGQCIDGHIESAFRLLRLMEGDGLIAD 250
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW--- 160
T N + + L KDG+ ++A L + + R + PN T+N+L++G AW
Sbjct: 251 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 310
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S GC D Y+Y+ I CK + ++ +S EML + +V
Sbjct: 311 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-----------------DVK 353
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P + YT I L K + + + + C + T + C GRL A ++
Sbjct: 354 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 413
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M M G+T D + YN ++ G GQ A +L M PN
Sbjct: 414 L-MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 152/355 (42%), Gaps = 54/355 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
AS +L +++ S F P++VTFN+LI C EG + EA +L ++ +PN +++
Sbjct: 397 ASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTP 456
Query: 64 L---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
L +VA +L EM+ G PDVVT +I GL G M
Sbjct: 457 LIHGFCVRGEVMVASDLLVEMI---GRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMA 513
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
++ + PD NV+ L K + A LL M+++ V P+ Y TL+DGF
Sbjct: 514 ERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLS 573
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG D+ +YN +I GYCK + +AV M G
Sbjct: 574 DARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVG------------ 621
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YTT IDG K G + A++ + +C I T LI G C IG
Sbjct: 622 -----CIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGN 676
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ MQ+ GL P+VV Y ++I K+ + +A M PN
Sbjct: 677 TDSA-EVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPN 730
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 143/356 (40%), Gaps = 52/356 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G +LLG + M P +VT+ ++I L + + + L ++ PNV +
Sbjct: 325 GDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIY 384
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NT+ +CK C + L M+ PDVVT N +
Sbjct: 385 NTVIYA--------------LCK-----CRSASQALAVLNQMVASRFDPDVVTFNTLIAA 425
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
++G +EEA LL I+R++ PN +Y L+ GF +G D
Sbjct: 426 FCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPD 485
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
V + LI+G V++A+ + +M + DA YN L +
Sbjct: 486 VVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLV 545
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
V PD VYTT IDG ++ + +A K+F + I N +I G CK G
Sbjct: 546 EMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSG 605
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A M+ G PD TY +I G+ K+G + A L DM + +PN
Sbjct: 606 MMNEAVMCMSS-MRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPN 660
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 40/227 (17%)
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
VM L +G++EE L+E A W +GC YN+LI+
Sbjct: 281 VMVRGLCLEGRVEEGRRLIE---------------------ARWGEGCVPGAVFYNVLID 319
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ +V + L EM +GI TY + M + P
Sbjct: 320 GYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSP 379
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +Y T I L K +A+ V + + + + T N LI C+ G ++ A +
Sbjct: 380 NVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLL 439
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ L P+ ++Y +IHGFC G+ A+ LL++M G P+
Sbjct: 440 REAIRRE-LEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPD 485
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 112/272 (41%), Gaps = 53/272 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
++V +N++IKG C G + EA + C P+ T+ TL AL
Sbjct: 590 DIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFL 649
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+M+ CKP++VT ++I G C G M +G+ P+VV V+ +L
Sbjct: 650 CDMMKRR---CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSL 706
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
K K +A E M+ +PN T + L++G CR+ +IN C D
Sbjct: 707 FKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLT----NCRYG------MINSNCSDT 756
Query: 183 NVEDAVS----LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+ S + + ++S+G+ + YN + + L ++ + +
Sbjct: 757 DQAHKKSALLDVFKGLISDGLDPRISAYNAIIFS-----------------LCRHNMLGK 799
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
AM++ + N C+ T L+ G +G+
Sbjct: 800 AMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D YS +++ G C + VE+ L EG A YN L
Sbjct: 275 DDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLL 334
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P Y I L + + + + + ++ N +I LCK
Sbjct: 335 GEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKC 394
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + + ++ + PDVVT+N +I FC+EG ++A LL + LEPN
Sbjct: 395 RSASQALAVLNQMVAS-RFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPN 450
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G VL + PN+V + LI L + + ++AA F+ + + C PN T
Sbjct: 674 IGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDAT 733
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVT 114
+ L N M+N C++ K ++ G+ P +
Sbjct: 734 MHYLVNGLTNCRYGMINS----------NCSDTDQAHKKSALLDVFKGLISDGLDPRISA 783
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
N + +L + + +A L E M + P+ T+ +L+ GF+
Sbjct: 784 YNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFS 827
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 156/340 (45%), Gaps = 62/340 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNLF 72
N V++ ++I GLC GRI E LFKK+ C P V T+ N L ++LF
Sbjct: 283 NEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLF 342
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
EM C+P+V T T ++D +CK+ MM++G+ P VVT N +
Sbjct: 343 NEMRER---SCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGY 399
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
++G++E A +L +M + PN TYN L+ GF+ K +
Sbjct: 400 CEEGRIEAALEILGLMESNNCRPNERTYNELICGFS---------------------KRK 438
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYT 224
+V A++L +ML + TYN+L + N + PD Y+
Sbjct: 439 HVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYS 498
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ID L K+ + EA +F+++ LIDG CK G++ A + M +
Sbjct: 499 VFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLER-MHS 557
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
P+ TYN +I+G CKEG+ Q+ ++ +M + G++P
Sbjct: 558 EDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKP 597
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 149/335 (44%), Gaps = 61/335 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+L ++ P++VT+N+LI+G C EGRI A + + C PN T+N L
Sbjct: 376 ILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFS 435
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ L +M+ P +VT ++I CK G + + G+ P
Sbjct: 436 KRKHVHKAMTLLSKMLES---KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVP 492
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D T +V D L K +MEEA C L +N+L + KG + +
Sbjct: 493 DQWTYSVFIDTLCKSKRMEEA-CDL--------------FNSLKE------KGIKANEVM 531
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y LI+G+CK +++A+SL M SE +++TYN+L I G+
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSL-----------------IYGV 574
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G V E + + + T+ T LI+ + + G A +F+ M + G PD
Sbjct: 575 CKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQ-MVSFGHKPD 633
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V TY IH +C G ++A G++ M E G+ P+
Sbjct: 634 VYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPD 668
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 53/357 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALN 70
F ++ ++N L+ L I E R++ ++ PN+ T NT+ +V N
Sbjct: 175 FKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEAN 234
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTD 120
L+ + + G+ PD T T++I G C++ M ++G R + V+ +
Sbjct: 235 LYVSKIFQAGL--SPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIH 292
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL-------------MDGF-AWWSKGCRH 166
L + G+++E L + M + D P TY + MD F + C
Sbjct: 293 GLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEP 352
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------------- 209
+V++Y ++++ CK+R ++++ + EM+ +G+ TYN L
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M NN P+ Y I G K V +AM + S + K ++ T N LI CK
Sbjct: 413 GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKA 472
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G A+ + +L +N GL PD TY++ I CK + ++A L ++E G++ N
Sbjct: 473 GHFDSAYKLLDLLKEN-GLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKAN 528
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL R+ PN T+NSLI G+C EG++ E + + ++ P V T+
Sbjct: 543 GKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATY 602
Query: 62 NTLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L L +F +MV+ FG KPDV T T I C G
Sbjct: 603 TILIEEMLREGDFDHANRVFNQMVS-FG--HKPDVYTYTAFIHTYCTSGNVKEAEGMMAR 659
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M++ G+ PD +T ++ + G +A +L+ M+ +P+ +N L+ W+
Sbjct: 660 MIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI----WY 713
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 160/359 (44%), Gaps = 51/359 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L F PN T+N LI+G C G++ +A +F + PN T NTL L
Sbjct: 19 LFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLC 78
Query: 67 ------VALNLFEEMVNE--FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
AL LF EM +++ + G +D Q MR ++
Sbjct: 79 EIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATG 138
Query: 119 TDNLSKDG---------KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------- 158
T NL G ++E+A + M V P+ +Y+ L+ +
Sbjct: 139 TYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHAL 198
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------- 209
+ + C D+ +YN+L++GYCK +A SL +E+L G + TY+ +
Sbjct: 199 FSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDK 258
Query: 210 -------FMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
FM + +N P++ + T I G K G + +A+K+F+ + C TI T N
Sbjct: 259 VEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNT 318
Query: 261 LIDGLCKI-GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
LID LCK G + A D+F+ L + GLTP +VTYN +I GFC + +A +ME
Sbjct: 319 LIDSLCKKRGGVYTAVDLFNKL-EGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME 376
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 162/357 (45%), Gaps = 53/357 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG----RILEAARLFKKLNVFCCDPN 57
GR L + S + T+N ++KGLC E R+ +A FK++ +P+
Sbjct: 116 GRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPD 175
Query: 58 VITFNTLALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------M 103
+ +++ L L AL+ M + C PD++T ++DG CK G +
Sbjct: 176 LESYHIL-LSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ G P+V T +++ + K K+EEA + MI+ + PN T+NTL+ GF
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGML 294
Query: 158 -------AWWSK-GCRHDVYSYNILINGYCKDRN-VEDAVSLCREMLSEGIRADATTYNT 208
A K GC+ + +YN LI+ CK R V AV L ++ G+ TYN+
Sbjct: 295 EDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNS 354
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I G + EAM+ F + KC + T + LIDGLCK+
Sbjct: 355 L-----------------IQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKV 396
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+K A M+ G TP VVTY +I+GFCK G+ + A M+ G PN
Sbjct: 397 RRMKEAAKTLED-MKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE 73
M+C +P+++T+N L+ G C G+ EA L K++ +PNV T++ + L+ E
Sbjct: 202 MTC-SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVE 260
Query: 74 EMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
E F + C P+ VT +I G CK G + D G + +VT N +
Sbjct: 261 EAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLI 320
Query: 120 DNL-SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------GCR 165
D+L K G + A L + + P TYN+L+ GF + C
Sbjct: 321 DSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCA 380
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V +Y+ILI+G CK R +++A +M + G TY L
Sbjct: 381 PNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLF 440
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P++ ++ T IDGL K + +++ + C + T NCLI GLC
Sbjct: 441 FEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCS 500
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
R++ A +F + P+V T+N +I G C + + ++A +L
Sbjct: 501 ANRVEDAQRLFDGM----ACAPNVTTFNFLIRGLCAQKKVEEARNIL 543
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 53/212 (25%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------- 217
+ ++YN+LI G+CK + AVS+ +M S G+ +A+T NTL + + +
Sbjct: 31 NAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLF 90
Query: 218 ---------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-- 266
P S + + G + G V +A+ + + T N ++ GLC
Sbjct: 91 REMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWE 150
Query: 267 --KIGRLKIAWDIF-------------------------------HMLMQNPGLTPDVVT 293
RL+ A + F H L +PD++T
Sbjct: 151 NKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMT 210
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN+++ G+CK GQ +A L+ ++ + G EPN
Sbjct: 211 YNVLMDGYCKIGQTYEAQSLMKEILKAGYEPN 242
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLF 72
+TP +VT+ LI G C G + A F+K+ + C PN + FNTL A A +
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGL 473
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGMR--PDVVTLNVMTDNLSKD 125
+ + CKPDV+T +I GLC +D + GM P+V T N + L
Sbjct: 474 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAPNVTTFNFLIRGLCAQ 533
Query: 126 GKMEEANCLLE 136
K+EEA +L+
Sbjct: 534 KKVEEARNILD 544
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + ++ ++ PN V FN+LI GLC R + RL ++ C P+VIT+
Sbjct: 432 GELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITY 491
Query: 62 NTL--ALVALNLFEEMVNEF-GVICKPDVVTCTNIIDGLC 98
N L L + N E+ F G+ C P+V T +I GLC
Sbjct: 492 NCLISGLCSANRVEDAQRLFDGMACAPNVTTFNFLIRGLC 531
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 56/340 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLFE 73
TP+++T+ ++I G C G ++EA +LF ++ +P+ +TF L A + F
Sbjct: 383 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 442
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ C P+VVT T +IDGLCK+G M G++P++ T N + + L
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G +EEA L+ +N +T TY TLMD + KG + +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N+L+NG+C +ED L ML++GI +ATT+N+L
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV------------------- 603
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTI----ETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
K + +K +AI C + +T L+ G CK +K AW +F M+
Sbjct: 604 --KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE-MKGK 660
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + V TY+++I GF K + +A + M GL +
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + + +TP+++++++++ G C G + + +L + + PN
Sbjct: 259 LGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 318
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ ++ + A F EM+ + G++ PD V T +IDG CK G
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQ-GIL--PDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M + + PDV+T + + G M EA L M + + P++ T+ L++G+
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC +V +Y LI+G CK+ +++ A L EM G++ + TYN
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV---FSAIGNHKCVLTIETCNCLIDG 264
++ ++GL K+G + EA+K+ F A G + +T T L+D
Sbjct: 496 SI-----------------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT---LMDA 535
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK G + A +I ++ GL P +VT+N++++GFC G + LL M G+ P
Sbjct: 536 YCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594
Query: 325 N 325
N
Sbjct: 595 N 595
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 61/324 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ V + +LI G C G I A++ F +++ P+V+T+ + + A L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F EM F +PD VT T +I+G CK G M D G P+VVT + D
Sbjct: 409 FHEM---FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K+G ++ AN LL M W G + ++++YN ++NG CK
Sbjct: 466 LCKEGDLDSANELLHEM---------------------WKIGLQPNIFTYNSIVNGLCKS 504
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N+E+AV L E + G+ AD TY TL +D K+G + +A +
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTL-----------------MDAYCKSGEMDKAQE 547
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + TI T N L++G C G L+ + + ++ G+ P+ T+N ++ +
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQY 606
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C + A + DM G+ P+
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPD 630
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 47/275 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + ++ + +PN+VT+ +LI GLC EG + A L ++ PN+ T+
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
N++ L EE +V EF D VT T ++D CK G M+
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++P +VT NV+ + G +E+ LL M+ + + PN T+N+L+ +
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 614
Query: 158 --AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A + S+G D +Y L+ G+CK RN+++A L +EM +G +TY+ L
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL-- 672
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
I G K LEA +VF +
Sbjct: 673 ---------------IKGFLKRKKFLEAREVFDQM 692
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 87/321 (27%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM-----------DQGMRPDVVTLN 116
A +FE+M+N +G++ D +C + L KD + + G+ +V + N
Sbjct: 194 ARRVFEKMLN-YGLVLSVD--SCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 250
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + + G+++EA+ LL +M + P DV SY+ ++N
Sbjct: 251 IVIHFVCQLGRIKEAHHLLLLMELKGYTP---------------------DVISYSTVVN 289
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ ++ L M +G++ ++ Y ++ M + P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ VYTT IDG K G + A K F + + + T +I G C+IG + A +F
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 279 HML----------------------------------MQNPGLTPDVVTYNIMIHGFCKE 304
H + M G +P+VVTY +I G CKE
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G AN LL +M + GL+PN
Sbjct: 470 GDLDSANELLHEMWKIGLQPN 490
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 43/219 (19%)
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-- 205
C Y ++D F W ++ S I+I+ ++++ A SL E + + T
Sbjct: 99 CDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW-ERPKLNVTDSF 157
Query: 206 ---YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC-- 260
++ L + D V+ + L G + EA +VF + N+ VL++++CN
Sbjct: 158 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYL 217
Query: 261 ----------------------------------LIDGLCKIGRLKIAWDIFHMLMQNPG 286
+I +C++GR+K A + +LM+ G
Sbjct: 218 TRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKG 276
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPDV++Y+ +++G+C+ G+ K L+ M+ GL+PN
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 161/361 (44%), Gaps = 49/361 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+L R L P+++T+ LI+ C E + +A +L ++ C P+V+T+N L +
Sbjct: 3 VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVV 113
+E + + +P+V+T I+ +C G MD +G P VV
Sbjct: 63 KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T N++ + L + G + A +LE M PN+ +YN L+ GF
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM 182
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV--- 216
S+GC D+ +YN ++ CKD V+ AV L ++ S+G TYNT+ ++ V
Sbjct: 183 VSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 242
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
PD Y++ I GL + G V EA+K F + T N +
Sbjct: 243 DQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSI 302
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ GLCK + A D F M + G P V+Y I+I G EG ++A LL ++ G
Sbjct: 303 MFGLCKAQQTDRAID-FLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361
Query: 322 L 322
+
Sbjct: 362 V 362
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 43/285 (15%)
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C PDV+T T +I+ C + M +G +PDVVT NV+ + + K+G+++EA
Sbjct: 12 CYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAI 71
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVYSYNILINGY 178
L M PN T+N ++ W KGC V ++NILIN
Sbjct: 72 KFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFL 131
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ + A+ + +M + G ++ +YN L M PD
Sbjct: 132 CRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDI 191
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y T + L K+G V A+++ + + + C + T N +IDGL K+G+ A ++ H
Sbjct: 192 VTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE 251
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GL PDV+TY+ +I G +EG+ ++A D+E G++PN
Sbjct: 252 -MRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPN 295
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 36/247 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL ++ +P++VTFN LI LC +G + A + +K+ C PN +++
Sbjct: 100 GRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSY 159
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L A+ E MV+ C PD+VT ++ LCKDG
Sbjct: 160 NPLLHGFCKEKKMDRAIQYLEIMVSRG---CYPDIVTYNTMLTALCKDGKVDAAVELLNQ 216
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G P ++T N + D LSK GK ++A LL M + + P+ TY++L+ G + K
Sbjct: 217 LSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGK 276
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + + ++YN ++ G CK + + A+ M+S+G + +Y
Sbjct: 277 VEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTI 336
Query: 209 LFMAINN 215
L I N
Sbjct: 337 LIEGIAN 343
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 32/206 (15%)
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
+L+ ++++ P+ TY L++ S+GC+ DV +YN+L+NG C
Sbjct: 3 VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+ +++A+ M S G + + T+N + ++ + G ++A
Sbjct: 63 KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCS-----------------TGRWMDA 105
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
K+ + + C ++ T N LI+ LC+ G L A DI M G TP+ ++YN ++H
Sbjct: 106 EKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEK-MPTHGCTPNSLSYNPLLH 164
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCKE + +A L M G P+
Sbjct: 165 GFCKEKKMDRAIQYLEIMVSRGCYPD 190
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T++SLI GL EG++ EA + F + F PN T
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFT 298
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N++ FG +CK ID L +M+ +G +P V+ ++ +
Sbjct: 299 YNSIM-------------FG-LCKAQ--QTDRAIDFL---AYMISKGCKPTEVSYTILIE 339
Query: 121 NLSKDGKMEEANCLLEVMIQRDV 143
++ +G +EA LL + R V
Sbjct: 340 GIANEGLAKEALELLNELCSRGV 362
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 163/351 (46%), Gaps = 54/351 (15%)
Query: 9 VLLGRILMSCF--TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
V L R L+ F P++V++N++++GLC R L +++ C PN++TF+TL
Sbjct: 201 VRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIG 260
Query: 66 -LVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGM 108
L LFE + + E G C PDV IIDG+CK+ M G+
Sbjct: 261 HLCRNGLFERVHEVHAQMAEHG--CAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGL 318
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
P+VV N + L + EEA LL M +D + T+N L+D
Sbjct: 319 SPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIE 378
Query: 158 ---AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
GC DV +Y +ING+CK+ +++AV L R M + G R
Sbjct: 379 VLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCR-------------- 424
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P++ YT + GL ++A ++ S + C T N LI+ LCK G ++ A
Sbjct: 425 ---PNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQA 481
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ ++ N G +PD+++Y+ +I G K G +A LL M + G+ PN
Sbjct: 482 IELLKQMLVN-GCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPN 531
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 154/350 (44%), Gaps = 49/350 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
P++ + ++I G+C E R+ A + ++ + PNV+ +NTL L + + +EE
Sbjct: 284 APDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEG 343
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ F C D VT ++D LC++G M++ G PDV+T + +
Sbjct: 344 LLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFC 403
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVY 169
K+G ++EA LL M PNT +Y ++ G W +GC +
Sbjct: 404 KEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPV 463
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
++N LIN CK VE A+ L ++ML G D +Y+T+ M
Sbjct: 464 TFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVM 523
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P++ +Y++ L G + + +++F I + N +I LCK G
Sbjct: 524 VKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGET 583
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A + F M + G P+ TY I+I G EG ++A +L ++ G
Sbjct: 584 DRAIE-FLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 135/338 (39%), Gaps = 51/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
PN T+ L++ LC GRI +A + + C P ++ + L A
Sbjct: 108 APNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYH-VTLEAACRASGFRGAV 166
Query: 80 GVI-------CKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVMTDN 121
GV+ C DV C ++ +C G + G PDVV+ N +
Sbjct: 167 GVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRG 226
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + L+E M+ PN T++TL+ GC D
Sbjct: 227 LCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPD 286
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V Y +I+G CK+ +E A + M S G+ + YNTL +
Sbjct: 287 VRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTL-----------------L 329
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL EA + + + + C L T N L+D LC+ G + ++ ++++ G
Sbjct: 330 KGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEH-GC 388
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV+TY +I+GFCKEG +A LL M G PN
Sbjct: 389 MPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPN 426
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ +++ PN VTFN+LI LC +G + +A L K++ V C P++I+++T+ L
Sbjct: 449 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 508
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+E + V+ K P+ + ++I L +G + D +R D V
Sbjct: 509 KAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAV 568
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
N + +L K G+ + A L M+ PN TY L+ G A
Sbjct: 569 LYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLA 613
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 162/356 (45%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P +VT+N+++ C +G + EA +L ++ C PN +T+N L A L
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKEL 259
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
++M+ G+ + V T +I G C+ G M+ +G P VVT N +
Sbjct: 260 IQDML-RLGL--EVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYG 316
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K G++ +A LL+VM+ +++ P+ +YNTL+ G+ +
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPS 376
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP------- 217
V +YN LI+G C+ +++ A+ L EM+ G D T+ T F + N+P
Sbjct: 377 VVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFD 436
Query: 218 --------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD Y T I G K G +A + + + T N IDGL K+G
Sbjct: 437 EMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLG 496
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
LK A ++ ++ N GL PD VTY +IH G +KA L L+M G+ P+
Sbjct: 497 NLKEASELVKKMLYN-GLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 154/359 (42%), Gaps = 58/359 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++V++N+LI G G I EA LF +L P+V+T+
Sbjct: 321 GRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTY 380
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL VA+ L +EM+ PDV T T + G CK G
Sbjct: 381 NTLIDGLCRLGDLDVAMRLKDEMIKHGP---DPDVFTFTTFVRGFCKMGNLPMAKELFDE 437
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+++G++PD K G +A + E M+ R P+ TYN +DG
Sbjct: 438 MLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGN 497
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +Y +I+ + ++ A +L EMLS+GI TY
Sbjct: 498 LKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTV 557
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTIETCNCLIDGLC 266
L H Y + L + F G H V+T N LI+GLC
Sbjct: 558 LI----------HSYAV------RGRLKLAILHFFEMHEKGVHPNVITY---NALINGLC 598
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+ ++ A++ F MQ G++P+ TY I+I+ C G Q+A L DM + ++P+
Sbjct: 599 KVRKMDQAYNFFAE-MQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPD 656
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 121/291 (41%), Gaps = 69/291 (23%)
Query: 103 MMDQGMRPDVVTLNVMTDNLS-KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
M+ +G+ PDV N + L +D ++ A + VM++ + P TYNT++D
Sbjct: 157 MVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKG 216
Query: 157 ---------FAWWSKGCRHD-----------------------------------VYSYN 172
F + GC + VY+Y+
Sbjct: 217 MVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYD 276
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LI GYC+ +E+A L EMLS G TYNT+ M
Sbjct: 277 PLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNK 336
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
N+ PD Y T I G + G + EA +F+ + ++ T N LIDGLC++G L +A
Sbjct: 337 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVA 396
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++++ G PDV T+ + GFCK G A L +M GL+P+
Sbjct: 397 MRLKDEMIKH-GPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPD 446
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 53/239 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F + +L F P+++T+N I GL G + EA+ L KK+
Sbjct: 460 LGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKM----------L 509
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+N L PD VT T+II G M+ +G+ P
Sbjct: 510 YNGLV-------------------PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFP 550
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------F 157
VVT V+ + + G+++ A M ++ V+PN TYN L++G F
Sbjct: 551 SVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFF 610
Query: 158 A-WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
A +KG + Y+Y ILIN C + ++A+ L ++ML I+ D+ T+ +L +N
Sbjct: 611 AEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNK 669
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L +L P++VT+ LI GR+ A F +++ PNVIT+
Sbjct: 531 GHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITY 590
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
N L L + ++ N F + P+ T T +I+ C G M+D
Sbjct: 591 NALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLD 650
Query: 106 QGMRPDVVTLNVMTDNLSKDGKME 129
+ ++PD T + +L+KD K+
Sbjct: 651 REIQPDSCTHRSLLKHLNKDYKLH 674
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 159/349 (45%), Gaps = 64/349 (18%)
Query: 16 MSCF--TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
M CF P+ V + +I G C G + +A R+ ++ C P+V+T+NTL
Sbjct: 7 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERR 66
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
L A L EM E GV PD+ T T +I G C +G M++Q +RPD+VT
Sbjct: 67 LLDAEGLLNEM-RERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D + + G +++AN L + M R++ PN T Y+IL
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVT---------------------YSIL 162
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+ +C+ VEDA EM+++GI + TYN++ M +N V
Sbjct: 163 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y T I G K + +A K+ + + K + T N LI+G G ++ A
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF M G+ PD TY MI+G G ++A L +M + G P+
Sbjct: 283 IFEK-MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 36/234 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L +L P++VT+N+LI G+C +G + +A L+ ++ PN +T+
Sbjct: 100 GKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTY 159
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A +EM+N+ G++ P+++T +II G C+ G
Sbjct: 160 SILIDSHCEKGQVEDAFGFLDEMINK-GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQK 216
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM + PD++T N + K+ KM +A LL +M + V P+ TYN L++GF
Sbjct: 217 MMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGN 276
Query: 158 ---AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
A W +KG D Y+Y +ING+ N ++A L EML G D
Sbjct: 277 VQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 162/359 (45%), Gaps = 45/359 (12%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L ++ S + P+ TFNSLI G C ++ A LF K+ + +V+++ TL L
Sbjct: 176 LSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCE 235
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMM-----DQGMRPDVVTLNVM 118
+E V FG + +PD+ ++ GLC ++G +M + G RP +
Sbjct: 236 AGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAV 295
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
D ++ K +EA +L+ M ++ + P T +++ + + GC
Sbjct: 296 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 355
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------- 209
+ +V++YN L+ G+C + V A++L +M + G+ DA TYN L
Sbjct: 356 KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFR 415
Query: 210 ---FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M + + D + Y I+ L K+G +A +F ++ T N LI+GLC
Sbjct: 416 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLC 475
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G+ IAW M + G TPD TY+ I CK Q+ + +M + ++P+
Sbjct: 476 KSGKADIAWKFLEK-MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 533
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 150/359 (41%), Gaps = 41/359 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L + PN VTFNSLI GLC G+ A + +K+ C P+ T+
Sbjct: 443 GRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTY 502
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
++ + L+ EM+ + KP V T +I L K+ G
Sbjct: 503 SSFIEHLCKMKGSQEGLSFIGEMLQK---DVKPSTVNYTIVIHKLLKERNYGLVARTWGE 559
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+ G PDVVT +G++ EA +L M + V +T YNTLMDG A
Sbjct: 560 MVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQ 619
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S + ++Y IL+ + R VED + L + + I + T
Sbjct: 620 TDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI--ELTDVFG 677
Query: 209 LF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
LF M N P+S Y++ ++G ++G EA + S + L + L+ C
Sbjct: 678 LFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFC 737
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K R AW + ++Q+ G P +++Y ++ G EGQ KA + ++ P+
Sbjct: 738 KSKRYLDAWVLVCSMIQH-GFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPD 795
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 138/348 (39%), Gaps = 71/348 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S +L + + PN+ T+N+L++G C EG++ +A L K+ +P+ +T+
Sbjct: 338 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 397
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
N L I G C DG M G+ D
Sbjct: 398 NLL-----------------------------IRGQCIDGHIESAFRLLRLMEGDGLIAD 428
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW--- 160
T N + + L KDG+ ++A L + + R + PN T+N+L++G AW
Sbjct: 429 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLE 488
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S GC D Y+Y+ I CK + ++ +S EML + +V
Sbjct: 489 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-----------------DVK 531
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P + YT I L K + + + + C + T + C GRL A ++
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 591
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M M G+T D + YN ++ G GQ A +L M PN
Sbjct: 592 L-MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 638
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YN +I C+ ++ A+ M+ G R DA T+N+L M
Sbjct: 155 TYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 214
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ D Y T I+GL + G + EA+++F + + L+ GLC R
Sbjct: 215 PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPD----MHMYAALVKGLCNAERG 270
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ + M+ G P Y ++ C+E + ++A +L +M E GL P
Sbjct: 271 EEGLLMLRR-MKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAP 322
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 161/374 (43%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + R+ P+++TFN+L+KGL G + +A + K++ P+ TF
Sbjct: 263 GNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTF 322
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ L A AL ++E V+ GV K + TC+ +++ LCK+G +
Sbjct: 323 SILFDGYSSNEKAEAALGVYETAVDS-GV--KMNAYTCSILLNALCKEGKIEKAEEILGR 379
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M +G+ P+ V N M D + G + A +E M ++ + P+ YN L+ F
Sbjct: 380 EMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGE 439
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG V +YNILI GY + + + +EM G + +Y T
Sbjct: 440 MENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGT 499
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V P +Y IDG G + +A + +
Sbjct: 500 LINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + T N LIDGL G+L A D+ + + GL PDV TYN +I G+ G Q+
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLL-LEISRKGLKPDVFTYNSLISGYGFAGNVQRC 618
Query: 311 NGLLLDMEETGLEP 324
L +M+ +G++P
Sbjct: 619 IALYEEMKRSGIKP 632
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L P+++T+N+LI G C G ++ ++ +++ +P++ITFNTL
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
+V A N+ +EM + G + PD T + + DG + +D G++
Sbjct: 296 KAGMVEDAENVLKEM-KDLGFV--PDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+ T +++ + L K+GK+E+A +L + + + PN YNT++DG+
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
A +G + D +YN LI +C+ +E+A +M +G+ TYN L
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N P+ Y T I+ L K +LEA V + + +
Sbjct: 473 YEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIY 532
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG C G+++ A+ F M G+ ++VTYN +I G G+ +A LLL++
Sbjct: 533 NMLIDGCCSKGKIEDAFR-FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
Query: 319 ETGLEPN 325
GL+P+
Sbjct: 592 RKGLKPD 598
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 61/354 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ + +N LI+ C G + A + K+ + P+V T+N L ++
Sbjct: 422 PDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDI 481
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDN 121
+EM + G + P+VV+ +I+ LCK ++ D+G+ P V N++ D
Sbjct: 482 LKEMEDN-GTM--PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDG 538
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHD 167
GK+E+A + M+++ + N TYNTL+DG + KG + D
Sbjct: 539 CCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPD 598
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI 213
V++YN LI+GY NV+ ++L EM GI+ TY+ L
Sbjct: 599 VFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGE 658
Query: 214 NNVPPDSHVYTTY-----IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
++ PD VY + G + F L+ + +IG K T N LI G K+
Sbjct: 659 MSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKT-----TYNSLILGQLKV 713
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G+L + M + P+ TYNI++ G C+ + A +M+E G
Sbjct: 714 GKLCEVRSLIDE-MNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGF 766
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 150/345 (43%), Gaps = 54/345 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
IL S F P+ + I+ + + LF ++ P+V +N L
Sbjct: 170 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKR 229
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVT 114
A LF+EM+ + P ++T +IDG CK G F + + M+ P ++T
Sbjct: 230 MNDAEQLFDEMLARRLL---PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLIT 286
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N + L K G +E+A +L+ M P+ T++ L DG++ K
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAV 346
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G + + Y+ +IL+N CK+ +E A + +++G+ P+
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGL-----------------VPNE 389
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+Y T IDG + G ++ A A+ NCLI C++G ++ A +
Sbjct: 390 VIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNK 449
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G++P V TYNI+I G+ ++ + K +L +ME+ G PN
Sbjct: 450 -MKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPN 493
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 140/328 (42%), Gaps = 49/328 (14%)
Query: 29 LIKGLCTEGRIL-EAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICKP 85
L+ L E +++ EAA LF L P+ + L LV F +N F I +
Sbjct: 114 LLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 173
Query: 86 D--------------VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
D V +++ GL M + P V NV+ D L K +M +A
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
L + M+ R + P+ TYNTL+DG+ + + ++N L+ G
Sbjct: 234 EQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKG 293
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
K VEDA ++ +EM G DA T++ LF DG N
Sbjct: 294 LFKAGMVEDAENVLKEMKDLGFVPDAFTFSILF-----------------DGYSSNEKAE 336
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A+ V+ + + TC+ L++ LCK G+++ A +I M GL P+ V YN M
Sbjct: 337 AALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVIYNTM 395
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+C++G A + ME+ G++P+
Sbjct: 396 IDGYCRKGDLVGARMKIEAMEKQGMKPD 423
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 142/326 (43%), Gaps = 50/326 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+V++ +LI LC ++LEA + + + P V +N L A
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+EM+ + G+ + ++VT +IDGL G + + +G++PDV T N +
Sbjct: 552 SKEMLKK-GI--ELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISG 608
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWSK-----GCRHDVYSY 171
G ++ L E M + + P TY+ L+ +G + + D+ Y
Sbjct: 609 YGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVY 668
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N +++ Y ++E A +L ++M+ + I D TTYN+L + G
Sbjct: 669 NGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLIL-----------------GQL 711
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G + E + + + +T N ++ G C++ A+ +++ MQ G DV
Sbjct: 712 KVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAY-VWYREMQEKGFLLDV 770
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
N ++ G +E + ++A ++ +M
Sbjct: 771 CIGNELVSGLKEEWRSKEAEIVISEM 796
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F +L N+VT+N+LI GL G++ EA L +++ P+V T+
Sbjct: 543 GKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTY 602
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------DQ 106
N+L + L+EEM G+ KP + T +I K+G + +
Sbjct: 603 NSLISGYGFAGNVQRCIALYEEM-KRSGI--KPTLKTYHLLISLCTKEGIELTERLFGEM 659
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-- 164
++PD++ N + + G ME+A L + MI++ + + TYN+L+ G K C
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 719
Query: 165 ------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YNI++ G+C+ ++ A REM +G D N L
Sbjct: 720 RSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNEL 776
>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 166/371 (44%), Gaps = 60/371 (16%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R++ ++LL ++ +PN VT+N+LI G EG+I AA++F +++ F PN +T+N
Sbjct: 318 RSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYN 377
Query: 63 TLA---------LVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG 107
L AL L + M +NE G N+ + + M G
Sbjct: 378 ALIGGHCHVGDFEEALRLLDHMEAAGLRLNEHG-----------NVTEAMKVYAVMNCNG 426
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------F 157
D T NV+ +L +DGK+ EA L M + + PN+ TY+ +++G F
Sbjct: 427 HGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAF 486
Query: 158 AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+++ G ++Y L+ G CK N+ +A + D+ YNTL
Sbjct: 487 SFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAET 546
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF-SAIGNHKCVLT 254
M NNV PDS+ Y++ + GL + G + A+ +F +A+G
Sbjct: 547 CKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPN 606
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
CL+DGL K G K A+ F +M+ G PD V +N +I + GQ KAN
Sbjct: 607 HVMYTCLVDGLSKAGHPKAAFYFFEEMMKK-GTCPDTVAFNAIIDSCSRRGQMMKANDFF 665
Query: 315 LDMEETGLEPN 325
M G+ PN
Sbjct: 666 STMRWWGVCPN 676
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 145/320 (45%), Gaps = 65/320 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+ TFN LI GLC EG + +A L K++ P ++T+NTL LN +
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTL----LNWY-------- 278
Query: 81 VICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
CK +ID +M+ +G+ DV T NV DNL + + +A LL+ M
Sbjct: 279 --CKKGRYKAAIELID------YMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMR 330
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK-GCRHDVY-------------SYNILINGYCKDRNVE 185
+ ++PN TYNTL++GF K G V+ +YN LI G+C + E
Sbjct: 331 KEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFE 390
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A+ L M + G+R L ++G V EAMKV++
Sbjct: 391 EALRLLDHMEAAGLR-----------------------------LNEHGNVTEAMKVYAV 421
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + TCN L+ LC+ G+L A + F M GL P+ +TY+ +I+G+ G
Sbjct: 422 MNCNGHGADHFTCNVLVSSLCRDGKLGEA-EKFLCHMSRIGLVPNSITYDCIINGYGSIG 480
Query: 306 QHQKANGLLLDMEETGLEPN 325
A DM + G P+
Sbjct: 481 DPLNAFSFFDDMIKCGQHPS 500
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 152/401 (37%), Gaps = 97/401 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+ SL+KGLC G ++EA + +L+ + + +NTL A+ L
Sbjct: 499 PSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVAL 558
Query: 72 FEEMVNE----------------------------FGVICK-----PDVVTCTNIIDGLC 98
F++MV FG P+ V T ++DGL
Sbjct: 559 FDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLS 618
Query: 99 KDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G MM +G PD V N + D+ S+ G+M +AN M V PN
Sbjct: 619 KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 678
Query: 149 TYNTLMDGFAWWSKGCRH--------------DVYSYNILINGYCK----DRNV------ 184
TYN L+ GF+ R+ D +++ LI G K D V
Sbjct: 679 TYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKM 738
Query: 185 --EDAVSLCREMLSEGIRADATTYNTLFMAINNVPP----------------DSH--VYT 224
E++ + EML G+ Y TL + V SH +
Sbjct: 739 IMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAES 798
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ GL G +AM V + + + TI T L+ C+ ++ A + +M+
Sbjct: 799 AMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKL-KGVMEL 857
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL DVV YN++I G C G A L +M L PN
Sbjct: 858 CGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 898
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 32/233 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P V T N++ ++ KD + E L M + + PN T+N L++G
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G + +YN L+N YCK + A+ L M+ +GI AD TYN
Sbjct: 253 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYN----- 307
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ID L N +A + + T N LI+G K G++
Sbjct: 308 ------------VFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIG 355
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A +F+ M L+P+ VTYN +I G C G ++A LL ME GL N
Sbjct: 356 VAAQVFNE-MSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLN 407
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSH 221
+H + Y + + K R + A S+ R + GI + + L + N++P
Sbjct: 109 KHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGI-GSKSIFGALMDTYPLCNSIPS--- 164
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V+ I K G + A++ F +G ++ TCN ++ + K R ++ W +F
Sbjct: 165 VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE- 223
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M + G+ P+V T+NI+I+G C EG +KA LL MEE G P
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVP 266
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 46/238 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ T+N L+ G + +L L+ + P+ +TF++L L + + L
Sbjct: 675 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 734
Query: 72 FEEMVNEF-----------GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+M+ E GVI P +I+G+C+ G M G
Sbjct: 735 LGKMIMEESTVVLHEMLENGVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGS 792
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
V + M L GK E+A +L+ M++ + P T+ TLM F +K
Sbjct: 793 HEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLK 852
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
G + DV +YN+LI G C + + A L EM + + TTY L AI+
Sbjct: 853 GVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAIS 910
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
V+L +L + P + +LI G+C G I A +L ++ + + + +
Sbjct: 745 VVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGL 804
Query: 69 LN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMR 109
L+ + + M+ + P + T T ++ C+D G M G++
Sbjct: 805 LHCGKTEDAMLVLDHMLR---MRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLK 861
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
DVV NV+ + +G A L E M RD+ PN TY L+D +
Sbjct: 862 LDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAIS 910
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 157/352 (44%), Gaps = 57/352 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F + IL F P+ +T N+LIKGLC G I + ++ + +++ TL
Sbjct: 112 AFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLIN 171
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
L ++ G KPDVV II+ LCK+ + D +G
Sbjct: 172 GLCKAGETKAVARLLRKLE---GHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 228
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG---- 163
+ PDVVT + GKM+EA LL M +++NP+ T++ L+D K
Sbjct: 229 ISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVD 288
Query: 164 --------CRH-----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+H D+ +YN LI+G CK+ ++E A++L +EM GI+
Sbjct: 289 EAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ---------- 338
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD + YT +DGL K G + A + F + C L + N +I+GLCK G
Sbjct: 339 -------PDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGL 391
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A D+ M+ G P+ +T+ +I ++ ++ KA +L +M GL
Sbjct: 392 FGEAMDL-KSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGL 442
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 63/227 (27%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGR---ILEAARLFKKLNVFCCDPN 57
MG+ F LL + + P++ TF+ LI L EG+ + EA LF
Sbjct: 246 MGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLF----------- 294
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
EEM ++ + PD+VT ++IDGLCK+ M + G
Sbjct: 295 ---------------EEMKHKNMI---PDIVTYNSLIDGLCKNHHLERAIALLKEMKEHG 336
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
++PDV + ++ D L K G++E A + ++ KGC +
Sbjct: 337 IQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL---------------------VKGCHLN 375
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
V+ YN++ING CK +A+ L +M +G +A T+ T+ A++
Sbjct: 376 VWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALS 422
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 170/361 (47%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + LL + + +TP++++++++I G C G + + +L +K+ PN T
Sbjct: 682 LGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYT 741
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ ++ + A F EM+ + G++ PD + T ++DG CK G
Sbjct: 742 YGSIIGLLCRICKLAEAEEAFSEMIGQ-GIL--PDTIVYTTLVDGFCKRGDIRAASKFFY 798
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M + + PDV+T + + G M EA L M+ R + P+ T+ LM+G+
Sbjct: 799 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC +V +Y LI+G CK+ +++ A L EM G++ + TYN
Sbjct: 859 HIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 918
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV---FSAIGNHKCVLTIETCNCLIDG 264
++ ++GL K+G + EA+K+ F A G + +T T L+D
Sbjct: 919 SI-----------------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT---LMDA 958
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK G + A +I ++ GL P +VT+N++++GFC G + LL M G+ P
Sbjct: 959 YCKSGEMDKAQEILTEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 1017
Query: 325 N 325
N
Sbjct: 1018 N 1018
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 154/337 (45%), Gaps = 56/337 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLFE 73
TP+++T+ ++I G C G ++EA +LF ++ +P++ITF L A + F
Sbjct: 806 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFR 865
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ C P+VVT T +IDGLCK+G M G++P++ T N + + L
Sbjct: 866 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G +EEA L+ +N +T TY TLMD + KG + +
Sbjct: 926 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIV 985
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N+L+NG+C +ED L ML++GI +ATT+N L
Sbjct: 986 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLV------------------- 1026
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
K + +K +AI C +E T L+ G C +K AW +F M+
Sbjct: 1027 --KQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQE-MKGK 1083
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + V TY+++I GF K + +A + M GL
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL 1120
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ ++ PN T+ S+I LC ++ EA F ++ P+ I + TL
Sbjct: 726 LIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFC 785
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A F EM + PDV+T T II G C+ G M++ +G+ P
Sbjct: 786 KRGDIRAASKFFYEMHSR---DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEP 842
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D++T + + K G +++A + MIQ +PN TY TL+DG
Sbjct: 843 DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
W G + ++++YN ++NG CK N+E+AV L E + G+ AD TY TL
Sbjct: 903 HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL------- 955
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+D K+G + +A ++ + + TI T N L++G C G L+
Sbjct: 956 ----------MDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + ++ G+ P+ T+N ++ +C + A + DM G+EP+
Sbjct: 1006 LLNWMLAK-GIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPD 1053
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 47/275 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + ++ + +PN+VT+ +LI GLC EG + A L ++ PN+ T+
Sbjct: 858 GHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 917
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
N++ L EE +V EF D VT T ++D CK G M+
Sbjct: 918 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLG 977
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++P +VT NV+ + G +E+ LL M+ + + PN T+N L+ +
Sbjct: 978 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKA 1037
Query: 158 --AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A + S+G D +Y L+ G+C RN+++A L +EM +G +TY+ L
Sbjct: 1038 ATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVL-- 1095
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
I G +K +EA ++F +
Sbjct: 1096 ---------------IKGFFKRKKFVEAREIFDQM 1115
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 132/321 (41%), Gaps = 87/321 (27%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----------GFMMDQGMRPDVVTLN 116
A +FE+M+N +G++ D +C + L KD + G+ +V + N
Sbjct: 617 ARKVFEKMLN-YGLVLSVD--SCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYN 673
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + + G++ EA+ LL +M + P DV SY+ +IN
Sbjct: 674 IVIHFVCQLGRINEAHHLLLLMELKGYTP---------------------DVISYSTVIN 712
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ ++ L +M +G++ ++ TY ++ M + P
Sbjct: 713 GYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILP 772
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ VYTT +DG K G + A K F + + + T +I G C+IG + A +F
Sbjct: 773 DTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 832
Query: 279 HML----------------------------------MQNPGLTPDVVTYNIMIHGFCKE 304
H + M G +P+VVTY +I G CKE
Sbjct: 833 HEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 892
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G AN LL +M + GL+PN
Sbjct: 893 GDLDSANELLHEMWKIGLQPN 913
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 43/219 (19%)
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-- 205
C Y ++D F W ++ S I+I+ ++++ A SL E + + T
Sbjct: 522 CDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW-ERPKLNVTESF 580
Query: 206 ---YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC-- 260
++ L + D V+ + L + G + EA KVF + N+ VL++++CN
Sbjct: 581 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYL 640
Query: 261 ----------------------------------LIDGLCKIGRLKIAWDIFHMLMQNPG 286
+I +C++GR+ A + +LM+ G
Sbjct: 641 ARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLL-LLMELKG 699
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPDV++Y+ +I+G+C+ G+ K L+ M++ GL+PN
Sbjct: 700 YTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPN 738
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 174/409 (42%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G L+ PN+V +N+LI G C +G + A +LFKKL + P + TF
Sbjct: 222 GRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTF 281
Query: 62 NTL--ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+L + +FE + + + G+ +V NIID K GF M
Sbjct: 282 GSLVNGFCKMGMFEAIDLLLLEMKDRGLSV--NVQMYNNIIDARYKLGFDIKAKDTLKEM 339
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ PD+VT N + ++ G++EEA LLE I+R + PN TY L+ G+
Sbjct: 340 SENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEY 399
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ G D+ SY LI+G V+ A+++ M++ GI DA YN L
Sbjct: 400 TKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVL 459
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI----- 246
M N+ PD+ VY T +DG ++G + EA K+F I
Sbjct: 460 MNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGL 519
Query: 247 ------------GNHKC------------------VLTIETCNCLIDGLCKIGRLKIAWD 276
G K V I T + +IDG K +
Sbjct: 520 DPGVVGYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLK 579
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++++ P+VVTY +I+G+C++G+ + A L M GL+P+
Sbjct: 580 IFGLMVKQ-NCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPS 627
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 54/327 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LV 67
+C P++VT+N+LI C+ G + EA +L ++ PN +T+ L
Sbjct: 342 NCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTK 401
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A + EM + D+++ +I GL G MM++G+ PD NV
Sbjct: 402 ATDYLIEMSTSG---LEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNV 458
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKG 163
+ + L K GK+ A +L M+ +++ P+ Y TL+DGF KG
Sbjct: 459 LMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKG 518
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
V YN++I G+ K +++A+ LC + + PD +
Sbjct: 519 LDPGVVGYNVMIKGFSKSGMMDNAI-LCIDKMRRAHHV----------------PDIFTF 561
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+T IDG K + +K+F + C + T LI+G C+ G K+A +F M M+
Sbjct: 562 STIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSM-MR 620
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ GL P VVTY+I+I FCKE + KA
Sbjct: 621 SHGLKPSVVTYSILIGSFCKEAKLGKA 647
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 37/250 (14%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN--------------TLMD 155
P N + + L K ++E A+ L + MI RD + C N + D
Sbjct: 167 PSTYACNSLLNLLVKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIED 226
Query: 156 GF----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-- 209
G + W KGC ++ YN LI+GYCK VE A L +++ +G T+ +L
Sbjct: 227 GIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVN 286
Query: 210 -------FMAIN---------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
F AI+ + + +Y ID YK GF ++A + + C
Sbjct: 287 GFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEP 346
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T N LI+ C G ++ A + ++ GL P+ +TY ++HG+CK+G++ KA
Sbjct: 347 DLVTYNTLINHFCSRGEVEEAEKLLEQTIRR-GLAPNKLTYTPLVHGYCKQGEYTKATDY 405
Query: 314 LLDMEETGLE 323
L++M +GLE
Sbjct: 406 LIEMSTSGLE 415
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 58/347 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S V+L +L P+ + +L+ G G + EA +LF+ + DP V+ +
Sbjct: 467 GKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGY 526
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQGMR----PD 111
N + I G K G M +D+ R PD
Sbjct: 527 NVM-----------------------------IKGFSKSGMMDNAILCIDKMRRAHHVPD 557
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
+ T + + D K M + +M++++ PN TY +L++G+
Sbjct: 558 IFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFS 617
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S G + V +Y+ILI +CK+ + AVS ML + ++ L N
Sbjct: 618 MMRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNT- 676
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+ + + L++N + FS + NC++ LC+ +K A +
Sbjct: 677 -KATAVSREPNNLHENSRSMFE-DFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQL 734
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK-ANGLLLDMEETGLE 323
+ ++ GL D V++ +IHG C EG ++ N + D+ E L+
Sbjct: 735 RNKMLAF-GLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEGELQ 780
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 56/337 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLFE 73
TP+++T+ ++I G C G ++EA +LF ++ +P+ +TF L A + F
Sbjct: 826 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 885
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ C P+VVT T +IDGLCK+G M G++P++ T N + + L
Sbjct: 886 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G +EEA L+ +N +T TY TLMD + KG + +
Sbjct: 946 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N+L+NG+C +ED L ML++GI +ATT+N+L
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV------------------- 1046
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTI----ETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
K + +K +AI C + +T L+ G CK +K AW +F M+
Sbjct: 1047 --KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE-MKGK 1103
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + V TY+++I GF K + +A + M GL
Sbjct: 1104 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 1140
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 61/324 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ V + +LI G C G I A++ F +++ P+V+T+ + + A L
Sbjct: 792 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 851
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F EM F +PD VT T +I+G CK G M D G P+VVT + D
Sbjct: 852 FHEM---FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 908
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K+G ++ AN LL M W G + ++++YN ++NG CK
Sbjct: 909 LCKEGDLDSANELLHEM---------------------WKIGLQPNIFTYNSIVNGLCKS 947
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N+E+AV L E + G+ AD TY TL +D K+G + +A +
Sbjct: 948 GNIEEAVKLVGEFEAAGLNADTVTYTTL-----------------MDAYCKSGEMDKAQE 990
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + TI T N L++G C G L+ + + ++ G+ P+ T+N ++ +
Sbjct: 991 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQY 1049
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C + A + DM G+ P+
Sbjct: 1050 CIRNNLKAATAIYKDMCSRGVGPD 1073
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + + +TP+++++++++ G C G + + +L + + PN
Sbjct: 702 LGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 761
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ ++ + A F EM+ + G++ PD V T +IDG CK G
Sbjct: 762 YGSIIGLLCRICKLAEAEEAFSEMIRQ-GIL--PDTVVYTTLIDGFCKRGDIRAASKFFY 818
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M + + PDV+T + + G M EA L M + + P++ T+ L++G+
Sbjct: 819 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 878
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC +V +Y LI+G CK+ +++ A L EM G++ + TYN
Sbjct: 879 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 938
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV---FSAIGNHKCVLTIETCNCLIDG 264
++ ++GL K+G + EA+K+ F A G + +T T L+D
Sbjct: 939 SI-----------------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT---LMDA 978
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK G + A +I ++ GL P +VT+N++++GFC G + LL M G+ P
Sbjct: 979 YCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 1037
Query: 325 N 325
N
Sbjct: 1038 N 1038
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 47/275 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + ++ + +PN+VT+ +LI GLC EG + A L ++ PN+ T+
Sbjct: 878 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 937
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
N++ L EE +V EF D VT T ++D CK G M+
Sbjct: 938 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 997
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++P +VT NV+ + G +E+ LL M+ + + PN T+N+L+ +
Sbjct: 998 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 1057
Query: 158 --AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A + S+G D +Y L+ G+CK RN+++A L +EM +G +TY+ L
Sbjct: 1058 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL-- 1115
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
I G K LEA +VF +
Sbjct: 1116 ---------------IKGFLKRKKFLEAREVFDQM 1135
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 87/321 (27%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRPDVVTLN 116
A +FE+M+N +G++ D +C + L KD + + G+ +V + N
Sbjct: 637 ARRVFEKMLN-YGLVLSVD--SCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 693
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + + G+++EA+ LL +M + P DV SY+ ++N
Sbjct: 694 IVIHFVCQLGRIKEAHHLLLLMELKGYTP---------------------DVISYSTVVN 732
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ ++ L M +G++ ++ Y ++ M + P
Sbjct: 733 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 792
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ VYTT IDG K G + A K F + + + T +I G C+IG + A +F
Sbjct: 793 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 852
Query: 279 HML----------------------------------MQNPGLTPDVVTYNIMIHGFCKE 304
H + M G +P+VVTY +I G CKE
Sbjct: 853 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 912
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G AN LL +M + GL+PN
Sbjct: 913 GDLDSANELLHEMWKIGLQPN 933
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 43/219 (19%)
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-- 205
C Y ++D F W ++ S I+I+ ++++ A SL E + + T
Sbjct: 542 CDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW-ERPKLNVTDSF 600
Query: 206 ---YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC-- 260
++ L + D V+ + L G + EA +VF + N+ VL++++CN
Sbjct: 601 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYL 660
Query: 261 ----------------------------------LIDGLCKIGRLKIAWDIFHMLMQNPG 286
+I +C++GR+K A + +LM+ G
Sbjct: 661 TRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKG 719
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPDV++Y+ +++G+C+ G+ K L+ M+ GL+PN
Sbjct: 720 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 758
>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 915
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 155/352 (44%), Gaps = 60/352 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L +L P++VT+N+LI G C +G A + + C PN T+N L L
Sbjct: 366 ILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFC 425
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A++L +M+ +P+VVT +I G CK+G M + G+ P
Sbjct: 426 RGKNIHKAMSLLHKMLER---KLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVP 482
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D T +V D L K G +EEA L E + ++ + N Y+TL+DG+
Sbjct: 483 DEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLL 542
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
S GC + +YN LI+GYCK++N ++A L M+ ++
Sbjct: 543 DKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKR-----------------DI 585
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P + YT ID L K+ +A +F + G+H V I C GRLK
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY---TAFIHAYCSHGRLKD 642
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ M G+ PD + Y + I + + G A G+L M E G EP+
Sbjct: 643 A-EVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPS 693
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 168/375 (44%), Gaps = 55/375 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + + +I+ + + + T+ SLI G C + A +F + C N ++
Sbjct: 217 LGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVS 276
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ L AL LF +M + C P V T T II LC+ G
Sbjct: 277 YTNLIHGFCEARRVDEALKLFSQMHEDN---CWPTVRTYTVIIFALCQLGRKTEALNMFK 333
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M ++ +P+V T V+ +L +D ++A +L M+++ + P+ TYN L+DG+
Sbjct: 334 EMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKG 393
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S C + +YN LI G+C+ +N+ A+SL +ML ++ + TYN
Sbjct: 394 LSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYN 453
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M + + PD Y+ +ID L K G V EA +F ++
Sbjct: 454 ILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEK 513
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG CK+G++ + ++ + G P+ +TYN +I G+CKE ++
Sbjct: 514 GIKANEVIYSTLIDGYCKVGKVSDGRFLLDKML-SAGCVPNSITYNSLIDGYCKEKNFKE 572
Query: 310 ANGLLLDMEETGLEP 324
A L+ M + +EP
Sbjct: 573 ARLLVDIMIKRDIEP 587
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 63/326 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
TPN+ T N+++ G C G ++EA K+ + T+ +L L A
Sbjct: 201 TPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANA 260
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMT 119
+F M N+ C + V+ TN+I G C + +D+ ++ P V T V+
Sbjct: 261 IFLSMPNKG---CLRNEVSYTNLIHGFC-EARRVDEALKLFSQMHEDNCWPTVRTYTVII 316
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L + G+ EA + + M ++ PN V++Y +LI C
Sbjct: 317 FALCQLGRKTEALNMFKEMTEKHCQPN---------------------VHTYTVLICSLC 355
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+D N +DA + ML +G+ TYN L IDG K G A
Sbjct: 356 EDSNFDDAKKILNGMLEKGLIPSVVTYNAL-----------------IDGYCKKGLSASA 398
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+++ S + ++ C T N LI G C+ + A + H +++ L P+VVTYNI+IH
Sbjct: 399 LEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERK-LQPNVVTYNILIH 457
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G CKEG A LL M E+GL P+
Sbjct: 458 GQCKEGDLGSAYKLLSLMNESGLVPD 483
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 33/236 (13%)
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK----GCRHD 167
LS+ ++E + M+ V PN T NT+++G+ + SK G D
Sbjct: 179 LSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLD 238
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
++Y LI GYC+++NV+ A ++ M ++G + +Y L
Sbjct: 239 TFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFS 298
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M +N P YT I L + G EA+ +F + C + T LI LC+
Sbjct: 299 QMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDS 358
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A I + +++ GL P VVTYN +I G+CK+G A +L ME PN
Sbjct: 359 NFDDAKKILNGMLEK-GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPN 413
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 122/324 (37%), Gaps = 57/324 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S G LL ++L + PN +T+NSLI G C E EA L + +P T
Sbjct: 532 VGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADT 591
Query: 61 FNTLA--LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+ L L+ + F++ + F M+ G PDV
Sbjct: 592 YTILIDNLLKDDEFDQAHDMFDQ---------------------MLSTGSHPDVFIYTAF 630
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
G++++A L+ M + + P+T Y +D + +
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFG----------------- 673
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS----HVYTTYIDGLYKNG 234
+++ A + + M G TY+ L ++N P + G+ N
Sbjct: 674 ----SIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASND 729
Query: 235 F--------VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
F + +F + H C T I GLCK+G L++A +F M+ G
Sbjct: 730 FSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDH-MKEKG 788
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKA 310
+P+ YN ++ C+ G + +A
Sbjct: 789 QSPNEDIYNSLLGCSCQLGLYGEA 812
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPP--------- 218
YN+L+ + +++ S+ EML + + + T NT+ + + NV
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231
Query: 219 ------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
D+ YT+ I G +N V A +F ++ N C+ + LI G C+ R+
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F M P V TY ++I C+ G+ +A + +M E +PN
Sbjct: 292 EALKLFSQ-MHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPN 343
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA- 68
L G++ PN T+ I GLC G + A RLF + PN +N+L +
Sbjct: 745 LFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSC 804
Query: 69 -LNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L L+ E + ++ + P + +C ++ GL +G + D +
Sbjct: 805 QLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEM 864
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
V+ D L K G ++ + L +M + + TY+ L++GF
Sbjct: 865 VWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 158/389 (40%), Gaps = 92/389 (23%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N +T+N+LI G C G + A +L ++ P+V+T +++ A+ F
Sbjct: 104 NHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF 163
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
E V C PD V ++ GLCK M ++G+ PDVVT N + D L
Sbjct: 164 RESVE-----CAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGL 218
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K +MEEA LLE M++R V PN TYNTL+ G+ G DV
Sbjct: 219 CKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDV 278
Query: 169 YSYNILINGYCKDRNVE-----------------------------------DAVSLCRE 193
++N LI+G+C+ ++ +A L E
Sbjct: 279 VTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSE 338
Query: 194 MLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
M GI D TYN+L M V PD Y T L K+
Sbjct: 339 MDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSER 398
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
EA + + + + + T N L++GLC RL A + +M+ G P TY
Sbjct: 399 FDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL-AVMRRVGCDPAASTYE 457
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+++ G CK G+ A +L+ M G++P
Sbjct: 458 VLVTGLCKAGRVDDAKEVLVMMVSEGIQP 486
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 146/336 (43%), Gaps = 53/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFK-KLNVFCCDPNVITFNTL---------ALVALNL 71
N T N L++ L R +A ++F+ +L CD N IT+NTL A L
Sbjct: 68 NNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FMMDQGMRPDVVTLNVMTDNLS 123
EM E G PDVVT ++I+ LC G F PD V N++ L
Sbjct: 128 LAEM-KERGH--SPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHGLC 184
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K ++ EA ++E M +R + P+ TYN+L+DG + R ++
Sbjct: 185 KANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLV 244
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN LI GYCK A L M+ G D T+N+L I G
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL-----------------ISG 287
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ + +A +V + C + T N LI GLC GR A ++ M G+ P
Sbjct: 288 FCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSE-MDGRGILP 346
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D++TYN +I FC+ Q ++A + M E G+ P+
Sbjct: 347 DIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPD 382
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 36/233 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ R++ S P++VTFNSLI G C + +I +A + + C PN++T+N L
Sbjct: 265 LIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLC 324
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
A A L EM + G++ PD++T ++I C++ M+++G+ P
Sbjct: 325 DAGRANEACELLSEM-DGRGIL--PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIP 381
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D ++ + L K + +EA LL+ M PN T+N+LM+G +
Sbjct: 382 DGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLL 441
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GC +Y +L+ G CK V+DA + M+SEGI+ ++ T+
Sbjct: 442 AVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTI 494
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 39/171 (22%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F LL + + PN+ TFNSL++GLC R+ EA L + CDP T+
Sbjct: 398 RFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYE 457
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
L + GLCK G M+ +G++P V
Sbjct: 458 VL-----------------------------VTGLCKAGRVDDAKEVLVMMVSEGIQPLV 488
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ + L+++GK + A + ++ + +Y L++ +G
Sbjct: 489 SSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLEFVKVLREG 539
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 50/358 (13%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLF 72
+ P++VT+ ++ GLC G++ EA +F+++ PN ++ TL N+
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174
Query: 73 EEMVNEFGVICKP---DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
E V + ++ + DVV T ++DGL K G ++++ + P+ VT + +
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
D K G + + LL+ M ++ + PN Y++++DG+ +
Sbjct: 235 DGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNIL 294
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V+ Y LI+GY K A+ L +EM S G+ + ++
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PD YT+ +DG +K G +A + + + N LI+GL K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G K + FH M+ GL PD T+N MI+ +CKEG A LL +M+ GL+PN
Sbjct: 415 LG--KYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPN 470
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 61/372 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S LL + P++VT+N+L+ G C G + A +L ++++ +PNVIT+
Sbjct: 31 GEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITY 90
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL AL +++EM + V PDVVT T I++GLCK G
Sbjct: 91 TTLIDAYCKSQCLEDALYMYDEMTVKSLV---PDVVTYTCIMNGLCKSGKVEEAKSVFRE 147
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWS 161
M + G+ P+ + + D+L K+G + EA L M+ R + + Y LMDG F
Sbjct: 148 MEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGM 207
Query: 162 KGCRHDVY-------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
D++ +Y+ LI+G+CK +V L +EM + I + Y++
Sbjct: 208 ANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSS 267
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYK---NGFVLEAMKVFSAIG 247
+ M N+ P+ VY T IDG +K G L+ K + G
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ I++ ++ L + GR++ A ++F +M GL PD V Y M+ GF K G+
Sbjct: 328 LEENNFVIDS---FVNNLKRSGRMEEADELFKDMMSR-GLLPDRVNYTSMMDGFFKAGKE 383
Query: 308 QKANGLLLDMEE 319
A + +M E
Sbjct: 384 SDAFNIAQEMTE 395
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 49/348 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNEFG 80
FN LI G C G I A L + + P+++T+NTL + L ++++ E
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 81 VI-CKPDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVMTDNLSKDGKME 129
++ +P+V+T T +ID CK +M D+ + PDVVT + + L K GK+E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EA + M + V PN +Y TL+D +G DV Y L+
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G K +A + + +L E + + TY+ L M ++
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ VY++ +DG K G + EAM V + + + LIDG K + IA D+
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M++ GL + + ++ + G+ ++A+ L DM GL P+
Sbjct: 320 FKE-MKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 159/394 (40%), Gaps = 83/394 (21%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
+L PN VT+++LI G C G + + L +++ PNVI ++++ L
Sbjct: 218 LLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Query: 72 FEEMVNEFGVICK----PDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVVTLNV 117
E ++ + + P+V +IDG K D F M +G+ + ++
Sbjct: 278 LNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+NL + G+MEEA+ L + M+ R + P+ Y ++MDGF K
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397
Query: 164 CRHDVYSYNILING----------------------------------YCKDRNVEDAVS 189
DV +YN+LING YCK+ N+ +A+
Sbjct: 398 SGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALK 457
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
L EM S G++ ++ T N L M + P + +D
Sbjct: 458 LLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASS 517
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K+ + + L + T N LI C++G ++ A +F +M G+ D+
Sbjct: 518 KSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADI 576
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +IHG+C +KA + M G+ PN
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPN 610
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWSK 162
+R V NV+ D ++G++ A LLE M P+ TYNTLM+GF + +K
Sbjct: 13 IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY------- 206
+V +Y LI+ YCK + +EDA+ + EM + + D TY
Sbjct: 73 KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
Query: 207 ---------NTLFMAINNVP--PDSHVYTTYIDGLYKNG-----FVLEAMKVFSAIGNHK 250
++F + V P+ Y T ID L+K G FVL+ V IG
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V T L+DGL K G A D+F +L++ L P+ VTY+ +I G CK G K
Sbjct: 193 VVYT-----ALMDGLFKAGMANNAEDMFQVLLEE-SLVPNCVTYSALIDGHCKLGDVNKG 246
Query: 311 NGLLLDMEETGLEPN 325
LL +MEE + PN
Sbjct: 247 ELLLQEMEEKHIFPN 261
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 145/357 (40%), Gaps = 55/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S F + + ++V +N LI GL G+ E+ + P+ TF
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATF 439
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ AL L EM +G+ KP+ +TC ++ LC G
Sbjct: 440 NTMINAYCKEGNLGNALKLLNEM-KSYGL--KPNSITCNILVQRLCAAGEIEKTMDLLND 496
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G P T + D SK + + + ++ V + TYNTL+ F
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGM 556
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D+ +YN LI+GYC +++ A ++ +ML+EG+ + TYN
Sbjct: 557 IRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + GL + EA + + + V T + L+ G KI
Sbjct: 617 L-----------------LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKI 659
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +K ++ M G P TYN++I F K + +A L+ +M+ G+ PN
Sbjct: 660 GNMKECVKLY-CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 38/277 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++ T+N+LI C G I A +FK + ++IT+N L + + + F V
Sbjct: 540 DLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNAL-IHGYCISSHLKKAFAV 598
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ M+ +G+ P+V T N++ LS ++EA L+ M +R
Sbjct: 599 HSQ------------------MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKER 640
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ PN TY+ L+ G +KG +YN+LI+ + K + + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L +EM GI +++TY+ L + + + K + EA ++F +
Sbjct: 701 KELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS-----LKRSYQAEAKRLFEEMN 755
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ T C+ L K G+ A I + L +
Sbjct: 756 EKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK 792
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 166/371 (44%), Gaps = 49/371 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++L PN+VT+N L+ GLC GR+ E L ++ + P+ T+
Sbjct: 244 GDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTY 303
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVV----TCTNIIDGLCKDG----------FMMD 105
+ L L M++ FG K V+ TC+ +++GLCKDG ++
Sbjct: 304 SILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVH 363
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G+ P N + + + ++ A + E M R + P+ TYN L++G
Sbjct: 364 TGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITE 423
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G V ++N LI+ Y + +E ++ +M +GI+++ ++ ++
Sbjct: 424 AEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVK 483
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
A +V P++ VY + ID ++G +A + + +
Sbjct: 484 AFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSA 543
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+I T N L+ GLCK ++ A ++ + L N GL PDVV+YN +I C +G +A L
Sbjct: 544 SIFTYNLLLKGLCKNSQIDEAEELIYNLT-NQGLRPDVVSYNTIISACCNKGDTDRALEL 602
Query: 314 LLDMEETGLEP 324
L +M + + P
Sbjct: 603 LQEMHKYDIRP 613
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 163/378 (43%), Gaps = 57/378 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
+GR + G ++ + P+ +N ++ G + EA + +++ + P+
Sbjct: 136 VGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDA 195
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------- 101
++N + AL +F+EMV+ GV P+ +T +IDG K G
Sbjct: 196 FSYNVVIAGLWRSGKGSDALKVFDEMVDR-GV--APNQITYNTMIDGHVKGGDLEAGFRL 252
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M+ G +P+VVT NV+ L + G+M+E L++ M + P+ TY+ L DG
Sbjct: 253 RDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTR 312
Query: 160 --------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG Y+ +IL+NG CKD V A + ++ G+
Sbjct: 313 TGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAI 372
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
YNTL M ++ PD Y I+GL K + EA + +
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEME 432
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
++ET N LID + G+L+ + + MQ+ G+ +V+++ ++ FCK G+
Sbjct: 433 KSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSD-MQDKGIKSNVISFGSVVKAFCKNGKI 491
Query: 308 QKANGLLLDMEETGLEPN 325
+A +L DM + PN
Sbjct: 492 PEAVAILDDMIHKDVVPN 509
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F+L+ ++ S + ++ T+N L+KGLC +I EA L L P+V+++
Sbjct: 524 GGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSY 583
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NT+ N K D ++ + K +RP + T + +
Sbjct: 584 NTIISACCN-------------KGDTDRALELLQEMHK------YDIRPTLRTYHPLLSA 624
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
L G++ + CL + M+ ++V P++ Y T
Sbjct: 625 LGSAGRVHDMECLYQHMVHKNVEPSSSIYGT 655
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 48/334 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF---EE 74
TP++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L + EE
Sbjct: 227 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 286
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLS 123
++ E G C P+VVT +I LC+ G +++Q G P+ ++ N +
Sbjct: 287 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFC 346
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K KM++A L++M+ R P+ +YNTL+ KGC +
Sbjct: 347 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 406
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYN +I+G K ++A+ L EM+S+G++ D TY+T+ G
Sbjct: 407 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA-----------------G 449
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + + +A++ F + + N +I GLCK A D+F ++ N G P
Sbjct: 450 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMP 508
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ TY I+I G EG ++A LL ++ G E
Sbjct: 509 NESTYTILIEGLAYEGLIKEARDLLDELCSRGEE 542
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 175/370 (47%), Gaps = 53/370 (14%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNV- 58
ASG R+L +C P+++ +N+++ G C G++ A R + V + CD +
Sbjct: 110 ASGRTAEARRVLAAC-GPDVMAYNAMMAGYCGAGQVDAARRWCAERAVERDAYTCDTLIR 168
Query: 59 -ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQG 107
+ AL + +EM+ C PDVVT T +++ CK G+ M D+G
Sbjct: 169 GLCGRGRTANALAVLDEMLRRR---CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 225
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW---- 160
PD+VT NV+ + + ++G++++A L+ + PNT +YN ++ G W
Sbjct: 226 CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 285
Query: 161 -------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
KGC +V ++N+LI+ C+ VE A+ + ++ G ++ +YN L
Sbjct: 286 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAF 345
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M PD Y T + L ++G V A+++ + + C +
Sbjct: 346 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVL 405
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ N +IDGL K G+ K A ++ + M + GL PD++TY+ + G C+E + + A
Sbjct: 406 ISYNTVIDGLTKAGKTKEALELLNE-MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFG 464
Query: 316 DMEETGLEPN 325
+++ G+ PN
Sbjct: 465 KVQDMGIRPN 474
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 155/352 (44%), Gaps = 55/352 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEM 75
T ++LI+GLC GR A + ++ C P+V+T+ L A+ L +EM
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKD 125
++ C PD+VT +++G+C++G + D G P+ V+ N++ L
Sbjct: 222 RDKG---CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTA 278
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
+ E+A L+ M Q+ PN T+N L+ GC + SY
Sbjct: 279 ERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSY 338
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N L++ +CK + ++ A++ M+S G D +YNTL A+
Sbjct: 339 NPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD 398
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P Y T IDGL K G EA+++ + + + I T + + GLC+ R++
Sbjct: 399 KGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIED 458
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A F + Q+ G+ P+ V YN +I G CK + A L M G PN
Sbjct: 459 AIRAFGKV-QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPN 509
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 53/270 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L+G + PN+VTFN LI LC +G + A + +++ + C PN +++N L
Sbjct: 287 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFC 346
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ + MV+ C PD+V+ ++ LC+ G + D+G P
Sbjct: 347 KQKKMDKAMAFLDLMVSRG---CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 403
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+++ N + D L+K GK +EA LL M+ + + P+ TY+T+ G +
Sbjct: 404 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 463
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G R + YN +I G CK R A+ L +M N
Sbjct: 464 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDL-----------------FAYMIGNGC 506
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I+GL G + EA + +
Sbjct: 507 MPNESTYTILIEGLAYEGLIKEARDLLDEL 536
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 125/329 (37%), Gaps = 70/329 (21%)
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLNVMT 119
+LV +E + G +PD TC +I L G + PDV+ N M
Sbjct: 76 SLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMM 135
Query: 120 DNLSKDGKMEEAN--------------------------------CLLEVMIQRDVNPNT 147
G+++ A +L+ M++R P+
Sbjct: 136 AGYCGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDV 195
Query: 148 CTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TY L++ S KGC D+ +YN+++NG C++ V+DA+ +
Sbjct: 196 VTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKN 255
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
+ S G + +YN + M PP+ + I L + G
Sbjct: 256 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 315
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V A++V I + C + N L+ CK ++ A F LM + G PD+V+YN
Sbjct: 316 VEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAM-AFLDLMVSRGCYPDIVSYN 374
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ C+ G+ A LL +++ G P
Sbjct: 375 TLLTALCRSGEVDVAVELLHQLKDKGCAP 403
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 89/223 (39%), Gaps = 47/223 (21%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
++ RPD T + LS G+ EA +L
Sbjct: 89 LVGSARRPDAGTCAALIKKLSASGRTAEARRVL--------------------------A 122
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
C DV +YN ++ GYC V+ A C E + DA T +TL
Sbjct: 123 ACGPDVMAYNAMMAGYCGAGQVDAARRWCAE---RAVERDAYTCDTL------------- 166
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I GL G A+ V + +CV + T L++ CK K A + M
Sbjct: 167 ----IRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDE-M 221
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G TPD+VTYN++++G C+EG+ A L ++ G EPN
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 264
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T++++ GLC E RI +A R F K+ PN + +
Sbjct: 419 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 478
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
N + L A++LF M+ G C P+ T T +I+GL +G + +
Sbjct: 479 NAIILGLCKRRETHSAIDLFAYMI---GNGCMPNESTYTILIEGLAYEGLIKE 528
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 150/325 (46%), Gaps = 64/325 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P VT+NSLI GLC R EA L +++ C P++ T+ TL + AL +
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTD 120
FE++V G +PDVVT + +IDGLCK+G + + P+ VT N +
Sbjct: 112 FEQLVAR-GF--RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLIS 168
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ GKM+EA LLE M + +P+ TY TLM NG+CK
Sbjct: 169 GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM---------------------NGFCK 207
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
++DA L +M +G+ + T+ +L +DGL + + +A+
Sbjct: 208 LARLDDAYDLLNQMTRKGLTPNVVTFTSL-----------------MDGLCRENRLSDAV 250
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + C T+ T N ++DG C++ +L+ A M P P+VV++NIMI G
Sbjct: 251 HILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDCP---PNVVSFNIMIRG 307
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
CK + +A L+ + P+
Sbjct: 308 LCKVNRSSEAMELVEEARRRRCNPD 332
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ LL R+ + +P++VT+ +L+ G C R+ +A L ++ PNV+T
Sbjct: 173 MGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVT 232
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-------DGFMMDQ- 106
F +L L N + V+ G + C P V T I+DG C+ FM+++
Sbjct: 233 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEM 292
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
P+VV+ N+M L K + EA L+E +R NP
Sbjct: 293 DCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNP--------------------- 331
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTL 209
DV Y +I+ C+++ V++A + R+ML E G ++ TY+T
Sbjct: 332 DVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYSTF 375
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 23/181 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R + LL ++ TPN+VTF SL+ GLC E R+ +A + ++ C P V T
Sbjct: 208 LARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYT 267
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQGM 108
+NT+ +N EE M+ E C P+VV+ +I GLCK ++++
Sbjct: 268 YNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 325
Query: 109 R----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKG 163
R PDVV + D L ++ K++EA + M++ PN+ TY+T F +W
Sbjct: 326 RRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST----FDYWPLQ 381
Query: 164 C 164
C
Sbjct: 382 C 382
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+A+ + + V T T N LI GLCK R A+D+ ++ + G PD+ TY +I GFCK
Sbjct: 43 AAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS-GCIPDIFTYTTLITGFCK 101
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+ A + + G P+
Sbjct: 102 SKKSDDALRVFEQLVARGFRPD 123
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 50/358 (13%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLF 72
+ P++VT+ ++ GLC G++ EA +F+++ PN ++ TL N+
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174
Query: 73 EEMVNEFGVICKP---DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
E V + ++ + DVV T ++DGL K G ++++ + P+ VT + +
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
D K G + + LL+ M ++ + PN Y++++DG+ +
Sbjct: 235 DGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNIL 294
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V+ Y LI+GY K A+ L +EM S G+ + ++
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PD YT+ +DG +K G +A + + + N LI+GL K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G K + FH M+ GL PD T+N MI+ +CKEG A LL +M+ GL+PN
Sbjct: 415 LG--KYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPN 470
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 163/354 (46%), Gaps = 61/354 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+N+L+ G C G + A +L ++++ +PNVIT+ TL AL
Sbjct: 49 APDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALY 108
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+++EM + V PDVVT T I++GLCK G M + G+ P+ + + D
Sbjct: 109 MYDEMTVKSLV---PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLID 165
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWSKGCRHDVY---------- 169
+L K+G + EA L M+ R + + Y LMDG F D++
Sbjct: 166 SLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVP 225
Query: 170 ---SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+Y+ LI+G+CK +V L +EM + I + Y+++
Sbjct: 226 NCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVM 285
Query: 211 --MAINNVPPDSHVYTTYIDGLYK---NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M N+ P+ VY T IDG +K G L+ K + G + I++ ++ L
Sbjct: 286 RKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS---FVNNL 342
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ GR++ A ++F +M GL PD V Y M+ GF K G+ A + +M E
Sbjct: 343 KRSGRMEEADELFKDMMSR-GLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTE 395
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 49/348 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNEFG 80
FN LI G C G I A L + + P+++T+NTL + L ++++ E
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 81 VI-CKPDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVMTDNLSKDGKME 129
++ +P+V+T T +ID CK +M D+ + PDVVT + + L K GK+E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EA + M + V PN +Y TL+D +G DV Y L+
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G K +A + + +L E + + TY+ L M ++
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ VY++ +DG K G + EAM V + + + LIDG K + IA D+
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M++ GL + + ++ + G+ ++A+ L DM GL P+
Sbjct: 320 FKE-MKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 83/394 (21%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
+L PN VT+++LI G C G + + L +++ PNVI ++++ L
Sbjct: 218 LLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Query: 72 FEEMVNEFGVICK----PDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVVTLNV 117
E ++ + + P+V +IDG K D F M +G+ + ++
Sbjct: 278 LNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+NL + G+MEEA+ L + M+ R + P+ Y ++MDGF K
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397
Query: 164 CRHDVYSYNILING----------------------------------YCKDRNVEDAVS 189
DV +YN+LING YCK+ N+ +A+
Sbjct: 398 SGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALK 457
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
L EM S G++ ++ T N L M + P + +D
Sbjct: 458 LLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASS 517
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K+ + + + L + T N LI C++G ++ A +F +M G+ D+
Sbjct: 518 KSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADI 576
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +IHG+C +KA + M G+ PN
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPN 610
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWSK 162
+R V NV+ D ++G++ A LLE M P+ TYNTLM+GF + +K
Sbjct: 13 IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY------- 206
+V +Y LI+ YCK + +EDA+ + EM + + D TY
Sbjct: 73 KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
Query: 207 ---------NTLFMAINNVP--PDSHVYTTYIDGLYKNG-----FVLEAMKVFSAIGNHK 250
++F + V P+ Y T ID L+K G FVL+ V IG
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V T L+DGL K G A D+F +L++ L P+ VTY+ +I G CK G K
Sbjct: 193 VVYT-----ALMDGLFKAGMANNAEDMFQVLLEE-SLVPNCVTYSALIDGHCKLGDVNKG 246
Query: 311 NGLLLDMEETGLEPN 325
LL +MEE + PN
Sbjct: 247 ELLLQEMEEKHIFPN 261
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 146/357 (40%), Gaps = 55/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S F + + ++V +N LI GL G+ E+ + P+ TF
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATF 439
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ AL L EM +G+ KP+ +TC ++ LC G
Sbjct: 440 NTMINAYCKEGNLGNALKLLNEM-KSYGL--KPNSITCNILVQRLCAAGEIEKTMDLLND 496
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G P T + D SK + + + + ++ V + TYNTL+ F
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGM 556
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D+ +YN LI+GYC +++ A ++ +ML+EG+ + TYN
Sbjct: 557 IRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + GL + EA + + + V T + L+ G KI
Sbjct: 617 L-----------------LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKI 659
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +K ++ M G P TYN++I F K + +A L+ +M+ G+ PN
Sbjct: 660 GNMKECVKLY-CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 38/277 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++ T+N+LI C G I A +FK + ++IT+N L + + + F V
Sbjct: 540 DLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNAL-IHGYCISSHLKKAFAV 598
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ M+ +G+ P+V T N++ LS ++EA L+ M +R
Sbjct: 599 HSQ------------------MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKER 640
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ PN TY+ L+ G +KG +YN+LI+ + K + + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L +EM GI +++TY+ L + + + K + EA ++F +
Sbjct: 701 KELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS-----LKRSYQAEAKRLFEEMN 755
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ T C+ L K G+ A I + L +
Sbjct: 756 EKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK 792
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 162/358 (45%), Gaps = 50/358 (13%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLF 72
+ P++VT+ ++ GLC G++ EA +F+++ PN ++ TL N+
Sbjct: 115 VKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVA 174
Query: 73 EEMVNEFGVICKP---DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
E V + ++ + DVV T ++DGL K G ++++ + P+ VT + +
Sbjct: 175 EAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
D K G + + LL+ M ++ + PN Y++++DG+ +
Sbjct: 235 DGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNIL 294
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V+ Y LI+GY K A+ L +EM S G+ + ++
Sbjct: 295 PNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADEL 354
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PD YT+ +DG +K G +A + + + N LI+GL K
Sbjct: 355 FKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFK 414
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G K + FH M+ GL PD T+N MI+ +CKEG A LL +M+ GL+PN
Sbjct: 415 LG--KYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPN 470
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 61/372 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S LL + P++VT+N+L+ G C G + A +L ++++ +PNVIT+
Sbjct: 31 GEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITY 90
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL AL +++EM + V PDVVT T I++GLCK G
Sbjct: 91 TTLIDAYCKSQCLEDALYMYDEMTVKSLV---PDVVTYTCIMNGLCKSGKVEEAKSVFRE 147
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-FAWWS 161
M + G+ P+ + + D+L K+G + EA L M+ R + + Y LMDG F
Sbjct: 148 MEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDGLFKAGM 207
Query: 162 KGCRHDVY-------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
D++ +Y+ LI+G+CK +V L +EM + I + Y++
Sbjct: 208 ANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSS 267
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYK---NGFVLEAMKVFSAIG 247
+ M N+ P+ VY T IDG +K G L+ K + G
Sbjct: 268 IVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRG 327
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ I++ ++ L + GR++ A ++F +M GL PD V Y M+ GF K G+
Sbjct: 328 LEENNFVIDS---FVNNLKRSGRMEEADELFKDMMSR-GLLPDRVNYTSMMDGFFKAGKE 383
Query: 308 QKANGLLLDMEE 319
A + +M E
Sbjct: 384 SDAFNIAQEMTE 395
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 49/348 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNEFG 80
FN LI G C G I A L + + P+++T+NTL + L ++++ E
Sbjct: 20 FNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEIS 79
Query: 81 VI-CKPDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVMTDNLSKDGKME 129
++ +P+V+T T +ID CK +M D+ + PDVVT + + L K GK+E
Sbjct: 80 LVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVE 139
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EA + M + V PN +Y TL+D +G DV Y L+
Sbjct: 140 EAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALM 199
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G K +A + + +L E + + TY+ L M ++
Sbjct: 200 DGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIF 259
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ VY++ +DG K G + EAM V + + + LIDG K + IA D+
Sbjct: 260 PNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDL 319
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F M++ GL + + ++ + G+ ++A+ L DM GL P+
Sbjct: 320 FKE-MKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 160/394 (40%), Gaps = 83/394 (21%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
+L PN VT+++LI G C G + + L +++ PNVI ++++ L
Sbjct: 218 LLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGL 277
Query: 72 FEEMVNEFGVICK----PDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVVTLNV 117
E ++ + + P+V +IDG K D F M +G+ + ++
Sbjct: 278 LNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+NL + G+MEEA+ L + M+ R + P+ Y ++MDGF K
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397
Query: 164 CRHDVYSYNILING----------------------------------YCKDRNVEDAVS 189
DV +YN+LING YCK+ N+ +A+
Sbjct: 398 SGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALK 457
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
L EM S G++ ++ T N L M + P + +D
Sbjct: 458 LLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDASS 517
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K+ + + + L + T N LI C++G ++ A +F +M G+ D+
Sbjct: 518 KSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATLVFKDMM-GKGILADI 576
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +IHG+C +KA + M G+ PN
Sbjct: 577 ITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPN 610
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 117/255 (45%), Gaps = 43/255 (16%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWSK 162
+R V NV+ D ++G++ A LLE M P+ TYNTLM+GF + +K
Sbjct: 13 IRRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAK 72
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY------- 206
+V +Y LI+ YCK + +EDA+ + EM + + D TY
Sbjct: 73 KLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
Query: 207 ---------NTLFMAINNVP--PDSHVYTTYIDGLYKNG-----FVLEAMKVFSAIGNHK 250
++F + V P+ Y T ID L+K G FVL+ V IG
Sbjct: 133 CKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDV 192
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V T L+DGL K G A D+F +L++ L P+ VTY+ +I G CK G K
Sbjct: 193 VVYT-----ALMDGLFKAGMANNAEDMFQVLLEE-SLVPNCVTYSALIDGHCKLGDVNKG 246
Query: 311 NGLLLDMEETGLEPN 325
LL +MEE + PN
Sbjct: 247 ELLLQEMEEKHIFPN 261
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 146/357 (40%), Gaps = 55/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S F + + ++V +N LI GL G+ E+ + P+ TF
Sbjct: 381 GKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGK-YESESFHTGMRQLGLAPDSATF 439
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ AL L EM +G+ KP+ +TC ++ LC G
Sbjct: 440 NTMINAYCKEGNLGNALKLLNEM-KSYGL--KPNSITCNILVQRLCAAGEIEKTMDLLND 496
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G P T + D SK + + + + ++ V + TYNTL+ F
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGM 556
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG D+ +YN LI+GYC +++ A ++ +ML+EG+ + TYN
Sbjct: 557 IRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + GL + EA + + + V T + L+ G KI
Sbjct: 617 L-----------------LGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKI 659
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +K ++ M G P TYN++I F K + +A L+ +M+ G+ PN
Sbjct: 660 GNMKECVKLY-CEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 38/277 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++ T+N+LI C G I A +FK + ++IT+N L + + + F V
Sbjct: 540 DLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNAL-IHGYCISSHLKKAFAV 598
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ M+ +G+ P+V T N++ LS ++EA L+ M +R
Sbjct: 599 HSQ------------------MLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKER 640
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ PN TY+ L+ G +KG +YN+LI+ + K + + A
Sbjct: 641 GLVPNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQA 700
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
L +EM GI +++TY+ L + + + K + EA ++F +
Sbjct: 701 KELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKS-----LKRSYQAEAKRLFEEMN 755
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ T C+ L K G+ A I + L +
Sbjct: 756 EKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK 792
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 165/369 (44%), Gaps = 56/369 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
++ G++ ++ P+ T + K C +GR+ +A +++ + N++ ++ +
Sbjct: 204 MVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCY 263
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRP---- 110
A + E + + P+VVT T ++ G CKDG M + + M+
Sbjct: 264 CGMGWTEDARRILESLQRKG---LSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDI 320
Query: 111 --DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
D V +M + + G+M++A + M ++ N YNT+++G +
Sbjct: 321 VVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQK 380
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----- 209
G R D YSYN LI+GYC++ ++ A +CR M+ G+ A TYNTL
Sbjct: 381 VLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFC 440
Query: 210 -------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M V P+ +T +DGL+K G +A+ ++ +
Sbjct: 441 SLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVI 500
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N +I+GLCKIGR+ A ++ M+ PD +TY + G+CK GQ A L+
Sbjct: 501 TFNTVINGLCKIGRMAEAEELLDR-MKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559
Query: 317 MEETGLEPN 325
ME G P+
Sbjct: 560 MEHLGFAPS 568
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 165/376 (43%), Gaps = 74/376 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L L N++TFN++I GLC GR+ EA L ++ C P+ +T+
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTY 537
Query: 62 NTL------------ALVALNLFE--------EMVNEF---GVICK-------------- 84
TL A +N E EM N F I K
Sbjct: 538 RTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSA 597
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P++VT +I G CK+G M++ GM P+V + + K+GK++E
Sbjct: 598 RGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDE 657
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAW----WSKGCRHDV-YSYNILINGYCKDRNVE 185
AN +L+ ++ D+ P +D + + G H +N++I G CK +
Sbjct: 658 ANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIA 717
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
DA SL E +R N F+ PD+ Y++ I G +G + EA +
Sbjct: 718 DAKSLF-----ESLR------NKRFL------PDNFTYSSLIHGCAASGSIDEAFSLRDV 760
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + I T N LI GLCK G+L A ++F+ L Q+ G++P+ +TYN +I +CKEG
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL-QSKGISPNGITYNTLIDEYCKEG 819
Query: 306 QHQKANGLLLDMEETG 321
+ +A L M E G
Sbjct: 820 KTTEAFKLKQKMVEEG 835
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 175/414 (42%), Gaps = 110/414 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ ++N+LI G C EG + +A + + + +T+NTL +L+ ++ +
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSK 124
+ ++ K P+ ++C+ ++DGL K G + +G+ +V+T N + + L K
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------------------- 157
G+M EA LL+ M + P++ TY TL DG+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEM 571
Query: 158 -----------AWWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
W K G ++ +Y LI G+CK+ N+ +A +L EM+
Sbjct: 572 FNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMV 631
Query: 196 SEGIRADATTYNTLFM---------------------------AINNVPPD--SHVYTTY 226
+ G+ + + L +I+ + D SHV T
Sbjct: 632 NNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTI 691
Query: 227 IDG---------------LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
DG L K+G + +A +F ++ N + + T + LI G G +
Sbjct: 692 ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSI 751
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + +++ + GLTP+++TYN +I+G CK G+ +A L ++ G+ PN
Sbjct: 752 DEAFSLRDVML-SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPN 804
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 70/328 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
FT + V+F+ L++ G++ ALN+F+ M
Sbjct: 144 FTFSAVSFDLLLRAHADAGQLSS--------------------------ALNVFDGMGK- 176
Query: 79 FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
V C+P + +C +++ L + G M G+ PD T+ +M +DG++
Sbjct: 177 --VGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRV 234
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMD---GFAW-----------WSKGCRHDVYSYNIL 174
+A +E M + N Y+ +MD G W KG +V +Y +L
Sbjct: 235 AQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+ GYCKD +E+A + +EM G ++ D Y I+G + G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETG----------------DIVVDEVAYGMMINGYCQRG 338
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A +V + + + + + N +I+GLCK+GR++ + M++ G+ PD +Y
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQE-MEDVGMRPDKYSY 397
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGL 322
N +I G+C+EG +KA + M GL
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGL 425
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 85/198 (42%), Gaps = 59/198 (29%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +L + TPN++T+NSLI GLC G++ A LF KL PN IT+
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL ++E+ CK +G + F + Q M
Sbjct: 809 NTL-----------IDEY---CK----------EGKTTEAFKLKQKM------------- 831
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
++G MEEA LL+ MI+ +V+PN TY T LI+GY K
Sbjct: 832 -VEEGYMEEAIKLLDQMIENNVDPNYITYCT---------------------LIHGYIKS 869
Query: 182 RNVEDAVSLCREMLSEGI 199
N+E+ L EM G+
Sbjct: 870 GNMEEISKLYDEMHIRGL 887
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 41/220 (18%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
V +N +I GLC GRI +A LF+ L P+ T+++L
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLI------------------ 742
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+I + M+ G+ P+++T N + L K GK+ A L + + +
Sbjct: 743 -HGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801
Query: 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+PN TYNTL+D YCK+ +A L ++M+ EG +A
Sbjct: 802 SPNGITYNTLID---------------------EYCKEGKTTEAFKLKQKMVEEGYMEEA 840
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
M NNV P+ Y T I G K+G + E K++
Sbjct: 841 IKLLDQ-MIENNVDPNYITYCTLIHGYIKSGNMEEISKLY 879
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 153/349 (43%), Gaps = 56/349 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVI 59
G+ S L R+L F N+VT N+LI GLC G + EA RL KK+ F D I
Sbjct: 537 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK--I 594
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
T+NTL CK V +G G M+ QG+ PD T N++
Sbjct: 595 TYNTL--------------ISGCCKEGKVE-----EGFKLRGEMVKQGIEPDTFTYNLLI 635
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ + GK++EA L RD+ PN TY ++DG+ ++
Sbjct: 636 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 695
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-------- 217
+ YN LI YC++ N +A L +M S+GI TY++L + N+
Sbjct: 696 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCL 755
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P+ YT I G K G + + + V + ++ T +IDG K
Sbjct: 756 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSK 815
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
G +K A + H M G+ PD VTYN++ +GFCKEG+ ++ L D
Sbjct: 816 SGDMKTAAKLLHE-MVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLLAED 863
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 167/391 (42%), Gaps = 90/391 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+PN+VT+N+LI GLC G + EA R +K+ + +IT++ L + L E NE
Sbjct: 345 SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKL--EKFNEA 402
Query: 80 GVICK--------PDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDN 121
+ K P+ V +IDG CK G M+ +G+ P+ VTLN +
Sbjct: 403 NSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQG 462
Query: 122 LSKDGKMEEANCLLEVMIQ-----------------------------------RDVNPN 146
K G+ME+A C+LE M+ R++ PN
Sbjct: 463 FCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPN 522
Query: 147 TCTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
TL+ G F KG ++ + N LI+G CK N+++AV L +
Sbjct: 523 DGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLK 582
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+ML G D TYNTL M + PD+ Y I G+ + G
Sbjct: 583 KMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIG 642
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVT 293
+ EA+ +++ + V + T +IDG CK +++ +F +L QN L + V
Sbjct: 643 KLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQN--LELNSVV 700
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YN +I +C+ G +A L DM G+ P
Sbjct: 701 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 731
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNV 58
MG + G ++ PN VT NS+I+G C G++ +A + +++ F +P
Sbjct: 431 MGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGA 490
Query: 59 IT-------FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
T N+ AL EM+ +P+ T ++ GLCK+G
Sbjct: 491 FTTIIHWLCMNSRFESALRFLREMLLRN---MRPNDGLLTTLVGGLCKEGKHSDAVELWF 547
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
++++G ++VT N + L K G M+EA LL+ M++R + TYNTL+
Sbjct: 548 RLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEG 607
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GF +G D ++YN+LI+G C+ +++AV+L E S + + TY
Sbjct: 608 KVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYG 667
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ + N+ +S VY T I +NG +EA K+ + +
Sbjct: 668 VMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSK 727
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T T + LI G+C IGR++ A + M+ GL P+VV Y +I G+CK GQ K
Sbjct: 728 GIPPTTATYSSLIHGMCNIGRMEDAKCLIDE-MRKEGLLPNVVCYTALIGGYCKLGQMDK 786
Query: 310 ANGLLLDMEETGLEPN 325
+L +M + PN
Sbjct: 787 VVNVLQEMSSYDIHPN 802
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 72/348 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F++ I C G++ +A +LF + PNV+T+N
Sbjct: 310 SPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYN----------------- 352
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
N+I GLCK G M+ G+ ++T +V+ + L K K
Sbjct: 353 ------------NLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFN 400
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILI 175
EAN +L+ +++ PN YNTL+DG+ SKG + + N +I
Sbjct: 401 EANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSII 460
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
G+CK +E A + EMLS G + + T+ M + N+
Sbjct: 461 QGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMR 520
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ + TT + GL K G +A++++ + + T N LI GLCK G ++ A +
Sbjct: 521 PNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRL 580
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G D +TYN +I G CKEG+ ++ L +M + G+EP+
Sbjct: 581 LKKMLER-GFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 627
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 132/324 (40%), Gaps = 53/324 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV-ICKPDV 87
++ G + R+L + +KL V DP + +A +L E V E GV + D+
Sbjct: 190 IVSGFVSPARLLLIRLIDRKLPVLFGDPKNRHIEIASAMA-DLNE--VGESGVAVAAVDL 246
Query: 88 ---VTCTNIIDGLCKDG-----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
V CT + ++ F+ ++G+ P V T + +L K ++E++ + E M
Sbjct: 247 LIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR 306
Query: 140 QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
Q G DVY ++ IN +CK VEDA+ L +M G+
Sbjct: 307 Q----------------------GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGV 344
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ TYN L M + V Y+ I+GL K EA
Sbjct: 345 SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANS 404
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
V N LIDG CK+G L A I M + G+ P+ VT N +I GF
Sbjct: 405 VLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRI-RGDMVSKGINPNSVTLNSIIQGF 463
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK GQ ++A +L +M G N
Sbjct: 464 CKIGQMEQAECILEEMLSRGFSIN 487
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 39/146 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+ + PN+V + +LI G C G++ + + ++++ + PN IT
Sbjct: 746 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKIT 805
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRP 110
+ T +IDG K G M + +G+ P
Sbjct: 806 Y-----------------------------TVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 836
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLE 136
D VT NV+T+ K+GK+EE L E
Sbjct: 837 DTVTYNVLTNGFCKEGKIEEGKLLAE 862
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 165/369 (44%), Gaps = 56/369 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
++ G++ ++ P+ T + K C +GR+ +A +++ + N++ ++ +
Sbjct: 204 MVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCY 263
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRP---- 110
A + E + + P+VVT T ++ G CKDG M + + M+
Sbjct: 264 CGMGWTEDARRILESLQRKG---LSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDI 320
Query: 111 --DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
D V +M + + G+M++A + M ++ N YNT+++G +
Sbjct: 321 VVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQK 380
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----- 209
G R D YSYN LI+GYC++ ++ A +CR M+ G+ A TYNTL
Sbjct: 381 VLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFC 440
Query: 210 -------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M V P+ +T +DGL+K G +A+ ++ +
Sbjct: 441 SLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVI 500
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N +I+GLCKIGR+ A ++ M+ PD +TY + G+CK GQ A L+
Sbjct: 501 TFNTVINGLCKIGRMAEAEELLDR-MKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559
Query: 317 MEETGLEPN 325
ME G P+
Sbjct: 560 MEHLGFAPS 568
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 171/398 (42%), Gaps = 75/398 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L L N++TFN++I GLC GR+ EA L ++ C P+ +T+
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTY 537
Query: 62 NTL------------ALVALNLFE--------EMVNEF---GVICK-------------- 84
TL A +N E EM N F I K
Sbjct: 538 RTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSA 597
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P++VT +I G CK+G M++ GM P+V + + K+GK++E
Sbjct: 598 RGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDE 657
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAW----WSKGCRHDV-YSYNILINGYCKDRNVE 185
AN +L+ ++ D+ P +D + + G H +N++I G CK +
Sbjct: 658 ANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIA 717
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
DA SL + ++ D TY++L M + P+ Y + I
Sbjct: 718 DAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLI 777
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL K+G + A+ +F+ + + T N LID CK G+ A+ + +++ G+
Sbjct: 778 YGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE-GI 836
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P V+TY+I+I+G C +G ++A LL M E ++PN
Sbjct: 837 QPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPN 874
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 175/414 (42%), Gaps = 110/414 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ ++N+LI G C EG + +A + + + +T+NTL +L+ ++ +
Sbjct: 392 PDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRL 451
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSK 124
+ ++ K P+ ++C+ ++DGL K G + +G+ +V+T N + + L K
Sbjct: 452 WFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCK 511
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------------------- 157
G+M EA LL+ M + P++ TY TL DG+
Sbjct: 512 IGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEM 571
Query: 158 -----------AWWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
W K G ++ +Y LI G+CK+ N+ +A +L EM+
Sbjct: 572 FNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMV 631
Query: 196 SEGIRADATTYNTLFM---------------------------AINNVPPD--SHVYTTY 226
+ G+ + + L +I+ + D SHV T
Sbjct: 632 NNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTI 691
Query: 227 IDG---------------LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
DG L K+G + +A +F ++ N + + T + LI G G +
Sbjct: 692 ADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSI 751
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + +++ + GLTP+++TYN +I+G CK G+ +A L ++ G+ PN
Sbjct: 752 DEAFSLRDVML-SAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPN 804
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 70/328 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
FT + V+F+ L++ G++ ALN+F+ M
Sbjct: 144 FTFSAVSFDLLLRAHADAGQLSS--------------------------ALNVFDGMGK- 176
Query: 79 FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
V C+P + +C +++ L + G M G+ PD T+ +M +DG++
Sbjct: 177 --VGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRV 234
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMD---GFAW-----------WSKGCRHDVYSYNIL 174
+A +E M + N Y+ +MD G W KG +V +Y +L
Sbjct: 235 AQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLL 294
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+ GYCKD +E+A + +EM G ++ D Y I+G + G
Sbjct: 295 VKGYCKDGRMEEAERVVKEMKETG----------------DIVVDEVAYGMMINGYCQRG 338
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A +V + + + + + N +I+GLCK+GR++ + M++ G+ PD +Y
Sbjct: 339 RMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQE-MEDVGMRPDKYSY 397
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGL 322
N +I G+C+EG +KA + M GL
Sbjct: 398 NTLIDGYCREGSMRKAFEMCRMMVRNGL 425
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 93/198 (46%), Gaps = 40/198 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L +L + TPN++T+NSLI GLC G++ A LF KL PN IT+
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL ++E+ CK T + M+++G++P V+T +++
Sbjct: 809 NTL-----------IDEY---CKEGKTT-----EAFKLKQKMVEEGIQPTVITYSILIYG 849
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L G MEEA LL+ MI+ +V+PN TY T LI+GY K
Sbjct: 850 LCTQGYMEEAIKLLDQMIENNVDPNYITYCT---------------------LIHGYIKS 888
Query: 182 RNVEDAVSLCREMLSEGI 199
N+E+ L EM G+
Sbjct: 889 GNMEEISKLYDEMHIRGL 906
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 54/236 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGV 81
V +N +I GLC GRI +A LF+ L P+ T+++L A +E + V
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760
Query: 82 ICK----PDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGK 127
+ P+++T ++I GLCK G + +G+ P+ +T N + D K+GK
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
EA L + M++ + P V +Y+ILI G C +E+A
Sbjct: 821 TTEAFKLKQKMVEEGIQPT---------------------VITYSILIYGLCTQGYMEEA 859
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+ L +M+ NNV P+ Y T I G K+G + E K++
Sbjct: 860 IKLLDQMIE-----------------NNVDPNYITYCTLIHGYIKSGNMEEISKLY 898
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 163/356 (45%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P + T+N L+ G C +G+I EA R+ ++ P+V+T+NTL + +L
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL 375
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
EEM ++ GV C + VT I+ +CK G M + G+ PD VT N +
Sbjct: 376 IEEM-DKKGVKC--NAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGA 432
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K GKM +A +++ M + + +T T NT++ + +G D
Sbjct: 433 YCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILD 492
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
SY ILI GY KD + A++L EM I TYN++
Sbjct: 493 EVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLN 552
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M N + PD Y I G G V +A + + + + + TCN L+ GLC+ G
Sbjct: 553 EMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREG 612
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ A +F+ L+ + G DVVTYN +I CKEG+ + A LL +ME L P+
Sbjct: 613 MLEKALKLFNTLV-SKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPD 667
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 177/409 (43%), Gaps = 89/409 (21%)
Query: 5 SGGFVLLGRILMS-----CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
S +LL R ++ PN +FN LI G C E ++ +A K++ F C P+ +
Sbjct: 190 SSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTV 249
Query: 60 TFNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
++NT+ AL+ L +E +++ P+ T ++ G C+ G M
Sbjct: 250 SYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIM 309
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ P V T N++ + DGK++EA + + M + +V P+ TYNTL+DG + W
Sbjct: 310 TRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDS 369
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG + + +YNI++ CK N+ +A + +M G+ D TYNTL
Sbjct: 370 SEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429
Query: 210 F------------------MAINNVPPDSHVYTT---------YIDGLY-------KNGF 235
M + D+ T +D Y K G+
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGY 489
Query: 236 VLE-------------------AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+L+ A+ ++ + + + + T N +I GLC+ ++ A D
Sbjct: 490 ILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAID 549
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++N GL PD TYNI+IHGFC EG +KA +M E +P+
Sbjct: 550 KLNEMLEN-GLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPD 597
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 145/327 (44%), Gaps = 64/327 (19%)
Query: 19 FTPNMVTFNSLIKGLC---TEGRILEAARLFKKLNVFCCDPNVITFNTLAL--------- 66
+ PN++T N+L+ L + IL A ++ K PN +FN L
Sbjct: 171 YRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVK 230
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
AL+ +M +EFG C PD V+ I+D L K M +G+ P+ T N
Sbjct: 231 DALDWVNKM-SEFG--CVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYN 287
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + G ++EA ++E+M + ++ P V++YN+L+N
Sbjct: 288 MLVCGYCRLGLLKEATKVIEIMTRNNLLPT---------------------VWTYNMLVN 326
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G+C D +++A + EM + D TYNTL + S VY + I+ + K G
Sbjct: 327 GFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVY-SLIEEMDKKGVK 385
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A+ T N ++ +CK G + A + +N GL+PD VTYN
Sbjct: 386 CNAV----------------TYNIILKWMCKKGNMTEATTTLDKMEEN-GLSPDCVTYNT 428
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLE 323
+I +CK G+ KA ++ +M GL+
Sbjct: 429 LIGAYCKAGKMGKAFRMMDEMTSKGLK 455
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 120/287 (41%), Gaps = 50/287 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L ++ + +P+ VT+N+LI C G++ +A R+ ++ + T
Sbjct: 402 GNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTL 461
Query: 62 NTLALVALNLFEEMVNEFGVICKP-------DVVTCTNIIDGLCKD----------GFMM 104
NT+ L L + +++ + ++C D V+ +I G KD M
Sbjct: 462 NTI-LHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMK 520
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
++ + P +T N + L + K+++A L M++ + P+ TYN ++ GF
Sbjct: 521 ERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVE 580
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ DVY+ NIL+ G C++ +E A+ L ++S+G D TYNT+
Sbjct: 581 KAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTII 640
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
M + PD + Y I L G + EA
Sbjct: 641 SSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEA 687
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L +L + P+ T+N +I G C EG + +A + ++ N
Sbjct: 551 LNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM------------------IEN 592
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF KPDV TC ++ GLC++G ++ +G DVVT N +
Sbjct: 593 LF-----------KPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIIS 641
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+L K+GK E A LL M + + P+ TY ++ + + ++ ++ +G
Sbjct: 642 SLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVH 701
Query: 181 DRNVE 185
D+N++
Sbjct: 702 DQNLK 706
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 164/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L S PN+V + SLI+ GR + +++K++ C P+++
Sbjct: 496 GRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLL 555
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N+ LFEE+ + G++ PDV + + +I GL K GF
Sbjct: 556 NSYMDCVFKAGEVEKGRALFEEIKAQ-GLV--PDVRSYSILIHGLVKAGFSRETYKLFYE 612
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +QG+ DV+ N + D K GK+++A LLE M + + P TY +++DG A +
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G +V Y+ LI+G+ K +++A + E++ +G+
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL--------- 723
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+S+ + +D L K + EA F + N KC T + +I+GLC I
Sbjct: 724 --------TPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMI 775
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G K G +A GL + +G P+
Sbjct: 776 RKFNKAF-VFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPD 831
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 59/339 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P + +N++I G + G+ EA L ++ C P+VI +N + AL +
Sbjct: 341 PCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRI 400
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM + P++ T +ID LCK G M + G+ P+++T+N+M D
Sbjct: 401 HDEMRQD----AAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDR 456
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
L K K++EA + + + +P++ T+ +L+DG +G D YS
Sbjct: 457 LCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLG--RRGRVDDAYSLYEKMLDSDQI 514
Query: 171 -----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
Y LI + K ED + +EM+ G PD + +
Sbjct: 515 PNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG-----------------CSPDLMLLNS 557
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
Y+D ++K G V + +F I V + + + LI GL K G + + +F+ M+
Sbjct: 558 YMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE-MKEQ 616
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
GL DV+ YN +I GFCK G+ KA LL +M+ GL+P
Sbjct: 617 GLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQP 655
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 54/317 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L I P++ +++ LI GL G E +LF ++ +V+ +
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG 107
NT+ A L EEM + G+ +P VVT +++DGL K + +M+ +
Sbjct: 626 NTVIDGFCKSGKVDKAYQLLEEMKTK-GL--QPTVVTYGSVVDGLAKIDRLDEAYMLFEE 682
Query: 108 MRPDVVTLNV-----MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ V LNV + D K G+++EA +LE ++Q+ + PN+ T+N L+D +
Sbjct: 683 AKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEE 742
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + +Y+I+ING C R A +EM +G++ + TY T
Sbjct: 743 IDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + PDS Y I+GL ++A VF
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG 862
Query: 251 CVLTIETCNCLIDGLCK 267
C + +TC L+D L K
Sbjct: 863 CRVNSKTCVVLLDALHK 879
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 140/363 (38%), Gaps = 66/363 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P + +LI L R LF ++ + NV F TL V AL
Sbjct: 199 FRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAAL 258
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------------MMDQGMRPDVVT 114
+L +EM K + T ++ +C D F M QG+ PD VT
Sbjct: 259 SLLDEM--------KSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVT 310
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WW 160
+ L K +++EA L E + P YNT++ G+
Sbjct: 311 YTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQK 370
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
KGC V +YN ++ + VE+A+ + EM + + TTYN L
Sbjct: 371 RKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGELE 429
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + P+ ID L K + EA +F + + C T LI
Sbjct: 430 AALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLI 489
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DGL + GR+ A+ ++ ++ + + P+VV Y +I F K G+ + + + +M G
Sbjct: 490 DGLGRRGRVDDAYSLYEKMLDSDQI-PNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGC 548
Query: 323 EPN 325
P+
Sbjct: 549 SPD 551
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 69/269 (25%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K K++EA ++E+M + P Y TL+ + ++ G +V+
Sbjct: 180 KSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVH 239
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+ L+ + ++ ++ A+SL EM S AD YN M
Sbjct: 240 LFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEM 299
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK--------------------- 250
+ PD YTT I L K + EA+++F + ++
Sbjct: 300 KAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKF 359
Query: 251 --------------CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
C+ ++ NC++ L + G+++ A I + Q+ P++ TYNI
Sbjct: 360 DEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAA--PNLTTYNI 417
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I CK G+ + A + M+E GL PN
Sbjct: 418 LIDMLCKAGELEAALKVQDTMKEAGLFPN 446
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +++L ++ TPN T+N L+ L I EA F+ + C PN +T
Sbjct: 705 VGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMT 764
Query: 61 F----NTLALV-----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ N L ++ A ++EM + G+ KP+ +T T +I GL K G +M+
Sbjct: 765 YSIMINGLCMIRKFNKAFVFWQEMQKQ-GL--KPNNITYTTMIAGLAKAGNVMEARGLFD 821
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G PD N M + LS K +A + E + N+ T L+D
Sbjct: 822 RFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDAL 877
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 19/163 (11%)
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV-PPDS------------ 220
L+ + K +++A + M R + Y TL A++ PD
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233
Query: 221 -----HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
H++TT + + G + A+ + + ++ + N ID K+G++ +AW
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
FH M+ GL PD VTY +I CK + +A L +++
Sbjct: 294 KFFHE-MKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELD 335
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 52/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + I+ + + +NSL+KG C GR+ EA + + F N+ T+
Sbjct: 313 GDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAG-FAGLRNLRTY 371
Query: 62 NTL--ALVALNLFEEMVN-----EFGVICKPDVVTCTNIIDGLCKDGFMMD--------- 105
N + L + +E + E V C PD VT +I GLC++GF
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----- 159
G + DV + + M + L G++ +A + E M + PN+ YN L+ GF
Sbjct: 432 VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTS 491
Query: 160 -----WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+SK GC V +YN LI+G CK ++A S+ REM+ G D TTY +L
Sbjct: 492 DAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLI 551
Query: 211 MAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-C 251
+ + D ++ I GL G V EA+ VFS + K C
Sbjct: 552 RGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNC 611
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T N L+DGL + G + A ++ + ++ GL PD+++YN I G C + +
Sbjct: 612 PPNLVTYNTLMDGLYETGYIDKAATLWTSITED-GLEPDIISYNTRIKGLCSCDRIHEGI 670
Query: 312 GLLLDMEETGLEP 324
LL ++ G+ P
Sbjct: 671 QLLDEVLSRGIIP 683
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/394 (25%), Positives = 161/394 (40%), Gaps = 93/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALN 70
PN+ T+N +++ LC G + A LF L P+ IT++TL L AL+
Sbjct: 155 APNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALD 214
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLC------------KDGFMMDQGMRPDVVTLNVM 118
L +EM +PDVV C N + G C D + D G RP++ T NVM
Sbjct: 215 LLDEMPRSR---VQPDVV-CYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVM 270
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D L K G+ +E + E M+ ++ P+ TY L+ G G
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------- 217
D YN L+ G+C+ V++A G+R + TYN + + +
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIE 389
Query: 218 ------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
PD+ + T I GL +NGF +A +F L + + + +I+GL
Sbjct: 390 LWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGL 449
Query: 266 CKIGRLKIAWDIFHML----------------------------------MQNPGLTPDV 291
C +GRL A ++ + M + G +P V
Sbjct: 450 CNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTV 509
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +I G CK ++Q+A+ + +M E G P+
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 22/185 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDA----VSLCREMLSEGIRADATTYN----------- 207
GC + S+N L++ + + R DA SL I + TYN
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173
Query: 208 -----TLFMAIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
TLF ++ V PD Y+T + GL K + A+ + + + + N
Sbjct: 174 LDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNA 233
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ G K G + ++ L+++PG P++ TYN+M+ G CK G+ ++ + M
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVAN 293
Query: 321 GLEPN 325
L+P+
Sbjct: 294 NLQPD 298
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+N+L+ GL G I +AA L+ + +P++I++NT
Sbjct: 613 PNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT--------------RIK 658
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+C +C I +G+ ++ +G+ P V+T N++ + K G ++
Sbjct: 659 GLC-----SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 167/364 (45%), Gaps = 56/364 (15%)
Query: 14 ILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA------- 65
+++ C P +VT+N+++ C +G++ EA +L ++ C PN +T+N L
Sbjct: 180 VMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSG 239
Query: 66 --LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
A L +EM+ G+ + T +I G C+ G M+ +G P +V
Sbjct: 240 ELEQAKELIQEML-RLGL--EVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLV 296
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------------ 161
T N + L K G++ +A LL+VM+ +++ P+ +YNTL+ G+
Sbjct: 297 TYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL 356
Query: 162 --KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNV 216
+G V +YN LI+G C+ +++ A+ L EM+ G D T+ L F + N+
Sbjct: 357 RFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNL 416
Query: 217 P---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P PD Y T I G K G +A + + + T N
Sbjct: 417 PMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVF 476
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDGL K+G LK A ++ ++ N GL PD VTY +IH G +KA + L+M G
Sbjct: 477 IDGLHKLGNLKEASELVKKMLYN-GLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKG 535
Query: 322 LEPN 325
+ P+
Sbjct: 536 IFPS 539
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 158/356 (44%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P +VT+N+++ GLC GR+ +A +L + P+++++NTL A L
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 352
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F E+ G++ P VVT +IDGLC+ G M+ G PDV T ++
Sbjct: 353 FAELRFR-GLV--PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRG 409
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G + A L + M+ R + P+ Y T + G ++G D
Sbjct: 410 FCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPD 469
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +YN+ I+G K N+++A L ++ML G+ D TY ++
Sbjct: 470 LITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFL 529
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + P YT I G + A+ F + + T N LI+GLCK+
Sbjct: 530 EMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVR 589
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A+ F MQ G++P+ TY I+I+ C G Q+A L DM + ++P+
Sbjct: 590 KMDQAYKFF-TEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPD 644
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 145/349 (41%), Gaps = 73/349 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++V++N+LI G G I EA LF +L P+V+T+
Sbjct: 309 GRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTY 368
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
NTL IDGLC+ G M+ G PD
Sbjct: 369 NTL-----------------------------IDGLCRMGDLDVAMRLKDEMIKHGPDPD 399
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------F 157
V T ++ K G + A L + M+ R + P+ Y T + G
Sbjct: 400 VFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQE 459
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
++G D+ +YN+ I+G K N+++A L ++ML G+
Sbjct: 460 EMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGL-----------------V 502
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD YT+ I G + +A VF + + ++ T LI GRLK+A I
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLA--I 560
Query: 278 FHML-MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
H M G+ P+V+TYN +I+G CK + +A +M+ G+ PN
Sbjct: 561 LHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPN 609
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 38/237 (16%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G + +T V+ D L+++G M A C++E ++ + N ++D W
Sbjct: 76 GFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKME-NGVVDVLILDLLLWI------ 128
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
Y K +E + + +M+S+G+ D N + + +
Sbjct: 129 -----------YAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREV 177
Query: 216 --------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ P Y T +D K G V EA+++ + C+ T N L++GL
Sbjct: 178 YNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSH 237
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G L+ A ++ +++ GL TY+ +I G+C++GQ +A+ L +M G P
Sbjct: 238 SGELEQAKELIQEMLR-LGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVP 293
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 23/109 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
PN++T+N+LI GLC ++ +A + F ++ PN T+ L NL ++E +
Sbjct: 573 PNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALR- 631
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
L KD M+D+ ++PD T + + +L+KD K
Sbjct: 632 ------------------LYKD--MLDREIQPDSCTHSALLKHLNKDYK 660
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 52/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + I+ + + +NSL+KG C GR+ EA + + F N+ T+
Sbjct: 313 GDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAG-FAGLRNLRTY 371
Query: 62 NTL--ALVALNLFEEMVN-----EFGVICKPDVVTCTNIIDGLCKDGFMMD--------- 105
N + L + +E + E V C PD VT +I GLC++GF
Sbjct: 372 NIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEAR 431
Query: 106 -QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----- 159
G + DV + + M + L G++ +A + E M + PN+ YN L+ GF
Sbjct: 432 VSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTS 491
Query: 160 -----WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+SK GC V +YN LI+G CK ++A S+ REM+ G D TTY +L
Sbjct: 492 DAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLI 551
Query: 211 MAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK-C 251
+ + D ++ I GL G V EA+ VFS + K C
Sbjct: 552 RGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNC 611
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ T N L+DGL + G + A ++ + ++ GL PD+++YN I G C + +
Sbjct: 612 PPNLVTYNTLMDGLYETGYIDKAATLWTSITED-GLEPDIISYNTRIKGLCSCDRIHEGI 670
Query: 312 GLLLDMEETGLEP 324
LL ++ G+ P
Sbjct: 671 QLLDEVLSRGIIP 683
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 163/394 (41%), Gaps = 93/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALN 70
PN+ T+N +++ LC G + A LF L P+ IT++TL L AL+
Sbjct: 155 APNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALD 214
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLC------------KDGFMMDQGMRPDVVTLNVM 118
L +EM GV +PDVV C N + G C D + D G RP++ T NVM
Sbjct: 215 LLDEMPRS-GV--QPDVV-CYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVM 270
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
D L K G+ +E + E M+ ++ P+ TY L+ G G
Sbjct: 271 LDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGL 330
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------- 217
D YN L+ G+C+ V++A G+R + TYN + + +
Sbjct: 331 VIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIE 389
Query: 218 ------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
PD+ + T I GL +NGF +A +F L + + + +I+GL
Sbjct: 390 LWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGL 449
Query: 266 CKIGRLKIAWDIFHML----------------------------------MQNPGLTPDV 291
C +GRL A ++ + M + G +P V
Sbjct: 450 CNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTV 509
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +I G CK ++Q+A+ + +M E G P+
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPD 543
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDA----VSLCREMLSEGIRADATTYN----------- 207
GC + S+N L++ + + R DA SL I + TYN
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173
Query: 208 -----TLFMAIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
TLF ++ V PD Y+T + GL K + A+ + + + N
Sbjct: 174 LDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNA 233
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ G K G + ++ L+++PG P++ TYN+M+ G CK G+ ++ + M
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVAN 293
Query: 321 GLEPN 325
L+P+
Sbjct: 294 NLQPD 298
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+N+L+ GL G I +AA L+ + +P++I++NT
Sbjct: 613 PNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNT--------------RIK 658
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+C +C I +G+ ++ +G+ P V+T N++ + K G ++
Sbjct: 659 GLC-----SCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQ 702
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/390 (27%), Positives = 176/390 (45%), Gaps = 84/390 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN++TFN +IK +C G + +A ++F+ + + C+P+V T+ TL L + +E V+
Sbjct: 196 SPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVS 255
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ C P VT +I+GLCK G M +G P+ VT N + L
Sbjct: 256 LLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLC 315
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG---------------CRHD- 167
GK+E+A LL+ M+ PN TY T+++G + C ++
Sbjct: 316 LKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEY 375
Query: 168 VYS---------------------------------YNILINGYCKDRNVEDAVSLCREM 194
VYS Y+ +I+G C+D +DAV + EM
Sbjct: 376 VYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEM 435
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
++G +A T ++L MA +N + Y+ I GL K+G V
Sbjct: 436 TNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKV 495
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYN 295
EAM V++ + C + + +I+GL G ++ A ++ ML Q P PDVVTYN
Sbjct: 496 KEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYN 555
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+++ CK+ +A LL M + G +P+
Sbjct: 556 ILLNTLCKQSSISRAIDLLNSMLDRGCDPD 585
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 132/311 (42%), Gaps = 43/311 (13%)
Query: 57 NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------Q 106
NVI L AL + ++ GV P+V+T +I +CK G + D +
Sbjct: 169 NVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIR 228
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
PDV T + D L K +++EA LL+ M P+ T+N L++G
Sbjct: 229 KCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRA 288
Query: 159 ------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
+ KGC + +YN LI+G C +E A+SL M+S + TY T+
Sbjct: 289 AKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIING 348
Query: 210 ---------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + +VY+T I GL+K G EAM +F + L
Sbjct: 349 LVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELN 408
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ +IDGLC+ G+ A ++ M N G TP+ T + ++ GF + G +A +
Sbjct: 409 TIVYSAVIDGLCRDGKPDDAVEVLSE-MTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVW 467
Query: 315 LDMEETGLEPN 325
DM + N
Sbjct: 468 KDMAKHNFTQN 478
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 169/381 (44%), Gaps = 62/381 (16%)
Query: 2 GRASGGFVLLGRILMS------CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD 55
G S G V GR L+ C PN+V +N++I G C G I A +FK+L +
Sbjct: 214 GMCSEGKVEEGRKLIEDRWGKGC-VPNIVFYNTIIGGYCKLGDIENAKLVFKELKLKGFM 272
Query: 56 PNVITFNTLA--------LVALNLFEEMVNEFGV-ICKPDVVTCTNIIDGLCKDGFMMDQ 106
P + TF T+ VA + E V E G+ +C V NIID + GF +D
Sbjct: 273 PTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVC---VWFLNNIIDAKYRHGFKVDP 329
Query: 107 GM----------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+PD+ T N++ + L K+GK E A LL+ ++ + +Y L+
Sbjct: 330 AESIRWIVANDCKPDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQA 389
Query: 157 F--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ +GC+ D+ +Y ILI+G +++DAV++ +++ G+ D
Sbjct: 390 YCKSKEYDIASKLLLQLAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPD 449
Query: 203 ATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
A YN L M ++ PD++VY T IDG ++G EA KVF+
Sbjct: 450 AAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFT 509
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + N +I G C+ G L A + M L PD TY+ +I G+ K+
Sbjct: 510 LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNR-MNEEHLVPDKFTYSTIIDGYVKQ 568
Query: 305 GQHQKANGLLLDMEETGLEPN 325
A + DME+ +PN
Sbjct: 569 QDMATAIKIFRDMEKNKCKPN 589
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 138/326 (42%), Gaps = 68/326 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKK----------------LNVFCCDPNVITFNTL 64
P++ T+N LI LC EG+ AA L + + +C ++
Sbjct: 343 PDIATYNILINRLCKEGKKEVAAGLLDEASKKGLILTNLSYAPLIQAYCKSKE---YDIA 399
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVT 114
+ + L L E CKPD+VT +I GL G M +D+G+ PD
Sbjct: 400 SKLLLQLAERG-------CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAI 452
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------------- 160
N++ L K G+ A L M+ R + P+ Y TL+DGF
Sbjct: 453 YNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKVFTLSV 512
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
KG + DV +N +I G+C+ +++A++ M E ++ PD
Sbjct: 513 EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE-----------------HLVPDK 555
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y+T IDG K + A+K+F + +KC + T LI+G C G +A + F
Sbjct: 556 FTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEETFKE 615
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQ 306
MQ+ L P+VVTY +I F KE
Sbjct: 616 -MQSRDLVPNVVTYTTLIRSFAKESS 640
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 123/286 (43%), Gaps = 52/286 (18%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNV 117
A+ +++ +V + + PDV+ C ++ + K + D +G D + +
Sbjct: 153 AVEIYDYVVELYDSV--PDVIACNALLSLVVKSRRLEDARKVYDEMCERGGCVDNYSTCI 210
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
M + +GK+EE L+E W KGC ++ YN +I G
Sbjct: 211 MVKGMCSEGKVEEGRKLIE---------------------DRWGKGCVPNIVFYNTIIGG 249
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------FMAINNVPPDSH------- 221
YCK ++E+A + +E+ +G T+ T+ F+A + + +
Sbjct: 250 YCKLGDIENAKLVFKELKLKGFMPTLETFGTMINGFCKKGDFVASDRLLEEVKERGLRVC 309
Query: 222 --VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
ID Y++GF ++ + I + C I T N LI+ LCK G+ ++A +
Sbjct: 310 VWFLNNIIDAKYRHGFKVDPAESIRWIVANDCKPDIATYNILINRLCKEGKKEVAAGLLD 369
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL ++Y +I +CK ++ A+ LLL + E G +P+
Sbjct: 370 EASKK-GLILTNLSYAPLIQAYCKSKEYDIASKLLLQLAERGCKPD 414
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 122/312 (39%), Gaps = 62/312 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++V N++IKG C G + EA ++N P+ T++T+ A+ +F
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIF 578
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+M CKP+VVT T++I+G C G D + E
Sbjct: 579 RDMEKN---KCKPNVVTYTSLINGFCCQG-----------------------DFSLAEET 612
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ M RD+ PN TY TL+ FA S VY + +++ C V
Sbjct: 613 --FKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEV-------- 662
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
T+N L V S + DG + +G + F + +
Sbjct: 663 ------------TFNCLLQGF--VKKTSGRFLGEPDG-FNHGQSFLFFEFFHRMKSDGWS 707
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
N ++ LC G +K A + M G +PD V++ ++HGFC G ++
Sbjct: 708 DHGAAYNSVLVCLCVHGMVKTAC-MLQDRMVKKGFSPDPVSFAAILHGFCVVGNSKQWRN 766
Query: 313 L-LLDMEETGLE 323
+ +++E GLE
Sbjct: 767 MDFRNLDEKGLE 778
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 31/168 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---ALNLFEEMVN 77
PN+VT+ SLI G C +G A FK++ PNV+T+ TL + E+ V
Sbjct: 588 PNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNVVTYTTLIRSFAKESSTLEKAVY 647
Query: 78 EFGVI----CKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMTDNLS 123
+ ++ C P+ VT ++ G K DGF Q + +D S
Sbjct: 648 YWELMMTNKCVPNEVTFNCLLQGFVKKTSGRFLGEPDGFNHGQSFLFFEFFHRMKSDGWS 707
Query: 124 KDGK-------------MEEANCLLE-VMIQRDVNPNTCTYNTLMDGF 157
G M + C+L+ M+++ +P+ ++ ++ GF
Sbjct: 708 DHGAAYNSVLVCLCVHGMVKTACMLQDRMVKKGFSPDPVSFAAILHGF 755
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
P++V++N+++KGLC R L +++ C PNV+TFNTL L LFE +
Sbjct: 223 PDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQV 282
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ C PD+ ++DG+CK+G M G++P+VV N + L
Sbjct: 283 LAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCS 342
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+ E+A LL M D + T+N L+D F GC DV +
Sbjct: 343 AERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVIT 402
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +ING+CK+ +++AV L + M + G R P++ YT + GL
Sbjct: 403 YTTVINGFCKEGLIDEAVMLLKSMAACGCR-----------------PNTISYTIVLKGL 445
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
++A + S + C T N +I+ LCK G ++ A ++ ++ N G +PD
Sbjct: 446 CSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLN-GCSPD 504
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++Y+ +I G K G+ +A LL M G+ PN
Sbjct: 505 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 539
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 148/336 (44%), Gaps = 48/336 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
TP++ + +++ G+C EG + A + ++ + PNV+ +NT+ L + +E+
Sbjct: 292 TPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEE 351
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ F C D VT ++D C++G M++ G PDV+T + +
Sbjct: 352 LLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFC 411
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVY 169
K+G ++EA LL+ M PNT +Y ++ G W +GC +
Sbjct: 412 KEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPV 471
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N +IN CK VE A+ L ++ML +N PD Y+T IDG
Sbjct: 472 TFNTVINFLCKKGLVEQAIELLKQML-----------------LNGCSPDLISYSTVIDG 514
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G EA+++ + + N + + L K GR+ +F + Q+ +
Sbjct: 515 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNI-QDVTIRS 573
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V YN +I CK G +A L M +G PN
Sbjct: 574 DAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPN 609
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 53/340 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP-----NVITFNTLALVALNLFEEM 75
PN T+ +++ LC GRI +A + ++ C P +VI + F
Sbjct: 113 PNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSA 172
Query: 76 VNEF----GVICKPDVVTCTNIIDGLCKDGFMMDQGMR------------PDVVTLNVMT 119
V G C DV C +++ +C G +D+ +R PDVV+ N +
Sbjct: 173 VRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVL 232
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L + L+E M++ PN T+NTL+ GC
Sbjct: 233 KGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCT 292
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D+ Y +++G CK+ ++E A + M S G++ + YNT+
Sbjct: 293 PDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTV---------------- 336
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ GL +A ++ + + ++ C L T N L+D C+ G + ++ ++++
Sbjct: 337 -LKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEH- 394
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDV+TY +I+GFCKEG +A LL M G PN
Sbjct: 395 GCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPN 434
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 49/268 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG I EA L K + C PN I++ T+ L L
Sbjct: 387 LLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISY-TIVLKGL 445
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ ++ C P+ VT +I+ LCK G M+ G PD+
Sbjct: 446 CSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDL 505
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK +EA LL VM+ + ++PNT Y+++ + +
Sbjct: 506 ISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDN 565
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK + A+ M+S G P
Sbjct: 566 IQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCM-----------------P 608
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+ YT I GL GFV EA ++ + +
Sbjct: 609 NESTYTILIRGLASEGFVKEAQEMLTEL 636
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLC----------------REMLSEGIRADATTY--NTLFMA 212
YN +++GYC+ + A L R + + G ADA +
Sbjct: 86 YNAMVSGYCRAGQLASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRG 145
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC-KIGRL 271
+PP HV G A++V + C L + CN +++ +C + G +
Sbjct: 146 CAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSV 205
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + L + G PDVV+YN ++ G C + + L+ +M G PN
Sbjct: 206 DEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPN 259
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 46/350 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F PN+ T+N L+K LC ++ A +L +++ C P+ +++ T+ ++ + L +E
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG- 235
Query: 77 NEFGVICKPDVVTCTNIIDGLCKD-----GF-----MMDQGMRPDVVTLNVMTDNLSKDG 126
E +P V +I+GLCK+ F M+++G+ P+V++ + + + L G
Sbjct: 236 RELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSG 295
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK-----GCRHDVYSY 171
++E A L M++R +PN T ++L+ D W++ G + +V +Y
Sbjct: 296 QIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAY 355
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N L+ G+C N+ AVS+ M G + TY +L M
Sbjct: 356 NTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT 415
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P+ VYT ++ L ++ EA + + C ++ T N I GLC GRL
Sbjct: 416 SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 475
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A +F + Q P++VTYN ++ G K + ++A GL ++ G+E
Sbjct: 476 AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 148/358 (41%), Gaps = 51/358 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G V GR L F P + +N+LI GLC E A L +++ PNVI+++TL
Sbjct: 230 GLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLIN 289
Query: 67 VALN------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMR 109
V N F + C P++ T ++++ G G D G++
Sbjct: 290 VLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQ 349
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------W 159
P+VV N + G + +A + M + +PN TY +L++GFA
Sbjct: 350 PNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYI 409
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
W+K GC +V Y ++ C+ ++A SL M E T+N +
Sbjct: 410 WNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 469
Query: 214 -----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ PP+ Y +DGL K + EA + I +
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS 529
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N L+ G C G IA + +M + G +PD +T N++I +CK+G+ ++A +L
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVD-GKSPDEITMNMIILAYCKQGKAERAAQML 586
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 155/360 (43%), Gaps = 56/360 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVIT 60
G+ F L ++L PN+ T +SL+KG G +A L+ ++ F PNV+
Sbjct: 295 GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVA 354
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NTL + A+++F M E G C P++ T ++I+G K G
Sbjct: 355 YNTLVQGFCSHGNIVKAVSVFSHM-EEIG--CSPNIRTYGSLINGFAKRGSLDGAVYIWN 411
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ G P+VV M + L + K +EA L+E+M + + P+ T+N + G
Sbjct: 412 KMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 471
Query: 159 ---WWSK---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W K C ++ +YN L++G K +E+A L RE+ G+ ++TY
Sbjct: 472 RLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTY 531
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NTL N GL G L+ + G +T+ N +I C
Sbjct: 532 NTLLHGSCNA------------GL--PGIALQLVGKMMVDGKSPDEITM---NMIILAYC 574
Query: 267 KIGRLKIAWDIFHMLM-QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G+ + A + ++ PDV++Y +I G C+ + LL M G+ P+
Sbjct: 575 KQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPS 634
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 145/335 (43%), Gaps = 48/335 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPN----VITFNT---LALVAL 69
F +TF +I+ L +G++ L + KL F C + VI+ LA A+
Sbjct: 72 FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 131
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+F + EFG C P V +++D L + M G P+V T NV+
Sbjct: 132 EMFYR-IKEFG--CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLL 188
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------AWWSKGCRHDVYS 170
L K+ K++ A LL M + P+ +Y T++ ++ V
Sbjct: 189 KALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSV 248
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN LING CK+ + + A L REM+ +GI + +Y+TL I+ L
Sbjct: 249 YNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTL-----------------INVL 291
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+G + A + + C I T + L+ G G A D+++ +++ GL P+
Sbjct: 292 CNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPN 351
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV YN ++ GFC G KA + MEE G PN
Sbjct: 352 VVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN 386
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 68/258 (26%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN+ T+ SLI G G + A ++ K+ C PNV+ + + AL + F+E +
Sbjct: 384 SPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFM---------MDQGMR--PDVVTLNVMTDNL 122
++ C P V T I GLC G + M+Q R P++VT N + D L
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGL 503
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------------------- 156
+K ++EEA L + R V ++ TYNTL+ G
Sbjct: 504 AKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDE 563
Query: 157 -------FAWWSKG------------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
A+ +G R DV SY +I G C+ ED V L
Sbjct: 564 ITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILL 623
Query: 192 REMLSEGIRADATTYNTL 209
M+S GI T++ L
Sbjct: 624 ERMISAGIVPSIATWSVL 641
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 54/192 (28%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEE-- 74
P++ TFN+ IKGLC GR+ A ++F+++ C PN++T+N L L N EE
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513
Query: 75 ------------------------------------MVNEFGVICK-PDVVTCTNIIDGL 97
+V + V K PD +T II
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Query: 98 CKDG------FMMD------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
CK G M+D + RPDV++ + L + E+ LLE MI + P
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVP 633
Query: 146 NTCTYNTLMDGF 157
+ T++ L++ F
Sbjct: 634 SIATWSVLINCF 645
>gi|297849166|ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338306|gb|EFH68723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 170/348 (48%), Gaps = 54/348 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
V+L ++MS P+ +T+N +I LC +G I A L + +++ P+VIT+NT+
Sbjct: 154 AMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIR 213
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK---DGFMMD-------QG 107
A A+ +++ + C P ++T T +++ +C+ MD +G
Sbjct: 214 CMFDHGNAEQAIRFWKDQLRNG---CPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEG 270
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGC 164
PD+VT N + + + G +EE +++ ++ + NT TYNTL+ +W +
Sbjct: 271 CYPDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVE 330
Query: 165 R-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
V +YNILING CK R + A+ +ML + D TYNTL A+
Sbjct: 331 EILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAM 390
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ K G V +A+++ + + C+ + T N +IDGL + G +K
Sbjct: 391 S-----------------KEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKK 433
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A +++H ++ + G++PD +T +I+GFC+ ++A+ +L + G
Sbjct: 434 ALELYHHML-DAGISPDDITRRSLIYGFCRANLVEEASQVLKETSNRG 480
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 55/352 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEM 75
T N ++ LC+ G++ +A +L + + P+ + + L A+ + M
Sbjct: 102 TNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVILRIM 161
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKD 125
V GV PD +T II LCK G + G PDV+T N + +
Sbjct: 162 VMSGGV---PDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMFDH 218
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
G E+A + ++ P TY L++ + +GC D+ +Y
Sbjct: 219 GNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIVTY 278
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N L+N C+ N+E+ + + +LS G+ + TYNTL ++
Sbjct: 279 NSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEILNIMYQ 338
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P Y I+GL K + A+ F + KC+ I T N L+ + K G +
Sbjct: 339 TSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKEGMVDD 398
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ +L L P ++TYN +I G ++G +KA L M + G+ P+
Sbjct: 399 AIELLGLLKSTSCL-PGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPD 449
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 143/325 (44%), Gaps = 56/325 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A VL + C+ P++VT+NSL+ C G + E A + + + + N +T+
Sbjct: 255 GSARAMDVLEDMAVEGCY-PDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTY 313
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK--------DGF--MMD 105
NTL +L + ++E+ ++ + P V+T +I+GLCK D F M++
Sbjct: 314 NTLLHSLCSNEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLE 373
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
Q PD+VT N + +SK+G +++A LL ++ P TYN+++DG A KG
Sbjct: 374 QKCLPDIVTYNTLLGAMSKEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLA--RKGL- 430
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
++ A+ L ML GI D T +L
Sbjct: 431 ------------------MKKALELYHHMLDAGISPDDITRRSL---------------- 456
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I G + V EA +V N + T +I GLCK +++A ++ +++ +
Sbjct: 457 -IYGFCRANLVEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTS- 514
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKA 310
G PD Y ++ G + G +A
Sbjct: 515 GCKPDETIYTAIVKGVEEMGMGSEA 539
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 39/262 (14%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
GL DG + + D T N + NL +GK+ +A L+EVM + + P+ + + L+
Sbjct: 88 GLSSDGPITEN----DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVR 143
Query: 156 GFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G A + G D +YN++I CK ++ A+ L +M G
Sbjct: 144 GLARIDQLDKAMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPP 203
Query: 202 DATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D TYNT+ + N PP YT ++ + + AM V
Sbjct: 204 DVITYNTVIRCMFDHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVL 263
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ C I T N L++ C+ G L ++A I H+L GL + VTYN ++H C
Sbjct: 264 EDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVALVIQHILSH--GLELNTVTYNTLLHSLC 321
Query: 303 KEGQHQKANGLLLDMEETGLEP 324
+ +L M +T P
Sbjct: 322 SNEYWDEVEEILNIMYQTSYCP 343
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 16/209 (7%)
Query: 128 MEEANCLLEV-------MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
M +N LLEV + + VNP +C + +D W + + L+ C
Sbjct: 1 MASSNLLLEVHFLHLPSLSPKQVNPLSCRKFSSLD----WKQEIGLKNLRCHGLMTSVCI 56
Query: 181 DR--NVEDAVSLCREMLSEGIRADATTYNTLFMAINN--VPPDSHVYTTYIDGLYKNGFV 236
D +V+D E G+ + L ++ + D + L NG +
Sbjct: 57 DNVADVDDHAERSSEFHHYGVGNNLRARKQLGLSSDGPITENDEETNNEILHNLCSNGKL 116
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+A K+ + H V +C+ L+ GL +I +L A I +++ + G+ PD +TYN+
Sbjct: 117 TDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVILRIMVMSGGV-PDTITYNM 175
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I CK+G + A LL DM +G P+
Sbjct: 176 IIGNLCKKGHIRSALVLLEDMSLSGSPPD 204
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 56/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ VT+++LI C GR A RL ++ P + + + AL+L
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSL 287
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FEEM + C+PDV T T +I GL K G M +G +PD V +N M +
Sbjct: 288 FEEMRYMY---CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINF 344
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-----------FAWWSK----GCRH 166
L K G++++ L E M PN TYNT++ F+W+ + G
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISP 404
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---------- 216
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464
Query: 217 --------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ VY I L K G + +A+ +F + C + N L+ GL +
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A MQ G PD+ +YNI+++G K G +A +L +M+ + ++P+
Sbjct: 525 CMLDEALTTMRK-MQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 43/310 (13%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +I+ L I +A +F ++ C P +N++ ++ ++ L+ EM
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN-LSKDGKMEEANCLL 135
NE C+PD VT + +I CK G D +R LN M +N + K+ ++
Sbjct: 222 NEGH--CQPDTVTYSALISAFCKLG-RQDSAIR----LLNEMKENGMQPTAKI--YTMII 272
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ + D N +L + + CR DV++Y LI G K +++A EM
Sbjct: 273 SLFFKLD---NVHGALSLFEEMRYMY--CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
EG + PD+ V I+ L K G + + +K+F +G C+ +
Sbjct: 328 REGCK-----------------PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNV 370
Query: 256 ETCNCLIDGLCKI-GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N +I L + R+ + F M+ G++P TY+I+I GFCK + +KA LL
Sbjct: 371 VTYNTIIKALFESKSRVSEVFSWFER-MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLL 429
Query: 315 LDMEETGLEP 324
+M+E G P
Sbjct: 430 EEMDEKGFPP 439
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 68/263 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF- 79
P+ V N++I L GR+ + +LF+++ V C PNV+T+NT+ + AL + V+E
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTI-IKALFESKSRVSEVF 391
Query: 80 -------GVICKPDVVTCTNIIDGLCK----DGFMM------DQGMRP------------ 110
G P T + +IDG CK + MM ++G P
Sbjct: 392 SWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451
Query: 111 -----------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
VM +L K G++++A L + M + PN
Sbjct: 452 GKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNV 511
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
YN LM G A GC D+ SYNI++NG K A+ +
Sbjct: 512 YAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTN 571
Query: 194 MLSEGIRADATTYNTLFMAINNV 216
M + I+ DA +YNT+ A+++
Sbjct: 572 MKNSTIKPDAVSYNTVLSALSHA 594
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L + +C + + + +IK L GR+ +A LF +++ C PNV +N L L
Sbjct: 463 LFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522
Query: 68 ALNLFEEMV------NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
+ +E + E G C PD+ + I++GL K G M + ++PD
Sbjct: 523 RACMLDEALTTMRKMQEHG--CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
V+ N + LS G EEA L++ M + TY+++++
Sbjct: 581 AVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
R+V N M F W +K +HD +Y LI +C + VE + + M+ E
Sbjct: 94 REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALI--HCLEL-VEQYGEMWK-MIQEM 149
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+R+ M ++ V I L + +A+ +F I KC T +
Sbjct: 150 VRSPICVVTP--MELSQV----------IRMLGNAKMIGKAITIFYQIKARKCQPTAQAY 197
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L G+ + ++++ + PD VTY+ +I FCK G+ A LL +M+
Sbjct: 198 NSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMK 257
Query: 319 ETGLEP 324
E G++P
Sbjct: 258 ENGMQP 263
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 40/250 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------VF 52
R S F R+ S +P+ T++ LI G C RI +A L ++++ +
Sbjct: 385 SRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444
Query: 53 CCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
C + + +A LF+E+ G +I L K G + D
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCG---SSSARVYAVMIKHLGKAGRLDDAINLFDE 501
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G P+V N + L++ ++EA + M + P+ +YN +++G A
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLA--KT 559
Query: 163 GCRH----------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G H D SYN +++ E+A L +EM + G D TY
Sbjct: 560 GGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITY 619
Query: 207 NTLFMAINNV 216
+++ AI V
Sbjct: 620 SSILEAIGKV 629
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 160/338 (47%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ TFN LI LC EG++ +A L KK+ P+V+T+NT+ LN +
Sbjct: 166 PDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTV----LNWY-------- 213
Query: 81 VICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
CK +ID M +G+ D T N++ D+L K+ + + LL+ M
Sbjct: 214 --CKKGRYKAALELIDQ------MGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMR 265
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK-GCRHDVY-------------SYNILINGYCKDRNVE 185
+R ++PN TYN++++GF K G ++ +YN LI+G+C D N E
Sbjct: 266 KRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFE 325
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
A+++ M + G + + +Y+ L M +N + YT I
Sbjct: 326 QALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMI 385
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL +NG + E++K+ + V + T + LI+G C++G++K +I M GL
Sbjct: 386 DGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEII-CKMYKAGL 444
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ + Y +I+ +CK G +A + + M G + N
Sbjct: 445 APNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDAN 482
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 159/345 (46%), Gaps = 67/345 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R++ G++LL ++ +PN +T+NS+I G EG+I A R+F+++++ PN +T+N
Sbjct: 253 RSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYN 312
Query: 63 TL------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
L AL L EM+ G KP+ V+ + +++GLC+
Sbjct: 313 ALIDGHCHDGNFEQALTIL----EMMEATGP--KPNEVSYSALLNGLCRHAKFELSKSIL 366
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M GM + M D L ++G + E+ LL+ M++ V P
Sbjct: 367 ERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVP--------------- 411
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
DV ++++LING+C+ +++ + +M G+ P+S
Sbjct: 412 ------DVVTFSVLINGFCRVGKIKNVKEIICKMYKAGL-----------------APNS 448
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+YTT I K G V+EA KV+ A+ CN L+ LCK G++ +A FH
Sbjct: 449 IIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHH 508
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G P+ +T++ +I+G+ G KA + +M + G P+
Sbjct: 509 -MSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPS 552
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 153/365 (41%), Gaps = 49/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++L P++VTF+ LI G C G+I + K+ PN I + TL
Sbjct: 400 LLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYC 459
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
+ F+ V + + C ++ LCKDG M G P+ +
Sbjct: 460 KTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSI 519
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--AWWSKGCRH----- 166
T + + + G +A + + MI+ +P+ TY L+ A K +
Sbjct: 520 TFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKL 579
Query: 167 -------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------ 213
D +YN ++ K + DAV+L EM+ + D+ TY +F +
Sbjct: 580 HYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKM 639
Query: 214 -------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
V P+ +YTT++DGL++ G A+ + + + N
Sbjct: 640 VAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNV 699
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+++G ++G++ A DIF M+ ++P + TYNI++HG+ K+ K + L M T
Sbjct: 700 ILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRT 759
Query: 321 GLEPN 325
G+ P+
Sbjct: 760 GIFPD 764
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 88/408 (21%), Positives = 162/408 (39%), Gaps = 86/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + ++ + P+ T+ L+K LC G+ EA RL KL+ + +T+
Sbjct: 532 GNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTY 591
Query: 62 NTLALV---------ALNLFEEMVNE--------FGVI---------------------- 82
NT+ + A+ LF+EMV + +I
Sbjct: 592 NTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLG 651
Query: 83 ---CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
P+ V T +DGL + G M G+ D++ NV+ + S+ GKM
Sbjct: 652 KGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGKMA 711
Query: 130 EANCLLEVMIQR-DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
+A + +M ++P+ TYN L+ G+A G D + + L
Sbjct: 712 KAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSL 771
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------------------INNV 216
I G+CK ++ + L ++ML +G+ D T+N L M + ++
Sbjct: 772 ILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDI 831
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD + + I L + V E+ + + C+ L++ +C++G + A+
Sbjct: 832 FPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFK 891
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ M+ G++ V + ++ G K G+ ++A +L M L P
Sbjct: 892 LKDE-MEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIP 938
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 48/228 (21%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEM 75
TFN LI C + +A L +N+F P++ T +++ V L EM
Sbjct: 802 TFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEM 861
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+ E G C PD +++ +C+ G M G+ V + + L+K
Sbjct: 862 L-ERG--CIPDRRQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKC 918
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------------------- 166
GK+EEA +L+ M+++ + P T+ TLM F CR+
Sbjct: 919 GKVEEAKLVLDFMLRKSLIPTIATFTTLMHMF------CRNESLVEALKLKDTMDFCDVK 972
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
DV +YN+LI+G C D +V A+ L +E+ G+ + TTY L AI
Sbjct: 973 LDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCILIDAI 1020
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 51/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+++ N ++ G G++ +A +F + + P++ T+N L + N
Sbjct: 692 ADLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSN 751
Query: 78 EFGVICK----PDVVTCTNIIDGLCKDGFMMD-----------QGMRPDVVTLNVMTDNL 122
+ ++ + PD +TC ++I G CK M+D G+ D T N++
Sbjct: 752 LYNIMMRTGIFPDKLTCHSLILGFCKSA-MLDVGLKLLKKMLLDGVAVDQCTFNMLIMKY 810
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDV 168
+ ++ +A L+ +M D+ P+ T+++++ + S +GC D
Sbjct: 811 CETDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDR 870
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y L+N C+ ++ A L EM + GI + + L +
Sbjct: 871 RQYIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESAL-----------------VR 913
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL K G V EA V + + TI T L+ C+ L A + M +
Sbjct: 914 GLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNESLVEALKLKDT-MDFCDVK 972
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV+ YN++I G C +G A L ++++ GL PN
Sbjct: 973 LDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPN 1009
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 56/355 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ + GF +L +IL + P+ +TF +LIKGLC +G++ +A KL + ++
Sbjct: 118 MGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVS 177
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL A+ L ++ G + KP+V IID LCK
Sbjct: 178 YGTLINGVCKIGDTRGAIKLVRKID---GRLTKPNVEMYNTIIDALCKYQLVSEAYGLFS 234
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
M +G+ +VV+ N+M K ++EA L + M Q+++ P TY +LMDG
Sbjct: 235 EMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSG 294
Query: 157 ---FAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ W +G DV +YN LI+G CK+ +++ A++L +M + R D T+
Sbjct: 295 RISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKM--KDXRFDRLTFT 352
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L +DGL K G + +A +VF + + L + N +I+G CK
Sbjct: 353 IL-----------------LDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCK 395
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G L+ A + M++ G P VT+ I+I+ ++ ++ KA LL +M GL
Sbjct: 396 QGLLEEALTM-RSKMEDNGCIPSAVTFEIIINALFEKDENDKAEKLLHEMIARGL 449
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 59/358 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM--VN 77
TP ++ FN ++ A L +L + P+ T N L +N F M +N
Sbjct: 67 TPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNIL----MNCFCHMGQIN 122
Query: 78 -EFGVICK-------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
F V+ K P +T T +I GLC G ++ QG++ D V+ +
Sbjct: 123 FGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLI 182
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCR 165
+ + K G A L+ + R PN YNT++D + +KG
Sbjct: 183 NGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGIS 242
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+V SYNI+I G+CK + V++A++L +EM + + TY +L
Sbjct: 243 ANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWEL 302
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M +P D Y + IDGL KNG + A+ +F+ + + + T L+DGLCK
Sbjct: 303 IDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXR--FDRLTFTILLDGLCK 360
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GRLK A ++F L+ DV YN+MI+G+CK+G ++A + ME+ G P+
Sbjct: 361 GGRLKDAQEVFQDLLTKE-YDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPS 417
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 58/354 (16%)
Query: 2 GRASGGF---VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58
GRA + +LL + + +PN+VTFN LI G C E I A ++F+++ N+
Sbjct: 237 GRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANM 296
Query: 59 ITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---- 105
+T+ +L ++ L EEM E G+ P T ++++G CK G M++
Sbjct: 297 VTYTSLVSGLCREGKVEDSMKLVEEM-EELGLATLP---TLNSVLNGFCKKGMMVEAEGW 352
Query: 106 ------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
+GM+P+VVT N + D + GKM+EA M + ++P+ TYN L+ GF
Sbjct: 353 VDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTT 412
Query: 159 ---WWS----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
W S G + D+ +YN+LI C V AV L EM+ G+ T
Sbjct: 413 STDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRT 472
Query: 206 YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
YN + I+G + G A + + K + TCN +
Sbjct: 473 YNAI-----------------INGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYF 515
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
CK+G++ A + + +++ GL P+ +TY I+ G ++G G D+ +
Sbjct: 516 CKMGKMDEANVVLNEMLEK-GLVPNRITYEIINSGMIEKGYVPDIRGYAADVSK 568
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 160/376 (42%), Gaps = 91/376 (24%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAA------------------------------------ 43
+P+ TFN +I GLC G++ +A
Sbjct: 185 SPDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYH 244
Query: 44 --RLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTN 92
L K++N PNV+TFN L A+ +FEEM + G+ ++VT T+
Sbjct: 245 VDMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEM-RQHGIPA--NMVTYTS 301
Query: 93 IIDGLCKDGFM---------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
++ GLC++G + M++ + TLN + + K G M EA ++ M Q+ +
Sbjct: 302 LVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGM 361
Query: 144 NPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
PN TYNTL+DG+ A KG DV +YN LI G+ +
Sbjct: 362 KPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSG 421
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L EM G++AD TYN L I L G V +A+K+ +
Sbjct: 422 LLDEMKETGVKADLVTYNVL-----------------IGALCCKGEVRKAVKLLDEMVEV 464
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T N +I+G C+ G K A DI + M+ +VVT N+ + FCK G+ +
Sbjct: 465 GLEPKHRTYNAIINGFCEKGDAKGAHDI-RIRMEKCKKRANVVTCNVFLKYFCKMGKMDE 523
Query: 310 ANGLLLDMEETGLEPN 325
AN +L +M E GL PN
Sbjct: 524 ANVVLNEMLEKGLVPN 539
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 117/290 (40%), Gaps = 78/290 (26%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN---------------------- 146
RP ++N + L + +++ A ++R V+P+
Sbjct: 150 RPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGD 209
Query: 147 -------------TCTYNTLMDGFAWWSK-----------------GCRHDVYSYNILIN 176
TYNTL+DG+ W + G +V ++N+LIN
Sbjct: 210 VAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLIN 269
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------------MAINN 215
GYCK+ N+ A+ + EM GI A+ TY +L + +
Sbjct: 270 GYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLAT 329
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+P + ++G K G ++EA + + T N LIDG ++G++K A
Sbjct: 330 LP----TLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEA- 384
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G++PDV TYN +I GF + +GLL +M+ETG++ +
Sbjct: 385 TAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKAD 434
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ G + +P++ T+N LI G T + L ++ +++T
Sbjct: 378 LGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVT 437
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------F 102
+N L A+ L +EMV E G+ +P T II+G C+ G
Sbjct: 438 YNVLIGALCCKGEVRKAVKLLDEMV-EVGL--EPKHRTYNAIINGFCEKGDAKGAHDIRI 494
Query: 103 MMDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M++ R +VVT NV K GKM+EAN +L M+++ + PN TY + G
Sbjct: 495 RMEKCKKRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMI--E 552
Query: 162 KGCRHDVYSY 171
KG D+ Y
Sbjct: 553 KGYVPDIRGY 562
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 144/321 (44%), Gaps = 49/321 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN TFN LI+GLC G + + LF + F C P+V+T+NTL L N + +
Sbjct: 196 PNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDL 255
Query: 79 FGVI-----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
+ C PDV+T T+II G K G M+ G+ P VVT NV+ D
Sbjct: 256 LKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFG 315
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW---WSKGCRHDVY 169
K G M A + E M P+ T+ +L+DG+ W ++ ++Y
Sbjct: 316 KIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIY 375
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y+++IN CKD + +A L R+ + ++V P +Y IDG
Sbjct: 376 TYSVIINALCKDNRIHEARDLLRQ-----------------LKCSDVFPKPFIYNPVIDG 418
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G V EA + + + +C T LI G C GR+ A DIF ++ G P
Sbjct: 419 FCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLA-IGCAP 477
Query: 290 DVVTYNIMIHGFCKEGQHQKA 310
D +T + ++ K G+ +A
Sbjct: 478 DNITISSLVACLLKAGKPSEA 498
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 139/335 (41%), Gaps = 55/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
+N L+ L G++ EA LFK+ F PN TFN L LF M
Sbjct: 165 VYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAM 224
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR----PDVVTLNVMTDNLSK 124
FG C PDVVT +I GLCK + + R PDV+T + K
Sbjct: 225 -QSFG--CLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRK 281
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK+E A+ L E MI+ + P T+N L+DGF S C DV +
Sbjct: 282 LGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVT 341
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+ LI+GYC+ + IR ++ M NV P+ + Y+ I+ L
Sbjct: 342 FTSLIDGYCRTGD---------------IRLGLKVWDV--MKARNVSPNIYTYSVIINAL 384
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+ + EA + + N +IDG CK G + A ++ M+ PD
Sbjct: 385 CKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEA-NVIVTEMEEKRCRPD 443
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VT+ I+I G C +G+ +A + M G P+
Sbjct: 444 KVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPD 478
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNL 71
+P+++T+ S+I G G++ A+ LF+++ +P V+TFN L +VA
Sbjct: 266 SPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEA 325
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
E + + C PDVVT T++IDG C+ G M + + P++ T +V+ +
Sbjct: 326 MHEKMASYS--CIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINA 383
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L KD ++ EA LL + DV P YN ++DGF K CR D
Sbjct: 384 LCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPD 443
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++ ILI G+C + +A+ + ++ML+ G D T ++L
Sbjct: 444 KVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSL 485
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 38/224 (16%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G+M G D L + + ++ GK + A L+ + +Q
Sbjct: 117 GYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLI-IEVQ-------------------- 155
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+ R + YN L+N K V +A+ L +E L+ + PP++
Sbjct: 156 GEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLA-----------------FHSPPNT 198
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ I GL + G V + ++F+A+ + C+ + T N LI GLCK L A D+
Sbjct: 199 WTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKE 258
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ +PDV+TY +I GF K G+ + A+ L +M +G+EP
Sbjct: 259 VQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEP 302
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 151/336 (44%), Gaps = 53/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLFE 73
N V++N LI GLC GRI EA LF ++ CC PNV T+ L A+ L +
Sbjct: 257 NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAMGLLD 316
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
EM+ V PD++T ++I G C+ G M ++G+ PD T D L
Sbjct: 317 EMLERNLV---PDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLC 373
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K ++EEA L + + + V+ N Y+ L+DG+ SK C + Y
Sbjct: 374 KSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAY 433
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N LI+G C N+++A+SL +M+ G++ T+N L I
Sbjct: 434 TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNIL-----------------IGR 476
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ K G +A K + + T N I+ C G+++ A D+ + M+ G+ P
Sbjct: 477 MLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMM-VQMKEEGVPP 535
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D TY +I + K G A +L M + EP+
Sbjct: 536 DDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPS 571
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 118/285 (41%), Gaps = 65/285 (22%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP----------------- 145
M+++ + D+ T N+M + K G ++EA + MIQ ++P
Sbjct: 183 MLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKD 242
Query: 146 --------------NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILING 177
N +YN L+ G + C +VY+Y LI G
Sbjct: 243 VDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKG 302
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPD 219
C+ +NV A+ L EML + D TYN+L M + PD
Sbjct: 303 LCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPD 361
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y +ID L K+ V EA ++F ++ + + LIDG CK+G++ A +F
Sbjct: 362 QRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFE 421
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ +P+ T+N +IHG C G ++A L M + GL+P
Sbjct: 422 KMLSK-NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKP 465
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD---ATTY----------NTLFMAI 213
D+Y++N++IN YCK V++A +M+ G+ D +T++ ++ F
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVF 250
Query: 214 NNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+P + V Y I GL + G + EA+ +F + + C + T LI GLC+ K
Sbjct: 251 EEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHK 310
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ML +N L PD++TYN +I G C+ G A LL M+E GL P+
Sbjct: 311 AMGLLDEMLERN--LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPD 361
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 137/380 (36%), Gaps = 77/380 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++L +PN TFN+LI GLC+ G + EA LF ++ P V T
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYT 469
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
FN L ++ F++ + KP T I+ C G M
Sbjct: 470 FNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMK 529
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------- 155
++G+ PD T + K G A +L+ M D P+ T+ +L+
Sbjct: 530 EEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVV 589
Query: 156 ------------------GFAWWS----------------KGCRHDVYSYNILINGYCKD 181
G W GC D Y LI+G CK
Sbjct: 590 EKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKV 649
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N+ A+ L +M EGI +N + L K G EA
Sbjct: 650 ENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK--------------LQKYG---EAAN 692
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + +E C LI GL + G + +F L + G D + + I+I G
Sbjct: 693 IVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKL-RGCGYNDDEIAWKILIDGM 751
Query: 302 CKEGQHQKANGLLLDMEETG 321
K+G ++ + L +ME+ G
Sbjct: 752 LKQGLVEEFSQLFEEMEKNG 771
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YN L+ + V++ L EML E + D T+N + M
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD T++I G ++ V A +VF + N V + N LI GLC+ GR+
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEV----SYNQLIHGLCEAGRID 275
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F + M++ P+V TY +I G C++ H KA GLL +M E L P+
Sbjct: 276 EAVSLF-VRMKDDCCYPNVYTYTALIKGLCRKNVH-KAMGLLDEMLERNLVPD 326
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 158/364 (43%), Gaps = 55/364 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLAL------ 66
+L PN VT+N++I G C+ GR+ A + +++ PN T+ T+
Sbjct: 136 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 195
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A+ +F+EM+ + V KP+ V +I G C G M+++G+ V
Sbjct: 196 RVDEAVKVFDEMLTKGEV--KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 253
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWW 160
T N++ L DG+ EA L+E M + + P+ TYN L++G F
Sbjct: 254 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 313
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
S+ G R V +Y LI K V++ L E + GIR D YN L
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 373
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PD Y T + GL G V EA K+ + + T N L
Sbjct: 374 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 433
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G G +K A I + +M N G P ++TYN +I G CK GQ A ++ +M E G
Sbjct: 434 ISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 492
Query: 322 LEPN 325
+ P+
Sbjct: 493 ITPD 496
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 59/352 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
TFN +++ LC+ G+ A L +++ PN +T+NT+ AL++ EM
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREM 171
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDNLSK 124
G+ P+ T +I G CK G M+ +G ++P+ V N +
Sbjct: 172 RERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS---------KGCRHDVYS 170
GK++ A + M++R V TYN L MDG + KG DV++
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 289
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
YNILING+CK+ NV+ A+ + M G+RA TY L A++
Sbjct: 290 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 349
Query: 216 ---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD +Y I+ +G + A ++ + + T N L+ GLC +GR+
Sbjct: 350 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 409
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + + + G+ PD+VTYN +I G+ +G + A + +M G P
Sbjct: 410 EARKLIDEMTER-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 460
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 123/280 (43%), Gaps = 54/280 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + R++ + T+N L+ L +GR EA L +++ P+V T+
Sbjct: 231 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 290
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N L AL +FE M + GV + VVT T +I L K G + +
Sbjct: 291 NILINGHCKEGNVKKALEIFENM-SRRGV--RATVVTYTALIYALSKKGQVQETDKLFDE 347
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G+RPD+V N + ++ S G ++ A ++ M ++ + P+ TYNTLM G
Sbjct: 348 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGR 407
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + D+ +YN LI+GY +V+DA+ + EM+++G TYN
Sbjct: 408 VDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 467
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGL 230
L M N + PD Y + I+GL
Sbjct: 468 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+ + P++VT+N+LI G +G + +A R+ ++ +P ++T
Sbjct: 405 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 464
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
+N L A N+ +EMV E G+ PD T ++I+GL +
Sbjct: 465 YNALIQGLCKNGQGDDAENMVKEMV-ENGIT--PDDSTYISLIEGLTTE 510
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 161/358 (44%), Gaps = 57/358 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM--VN 77
P++ +FN LI G C G + EA + +K++ P+V++F+ L + LF ++
Sbjct: 259 APDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCL----IGLFSRRGEMD 314
Query: 78 EFGVICK--------PDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
G + PD V T +I G C+ G M + G PDVVT N +
Sbjct: 315 HAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLL 374
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ L K ++ +A LL M +R V P+ CT+ TL+ G+ + R
Sbjct: 375 NGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLR 434
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV +YN LI+G C+ ++ A L +M + I + TY+ L
Sbjct: 435 PDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGF 494
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M P+ Y + I G ++G V + + + + T N LI G K
Sbjct: 495 LDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIK 554
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+++F+ +M+ + PD VTYN++I+GF ++G Q A + M ++G+EP+
Sbjct: 555 EENMHGAFNVFN-IMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD 611
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 153/340 (45%), Gaps = 54/340 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
P+ V + +I G C G + EA R+ ++ F C P+V+T+NTL L A
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAE 387
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L EM E GV PD+ T T +I G C+ G ++ Q +RPDVVT N +
Sbjct: 388 KLLNEM-EERGVT--PDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------------GF--AWWSKGCR 165
D + + G + +AN L + M R++ PN TY+ L+D GF KG
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNL 504
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
++ +YN +I GYC+ NV+ ++M + + D T+NTL
Sbjct: 505 PNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTL---------------- 548
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I G K + A VF+ + T N +I+G + G ++ A +F M +
Sbjct: 549 -IHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKG-MGDS 606
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PD TY +I+G G ++A L +M G P+
Sbjct: 607 GIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 156/366 (42%), Gaps = 61/366 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
+L S N T N ++ C A + ++ C P+V+T N L
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVT 114
A+ L + M N KP +VT +++ GLCK MDQ + PDV +
Sbjct: 208 VDAAIALVDSMANRG---LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRS 264
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N++ + G+++EA + M R V P+ +++ L+ F+ +
Sbjct: 265 FNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMK 324
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
G D Y ++I G+C+ ++ +A+ + EM+ G D TYNTL
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLL 384
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M V PD +TT I G + G A+++F + + + T N LI
Sbjct: 385 DAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLI 444
Query: 263 DGLCKIGRLKIA---WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
DG+C+ G L A WD H + P+ +TY+I+I C++GQ + A G L +M +
Sbjct: 445 DGMCRKGDLAKANELWDDMHARE----ILPNHITYSILIDSHCEKGQVEDAFGFLDEMVK 500
Query: 320 TGLEPN 325
G PN
Sbjct: 501 KGNLPN 506
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L P++VT+NSLI G+C +G + +A L+ ++ PN IT++ L
Sbjct: 424 LFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHC 483
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----P 110
A +EMV + + P++ T +II G C+ G + Q MR P
Sbjct: 484 EKGQVEDAFGFLDEMVKKGNL---PNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFP 540
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
D++T N + K+ M A + +M + V P+ TYN +++GF+
Sbjct: 541 DLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVF 600
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
G D Y+Y LING+ N + A L EM+ G D
Sbjct: 601 KGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++ PN+ T+NS+IKG C G + + + +K+ P++ITF
Sbjct: 486 GQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITF 545
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM-------- 104
NTL A N+F M E + +PD VT II+G + G M
Sbjct: 546 NTLIHGYIKEENMHGAFNVFNIMEKE---MVRPDAVTYNMIINGFSEQGNMQDAGRVFKG 602
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
D G+ PD T + + G ++A L + MI R P+
Sbjct: 603 MGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 159/346 (45%), Gaps = 63/346 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P+ TFN LI GLC +G +L + + C PN +T+NTL A
Sbjct: 247 CF-PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 305
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
L+L + MV+ C P+ VT II+GL K G M ++G + +V+
Sbjct: 306 LSLLDRMVSS---KCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVL 362
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
L K+GK EEA L + MD KGC+ + Y+ L++G
Sbjct: 363 VSGLFKEGKSEEAMRL---------------FKESMD------KGCKLNTVLYSALVDGL 401
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHV------------- 222
C+DR ++A+ + EM +G +A T+++L F + N V
Sbjct: 402 CRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENE 461
Query: 223 --YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-H 279
Y+ I GL K+G V+EAM V++ + C + + +I GLC G ++ A ++
Sbjct: 462 VCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNE 521
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
ML P PDV+TYNI+ + CK+ +A LL M + G +P+
Sbjct: 522 MLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPD 567
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 121/289 (41%), Gaps = 55/289 (19%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------------MMDQGMRPDVVT 114
A+ LF M EF CKP V + ++++ + + GF D + P+V++
Sbjct: 126 AIELFYRMSFEF--YCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLS 183
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N++ ++ K G ++ A L M R C D Y+Y L
Sbjct: 184 FNLIIKSMCKLGLVDNAIELFREMPVRK---------------------CVPDAYTYCTL 222
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
++G CK +++AVSL EM EG T+N L M +
Sbjct: 223 MDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGC 282
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y T I GL G + +A+ + + + KCV T +I+GL K GR
Sbjct: 283 VPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGAR 342
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +LM+ G + Y++++ G KEG+ ++A L + + G + N
Sbjct: 343 VL-VLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLN 390
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 164/359 (45%), Gaps = 40/359 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F +L ++ F P+ T+ +I LC ++ ++ LF+++ +P+V T
Sbjct: 430 VGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYT 489
Query: 61 FNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCK--------DGF--MM 104
+ L + L E+ + F V C P+VVT T ++ K D F M+
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
D P+ VT + + D L K G++++A + E +I N + Y D +
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGND-----TCTI 604
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP---- 217
+V +Y LI+G CK + V DA L ML+ G + Y+ L F I +
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQE 664
Query: 218 -----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
P H YT+ ID ++K+G + AMKV S + N C + T +IDGL
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLS 724
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+G ++ A ++ LM+ G +P+VVTY +I G K G+ + L M G PN
Sbjct: 725 KVGEIEKALNLLS-LMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 147/357 (41%), Gaps = 70/357 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----------LVAL 69
PN FNSL+ G C G A +LF ++ P + +N L
Sbjct: 339 PNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELL 398
Query: 70 NLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
+L E++ E C + V N LC G MM +G PD T +
Sbjct: 399 DLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKV 458
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGC 164
L + K+E++ L + M + VNP+ TY L+D F +W+ S GC
Sbjct: 459 ITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGC 518
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y L++ Y K + + A + M+ DA Y P++ Y+
Sbjct: 519 SPNVVTYTALLHAYLKSKQLIQAHDIFHRMV------DAACY-----------PNAVTYS 561
Query: 225 TYIDGLYKNGFVLEAMKVFSAI--------------GNHKCVLT--IETCNCLIDGLCKI 268
IDGL K G + +A +V+ + GN C + + T LIDGLCK
Sbjct: 562 ALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKA 621
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A ++ ++ G P+ + Y+ +I GFCK G+ A + L M + G P+
Sbjct: 622 QKVSDAHELLDAMLA-AGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPS 677
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 152/382 (39%), Gaps = 68/382 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---------------NVFCC 54
+ R++ + PN VT+++LI GLC G I +A +++KL N C
Sbjct: 544 IFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCT 603
Query: 55 -DPNVITFNTL------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------ 101
PNV+T+ L A + E + C+P+ + +IDG CK G
Sbjct: 604 IAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQ 663
Query: 102 ----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M G P V T + D + KDG+++ A +L M+ NPN TY ++DG
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGL 723
Query: 158 A--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+ KGC +V +Y LI+G K + ++ L ++M S+G +
Sbjct: 724 SKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNY 783
Query: 204 TTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
TY L M + P Y + G K + ++ +
Sbjct: 784 VTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKK--FIASLGLLEE 841
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT--YNIMIHGFCK 303
+ +H+ V LID K GRL+ A ++ L++ T Y +I C
Sbjct: 842 MESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCL 901
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
Q ++A L +M G+ P+
Sbjct: 902 ASQVEEAFTLYTEMTRKGIVPD 923
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 151/392 (38%), Gaps = 99/392 (25%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALV- 67
LGR+ + P+ VT+N+L++ L + G++ R+ K+++ FC D + I + AL
Sbjct: 192 LGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCK 251
Query: 68 ------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PD 111
ALN+ E+ +F + D V CT +I GL + + MR P+
Sbjct: 252 VGRWADALNMLEK--EDFNL----DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPN 305
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------FAWWSK--- 162
VVT + K + ++ +M+ NPN +N+L+ G +A+ K
Sbjct: 306 VVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFN 365
Query: 163 -----GCRHDVYSYNILINGYCKDRNV--------------------------------- 184
G +YNI I C +
Sbjct: 366 RMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSR 425
Query: 185 --------EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
E A + +EM+ +G D +TY + M V P
Sbjct: 426 CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNP 485
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + YT ID K G + +A F + + C + T L+ K +L A DIF
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
H M + P+ VTY+ +I G CK G+ QKA
Sbjct: 546 HR-MVDAACYPNAVTYSALIDGLCKAGEIQKA 576
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 147/398 (36%), Gaps = 113/398 (28%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + V +I GL EA ++ C PNV+T+ TL L+ F + +
Sbjct: 267 FNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTL----LSGFLKK-KQ 321
Query: 79 FG----VI-------CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
FG +I C P+ +++ G C G M G P V N+
Sbjct: 322 FGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNI 381
Query: 118 M-------------------------------------TDNLSK----DGKMEEANCLLE 136
T N S+ GK E+A +L+
Sbjct: 382 FIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILK 441
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDR 182
M+++ P+T TY ++ K G DVY+Y ILI+ +CK
Sbjct: 442 EMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAG 501
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+E A S EM S G + TY L H Y K+ +++A +
Sbjct: 502 LIEQARSWFDEMRSVGCSPNVVTYTALL----------HAYL-------KSKQLIQAHDI 544
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG---------------L 287
F + + C T + LIDGLCK G ++ A +++ L+ G +
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTI 604
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY +I G CK + A+ LL M G EPN
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPN 642
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 103/267 (38%), Gaps = 72/267 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+ P++ T+ SLI + +GR+ A ++ ++ C+PNV+T+ + L + E+ +
Sbjct: 674 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKAL 733
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
N ++ C P+VVT T +IDGL K G M +G P+ VT V+ ++
Sbjct: 734 NLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHC 793
Query: 123 SKDGKMEEANCLL---------------------------------EVMIQRDVNPNTCT 149
G ++EA+ LL E M + P
Sbjct: 794 CAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPV 853
Query: 150 YNTLMDGFAWWSKGCRHDVY--------------------SYNILINGYCKDRNVEDAVS 189
Y L+D F SK R + Y LI C VE+A +
Sbjct: 854 YGMLIDSF---SKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFT 910
Query: 190 LCREMLSEGIRADATTYNTLFMAINNV 216
L EM +GI D + +L + V
Sbjct: 911 LYTEMTRKGIVPDLIVFVSLVKGLIEV 937
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 11/212 (5%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
LNV+ + G +EA L + P+ TYN L+ A + +
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231
Query: 175 INGYCKDRNVED--AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+G+C DR+ A +LC+ G ADA + + D+ + T I GL +
Sbjct: 232 ASGFCMDRSTIGYFAQALCKV----GRWADALN----MLEKEDFNLDTVLCTQMISGLME 283
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
EAM + + C+ + T L+ G K + I +M+M G P+
Sbjct: 284 ASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMM-TEGCNPNPS 342
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+N ++HG+C G + A L M G P
Sbjct: 343 LFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPP 374
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + + PN T+N +I LC G++ EA R+ +++ P+ + + TL
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A LF+EM PD +T T +I GLC+ G +M+ + + P
Sbjct: 370 KLGNVSSAYRLFDEMQKR---KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 426
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT + D K+GKM+EA L M+Q + PN TY L DG
Sbjct: 427 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 486
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG ++Y+YN L+NG CK N++ AV L ++M G DA TY TL
Sbjct: 487 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL------- 539
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+D K+ ++ A ++ + + + T+ T N L++G C G L+
Sbjct: 540 ----------MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 589
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ G+ P+ TYN +I +C + + M G+ P+
Sbjct: 590 LLKWMLEK-GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 637
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 60/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S + L + +P+ +T+ ++I GLC GR++EA +LF ++ +P+ +T
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A +L +M+ + G+ P++VT T + DGLCK G
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQML-QMGLT--PNIVTYTALADGLCKCGEVDTANELLH 487
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M +G+ ++ T N + + L K G +++A L++ M +P+ TY TLMD +
Sbjct: 488 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 547
Query: 162 KGCR-HD-------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ R H+ V ++N+L+NG+C +ED L + ML +GI +ATTYN
Sbjct: 548 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 607
Query: 208 TLFMAI---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+L NN+ + +Y G+ G V + GN T N LI G
Sbjct: 608 SLIKQYCIRNNMRATTEIYR----GMCAKGVVPD--------GN--------TYNILIKG 647
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
CK +K AW H M G V +YN +I GF K + +A L M GL
Sbjct: 648 HCKARNMKEAW-FLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGL 704
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 163/361 (45%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL ++ + P++++++++I G C G + +L +++ + PN T
Sbjct: 266 LGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYT 325
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N + L+ A + EM++E G+ PD V T +IDG CK G
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISE-GI--APDGVIYTTLIDGFCKLGNVSSAYRLFD 382
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + + PD +T + L + G++ EA+ L M+ + + P+ TY L+DG+
Sbjct: 383 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG 442
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K G ++ +Y L +G CK V+ A L EM +G+ + TYN
Sbjct: 443 KMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYN 502
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA---MKVFSAIGNHKCVLTIETCNCLIDG 264
+L ++GL K G + +A MK G H +T T L+D
Sbjct: 503 SL-----------------VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT---LMDA 542
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK + A ++ ++ L P VVT+N++++GFC G + LL M E G+ P
Sbjct: 543 YCKSREMVRAHELLRQMLDRE-LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601
Query: 325 N 325
N
Sbjct: 602 N 602
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 150/321 (46%), Gaps = 54/321 (16%)
Query: 55 DPNVITFNTLALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG 107
DP V LV A LF++M+N +G++ D +C I L +D +
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLN-YGLLISVD--SCNLFISHLSEDLDGIKIA 237
Query: 108 MR-----PDV------VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
++ P+V + N++T +L + G++ EA+ LL M R P+ +Y+T+++G
Sbjct: 238 LKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVING 297
Query: 157 F--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ KG + + Y+YN +I CK V +A + REM+SEGI D
Sbjct: 298 YCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 357
Query: 203 ATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
Y TL M + PD YT I GL + G V+EA K+F
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + T LIDG CK G++K A+ + + ++Q GLTP++VTY + G CK
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKC 476
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G+ AN LL +M GLE N
Sbjct: 477 GEVDTANELLHEMCRKGLELN 497
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 55/310 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++L TPN+VT+ +L GLC G + A L ++ + N+ T+
Sbjct: 442 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 501
Query: 62 NTLA---------LVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N+L A+ L ++M V F PD VT T ++D CK
Sbjct: 502 NSLVNGLCKAGNIDQAVKLMKDMEVAGF----HPDAVTYTTLMDAYCKSREMVRAHELLR 557
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ ++P VVT NV+ + G +E+ LL+ M+++ + PN TYN+L+ +
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KG D +YNILI G+CK RN+++A L R+M+ +G ++YN
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 677
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L I G YK LEA ++F + V E N D
Sbjct: 678 AL-----------------IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYD 720
Query: 268 IGRLKIAWDI 277
G++++ ++
Sbjct: 721 EGKMELTLEL 730
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 165/349 (47%), Gaps = 57/349 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL I + PN++T+ S+I G C G++ A + K + C PN T+N+L LV
Sbjct: 449 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GF----MMDQ-GMRP 110
A+ L +M + G+I P+V+T T ++ G C + F MM+Q G++P
Sbjct: 509 KDKKLHKAMALLTKMQKD-GII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D V+TD L K G+ EEA + +++ V Y TL+DGF+
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDGFSKAGNTDFAATLI 622
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+GC D Y+Y++L++ CK + + +A+ + +M GI+ T+F
Sbjct: 623 ERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC------TIF------ 670
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YT ID + + G A ++++ + + + T I+ CK GRL+ A D
Sbjct: 671 -----AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 725
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M+ G+ PDVVTYNI+I G G +A L M EPN
Sbjct: 726 LI-LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 773
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 160/376 (42%), Gaps = 62/376 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR V G + P+ VT+N++IK C EG + A R F+ L +P T
Sbjct: 167 MGRVYSQLVQDGLL------PDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFT 220
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N L L A LF M+ G C+ + + T +I GLC+
Sbjct: 221 CNALVLGYCRTGELRKACWLF-LMMPLMG--CQRNEYSYTILIQGLCEAKCVREALVLFL 277
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M G P+V + L K G++ +A L + M Q V P+ TYN ++ G++
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ GC D ++YN LI G C D+ E+A L + EG T+
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 396
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M + D V+ I+ L K + EA ++ + I +
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + T +IDG CK G++ IA ++ M M+ G P+ TYN +++G K+ + K
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKM-MERDGCQPNAWTYNSLMYGLVKDKKLHK 515
Query: 310 ANGLLLDMEETGLEPN 325
A LL M++ G+ PN
Sbjct: 516 AMALLTKMQKDGIIPN 531
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 51/369 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L + + P+++T+N++I G GR+ +A ++ + + C P+ T+
Sbjct: 302 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 361
Query: 62 NTLAL----VALNLFEEMV-NEFGVICKPDVVTCTNIIDGLC-KDGF---------MMDQ 106
NTL EE++ N P VVT TN+I+G C + F MM
Sbjct: 362 NTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
+ D+ + ++L K +++EA LL + + PN TY +++DG+ K
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIA 481
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GC+ + ++YN L+ G KD+ + A++L +M +GI + TY TL
Sbjct: 482 LEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M N + PD H Y D L K G EA +S I LT
Sbjct: 542 QCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALT 598
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
LIDG K G A + ++ + G TPD TY++++H CK+ + +A +L
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPIL 657
Query: 315 LDMEETGLE 323
M G++
Sbjct: 658 DQMSLRGIK 666
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 69/290 (23%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------V 67
S P+ T+ I C EGR+ +A L K+ P+V+T+N L
Sbjct: 698 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 757
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------------------- 102
A + + MV G C+P+ T ++ L K
Sbjct: 758 AFSTLKRMV---GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLE 814
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFA 158
M+ G+ P V T + + K G++EEA LL+ M + ++PN Y L+
Sbjct: 815 RMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874
Query: 159 WWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
++ K G + + SY +L+ G C + + E SL ++L G D +
Sbjct: 875 FFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
L DGL K G+V ++ S + C ++ +T
Sbjct: 935 ILN-----------------DGLLKAGYVDICFQMLSIMEKRYCCISSQT 967
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 75/208 (36%), Gaps = 54/208 (25%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT---------------------- 208
YN + + E + +++ +G+ D TYNT
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210
Query: 209 -------------------------------LFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
L M + + + YT I GL + V
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVR 270
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA+ +F + C + LI GLCK GR+ A +F + QN G+ P V+TYN M
Sbjct: 271 EALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQN-GVVPSVMTYNAM 329
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+ K G+ A + ME+ G P+
Sbjct: 330 IVGYSKLGRMNDALKIKELMEKNGCHPD 357
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A++ G+ + L+ + N + L + + ++ L+Q+ GL PD VTYN M
Sbjct: 131 DAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQD-GLLPDTVTYNTM 189
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I +CKEG A+ + E GLEP
Sbjct: 190 IKSYCKEGDLTTAHRCFRLLLEGGLEPE 217
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 48/333 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF---EE 74
TP++VT+N ++ G+C EGR+ +A K L + C+PN +++N + L + EE
Sbjct: 24 TPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEE 83
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLS 123
++ E G C P+VVT +I LC+ G +++Q G P+ ++ N +
Sbjct: 84 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 143
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K KM++A L++M+ R P+ +YNTL+ KGC +
Sbjct: 144 KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLI 203
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYN +I+G K ++A+ L EM+S+G++ D TY+T+ G
Sbjct: 204 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA-----------------G 246
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L + + +A++ F + + N +I GLCK A D+F ++ N G P
Sbjct: 247 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGN-GCMP 305
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ TY I+I G EG ++A LL ++ G+
Sbjct: 306 NESTYTILIEGLAYEGLIKEARDLLDELCSRGV 338
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
M D+G PD+VT NV+ + + ++G++++A L+ + PNT +YN ++ G
Sbjct: 18 MRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAER 77
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W KGC +V ++N+LI+ C+ VE A+ + ++ G ++ +YN
Sbjct: 78 WEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNP 137
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M PD Y T + L ++G V A+++ + +
Sbjct: 138 LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKG 197
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + + N +IDGL K G+ K A ++ + M + GL PD++TY+ + G C+E + + A
Sbjct: 198 CAPVLISYNTVIDGLTKAGKTKEALELLNE-MVSKGLQPDIITYSTIAAGLCREDRIEDA 256
Query: 311 NGLLLDMEETGLEPN 325
+++ G+ PN
Sbjct: 257 IRAFGKVQDMGIRPN 271
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 53/270 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L+G + PN+VTFN LI LC +G + A + +++ + C PN +++N L
Sbjct: 84 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 143
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ + MV+ C PD+V+ ++ LC+ G + D+G P
Sbjct: 144 KQKKMDKAMAFLDLMVSRG---CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 200
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+++ N + D L+K GK +EA LL M+ + + P+ TY+T+ G +
Sbjct: 201 VLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAF 260
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G R + YN +I G CK R A+ L M+ G
Sbjct: 261 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM---------------- 304
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
P+ YT I+GL G + EA + +
Sbjct: 305 -PNESTYTILIEGLAYEGLIKEARDLLDEL 333
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------NNVP-----PDS 220
CK + A+ L EM +G D TYN + I N+P P++
Sbjct: 3 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y + GL +A ++ +G C + T N LI LC+ G ++ A ++
Sbjct: 63 VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G TP+ ++YN ++H FCK+ + KA L M G P+
Sbjct: 123 IPKY-GCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPD 166
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T++++ GLC E RI +A R F K+ PN + +
Sbjct: 216 GKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLY 275
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
N + L A++LF M+ G C P+ T T +I+GL +G + +
Sbjct: 276 NAIILGLCKRRETHSAIDLFAYMI---GNGCMPNESTYTILIEGLAYEGLIKE 325
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 165/349 (47%), Gaps = 57/349 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL I + PN++T+ S+I G C G++ A + K + C PN T+N+L LV
Sbjct: 449 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 508
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GF----MMDQ-GMRP 110
A+ L +M + G+I P+V+T T ++ G C + F MM+Q G++P
Sbjct: 509 KDKKLHKAMALLTKMQKD-GII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 565
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D V+TD L K G+ EEA + +++ V Y TL+DGF+
Sbjct: 566 DEHAYAVLTDALCKAGRAEEAYSFI---VRKGVALTKVYYTTLIDGFSKAGNTDFAATLI 622
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+GC D Y+Y++L++ CK + + +A+ + +M GI+ T+F
Sbjct: 623 ERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC------TIF------ 670
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YT ID + + G A ++++ + + + T I+ CK GRL+ A D
Sbjct: 671 -----AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 725
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M+ G+ PDVVTYNI+I G G +A L M EPN
Sbjct: 726 LI-LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 773
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 159/376 (42%), Gaps = 62/376 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR V G + P+ VT+N++IK C EG + A R F+ L +P T
Sbjct: 167 MGRVYSQLVQDGLL------PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFT 220
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N L L A LF M+ G C+ + + T +I GLC
Sbjct: 221 CNALVLGYCRTGELRKACWLF-LMMPLMG--CQRNEYSYTILIQGLCDAKCVRKALVLFL 277
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M G P+V + L K G++ +A L + M Q V P+ TYN ++ G++
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ GC D ++YN LI G C D+ E+A L + EG T+
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 396
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M + D V+ I+ L K + EA ++ + I +
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + T +IDG CK G++ IA ++ M M+ G P+ TYN +++G K+ + K
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKM-MERDGCQPNAWTYNSLMYGLVKDKKLHK 515
Query: 310 ANGLLLDMEETGLEPN 325
A LL M++ G+ PN
Sbjct: 516 AMALLTKMQKDGIIPN 531
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 51/369 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L + + P+++T+N++I G GR+ +A ++ + + C P+ T+
Sbjct: 302 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 361
Query: 62 NTLAL----VALNLFEEMV-NEFGVICKPDVVTCTNIIDGLC-KDGF---------MMDQ 106
NTL EE++ N P VVT TN+I+G C + F MM
Sbjct: 362 NTLIYGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
+ D+ + ++L K +++EA LL + + PN TY +++DG+ K
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIA 481
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GC+ + ++YN L+ G KD+ + A++L +M +GI + TY TL
Sbjct: 482 LEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M N + PD H Y D L K G EA +S I LT
Sbjct: 542 QCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALT 598
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
LIDG K G A + ++ + G TPD TY++++H CK+ + +A +L
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEALPIL 657
Query: 315 LDMEETGLE 323
M G++
Sbjct: 658 DQMSLRGIK 666
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 69/290 (23%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------V 67
S P+ T+ I C EGR+ +A L K+ P+V+T+N L
Sbjct: 698 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 757
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------------------- 102
A + + MV G C+P+ T ++ L K
Sbjct: 758 AFSTLKRMV---GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLE 814
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFA 158
M+ G+ P V T + + K G++EEA LL+ M + ++PN Y L+
Sbjct: 815 RMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTK 874
Query: 159 WWSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
++ K G + + SY +L+ G C + + E SL ++L G D +
Sbjct: 875 FFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
L DGL K G+V ++ S + C ++ +T
Sbjct: 935 ILN-----------------DGLLKAGYVDICFQMLSIMEKRYCCISSQT 967
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A++ G+ + L+ + N + L + + ++ L+Q+ GL PD VTYN M
Sbjct: 131 DAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQD-GLLPDTVTYNTM 189
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I +CKEG A+ + E GLEP
Sbjct: 190 IKSYCKEGDLTTAHRYFRLLLEGGLEPE 217
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 54/208 (25%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT---------------------- 208
YN + + E + +++ +G+ D TYNT
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210
Query: 209 -------------------------------LFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
L M + + + YT I GL V
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 270
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A+ +F + C + LI GLCK GR+ A +F + QN G+ P V+TYN M
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQN-GVVPSVMTYNAM 329
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+ K G+ A + ME+ G P+
Sbjct: 330 IVGYSKLGRMNDALKIKELMEKNGCHPD 357
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F + I C G++ EA +LF K+ PNV+TFNT+ ++
Sbjct: 270 SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTV-----------IDGL 318
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ C + M+++GM P ++T +++ L++ ++ +A +L+ M
Sbjct: 319 GM--------CGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT 370
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
++ PN YN L+D F SKG +YN LI GYCK+ +
Sbjct: 371 KKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQAD 430
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A L +EMLS G + ++ ++ M + N+ P + TT I
Sbjct: 431 NAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLI 490
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL K+G +A++++ N V+ T N L+ GLC+ G+L A+ I ++ G
Sbjct: 491 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGC 549
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I G C + + +A L +M + GL+P+
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPD 587
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 86/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + PN+VTFN++I GL GR EA +K+ +P +IT+
Sbjct: 287 GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 346
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMM 104
+ L + L + + + + V+ + P+V+ N+ID + G M+
Sbjct: 347 SIL-VKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ------------------------ 140
+G+ T N + K+G+ + A LL+ M+
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465
Query: 141 -----------RDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILI 175
R+++P TL+ G F + +KG D + N L+
Sbjct: 466 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G C+ +++A + +E+L G D +YNTL M +
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 585
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD++ Y+ I GL+ V EA++ + + + + T + +IDG CK R + +
Sbjct: 586 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 645
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +M + + P+ V YN +I +C+ G+ A L DM+ G+ PN
Sbjct: 646 FDEMM-SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A LL +L F N +F S+I LC+ A R ++ + P
Sbjct: 427 GQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLL 486
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP-- 110
TL AL L+ + +N+ V+ D T ++ GLC+ G +D+ R
Sbjct: 487 TTLISGLCKHGKHSKALELWFQFLNKGFVV---DTRTSNALLHGLCEAG-KLDEAFRIQK 542
Query: 111 ---------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
D V+ N + K++EA L+ M++R + P+ TY+ L+
Sbjct: 543 EILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMN 602
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ +W G DVY+Y+++I+G CK E+ EM+S+ ++ + YN
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 662
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L A + P+S YT+ I G+ V EA +F +
Sbjct: 663 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 722
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG K+G++ + + M + + P+ +TY +MI G+ ++G +
Sbjct: 723 GLEPNVFHYTALIDGYGKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTE 781
Query: 310 ANGLLLDMEETGLEPN 325
A+ LL +M E G+ P+
Sbjct: 782 ASRLLNEMREKGIVPD 797
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 56/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVI 82
T+N+LIKG C G+ A RL K++ + N +F ++ L + +F+ + G +
Sbjct: 415 TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEM 474
Query: 83 C----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
P T +I GLCK G +++G D T N + L + GK+
Sbjct: 475 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 534
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
+EA IQ+++ +GC D SYN LI+G C + +++A
Sbjct: 535 DEA-----FRIQKEI----------------LGRGCVMDRVSYNTLISGCCGKKKLDEAF 573
Query: 189 SLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGL 230
EM+ G++ D TY+ L + N + PD + Y+ IDG
Sbjct: 574 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 633
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K E + F + + N LI C+ GRL +A ++ M++ G++P+
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPN 692
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I G + ++A L +M GLEPN
Sbjct: 693 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 70/345 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + L F + T N+L+ GLC G++ EA R+ K++ C + +++
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 556
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
NTL A +EMV G+ KPD T + +I GL F M++
Sbjct: 557 NTLISGCCGKKKLDEAFMFLDEMVKR-GL--KPDNYTYSILICGL----FNMNKVEEAIQ 609
Query: 107 --------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
GM PDV T +VM D K + EE + M+ ++V PNT YN L
Sbjct: 610 FWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL----- 664
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
I YC+ + A+ L +M +GI ++ TY +L
Sbjct: 665 ----------------IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 708
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + + P+ YT IDG K G +++ + + + T
Sbjct: 709 VEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 768
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+I G + G + A + + M+ G+ PD +TY I+G+ K+G
Sbjct: 769 MIGGYARDGNVTEASRLLNE-MREKGIVPDSITYKEFIYGYLKQG 812
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 60/240 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ T++ +I G C R E F ++ PN + +N L +AL L
Sbjct: 621 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 680
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMTDN 121
E+M ++ G+ P+ T T++I G+ K F M +G+ P+V + D
Sbjct: 681 REDMKHK-GI--SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K G+M + CLL M ++V+PN T Y ++I GY +D
Sbjct: 738 YGKLGQMVKVECLLREMHSKNVHPNKIT---------------------YTVMIGGYARD 776
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
NV +A L EM +GI PDS Y +I G K G VLEA K
Sbjct: 777 GNVTEASRLLNEMREKGI-----------------VPDSITYKEFIYGYLKQGGVLEAFK 819
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ VF + N + TCN L+ L + + + F ++ + G++PDV + I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAI 280
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK G+ ++A L MEE G+ PN
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPN 307
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 158/346 (45%), Gaps = 49/346 (14%)
Query: 2 GRASGGFVLLGRILM-SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
GRA L + ++P++ +FN +IKG+C G + +A L +++ F C P+ IT
Sbjct: 60 GRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTIT 119
Query: 61 FNTLA-----LVALNLFEEMVNEFGV--ICKPDVVTCTNIIDGLCKDGFMMD-------- 105
N L + +N E++ +C P+VVT T++I G CK G M D
Sbjct: 120 QNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDM 179
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
G RP+ VT NV+ + K ME A + +I P+ T+N+L+DG+
Sbjct: 180 LQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQL 239
Query: 159 ------WWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W G H +VY+++I+I+ C +A+SL RE+ +RAD
Sbjct: 240 DDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL---NMRAD------- 289
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P + +Y ID L K G V EA + + + C T LI G C G
Sbjct: 290 ------IVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKG 343
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
R+ A +FH +++ G PD +T N I K G + + ++L
Sbjct: 344 RIPEAVTLFHKMVET-GCRPDNITINSFISCVLKAGMPNEVHQIML 388
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 151/345 (43%), Gaps = 57/345 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAA-RLFKKLNVFCCDPNVITFNTL--ALVALNLFE 73
S + P+ F S + G CT +L+AA L K + F C +N L L+A +
Sbjct: 5 SGYVPD-AGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQ 63
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+ V F + ++ D PDV + NV+ + + G +++A
Sbjct: 64 DAVALF--------------------ESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALE 103
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF---AWWSKG------------CRHDVYSYNILINGY 178
L+E M + +P+T T N L+DG +KG C +V +Y +I+GY
Sbjct: 104 LVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGY 163
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
CK ++DA S+ +ML G R + TYN L + +++ PPD
Sbjct: 164 CKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDV 223
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ + IDG + G + +AM+++ +G H + T + +I LC R A +
Sbjct: 224 VTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRE 283
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L + P YN +I CK G+ +AN ++ DMEE G P+
Sbjct: 284 LNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPD 328
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 40/263 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLFEEMVN 77
PN+VT+ S+I G C GR+ +A ++ + PN +T+N L AL++ +
Sbjct: 151 PNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRM 210
Query: 78 EFGVI---CKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLS 123
+ +I C PDVVT ++IDG C+ G +D MR P+V T +++ +L
Sbjct: 211 YWQLILHSCPPDVVTFNSLIDGYCRCG-QLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLC 269
Query: 124 KDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDV 168
+ EA LL E+ ++ D+ P T YN ++D KGC D
Sbjct: 270 TQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDK 329
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
Y+Y ILI G+C + +AV+L +M+ G R D T N+ + + V+
Sbjct: 330 YTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIM-- 387
Query: 229 GLYKNGFVLEAMKVFSAIGNHKC 251
L +G + KV S H+C
Sbjct: 388 -LIASGHASASQKVHS----HQC 405
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 153/335 (45%), Gaps = 58/335 (17%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
TFN +++ LC G+ + A L +++ PN +T+NT+ AL + EM
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMP----RPNAVTYNTVIAGFCARGRVQAALEVMREM 173
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTDNLSK 124
G+ PD T +I G CK G M D + P V N +
Sbjct: 174 RERGGI--APDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCD 231
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHDVYS 170
GK++ A E M+QR + TYN LM D +A + G DV++
Sbjct: 232 VGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFT 291
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YNILINGYCK+ N + A+ + EM +G+RA A TY +L +V++
Sbjct: 292 YNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLI----------YVFS------ 335
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G V E ++F+ + N LI+ C G ++ A++I M+ + PD
Sbjct: 336 -RKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAE-MEKKRIPPD 393
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN ++ GFC G+ +A L+ +M + G++P+
Sbjct: 394 DMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPD 428
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 30/239 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
RAS + +L + + F+P++ T+N LI G C EG +A +F++++ +T+
Sbjct: 268 ARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTY 327
Query: 62 NTLALV--ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
+L V +E F V K PDVV +I+ C G M
Sbjct: 328 TSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEK 387
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW------ 159
+ + PD +T N + G+++EA L++ M +R + P+ +YNTL+ G++
Sbjct: 388 KRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKD 447
Query: 160 --------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG + +YN LI G CK R +DA +L +EM+++GI D +TY +L
Sbjct: 448 ALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLI 506
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+ + P++V++N+LI G +G I +A R+ ++ +P ++T
Sbjct: 407 LGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMT 466
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
+N L A NL +EMV + G+ PD T ++I+GL +
Sbjct: 467 YNALIQGLCKIRQGDDAENLMKEMVAK-GIT--PDDSTYISLIEGLTTE 512
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 163/379 (43%), Gaps = 94/379 (24%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL---------ALV 67
C P+ VT+N+L+ G C R+ EA LF+ + C PN++T++ L
Sbjct: 144 CVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGE 203
Query: 68 ALNLFEEMVNE------------FGVIC--------------------KPDVVTCTNIID 95
L L EEM E C P+VVT + ++
Sbjct: 204 GLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQ 263
Query: 96 GLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
GL + G M +G+RPDVV V+ D L K+G+ +A +L++M+Q+ P
Sbjct: 264 GLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEP 323
Query: 146 NTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
T T YN+++NG CK+ ++DA + M+ +G + DA T
Sbjct: 324 GTLT---------------------YNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVT 362
Query: 206 YNTLFMAI--------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
YNTL + +V PD I GL K G V +A ++ S+
Sbjct: 363 YNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSS 422
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ I T N LI+G +L A ++ +++ G +P+ +TY++MI+G CK
Sbjct: 423 MVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVES-GFSPNSMTYSVMINGLCKMQ 481
Query: 306 QHQKANGLLLDMEETGLEP 324
A GL M+++G+ P
Sbjct: 482 MLSVARGLFCKMKDSGIRP 500
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 167/377 (44%), Gaps = 57/377 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL + ++ ++SLI C EG I LF ++ PNV+T+
Sbjct: 199 GEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTY 258
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A + ++M GV +PDVV T + DGLCK+G
Sbjct: 259 SCLMQGLGRTGRWREASEMLKDMTAR-GV--RPDVVAYTVLADGLCKNGRAGDAIKVLDL 315
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G P +T NV+ + L K+ +M++A ++E+M+++ P+ TYNTL+ G K
Sbjct: 316 MVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGK 375
Query: 163 ----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ DV++ N LI G CK+ V DA + M+ G++ + TY
Sbjct: 376 IHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTY 435
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N L + + P+S Y+ I+GL K + A +F + +
Sbjct: 436 NFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKD 495
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
T+ N L+ LC+ L+ A +F M+N DVV++NI+I G K G +
Sbjct: 496 SGIRPTVIDYNALMTSLCREDSLEQARSLFQE-MRNVNHNVDVVSFNIIIDGTLKAGDVK 554
Query: 309 KANGLLLDMEETGLEPN 325
A LL +M L P+
Sbjct: 555 SAKELLSEMFMMDLVPD 571
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFN 62
S F +L + F N+ N ++KG C G+ +A LF ++ N C P+ +T+N
Sbjct: 94 SFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYN 153
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
TL A LFE M + G C+P++VT + +ID CK G M
Sbjct: 154 TLVNGFCKAKRLAEARVLFEAM--KKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEM 211
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---W 160
+G++ DV + + +G +E L + M++R V+PN TY+ LM G W
Sbjct: 212 EREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW 271
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++G R DV +Y +L +G CK+ DA+ + M+ +G TYN +
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVV 331
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL K + +A V + T N L+ GLC G
Sbjct: 332 -----------------VNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAG 374
Query: 270 RLKIAWDIFHMLMQNP-GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A D++ +L+ + PDV T N +I G CKEG+ A + M E GL+ N
Sbjct: 375 KIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN 431
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 54/332 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GRA +L ++ P +T+N ++ GLC E R+ +A + + + P+ +T+
Sbjct: 304 GRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTY 363
Query: 62 NTLAL---------VALNLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDG---------- 101
NTL A++L++ +++E F V KPDV TC N+I GLCK+G
Sbjct: 364 NTLLKGLCGAGKIHEAMDLWKLLLSEKFHV--KPDVFTCNNLIQGLCKEGRVHDAARIHS 421
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M++ G++ ++VT N + + K+ EA L + ++ +PN+ TY+ +++G
Sbjct: 422 SMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQ 481
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G R V YN L+ C++ ++E A SL +EM + D ++N
Sbjct: 482 MLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFN 541
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ M + ++ PD+ ++ I+ K G + EAM ++ + +
Sbjct: 542 IIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSC 601
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V + + L+ G G + + H +
Sbjct: 602 GHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY----- 226
+ LI+ K R + VS+ +M+S + T+ + L + N S ++
Sbjct: 46 STLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK 105
Query: 227 -------------IDGLYKNGFVLEAMKVFSAIG-NHKCVLT-IETCNCLIDGLCKIGRL 271
+ G ++G +AM +FS + N+ CV+ T N L++G CK RL
Sbjct: 106 RGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRL 165
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F + + P++VTY+++I +CK G+ + GLL +ME GL+ +
Sbjct: 166 AEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD 219
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 158/364 (43%), Gaps = 55/364 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLAL------ 66
+L PN VT+N++I G C+ GR+ A + +++ PN T+ T+
Sbjct: 63 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 122
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A+ +F+EM+ + V KP+ V +I G C G M+++G+ V
Sbjct: 123 RVDEAVKVFDEMLTKGEV--KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 180
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWW 160
T N++ L DG+ EA L+E M + + P+ TYN L++G F
Sbjct: 181 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 240
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
S+ G R V +Y LI K V++ L E + GIR D YN L
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 300
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PD Y T + GL G V EA K+ + + T N L
Sbjct: 301 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTL 360
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G G +K A I + +M N G P ++TYN +I G CK GQ A ++ +M E G
Sbjct: 361 ISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 419
Query: 322 LEPN 325
+ P+
Sbjct: 420 ITPD 423
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 157/352 (44%), Gaps = 59/352 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
TFN +++ LC+ G+ A L +++ PN +T+NT+ AL++ EM
Sbjct: 43 TFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREM 98
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDNLSK 124
G+ P+ T +I G CK G M+ +G ++P+ V N +
Sbjct: 99 RERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS---------KGCRHDVYS 170
GK++ A + M++R V TYN L MDG + KG DV++
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
YNILING+CK+ NV+ A+ + M G+RA TY +L A++
Sbjct: 217 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 276
Query: 216 ---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD +Y I+ +G + A ++ + + T N L+ GLC +GR+
Sbjct: 277 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 336
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + M G+ PD+VTYN +I G+ +G + A + +M G P
Sbjct: 337 EARKLIDE-MTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 387
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 54/280 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + R++ + T+N L+ L +GR EA L +++ P+V T+
Sbjct: 158 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 217
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N L AL +FE M + GV + VVT T++I L K G + +
Sbjct: 218 NILINGHCKEGNVKKALEIFENM-SRRGV--RATVVTYTSLIYALSKKGQVQETDKLFDE 274
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G+RPD+V N + ++ S G ++ A ++ M ++ + P+ TYNTLM G
Sbjct: 275 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGR 334
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + D+ +YN LI+GY +V+DA+ + EM+++G TYN
Sbjct: 335 VDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 394
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGL 230
L M N + PD Y + I+GL
Sbjct: 395 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+ + P++VT+N+LI G +G + +A R+ ++ +P ++T
Sbjct: 332 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 391
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
+N L A N+ +EMV E G+ PD T ++I+GL +
Sbjct: 392 YNALIQGLCKNGQGDDAENMVKEMV-ENGIT--PDDSTYISLIEGLTTE 437
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 61/343 (17%)
Query: 1 MGRASGGFVLLGRILMS--CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58
+GR F L +++ + C PN T+N+L+ GLC + R+ A + + P+V
Sbjct: 59 LGRVDAAFDLFRKMVAAGGC-RPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDV 117
Query: 59 ITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF----- 102
+T+NTL AL L +E + F + + P +V+ II GLC+ D
Sbjct: 118 VTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNE 177
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D+ P++VT +V+ D L K +++EA LL+ M+ S+
Sbjct: 178 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV---------------------SE 216
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GCR D+ +Y L+ G+ ++ A+ L R M+S+G PD
Sbjct: 217 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG-----------------CIPDVVT 259
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT ID L K G V +A ++F + +KC + T + LI G C+ R+ D +M
Sbjct: 260 YTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRV----DEGGKVM 315
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTYN MI G ++++A G+ +M E G P+
Sbjct: 316 REMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPD 358
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 57/338 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLF-KKLNVFCCDPNVITFNTL---------ALVALNL 71
N T + +++GLC GR+ +A F L + P+V+++ TL A +L
Sbjct: 9 NDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDL 68
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
F +MV G C+P+ T ++DGLCK + + PDVVT N +
Sbjct: 69 FRKMVAAGG--CRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAA 126
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + G+++EA M + P ++N ++ G + +
Sbjct: 127 LFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPN 186
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +Y+++I+G CK +++A L M+SEG R PD YT +
Sbjct: 187 LVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCR-----------------PDLVAYTPLV 229
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G G + A+ + + + C+ + T +ID LCK+GR+ A +IF L+ N
Sbjct: 230 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK-C 288
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P+VVTY+ +I G+C+ + + + M E PN
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPN 323
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ + P +V+FN++I GLC R+ +A +F ++ PN++T
Sbjct: 130 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 189
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++ + A L + MV+E C+PD+V T ++ G G
Sbjct: 190 YSVVIDGLCKSDQLDEAQQLLDRMVSEG---CRPDLVAYTPLVLGFSAAGRLDSALGLLR 246
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ QG PDVVT V+ D L K G++++A+ + ++ +PN TY+ L+ G+ S
Sbjct: 247 RMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRAS 306
Query: 162 K-----------GCRHDVYSYNILINGYCK-DRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ CR +V +YN +I G DRN E+A + REM G DA TY L
Sbjct: 307 RVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRN-EEAYGMFREMSECGFVPDARTYRGL 365
Query: 210 FMAINNVPPDSHVYT 224
A+ + HV T
Sbjct: 366 KRALRMIDHPPHVLT 380
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 42/255 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F P++VT+N+L+ L GR+ EA F ++ P +++FN + AL
Sbjct: 113 FAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 172
Query: 70 NLFEEMVN-EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+F EM++ +F P++VT + +IDGLCK M+ +G RPD+V +
Sbjct: 173 EVFNEMIDRDF----HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 228
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
S G+++ A LL M+ + P+ TY ++D + C
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 288
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y+ LI GYC+ V++ + REM R + TYNT+ ++ V + Y
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYG 345
Query: 225 TYIDGLYKNGFVLEA 239
+ + + + GFV +A
Sbjct: 346 MFRE-MSECGFVPDA 359
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 153/345 (44%), Gaps = 62/345 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVI 59
MGR F G IL + + N + N L+KGLC R+ EA L +++ C P+ +
Sbjct: 111 MGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTV 170
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
+++ L A AL L M N+ G C P+VVT T +IDGLCK
Sbjct: 171 SYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVF 230
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M+D G++P+ T N + GK +E +LE M R + P
Sbjct: 231 QQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKP--------------- 275
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
D Y+Y L+N C + + L M+ G+ D +N F A
Sbjct: 276 ------DCYTYGSLLNYLCALSEMHSFLDL---MVENGLSPDHHIFNIFFSAYA------ 320
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
K G + +AM +F+ + H + LID LCK+GR+ A F+
Sbjct: 321 -----------KCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQ 369
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ N G+TP++V +N +++G C + ++A L+ +M + G+ PN
Sbjct: 370 MI-NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPN 413
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 160/358 (44%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL----- 71
+P+ FN G I +A +F K+ PNV+ + L AL L
Sbjct: 305 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 364
Query: 72 --FEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMT 119
F +M+NE GV P++V +++ GLC D + M+DQG+ P+ V N +
Sbjct: 365 VKFNQMINE-GVT--PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLI 421
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
NL G++ E L+++M V P+ +Y L+ G+ + G
Sbjct: 422 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLS 481
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
+YN L++GYC ++DA L REML +G+ TYNT+ +
Sbjct: 482 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 541
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ D + Y ++GL K+ V EA K+F ++ + L I T +I L K
Sbjct: 542 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 601
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + A D+F + N GL P+VVTY ++ +EG ++ + L ME+ G PN
Sbjct: 602 GGRKEDAMDLFAAIPAN-GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPN 658
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 154/352 (43%), Gaps = 54/352 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVI 59
+GR V +++ TPN+V FNSL+ GLCT + A L ++ L+ C PN +
Sbjct: 357 LGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGIC-PNAV 415
Query: 60 TFNTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
FNTL N+ +++ GV +PD + T +I G C G
Sbjct: 416 FFNTLICNLCNVGRVMEGRRLIDLMEHVGV--RPDAFSYTPLISGYCLAGRTDEAEKVFD 473
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G+ P VT N + ++++A CL M+++ V P TYNT++ G
Sbjct: 474 GMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTK 533
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + D+Y+YNI++NG CK V++A + + + S+G++ + T
Sbjct: 534 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIIT-- 591
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+T I L K G +AM +F+AI + V + T + + L +
Sbjct: 592 ---------------FTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIE 636
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G L+ +D M+ G P+ N ++ G +A L ++E
Sbjct: 637 EGSLE-EFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDE 687
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 60/352 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA G F +++ + PN T+N LI G + G+ E ++ +K++ P+ T+
Sbjct: 225 RAEGVF---QQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYG 281
Query: 63 TL-----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
+L AL ++ F +++ E G+ PD K G M G
Sbjct: 282 SLLNYLCALSEMHSFLDLMVENGL--SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 339
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+ P+VV + D L K G++++A MI V PN +N+
Sbjct: 340 LSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNS--------------- 384
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
L+ G C E A L EML +GI +A +NTL
Sbjct: 385 ------LVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLID 438
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V PD+ YT I G G EA KVF + + T T N L+ G C
Sbjct: 439 LMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSAS 498
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
R+ A+ +F +++ G+TP VVTYN ++HG + + +A L L+M +G
Sbjct: 499 RIDDAYCLFREMLRK-GVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 549
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V P++ Y+ I L + G + + F I + N L+ GLC R+ A
Sbjct: 94 VAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAM 153
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
D+ M G TPD V+Y+I++ GFC E + ++A LL
Sbjct: 154 DVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELL 192
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 161/343 (46%), Gaps = 61/343 (17%)
Query: 1 MGRASGGFVLLGRILMS--CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58
+GR F L +++ + C PN T+N+L+ GLC + R+ A + + P+V
Sbjct: 109 LGRVDAAFDLFRKMVAAGGC-RPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDV 167
Query: 59 ITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF----- 102
+T+NTL AL L +E + F + + P +V+ II GLC+ D
Sbjct: 168 VTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNE 227
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D+ P++VT +V+ D L K +++EA LL+ M+ S+
Sbjct: 228 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMV---------------------SE 266
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GCR D+ +Y L+ G+ ++ A+ L R M+S+G PD
Sbjct: 267 GCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG-----------------CIPDVVT 309
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT ID L K G V +A ++F + +KC + T + LI G C+ R+ D +M
Sbjct: 310 YTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRV----DEGGKVM 365
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTYN MI G ++++A G+ +M E G P+
Sbjct: 366 REMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPD 408
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 152/352 (43%), Gaps = 54/352 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALVALNLFEEMVNEFGV 81
VT+N LI+G C + A L ++++V C+ + L + + F
Sbjct: 26 VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85
Query: 82 I-----CKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVMTDNLSKD 125
+PDVV+ T +I+GLCK G + G RP+ T N + D L K
Sbjct: 86 SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQ 145
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHDVYSY 171
+++ A ++ +RD P+ TYNTLM + A +++ G + S+
Sbjct: 146 DRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 205
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N +I G C+ R + DA+ + EM+ + TY+ + M
Sbjct: 206 NAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 265
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD YT + G G + A+ + + + C+ + T +ID LCK+GR+
Sbjct: 266 EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDD 325
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +IF L+ N +P+VVTY+ +I G+C+ + + + M E PN
Sbjct: 326 AHEIFRELVANK-CSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPN 373
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 35/255 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ + P +V+FN++I GLC R+ +A +F ++ PN++T
Sbjct: 180 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 239
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++ + A L + MV+E C+PD+V T ++ G G
Sbjct: 240 YSVVIDGLCKSDQLDEAQQLLDRMVSEG---CRPDLVAYTPLVLGFSAAGRLDSALGLLR 296
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ QG PDVVT V+ D L K G++++A+ + ++ +PN TY+ L+ G+ S
Sbjct: 297 RMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRAS 356
Query: 162 K-----------GCRHDVYSYNILINGYCK-DRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ CR +V +YN +I G DRN E+A + REM G DA TY L
Sbjct: 357 RVDEGGKVMREMACRPNVVTYNTMIWGLSMVDRN-EEAYGMFREMSECGFVPDARTYRGL 415
Query: 210 FMAINNVPPDSHVYT 224
A+ + HV T
Sbjct: 416 KRALRMIDQPPHVLT 430
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 42/255 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F P++VT+N+L+ L GR+ EA F ++ P +++FN + AL
Sbjct: 163 FAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 222
Query: 70 NLFEEMVN-EFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+F EM++ +F P++VT + +IDGLCK M+ +G RPD+V +
Sbjct: 223 EVFNEMIDRDF----HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 278
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
S G+++ A LL M+ + P+ TY ++D + C
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y+ LI GYC+ V++ + REM R + TYNT+ ++ V + Y
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNEEAYG 395
Query: 225 TYIDGLYKNGFVLEA 239
+ + + + GFV +A
Sbjct: 396 MFRE-MSECGFVPDA 409
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F + I C G++ EA +LF K+ PNV+TFNT+ ++
Sbjct: 257 SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTV-----------IDGL 305
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ C + M+++GM P ++T +++ L++ ++ +A +L+ M
Sbjct: 306 GM--------CGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT 357
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
++ PN YN L+D F SKG +YN LI GYCK+ +
Sbjct: 358 KKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQAD 417
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A L +EMLS G + ++ ++ M + N+ P + TT I
Sbjct: 418 NAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLI 477
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL K+G +A++++ N V+ T N L+ GLC+ G+L A+ I ++ G
Sbjct: 478 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGC 536
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I G C + + +A L +M + GL+P+
Sbjct: 537 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPD 574
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 86/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + PN+VTFN++I GL GR EA +K+ +P +IT+
Sbjct: 274 GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 333
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMM 104
+ L + L + + + + V+ + P+V+ N+ID + G M+
Sbjct: 334 SIL-VKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 392
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ------------------------ 140
+G+ T N + K+G+ + A LL+ M+
Sbjct: 393 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 452
Query: 141 -----------RDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILI 175
R+++P TL+ G F + +KG D + N L+
Sbjct: 453 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 512
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G C+ +++A + +E+L G D +YNTL M +
Sbjct: 513 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 572
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD++ Y+ I GL+ V EA++ + + + + T + +IDG CK R + +
Sbjct: 573 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 632
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +M + + P+ V YN +I +C+ G+ A L DM+ G+ PN
Sbjct: 633 FDEMM-SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 679
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A LL +L F N +F S+I LC+ A R ++ + P
Sbjct: 414 GQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLL 473
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
TL AL L+ + +N+ V+ D T ++ GLC+ G +D+ R
Sbjct: 474 TTLISGLCKHGKHSKALELWFQFLNKGFVV---DTRTSNALLHGLCEAG-KLDEAFRIQK 529
Query: 110 --------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
D V+ N + K++EA L+ M++R + P+ TY+ L+
Sbjct: 530 EILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMN 589
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ +W G DVY+Y+++I+G CK E+ EM+S+ ++ + YN
Sbjct: 590 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 649
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L A + P+S YT+ I G+ V EA +F +
Sbjct: 650 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 709
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG K+G++ + + M + + P+ +TY +MI G+ ++G +
Sbjct: 710 GLEPNVFHYTALIDGYGKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTE 768
Query: 310 ANGLLLDMEETGLEPN 325
A+ LL +M E G+ P+
Sbjct: 769 ASRLLNEMREKGIVPD 784
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 56/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVI 82
T+N+LIKG C G+ A RL K++ + N +F ++ L + +F+ + G +
Sbjct: 402 TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEM 461
Query: 83 C----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
P T +I GLCK G +++G D T N + L + GK+
Sbjct: 462 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 521
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
+EA IQ+++ +GC D SYN LI+G C + +++A
Sbjct: 522 DEA-----FRIQKEI----------------LGRGCVMDRVSYNTLISGCCGKKKLDEAF 560
Query: 189 SLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGL 230
EM+ G++ D TY+ L + N + PD + Y+ IDG
Sbjct: 561 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 620
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K E + F + + N LI C+ GRL +A ++ M++ G++P+
Sbjct: 621 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPN 679
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I G + ++A L +M GLEPN
Sbjct: 680 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 714
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 70/345 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + L F + T N+L+ GLC G++ EA R+ K++ C + +++
Sbjct: 484 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 543
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
NTL A +EMV G+ KPD T + +I GL F M++
Sbjct: 544 NTLISGCCGKKKLDEAFMFLDEMVKR-GL--KPDNYTYSILICGL----FNMNKVEEAIQ 596
Query: 107 --------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
GM PDV T +VM D K + EE + M+ ++V PNT YN L
Sbjct: 597 FWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL----- 651
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
I YC+ + A+ L +M +GI ++ TY +L
Sbjct: 652 ----------------IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 695
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + + P+ YT IDG K G +++ + + + T
Sbjct: 696 VEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 755
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+I G + G + A + + M+ G+ PD +TY I+G+ K+G
Sbjct: 756 MIGGYARDGNVTEASRLLNE-MREKGIVPDSITYKEFIYGYLKQG 799
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 60/240 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ T++ +I G C R E F ++ PN + +N L +AL L
Sbjct: 608 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 667
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMTDN 121
E+M ++ G+ P+ T T++I G+ K F M +G+ P+V + D
Sbjct: 668 REDMKHK-GI--SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 724
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K G+M + CLL M ++V+PN T Y ++I GY +D
Sbjct: 725 YGKLGQMVKVECLLREMHSKNVHPNKIT---------------------YTVMIGGYARD 763
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
NV +A L EM +GI PDS Y +I G K G VLEA K
Sbjct: 764 GNVTEASRLLNEMREKGI-----------------VPDSITYKEFIYGYLKQGGVLEAFK 806
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ VF + N + TCN L+ L + + + F ++ + G++PDV + I
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAI 267
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK G+ ++A L MEE G+ PN
Sbjct: 268 NAFCKGGKVEEAVKLFSKMEEAGVAPN 294
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 152/337 (45%), Gaps = 63/337 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ ++N L+ GLC E R EA L L++ D G
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALEL---LHIMADD------------------------G 81
Query: 81 VICKPDVVTCTNIIDGLCKDG---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
C PDVV+ + +I+G K+G M+DQ + P+VVT N + L K +++A +L
Sbjct: 82 GDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTT 141
Query: 138 MIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRN 183
M++ V P+ TYN+++ GF S G DV +YN L++ CK+
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201
Query: 184 VEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTT 225
+A + M G++ D TTY TL M N + P+ +V++
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ K V EAM VFS + T +ID LCK GR++ A F ++ +
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI-DE 320
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL PD + YN +IH C + +KA L L+M + G+
Sbjct: 321 GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 55/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V+++++I G EG + K+ PNV+T+N++ AL ++ +
Sbjct: 86 PDVVSYSTVINGFFKEGDL-------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 138
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT N + D L K
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P+ TY TL+ G+A G + Y
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
++IL+ Y K VE+A+ + +M +G+ +A TY T+ ID L
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV-----------------IDVL 301
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+G V +AM F + + N LI LC + + A ++F + M + G+
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELF-LEMLDRGICLS 360
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +N +I CKEG+ ++ L M G++P+
Sbjct: 361 TIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 163/392 (41%), Gaps = 76/392 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ V L ++ P++VT+NSL+ LC GR EA ++F + P++ T+
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPD-----VVTCT-----NIIDGLCKDGFM 103
TL ALV ++ +++ G+ P+ ++ C + + + M
Sbjct: 225 GTLLQGYATKGALVEMHGLLDLMVRNGI--HPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAWW 160
QG+ P+ VT + D L K G++E+A E MI + P++ YN+L+ F W
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342
Query: 161 SKG------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN- 207
K C ++ +N +I+ +CK+ V ++ L M+ G++ D T
Sbjct: 343 EKAEELFLEMLDRGICLSTIF-FNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR 401
Query: 208 ---------TLFMAI-----------------------NNVPPDSH------VYTTYIDG 229
+LF+ I N +S Y + G
Sbjct: 402 FLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHG 461
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L KN +A+++F + L T N +ID L K+GR A D+F N GL P
Sbjct: 462 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSN-GLVP 520
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ TY +M +G ++ + L L ME+ G
Sbjct: 521 NYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 552
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV+SYNIL+NG C + ++A+ L M +G + PPD Y+T
Sbjct: 50 DVFSYNILLNGLCDENRSQEALELLHIMADDG---------------GDCPPDVVSYSTV 94
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + + + + + + T N +I LCK + A ++ ++++ G
Sbjct: 95 INGFFKEGDLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-G 146
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD +TYN ++HGFC GQ ++A L M G+EP+
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD 185
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 151/365 (41%), Gaps = 77/365 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ L+ + ++ EA +F K+ +PN +T+ T+ V
Sbjct: 243 LLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLC 302
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
A+ FE+M++E +PD + ++I LC ++ F M+D+G+
Sbjct: 303 KSGRVEDAMLYFEQMIDEG---LRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICL 359
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY- 169
+ N + D+ K+G++ E+ L ++M++ V P+ T + G A ++Y
Sbjct: 360 STIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFL-GSARRDYSLFVNIYF 418
Query: 170 -----------------------------------SYNILINGYCKDRNVEDAVSLCREM 194
+YNI+++G CK++ +DA+ + + +
Sbjct: 419 IFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNL 478
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
++ +A T+N + ID L K G EA +F A ++ V
Sbjct: 479 CLMDLKLEARTFNIM-----------------IDALLKVGRNDEAKDLFVAFSSNGLVPN 521
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T + + + G L+ D + M++ G T D N ++ + G+ +A L
Sbjct: 522 YWTYRLMAENIIGQGLLE-ELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYL 580
Query: 315 LDMEE 319
++E
Sbjct: 581 SMIDE 585
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 61/342 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + +L R+ F+P++VT+N LI LC+ G + A +L C P V+T+
Sbjct: 141 RIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYT 200
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
L A+ L +EM+ + +PD+ T +II G+C++G+ +
Sbjct: 201 ILIEATLLQGGIDEAMKLLDEMLE---INLQPDMFTYNSIIRGMCREGYVDRAFQIISSI 257
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G PDV+T N++ L GK E L+ M+ R G
Sbjct: 258 SSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVAR---------------------G 296
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C +V +Y++LI+ C+D VE+ V L ++M +G++ PD + Y
Sbjct: 297 CEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLK-----------------PDGYCY 339
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I L K G V A++V + + CV I N ++ LCK R A IF L +
Sbjct: 340 DPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGE 399
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +P+ +YN M G +A G++L+M + G++P+
Sbjct: 400 -VGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPD 440
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 41/265 (15%)
Query: 84 KPDVVTCTNIIDGLCKDG---------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
KPDVV CT +I GL +++ PD++ N + + +++ A +
Sbjct: 89 KPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQV 148
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCK 180
L+ M + +P+ TYN L+ + C+ V +Y ILI
Sbjct: 149 LDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLL 208
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+++A+ L EML ++ D TYN++ I G+ + G+V A
Sbjct: 209 QGGIDEAMKLLDEMLEINLQPDMFTYNSI-----------------IRGMCREGYVDRAF 251
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ S+I + + T N L+ GL G+ + +++ ++ G +VVTY+++I
Sbjct: 252 QIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVAR-GCEANVVTYSVLISS 310
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C++G+ ++ GLL DM++ GL+P+
Sbjct: 311 VCRDGKVEEGVGLLKDMKKKGLKPD 335
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 140/321 (43%), Gaps = 63/321 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F ++ I + P+++T+N L++GL +G+ L + C+ NV+T+
Sbjct: 245 GYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTY 304
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L + L ++M + G+ KPD +I LCK+G
Sbjct: 305 SVLISSVCRDGKVEEGVGLLKDMKKK-GL--KPDGYCYDPLIAALCKEGRVDLAIEVLDV 361
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G PD+V N + L K + +EA + E + + +PN +YN++ A WS
Sbjct: 362 MISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFS--ALWST 419
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G H V + +++ EML +G+ D TYN+L
Sbjct: 420 G--HKVRALGMIL-----------------EMLDKGVDPDGITYNSL------------- 447
Query: 223 YTTYIDGLYKNGFVLEAMKVFS--AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
I L ++G V EA+++ + + +C ++ + N ++ GLCK+ R+ A ++
Sbjct: 448 ----ISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAA 503
Query: 281 LMQNPGLTPDVVTYNIMIHGF 301
M + G P+ TY +I G
Sbjct: 504 -MVDKGCRPNETTYTFLIEGI 523
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + + PN T+N +I LC G++ EA R+ +++ P+ + + TL
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 269
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A LF+EM PD +T T +I GLC+ G +M+ + + P
Sbjct: 270 KLGNVSSAYRLFDEMQKR---KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEP 326
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT + D K+GKM+EA L M+Q + PN TY L DG
Sbjct: 327 DEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELL 386
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG ++Y+YN L+NG CK N++ AV L ++M G DA TY TL
Sbjct: 387 HEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTL------- 439
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
+D K+ ++ A ++ + + + T+ T N L++G C G L+
Sbjct: 440 ----------MDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEK 489
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ G+ P+ TYN +I +C + + M G+ P+
Sbjct: 490 LLKWMLEK-GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 537
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 60/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S + L + +P+ +T+ ++I GLC GR++EA +LF ++ +P+ +T
Sbjct: 271 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 330
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A +L +M+ + G+ P++VT T + DGLCK G
Sbjct: 331 YTALIDGYCKEGKMKEAFSLHNQML-QMGLT--PNIVTYTALADGLCKCGEVDTANELLH 387
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M +G+ ++ T N + + L K G +++A L++ M +P+ TY TLMD +
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447
Query: 162 KGCR-HD-------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ R H+ V ++N+L+NG+C +ED L + ML +GI +ATTYN
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 507
Query: 208 TLFMAI---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+L NN+ + +Y G+ G V + GN T N LI G
Sbjct: 508 SLIKQYCIRNNMRATTEIYR----GMCAKGVVPD--------GN--------TYNILIKG 547
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
CK +K AW H M G V +YN +I GF K + +A L M GL
Sbjct: 548 HCKARNMKEAW-FLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGL 604
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 55/310 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++L TPN+VT+ +L GLC G + A L ++ + N+ T+
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 401
Query: 62 NTLA---------LVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N+L A+ L ++M V F PD VT T ++D CK
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDMEVAGF----HPDAVTYTTLMDAYCKSREMVRAHELLR 457
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+ ++P VVT NV+ + G +E+ LL+ M+++ + PN TYN+L+ +
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KG D +YNILI G+CK RN+++A L R+M+ +G ++YN
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYN 577
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L I G YK LEA ++F + V E N D
Sbjct: 578 AL-----------------IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYD 620
Query: 268 IGRLKIAWDI 277
G++++ ++
Sbjct: 621 EGKMELTLEL 630
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 136/332 (40%), Gaps = 65/332 (19%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVV 88
++ + T + L+ AR K + F +PN+ + A LF++M+N +G++ D
Sbjct: 131 IVAQIATASKDLKMAR--KLIQDFWVNPNL---DVGVSFARKLFDKMLN-YGLLISVD-- 182
Query: 89 TCTNIIDGLCKD-----------------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+C I L +D M +G++P+ T N + L K GK+ EA
Sbjct: 183 SCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEA 242
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+L MI + P+ Y TL+DGF CK NV A L
Sbjct: 243 ERVLREMISEGIAPDGVIYTTLIDGF---------------------CKLGNVSSAYRLF 281
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
EM I D TY + M + PD YT IDG K
Sbjct: 282 DEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKE 341
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + EA + + + I T L DGLCK G + A ++ H M GL ++ T
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE-MCRKGLELNIYT 400
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +++G CK G +A L+ DME G P+
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 432
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 166/372 (44%), Gaps = 57/372 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L+ + F+P + T+N++I GLC G+ A +F ++ P+ T+ +L
Sbjct: 279 AFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 338
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A+ N+F +M + V PD+V ++++ + G + + G
Sbjct: 339 EACKKGDAVETENIFSDMRSRDVV---PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 395
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ PD V ++ + G + EA L M+Q+ + TYNT++ G
Sbjct: 396 LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 455
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+G D Y+ ILI+G+CK N+++A+ L ++M + I+ D TYNTL
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF 515
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + P ++ ++ L G + EA +V+ + + T+
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTV 575
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
CN +I G C+ G +IF M + G PD ++YN +I+GF KE KA GL+
Sbjct: 576 MICNSMIKGYCRSGNASDG-EIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVK 634
Query: 316 DMEET--GLEPN 325
MEE GL P+
Sbjct: 635 KMEEKQGGLVPD 646
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 49/351 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N+ T N ++ LC +G++ + ++ P+++T+NTL A + L EE
Sbjct: 224 NVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELM 283
Query: 80 GVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+ P V T +I+GLCK G M+ G+ PD T + K
Sbjct: 284 HAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 343
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G E + M RDV P+ ++++M F + G D Y
Sbjct: 344 GDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 403
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
ILI GYC+ + +A++L EML +G D TYNT+ M
Sbjct: 404 TILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 463
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ PDS+ T IDG K G + AM++F + + L + T N L+DG K+G +
Sbjct: 464 RGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDT 523
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A +I+ ++ + P ++++I+++ C +G +A + +M ++P
Sbjct: 524 AKEIWADMVSKE-ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 33/252 (13%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G+ +V TLN+M + L KDGKME+ L + ++ V P+ TYNTL+ +
Sbjct: 219 SGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEE 278
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A SKG VY+YN +ING CK E A + EML G+ D+TTY +L M
Sbjct: 279 AFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 338
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+V PD +++ + ++G + +A+ F+++ +
Sbjct: 339 EACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 398
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
LI G C+ G + A ++ + ++Q G DVVTYN ++HG CK +A+ L
Sbjct: 399 DNVIYTILIQGYCRKGMISEAMNLRNEMLQQ-GCAMDVVTYNTILHGLCKRKMLGEADKL 457
Query: 314 LLDMEETGLEPN 325
+M E GL P+
Sbjct: 458 FNEMTERGLFPD 469
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 146/340 (42%), Gaps = 56/340 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ V + LI+G C +G I EA L ++ C +V+T+NT+ A L
Sbjct: 398 PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 457
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM E G+ PD T T +IDG CK G M ++ ++ DVVT N + D
Sbjct: 458 FNEMT-ERGLF--PDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDG 514
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNT----------CTYNTLMDGFAWW----SKGCRHD 167
K G ++ A + M+ +++ P C+ L + F W SK +
Sbjct: 515 FGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPT 574
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V N +I GYC+ N D +M+SEG D +YNTL I
Sbjct: 575 VMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTL-----------------I 617
Query: 228 DGLYKNGFVLEAMKVFSAIGNHK--CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
G K + +A + + + V + T N ++ G C+ ++K A + +++
Sbjct: 618 YGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIER- 676
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PD TY +I+GF + +A +M + G P+
Sbjct: 677 GVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPD 716
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+H S + +I+ + + DA S M+ + N+L +N + V+
Sbjct: 100 KHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFD 159
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I + + EA + F+ + + ++I+ CN LI L +IG +++AW I+ + ++
Sbjct: 160 LLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRS 219
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +V T NIM++ CK+G+ +K L +++E G+ P+
Sbjct: 220 -GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPD 259
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 152/337 (45%), Gaps = 63/337 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ ++N L+ GLC E R EA L L M ++ G
Sbjct: 49 PDVFSYNILLNGLCDENRSQEA--------------------------LELLHIMADDGG 82
Query: 81 VICKPDVVTCTNIIDGLCKDG---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
C PDVV+ + +I+G K+G M+DQ + P+VVT N + L K +++A +L
Sbjct: 83 -DCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTT 141
Query: 138 MIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRN 183
M++ V P+ TYN+++ GF S G DV +YN L++ CK+
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201
Query: 184 VEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTT 225
+A + M G++ D TTY TL M N + P+ +V++
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ K V EAM VFS + T +ID LCK GR++ A F ++ +
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI-DE 320
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL PD + YN +IH C + +KA L L+M + G+
Sbjct: 321 GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 55/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V+++++I G EG + L ++++ PNV+T+N++ AL ++ +
Sbjct: 86 PDVVSYSTVINGFFKEGDL--DKMLDQRIS-----PNVVTYNSIIAALCKAQTVDKAMEV 138
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT N + D L K
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P+ TY TL+ G+A G + Y
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
++IL+ Y K VE+A+ + +M +G+ +A TY T+ ID L
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTV-----------------IDVL 301
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K+G V +AM F + + N LI LC + + A ++F + M + G+
Sbjct: 302 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELF-LEMLDRGICLS 360
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +N +I CKEG+ ++ L M G++P+
Sbjct: 361 TIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPD 395
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 123/292 (42%), Gaps = 58/292 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ V L ++ P++VT+NSL+ LC GR EA ++F + P++ T+
Sbjct: 165 GQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTY 224
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
TL G K +V ++D M+ G+ P+ +++
Sbjct: 225 GTLLQ-------------GYATKGALVEMHGLLD------LMVRNGIHPNHYVFSILVCA 265
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+K K+EEA + M Q+ +NPN TY T++D CK
Sbjct: 266 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVL---------------------CKS 304
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
VEDA+ +M+ EG+R D+ YN+L ++ D K A +
Sbjct: 305 GRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSL-----------CIFDKWEK------AEE 347
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
+F + + L+ N +ID CK GR+ + +F LM G+ PD++T
Sbjct: 348 LFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFD-LMVRIGVKPDIIT 398
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV+SYNIL+NG C + ++A+ L M +G + PPD Y+T
Sbjct: 50 DVFSYNILLNGLCDENRSQEALELLHIMADDG---------------GDCPPDVVSYSTV 94
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + + + + + + T N +I LCK + A ++ ++++ G
Sbjct: 95 INGFFKEGDLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-G 146
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD +TYN ++HGFC GQ ++A L M G+EP+
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD 185
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 165/349 (47%), Gaps = 57/349 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL I + PN++T+ S+I G C G++ A + K + C PN T+N+L LV
Sbjct: 334 LLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLV 393
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GF----MMDQ-GMRP 110
A+ L +M + G+I P+V+T T ++ G C + F MM+Q G++P
Sbjct: 394 KDKKLHKAMALLTKMQKD-GII--PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKP 450
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D V+TD L K G+ EEA ++++ V Y TL+DGF+
Sbjct: 451 DEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKAGNTDFAATLI 507
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+GC D Y+Y++L++ CK + + +A+ + +M GI+ T+F
Sbjct: 508 ERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC------TIF------ 555
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
YT ID + + G A ++++ + + + T I+ CK GRL+ A D
Sbjct: 556 -----AYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAED 610
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + M+ G+ PDVVTYNI+I G G +A L M EPN
Sbjct: 611 LI-LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 658
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 159/376 (42%), Gaps = 62/376 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR V G + P+ VT+N++IK C EG + A R F+ L +P T
Sbjct: 52 MGRVYSQLVQDGLL------PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFT 105
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
N L L A LF M+ G C+ + + T +I GLC
Sbjct: 106 CNALVLGYCRTGELRKACWLF-LMMPLMG--CQRNEYSYTILIQGLCDAKCVRKALVLFL 162
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M G P+V + L K G++ +A L + M Q V P+ TYN ++ G++
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 222
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ GC D ++YN LI G C D+ E+A L + EG T+
Sbjct: 223 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFT 281
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M + D V+ I+ L K + EA ++ + I +
Sbjct: 282 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 341
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + T +IDG CK G++ IA ++ M M+ G P+ TYN +++G K+ + K
Sbjct: 342 GLVPNVITYTSIIDGYCKSGKVDIALEVLKM-MERDGCQPNAWTYNSLMYGLVKDKKLHK 400
Query: 310 ANGLLLDMEETGLEPN 325
A LL M++ G+ PN
Sbjct: 401 AMALLTKMQKDGIIPN 416
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 162/372 (43%), Gaps = 57/372 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L + + P+++T+N++I G GR+ +A ++ + + C P+ T+
Sbjct: 187 GRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTY 246
Query: 62 NTLAL--------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-KDGF---------M 103
NTL A L V E P VVT TN+I+G C + F M
Sbjct: 247 NTLIYGLCDQKTEEAEELLNNAVKEGFT---PTVVTFTNLINGYCMAEKFDDALRMKNKM 303
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
M + D+ + ++L K +++EA LL + + PN TY +++DG+ K
Sbjct: 304 MSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKV 363
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GC+ + ++YN L+ G KD+ + A++L +M +GI + TY TL
Sbjct: 364 DIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTL 423
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M N + PD H Y D L K G EA +S I
Sbjct: 424 LQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGV 480
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
LT LIDG K G A + ++ + G TPD TY++++H CK+ + +A
Sbjct: 481 ALTKVYYTTLIDGFSKAGNTDFAATLIERMI-DEGCTPDSYTYSVLLHALCKQKRLNEAL 539
Query: 312 GLLLDMEETGLE 323
+L M G++
Sbjct: 540 PILDQMSLRGIK 551
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 107/287 (37%), Gaps = 63/287 (21%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL----- 71
S P+ T+ I C EGR+ +A L K+ P+V+T+N L ++
Sbjct: 583 SGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDR 642
Query: 72 -FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------------------------MM 104
F + G C+P+ T ++ L K M+
Sbjct: 643 AFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMV 702
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWS 161
G+ P V T + + K G++EEA LL+ M + ++PN Y L+ ++
Sbjct: 703 KHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFE 762
Query: 162 K-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
K G + + SY +L+ G C + + E SL ++L G D + L
Sbjct: 763 KALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILN 822
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
DGL K G+V ++ S + C ++ +T
Sbjct: 823 -----------------DGLLKAGYVDICFQMLSIMEKRYCCISSQT 852
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A++ G+ + L+ + N + L + + ++ L+Q+ GL PD VTYN M
Sbjct: 16 DAIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQD-GLLPDTVTYNTM 74
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I +CKEG A+ + E GLEP
Sbjct: 75 IKSYCKEGDLTTAHRYFRLLLEGGLEPE 102
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 74/208 (35%), Gaps = 54/208 (25%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT---------------------- 208
YN + + E + +++ +G+ D TYNT
Sbjct: 36 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95
Query: 209 -------------------------------LFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
L M + + + YT I GL V
Sbjct: 96 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 155
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A+ +F + C + LI GLCK GR+ A +F + QN G+ P V+TYN M
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQN-GVVPSVMTYNAM 214
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+ K G+ A + ME+ G P+
Sbjct: 215 IVGYSKLGRMNDALKIKELMEKNGCHPD 242
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 152/337 (45%), Gaps = 63/337 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ ++N L+ GLC E R EA L L++ D G
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALEL---LHIMADD------------------------G 81
Query: 81 VICKPDVVTCTNIIDGLCKDG---FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
C PDVV+ + +I+G K+G M+DQ + P+VVT N + L K +++A +L
Sbjct: 82 GDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTT 141
Query: 138 MIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRN 183
M++ V P+ TYN+++ GF S G DV +YN L++ CK+
Sbjct: 142 MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 201
Query: 184 VEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTT 225
+A + M G++ D TTY TL M N + P+ +V++
Sbjct: 202 CTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSI 261
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ K V EAM VFS + T +ID LCK GR++ A F ++ +
Sbjct: 262 LVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI-DE 320
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL PD + YN +IH C + +KA L L+M + G+
Sbjct: 321 GLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGI 357
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 154/353 (43%), Gaps = 66/353 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V+++++I G EG + K+ PNV+T+N++ AL ++ +
Sbjct: 86 PDVVSYSTVINGFFKEGDL-------DKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 138
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT N + D L K
Sbjct: 139 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 198
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P+ TY TL+ G+A G + Y
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
++IL+ Y K VE+A+ + +M +G+ +A TY T+ M
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PDS VY + I L +A ++F + + L+ N +ID CK GR+
Sbjct: 319 DEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F LM G+ PD++T G++ +A L + GL PN
Sbjct: 379 ESGKLFD-LMVRIGVKPDIITL----------GRNDEAKDLFVAFSSNGLVPN 420
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 163/365 (44%), Gaps = 71/365 (19%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----- 65
L ++L +PN+VT+NS+I LC + +A + + P+ +T+N++
Sbjct: 104 LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163
Query: 66 ----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
A+ ++M ++ GV +PDVVT +++D LCK+G M +G++PD
Sbjct: 164 SGQPKEAIVFLKKMRSD-GV--EPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 220
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
+ T + + G + E + LL++M++ ++PN ++ L+ +A K
Sbjct: 221 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 280
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
G + +Y +I+ CK VEDA+ +M+ EG+R D+ YN+L ++
Sbjct: 281 KMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340
Query: 214 --------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIE 256
+ + + + ID K G V+E+ K+F IG ++T
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIIT-- 398
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+GR A D+F N GL P+ TY +M +G ++ + L L
Sbjct: 399 -----------LGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLS 446
Query: 317 MEETG 321
ME+ G
Sbjct: 447 MEDNG 451
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 23/159 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV+SYNIL+NG C + ++A+ L M +G + PPD Y+T
Sbjct: 50 DVFSYNILLNGLCDENRSQEALELLHIMADDG---------------GDCPPDVVSYSTV 94
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G +K G + + + + + + T N +I LCK + A ++ ++++ G
Sbjct: 95 INGFFKEGDLDKML-------DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS-G 146
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ PD +TYN ++HGFC GQ ++A L M G+EP+
Sbjct: 147 VMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPD 185
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 159/359 (44%), Gaps = 59/359 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ P +N++I G + GR +A +L ++L C P+V++F
Sbjct: 298 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 357
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N++ AL+LFE M + +P+ T IID LC G
Sbjct: 358 NSILTCLGKKRKVDEALSLFEVMKKD----AEPNSSTYNIIIDMLCLGGRVEEAYRILDE 413
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + P+++T+N+M D L K K+EEA + E QR NP+ TY +L+DG K
Sbjct: 414 MEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG--KK 471
Query: 163 GCRHDVYS----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + Y Y LI + ED + +E++ G + D T
Sbjct: 472 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 531
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N TY+D ++K G V + +F I ++ + + + + LI GL
Sbjct: 532 N-----------------TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLT 574
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G+ + +IFH + Q G D YN ++ GFCK G+ KA +L +M+E ++P
Sbjct: 575 KAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPT 632
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++L + N V + SLI+ GR + ++FK+L C P++
Sbjct: 472 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 531
Query: 62 NTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
NT E E + +G + PDV + + +I GL K G M
Sbjct: 532 NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAGQARETSNIFHAM 589
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
QG D N + D K GK+ +A +LE M ++ V P TY ++DG A
Sbjct: 590 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 649
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG +V Y+ LI+G+ K +++A + EM+ +G+ + T+N+L
Sbjct: 650 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 709
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+D L K + EA+ F ++ KC T + LI+GLC++
Sbjct: 710 -----------------LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 752
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+VVTY MI G K G A L + G P+
Sbjct: 753 KYNKAF-VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 807
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 134/317 (42%), Gaps = 54/317 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G ++ I F P++ +++ LI GL G+ E + +F + + +
Sbjct: 542 GEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAY 601
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMM--- 104
N + A + EEM + +P V T I+DGL K + +M+
Sbjct: 602 NAVVDGFCKSGKVHKAYEILEEMKEK---CVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 658
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+G+ +VV + + D K G+++EA +LE M+++ + PN T+N+L+D +
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE 718
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + Y+Y+ILING C+ + A ++M +G+ + TY T
Sbjct: 719 INEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 778
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + V PD+ + I+G+ +EA +VF
Sbjct: 779 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRG 838
Query: 251 CVLTIETCNCLIDGLCK 267
C + I++C L+D L K
Sbjct: 839 CRINIKSCISLLDALNK 855
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N+V ++SLI G GRI EA + +++ PNV T+N+L ALV E + F
Sbjct: 667 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 726
Query: 80 GVI----CKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLSKD 125
+ C P+ T + +I+GLC+ F M QG+ P+VVT M L+K
Sbjct: 727 QSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKV 786
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSY 171
G + +A L E P+ ++N L++G + + +GCR ++ S
Sbjct: 787 GNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSC 846
Query: 172 NILINGYCKDRNVEDAV 188
L++ K +E A
Sbjct: 847 ISLLDALNKSECLEQAA 863
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
R +Y +LI + R E A+ L R+M G H++T
Sbjct: 176 RPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGV-----------------HLFT 218
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T + L + G V +A+ + + I N ID K G + +AW FH L +
Sbjct: 219 TLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHEL-KA 277
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL PD V+Y MI CK G+ +A L ME
Sbjct: 278 QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 311
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ L + ++++A + VM + P Y L+ A + G
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
V+ + L+ ++ V DA++L E+ + D YN
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 269
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ + PD YT+ I L K G + EA ++F+ + + V N +I G
Sbjct: 270 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 329
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR + A+ + L + G P VV++N ++ K+ + +A L M++ EPN
Sbjct: 330 GSAGRFEDAYKLLERLRER-GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPN 387
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F + I C G++ EA +LF K+ PNV+TFNT+ ++
Sbjct: 246 SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTV-----------IDGL 294
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ C + M+++GM P ++T +++ L++ ++ +A +L+ M
Sbjct: 295 GM--------CGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT 346
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
++ PN YN L+D F SKG +YN LI GYCK+ +
Sbjct: 347 KKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQAD 406
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A L +EMLS G + ++ ++ M + N+ P + TT I
Sbjct: 407 NAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLI 466
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL K+G +A++++ N V+ T N L+ GLC+ G+L A+ I ++ G
Sbjct: 467 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGC 525
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I G C + + +A L +M + GL+P+
Sbjct: 526 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPD 563
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 86/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + PN+VTFN++I GL GR EA +K+ +P +IT+
Sbjct: 263 GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 322
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMM 104
+ L + L + + + + V+ + P+V+ N+ID + G M+
Sbjct: 323 SIL-VKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 381
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ------------------------ 140
+G+ T N + K+G+ + A LL+ M+
Sbjct: 382 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 441
Query: 141 -----------RDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILI 175
R+++P TL+ G F + +KG D + N L+
Sbjct: 442 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 501
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G C+ +++A + +E+L G D +YNTL M +
Sbjct: 502 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 561
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD++ Y+ I GL+ V EA++ + + + + T + +IDG CK R + +
Sbjct: 562 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 621
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +M + + P+ V YN +I +C+ G+ A L DM+ G+ PN
Sbjct: 622 FDEMM-SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 668
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A LL +L F N +F S+I LC+ A R ++ + P
Sbjct: 403 GQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLL 462
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP-- 110
TL AL L+ + +N+ V+ D T ++ GLC+ G +D+ R
Sbjct: 463 TTLISGLCKHGKHSKALELWFQFLNKGFVV---DTRTSNALLHGLCEAG-KLDEAFRIQK 518
Query: 111 ---------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
D V+ N + K++EA L+ M++R + P+ TY+ L+
Sbjct: 519 EILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMN 578
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ +W G DVY+Y+++I+G CK E+ EM+S+ ++ + YN
Sbjct: 579 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 638
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L A + P+S YT+ I G+ V EA +F +
Sbjct: 639 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 698
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG K+G++ + + M + + P+ +TY +MI G+ ++G +
Sbjct: 699 GLEPNVFHYTALIDGYGKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTE 757
Query: 310 ANGLLLDMEETGLEPN 325
A+ LL +M E G+ P+
Sbjct: 758 ASRLLNEMREKGIVPD 773
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 56/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVI 82
T+N+LIKG C G+ A RL K++ + N +F ++ L + +F+ + G +
Sbjct: 391 TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEM 450
Query: 83 C----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
P T +I GLCK G +++G D T N + L + GK+
Sbjct: 451 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 510
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
+EA IQ+++ +GC D SYN LI+G C + +++A
Sbjct: 511 DEA-----FRIQKEI----------------LGRGCVMDRVSYNTLISGCCGKKKLDEAF 549
Query: 189 SLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGL 230
EM+ G++ D TY+ L + N + PD + Y+ IDG
Sbjct: 550 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 609
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K E + F + + N LI C+ GRL +A ++ M++ G++P+
Sbjct: 610 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPN 668
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I G + ++A L +M GLEPN
Sbjct: 669 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 703
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 70/345 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + L F + T N+L+ GLC G++ EA R+ K++ C + +++
Sbjct: 473 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 532
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
NTL A +EMV G+ KPD T + +I GL F M++
Sbjct: 533 NTLISGCCGKKKLDEAFMFLDEMVKR-GL--KPDNYTYSILICGL----FNMNKVEEAIQ 585
Query: 107 --------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
GM PDV T +VM D K + EE + M+ ++V PNT YN L
Sbjct: 586 FWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL----- 640
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
I YC+ + A+ L +M +GI ++ TY +L
Sbjct: 641 ----------------IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 684
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + + P+ YT IDG K G +++ + + + T
Sbjct: 685 VEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 744
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+I G + G + A + + M+ G+ PD +TY I+G+ K+G
Sbjct: 745 MIGGYARDGNVTEASRLLNE-MREKGIVPDSITYKEFIYGYLKQG 788
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 60/240 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ T++ +I G C R E F ++ PN + +N L +AL L
Sbjct: 597 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 656
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMTDN 121
E+M ++ G+ P+ T T++I G+ K F M +G+ P+V + D
Sbjct: 657 REDMKHK-GI--SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 713
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K G+M + CLL M ++V+PN T Y ++I GY +D
Sbjct: 714 YGKLGQMVKVECLLREMHSKNVHPNKIT---------------------YTVMIGGYARD 752
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
NV +A L EM +GI PDS Y +I G K G VLEA K
Sbjct: 753 GNVTEASRLLNEMREKGI-----------------VPDSITYKEFIYGYLKQGGVLEAFK 795
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ VF + N + TCN L+ L + + + F ++ + G++PDV + I
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAI 256
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK G+ ++A L MEE G+ PN
Sbjct: 257 NAFCKGGKVEEAVKLFSKMEEAGVAPN 283
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 160/353 (45%), Gaps = 47/353 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +V + N+ TFN +I LC EG++ +A + VF P ++T
Sbjct: 203 LNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVT 262
Query: 61 FNTLALVALNLFEEMVNEFGVIC-------KPDVVTCTNIIDGLCKDGF-------MMDQ 106
+NTL + +L + +I +PD+ T I+ +C +G M +
Sbjct: 263 YNTL-VQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEI 321
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ PD V+ N++ S +G +E A + M+++ + P TYNTL+ G
Sbjct: 322 GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAA 381
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
KG D +YNILINGYC+ + + A +L EM+++GI+
Sbjct: 382 EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQ------------ 429
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P YT+ I L + EA ++F + + N L+DG C IG +
Sbjct: 430 -----PTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMD 484
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + M + PD VTYN ++ G C EG+ ++A L+ +M+ G++P+
Sbjct: 485 RAFSLLKE-MDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 50/285 (17%)
Query: 85 PDVVTCTNIIDGLCK------------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P TC +I+ L + D + M+ ++ +V T N+M + L K+GK+++A
Sbjct: 188 PKTETCNHILTLLSRLNRIENAWVFYADMYRME--IKSNVYTFNIMINVLCKEGKLKKAK 245
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGY 178
L +M + P TYNTL+ GF+ SKG + D+ +YN +++
Sbjct: 246 GFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWM 305
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
C N A + REM G+ D+ +YN L +N + P
Sbjct: 306 C---NEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTF 362
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ Y T I GL+ + A + I VL T N LI+G C+ G K A+ + H
Sbjct: 363 YTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFAL-HD 421
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ P TY +I+ C++ + ++A+ L + G++P+
Sbjct: 422 EMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPD 466
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
+L+ I + VT+N LI G C G +A L ++ P T+ +L V
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMR 109
A LFE++V G KPD+V ++DG C G M MD +
Sbjct: 443 CRKNKTREADELFEKVV---GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSIN 499
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------- 158
PD VT N + L +GK EEA L+ M +R + P+ +YNTL+ G++
Sbjct: 500 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMV 559
Query: 159 ---WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
S G + +YN L+ G K++ E A L REM SEGI + +++ ++ A++N
Sbjct: 560 RDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619
Query: 216 V 216
+
Sbjct: 620 L 620
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F ++ P T+N+LI GL E +I A L +++ + +T+N L
Sbjct: 346 AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILIN 405
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
A A L +EM+ + G+ +P T T++I LC+ + +G
Sbjct: 406 GYCQHGDAKKAFALHDEMMTD-GI--QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKG 462
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
M+PD+V +N + D G M+ A LL+ M +NP+ TYN LM G
Sbjct: 463 MKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAR 522
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G + D SYN LI+GY K + + A + EMLS G TYN L +
Sbjct: 523 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGL 582
Query: 214 NN 215
+
Sbjct: 583 SK 584
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F LL + M P+ VT+N L++GLC EG+ EA L ++ P+ I+
Sbjct: 480 IGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHIS 539
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL G K D + D M+ G P ++T N +
Sbjct: 540 YNTLI-------------SGYSKKGDTKHAFMVRDE------MLSLGFNPTLLTYNALLK 580
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
LSK+ + E A LL M + PN ++ ++++ +
Sbjct: 581 GLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 154/356 (43%), Gaps = 54/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VT+NS+I G GR+ + F+++ C+P+VIT+NTL L
Sbjct: 166 PDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEF 225
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F EM + G+ KP+VV+ + ++D CK+ M G+ P+ T + D
Sbjct: 226 FREM-KQSGL--KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDA 282
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G + +A L + M Q V N TY L+DG + G +
Sbjct: 283 YCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPN 342
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ SY LI+G+ K +N++ A+ L EM GI+ D Y T
Sbjct: 343 LASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMN 402
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + ++ +YTT +D +K+ E + + + +T T LIDGLCK
Sbjct: 403 EMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNK 462
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D F + + GL + Y MI G CKE Q + A L M + GL P+
Sbjct: 463 LVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPD 518
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 148/320 (46%), Gaps = 49/320 (15%)
Query: 54 CDPNVITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK----DGF- 102
C P F+ L L+ ++FEE + F + + P +C ++ + DG
Sbjct: 59 CVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMK 118
Query: 103 -----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M+ G +P V T N+M D + K+G +E A+ L E M R + P+T TYN+++DG+
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGY 178
Query: 158 A--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
S C DV +YN LIN +CK + + REM G++ +
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238
Query: 204 TTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+Y+TL M + P+ H YT+ +D K G + +A ++
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + T LIDGLC + R+K A ++F ++ G+ P++ +Y +IHGF K
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMV-TAGVIPNLASYTALIHGFVKAK 357
Query: 306 QHQKANGLLLDMEETGLEPN 325
+A LL +M+ G++P+
Sbjct: 358 NMDRALELLDEMKGRGIKPD 377
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 148/363 (40%), Gaps = 67/363 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
G+ G + S PN+V++++L+ C E + +A + + + PN T
Sbjct: 216 FGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHT 275
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KD-----G 101
+ +L A L +EM ++ GV + +VVT T +IDGLC K+ G
Sbjct: 276 YTSLVDAYCKIGNLSDAFRLADEM-SQVGV--EWNVVTYTALIDGLCDVERIKEAEELFG 332
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ G+ P++ + + K M+ A LL+ M R + P+ Y T + WS
Sbjct: 333 KMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFI-----WS 387
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
C +E A + EM +GI+A+ Y TL A S
Sbjct: 388 ----------------LCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSE 431
Query: 222 ------------------VYTTYIDGLYKNGFVLEAMKVFSAIGNH---KCVLTIETCNC 260
+ IDGL KN V +A+ F I N + I T
Sbjct: 432 GLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYT--A 489
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+IDGLCK +++ A +F + Q GL PD Y +I G K+G +A L M E
Sbjct: 490 MIDGLCKEDQVEAATTLFEQMAQK-GLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEI 548
Query: 321 GLE 323
G+E
Sbjct: 549 GVE 551
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSH 221
G +H + SY I+ + R DA + REM LS+ D ++ L+ N P
Sbjct: 5 GFKHTIESYCIVAHILFCARMYYDANRILREMVLSKAELKDCDVFDVLWSTRNVCVPGFG 64
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V+ L + EA++ FS + + +CN L+ ++G+ F
Sbjct: 65 VFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTD-GMKRFFKD 123
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G P V TYNIMI CKEG + A+GL +M+ GL P+
Sbjct: 124 MIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPD 167
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 73/246 (29%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L G+++ + PN+ ++ +LI G + A L ++ P+++ + T
Sbjct: 330 LFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLC 389
Query: 65 -------ALVALNLFEEM---VNEFGVICKPDV--------------------------V 88
A V +N +E N F D V
Sbjct: 390 GLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAV 449
Query: 89 TCTNIIDGLCKDGFMM-----------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
T +IDGLCK+ + D G++ + M D L K+ ++E A L E
Sbjct: 450 TFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQ 509
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
M Q+ + P+ Y +L+DG K NV A++L +M
Sbjct: 510 MAQKGLVPDRTAYTSLIDG---------------------KLKQGNVVQALALRDKMAEI 548
Query: 198 GIRADA 203
G+ + A
Sbjct: 549 GVESGA 554
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 56/335 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G + +L +P +VT+ +++ G C GRI +A L ++L P+ ++TL
Sbjct: 176 GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235
Query: 65 ALVALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
L + +E F + DV+ T+ I GLCK G M++ G PD
Sbjct: 236 GLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 295
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT--CTYNTLMDGFAWWSKGCRHDVYS 170
V+ NV+ +L KD ++ EA L++ ++R P CT
Sbjct: 296 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCT--------------------- 334
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+L++G CK R VE+A + ML G RA P Y+ IDGL
Sbjct: 335 --VLVDGLCKSRRVEEACVILERMLETGDRA----------------PSVVTYSAVIDGL 376
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K + +A V + CV + T +ID CK+GRL A ++F M G D
Sbjct: 377 CKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQR-MHERGCALD 435
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV YNI+I G+C+ + +A ++ +M G++PN
Sbjct: 436 VVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPN 470
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 152/382 (39%), Gaps = 96/382 (25%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------- 67
L++ F P+ T+ +LI+G C +I +A L ++ P ++TF +L
Sbjct: 44 LVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFT 103
Query: 68 --ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
AL +F +M++ + KPD T +I LCK M+ G PD VT
Sbjct: 104 DKALQIFHQMID---MKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTY 160
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI 175
V+ +L K K E+ + + E M+ + +P TY T+ +
Sbjct: 161 TVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATV---------------------V 199
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-----------------MAINNVPP 218
NGYCK ++ A+SL R + G + Y+TL MA +V
Sbjct: 200 NGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQ- 258
Query: 219 DSHVYTTYIDGLYKNG-----------------------------------FVLEAMKVF 243
D VYT++I GL K G V EA ++
Sbjct: 259 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 318
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
KC+ + C L+DGLCK R++ A I +++ P VVTY+ +I G CK
Sbjct: 319 DQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCK 378
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+ A +L M G P+
Sbjct: 379 ADRLDDAYVVLQKMRRAGCVPD 400
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 48/249 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE----M 75
+++ + S I GLC G++ EA + K+ C P+ +++N + +L N E M
Sbjct: 259 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELM 318
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR-PDVVTLNVMTDNLSK 124
C P V CT ++DGLCK M++ G R P VVT + + D L K
Sbjct: 319 DQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCK 378
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
++++A +L+ M + P+ TY ++D F +GC DV +
Sbjct: 379 ADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVA 438
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YNILI GYC+ V++A+++ EM GI+ + + +T+ +DGL
Sbjct: 439 YNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTI-----------------VDGL 481
Query: 231 YKNGFVLEA 239
K V EA
Sbjct: 482 CKESRVEEA 490
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 35/213 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P+ V++N +I LC + R+ EA L + C P V L V V E
Sbjct: 292 APDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVL--VDGLCKSRRVEEA 349
Query: 80 GVICK---------PDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTD 120
VI + P VVT + +IDGLCK D +++ Q MR PDVVT + D
Sbjct: 350 CVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIID 409
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K G+++EA L + M +R + YN L+ G+ +K G +
Sbjct: 410 AFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQP 469
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+V S + +++G CK+ VE+A L +M E +
Sbjct: 470 NVVSLSTIVDGLCKESRVEEARLLMEKMNFESL 502
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +V+L ++ + P++VT+ ++I C GR+ EA LF++++ C +V+ +N
Sbjct: 381 RLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYN 440
Query: 63 TL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
L A V A+ + EEM G +P+VV+ + I+DGLCK+
Sbjct: 441 ILIRGYCRAAKVDEAIAMIEEMA---GRGIQPNVVSLSTIVDGLCKES 485
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 59/358 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ P +N++I G + GR +A +L ++L C P+V++F
Sbjct: 32 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 91
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N++ AL+LFE M + +P+ T IID LC G
Sbjct: 92 NSILTCLGKKRKVDEALSLFEVMKKD----AEPNSSTYNIIIDMLCLGGRVEEAYRILDE 147
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + P+++T+N+M D L K K+EEA + E QR NP+ TY +L+DG K
Sbjct: 148 MEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG--KK 205
Query: 163 GCRHDVYS----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + Y Y LI + ED + +E++ G + D T
Sbjct: 206 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 265
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N TY+D ++K G V + +F I ++ + + + + LI GL
Sbjct: 266 N-----------------TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLT 308
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
K G+ + +IFH + Q G D YN ++ GFCK G+ KA +L +M+E ++P
Sbjct: 309 KAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQP 365
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++L + N V + SLI+ GR + ++FK+L C P++
Sbjct: 206 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLL 265
Query: 62 NTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
NT E E + +G + PDV + + +I GL K G M
Sbjct: 266 NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAGQARETSNIFHAM 323
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
QG D N + D K GK+ +A +LE M ++ V P TY ++DG A
Sbjct: 324 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 383
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG +V Y+ LI+G+ K +++A + EM+ +G+ + T+N+L
Sbjct: 384 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 443
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+D L K + EA+ F ++ KC T + LI+GLC++
Sbjct: 444 -----------------LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 486
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+VVTY MI G K G A L + G P+
Sbjct: 487 KYNKAF-VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 33/234 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
QG++PD V+ M L K G++ EA L M P YNT++ G+
Sbjct: 12 QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFED 71
Query: 159 -------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+GC V S+N ++ K R V++A+SL E ++ DA
Sbjct: 72 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLF-----EVMKKDA-------- 118
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P+S Y ID L G V EA ++ + + + T N ++D LCK +L
Sbjct: 119 -----EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKL 173
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ IF Q G PD VTY +I G K+GQ +A L M + G N
Sbjct: 174 EEAYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNAN 226
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLF 72
N+V ++SLI G GRI EA + +++ PNV T+N+L ALV AL F
Sbjct: 401 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 460
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNL 122
+ M + C P+ T + +I+GLC+ F M QG+ P+VVT M L
Sbjct: 461 QSMKE---MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 517
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+K G + +A L E P+ ++N L++G +
Sbjct: 518 AKVGNITDAYSLFERFKANGGIPDAASFNALIEGMS 553
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 159/359 (44%), Gaps = 65/359 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVITFNTL- 64
GF LG ++ F +TF L+KGLC + R +A + +++ C P+V + L
Sbjct: 106 GFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILL 165
Query: 65 --------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQ 106
+ AL L M + G PDVV+ T +I+G K+G M+D+
Sbjct: 166 KGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDR 225
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
+ PDVVT + + L K M++A +L M++ V PN TY ++M
Sbjct: 226 RISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIM------------ 273
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA-----TTYNTL------------ 209
+GYC ++A+ +++ S+G+ D TY TL
Sbjct: 274 ---------HGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVG 324
Query: 210 ------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M N + PD +VY I K G V EAM VFS + T +I
Sbjct: 325 MHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIG 384
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
LCK GR++ A F ++ + GL+P + YN +IHG C + ++A L+L+M + G+
Sbjct: 385 ILCKSGRVEDAMLYFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 442
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 165/371 (44%), Gaps = 55/371 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL ++ + P+ +N LI +G++ EA +F K+ +P+ +T+
Sbjct: 320 GALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTY 379
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + A+ FE+M++E P + ++I GLC
Sbjct: 380 GAVIGILCKSGRVEDAMLYFEQMIDEG---LSPGNIVYNSLIHGLCTCNKWERAEELILE 436
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D+G+ + + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 437 MLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 496
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + + +Y LINGYCK + DA+ L +EM S G+ D TYN
Sbjct: 497 MDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNI 556
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + + + Y + GL KN +A+++F +
Sbjct: 557 ILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMD 616
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L T N +ID L K+GR A D+F N GL P+ TY +M +G ++
Sbjct: 617 LKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEEL 675
Query: 311 NGLLLDMEETG 321
+ L L ME+ G
Sbjct: 676 DQLFLSMEDNG 686
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 154/341 (45%), Gaps = 59/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPN-----VITFNTL--------ALV 67
PN T+ S++ G C+ G+ EA KK+ +P+ + T+ TL ALV
Sbjct: 264 PNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALV 323
Query: 68 ALNLFEEMVNEFGVICKPD-----VVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLNV 117
++ +++ G+ PD ++ C G + M QG+ PD VT
Sbjct: 324 GMHALLDLMVRNGI--HPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGA 381
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---WSKG----------- 163
+ L K G++E+A E MI ++P YN+L+ G W +
Sbjct: 382 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 441
Query: 164 -CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
C + ++ +N +I+ +CK+ V ++ L M+ G++ D TY+TL
Sbjct: 442 ICLNTIF-FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTL------------- 487
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDG G + EAMK+ S + + T LI+G CKI R+ A +F M
Sbjct: 488 ----IDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKE-M 542
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
++ G++PD++TYNI++ G + + A L + + E+G +
Sbjct: 543 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 583
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V++Y ILI C+ ++ + ++ +G R +A T+ L +
Sbjct: 87 VHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPL-----------------L 129
Query: 228 DGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM--QN 284
GL + +AM V + C+ + +C L+ GLC R + A ++ HM+ +
Sbjct: 130 KGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRG 189
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVV+Y +I+GF KEG KA +M + + P+
Sbjct: 190 GGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPD 230
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R VL + S +P+++T+N +++GL R A L+ ++ + T
Sbjct: 529 ISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELST 588
Query: 61 FNTL--ALVALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDG----------FMM 104
+N + L L ++ + F +C K + T +ID L K G
Sbjct: 589 YNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFS 648
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G+ P+ T +M +N+ G +EE + L M N CT ++ M F
Sbjct: 649 SNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM-----EDNGCTVDSGMLNF 696
>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 146/331 (44%), Gaps = 71/331 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+PN+ FNS I LCT+G +L+AA++ F++M E
Sbjct: 319 LSPNIFVFNSFISKLCTDGNMLKAAKV--------------------------FQDMC-E 351
Query: 79 FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
G+I PD + T ++ G CK G M+ +G+RP V T ++ D+ K G M
Sbjct: 352 MGLI--PDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNM 409
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNIL 174
E A L + MI + P+ +YNTLM+G+ S G D+ +YNIL
Sbjct: 410 EMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNIL 469
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+G K V +A + E+ G D T +T I G G
Sbjct: 470 IHGLIKRGLVNEAKDILDELTRRGFSPDVVT-----------------FTNIIGGFSNKG 512
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
EA +F + H + TC+ L++G C+ + A +FH ++ + GL DV+ Y
Sbjct: 513 NFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKML-DAGLKADVILY 571
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +IHGFC G A L+ M E G+ PN
Sbjct: 572 NSLIHGFCSLGNIDDACHLVSMMIEHGIMPN 602
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 30/248 (12%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--- 163
G++PDVV ++ D+L K ++EA +L M Q V ++ + ++++DG+ K
Sbjct: 251 GIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEA 310
Query: 164 --------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+++ +N I+ C D N+ A + ++M G+ D +Y T+
Sbjct: 311 MDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCK 370
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M + P YT ID K G + A +F + V + +
Sbjct: 371 VKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVS 430
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N L++G K G L+ A+++ M M++ G++PD+VTYNI+IHG K G +A +L ++
Sbjct: 431 YNTLMNGYGKKGHLQKAFELLSM-MRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDEL 489
Query: 318 EETGLEPN 325
G P+
Sbjct: 490 TRRGFSPD 497
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 36/241 (14%)
Query: 5 SGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL 64
S LG++L P++ T+ LI C G + A LF+++ P+V+++NTL
Sbjct: 375 SNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTL 434
Query: 65 A---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
A L M+ GV PD+VT +I GL K G +
Sbjct: 435 MNGYGKKGHLQKAFELLS-MMRSAGV--SPDLVTYNILIHGLIKRGLVNEAKDILDELTR 491
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G PDVVT + S G EEA L M + + P+ T + L++G+
Sbjct: 492 RGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAE 551
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G + DV YN LI+G+C N++DA L M+ GI + T++ L +
Sbjct: 552 ANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVL 611
Query: 212 A 212
Sbjct: 612 G 612
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + + +P++VT+N LI GL G + EA + +L P+V+TF
Sbjct: 442 GHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTF 501
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD----------GFMMD 105
+ FEE F + + PDVVTC+ +++G C+ M+D
Sbjct: 502 TNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCMAEANVLFHKMLD 561
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G++ DV+ N + G +++A L+ +MI+ + PN T++ L+ G+
Sbjct: 562 AGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHALVLGY 613
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
S+G + ++ I+GYC N++ L EM GI+ PD
Sbjct: 214 SQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIK-----------------PDV 256
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT ID L K + EA + + L + + ++DG CK+G+ + A D+ +
Sbjct: 257 VAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEV 316
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+P++ +N I C +G KA + DM E GL P+
Sbjct: 317 F----NLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPD 357
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Query: 157 FAWWSK---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
F WS+ G +H V S +I+ A+ L ++S + ++ +F+ I
Sbjct: 83 FFRWSEYCMGSKHTVESVCTMIHILVSGNMNHKAMDLLLHLIS--YNSGEEGWHNIFLKI 140
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLE-----AMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ V T + G+ N +V E A+K+ + + I CN L+ L +
Sbjct: 141 HETHTKRRVLET-VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLES 199
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L +AWD F M++ GL + ++ I G+C +G LL++M+ G++P+
Sbjct: 200 EQLNLAWD-FLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPD 255
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 57/356 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
N+ TFN+L+ LC EG++ EA L+ ++ PNV+++N + L A ++
Sbjct: 248 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 307
Query: 73 EEMV-NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM+ N F P+ VT T ++DG K G M D + P TL ++
Sbjct: 308 KEMLDNGF----TPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKG 363
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K G+ E L + + P YNT++DGF G
Sbjct: 364 LCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPS 423
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y LI+G+CK N++ A+ L +M +G++ D Y TL
Sbjct: 424 TVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLN 483
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ + P+ +Y + I G V EA+ ++ + N ++T LIDGL K G
Sbjct: 484 ELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSG 543
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RL A DI H M + G+ PD + ++I+G C +GQ + A +L DM + P+
Sbjct: 544 RLLYASDI-HTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPS 598
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 167/365 (45%), Gaps = 51/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L ++ +PN+V++N++I G C + I A +++K++ PN +TF T+ +
Sbjct: 271 LWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTF-TILMDGY 329
Query: 70 NLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
++ N F + + P T II GLCK G + QG P
Sbjct: 330 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTC 389
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------- 161
+ N + D K+G + A+ + M + + P+T TY +L+DGF +
Sbjct: 390 MPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLND 449
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINN 215
KG + D+ +Y LI+G+CK R+++ A L E+ G+ + YN++ F +NN
Sbjct: 450 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNN 509
Query: 216 V---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
V P D YT+ IDGL K+G +L A + + + + +
Sbjct: 510 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 569
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI+GLC G+ + A I M + P V+ YN +I G KEG Q+A L +M +
Sbjct: 570 LINGLCNKGQFENARKILED-MNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDR 628
Query: 321 GLEPN 325
GL P+
Sbjct: 629 GLVPD 633
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 133/350 (38%), Gaps = 90/350 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + R+ + P T +IKGLC GR E LF K P + +
Sbjct: 333 GDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPY 392
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ +A N++ EM E G+ P VT T++IDG CK
Sbjct: 393 NTIIDGFIKEGNINLASNVYREMC-EVGIT--PSTVTYTSLIDGFCKGNNIDLALKLLND 449
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G++ D+ + D K M+ A+ LL + ++PN YN+++ GF
Sbjct: 450 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNN 509
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D+ +Y LI+G K + A + EMLS+GI D +
Sbjct: 510 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 569
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N+ P +Y T I G +K G + EA ++
Sbjct: 570 LINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL-------- 621
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
H M + GL PD +TY+I+++G
Sbjct: 622 ----------------------------HDEMLDRGLVPDNITYDILVNG 643
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 141/330 (42%), Gaps = 52/330 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L ++L+ T + T + +++ EG ILEA + F + + L A
Sbjct: 27 LHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHFLQAKARGVE--------LDQEAY 78
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
++F ++ KP+ +++ + G++ +G V+T V K+G +
Sbjct: 79 SIFVHLL-----CLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACV------KEGNVA 127
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILI 175
EA L + M+ + N +LM G+ G + +Y++LI
Sbjct: 128 EALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLI 187
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+G CK+ N+E A EM ++GIR+ + N++ + +T + D L
Sbjct: 188 DGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALE---- 243
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
S + N + T N L+ LCK G++ A +++ ++ G++P+VV+YN
Sbjct: 244 --------SGLAN------VFTFNTLLSWLCKEGKMNEACNLWDEVIA-KGISPNVVSYN 288
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G C++ A + +M + G PN
Sbjct: 289 NIILGHCRKDNINAACKVYKEMLDNGFTPN 318
>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 153/323 (47%), Gaps = 54/323 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+ TFN LI GLC EG + +A L K++ P ++T+NTL LN +
Sbjct: 231 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTL----LNWY-------- 278
Query: 81 VICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
CK +ID +M+ +G+ DV T NV DNL + + +A LL+ M
Sbjct: 279 --CKKGRYKAAIELID------YMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMR 330
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK-GCRHDVY-------------SYNILINGYCKDRNVE 185
+ ++PN TYNTL++GF K G V+ +YN LI G+C + E
Sbjct: 331 KEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFE 390
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A+ L M + G+R + TY TL M +N++ YT I
Sbjct: 391 EALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 450
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL KNG + EA+++ + + T + LI+G C++G +K A +I M GL
Sbjct: 451 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII-CRMYRSGL 509
Query: 288 TPDVVTYNIMIHGFCKEGQHQKA 310
+ + Y+ +I+ FC+ G +A
Sbjct: 510 VLNKIIYSTLIYNFCQHGNVTEA 532
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 150/338 (44%), Gaps = 53/338 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R++ ++LL ++ +PN VT+N+LI G EG+I AA++F +++ F PN +T+N
Sbjct: 318 RSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYN 377
Query: 63 TLALVALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
L G C D ++D M G+R + VT + +
Sbjct: 378 AL--------------IGGHCHVGDFEEALRLLD------HMEAAGLRLNEVTYGTLLNG 417
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K K E A LLE M D+ Y L+DG + G D
Sbjct: 418 LCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPD 477
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y+ LING+C+ N++ A + M G + +N + +Y+T I
Sbjct: 478 VITYSSLINGFCRVGNIKSAKEIICRMYRSG------------LVLNKI-----IYSTLI 520
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
++G V EAMKV++ + + TCN L+ LC+ G+L A + F M GL
Sbjct: 521 YNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEA-EKFLCHMSRIGL 579
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ +TY+ +I+G+ G A DM + G P+
Sbjct: 580 VPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPS 617
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 145/357 (40%), Gaps = 91/357 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+ SL+KGLC G ++EA + +L+ + + +NTL A+ L
Sbjct: 616 PSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVAL 675
Query: 72 FEEMVNE----------------------------FGVICK-----PDVVTCTNIIDGLC 98
F++MV FG P+ V T ++DGL
Sbjct: 676 FDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLS 735
Query: 99 KDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G MM +G PD V N + D+ S+ G+M +AN M V PN
Sbjct: 736 KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 795
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
TYN L+ GF+ K + + +SL M+ EGI D T+++
Sbjct: 796 TYNILLHGFS---------------------KKQALLRYLSLYSTMMREGIFPDKLTFHS 834
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + GL K+G +K+ + + T N LI+ +
Sbjct: 835 LIL-----------------GLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSES 877
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+++ A+D+ + M G+ PD TYN + +G K+ +++ +L +M E G+ P
Sbjct: 878 GKMRKAFDLVN-FMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPK 933
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 144/357 (40%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F ++ P+ V FN++I G++++A F + + PN+ T+
Sbjct: 738 GHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATY 797
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L L L+L+ M+ E G+ PD +T ++I GL K G
Sbjct: 798 NILLHGFSKKQALLRYLSLYSTMMRE-GIF--PDKLTFHSLILGLSKSGIPDLGVKLLGK 854
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G D T N++ + S+ GKM +A L+ M V P+ TYN + +G S
Sbjct: 855 MIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSA 914
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G Y LING C+ +++ A L EM + G + +
Sbjct: 915 FRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESA 974
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ + GL G +AM V + + + TI T L+ C+
Sbjct: 975 M-----------------VRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRD 1017
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A + +M+ GL DVV YN++I G C G A L +M L PN
Sbjct: 1018 AKIAEALKL-KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1073
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 101/244 (41%), Gaps = 33/244 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P V T N++ ++ KD + E L M + + PN T+N L++G
Sbjct: 193 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 252
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
G + +YN L+N YCK + A+ L M+ +GI AD TYN
Sbjct: 253 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 312
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + P+ Y T I+G K G + A +VF+ +
Sbjct: 313 LCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPN 372
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N LI G C +G + A + M+ GL + VTY +++G CK + + A LL
Sbjct: 373 CVTYNALIGGHCHVGDFEEALRLLDH-MEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLL 431
Query: 315 LDME 318
M
Sbjct: 432 ERMR 435
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSH 221
+H + Y + + K R + A S+ R + GI + + L + N++P
Sbjct: 109 KHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGI-GSKSIFGALMDTYPLCNSIPS--- 164
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V+ I K G + A++ F +G ++ TCN ++ + K R ++ W +F
Sbjct: 165 VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE- 223
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M + G+ P+V T+NI+I+G C EG +KA LL MEE G P
Sbjct: 224 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVP 266
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G LLG+++M + TFN LI G++ +A L +N P+ T+N +
Sbjct: 848 GVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFN 907
Query: 65 ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
L + F E + E GVI P +I+G+C+ G M G
Sbjct: 908 GLNKKSAFRESTVVLHEMLENGVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 965
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
V + M L GK E+A +L+ M++ + P T+ TLM F +K
Sbjct: 966 GSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALK 1025
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
G + DV +YN+LI G C + + A L EM + + TTY L AI+
Sbjct: 1026 LKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAIS 1085
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L R L EG+ D + + P + + + K+ +F + +
Sbjct: 169 LIRVYLKEGM-IDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDK 227
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N LI+GLC G LK A ++ + +N G P +VTYN +++ +CK+G+++
Sbjct: 228 GICPNVGTFNILINGLCVEGNLKKAGNLLKQMEEN-GFVPTIVTYNTLLNWYCKKGRYKA 286
Query: 310 ANGLLLDMEETGLEPN 325
A L+ M G+E +
Sbjct: 287 AIELIDYMICKGIEAD 302
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 61/323 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ +N ++ GLC E ++ EA LF+K+ +PNV+T+NTL A L
Sbjct: 42 PDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYEL 101
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------DQGMR----PDVVTLNVMTDN 121
F+EM + V P V+ +IDG CK ++ D+ +R P+VVT + D
Sbjct: 102 FKEMAGKGYV---PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDG 158
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
LSK GK++ A +L+ M+++ V PN TY+ L+D G+CK
Sbjct: 159 LSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLID---------------------GFCKV 197
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
R V++A L +M+++GI TYN L ++ L + + +A K
Sbjct: 198 RRVDEAHKLLEQMVTQGIAPTVVTYNIL-----------------LNSLCRADKLEDAFK 240
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F + +C T+ T N L+ LC +L A ++ ++ G PD +TY+ + G
Sbjct: 241 LFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK-GCPPDAITYDTLAWGL 299
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
+ G+ +A L+ M+ T P
Sbjct: 300 TRAGKVHEAQELMEKMKLTKRNP 322
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 125/265 (47%), Gaps = 42/265 (15%)
Query: 85 PDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD +T I++ LCK D M +G++PD N + L ++ K+EEA L
Sbjct: 7 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF--AWW------------SKGCRHDVYSYNILINGYCK 180
E M+++ +NPN TYNTL++G AW KG SYN LI+G+CK
Sbjct: 67 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+++ A + +M+ +N P+ YTT IDGL K+G V A
Sbjct: 127 KKDLVAAKDVFDKMVR-----------------SNCVPNVVTYTTLIDGLSKSGKVQAAA 169
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+V + + T +CLIDG CK+ R+ A + ++ G+ P VVTYNI+++
Sbjct: 170 EVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ-GIAPTVVTYNILLNS 228
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C+ + + A L M + P
Sbjct: 229 LCRADKLEDAFKLFRGMAQRRCHPT 253
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 36/234 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--- 65
+L +++ PN+VT+N+LI GLC RI A LFK++ P +++NTL
Sbjct: 65 LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 124
Query: 66 ------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
+ A ++F++MV C P+VVT T +IDGL K G M+ +G+
Sbjct: 125 CKKKDLVAAKDVFDKMVRSN---CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVT 181
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAW 159
P+V T + + D K +++EA+ LLE M+ + + P TYN L+ D F
Sbjct: 182 PNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 241
Query: 160 W----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + C V +YN L+ C + ++ A L EM+++G DA TY+TL
Sbjct: 242 FRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 295
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L ++ TPN+ T++ LI G C R+ EA +L +++ P V+T+
Sbjct: 163 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 222
Query: 62 NTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCK----DGF------MM 104
N L L +L +++ + F + C P VVT ++ LC DG M+
Sbjct: 223 NIL-LNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMI 281
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
+G PD +T + + L++ GK+ EA L+E M NP
Sbjct: 282 AKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 322
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 161/344 (46%), Gaps = 55/344 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD-PNVITFNTLAL----- 66
R+L S P++VT+NSLI GLC R+ +A + ++L + P+V+T+NT
Sbjct: 105 RMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKA 164
Query: 67 ----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDV 112
L + EEM + G+ PDVVT +II GLCK D F M+++G PD
Sbjct: 165 GKLDKGLEMLEEM-DRGGI--SPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDS 221
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWS--- 161
+T ++M DNLS+ +++ +LE M++ + TY L+ A W+
Sbjct: 222 LTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQ 281
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
GC +VY++N I C+ A ++ M+ G + +YN +
Sbjct: 282 AMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFV--------- 332
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDI 277
IDGL K+G V +A K+ + + C + N LI G CK GRL A +
Sbjct: 333 --------IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQL 384
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ PDVVTYN MI G K G ++A LL +M+ G
Sbjct: 385 LKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 49/349 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLF 72
+ ++VT+ +LI GLC G + A L +K+ C PNV+T+ L A +
Sbjct: 41 YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAI 100
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----------DGFMMDQGMRPDVVTLNVMTDN 121
+ + C+PD+VT ++I GLC M++ G PDVVT N
Sbjct: 101 QTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISG 160
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K GK+++ +LE M + ++P+ T+ +++ G +GC D
Sbjct: 161 LCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPDS---- 220
+Y+I+++ + ++ + M+ G A + TY L A+ ++ S
Sbjct: 221 SLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYE 280
Query: 221 ---------HVYT--TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
VYT +I L ++G A + + + + + N +IDGLCK G
Sbjct: 281 QAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSG 340
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ AW + ++ + PDV+ +N +I GFCK G+ +A LL +M+
Sbjct: 341 NVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMK 389
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 55/341 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F + +N+LI GLC + A L + D +V+T+ TL A
Sbjct: 6 FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
L ++M + C P+VVT T +IDGLCK D M+ G PD+VT N +
Sbjct: 66 ALLQKMADAG---CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLI 122
Query: 120 DNLSKDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L +M++A +L E+MI+ P+ TYNT + G K G
Sbjct: 123 HGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI 182
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV ++ +I+G CK ++DA + + ML G D+ TY+ + ++N+ + + T
Sbjct: 183 SPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIM---LDNLSRANRLDT 239
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
V E ++ G++ T LI L + G ++ A + M+
Sbjct: 240 -----------VEEVLEHMVKSGHYALSATYAP---LIHALIRAGDIESASWAYEQAME- 284
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +V T+N I C+ G+ A +LL M E+G PN
Sbjct: 285 AGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPN 325
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
S+ R D YN LI G CK R A+ L M + G A TY TL
Sbjct: 3 SRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLD 62
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
MA P+ YT IDGL K +A++ + C + T N LI
Sbjct: 63 AAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLI 122
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC R+ A + LM G PDVVTYN I G CK G+ K +L +M+ G+
Sbjct: 123 HGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI 182
Query: 323 EPN 325
P+
Sbjct: 183 SPD 185
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 123/291 (42%), Gaps = 56/291 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +L + +P++VTF S+I GLC RI +A ++FK + C P+ +T+
Sbjct: 165 GKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTY 224
Query: 62 NTLA--LVALNLFE--EMVNEFGVICKPDVVTCT--NIIDGLCKDGFM----------MD 105
+ + L N + E V E V ++ T +I L + G + M+
Sbjct: 225 SIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAME 284
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G +V T N L + GK A +L MI+ PN
Sbjct: 285 AGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPN------------------- 325
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEG-IRADATTYNTLFMAINNVPPDSHVYT 224
+ SYN +I+G CK NV+DA L R+ML G + D +NTL
Sbjct: 326 --LLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTL--------------- 368
Query: 225 TYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIA 274
I G K G + +A ++ + + CV + T N +IDG K G LK A
Sbjct: 369 --ISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQA 417
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 211 MAINNVPPDSHVYTTYIDGL---YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
MA + D+ +Y T I GL K LE + V +A G V+T T LIDGLCK
Sbjct: 1 MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTT---LIDGLCK 57
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L A + M + G P+VVTY +I G CK + A + M +G EP+
Sbjct: 58 SGDLDAAQALLQK-MADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 55/373 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G++ +L ++ P+ V + +LI G G + A + F ++ P+ IT
Sbjct: 341 IGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT 400
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+ TL + NLF EM++ G+ KPD VT T +ID CK G M++
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISR-GL--KPDEVTYTTLIDVYCKAGEMVNAFSLHN 457
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
GM P++VT + D L K G+++ AN LL+ M ++ + N C YN++++G
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G D +Y +I+ YC+ +++ A L +EML G++ T+N
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +M + PD+ Y T + + K++ + N
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T N LI G CK LK AW ++ +++ G P V +YN +I F K+ + +
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-GYVPTVTSYNALIKRFYKKRKFXE 696
Query: 310 ANGLLLDMEETGL 322
A L +M GL
Sbjct: 697 ARELFEEMRGHGL 709
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 162/391 (41%), Gaps = 87/391 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G L+ + + PN T+NS+I LC G+ EA ++ +++ P+ +
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL A F+EM+++ PD +T T +I G + G
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSK---KISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ +G++PD VT + D K G+M A L M+Q + PN TY L+DG
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + +V YN ++NG CK N+E A+ L +EM GI DA TY
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY- 541
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TT ID + G + +A K+ + + T+ T N L++G C
Sbjct: 542 ----------------TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585
Query: 268 IGRLK-----IAWDI-----------------------------FHMLMQNPGLTPDVVT 293
+G L+ + W + + M+N G+ PD T
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YNI+I G CK ++A L +M E G P
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVP 676
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ TP++V+++++I G C G + +A +L + + PN T
Sbjct: 271 LGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYT 330
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N++ L+ A + EM+++ + PD V T +I G K G
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKII---PDNVVYTTLIHGFFKLGHVRTANKWFD 387
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------ 155
M+ + + PD +T + + GK+ E L MI R + P+ TY TL+D
Sbjct: 388 EMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG 447
Query: 156 ----GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F+ ++ G ++ +Y LI+G CK ++ A L EM +G++ + YN
Sbjct: 448 EMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYN 507
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ ++G+ K G + +A+K+ + T +ID C+
Sbjct: 508 SM-----------------VNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550
Query: 268 IGRLKIAWDIFHMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+G + D H L+Q + GL P VVT+N++++GFC G + + LL M E G+ P
Sbjct: 551 LGDI----DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606
Query: 325 N 325
+
Sbjct: 607 D 607
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 141/337 (41%), Gaps = 54/337 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN + F+ + L G + EA +L KL + V + N N E +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIK 247
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
V C + G+ + + N++ +L + GK++EA+ LL M
Sbjct: 248 VFC---------------------EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDF 286
Query: 141 RDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVED 186
R P+ +Y+T++DG+ KG + + Y+YN +I CK +
Sbjct: 287 RSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFE 346
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A + REM+S+ I D Y TL M + PD YTT I
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + G V+E +F + + T LID CK G + A+ + H M G+T
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL-HNEMVQMGMT 465
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++VTY +I G CK G+ AN LL +M + GL+ N
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 36/219 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N+ +NS++ G+C G I +A +L K++ V DP+ IT+ T+ A L
Sbjct: 502 NVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLL 561
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLC-----KDG-----FMMDQGMRPDVVTLNVMTDNL 122
+EM++ G+ +P VVT +++G C +DG +M+++G+ PD +T N +
Sbjct: 562 QEMLDR-GL--QPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW------SKGCRHDV 168
M + + M + V P++ TYN L+ G AW+ KG V
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTV 678
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SYN LI + K R +A L EM G+ AD YN
Sbjct: 679 TSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYN 717
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 177/367 (48%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L R+ + P++ T+NSL+ G C +G + EA +L+ ++ + PNV+T+ TL +
Sbjct: 423 LFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYI 482
Query: 68 ALNLFEEMVNEFGVI--CKPDVVTCTN-----IIDGLCK-------DGFM---MDQGMRP 110
A F+ N + ++ K + V+C + +I+G+C DG + M +G P
Sbjct: 483 AKKDFD---NAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIP 539
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----------- 159
++T N + + K G M A + + M ++ + PN TY + +DG+
Sbjct: 540 TMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKML 599
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN- 215
+G + D+ +YN LING+C++ N+ A+ L +L +G+ + YN+L N
Sbjct: 600 NDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNL 659
Query: 216 -----------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ D+ YTT IDG K+G V A++++S + + T
Sbjct: 660 NMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTF 719
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
L GLC+ G + A + M+ + P+V YN++I+G+ ++ + Q+A L +M
Sbjct: 720 TALTHGLCRSGDIDGAKKLLEE-MRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEML 778
Query: 319 ETGLEPN 325
G++P+
Sbjct: 779 NMGIQPD 785
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 54/325 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT--- 63
+ LL + + + N T+N LI G+C R+ E + K P ++T+N+
Sbjct: 490 AYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIIN 549
Query: 64 ------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+ A ++++M E G+ P+++T T+ IDG C+ G + +G
Sbjct: 550 GFVKAGMMGSAFTVYQQM-REKGL--PPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRG 606
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
++PD+V N + + ++G M A LL ++++ + PNT YN+L+ G+
Sbjct: 607 LQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVS 666
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ G D +Y LI+G+ KD NV A+ L EM+++G
Sbjct: 667 KFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKG--------------- 711
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD+ +T GL ++G + A K+ + + N LI+G + +L+
Sbjct: 712 --YIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQE 769
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ + H M N G+ PD TY+I++
Sbjct: 770 AFRL-HDEMLNMGIQPDDTTYDILV 793
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 147/357 (41%), Gaps = 60/357 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+++ +L++G C + A LFK+ P + + L A L
Sbjct: 296 DVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELC 355
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+M + G++ P + ++ GL D M D G+ PDV T N +
Sbjct: 356 RQMTGQ-GLL--PSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWH 411
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC----------------RH 166
+ K+ EA L + M + V P+ TYN+L+ G+ KGC +
Sbjct: 412 CQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYC--KKGCMDEAVKLYSEMPMEGFKP 469
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+V +Y L+ GY ++ ++A +L EM G+ + TYN L I
Sbjct: 470 NVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGML 529
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P Y + I+G K G + A V+ + I T IDG C+
Sbjct: 530 KSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRT 589
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +A + + + + GL PD+V YN +I+GFC+EG A LL+ + + GL PN
Sbjct: 590 GCSDMALKMLNDVRRR-GLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPN 645
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 104/259 (40%), Gaps = 72/259 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVT-----------------------------------F 26
G F + ++ PN++T +
Sbjct: 555 GMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAY 614
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICK 84
N+LI G C EG + A +L L PN + +N+L LN+ +E+ + + K
Sbjct: 615 NALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIK 674
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
D T T +IDG KDG MM +G PD T +T L + G ++
Sbjct: 675 GGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDG 734
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LLE M + DV PN V+ YN+LINGY +D +++A L
Sbjct: 735 AKKLLEEMRRLDVRPN---------------------VFIYNMLINGYLRDCKLQEAFRL 773
Query: 191 CREMLSEGIRADATTYNTL 209
EML+ GI+ D TTY+ L
Sbjct: 774 HDEMLNMGIQPDDTTYDIL 792
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 61/337 (18%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEM 75
T+ +++ L GR+ EA R+ ++ +VI TL ALNLF+E
Sbjct: 264 TYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKET 323
Query: 76 VNE--------FGVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
+ + +GV+ + D V T LC+ M QG+ P L+++ L D
Sbjct: 324 LKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQ--MTGQGLLPSTFELSLVLKGLLNDR 381
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ ++A CL E M + DV++YN LI+ +C+ + +
Sbjct: 382 RWKDAVCLFEEMADSGL----------------------PDVFTYNNLIHWHCQAHKLRE 419
Query: 187 AVSLCREMLSEGIRADATTYNTLFMA------------------INNVPPDSHVYTTYID 228
A++L M G++ TYN+L M + P+ Y T +
Sbjct: 420 ALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMR 479
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G A + + + T N LI+G+C + R+ + M G
Sbjct: 480 GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSE-GFI 538
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P ++TYN +I+GF K G A + M E GL PN
Sbjct: 539 PTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPN 575
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 130/339 (38%), Gaps = 82/339 (24%)
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNII----------DGLCKDGFMMDQGMRPDVV 113
L A + + MV GV+ PD+ + T+++ D L M +G R D
Sbjct: 137 LPSAATDTYAHMVAR-GVV--PDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAW 193
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP---------------------------- 145
+ + K+G E+A L + M +++P
Sbjct: 194 MFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREM 253
Query: 146 -----NTC--TYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNV 184
+TC TY T++D + G + DV L+ GYC + V
Sbjct: 254 KEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEV 313
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVP------------------PDSHVYTTY 226
+A++L +E L +GI Y L + V P + +
Sbjct: 314 GNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLV 373
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ GL + +A+ +F + + + + T N LI C+ +L+ A ++F M+ G
Sbjct: 374 LKGLLNDRRWKDAVCLFEEMADSG-LPDVFTYNNLIHWHCQAHKLREALNLFDR-MKKAG 431
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P + TYN ++ G+CK+G +A L +M G +PN
Sbjct: 432 VKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPN 470
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 155/349 (44%), Gaps = 51/349 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+ G++ F P+ + +N++I GL G EA ++ + C P +T+ L +L
Sbjct: 247 VFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLC 306
Query: 68 ALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVV 113
E F V+ +P+ V T++I G K G M ++ G RPDV+
Sbjct: 307 KAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVI 366
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T VM D L K G E+A E M++ PN TY T++ G + +
Sbjct: 367 THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM 426
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
GC D +Y L++G+CK +++A L E+ D + + P+
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL-------DKCSSS----------PN 469
Query: 220 SHVYTTYIDGLYKNGFVLEAM-KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+Y++ + GL G V + +F L C +I GLCK GRL A IF
Sbjct: 470 LQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIF 529
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFC--KEGQHQKANGLLLDMEETGLEPN 325
M + G PD TYNI+I+G C +E + ++A LL D+E G P+
Sbjct: 530 QR-MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPD 577
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 152/356 (42%), Gaps = 50/356 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F ++ T+N L+ L E + + +++ PN +FN L + ++ V
Sbjct: 115 FQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAV 174
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDN 121
F ++ CKPD+ T ++D LCK G MM G + PD M
Sbjct: 175 TCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRT 234
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K +++EA + M + P+ YNT++DG A +K C
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y IL+N CK +E A L R M + G R ++ Y +L
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M PD +T IDGL K+G +A K F + C + T +I GL KIG
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A+ I ++ + G PD VTY ++ GFCK G+ +A LL ++++ PN
Sbjct: 415 RVANAFRIMKGMIAH-GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 52/359 (14%)
Query: 1 MGRASGGF-VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
+GR + F ++ G I CF P+ VT+ L+ G C GR+ EAA+L +L+ PN+
Sbjct: 413 IGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQ 471
Query: 60 TFNTLAL------VALNLFEEMVNEFGVICKP-DVVTCTNIIDGLCKDGF---------- 102
+++L N +++ + + D C +II GLCK G
Sbjct: 472 LYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQR 531
Query: 103 MMDQGMRPDVVTLNVMTDNL--SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+ +G +PD T N++ + L S++ ++E A LL + P+ TY L G
Sbjct: 532 MVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKI 591
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+G DV +Y L G C V+ AVSL +EM+ +G
Sbjct: 592 GEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG-------- 643
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PD+ Y I+GL K + +A K F + T+ T L+ LC
Sbjct: 644 ---------GAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALC 694
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A+ F ++ L V+ Y+ +IHGFCK + A L DM G P
Sbjct: 695 HAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPT 753
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 114/252 (45%), Gaps = 34/252 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
G + DV T N + + L + + + E M++ + PNT ++N L+ FA
Sbjct: 114 GFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDA 173
Query: 159 ------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI----RADATTYNT 208
K C+ D++++ IL++ CK E A + EM++ G RA T
Sbjct: 174 VTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVR 233
Query: 209 LFMAINNV---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ V PPD+ Y T IDGL K G EA+KV + CV
Sbjct: 234 TLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVP 293
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T T L++ LCK G L+ A ++F +M G P+ V Y +IHGF K G+ ++A L
Sbjct: 294 TEVTYGILVNSLCKAGTLERAEELFR-VMAASGFRPNSVIYTSLIHGFAKSGRMKEACSL 352
Query: 314 LLDMEETGLEPN 325
+M E G P+
Sbjct: 353 FDEMVEAGYRPD 364
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 107/268 (39%), Gaps = 60/268 (22%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F LL + M + P+ VT+ L GLC G + A ++ ++ + + +V+ +
Sbjct: 558 RVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYT 617
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L A++LF+EMV + G PD II+GL K + D
Sbjct: 618 ALCTGLCYQGQVDRAVSLFQEMVRQGGA---PDAAAYCCIINGLIKGKKLEDACKFFDEM 674
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G +P V T + L G ++EA E M+ R +
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS---------------- 718
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
V Y+ LI+G+CK V+ A+ L +M+S G A T +LF
Sbjct: 719 ----VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQ 774
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKN 233
MA PP + +T +DGL K+
Sbjct: 775 ELLQEMAAGGSPPHAATFTAILDGLRKS 802
>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 578
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 183/433 (42%), Gaps = 113/433 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL----------- 49
MG+ F ++G+IL PN+VTF +L+KG C ++L+A ++ ++
Sbjct: 102 MGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVL 161
Query: 50 -----NVFC----------------------CDPNVITFNTLALVALNLFEE-MVNEFGV 81
N C PN+I +NT V L ++ +NE V
Sbjct: 162 YGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNT---VVHGLCKDGNINEARV 218
Query: 82 ICK--------PDVVTCTNIIDGLCKDG--------------------------FMMDQG 107
+C PD+ T +++I GLC+ G M+++G
Sbjct: 219 LCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERG 278
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ D++ N++ + + K+ EA L +M++R P+T TY LM G+ K
Sbjct: 279 EQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEAR 338
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G DV+SYNILI GYCK V +A++L +M + + + TYN++ +
Sbjct: 339 NLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGL 398
Query: 214 NNV-------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSA-IGNHKCVL 253
PPD Y ++ L + V +A+ F I
Sbjct: 399 CKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAP 458
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ + N LI G CK RL A ++F HM +N L PD+VTYNI++ Q KA
Sbjct: 459 NVWSYNILISGCCKNRRLDEAINLFNHMCFKN--LVPDIVTYNILLDALFNGQQLDKAIA 516
Query: 313 LLLDMEETGLEPN 325
LL+ + + G+ PN
Sbjct: 517 LLVQIVDQGISPN 529
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 152/328 (46%), Gaps = 48/328 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
P VTFN LI C G++ A + K+ + C PNV+TF TL L AL
Sbjct: 86 VPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALY 145
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GFMMDQGM------RPDVVTLNV 117
+++EMV + D V +I+GLCK + Q M +P+++ N
Sbjct: 146 IYDEMVARR---IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNT 202
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ L KDG + EA L MI + + P+ TY++L+ G G R +V S L+NG
Sbjct: 203 VVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLC--RAGQRKEVTS---LLNG 257
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+C + V++A L M+ G + D YN L ++G N V
Sbjct: 258 FCLNNKVDEARELFNVMIERGEQHDIINYNIL-----------------MNGYCLNNKVG 300
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA K+F + T L+ G C I ++ A ++FH +++ GL PDV +YNI+
Sbjct: 301 EARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIER-GLVPDVWSYNIL 359
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+CK + +A LL DM L PN
Sbjct: 360 IKGYCKFERVGEAMNLLEDMFLKNLVPN 387
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 65/306 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ +T+ L+ G C ++ EA LF + P+V ++N L A+NL
Sbjct: 316 PDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNL 375
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM-----------RPDVVTLNVMTD 120
E+M + V P+++T +++DGLCK G ++D PDV T N++ +
Sbjct: 376 LEDMFLKNLV---PNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLE 432
Query: 121 NLSKDGKMEEANCLLEVMI-QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+L + +E+A + +I +R PN V+SYNILI+G C
Sbjct: 433 SLCRIECVEKAIAFFKHLIFERSFAPN---------------------VWSYNILISGCC 471
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+R +++A++L M + + D TYN L +D L+ + +A
Sbjct: 472 KNRRLDEAINLFNHMCFKNLVPDIVTYNIL-----------------LDALFNGQQLDKA 514
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + I + + T N LI+GL K GR K A I + + G PDV TY +I+
Sbjct: 515 IALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKI-SLYLSIRGYHPDVKTY--IIN 571
Query: 300 GFCKEG 305
CK G
Sbjct: 572 ELCKGG 577
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 133/320 (41%), Gaps = 67/320 (20%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ LF MV+ + P +V T I+ + K + M +G+ P VT N+
Sbjct: 38 AVALFHRMVDMHPL---PSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + G+M+ A ++ +++ PN T+ TLM GF ++
Sbjct: 95 LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154
Query: 164 CRHDVYSYNILIN--------------------------------------GYCKDRNVE 185
R D Y LIN G CKD N+
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNIN 214
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A LC +M+ +GI D TY++L + V T+ ++G N V EA ++F+
Sbjct: 215 EARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEV-TSLLNGFCLNNKVDEARELFNV 273
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ I N L++G C ++ A +FHM+++ G PD +TY I++HG+C
Sbjct: 274 MIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVER-GEQPDTITYTILMHGYCLID 332
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +A L M E GL P+
Sbjct: 333 KVDEARNLFHGMIERGLVPD 352
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
I F PN+ ++N LI G C R+ EA LF + P+++T+N L L AL +
Sbjct: 451 IFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNIL-LDALFNGQ 509
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
++ ++ + ++DQG+ P++ T N++ + L K G+ + A
Sbjct: 510 QLDKAIALLVQ------------------IVDQGISPNLRTYNILINGLHKGGRPKTAQK 551
Query: 134 LLEVMIQRDVNPNTCTY 150
+ + R +P+ TY
Sbjct: 552 ISLYLSIRGYHPDVKTY 568
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 56/371 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTL- 64
F G +L +++ +SL++GLC R EA LF ++ C P+ I+++T+
Sbjct: 122 AFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVL 181
Query: 65 --------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
+ AL++ V + G C +VV + ++ GL K+G M Q
Sbjct: 182 KSVCDDGRSQWALDILRMAVKQGGG-CPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQ 240
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---WWSKG 163
G+ P+VVT N + L K +++A +L M+ V P+ TYNTL+ G++ W +
Sbjct: 241 GVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQA 300
Query: 164 CR--HDVYSYNILING---------YCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
R ++ S ++ N CK +E+A ML++G + + +Y+TL
Sbjct: 301 VRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHG 360
Query: 210 ---------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + + P+ HV+ ++G K G V EAM +F +
Sbjct: 361 YATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPD 420
Query: 255 IETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T +I C++G + A D F HM+ + G+ P+ Y +I GFC G KA L
Sbjct: 421 VLTYLAVIHAFCRMGSMDDAMDKFNHMI--DKGVEPNFAVYQCLIQGFCTHGDLVKAEEL 478
Query: 314 LLDMEETGLEP 324
+ ++ GL P
Sbjct: 479 VYEIRNKGLGP 489
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 163/360 (45%), Gaps = 65/360 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N+V +++++ GL EG++ EA LF ++ PNV+T+N++ A +
Sbjct: 210 NVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGIL 269
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+MV GV +PD VT +I G G M +G+ P+ VT + L
Sbjct: 270 RQMVGN-GV--QPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFL 326
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV-------------- 168
K G++EEA + M+ + N +Y+TL+ G+A + GC D+
Sbjct: 327 CKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYA--TAGCLVDMSNLFNLMVRDGIVP 384
Query: 169 --YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+ +NIL+NGY K V +A+ + +M G+ D TY + A
Sbjct: 385 NQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKF 444
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH---KCVLTIETCNCLIDGL 265
V P+ VY I G +G +++A ++ I N C+L+ + LI+ L
Sbjct: 445 NHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFAS---LINHL 501
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK GR+ A IF M+++ G DV + +I G+C G+ +A + M G+EP+
Sbjct: 502 CKEGRVFEAQRIFDMIIRT-GEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPD 560
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 161/358 (44%), Gaps = 59/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----------AL 69
PN FN L+ G G + EA +F+ + +P+V+T+ LA++ A+
Sbjct: 384 PNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTY--LAVIHAFCRMGSMDDAM 441
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMT 119
+ F M+++ GV +P+ +I G C G ++ ++G+ P +++ +
Sbjct: 442 DKFNHMIDK-GV--EPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLI 498
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
++L K+G++ EA + +++I+ + + +L+DG+ A S G
Sbjct: 499 NHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIE 558
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D+ +Y L+NG CK+ ++D + L RE+L +G++ TY +
Sbjct: 559 PDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEM 618
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + + Y+ + GL +N EA+ VF + I N +I + K
Sbjct: 619 FQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + A +F + + GL P V TY IM+ KEG ++A G+ M ++GL P
Sbjct: 679 ARRREEAEGLFASI-PDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPT 735
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 148/323 (45%), Gaps = 54/323 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN + LI+G CT G +++A L ++ P +++F +L A +
Sbjct: 454 PNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRI 513
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F+ ++ K DV T++IDG C G M + G+ PD+VT + +
Sbjct: 514 FDMIIRTGE---KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNG 570
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K+G++++ L ++ + V P T TY ++DG + G
Sbjct: 571 CCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVT 630
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +Y+IL+ G C++ E+A+++ +++ + ++ D N + I
Sbjct: 631 IPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIM-----------------I 673
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
++K EA +F++I ++ V T++T +++ L K G ++ A +F +++++ GL
Sbjct: 674 SKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKS-GL 732
Query: 288 TPDVVTYNIMIHGFCKEGQHQKA 310
+P N+++ ++G+ KA
Sbjct: 733 SPTSHFINVIVRTLLEKGEIVKA 755
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 24/180 (13%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
VY+Y+ILI+ C+ R ++ A + +L +G++AD ++L +
Sbjct: 103 VYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLF 162
Query: 214 NNVP-----PDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ +P PD+ Y+T + + +G + L+ +++ G C + + ++ GL
Sbjct: 163 HRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGG-GCPCNVVVYSTVVHGL 221
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G++ A D+FH + Q G+ P+VVTYN +IH CK KA G+L M G++P+
Sbjct: 222 FKEGKVGEACDLFHEMTQQ-GVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 107/274 (39%), Gaps = 48/274 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S F + ++ P++VT+ +L+ G C GRI + LF++L P T
Sbjct: 539 IGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFT 598
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+ + A +F+EM+ + P T + ++ GLC++ +
Sbjct: 599 YGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIP---TYSILLTGLCRNNCTEEAITVFQ 655
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
++ D+V LN+M + K + EEA L + + P TY +M+
Sbjct: 656 KLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENL---- 711
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--NNVPPD 219
K+ +VE+A + ML G+ + N + +
Sbjct: 712 -----------------IKEGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVK 754
Query: 220 SHVYTTYIDG---LYKNGFVLEAMKVFSAIGNHK 250
+ +Y +DG L++ + +FS G H+
Sbjct: 755 AGIYMCRVDGKSILFEASTASMLLSLFSCKGKHR 788
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 178/383 (46%), Gaps = 86/383 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL---------NL 71
PN+VTFN ++KG C EG + EA L + + ++ ++NT L L ++
Sbjct: 291 PNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSV 350
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+EMV E G+ +P++ + ++DGLC++ M+D G+ PD VT +
Sbjct: 351 LDEMV-ENGI--EPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHG 407
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------- 166
GK+ EA +L MI++ +PNT T NTL++ + W +G +
Sbjct: 408 YCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLN--SLWKEGRKSEAEEMLQKMNEKSYQ 465
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA----------------------DA 203
D + NI++NG C++ +E A + EM ++G + D
Sbjct: 466 LDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDV 525
Query: 204 TTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
TY TL M N+ PDS Y T++ K G + A++V
Sbjct: 526 ITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKD 585
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCK 303
+ + C T++T N LI GL G++ ++++ ++ M+ G+ PD+ TYN MI+ C+
Sbjct: 586 MERNGCSKTLQTYNSLILGLGSKGQI---FEMYGLMDEMRERGIHPDICTYNNMINCLCE 642
Query: 304 EGQHQKANGLLLDMEETG-LEPN 325
G+ + A LL +M + G + PN
Sbjct: 643 GGKTKDATSLLHEMLDKGVVSPN 665
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 141/328 (42%), Gaps = 53/328 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALV 67
++ + P TFN LI+ LC + A LF K++ C PN T L A
Sbjct: 142 MIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGR 201
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
E + + G + V ++ CK M ++G+ PDVVT N
Sbjct: 202 TKQALEFVDGKMG--GNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNS 259
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
L + GK+ EA+ I RD+ MDG K +V ++N+++ G
Sbjct: 260 RISALCRAGKVFEAS-----RIFRDMQ---------MDGELGLPKP---NVVTFNLMLKG 302
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+C++ +E+A SL M G +YNT + GL +NG +L
Sbjct: 303 FCQEGMMEEARSLVETMKKGGNFVSLESYNTWLL-----------------GLLRNGKLL 345
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
E V + + I + N ++DGLC+ + A + +++ N G+ PD VTY +
Sbjct: 346 EGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSN-GVYPDTVTYTTL 404
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+HG+C +G+ +A +L +M G PN
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIRKGCHPN 432
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 71/387 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L ++ PN T N+L+ L EGR EA + +K+N + +T
Sbjct: 412 GKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTC 471
Query: 62 N--------------------------TLALVALNLFEEMVNEFGVICK--PDVVTCTNI 93
N T +L N +VN + PDV+T T +
Sbjct: 472 NIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTL 531
Query: 94 IDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I+GLCK G MM + + PD VT + N K GK+ A +L+ M +
Sbjct: 532 INGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGC 591
Query: 144 NPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
+ TYN+L+ G +G D+ +YN +IN C+ +DA S
Sbjct: 592 SKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATS 651
Query: 190 LCREMLSEG-IRADATTYNTLF-----------------MAINNVPPDSHVYTTYIDGLY 231
L EML +G + + +++ L +A++ +Y+ + L
Sbjct: 652 LLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFNELL 711
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G + +A ++F A + LID LCK GRL A + L+ + G D
Sbjct: 712 AGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLI-DKGYCFDH 770
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDME 318
++ +I G K G Q+A+ L ME
Sbjct: 771 SSFIPVIDGLSKRGNKQQADELGRIME 797
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 157/359 (43%), Gaps = 45/359 (12%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L ++ S + P+ TFNSLI G C ++ A LF K+ + +V+++ L
Sbjct: 34 LSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCE 93
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
+E V FG + +PD+ ++ GLCK G M + G RP +
Sbjct: 94 TGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAV 153
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
D + K +EA +L+ M ++ + P T +++ + + GC
Sbjct: 154 VDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 213
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------- 209
+ +V++YN L+ G+C + V A++L +M G+ DA TYN L
Sbjct: 214 KPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFR 273
Query: 210 ---FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M + + D + Y I+ L K+G +A +F ++ T N LI+GLC
Sbjct: 274 LLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLC 333
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G++ IAW M + G TPD TY+ I CK Q+ + +M + ++P+
Sbjct: 334 KSGKVDIAWKFLEK-MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 391
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 152/356 (42%), Gaps = 35/356 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L + PN VTFNSLI GLC G++ A + +K+ C P+ T+
Sbjct: 301 GRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTY 360
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMD 105
++ L + +E ++ G + KP V T +I L K+ G M+
Sbjct: 361 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVS 420
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
G PDVVT +G++ EA +L M + V +T YNTLMDG A
Sbjct: 421 SGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH 480
Query: 159 -------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
S + ++Y IL+ + R VED + L + + I + T LF
Sbjct: 481 AVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAI--ELTDVFGLFD 538
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M N P+S Y++ ++G ++G EA + S + L + L+ CK
Sbjct: 539 VMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSK 598
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R AW + ++Q+ G P +++Y ++ G EGQ KA + ++ P+
Sbjct: 599 RYLDAWVLVCSMIQH-GFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPD 653
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 139/348 (39%), Gaps = 71/348 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S +L + + PN+ T+N+L++G C EG++ +A L K+ V +P+ +T+
Sbjct: 196 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTY 255
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
N L I G C DG M G+ D
Sbjct: 256 NLL-----------------------------IRGQCIDGHIESAFRLLRLMEGDGLIAD 286
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW--- 160
T N + + L KDG+ ++A L + + R + PN T+N+L++G AW
Sbjct: 287 QYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLE 346
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S GC D Y+Y+ I CK + ++ +S EML + +V
Sbjct: 347 KMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQK-----------------DVK 389
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P + YT I L K + + + + C + T + C GRL A ++
Sbjct: 390 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 449
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M M G+T D + YN ++ G GQ A +L M PN
Sbjct: 450 L-MEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 496
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 87/240 (36%), Gaps = 85/240 (35%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA-------------INNV 216
+YN +I C+ ++ A+ M+ G R DA T+N+L + + +
Sbjct: 13 TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72
Query: 217 P------------------------------------PDSHVYTTYIDGLYKNG------ 234
P PD H+Y + GL K G
Sbjct: 73 PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGL 132
Query: 235 FVLEAMK---------VFSAIGNHKC--------------------VLTIETCNCLIDGL 265
+L MK ++A+ + +C + TC +I+
Sbjct: 133 LMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAY 192
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK GR+ A + LM+ G P+V TYN ++ GFC EG+ KA LL M G+ P+
Sbjct: 193 CKEGRMSDALRVLE-LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPD 251
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 168/376 (44%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S ++ P +VTFN++I C EG ++EA +LF L PN I +
Sbjct: 105 GRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMY 164
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------- 106
NTL + N+ E + + G+ PD +T ++ G K G D
Sbjct: 165 NTLMNGYVKMREIDQANMLYEEMRKKGI--APDGITFNILVSGHYKYGREEDGDRLLKDI 222
Query: 107 ---GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G+ PD ++ L G+++EA L M+++ ++P+ +N+++ A+ G
Sbjct: 223 SVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIA--AYSQAG 280
Query: 164 CRHDVY-SYNILIN---------------GYCKDRNVEDAVSLCREMLSEGI-------- 199
+ +Y ++++ G + +++A L +M+ +G+
Sbjct: 281 LEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFT 340
Query: 200 --------RADATTYNTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
R D +L+ M + PD ++ +IDGL K G V EA VF +
Sbjct: 341 VLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRK 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ N LI G CK G+L A + +M++ GL PD+ T N++I G CK+G+ +
Sbjct: 401 GLIPNNFAYNSLICGFCKCGKLNEALKL-EKVMRHRGLLPDIFTTNMIIGGLCKQGRMRS 459
Query: 310 ANGLLLDMEETGLEPN 325
A + +DM +TGL P+
Sbjct: 460 AINVFMDMHQTGLSPD 475
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 157/337 (46%), Gaps = 50/337 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL-------NLF 72
P+ +TFN L+ G GR + RL K ++V P+ F+ +++ L
Sbjct: 193 APDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFD-ISVSGLCWAGRLDEAM 251
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
E +++ P ++ ++I + G M+ G+ P T + + L
Sbjct: 252 EFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGL 311
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS----KGCRHDV 168
S +G+++EA L+ MI++ ++ N + L+D F + W +G DV
Sbjct: 312 SINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDV 371
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+++ I+G K VE+A ++ EML +G+ P++ Y + I
Sbjct: 372 VAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL-----------------IPNNFAYNSLIC 414
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G K G + EA+K+ + + + I T N +I GLCK GR++ A ++F M M GL+
Sbjct: 415 GFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVF-MDMHQTGLS 473
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD++TYN +I+G+CK A+ L+ M +G P+
Sbjct: 474 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPD 510
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 149/356 (41%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P TF+ +I G C +G I L + F C+PN +N + AL
Sbjct: 54 PCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAW 113
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F M+ E G C P VVT +I+ CK+G +++ G P+ + N + +
Sbjct: 114 FNLMI-ERG--CNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNG 170
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K ++++AN L E M ++ + P+ T+N L+ G + + G D
Sbjct: 171 YVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPD 230
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY- 226
++I ++G C +++A+ +ML +G+ +N++ A + + + Y
Sbjct: 231 RSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYK 290
Query: 227 -----------------IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ GL NG + EA ++ + + L+D K G
Sbjct: 291 LMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRG 350
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ M+ G+ PDVV ++ I G K+G ++A + L+M GL PN
Sbjct: 351 DVVGAQSLWGE-MERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPN 405
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 30/228 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+G+++ + N + F L+ G ++ A L+ ++ P+V+ F
Sbjct: 315 GRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAF 374
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
+ L L EE N F + + P+ ++I G CK G M
Sbjct: 375 SAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRH 434
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G+ PD+ T N++ L K G+M A + M Q ++P+ TYNTL++G+
Sbjct: 435 RGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVN 494
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
++ G D+ +YNI I+G+C R + AV + E++S GI
Sbjct: 495 ADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGI 542
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP+ T +SL+ GL GR+ EA L ++ N + F L + A
Sbjct: 297 LTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQ 356
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+L+ EM G+ PDVV + IDGL K G M+ +G+ P+ N +
Sbjct: 357 SLWGEMERR-GIF--PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLI 413
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
K GK+ EA L +VM R + P+ T N ++ G + G
Sbjct: 414 CGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS 473
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
D+ +YN LINGYCK ++ +A +L M + G D TTYN
Sbjct: 474 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYN 515
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 158/356 (44%), Gaps = 57/356 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
N+ TFN+L+ LC EG++ EA L+ ++ PNV+++N + L A ++
Sbjct: 366 NVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVY 425
Query: 73 EEMV-NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM+ N F P+ VT T ++DG K G M D + P TL ++
Sbjct: 426 KEMLDNGF----TPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKG 481
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K G+ E L + + P YNT++DGF G
Sbjct: 482 LCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPS 541
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y LI+G+CK N++ A+ L +M +G++ D Y TL
Sbjct: 542 TVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLN 601
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ + P+ +Y + I G V EA+ ++ + N ++T LIDGL K G
Sbjct: 602 ELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSG 661
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
RL A DI H M + G+ PD + ++I+G C +GQ + A +L DM + P+
Sbjct: 662 RLLYASDI-HTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPS 716
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 167/365 (45%), Gaps = 51/365 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L ++ +PN+V++N++I G C + I A +++K++ PN +TF T+ +
Sbjct: 389 LWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTF-TILMDGY 447
Query: 70 NLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGFMMD----------QGMRPDV 112
++ N F + + P T II GLCK G + QG P
Sbjct: 448 FKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTC 507
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------- 161
+ N + D K+G + A+ + M + + P+T TY +L+DGF +
Sbjct: 508 MPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLND 567
Query: 162 ---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINN 215
KG + D+ +Y LI+G+CK R+++ A L E+ G+ + YN++ F +NN
Sbjct: 568 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNN 627
Query: 216 V---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
V P D YT+ IDGL K+G +L A + + + + +
Sbjct: 628 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 687
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI+GLC G+ + A I M + P V+ YN +I G KEG Q+A L +M +
Sbjct: 688 LINGLCNKGQFENARKILED-MNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDR 746
Query: 321 GLEPN 325
GL P+
Sbjct: 747 GLVPD 751
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 157/359 (43%), Gaps = 75/359 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF-------KKLNV---------FC 53
LL + + + P TF S+I EG + EA RL K +N+ +C
Sbjct: 215 LLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYC 274
Query: 54 CDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
N+ + ALV +N ++E G++ P+ VT + +IDG CK+G M
Sbjct: 275 MQGNLRS----ALVLVN----EISESGLV--PNKVTYSVLIDGCCKNGNIEKAFEFYSEM 324
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---- 159
+G+R V +LN + + K + A + ++ + N T+NTL+ +W
Sbjct: 325 KTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALESGL-ANVFTFNTLL---SWLCKE 380
Query: 160 ---------W----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W +KG +V SYN +I G+C+ N+ A + +EML G +A T
Sbjct: 381 GKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVT- 439
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+T +DG +K G + A +F + + + T T +I GLC
Sbjct: 440 ----------------FTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLC 483
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K GR D+F+ + G P + YN +I GF KEG A+ + +M E G+ P+
Sbjct: 484 KAGRSFEGRDLFNKFVSQ-GFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPS 541
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 133/350 (38%), Gaps = 90/350 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + R+ + P T +IKGLC GR E LF K P + +
Sbjct: 451 GDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPY 510
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ +A N++ EM E G+ P VT T++IDG CK
Sbjct: 511 NTIIDGFIKEGNINLASNVYREMC-EVGIT--PSTVTYTSLIDGFCKGNNIDLALKLLND 567
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +G++ D+ + D K M+ A+ LL + ++PN YN+++ GF
Sbjct: 568 MKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNN 627
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D+ +Y LI+G K + A + EMLS+GI D +
Sbjct: 628 VEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTV 687
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N+ P +Y T I G +K G + EA ++
Sbjct: 688 LINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL-------- 739
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
H M + GL PD +TY+I+++G
Sbjct: 740 ----------------------------HDEMLDRGLVPDNITYDILVNG 761
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 39/256 (15%)
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
KP+ +++ + G++ +G V+T V K+G + EA L + M+
Sbjct: 206 KPNSGYALSLLREMRAAGWIPPEGTFTSVITACV------KEGNVAEALRLKDDMVNCGK 259
Query: 144 NPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGYCKDRNVEDAVS 189
+ N +LM G+ G + +Y++LI+G CK+ N+E A
Sbjct: 260 SMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFE 319
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
EM ++GIR+ + N++ + +T + D L S + N
Sbjct: 320 FYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALE------------SGLAN- 366
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ T N L+ LCK G++ A +++ ++ G++P+VV+YN +I G C++
Sbjct: 367 -----VFTFNTLLSWLCKEGKMNEACNLWDEVIA-KGISPNVVSYNNIILGHCRKDNINA 420
Query: 310 ANGLLLDMEETGLEPN 325
A + +M + G PN
Sbjct: 421 ACKVYKEMLDNGFTPN 436
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
++G D +Y+I ++ C N A+SL REM + G +PP+
Sbjct: 186 ARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGW----------------IPPEG 229
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+T+ I K G V EA+++ + N + + L+ G C G L+ A + +
Sbjct: 230 -TFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 288
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ GL P+ VTY+++I G CK G +KA +M+ G+ +
Sbjct: 289 ISES-GLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 332
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L+ + P +VTFNS++KGLC R +A +F+ ++ P+V +F
Sbjct: 206 GDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSF 265
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
N L A+ ++EM + GV PDVV+ + +I GL MD
Sbjct: 266 NILIGGFCRVGEVEEAMKFYKEM-QQRGVT--PDVVSFSCLI-GLFSTRGKMDHAAAYLR 321
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
G+ PD V ++ + G M EA + + M+ P+ TYNTL++G
Sbjct: 322 EMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQH 381
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G D+ ++ LI+GYC+D N E A+ L +L + +R D YN
Sbjct: 382 RLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYN 441
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M + P+ Y+ ID + G V EA + +
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSK 501
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ I T N +I G C+ G +K +MQ+ + PD++T+N +IHG+ KE
Sbjct: 502 GNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD-NILPDLITFNTLIHGYIKEENMHG 560
Query: 310 ANGLLLDMEETGLEPN 325
A + ME+ ++P+
Sbjct: 561 AFNVFNIMEKEMVQPD 576
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 153/326 (46%), Gaps = 61/326 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
P+ V + +I G C G + EA R+ ++ C P+V+T+NTL L A
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAE 387
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L EM E GV PD+ T T +I G C+DG ++ Q +RPDVV N +
Sbjct: 388 ELLNEM-KERGVT--PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLI 444
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D + + G + +AN L + M R++ PN TY+ ILI+ +C
Sbjct: 445 DGMCRKGDLAKANELWDDMHAREIFPNHVTYS---------------------ILIDSHC 483
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ VE+A EM+S+G + TYN++ I G ++G V +
Sbjct: 484 EKGQVEEAFGFLDEMVSKGNLPNIMTYNSI-----------------IKGYCRSGNVKKG 526
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + T N LI G K + A+++F+ +M+ + PD VTYN++I+
Sbjct: 527 QQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFN-IMEKEMVQPDAVTYNMIIN 585
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF ++G ++A + M +G+EP+
Sbjct: 586 GFSEQGNMEEAGRVFKKMGASGIEPD 611
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/366 (27%), Positives = 161/366 (43%), Gaps = 61/366 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
+L S N T N ++ C +A + ++ C P+V+T N L
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVT 114
A+ L + M N+ KP +VT +++ GLCK MDQ + PDV +
Sbjct: 208 VDAAIALVDSMANKG---LKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRS 264
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N++ + G++EEA + M QR V P+ +++ L+ F+ K
Sbjct: 265 FNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMK 324
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
G D Y ++I G+C+ ++ +A+ + EM+ G D TYNTL
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLL 384
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M V PD +TT I G ++G +A+++F + + + + N LI
Sbjct: 385 DAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLI 444
Query: 263 DGLCKIGRLKIA---WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
DG+C+ G L A WD H + P+ VTY+I+I C++GQ ++A G L +M
Sbjct: 445 DGMCRKGDLAKANELWDDMHAR----EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVS 500
Query: 320 TGLEPN 325
G PN
Sbjct: 501 KGNLPN 506
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L +++ P+++TFN+LI G E + A +F + P+ +T+
Sbjct: 521 GNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTY 580
Query: 62 NTLALVALNLFEEMVN--EFGVICK--------PDVVTCTNIIDGL-----CKDGF---- 102
N + +N F E N E G + K PD T ++I+G K+ F
Sbjct: 581 NMI----INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHD 636
Query: 103 -MMDQGMRPD 111
MM +G PD
Sbjct: 637 EMMHRGFAPD 646
>gi|125579821|gb|EAZ20967.1| hypothetical protein OsJ_36620 [Oryza sativa Japonica Group]
Length = 408
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 143/328 (43%), Gaps = 64/328 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+PN+ +NS+I LC +A + K++ CDP++ITFNTL A
Sbjct: 6 FSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 65
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
+ E + P+ ++ T +I G C G MM +G PDVVT +
Sbjct: 66 HFLREAIRR---ELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 122
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L GK+ EA + E M +R V P DV YN+LI+G C
Sbjct: 123 HGLVVAGKVSEALIVREKMTERQVFP---------------------DVNIYNVLISGLC 161
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K R + A ++ EML + NV PD VY T IDG ++ + +A
Sbjct: 162 KKRMLPAAKNILEEMLEK-----------------NVQPDEFVYATLIDGFIRSENLGDA 204
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML-MQNPGLTPDVVTYNIMI 298
K+F + + I +CN +I G C+ G + A I M M+ G PD TY +I
Sbjct: 205 RKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEA--ILCMSNMRKVGCIPDEFTYTTVI 262
Query: 299 HGFCK-EGQHQKANGLLLDMEETGLEPN 325
G+ K EG A GL +M+ L PN
Sbjct: 263 SGYAKQEGDTDSAEGLFANMQAEALSPN 290
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 48/336 (14%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A+ V+L ++ S P+++TFN+LI GLC EG + +A ++ +PN +++
Sbjct: 26 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 85
Query: 64 LA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
L +VA +L EM+ G PDVVT +I GL G M
Sbjct: 86 LIHGFCMRGELMVASDLLVEMM---GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT 142
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--- 161
++ + PDV NV+ L K + A +LE M++++V P+ Y TL+DGF
Sbjct: 143 ERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLG 202
Query: 162 -----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG D+ S N +I GYC+ + +A+ M G D TY T+
Sbjct: 203 DARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVI 262
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
D T +GL+ N ++A + +G ++ + ++ +
Sbjct: 263 SGYAKQEGD----TDSAEGLFAN---MQAEALSPNVGIQGIQHSMPSSLAFVELIFS--- 312
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ A D F M G P+ +T+ +++GFC G+
Sbjct: 313 -REALD-FKNRMAKKGYVPNPITFLSLLYGFCSVGK 346
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 19/182 (10%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
+G +V YN +I+ C R+ A+ + ++M + G D T+NTL +
Sbjct: 4 RGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRK 63
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+ YT I G G ++ A + + + T LI
Sbjct: 64 AEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIH 123
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GL G++ A I M + PDV YN++I G CK+ A +L +M E ++
Sbjct: 124 GLVVAGKVSEAL-IVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQ 182
Query: 324 PN 325
P+
Sbjct: 183 PD 184
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 158/352 (44%), Gaps = 59/352 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
TFN +++ LC+ G+ A L +++ PN +T+NT+ AL++ EM
Sbjct: 156 TFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREM 211
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDNLSK 124
G+ P+ T +I G CK G M+ +G ++P+ V N +
Sbjct: 212 RERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS---------KGCRHDVYS 170
GK++ A + M++R V TYN L MDG + KG DV++
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
YNILING+CK+ NV+ A+ + M G+RA TY +L A++
Sbjct: 330 YNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAV 389
Query: 216 ---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD +Y I+ +G + A ++ + + T N L+ GLC +GR+
Sbjct: 390 RRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVD 449
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + + + G+ PD+VTYN +I G+ +G + A + +M G P
Sbjct: 450 EARKLIDEMTKR-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 500
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 54/280 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + R++ + T+N L+ L +GR EA L +++ +V T+
Sbjct: 271 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTY 330
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N L AL +FE M + GV + VVT T++I L K G + +
Sbjct: 331 NILINGHCKEGNVKKALEIFENM-SRRGV--RATVVTYTSLIYALSKKGQVQETDKLFDE 387
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G+RPD+V N + ++ S G ++ A ++ M ++ + P+ TYNTLM G
Sbjct: 388 AVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGR 447
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + D+ +YN LI+GY +V+DA+ + EM+++G TYN
Sbjct: 448 VDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 507
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGL 230
L M N + PD Y + I+GL
Sbjct: 508 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR L+ + P++VT+N+LI G +G + +A R+ ++ +P ++T
Sbjct: 445 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLT 504
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD 100
+N L A N+ +EMV E G+ PD T ++I+GL +
Sbjct: 505 YNALIQGLCKNGQGDDAENMVKEMV-ENGIT--PDDSTYISLIEGLTTE 550
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 42/265 (15%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD++ CT++I G CK G + D G PDV+T NV+ + G+ +A L
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKL 176
Query: 135 LEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRHDVYSYNILINGYCK 180
L M++R +P+ T+N L++ G A GC + SYN L++G+CK
Sbjct: 177 LADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCK 236
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
++ +E A+ +M S G D TYNTL A L K+G V A+
Sbjct: 237 EKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA-----------------LCKDGKVDAAV 279
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + + C + T N +IDGL K+G+ A + M+ GL PD++TY+ ++ G
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDE-MRAKGLKPDIITYSSLVGG 338
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+EG+ +A D+E G++PN
Sbjct: 339 LSREGKVDEAIKFFHDLEVLGVKPN 363
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 149/347 (42%), Gaps = 71/347 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ SLI+G C G+ +A R+
Sbjct: 98 GELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIM--------------- 142
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
E++ + G + PDV+T +I G+C G MD +G P
Sbjct: 143 ------------EIIEDSGAV--PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPS 188
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VVT N++ + L + G + A +LE M + PN+ +YN L+ GF
Sbjct: 189 VVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLG 248
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S+GC D+ +YN L+ CKD V+ AV L ++ S+G TYNT+
Sbjct: 249 KMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTV-------- 300
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
IDGL K G +A K+ + I T + L+ GL + G++ A
Sbjct: 301 ---------IDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKF 351
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
FH L + G+ P+ +TYN ++ G CK + +A L M + G +P
Sbjct: 352 FHDL-EVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKP 397
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 132/281 (46%), Gaps = 54/281 (19%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV-- 67
S P+++T+N LI G+C+ GR ++A +L + C P+V+TFN L L+
Sbjct: 148 SGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGR 207
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNV 117
A+++ E+M C P+ ++ ++ G CK+ G M +G PD+VT N
Sbjct: 208 AIDVLEKMPKHG---CTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNT 264
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKG 163
+ L KDGK++ A LL + + +P TYNT++DG + +KG
Sbjct: 265 LLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKG 324
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------- 209
+ D+ +Y+ L+ G ++ V++A+ ++ G++ +A TYN +
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI 384
Query: 210 ----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+M P YT I+GL G EA+++ + +
Sbjct: 385 DFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 32/211 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL------NLFE 73
TPN +++N L+ G C E ++ A K+ C P+++T+NTL L AL +
Sbjct: 221 TPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTL-LTALCKDGKVDAAV 279
Query: 74 EMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
E++N+ C P ++T +IDGL K G M +G++PD++T + + L
Sbjct: 280 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGL 339
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
S++GK++EA + V PN TYN +M G K GC+
Sbjct: 340 SREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTE 399
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
SY ILI G + ++A+ L E+ G+
Sbjct: 400 ASYTILIEGLAYEGLAKEALELLNELCLRGV 430
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 36/241 (14%)
Query: 120 DNLSK---DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------- 162
+NLSK +G++EE LE M+ R P+ +L+ GF K
Sbjct: 89 NNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDS 148
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G DV +YN+LI+G C DA L +M+ G T+N L
Sbjct: 149 GAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + P+S Y + G K + A++ + + C I T N L+
Sbjct: 209 IDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G++ A ++ + L + G +P ++TYN +I G K G+ +A LL +M GL+P
Sbjct: 269 LCKDGKVDAAVELLNQL-SSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKP 327
Query: 325 N 325
+
Sbjct: 328 D 328
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T++SL+ GL EG++ EA + F L V PN IT
Sbjct: 307 VGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAIT 366
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
+N + L A++ MV CKP + T +I+GL +G +
Sbjct: 367 YNAIMLGLCKARKTDRAIDFLAYMVQRG---CKPTEASYTILIEGLAYEGLAKE 417
>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 153/323 (47%), Gaps = 54/323 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+ TFN LI GLC EG + +A L K++ P ++T+NTL LN +
Sbjct: 982 PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTL----LNWY-------- 1029
Query: 81 VICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
CK +ID +M+ +G+ DV T NV DNL + + +A LL+ M
Sbjct: 1030 --CKKGRYKAAIELID------YMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMR 1081
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK-GCRHDVY-------------SYNILINGYCKDRNVE 185
+ ++PN TYNTL++GF K G V+ +YN LI G+C + E
Sbjct: 1082 KEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFE 1141
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A+ L M + G+R + TY TL M +N++ YT I
Sbjct: 1142 EALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLI 1201
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL KNG + EA+++ + + T + LI+G C++G +K A +I M GL
Sbjct: 1202 DGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEII-CRMYRSGL 1260
Query: 288 TPDVVTYNIMIHGFCKEGQHQKA 310
+ + Y+ +I+ FC+ G +A
Sbjct: 1261 VLNKIIYSTLIYNFCQHGNVTEA 1283
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 150/338 (44%), Gaps = 53/338 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R++ ++LL ++ +PN VT+N+LI G EG+I AA++F +++ F PN +T+N
Sbjct: 1069 RSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYN 1128
Query: 63 TLALVALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
L G C D ++D M G+R + VT + +
Sbjct: 1129 AL--------------IGGHCHVGDFEEALRLLD------HMEAAGLRLNEVTYGTLLNG 1168
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K K E A LLE M D+ Y L+DG + G D
Sbjct: 1169 LCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPD 1228
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y+ LING+C+ N++ A + M G + +N + +Y+T I
Sbjct: 1229 VITYSSLINGFCRVGNIKSAKEIICRMYRSG------------LVLNKI-----IYSTLI 1271
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
++G V EAMKV++ + + TCN L+ LC+ G+L A + F M GL
Sbjct: 1272 YNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEA-EKFLCHMSRIGL 1330
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ +TY+ +I+G+ G A DM + G P+
Sbjct: 1331 VPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPS 1368
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 144/357 (40%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F ++ P+ V FN++I G++++A F + + PN+ T+
Sbjct: 1489 GHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATY 1548
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L L L+L+ M+ E G+ PD +T ++I GL K G
Sbjct: 1549 NILLHGFSKKQALLRYLSLYSTMMRE-GIF--PDKLTFHSLILGLSKSGIPDLGVKLLGK 1605
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G D T N++ + S+ GKM +A L+ M V P+ TYN + +G S
Sbjct: 1606 MIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSA 1665
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G Y LING C+ +++ A L EM + G + +
Sbjct: 1666 FRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESA 1725
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ + GL G +AM V + + + TI T L+ C+
Sbjct: 1726 M-----------------VRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRD 1768
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A + +M+ GL DVV YN++I G C G A L +M L PN
Sbjct: 1769 AKIAEALKL-KGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPN 1824
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 145/357 (40%), Gaps = 91/357 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ T+ SL+KGLC G ++EA + +L+ + + +NTL A+ L
Sbjct: 1367 PSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVAL 1426
Query: 72 FEEMVNE----------------------------FGVICK-----PDVVTCTNIIDGLC 98
F++MV FG P+ V T ++DGL
Sbjct: 1427 FDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLS 1486
Query: 99 KDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G MM +G PD V N + D+ S+ G+M +AN M V PN
Sbjct: 1487 KAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLA 1546
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
TYN L+ GF+ K + + +SL M+ EGI D T+++
Sbjct: 1547 TYNILLHGFS---------------------KKQALLRYLSLYSTMMREGIFPDKLTFHS 1585
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L + GL K+G +K+ + + T N LI+ +
Sbjct: 1586 LIL-----------------GLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSES 1628
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+++ A+D+ + M G+ PD TYN + +G K+ +++ +L +M E G+ P
Sbjct: 1629 GKMRKAFDLVN-FMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPK 1684
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 101/244 (41%), Gaps = 33/244 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P V T N++ ++ KD + E L M + + PN T+N L++G
Sbjct: 944 GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 1003
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
G + +YN L+N YCK + A+ L M+ +GI AD TYN
Sbjct: 1004 GNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDN 1063
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + P+ Y T I+G K G + A +VF+ +
Sbjct: 1064 LCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPN 1123
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N LI G C +G + A + M+ GL + VTY +++G CK + + A LL
Sbjct: 1124 CVTYNALIGGHCHVGDFEEALRLLDH-MEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLL 1182
Query: 315 LDME 318
M
Sbjct: 1183 ERMR 1186
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 146/350 (41%), Gaps = 55/350 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL R+ ++ + + LI GLC G + EA +L + +P+VIT+++L +
Sbjct: 1181 LLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSL----I 1236
Query: 70 NLFEEMVN---EFGVICKP-------DVVTCTNIIDGLCKDGFMMDQ----------GMR 109
N F + N +IC+ + + + +I C+ G + + G
Sbjct: 1237 NGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHG 1296
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAW 159
D T NV+ +L +DGK+ EA L M + + PN+ TY+ +++G F++
Sbjct: 1297 ADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSF 1356
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ G ++Y L+ G CK N+ +A + D+ YNTL
Sbjct: 1357 FDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAET-- 1414
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
K+G + EA+ +F + + + T + L+ GLC+ G+ A
Sbjct: 1415 ---------------CKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAV 1459
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M L P+ V Y ++ G K G + A +M + G P+
Sbjct: 1460 CLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPD 1509
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSH 221
+H + Y + + K R + A S+ R + GI + + L + N++P
Sbjct: 860 KHLTHMYCLTAHILVKARMYDSAKSILRHLCQMGI-GSKSIFGALMDTYPLCNSIPS--- 915
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V+ I K G + A++ F +G ++ TCN ++ + K R ++ W +F
Sbjct: 916 VFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFRE- 974
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M + G+ P+V T+NI+I+G C EG +KA LL MEE G P
Sbjct: 975 MSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVP 1017
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G LLG+++M + TFN LI G++ +A L +N P+ T+N +
Sbjct: 1599 GVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFN 1658
Query: 65 ALVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGM 108
L + F E + E GVI P +I+G+C+ G M G
Sbjct: 1659 GLNKKSAFRESTVVLHEMLENGVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 1716
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
V + M L GK E+A +L+ M++ + P T+ TLM F +K
Sbjct: 1717 GSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALK 1776
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
G + DV +YN+LI G C + + A L EM + + TTY L AI+
Sbjct: 1777 LKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAIS 1836
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T N LI+GLC G LK A ++ + +N G P +VTYN +++ +CK+G+++ A L+
Sbjct: 984 VGTFNILINGLCVEGNLKKAGNLLKQMEEN-GFVPTIVTYNTLLNWYCKKGRYKAAIELI 1042
Query: 315 LDMEETGLEPN 325
M G+E +
Sbjct: 1043 DYMICKGIEAD 1053
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 159/358 (44%), Gaps = 59/358 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ P +N++I G + GR +A +L ++L C P+V++F
Sbjct: 164 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 223
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N++ AL+LFE M + +P+ T IID LC G
Sbjct: 224 NSILTCLGKKRKVDEALSLFEVMKKD----AEPNSSTYNIIIDMLCLGGRVEEAYRILDE 279
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + P+++T+N+M D L K K+EEA + E QR NP+ TY +L+DG K
Sbjct: 280 MEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG--KK 337
Query: 163 GCRHDVYS----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + Y Y LI + ED + +E++ G + D T
Sbjct: 338 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLL 397
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N TY+D ++K G V + +F I ++ + + + + LI GL
Sbjct: 398 N-----------------TYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLT 440
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
K G+ + +IFH + Q G D YN ++ GFCK G+ KA +L +M+E ++P
Sbjct: 441 KAGQARETSNIFHAMKQQ-GFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQP 497
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++L + N V + SLI+ GR + ++FK+L C P++
Sbjct: 338 GQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLL 397
Query: 62 NTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
NT E E + +G + PDV + + +I GL K G M
Sbjct: 398 NTYMDCVFKAGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAGQARETSNIFHAM 455
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
QG D N + D K GK+ +A +LE M ++ V P TY ++DG A
Sbjct: 456 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 515
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG +V Y+ LI+G+ K +++A + EM+ +G+ + T+N+L
Sbjct: 516 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 575
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+D L K + EA+ F ++ KC T + LI+GLC++
Sbjct: 576 -----------------LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 618
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+VVTY MI G K G A L + G P+
Sbjct: 619 KYNKAF-VFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 673
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 136/317 (42%), Gaps = 58/317 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKP 85
F +L++ L EG++ +A L ++ C +P+++ +N V ++ F + N
Sbjct: 83 FTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYN----VCIDCFGKAGN-------- 130
Query: 86 DVVTCTNIIDGLCKDGFMMD---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
+D CK F + QG++PD V+ M L K G++ EA L M
Sbjct: 131 --------VDMACK--FFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER 180
Query: 143 VNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
P YNT++ G+ +GC V S+N ++ K R V++A+
Sbjct: 181 SVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEAL 240
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
SL E ++ DA P+S Y ID L G V EA ++ + +
Sbjct: 241 SLF-----EVMKKDAE-------------PNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 282
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T N ++D LCK +L+ A+ IF Q G PD VTY +I G K+GQ
Sbjct: 283 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQR-GCNPDCVTYCSLIDGLGKKGQVD 341
Query: 309 KANGLLLDMEETGLEPN 325
+A L M + G N
Sbjct: 342 EAYRLFEKMLDAGHNAN 358
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLF 72
N+V ++SLI G GRI EA + +++ PNV T+N+L ALV AL F
Sbjct: 533 NVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCF 592
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNL 122
+ M + C P+ T + +I+GLC+ F M QG+ P+VVT M L
Sbjct: 593 QSMKE---MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGL 649
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+K G + +A L E P+ ++N L++G +
Sbjct: 650 AKVGNITDAYSLFERFKANGGIPDAASFNALIEGMS 685
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 18/154 (11%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
R +Y +LI + R E A+ L R+M G H++T
Sbjct: 42 RPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGV-----------------HLFT 84
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T + L + G V +A+ + + I N ID K G + +A FH L +
Sbjct: 85 TLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHEL-KA 143
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL PD V+Y MI CK G+ +A L ME
Sbjct: 144 QGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQME 177
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 91/236 (38%), Gaps = 34/236 (14%)
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L + ++++A + VM + P Y L+ A + G
Sbjct: 20 LVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVG 79
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V+ + L+ ++ V DA++L E+ + D YN
Sbjct: 80 VHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFH 139
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ + PD YT+ I L K G + EA ++F+ + + V N +I G G
Sbjct: 140 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG 199
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + A+ + L + G P VV++N ++ K+ + +A L M++ EPN
Sbjct: 200 RFEDAYKLLERLRER-GCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPN 253
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 170/377 (45%), Gaps = 59/377 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S ++ P +VTFN++I C EG ++EA +LF L PN I +
Sbjct: 315 GRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMY 374
Query: 62 NTL--ALVALN-------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
NTL V + L+EEM + G+ PD +T ++ G K G D
Sbjct: 375 NTLMNGYVKMREIDQANMLYEEMRKK-GI--APDGITFNILVSGHYKYGREEDGDRLLKD 431
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G+ PD ++ L G+++EA L M+++ ++P+ +N+++ ++
Sbjct: 432 ISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYS--QA 489
Query: 163 GCRHDVY-SYNILIN---------------GYCKDRNVEDAVSLCREMLSEGI------- 199
G + +Y ++++ G + +++A L +M+ +G+
Sbjct: 490 GLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAF 549
Query: 200 ---------RADATTYNTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
R D +L+ M + PD ++ +IDGL K G V EA VF +
Sbjct: 550 TVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 609
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ N LI G CK G+L A + +M++ GL PD+ T N++I G CK+G+ +
Sbjct: 610 KGLIPNNFAYNSLICGFCKCGKLNEALKL-EKVMRHRGLLPDIFTTNMIIGGLCKQGRMR 668
Query: 309 KANGLLLDMEETGLEPN 325
A + +DM +TGL P+
Sbjct: 669 SAINVFMDMHQTGLSPD 685
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 69/347 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL I + P+ F+ + GLC GR+ EA + P++I F
Sbjct: 420 GREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAF 479
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
N++ A ++ MV+ FG+ P TC++++ GL
Sbjct: 480 NSVIAAYSQAGLEDKAFEAYKLMVH-FGLTPSPS--TCSSLLMGL--------------- 521
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW-- 160
S +G+++EA L+ MI++ ++ N + L+D F + W
Sbjct: 522 ----------SINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGE 571
Query: 161 --SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+G DV +++ I+G K VE+A ++ EML +G+ P
Sbjct: 572 MERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL-----------------IP 614
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
++ Y + I G K G + EA+K+ + + + I T N +I GLCK GR++ A ++F
Sbjct: 615 NNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVF 674
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M M GL+PD++TYN +I+G+CK A+ L+ M +G P+
Sbjct: 675 -MDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPD 720
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 149/356 (41%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P TF+ +I G C +G I L + F C+PN +N + AL
Sbjct: 264 PCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAW 323
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F M+ E G C P VVT +I+ CK+G +++ G P+ + N + +
Sbjct: 324 FNLMI-ERG--CNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNG 380
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K ++++AN L E M ++ + P+ T+N L+ G + + G D
Sbjct: 381 YVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPD 440
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY- 226
++I ++G C +++A+ +ML +G+ +N++ A + + + Y
Sbjct: 441 RSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYK 500
Query: 227 -----------------IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ GL NG + EA ++ + + L+D K G
Sbjct: 501 LMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRG 560
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ M+ G+ PDVV ++ I G K+G ++A + L+M GL PN
Sbjct: 561 DVVGAQSLWGE-MERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPN 615
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 150/353 (42%), Gaps = 60/353 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+G+++ + N + F L+ G ++ A L+ ++ P+V+ F
Sbjct: 525 GRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAF 584
Query: 62 NT---------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ L A N+F EM+ + G+I P+ ++I G CK G
Sbjct: 585 SAFIDGLSKQGLVEEAYNVFLEMLRK-GLI--PNNFAYNSLICGFCKCGKLNEALKLEKV 641
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M +G+ PD+ T N++ L K G+M A + M Q ++P+ TYNTL++G+
Sbjct: 642 MRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFD 701
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++ G D+ +YNI I+G+C R + AV + E++S GI + TYN+
Sbjct: 702 MVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNS 761
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ +N V D + AM + + + V + T N L+ K
Sbjct: 762 M---LNGVCSD---------------ILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQ 803
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIM--IHGFCKEGQHQK---ANGLLLD 316
G + H L + P D +TY IM H ++ + A L LD
Sbjct: 804 GMPERTLMWGHKLSEIP-YAFDEITYKIMDKAHHILEDADFSRVTSAKSLFLD 855
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 151/331 (45%), Gaps = 64/331 (19%)
Query: 15 LMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++ C P ++ FN L+ C EG I A +F + + P+V++FNTL
Sbjct: 127 ILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ KM+EA+
Sbjct: 178 --MNGY--------IKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHK 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ R + PN T+ TL+D G+CK+ ++ A+ + ++
Sbjct: 228 LFDEMLDRGLVPNGVTFTTLID---------------------GHCKNGKLDLAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+G D TYNTL M++ + PD YTT IDG K G
Sbjct: 267 MLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A + + L + LI GLCK GR + D ML M + GL PD T
Sbjct: 327 LETAFEYRKRMIKENIRLDDVSYTALISGLCKEGR---SVDAEKMLREMLSVGLKPDTGT 383
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
Y I++H FCK G + + LL +M+ G P
Sbjct: 384 YTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N++ D K+G++ A + + + + + P+ ++NTLM+G+ A
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
+ G + DVY+Y++LING CK+ +++A L EML G+ + T+ TL
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLD 258
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M PD Y T I GL K G + +A + + T LI
Sbjct: 259 LAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG CK G L+ A++ + M + D V+Y +I G CKEG+ A +L +M GL
Sbjct: 319 DGSCKEGDLETAFE-YRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377
Query: 323 EPN 325
+P+
Sbjct: 378 KPD 380
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 105/231 (45%), Gaps = 53/231 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L + S P++ T++ LI GLC E ++ EA +L
Sbjct: 184 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKL--------------- 228
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
F+EM++ G++ P+ VT T +IDG CK+G M+ QG P
Sbjct: 229 -----------FDEMLDR-GLV--PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSP 274
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW 160
D +T N + L K G + +A L + M + + P+ TY TL+DG F +
Sbjct: 275 DXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYR 334
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ R D SY LI+G CK+ DA + REMLS G++ D TY
Sbjct: 335 KRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYT 385
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 21/182 (11%)
Query: 164 CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
CR+ +Y +NIL++ +CK+ + A S+ + G+R ++NTL
Sbjct: 130 CRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + V PD + Y+ I+GL K + EA K+F + + V T LID
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLID 249
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G CK G+L +A +I+ ++ G +PD +TYN +I+G CK+G +A L +M GL+
Sbjct: 250 GHCKNGKLDLAMEIYKQMLSQ-GFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLK 308
Query: 324 PN 325
P+
Sbjct: 309 PD 310
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 43/208 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L PN VTF +LI G C G++ A ++K++ P+ IT+NTL
Sbjct: 228 LFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLC 287
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A +L +EM + G+ KPD +T T +IDG CK+G M+ + +R
Sbjct: 288 KKGDLXQAKDLXDEMSMK-GL--KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D V+ + L K+G+ +A +L M+ + P+T TY +M F
Sbjct: 345 DDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEF------------- 391
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEG 198
CK+ +V+ L +EM +G
Sbjct: 392 --------CKNGDVKMGSKLLKEMQRDG 411
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 128 MEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVE 185
+ EA L+++++ R + + + T+++ +KG R D+Y ++ LI Y + +
Sbjct: 29 LPEAKSLIQIVVSRKGKDSASAVFATILE-----TKGAQRSDIYVFSGLITAYLESGFLR 83
Query: 186 DAVS---------------LCREMLSEGIRADATTYNTLFMAINN------VPPDSHVYT 224
DA+ CR++L ++ Y L + P + +
Sbjct: 84 DAIECFRLTRENKYWVPFDTCRKVLEHLMKL---KYFKLVWSFYKEILECRYPASLYFFN 140
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+D K G + A VF I ++ + N L++G K+G L + + M
Sbjct: 141 ILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRL-KSAMHA 199
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TY+++I+G CKE + +A+ L +M + GL PN
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPN 240
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + + +A SL + ++S +G + + + T+ D +V+
Sbjct: 10 RHTLHSYCTMIHFLCTHQMLPEAKSLIQIVVSRKGKDSASAVFATILETKGAQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ F +K + +TC +++ L K+ K+ W + +++
Sbjct: 70 SGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +NI++ FCKEG+ + A + + + GL P+
Sbjct: 130 CR-YPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPS 170
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 167/391 (42%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VTFN LI GL +G + +A L +++ + T+N L + AL L
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+EEMV GV P V + I+ G CK+G M D + + PD+++ N +
Sbjct: 330 WEEMVTR-GV--SPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
+ G + EA LL+ + R+++ N TYNTL+DG ++G D
Sbjct: 387 FCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPD 446
Query: 168 VYSYNILINGYCKDRNV-----------------------------------EDAVSLCR 192
V +Y +L+NG CK N+ A L
Sbjct: 447 VVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQE 506
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
EML++G D TYN M + PD YT+++ +NG
Sbjct: 507 EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENG 566
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ E ++F + + T+ T LI GRL A F + MQ G+ P+V+TY
Sbjct: 567 HLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYF-LEMQEKGVVPNVITY 625
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N++I+GFCK + +A ++M+E G+ PN
Sbjct: 626 NVLINGFCKVRKMDQACKFFIEMQEKGIFPN 656
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 152/355 (42%), Gaps = 55/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P + T+N+++ C G + A L K+ C P+ +TFN L A L
Sbjct: 235 PTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGL 294
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM G+ P T +I G CK G M+ +G+ P V + N +
Sbjct: 295 IQEMAKA-GLRVSP--YTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYG 351
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
K+GKM +A L M+++++ P+ +YNTL+ GF + +
Sbjct: 352 FCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFN 411
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +YN LI+G C+ ++E A+ L +M++ GI D TY L
Sbjct: 412 IVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFD 471
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + PD YT I G K G +A K+ + + T N ++GLCK+G
Sbjct: 472 EMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLG 531
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L+ A ++ ++++ G PD VTY +H + G ++ + DM G P
Sbjct: 532 NLEEAGELLQKMIRD-GHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTP 585
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 51/332 (15%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV 67
++ +++ + F P++ N ++K L + +++A +++ + + P V T+NT
Sbjct: 187 LLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNT---- 242
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
M++ F CK V +D + K M ++G P VT NV+ + LSK G+
Sbjct: 243 -------MLHSF---CKGGEVQ--RALDLVPK---MQERGCYPSEVTFNVLINGLSKKGE 287
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGCRHDVYSYNI 173
+++A L++ M + + + TYN L+ G+ A W ++G V S+N
Sbjct: 288 LQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNT 347
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
++ G+CK+ + DA +ML + + D +YNTL I G +
Sbjct: 348 IMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTL-----------------IYGFCRL 390
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + EA + + I T N LIDGLC++G L+ A + ++ N G+ PDVVT
Sbjct: 391 GNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMI-NRGIHPDVVT 449
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++++G CK G A +M GL P+
Sbjct: 450 YTVLVNGACKLGNMLMAKEFFDEMLHVGLAPD 481
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 145/344 (42%), Gaps = 61/344 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F+LL + + N+VT+N+LI GLC G + A +L + + P+V+T
Sbjct: 390 LGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVT 449
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L L+A F+EM++ V PD T I G K G
Sbjct: 450 YTVLVNGACKLGNMLMAKEFFDEMLH---VGLAPDQFAYTARIVGELKLGDTAKAFKLQE 506
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G PDV+T NV + L K G +EEA LL+ MI+ P+ TY + M
Sbjct: 507 EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFM------- 559
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+ + ++ ++ + + +MLS G TY L A H
Sbjct: 560 --------------HAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHA--------H 597
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+D AM F + V + T N LI+G CK+ ++ A F +
Sbjct: 598 ALNGRLDW---------AMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFF-IE 647
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ P+ TY I+I+ C G+ Q+A L M + P+
Sbjct: 648 MQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPD 691
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 53/239 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + F L +L F P+++T+N + GLC G + EA L +K
Sbjct: 495 LGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQK------------ 542
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
M+ + V PD VT T+ + ++G M+ +G P
Sbjct: 543 --------------MIRDGHV---PDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTP 585
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
VVT V+ + +G+++ A M ++ V PN TYN L++GF
Sbjct: 586 TVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFF 645
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KG + Y+Y ILIN C ++A+ L +ML + IR D+ T+ L ++
Sbjct: 646 IEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKLDK 704
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 146/328 (44%), Gaps = 65/328 (19%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNEF 79
TFN LI+GLC G+ +A L ++ F C+P+++T+NTL LN EM +
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV 267
Query: 80 --GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
G +C PDVVT T++I G C K GKM EA+ LL+
Sbjct: 268 KSGSVCSPDVVTYTSMISGYC-------------------------KAGKMREASSLLDD 302
Query: 138 MIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRN 183
M++ + P T+N L+DG+A S GC DV ++ LI+GYC+
Sbjct: 303 MLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQ 362
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V L EM + G+ +A TY+ L +A ++ P +Y
Sbjct: 363 VSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP 422
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDG K G V EA + + KC T LI G C GR+ A IFH ++
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA-I 481
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGL 313
G +PD +T + ++ K G ++A L
Sbjct: 482 GCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 36/224 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++VT+ S+I G C G++ EA+ L + P +TFN L L A
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTD 120
+ +M++ FG C PDVVT T++IDG C+ GF M +GM P+ T +++ +
Sbjct: 334 IRGKMIS-FG--CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + ++ +A LL + +D+ P YN ++DGF K C+
Sbjct: 391 ALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D ++ ILI G+C + +AVS+ +M++ G D T ++L
Sbjct: 451 DKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLL 494
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D T N++ L GK E+A LL VM P+ TYNTL+ GF ++
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMF 264
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
C DV +Y +I+GYCK + +A SL +ML GI T+N L
Sbjct: 265 KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M PD +T+ IDG + G V + +++ + T
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ LI+ LC RL A ++ L + + P YN +I GFCK G+ +AN ++ +M
Sbjct: 385 YSILINALCNENRLLKARELLGQL-ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443
Query: 318 EETGLEPN 325
E+ +P+
Sbjct: 444 EKKKCKPD 451
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 97/231 (41%), Gaps = 33/231 (14%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+R T N++T +L K G + A + E M V+PN L+ FA KG H
Sbjct: 99 IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFA--EKGKLHF 156
Query: 168 VYSY--------------NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ N L+N K VEDA+ L E L D T+N L
Sbjct: 157 ATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNIL---- 212
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I GL G +A+++ + C I T N LI G CK L
Sbjct: 213 -------------IRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNK 259
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A ++F + +PDVVTY MI G+CK G+ ++A+ LL DM G+ P
Sbjct: 260 ASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 30/206 (14%)
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKG-----CRHDVYSYNILINGYCKDRNVEDAVS 189
EV+ + D NP+ GF +W RH ++YN+L CK + A
Sbjct: 73 FEVVKKLDNNPHI--------GFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQ 124
Query: 190 LCREMLSEGI----------------RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
+ M S+G+ + L + V V + ++ L K
Sbjct: 125 MFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKL 184
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
V +AMK+F + +T N LI GLC +G+ + A ++ +M G PD+VT
Sbjct: 185 DRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLG-VMSGFGCEPDIVT 243
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEE 319
YN +I GFCK + KA+ + D++
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKS 269
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 28/178 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S GF L + PN T++ LI LC E R+L+A L +L P
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 61 FNTLALVALNLF--EEMVNEFGVI--------CKPDVVTCTNIIDGLCKDGFMMDQ---- 106
+N + ++ F VNE VI CKPD +T T +I G C G M +
Sbjct: 420 YNPV----IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475
Query: 107 ------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN----PNTCTYNTLM 154
G PD +T++ + L K G +EA L ++ + N P T T N +
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNVVPPETKTANATL 533
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 73/360 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+V N+++ G C EG + EA RL +++ V PNV+TFN L A +F
Sbjct: 206 NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIF 265
Query: 73 EEMVNEFGV-ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVV----------TLNVMTDN 121
++M ++ + +PD VT ++ G C GF+ + + D++ + N
Sbjct: 266 QDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSG 325
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHD 167
L ++G++ EA LL M + PN+ TYN ++ G K D
Sbjct: 326 LVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPD 385
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y L++ YC N+ A + EM +G ++ TYN L +
Sbjct: 386 VVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQS--------------- 430
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI---------- 277
L++ G EA ++ + L CN +IDGLC+ RL +A DI
Sbjct: 431 --LWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSG 488
Query: 278 --------FHMLMQNPGLT----PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F ++ + ++ PD +TY+I+I CKEG+ +A LL+M + P+
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPD 548
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 175/432 (40%), Gaps = 123/432 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNVITFNTL- 64
L+ R+ + PN+VTFN+ I LC GR+L+A R+F+ + P+ +TF+ +
Sbjct: 229 LVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVML 288
Query: 65 ------------------------------------ALV-------ALNLFEEMVNEFGV 81
LV A L EM +E G+
Sbjct: 289 SGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQELLREMAHE-GI 347
Query: 82 ICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+P+ T I+ GLCK+G F+ M PDVVT + G + A
Sbjct: 348 --QPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAA 405
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNILIN 176
N +L+ M Q+ PN+ TYN L+ W + KG D NI+I+
Sbjct: 406 NRILDEMAQKGCAPNSFTYNVLLQSL-WRAGRTTEAERLLERMNEKGYSLDTAGCNIIID 464
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRA-----------------------DATTYNTLF--- 210
G C++ ++ A+ + M EG A D TY+ L
Sbjct: 465 GLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILISAL 524
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + ++ PDS +Y T+I G K+G A+KV + C +
Sbjct: 525 CKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPST 584
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N LI G + + + +I ++ M+ G++P+V+TYN +I FC++G KA L
Sbjct: 585 RTYNLLIRGFEEKHK---SEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPL 641
Query: 314 LLDMEETGLEPN 325
L +M + L PN
Sbjct: 642 LDEMLQNELVPN 653
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 127/297 (42%), Gaps = 38/297 (12%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ +T++ LI LC EGR EA + ++ V P+ + ++T +A+ +
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
+M + C P T +I G + M ++G+ P+V+T N + +
Sbjct: 572 LRDMEKKG---CNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKS 628
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-HDVYSYNILINGYCK 180
+ G + +A LL+ M+Q ++ PN +++ L+ + C+ D S ++ + +
Sbjct: 629 FCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAY------CKITDFPSAQMVFDAALR 682
Query: 181 DRNVEDAVS--LCREMLSEGIRADATTYNTLFMAIN-NVPPDSHVYTTYIDGLYKNGFVL 237
++ + +C E+ + G +A N L MA+ V S Y I GL + G V
Sbjct: 683 TCGQKEVLYCLMCTELTTYGKWIEAK--NILEMALEMRVSIQSFPYKQIISGLCEVGEVD 740
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK----IAWDIFHMLMQNPGLTPD 290
A + + + + +ID L G+ + ++ + M +N GL D
Sbjct: 741 HAHSLLKLLIAKRHLFDPAAFMPVIDALGDRGKKQDVDMLSAKMMEMADRNDGLGTD 797
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 154/347 (44%), Gaps = 53/347 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ F L + + P++ T+ LI C G I +A + F ++ C PNV+T+
Sbjct: 474 SKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTY 533
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV 112
L VA LFE M+ E CKP+VVT T +IDG CK G +
Sbjct: 534 TALIHAYLKAKQMPVADELFEMMLLEG---CKPNVVTYTALIDGHCKAGQIEKACQIYAR 590
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
+ ++ + ++ K K++ NC PN TY L+DG
Sbjct: 591 MRGDIESSDMDKYFKLDHNNC---------EGPNVITYGALVDGLCKANRVKEAHELLDT 641
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ GC + Y+ +I+G+CK ++DA + +M G P
Sbjct: 642 MLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG-----------------YSP 684
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ + Y+++ID L+K+ + +KV S + + C + ++DGLCKIG+ A+ +
Sbjct: 685 NLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLM 744
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ G P+VVTY MI GF K G+ ++ L DM G PN
Sbjct: 745 -LKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPN 790
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 169/387 (43%), Gaps = 73/387 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
+L R+ S PN+VT+ L+ G +G++ R+ + C PN FN+L
Sbjct: 301 ILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYC 360
Query: 68 -------ALNLFEEMV-----------NEF-GVICKPDVVTCTNIIDGLCKDGF--MMDQ 106
A LF++M+ N F G +C + ++I+D L + + M+D
Sbjct: 361 KSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILD-LVEKAYSEMLDL 419
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DG 156
G+ + V ++ L GK ++A ++ M+ + P+ TY+ ++
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479
Query: 157 FAWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
F+ + + R+ VY+Y ILI+ +CK ++ A EML +G + TY L
Sbjct: 480 FSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHA 539
Query: 210 FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI------GN 248
++ +P P+ YT IDG K G + +A ++++ + +
Sbjct: 540 YLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSD 599
Query: 249 HKCVLTIETCNC----------LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
++ NC L+DGLCK R+K A ++ ++ + G P+ + Y+ +I
Sbjct: 600 MDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAH-GCEPNQIVYDAVI 658
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ Q A + M E G PN
Sbjct: 659 DGFCKIGKLQDAQEVFTKMSERGYSPN 685
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 139/342 (40%), Gaps = 56/342 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68
C PN++T+ +L+ GLC R+ EA L + C+PN I ++ + A
Sbjct: 611 CEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDA 670
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+F +M +E G P++ T ++ ID L KD M++ P+VV M
Sbjct: 671 QEVFTKM-SERGY--SPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEM 727
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
D L K GK +EA L+ M ++ NPN TY ++DGF SKGC
Sbjct: 728 VDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGC 787
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ +Y +LIN C + +++A L EM TY P +
Sbjct: 788 APNFITYRVLINHCCSNGLLDEAYKLLDEM--------KQTY---------WPKHILSHR 830
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+G + + ++ + + ++ V LID K GRL++A D+ + +
Sbjct: 831 KIIEGFSQE--FITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSS 888
Query: 285 PG-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P + Y +I + KA L M + P
Sbjct: 889 PSHAVSNKYLYASLIENLSHASKVDKALELYASMISKNVVPE 930
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 142/356 (39%), Gaps = 66/356 (18%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
LGR+ + P+ T+N+LI+ + L+ A L K+ V+ TL+ A +
Sbjct: 199 LGRLKDFGYKPSQTTYNALIQVFLRADK-LDTAYLVKR--EMLSYAFVMDRYTLSCFAYS 255
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-MMDQG--MRPDVVTLNVMTDNLSKDGK 127
L CK G C++ F ++D+ PD V N M L +
Sbjct: 256 L-----------CK----------GGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASL 294
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNI 173
EEA +L M PN TY L+ G ++GC + +N
Sbjct: 295 FEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNS 354
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--NNVPPDSHV-------YT 224
LI+ YCK R+ A L ++M+ G + YN ++ N P S + Y+
Sbjct: 355 LIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYS 414
Query: 225 TYID-GLYKN--------------GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+D G+ N G +A K+ + V T + +I LC
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDAS 474
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A+ +F + +N G+ P V TY I+I FCK G Q+A +M G PN
Sbjct: 475 KVEKAFSLFEEMKRN-GIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPN 529
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 125/280 (44%), Gaps = 46/280 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L ++L + TPN+V + ++ GLC G+ EA +L K+ C+PNV+T+
Sbjct: 708 VLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTA------ 761
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG K + C + +C +G P+ +T V+ ++ +G ++
Sbjct: 762 -----MIDGFGKSGK--IEQCLELFRDMC------SKGCAPNFITYRVLINHCCSNGLLD 808
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---SKGCRHDVYS---------YNILING 177
EA LL+ M Q + ++ +++GF+ S G ++ Y ILI+
Sbjct: 809 EAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIGLLDELSENESVPVDSLYRILIDN 868
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
Y K +E A+ L E+ S A + Y +Y + I+ L V
Sbjct: 869 YIKAGRLEVALDLLEEISSSPSHAVSNKY---------------LYASLIENLSHASKVD 913
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+A+++++++ + V + LI GL K+ + + A +
Sbjct: 914 KALELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQL 953
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 56/263 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L+ ++ PN+VT+ ++I G G+I + LF+ + C PN IT
Sbjct: 734 IGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFIT 793
Query: 61 F---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----MMDQG 107
+ N L A L +EM + +++ II+G ++ ++D+
Sbjct: 794 YRVLINHCCSNGLLDEAYKLLDEMKQTYW---PKHILSHRKIIEGFSQEFITSIGLLDEL 850
Query: 108 MRPDVVTLN----VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ V ++ ++ DN K G++E A LLE + +P+ N
Sbjct: 851 SENESVPVDSLYRILIDNYIKAGRLEVALDLLEEI---SSSPSHAVSNK----------- 896
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
Y Y LI V+ A+ L M+S+ NV P+ +
Sbjct: 897 -----YLYASLIENLSHASKVDKALELYASMISK-----------------NVVPELSIL 934
Query: 224 TTYIDGLYKNGFVLEAMKVFSAI 246
I GL K EA+++ +I
Sbjct: 935 VHLIKGLIKVDKWQEALQLSDSI 957
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 146/328 (44%), Gaps = 65/328 (19%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNEF 79
TFN LI+GLC G+ +A L ++ F C+P+++T+NTL LN EM +
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV 267
Query: 80 --GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
G +C PDVVT T++I G C K GKM EA+ LL+
Sbjct: 268 KSGSVCSPDVVTYTSMISGYC-------------------------KAGKMREASSLLDD 302
Query: 138 MIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRN 183
M++ + P T+N L+DG+A S GC DV ++ LI+GYC+
Sbjct: 303 MLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQ 362
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
V L EM + G+ +A TY+ L +A ++ P +Y
Sbjct: 363 VSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP 422
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDG K G V EA + + KC T LI G C GR+ A IFH ++
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA-I 481
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGL 313
G +PD +T + ++ K G ++A L
Sbjct: 482 GCSPDKITVSSLLSCLLKAGMAKEAYHL 509
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 36/224 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+P++VT+ S+I G C G++ EA+ L + P +TFN L L A
Sbjct: 274 SPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEE 333
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTD 120
+ +M++ FG C PDVVT T++IDG C+ GF M +GM P+ T +++ +
Sbjct: 334 IRGKMIS-FG--CFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILIN 390
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + ++ +A LL + +D+ P YN ++DGF K C+
Sbjct: 391 ALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKP 450
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D ++ ILI G+C + +AVS+ +M++ G D T ++L
Sbjct: 451 DKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLL 494
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
D T N++ L GK E+A LL VM P+ TYNTL+ GF ++
Sbjct: 205 DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMF 264
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
C DV +Y +I+GYCK + +A SL +ML GI T+N L
Sbjct: 265 KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAK 324
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M PD +T+ IDG + G V + +++ + T
Sbjct: 325 AGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFT 384
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ LI+ LC RL A ++ L + + P YN +I GFCK G+ +AN ++ +M
Sbjct: 385 YSILINALCNENRLLKARELLGQL-ASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443
Query: 318 EETGLEPN 325
E+ +P+
Sbjct: 444 EKKKCKPD 451
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 97/231 (41%), Gaps = 33/231 (14%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+R T N++T +L K G + A + E M V+PN L+ FA KG H
Sbjct: 99 IRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFA--EKGKLHF 156
Query: 168 VYSY--------------NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ N L+N K VEDA+ L E L D T+N L
Sbjct: 157 ATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNIL---- 212
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I GL G +A+++ + C I T N LI G CK L
Sbjct: 213 -------------IRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNK 259
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A ++F + +PDVVTY MI G+CK G+ ++A+ LL DM G+ P
Sbjct: 260 ASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 30/206 (14%)
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKG-----CRHDVYSYNILINGYCKDRNVEDAVS 189
EV+ + D NP+ GF +W RH ++YN+L CK + A
Sbjct: 73 FEVVKKLDNNPHI--------GFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQ 124
Query: 190 LCREMLSEGI----------------RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
+ M S+G+ + L + V V + ++ L K
Sbjct: 125 MFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKL 184
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
V +AMK+F + +T N LI GLC +G+ + A ++ +M G PD+VT
Sbjct: 185 DRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLG-VMSGFGCEPDIVT 243
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEE 319
YN +I GFCK + KA+ + D++
Sbjct: 244 YNTLIQGFCKSNELNKASEMFKDVKS 269
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ S GF L + PN T++ LI LC E R+L+A L +L P
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFM 419
Query: 61 FNTLALVALNLF--EEMVNEFGVI--------CKPDVVTCTNIIDGLCKDGFMMDQ---- 106
+N + ++ F VNE VI CKPD +T T +I G C G M +
Sbjct: 420 YNPV----IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIF 475
Query: 107 ------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
G PD +T++ + L K G +EA L ++ + N
Sbjct: 476 HKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSN 519
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 152/358 (42%), Gaps = 60/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G + G+ EA L ++ C P+VI +N + AL
Sbjct: 336 PCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEEM + P++ T +ID LCK G M + G+ P+V+T+N+M D
Sbjct: 396 FEEMKKD----AAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDR 451
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
L K K++EA + E M + +P+ T+ +L+DG +G D Y
Sbjct: 452 LCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLG--KQGRVDDAYRLYEQMLDSDKI 509
Query: 171 -----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------L 209
Y LI + K ED + +EM+ G D N L
Sbjct: 510 PNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRAL 569
Query: 210 FMAINN--VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
F I + PD Y+ I GL K GF E ++F A+ CVL N IDG CK
Sbjct: 570 FEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCK 629
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A+ + M+ G P VVTY +I G K + +A L + + GLE N
Sbjct: 630 SGKVNKAYQLLEE-MKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELN 686
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 166/375 (44%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + + + PN++T N +I LC ++ EA +F+ +N C P+ +TF
Sbjct: 421 GEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTF 480
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
+L A L+E+M++ + P+ V T++I K DG
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKI---PNAVVYTSLIKSFFKCGRKEDGHKIFKE 537
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ +G PD+ LN D + K G+ + L E + R P+ +Y+ L+ G
Sbjct: 538 MIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGF 597
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A +GC D ++YN I+G+CK V A L EM ++G + TY +
Sbjct: 598 ARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGS 657
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + N + + +Y++ IDG K G + EA + +
Sbjct: 658 VIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 717
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T NCL+D L K + A F M+N TP+ +TY+I+I+G C+ + KA
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQN-MKNLKGTPNHITYSILINGLCRVRKFNKA 776
Query: 311 NGLLLDMEETGLEPN 325
+M++ GL+PN
Sbjct: 777 FVFWQEMQKQGLKPN 791
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 154/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L S PN V + SLIK GR + ++FK++ C P++
Sbjct: 491 GRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLL 550
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N LFEE + G I PDV++ + +I GL K GF
Sbjct: 551 NAYMDCVFKAGETGKGRALFEE-IKSRGFI--PDVMSYSILIHGLVKAGFARETYELFYA 607
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG D N D K GK+ +A LLE M + P TY +++DG A
Sbjct: 608 MKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDR 667
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 668 LDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 727
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F + N K T + LI+GLC++
Sbjct: 728 L-----------------LDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRV 770
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G K G +A+ L + G P+
Sbjct: 771 RKFNKAF-VFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPD 826
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 134/318 (42%), Gaps = 56/318 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L I F P++++++ LI GL G E LF + C + +
Sbjct: 561 GETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAY 620
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMM--- 104
NT A L EEM + +P VVT ++IDGL K + +M+
Sbjct: 621 NTFIDGFCKSGKVNKAYQLLEEMKTKGR---QPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
G+ +VV + + D K G+++EA ++E ++Q+ + PN T+N L+D
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 737
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + + +Y+ILING C+ R A +EM +G++ + TY
Sbjct: 738 INEALVCFQNMKNLKGTPNHI-TYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYT 796
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ + N PDS Y I+GL + +EA K+F
Sbjct: 797 TMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMK 856
Query: 250 KCVLTIETCNCLIDGLCK 267
C + +TC L+D L K
Sbjct: 857 GCNIHTKTCIALLDALQK 874
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 154/405 (38%), Gaps = 83/405 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + +C ++V +N I G++ A + F ++ P+ +T+
Sbjct: 247 GRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTY 306
Query: 62 NTLALV---------ALNLFEEMVNEFGVICK---------------------------- 84
++ V A+ +FE+M V C
Sbjct: 307 TSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKA 366
Query: 85 ----PDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
P V+ I+ L K G + M + P++ T NV+ D L K G++E A
Sbjct: 367 RGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAA 426
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHDVYSYNILING 177
+ + M + + PN T N ++D K C D ++ LI+G
Sbjct: 427 FKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDG 486
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
K V+DA L +ML +A Y +L M PD
Sbjct: 487 LGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPD 546
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ Y+D ++K G + +F I + + + + + LI GL K G + +++F+
Sbjct: 547 LRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFY 606
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M+ G D YN I GFCK G+ KA LL +M+ G +P
Sbjct: 607 A-MKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQP 650
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 137/369 (37%), Gaps = 60/369 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+LG + ++ F P+ T LI ++ E L + + F P + TL
Sbjct: 150 ILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALS 209
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+ + L LF +M E G + V T +I ++G M +
Sbjct: 210 SVQESDIMLTLFHQM-QELGY--EVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHA 266
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD--- 167
D+V NV D K GK++ A + + P+ TY +++ KG R D
Sbjct: 267 DIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLC---KGNRLDEAV 323
Query: 168 --------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
Y+YN +I GY ++A SL + G YN + +
Sbjct: 324 EIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383
Query: 214 -----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ P+ Y ID L K G V A KV A+ +
Sbjct: 384 GKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVM 443
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N +ID LCK +L A IF M + +PD VT+ +I G K+G+ A L
Sbjct: 444 TVNIMIDRLCKAKKLDEACSIFEG-MNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQ 502
Query: 317 MEETGLEPN 325
M ++ PN
Sbjct: 503 MLDSDKIPN 511
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 43/184 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++++ ++ TPN+ T+N L+ L I EA F+ + PN IT
Sbjct: 700 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHIT 759
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
++ L I+GLC+ F M QG++P
Sbjct: 760 YSIL-----------------------------INGLCRVRKFNKAFVFWQEMQKQGLKP 790
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+ +T M L+K G + EA+ L E P++ +YN +++G ++ R + +
Sbjct: 791 NTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSY----SRRAMEA 846
Query: 171 YNIL 174
Y I
Sbjct: 847 YKIF 850
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 172/352 (48%), Gaps = 57/352 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+PN+ T+N ++ GLC G EA +++++ P++IT+ T+ A
Sbjct: 262 SPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAAR 321
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
++ EM+ G++ PDVV +++ G C G M G+R +V + N+M
Sbjct: 322 VYSEMIKT-GLV--PDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLK 377
Query: 121 NLSKDGKMEEANCLLEVMIQRD-VNPNTCTYNTLM-----DGFAWWS---------KGCR 165
L G +++A L E++ + D ++P+ T++T++ GFA S G
Sbjct: 378 GLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKE 437
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D +SY+ +I+G CKD ++DAV L ++ + + ++ YN L
Sbjct: 438 LDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRV 497
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
MA N+ P + Y T I GL K LEA + + C+L + T LI GLC+
Sbjct: 498 YSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCR 557
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ A +++ ++ + GL DVV +NI+IHG C G+ +A+ LL +M+E
Sbjct: 558 DKKIDGALALWNQIL-DKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKE 608
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 49/338 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
P++V +NSL+KG C GR+ EA + + ++V NV ++N + L + ++
Sbjct: 331 LVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKAT 389
Query: 77 NEFGVICK-----PDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
+ + ++ K PD+VT + +I GLC+ GF G D + + M
Sbjct: 390 DLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISG 449
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L KDG++++A L E + PN+ YN L++GF SK C
Sbjct: 450 LCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPT 509
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+YN LI+G CK +A REML +G D TY +L I
Sbjct: 510 TITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSL-----------------I 552
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL ++ + A+ +++ I + + N LI GLC G++ A + + +
Sbjct: 553 RGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNC 612
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTYN ++ GF + G KA L + + E GL P+
Sbjct: 613 CPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPD 650
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L +I M F PN +N+LI G C + +A R++ ++ C P IT+
Sbjct: 454 GRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITY 513
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
NTL L A EM+ + C DV T ++I GLC+D
Sbjct: 514 NTLIHGLCKAEKYLEASRFTREMLEKG---CMLDVNTYGSLIRGLCRDKKIDGALALWNQ 570
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGF---- 157
++D+G++ DVV N++ L GK++EA+ LL M ++ + PN TYNTLMDGF
Sbjct: 571 ILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETG 630
Query: 158 ------AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ W G D+ SYN I G C + V L EML+ GI A T+N
Sbjct: 631 CFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWN 690
Query: 208 TLFMAINNVPP 218
L A+ P
Sbjct: 691 ILVRAVIKYGP 701
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 151/358 (42%), Gaps = 58/358 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALN 70
PN+ T+N +++ LC G + A LF L P+ IT++TL V AL
Sbjct: 156 APNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALY 215
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVMT 119
L +EM + +PD V ++ G ++G + D G P++ T NVM
Sbjct: 216 LLDEMPS---YEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVML 272
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D L K G +EA + E M+ + P+ TY T++ G + G
Sbjct: 273 DGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLV 332
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
DV YN L+ G+C V +A M GIR + T+YN + +
Sbjct: 333 PDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDL 391
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+++ PD ++T I GL + GF +++++ L + + +I GLC
Sbjct: 392 WELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLC 451
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
K GRL A ++ + + P+ YN +I+GFC+ + A + M E P
Sbjct: 452 KDGRLDDAVKLYEKISMD-SFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSP 508
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 121/274 (44%), Gaps = 56/274 (20%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMD-------QGMRPDV 112
AL F + + G C P V + ++D + D F + + P++
Sbjct: 102 AALAAFRRLPSFLG--CNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNL 159
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYN 172
T N+M +L G ++ A L + + R + P+ TY+TLM
Sbjct: 160 QTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLM------------------ 201
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+G+ K+ +++A+ L EM S ++ DA YN L + G ++
Sbjct: 202 ---SGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNAL-----------------LGGCFR 241
Query: 233 NGFVLEAMKVFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
NG +AM+V+ + + + T N ++DGLCK+G K A D++ ++ N PD+
Sbjct: 242 NGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVAN-NHQPDM 300
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TY MIHG C+ A + +M +TGL P+
Sbjct: 301 ITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPD 334
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 164/353 (46%), Gaps = 51/353 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN+ T+N L+K LC G++ A +L +++ C P+ +++ T+ + E+
Sbjct: 178 PNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREV 237
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
FG + V C +I GLC++G M+ G+ P+VV+ + + LS
Sbjct: 238 ARRFGA--EGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDV 295
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS----KGCRHDVYSY 171
G++E A +L MI+R PN T+++LM G+ W +G R +V Y
Sbjct: 296 GEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVY 355
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGI-RADATTYNTLF------------------MA 212
N L+NG C N+ +AV +C M + R + TTY+TL M
Sbjct: 356 NTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMV 415
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
V P+ VYT+ +D L KN +A ++ + C T+ T N I GLC GR+
Sbjct: 416 NCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVL 475
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + MQ G PD TYN ++ G + ++A L+ ++EE +E N
Sbjct: 476 WAMRVVDQ-MQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELN 527
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 161/373 (43%), Gaps = 55/373 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +LG+++ PN+ TF+SL+KG GR+ E L++ + + PNV+
Sbjct: 295 VGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVV 354
Query: 61 FNTL--ALVALNLFEEMVN-----EFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+NTL L E V+ E C+P+V T + ++ G K G M
Sbjct: 355 YNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKM 414
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----A 158
++ G+RP+VV M D L K+ ++A L++ M P T+NT + G
Sbjct: 415 VNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRV 474
Query: 159 WWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W+ GC D +YN L++G +++A L RE+ + + TYNT+
Sbjct: 475 LWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTV 534
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI--GNH 249
M +N V PD+ I K G V A++ I G
Sbjct: 535 MYGFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKE 594
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHM-LMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
C I + L+ G+C L I I ++ M N G+ P++ T+++++ GF K+ H
Sbjct: 595 LCPDIIAHTS-LLWGICN--SLGIEEAIVYLNKMLNKGIFPNIATWDVLVRGFFKKLGHM 651
Query: 309 KANGLLLDMEETG 321
+L D+ G
Sbjct: 652 GPIRILDDILGKG 664
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 139/315 (44%), Gaps = 44/315 (13%)
Query: 52 FCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
F C N + L AL +F + EFG CKP V +++D L +
Sbjct: 111 FICVLNSYKNSGLGDRALKMFYR-IKEFG--CKPTVKIYNHLLDALLGESGNKFHMIGAV 167
Query: 103 ---MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----- 154
M +GM P+V T NV+ L K+GK++ A LL M +R P+ +Y T++
Sbjct: 168 YENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCE 227
Query: 155 DGFAWWSK------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
DG ++ G V N LI G C++ V + L EM+ G+ + +Y++
Sbjct: 228 DGRVEEAREVARRFGAEGVVSVCNALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSS 287
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ +++V P+ H +++ + G + G V E + ++ +
Sbjct: 288 VISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEGVGLWRVMVLEG 347
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ N L++GLC G L A D+ + ++ P+V TY+ ++HGF K G Q A
Sbjct: 348 VRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGA 407
Query: 311 NGLLLDMEETGLEPN 325
+ + M G+ PN
Sbjct: 408 SEVWNKMVNCGVRPN 422
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
E L DA Y M I +P + ++ +G A+K+F I C
Sbjct: 81 EKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFGCK 140
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHML------MQNPGLTPDVVTYNIMIHGFCKEGQ 306
T++ N L+D L L + + FHM+ M+ G+ P+V TYN+++ CK G+
Sbjct: 141 PTVKIYNHLLDAL-----LGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGK 195
Query: 307 HQKANGLLLDMEETGLEPN 325
A LL++M + G P+
Sbjct: 196 LDGACKLLVEMSKRGCVPD 214
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 157/369 (42%), Gaps = 83/369 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ T+ +LI GLC G + A LF +++ PN +T+N L A V
Sbjct: 523 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 582
Query: 69 LNL------------FEEMVNEFGVICKP-----------------DVVTCTNIIDGLCK 99
LNL + EM+ + ++ P ++VT II G C
Sbjct: 583 LNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 642
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M D G +PD + + K KME A L M+ + PN T
Sbjct: 643 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVT 702
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y L+DG+ K GCR +V +YN+LI+G K N A LC+ M+
Sbjct: 703 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 762
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
EGI + T YT IDGL KNG A+++F+ + C+ +
Sbjct: 763 EEGIFPNVVT-----------------YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 805
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI L + G+++ A ++F L ++ GL PD +TY MI + G+ + A L
Sbjct: 806 LTYSSLIRALGQEGKVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSGKVEHAFNFLG 864
Query: 316 DMEETGLEP 324
M + G +P
Sbjct: 865 RMIKAGCQP 873
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------N 70
PN VT+++LI GLC GR+ EA L +++ + P T T ++AL
Sbjct: 453 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTC-TGPIIALCDMGCYEDAWR 511
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF +M N+ C+P+V T T +I GLC G M G+ P+ VT N + +
Sbjct: 512 LFVDMKNKG---CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 568
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
L ++ +++ A +L +M + + N TYN ++ G+ +G
Sbjct: 569 ILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 628
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
++ +YN +I GYC N A+ + M G + D +Y L
Sbjct: 629 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 688
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P+ YT IDG K+ + A + + C ++T N LI GL K
Sbjct: 689 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 748
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++++ G+ P+VVTY MI G CK G A + M E G PN
Sbjct: 749 NNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 804
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 160/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + ++ ++ S +P+ T+ S+I G C + + A ++F ++ C+PN +T+
Sbjct: 399 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 458
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF----- 102
+TL A +L EM+ G++ P TCT I LC +D +
Sbjct: 459 STLINGLCDSGRVNEAFDLIREMILH-GIL--PTAHTCTGPIIALCDMGCYEDAWRLFVD 515
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M ++G P+V T + L G ++ A L M + V PNT TYN L++
Sbjct: 516 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 575
Query: 156 -GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A+ G ++ +YN +I GYC + + A+ + ML G A+ TYNT
Sbjct: 576 IKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 635
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M PD YT I G K + A +F+ + +
Sbjct: 636 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 695
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T LIDG CK +L A + M+ G P+V TYN++IHG K+ A
Sbjct: 696 LCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPNVQTYNVLIHGLTKQNNFSGA 754
Query: 311 NGLLLDMEETGLEPN 325
L M E G+ PN
Sbjct: 755 EELCKVMIEEGIFPN 769
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
R+L PN++ +N++I LC +G + +A + KK+ P+ T+ ++ L
Sbjct: 375 RMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 434
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
AL +F +M E C+P+ VT + +I+GLC G M+ G+ P
Sbjct: 435 DLDSALQVFNQMAKEG---CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 491
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKG 163
T L G E+A L M + PN TY L+ G + +
Sbjct: 492 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 551
Query: 164 CRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
R V+ +YN LIN ++R ++ A + M G+ + TYN +
Sbjct: 552 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDP 611
Query: 211 ----MAINNVPPDSH-----VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
+ +NN+ H Y T I G +G A+++ + + C + L
Sbjct: 612 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 671
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G CKI +++ A+ +F+ ++ + GL P+ VTY +I G+CK+ + A LL M+ +G
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSG 730
Query: 322 LEPN 325
PN
Sbjct: 731 CRPN 734
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 148/383 (38%), Gaps = 80/383 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++ +L + N+VT+N++IKG C G A R+ + C P+ +
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 667
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A LF EMV++ +C P+ VT T +IDG CKD
Sbjct: 668 YTELICGFCKISKMESAFGLFNEMVDDG--LC-PNEVTYTALIDGYCKDEKLDTATSLLE 724
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M G RP+V T NV+ L+K A L +VMI+ + PN TY ++DG
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 784
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GC ++ +Y+ LI ++ VE+A +L E+ G+
Sbjct: 785 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL-------- 836
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL-- 265
PD Y I+ +G V A + C T+ T LI GL
Sbjct: 837 ---------IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 887
Query: 266 ------------------CKIGRLKIAWDIFHMLMQ-----NPGLTPDVVTYNIMIHGFC 302
C G D ++ +PGL+ V N ++
Sbjct: 888 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS--VQVQNALVSNLS 945
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
G+ +AN LL M GL P+
Sbjct: 946 TAGRWFEANELLGSMISQGLCPD 968
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 158/380 (41%), Gaps = 79/380 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ + F L ++ PN VT+ +LI G C + ++ A L + + C PNV T
Sbjct: 678 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 737
Query: 61 FNTL--ALVALNLF---EEMVN---EFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N L L N F EE+ E G+ P+VVT T +IDGLCK+G
Sbjct: 738 YNVLIHGLTKQNNFSGAEELCKVMIEEGIF--PNVVTYTAMIDGLCKNGSTSLALEMFNK 795
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++QG P+++T + + L ++GK+EEA L + + + P+ TY +++ + K
Sbjct: 796 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 855
Query: 163 --------------GCRHDVYSYNILING-----------------------YCKDRNVE 185
GC+ +++Y +LI G + +
Sbjct: 856 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQ 915
Query: 186 DAVSLCREMLSE-----------GIRADATTYNTLF--------MAINNVPPDSHVYTTY 226
DAVS+ L+E + ++ +T F M + PD Y +
Sbjct: 916 DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSL 975
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNP 285
+ L + V AM VF + C + + LI LC++ R K A F MLM+
Sbjct: 976 LCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT- 1034
Query: 286 GLTPDVVTYNIMIHGFCKEG 305
PD V ++I G ++G
Sbjct: 1035 -WNPDDVVQAVLIDGLLRDG 1053
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 157/369 (42%), Gaps = 83/369 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ T+ +LI GLC G + A LF +++ PN +T+N L A V
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412
Query: 69 LNL------------FEEMVNEFGVICKP-----------------DVVTCTNIIDGLCK 99
LNL + EM+ + ++ P ++VT II G C
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M D G +PD + + K KME A L M+ + PN T
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y L+DG+ K GCR +V +YN+LI+G K N A LC+ M+
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
EGI + T YT IDGL KNG A+++F+ + C+ +
Sbjct: 593 EEGIFPNVVT-----------------YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI L + G+++ A ++F L ++ GL PD +TY MI + G+ + A L
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694
Query: 316 DMEETGLEP 324
M + G +P
Sbjct: 695 RMIKAGCQP 703
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 157/357 (43%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------N 70
PN VT+++LI GLC GR+ EA L +++ + P T T ++AL
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTC-TGPIIALCDMGCYEDAWR 341
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF +M N+ C+P+V T T +I GLC G M G+ P+ VT N + +
Sbjct: 342 LFVDMKNKG---CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
L ++ +++ A +L +M + +PN TYN ++ G+ +G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
++ +YN +I GYC N A+ + M G + D +Y L
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P+ YT IDG K+ + A + + C ++T N LI GL K
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++++ G+ P+VVTY MI G CK G A + M E G PN
Sbjct: 579 NNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + ++ ++ S +P+ T+ S+I G C + + A ++F ++ C+PN +T+
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+TL A +L EM+ G++ P TCT I LC G
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILH-GIL--PTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M ++G P+V T + L G ++ A L M + V PNT TYN L++
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 156 -GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A+ GC ++ +YN +I GYC + + A+ + ML G A+ TYNT
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ I G +G A+++ + + C + LI G CKI
Sbjct: 466 I-----------------IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A+ +F+ ++ + GL P+ VTY +I G+CK+ + A LL M+ +G PN
Sbjct: 509 SKMESAFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 148/383 (38%), Gaps = 80/383 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++ +L + N+VT+N++IKG C G A R+ + C P+ +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A LF EMV++ +C P+ VT T +IDG CKD
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDG--LC-PNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M G RP+V T NV+ L+K A L +VMI+ + PN TY ++DG
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GC ++ +Y+ LI ++ VE+A +L E+ G+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL-------- 666
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL-- 265
PD Y I+ +G V A + C T+ T LI GL
Sbjct: 667 ---------IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Query: 266 ------------------CKIGRLKIAWDIFHMLMQ-----NPGLTPDVVTYNIMIHGFC 302
C G D ++ +PGL+ V N ++
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS--VQVQNALVSNLS 775
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
G+ +AN LL M GL P+
Sbjct: 776 TAGRWFEANELLGSMISQGLCPD 798
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 79/380 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ + F L ++ PN VT+ +LI G C + ++ A L + + C PNV T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567
Query: 61 FNTL--ALVALNLF---EEMVN---EFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N L L N F EE+ E G+ P+VVT T +IDGLCK+G
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIF--PNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++QG P+++T + + L ++GK+EEA L + + + P+ TY +++ + K
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 163 --------------GCRHDVYSYNILING-----YCKDRNV------------------E 185
GC+ +++Y +LI G D+ + +
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQ 745
Query: 186 DAVSLCREMLSE-----------GIRADATTYNTLF--------MAINNVPPDSHVYTTY 226
DAVS+ L+E + ++ +T F M + PD Y +
Sbjct: 746 DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSL 805
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNP 285
+ L + V AM VF + C + + LI LC++ R K A F +MLM+
Sbjct: 806 LCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT- 864
Query: 286 GLTPDVVTYNIMIHGFCKEG 305
PD V ++I G ++G
Sbjct: 865 -WNPDDVVQAVLIDGLLRDG 883
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ +G++P+++ N + + L KDG + +A +++ + + +++P+T TY +++ G
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265
Query: 157 -------FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F +K GC + +Y+ LING C V +A L REM+ GI
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL-------- 317
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P +H T I L G +A ++F + N C + T LI GLC
Sbjct: 318 ---------PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G LK+A +FH M G+ P+ VTYN +I+ + + + A +L M G PN
Sbjct: 369 GLLKVAIGLFHR-MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 149/323 (46%), Gaps = 53/323 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN-------L 71
P+ TFN LI+GLC G + A +FK + F C P+V+T+NTL L N L
Sbjct: 176 PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCEL 235
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
F+E+ + C PD+VT T+II G CK G MM G++P+V+T NV+ D
Sbjct: 236 FKEIQSRSD--CSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDG 293
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGCRHD 167
K G + EA + M D + + T+ +L+DG+ +W ++
Sbjct: 294 FGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPT 353
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
VY+Y +LIN CK+ + +A R+ L + + +++ P +Y I
Sbjct: 354 VYTYAVLINALCKENRLNEA----RDFLGQ-------------IKNSSIIPKPFMYNPVI 396
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K G V E + + +C T LI G C GR+ A +IF+ ++
Sbjct: 397 DGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT-RC 455
Query: 288 TPDVVTYNIMIHGFCKEGQHQKA 310
PD +T N +I K G +A
Sbjct: 456 APDNITVNSLISCLLKAGMPNEA 478
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 139/329 (42%), Gaps = 72/329 (21%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N +N+L+ L + ++ EA LFK+ V P+ TFN L
Sbjct: 142 NSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNIL----------------- 184
Query: 82 ICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
I GLC+ G M G PDVVT N + + L K +++
Sbjct: 185 ------------IRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRG 232
Query: 132 NCLL-EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILIN 176
L E+ + D +P+ TY +++ GF K G + +V ++N+LI+
Sbjct: 233 CELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLID 292
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ K N+ +A ++ R+M AD T+ +L IDG + G V
Sbjct: 293 GFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSL-----------------IDGYCRAGQV 335
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+K ++ + T+ T LI+ LCK RL A D F ++N + P YN
Sbjct: 336 NHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARD-FLGQIKNSSIIPKPFMYNP 394
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I GFCK G + N +L +MEE +P+
Sbjct: 395 VIDGFCKAGNVDEGNVILKEMEEKRCDPD 423
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 54/284 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
+P++VT+ S+I G C G++ EA+ LF+++ PNVITFN L + + E
Sbjct: 246 SPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEA 305
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
M + C DVVT T++IDG C+ G M + + P V T V+ + L
Sbjct: 306 MYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALC 365
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
K+ ++ EA L + + P YN ++DGF CK N
Sbjct: 366 KENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGF---------------------CKAGN 404
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
V++ + +EM E R D PD +T I G G + EA+ +F
Sbjct: 405 VDEGNVILKEM--EEKRCD---------------PDKVTFTILIIGHCVKGRMFEAINIF 447
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+ + +C T N LI L K G A+ I M +++ L
Sbjct: 448 NRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIRKMALEDRNL 491
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
K R + + YN L++ K V +A+ L +E L + PPD+
Sbjct: 137 KEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYL-----------------VMQSPPDTW 179
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ I GL + G V A +VF + + C+ + T N LI+GLCK ++ ++F +
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEI 239
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+PD+VTY +I GFCK G+ ++A+ L +M +G++PN
Sbjct: 240 QSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPN 283
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G V+L + P+ VTF LI G C +GR+ EA +F ++ C P+ IT
Sbjct: 403 GNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITV 462
Query: 62 NTL 64
N+L
Sbjct: 463 NSL 465
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 157/369 (42%), Gaps = 83/369 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ T+ +LI GLC G + A LF +++ PN +T+N L A V
Sbjct: 353 PNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412
Query: 69 LNL------------FEEMVNEFGVICKP-----------------DVVTCTNIIDGLCK 99
LNL + EM+ + ++ P ++VT II G C
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M D G +PD + + K KME A L M+ + PN T
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y L+DG+ K GCR +V +YN+LI+G K N A LC+ M+
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
EGI + T YT IDGL KNG A+++F+ + C+ +
Sbjct: 593 EEGIFPNVVT-----------------YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI L + G+++ A ++F L ++ GL PD +TY MI + G+ + A L
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694
Query: 316 DMEETGLEP 324
M + G +P
Sbjct: 695 RMIKAGCQP 703
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 157/357 (43%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------N 70
PN VT+++LI GLC GR+ EA L +++ + P T T ++AL
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTC-TGPIIALCDMGCYEDAWR 341
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF +M N+ C+P+V T T +I GLC G M G+ P+ VT N + +
Sbjct: 342 LFVDMKNKG---CEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALIN 398
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
L ++ +++ A +L +M + +PN TYN ++ G+ +G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
++ +YN +I GYC N A+ + M G + D +Y L
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P+ YT IDG K+ + A + + C ++T N LI GL K
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++++ G+ P+VVTY MI G CK G A + M E G PN
Sbjct: 579 NNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + ++ ++ S +P+ T+ S+I G C + + A ++F ++ C+PN +T+
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+TL A +L EM+ G++ P TCT I LC G
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILH-GIL--PTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M ++G P+V T + L G ++ A L M + V PNT TYN L++
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 156 -GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A+ GC ++ +YN +I GYC + + A+ + ML G A+ TYNT
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ I G +G A+++ + + C + LI G CKI
Sbjct: 466 I-----------------IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKI 508
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A+ +F+ ++ + GL P+ VTY +I G+CK+ + A LL M+ +G PN
Sbjct: 509 SKMESAFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 148/383 (38%), Gaps = 80/383 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++ +L + N+VT+N++IKG C G A R+ + C P+ +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A LF EMV++ +C P+ VT T +IDG CKD
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDG--LC-PNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M G RP+V T NV+ L+K A L +VMI+ + PN TY ++DG
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GC ++ +Y+ LI ++ VE+A +L E+ G+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL-------- 666
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL-- 265
PD Y I+ +G V A + C T+ T LI GL
Sbjct: 667 ---------IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Query: 266 ------------------CKIGRLKIAWDIFHMLMQ-----NPGLTPDVVTYNIMIHGFC 302
C G D ++ +PGL+ V N ++
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS--VQVQNALVSNLS 775
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
G+ +AN LL M GL P+
Sbjct: 776 TAGRWFEANELLGSMISQGLCPD 798
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 79/380 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ + F L ++ PN VT+ +LI G C + ++ A L + + C PNV T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567
Query: 61 FNTL--ALVALNLF---EEMVN---EFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N L L N F EE+ E G+ P+VVT T +IDGLCK+G
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIF--PNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++QG P+++T + + L ++GK+EEA L + + + P+ TY +++ + K
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 163 --------------GCRHDVYSYNILING-----YCKDRNV------------------E 185
GC+ +++Y +LI G D+ + +
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQ 745
Query: 186 DAVSLCREMLSE-----------GIRADATTYNTLF--------MAINNVPPDSHVYTTY 226
DAVS+ L+E + ++ +T F M + PD Y +
Sbjct: 746 DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSL 805
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNP 285
+ L + V AM VF + C + + LI LC++ R K A F +MLM+
Sbjct: 806 LCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT- 864
Query: 286 GLTPDVVTYNIMIHGFCKEG 305
PD V ++I G ++G
Sbjct: 865 -WNPDDVVQAVLIDGLLRDG 883
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ +G++P+++ N + + L KDG + +A +++ + + +++P+T TY +++ G
Sbjct: 206 MLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHD 265
Query: 157 -------FAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F +K GC + +Y+ LING C V +A L REM+ GI
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGIL-------- 317
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P +H T I L G +A ++F + N C + T LI GLC
Sbjct: 318 ---------PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVS 368
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G LK+A +FH M G+ P+ VTYN +I+ + + + A +L M G PN
Sbjct: 369 GLLKVAIGLFHR-MSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 171/392 (43%), Gaps = 89/392 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++L PN++T+N L+ GLC GR+ E A + ++ P+ T+
Sbjct: 237 GDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTY 296
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
+ L + L+LFEE V + GV K TC+ +++GLCKDG
Sbjct: 297 SILFDGHSRTGDSQTMLSLFEESVKK-GV--KIGAYTCSILLNGLCKDGKISKAEEVLQT 353
Query: 102 -----------------------------FMMDQGM-----RPDVVTLNVMTDNLSKDGK 127
F + Q M RPD +T N + + L K +
Sbjct: 354 LVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVER 413
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNI 173
+ EA+ L+ M + VNP+ T+NTL+D + KG + +V SY
Sbjct: 414 ITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGS 473
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
++N +CK+ + +AV++ +M I +V P + VY ID +
Sbjct: 474 IVNAFCKNGKILEAVAILDDMF-----------------IKDVLPGAQVYNAIIDAYIEC 516
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G +A + + + +I T N LI GLCK ++ A ++ L +N GL PDV++
Sbjct: 517 GSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSL-RNYGLAPDVIS 575
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I C +A L +M + G++P+
Sbjct: 576 YNTLISACCYRSNTDRALELEKEMWKCGIKPS 607
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 164/367 (44%), Gaps = 65/367 (17%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD----PNVITF 61
G F LL + + P+ T+N ++ G + EA + +++ CD PN ++
Sbjct: 138 GAFELL---VAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMG---CDGAPAPNAFSY 191
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + A+ LF+EM + V P+ +T +IDG K G
Sbjct: 192 NVVIAGLWKAGTDCDAVKLFDEMPEKAVV---PNHITYNTMIDGHIKKGDLESGFRLWSQ 248
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M+ G++P+V+T NV+ L + G+M E +L+ M R + P+ TY+ L DG +
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGD 308
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG + Y+ +IL+NG CKD + A + + +++ G+ YNT
Sbjct: 309 SQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNT 368
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD Y I+GL K + EA + + +
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNG 428
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ET N LID + G+L+ + I MQ GL P+VV+Y +++ FCK G+ +A
Sbjct: 429 VNPSVETFNTLIDAYGRAGQLEKCFIILSD-MQEKGLKPNVVSYGSIVNAFCKNGKILEA 487
Query: 311 NGLLLDM 317
+L DM
Sbjct: 488 VAILDDM 494
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 51/336 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G G F + ++ P+ +T+N+LI GL RI EA L ++ +P+V T
Sbjct: 376 IGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVET 435
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
FNTL ++ +G + + C I+ M ++G++P+VV+ + +
Sbjct: 436 FNTL-----------IDAYGRAGQ--LEKCFIILSD------MQEKGLKPNVVSYGSIVN 476
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K+GK+ EA +L+ M +DV P YN ++D + S G
Sbjct: 477 AFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPP 536
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ +YN+LI G CK + +A L + + G+ D +YNTL A Y +
Sbjct: 537 SIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISAC--------CYRSN 588
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
D A+++ + + T L L GR+ +++ ++ +
Sbjct: 589 TD---------RALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQML-DKD 638
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ P YNIM+ + K G+ K L +M + G+
Sbjct: 639 VVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGI 674
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 100/268 (37%), Gaps = 69/268 (25%)
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM---------------------------DGFA 158
G+ + E+++ P+T T+N + + F+
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190
Query: 159 W-------WSKGCRHDVY----------------SYNILINGYCKDRNVEDAVSLCREML 195
+ W G D +YN +I+G+ K ++E L +ML
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250
Query: 196 SEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVL 237
G++ + TYN L MA + PD Y+ DG + G
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQ 310
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+ +F + TC+ L++GLCK G++ A ++ L+ N GL V YN +
Sbjct: 311 TMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLV-NSGLLQTTVIYNTL 369
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+G+C+ G + A + M+ + P+
Sbjct: 370 INGYCQIGDLEGAFSIFQQMKSRLIRPD 397
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 174/422 (41%), Gaps = 111/422 (26%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------L 64
++++ +P T N LI GLC GR +A +F K+ V C PN +F L
Sbjct: 142 MVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGL 201
Query: 65 ALVALNLFEEMVNEFGV-------------ICK--------------------PDVVTCT 91
++ AL L + M FGV C+ PDVVT
Sbjct: 202 SMRALELLDGM-GSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFN 260
Query: 92 NIIDGLCKDGFMMDQGM--------------RPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
+ I LC G +++ RP++ T N+M + K+G +EEA L+E
Sbjct: 261 SRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVES 320
Query: 138 MIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRN 183
M + +YN + G KG ++YS+N +++G CK+
Sbjct: 321 MKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGL 380
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF---------MAINNV---------PPDSHVYTT 225
+ DA + M+S GI D TY+TL + NN+ P+++
Sbjct: 381 ISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNI 440
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML---- 281
+ L+K G + EA K+ + L TCN +IDGLCK G+L A +I +
Sbjct: 441 LLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHG 500
Query: 282 ---MQNPGLT---------------PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ N G + PD++TY+I+I+G CK G+ +A ++M L
Sbjct: 501 SAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLH 560
Query: 324 PN 325
P+
Sbjct: 561 PD 562
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 174/381 (45%), Gaps = 83/381 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPN 57
GR L+ R+ P++VTFNS I LC+ G+ILEA+R+F+ + + PN
Sbjct: 235 GRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPN 294
Query: 58 VITFNTLALVALNLF--EEMVNEFGVICKP--------DVVTCTNIIDGLCKDGF----- 102
+ TFN + L F E M+ E + + ++ + + GL ++G
Sbjct: 295 ITTFNLM----LEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQ 350
Query: 103 -----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG- 156
M+D+G+ P++ + N + D L K+G + +A ++ +MI + P+T TY+TL+ G
Sbjct: 351 LALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGC 410
Query: 157 -------------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
+GC + Y+ NIL++ K+ + +A L ++M D
Sbjct: 411 CSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDN 470
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------SAIGN------- 248
T N + IDGL K+G + EA+++ +A+GN
Sbjct: 471 VTCNIV-----------------IDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIG 513
Query: 249 --------HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
KC+ + T + +I+GLCK GRL A F + M L PD + Y+ IH
Sbjct: 514 LVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKF-IEMVGKSLHPDSIIYDTFIHS 572
Query: 301 FCKEGQHQKANGLLLDMEETG 321
FCK G+ A +L DME+ G
Sbjct: 573 FCKHGKISSAFRVLKDMEKRG 593
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 161/379 (42%), Gaps = 74/379 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV- 76
+PN T N L+ L EGRI EA +L +K+N D + +T N + L +E V
Sbjct: 432 SPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVE 491
Query: 77 -----------------NEF---------GVICKPDVVTCTNIIDGLCKDGF-------- 102
N F G C PD++T + II+GLCK G
Sbjct: 492 IVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKF 551
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-- 158
M+ + + PD + + + K GK+ A +L+ M +R N + TYN+L+ G
Sbjct: 552 IEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSK 611
Query: 159 ------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
KG ++ +YN +I+ C+ ++DA SL EML +GI + +++
Sbjct: 612 NQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSF 671
Query: 207 NTLF-----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +A++ +Y+ + L G V EA ++F A +
Sbjct: 672 RLLIKAFCKASDFGVVKEVFEIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDR 731
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
L N LI+ LCK L+ A DI H ++ + G D ++ +I G K G+
Sbjct: 732 CFDLGNFQYNDLIEKLCKDEMLENASDILHKMI-DKGYRFDPASFMPVIDGLGKRGKKHD 790
Query: 310 ANGL---LLDMEETGLEPN 325
A+ L ++DM G+ N
Sbjct: 791 ADELAERMMDMASEGMVEN 809
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 171/368 (46%), Gaps = 57/368 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L ++ + F N ++N LI L G EA +++++ P++ T++ L +VAL
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL-MVAL 237
Query: 70 N----------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
L +EM + G+ +P+V T T I L + G M D+G
Sbjct: 238 GKKRDSEMVMVLLKEM-EDLGL--RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCG 294
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AW 159
PD+VT V+ D L G++E A L M P+ Y TL+D F +
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
WS+ G DV ++ IL++ CK R+ ++A + M +GI + TYNTL
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M V P ++ Y T+ID K+G +A++ F + V I
Sbjct: 415 AGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
CN + L ++GRL+ A +F+ L +N GL PD VTYN+M+ + K GQ +A LL +M
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLREN-GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533
Query: 318 EETGLEPN 325
G EP+
Sbjct: 534 IRNGCEPD 541
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 151/337 (44%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++VT+ LI LC G++ A LF K+ P+ + + TL L+ F N+FG
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITL----LDKF----NDFG 346
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
D+ T + DG+M PDVVT ++ D L K +EA +VM +
Sbjct: 347 -----DLDTFKEFWSQMEADGYM------PDVVTFTILVDVLCKARDFDEAFATFDVMRK 395
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ + PN TYNTL+ G S G + Y+Y I+ + K
Sbjct: 396 QGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGK 455
Query: 187 AVSLCREMLSEGI-----RADATTYN-----------TLFMAI--NNVPPDSHVYTTYID 228
AV +M ++GI +A+ Y+ T+F + N + PDS Y +
Sbjct: 456 AVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMK 515
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K G V EA+ + S + + C + N LID L K GR+ AW +F M++ L+
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR-MKDMKLS 574
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTYN ++ G KEG+ QKA L M PN
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPN 611
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 145/343 (42%), Gaps = 62/343 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LN 70
+P + ++N LI L +A LFK + C P+ TFN L V
Sbjct: 785 SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVVTLNVMTD 120
L++EM++ CKPD +T +I L K D F ++ RP T + D
Sbjct: 845 LYKEMISR---RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L+K G++EEA L E M GC+ + +NILINGY K
Sbjct: 902 GLAKVGRLEEAMRLFEEM---------------------SDYGCKPNCAIFNILINGYGK 940
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+ E A L + M++EGIR D +Y L + + PD
Sbjct: 941 IGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIA 1000
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I+GL K+ + EA+ +++ + N V + T N L+ L G ++ A ++ L
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL- 1059
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q GL PDV TYN +I G+ + A + +M G PN
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 164/411 (39%), Gaps = 91/411 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + R+ +P +VT+N+L+ GL EGR+ +A LF+ + C PN I+F
Sbjct: 556 GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISF 615
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
NTL +AL +F +M + CKPDV+T +I GL K+
Sbjct: 616 NTLLDCFCKNDEVELALKMFSKMTV---MDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
+ + M PD VT+ + L K G++ +A + + M Q N + LM G A
Sbjct: 673 LKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAE 732
Query: 160 WSKG------------CRHDVY-----------------------------------SYN 172
K CR D + SYN
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LI + E A L ++M + G DA T+N L M
Sbjct: 793 CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD+ Y I L K+ + +A+ F + + T T LIDGL K+GRL+ A
Sbjct: 853 RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M + G P+ +NI+I+G+ K G + A L M G+ P+
Sbjct: 913 MRLFEE-MSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
++ S F P T+ LI GL GR+ EA RLF++++ + C PN FN L
Sbjct: 884 LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
A LF+ MVNE G+ +PD+ + T ++D LC G + G+ PD +
Sbjct: 944 TETACQLFKRMVNE-GI--RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIA 1000
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWSK------- 162
N + + L K +MEEA L M R + P+ TYN+LM G +K
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G DV++YN LI GY N E A ++ + M+ +G + TY L
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 146/369 (39%), Gaps = 75/369 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + + + P+ VT+N ++K G++ EA L ++ C+P+VI
Sbjct: 485 MGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIV 544
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
N+L ID L K G M D + P
Sbjct: 545 VNSL-----------------------------IDSLYKAGRVDEAWQMFDRMKDMKLSP 575
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW 160
VVT N + L K+G++++A L E MI + +PNT ++NTL+D F +
Sbjct: 576 TVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMF 635
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SK C+ DV +YN +I G K+ V A + L + + D T TL +
Sbjct: 636 SKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ-LKKSMHPDHVTICTLLPGLVKC 694
Query: 217 PPDSHVYTTYIDGLYK--------------NGFVLEAMKVFSAIGNHKCVLTIETCN--- 259
+ D +Y+ G ++EA + I + VL C
Sbjct: 695 GQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLN-GICREDS 753
Query: 260 ---CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
L+ LCK R A+ IF + G++P + +YN +I + +KA L D
Sbjct: 754 FLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKD 813
Query: 317 MEETGLEPN 325
M+ G P+
Sbjct: 814 MKNVGCAPD 822
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------- 166
T N M + L K+E+ + E M ++ + + TY T+ + G R
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRG-GLRQMTTVLNK 182
Query: 167 --------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ YSYN LI+ + +A+ + R M+SEG++ TY+ L +A+
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGK-KR 241
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS + V+ +K +G V T C I L + G++ A++IF
Sbjct: 242 DSEM-------------VMVLLKEMEDLGLRPNVYTFTIC---IRVLGRAGKIDEAYEIF 285
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD+VTY ++I C GQ + A L + M+ G +P+
Sbjct: 286 RR-MDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 165/376 (43%), Gaps = 55/376 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF-KKLNVFCCDPNVITF 61
R + GF L GR L + +++ + L+K L R + L ++ +P+ I++
Sbjct: 134 RPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISY 193
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ + AL+L MV + G C P+VVT +I GL ++G
Sbjct: 194 NTVVKTLCEDSRSQRALDLLHTMVKKSGG-CSPNVVTYNTVIHGLFREGEVSKACNLFHE 252
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
MM QG+ PDVVT + D L K M++A +L MI PN TYN ++ G++
Sbjct: 253 MMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQ 312
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W S+G ++ + N ++ CK ++A M ++G + + TY+
Sbjct: 313 WKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSV 372
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M N + D V+ ID K G + E M +F+ +
Sbjct: 373 LLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQG 432
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I ++GRL A D F+ ++ GL P+ + Y+ +I GFC G KA
Sbjct: 433 VIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAM-GLKPEGIVYHSLIQGFCMHGNLVKA 491
Query: 311 NGLLLDMEETGL-EPN 325
L+ +M G+ PN
Sbjct: 492 KELVSEMMSRGIPRPN 507
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 152/338 (44%), Gaps = 53/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ T+ +I GR+ +A F ++ P I +++L + A L
Sbjct: 435 PDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKEL 494
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EM++ I +P++V +II+ LCK+G F++ G RPDV+T N + D
Sbjct: 495 VSEMMSRG--IPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDG 552
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
GK+E+A +L+ MI + P+ +YNTL+DG+ SKG +
Sbjct: 553 YGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPT 612
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y I+++G D A +C EM+ G D +T + +
Sbjct: 613 TITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGII-----------------L 655
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL +N EA+ +F +G I N +ID + K+ + + A ++F + GL
Sbjct: 656 GGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISAT-GL 714
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ TY +MI KEG ++A+ + ME++G P+
Sbjct: 715 VPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPS 752
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 164/394 (41%), Gaps = 94/394 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L ++ P++VT+ S+I LC + +A + +++ PN +T+
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTY 300
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N + +F EM ++ G++ P++VTC + + LCK G
Sbjct: 301 NCMIHGYSISGQWKETAGMFREMTSQ-GLM--PNIVTCNSYMSSLCKHGKSKEAAEFFDS 357
Query: 103 MMDQGMRPDVVT-----------------------------------LNVMTDNLSKDGK 127
M +G +P++VT N++ D K G
Sbjct: 358 MAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGM 417
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
M+E + M ++ V P+ CTY ++ F+ + G + + Y+
Sbjct: 418 MDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHS 477
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI G+C N+ A L EM+S GI P+ + + I+ L K
Sbjct: 478 LIQGFCMHGNLVKAKELVSEMMSRGIPR----------------PNIVFFNSIINSLCKE 521
Query: 234 GFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G V+EA +F IG V+T N LIDG +G+++ A+ + ++ + G+ PD
Sbjct: 522 GRVVEAHDIFDFVIHIGERPDVITF---NSLIDGYGLVGKIEKAFGVLDAMI-SAGIEPD 577
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
VV+YN +I G+C+ G+ L +M G++P
Sbjct: 578 VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKP 611
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 145 PNTCTYNTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSL 190
P CTYN LMD GFA + + G + DV +IL+ + +D V+L
Sbjct: 117 PTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNL 176
Query: 191 CREMLSE-GIRADATTYNTLFMAI--------------------NNVPPDSHVYTTYIDG 229
+ E G+ D +YNT+ + P+ Y T I G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L++ G V +A +F + V + T +ID LCK + A + ++ N G P
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISN-GFQP 295
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ VTYN MIHG+ GQ ++ G+ +M GL PN
Sbjct: 296 NKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPN 331
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F +L ++ + P++V++N+LI G C GRI + LF ++ P IT
Sbjct: 556 VGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTIT 615
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQ 106
+ + + A + EM+ + D+ TC I+ GLC+ + M +
Sbjct: 616 YGIILHGLFNDGRTVGAKKMCHEMIESGTTM---DISTCGIILGGLCRNNCDDEAIAMFK 672
Query: 107 GM-----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
+ + ++ +N M D + K K EEA L + + + PN TY ++
Sbjct: 673 KLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMI 725
>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 73/345 (21%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
GF +L +++ P++V F +LI GLC G+ +A LF + T+
Sbjct: 139 GFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDE--------------TVER 184
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
+L + N C+ + M + PD+VT NV+ D K+G
Sbjct: 185 GYNSLIHGLCN------------CSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEG 232
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYN 172
K+ EA +L+ M + V + TYN+LM G + W +KGC+ +V+SYN
Sbjct: 233 KVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYN 292
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------MAINNV 216
ILINGYCK +++A L EM+ +G+ + +YNT M N
Sbjct: 293 ILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYNTHGFCQLGKLREAQELNENMHTNGN 352
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y+ +DG K G + A K+FS + + GL ++ L A +
Sbjct: 353 LPDLCTYSILLDGFCKQGNHIAARKLFSEL--------------FVQGLQRL--LDEALE 396
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
F M+ G P+ +YN++I GF + +A L+ +M + G
Sbjct: 397 TFRK-MEEDGCPPNEWSYNVIIRGFLRHRDESRAVQLIGEMRDRG 440
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 42/249 (16%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKG 163
G++PDVV + + L K GK +A L + ++R YN+L+ G + W +
Sbjct: 150 GLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERG-------YNSLIHGLCNCSQWKEA 202
Query: 164 CR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
D+ ++N+L++ +CK+ V +A + + M + D TYN+L
Sbjct: 203 SAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTEMSVELDVVTYNSLMYG 262
Query: 210 ---------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
FM P+ Y I+G K + EA ++F+ + +
Sbjct: 263 HSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPN 322
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I + N G C++G+L+ A ++ + N L PD+ TY+I++ GFCK+G H A L
Sbjct: 323 IVSYN--THGFCQLGKLREAQELNENMHTNGNL-PDLCTYSILLDGFCKQGNHIAARKLF 379
Query: 315 LDMEETGLE 323
++ GL+
Sbjct: 380 SELFVQGLQ 388
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 27/162 (16%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + Y+ NILIN +CK ++V+ S+ +++ G++ D VP
Sbjct: 115 GLSPNTYTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDV------------VP----- 157
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET-CNCLIDGLCKIGRLKIAWDIFHML 281
+TT I+GL K G +A+++F T+E N LI GLC + K A I +
Sbjct: 158 FTTLINGLCKVGKFSQAVELFDE--------TVERGYNSLIHGLCNCSQWKEASAILNE- 208
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
M + + PD+VT+N+++ FCKEG+ +A G+L M E +E
Sbjct: 209 MTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTEMSVE 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 25/226 (11%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G+ P+ TLN++ + K ++ +L +I+ + P+ + TL++G K +
Sbjct: 115 GLSPNTYTLNILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQA 174
Query: 167 -DVYS------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+++ YN LI+G C ++A ++ EM S I D T+N L
Sbjct: 175 VELFDETVERGYNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVL---------- 224
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+D K G V EA V + L + T N L+ G + A +F
Sbjct: 225 -------VDTFCKEGKVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFG 277
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G P+V +YNI+I+G+CK +A L +M GL PN
Sbjct: 278 FMI-TKGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPN 322
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 161/363 (44%), Gaps = 65/363 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R LL ++ + P++ +N LI GLC ++ EA L + PN T+
Sbjct: 500 SRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
VA F++M++ G++ P+ V T +I G C G
Sbjct: 560 GAFINLYSKSGEIQVAERYFKDMLSS-GIV--PNNVIYTILIKGHCDVGNTVEALSTFKC 616
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G+ PD+ + + +LSK+GK +EA + ++ V P
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVP----------------- 659
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
DV+ YN LI+G+CK+ ++E A L EML GI + YNTL
Sbjct: 660 ----DVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLT 715
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + PD ++Y IDG K G + +A+ +F K V ++ N LI
Sbjct: 716 EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE-AQQKSVGSLSAFNSLI 774
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
D CK G++ A ++F M + LTP++VTY I+I + K ++A L LDME +
Sbjct: 775 DSFCKHGKVIEARELFDD-MVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNI 833
Query: 323 EPN 325
PN
Sbjct: 834 IPN 836
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 176/444 (39%), Gaps = 129/444 (29%)
Query: 7 GFVLLGRILMSCF----TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
G V+ G++++S PN+ T+N+ I GLC G + EA + K + P+ T+
Sbjct: 256 GDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYT 315
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
L + A +FE M + G+ P+ T T +IDG K+G M
Sbjct: 316 LLVDGFCKQKRSKEAKLIFESMPSS-GL--NPNRFTYTALIDGFIKEGNIEEALRIKDEM 372
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ +G++ +VVT N M ++K G+M +A L M+ + P+T TYN L+DG+
Sbjct: 373 ITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDM 432
Query: 158 -------------------------------------------AWWSKGCRHDVYSYNIL 174
G + +V+ Y L
Sbjct: 433 AKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTL 492
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------NNV 216
I Y ++ E A+ L + M++ G+ D YN L + + +
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGI 552
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFS-----------------------------AIG 247
P++H Y +I+ K+G + A + F A+
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612
Query: 248 NHKCVLT------IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
KC+L I + +I L K G+ K A +F ++ G+ PDV YN +I GF
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT-GVVPDVFLYNSLISGF 671
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CKEG +KA+ L +M G+ PN
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPN 695
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 137/282 (48%), Gaps = 42/282 (14%)
Query: 85 PDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
PDV T TN+I CK G + M++ +P++ T N L + G ++EA +
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299
Query: 136 EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKD 181
++M+++ + P+ TY L+DGF + S G + ++Y LI+G+ K+
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E+A+ + EM++ G++ + TYN + M + + PD+ Y
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTY 419
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG K+ + +A ++ + + K + T + LI GLC L+ A ++ +++
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G+ P+V Y +I + +E +++ A LL M G+ P+
Sbjct: 480 N-GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPD 520
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 146/347 (42%), Gaps = 58/347 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN T+ + I G I A R FK + PN + + L + AL+
Sbjct: 554 PNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALST 613
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FM--MDQGMRPDVVTLNVMTDN 121
F+ M+ E G+I PD+ + II L K+G F+ + G+ PDV N +
Sbjct: 614 FKCML-EKGLI--PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----------------WSKGCR 165
K+G +E+A+ L + M+ +NPN YNTL++ + + SKG
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGIS 730
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D Y Y ILI+G K+ N+E A+SL E + + + +N+L
Sbjct: 731 PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEAREL 789
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+ YT ID K + EA ++F + + T L+ +
Sbjct: 790 FDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQ 849
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
IG +F M+ G+ D + Y +M +CKEG+ +A LL
Sbjct: 850 IGNRFKMISLFKD-MEARGIACDAIAYGVMASAYCKEGKSLEALKLL 895
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 84/354 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + L + P++ +NSLI G C EG I +A++L+ ++ +PN++ +
Sbjct: 640 GKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVY 699
Query: 62 NTLA-----------LVALNLFEEMVNE----------------------------FGVI 82
NTL A LF+EM+++ F
Sbjct: 700 NTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEA 759
Query: 83 CKPDVVTCT---NIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
+ V + + ++ID CK G M+D+ + P++VT ++ D K ME
Sbjct: 760 QQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMME 819
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILI 175
EA L M R++ PNT TY +L+ + ++G D +Y ++
Sbjct: 820 EAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMA 879
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ YCK+ +A+ L + L EGI+ + ++ L I L K
Sbjct: 880 SAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDAL-----------------IFHLCKEKQ 922
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ +++ S +G + L+ +TCN L+ G K G A + +MQ G P
Sbjct: 923 ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG-VMQRLGWVP 975
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
V+ +ID GF+ EA VF A + T+ CN L+ L K + + W ++ +
Sbjct: 174 VFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSM 233
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ + PDV TY +I CK G K +L +ME+
Sbjct: 234 VE-AKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK 270
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 162/355 (45%), Gaps = 46/355 (12%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF 72
LM C + ++ TFN ++ GLCT GR+ EAARL ++ + C PN IT+ L L +
Sbjct: 235 LMGC-SADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQV 293
Query: 73 EEMVNEFGVICKPDVVTCTNII-----DGLCKDGF-----MMDQGMRPDVVTLNVMTDNL 122
EE G + + +VV +I DG K+ M +G PD T +++ L
Sbjct: 294 EEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGL 353
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDV 168
K G++ A LL M + P+ TY L+ F W KG ++
Sbjct: 354 CKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNL 413
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------- 215
YN +I CKDR ++DA+ +EM S+G + D TYNT+ + N
Sbjct: 414 EGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFEN 473
Query: 216 -----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
V ++ Y T I L +NG +A+ + + + H C L I + N LI LC+ G
Sbjct: 474 LLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGN 533
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + M G+ P+ V+YN++I CK + + A L +M L P+
Sbjct: 534 VDRSIMLLSE-MAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPD 587
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------ALNLF 72
P+ T++ LI GLC GR+ A +L +++ P+++T+ L +
Sbjct: 341 PDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAM 400
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNL 122
E++++ G+ ++ +I +CKD M D QG +PD+ T N + +L
Sbjct: 401 LEVMSDKGL--SMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHL 458
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----AWWS----------KGCRHDV 168
+ +MEEA L E ++ V N TYNTL+ +W GC D+
Sbjct: 459 CNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDI 518
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
SYN LI C+D NV+ ++ L EM +GI+ + +YN L I
Sbjct: 519 VSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLL-----------------IS 561
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L K V +A+++ + N + I T N LI+GLCK+G + A ++ L N +
Sbjct: 562 ELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKL-HNEDVH 620
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D++TYNI+I CK A+ LL +G+ PN
Sbjct: 621 ADIITYNILISWHCKARLLHDASMLLNRAVTSGITPN 657
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 58/338 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P TF+ + LC GR EA + + + C P+ + + T+ A L
Sbjct: 170 PTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATL 229
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM F + C DV T +I+ GLC G MM +G P+ +T +
Sbjct: 230 LDEM---FLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKG 286
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNT-----LMDGF---------AWWSKGCRHD 167
L ++EEA M+ R N +NT L+DG SKGC D
Sbjct: 287 LCLASQVEEA----RTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPD 342
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++Y+ILI+G CK + A+ L REM +G T YT +
Sbjct: 343 AHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVT-----------------YTILL 385
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
+NG + + + + +E N +I +CK R+ A F M++ G
Sbjct: 386 HSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMR-FMQEMKSQGY 444
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+ TYN +I+ C Q ++A L ++ G+ N
Sbjct: 445 KPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVAN 482
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 134 LLEVMIQR-DVNPNTCTYNTLMDGFAWWSKGCRHDVYS-YNILINGYCKDR--NVEDAVS 189
LL+ + R V+P+ +YNT++ FA C DV S Y +++ +DR S
Sbjct: 122 LLDQLPHRFAVSPSFRSYNTVLAAFA--RADCHTDVLSLYRRMVH---RDRVPPTTFTFS 176
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ L RAD MA + PD+ +Y T I L G V EA + +
Sbjct: 177 IAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLM 236
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C + T N ++ GLC +GRL+ A + +M G P+ +TY ++ G C Q ++
Sbjct: 237 GCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIR-GCVPNAITYGFLLKGLCLASQVEE 295
Query: 310 ANGLL 314
A +L
Sbjct: 296 ARTML 300
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L +L TP++VT+N+LI GLC G + A L +KL+ ++IT+N
Sbjct: 568 RVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYN 627
Query: 63 TL 64
L
Sbjct: 628 IL 629
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 177/393 (45%), Gaps = 91/393 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN------ 70
F+P + F+ ++K C +G I A +F + C P++ + N L +LV
Sbjct: 146 FSPTV--FDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAI 203
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVTLNVMTD 120
L + +N G++ PDV TC+ +++ CKDG++ MD G +VVT N + D
Sbjct: 204 LVYDHINRLGIV--PDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLID 261
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------------SKGCR 165
G ME A +L++M +R + N T L+ G+ S+G
Sbjct: 262 GCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMV 321
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D Y+Y +LI+GYC+ ++DAV L EML+ G+R + N L
Sbjct: 322 LDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERL 381
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M ++ P+S+ Y+T +DG + G V +A+ V++ + + T N L+ GLC+
Sbjct: 382 LMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCR 441
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTY--------------------------------- 294
+G + A ++H++++ G+TPD V+Y
Sbjct: 442 VGAFEDALHVWHLMLKR-GVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTY 500
Query: 295 --NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N MI+GFCK + +A M+E G EP+
Sbjct: 501 AFNTMINGFCKMEKMIEAEETFNRMKELGFEPD 533
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 166/372 (44%), Gaps = 83/372 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F P+ VT+ +LI G C G + EA ++ +K+ P++ +N+L L E++
Sbjct: 530 FEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVM 589
Query: 77 NEFGVIC----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+ +C P+VVT +I G C +G M+++G P+V+ + + +L
Sbjct: 590 DLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSL 649
Query: 123 SKDGKMEEANCLLEVMIQRDVN-----------------------------------PNT 147
+ G+++EAN LL+ M+ DV PN+
Sbjct: 650 YRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNS 709
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
YN + G + +G D ++Y LI+GY NV DA SL E
Sbjct: 710 VVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDE 769
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
ML G+ + TYN L I+GL K+G + A K+F +
Sbjct: 770 MLKRGLAPNIITYNAL-----------------INGLCKSGNLDRAQKLFDKLHLKGLAP 812
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ + N LIDG CK G + A D+ + +++ G++P ++TY+ +I+GFCK+G KA L
Sbjct: 813 NVISYNILIDGYCKNGNTREALDLRNKMLKE-GISPSLITYSALIYGFCKQGDMGKATNL 871
Query: 314 LLDMEETGLEPN 325
L +M E + N
Sbjct: 872 LDEMRELFADQN 883
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 141/328 (42%), Gaps = 71/328 (21%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+ N+LI G C G++ EA RL ++ + +P +++TL
Sbjct: 358 NLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTL----------------- 400
Query: 82 ICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+DG C++G M+ G++ +VVT N + L + G E+A
Sbjct: 401 ------------MDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDA 448
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILING 177
+ +M++R V P+ +Y TL+D A W ++G Y++N +ING
Sbjct: 449 LHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMING 508
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+CK + +A M G D TY TL IDG K G V
Sbjct: 509 FCKMEKMIEAEETFNRMKELGFEPDGVTYRTL-----------------IDGYCKLGNVE 551
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA KV + + +IE N LI GL K + + D+ M GL+P+VVTY +
Sbjct: 552 EAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSE-MCLKGLSPNVVTYGTL 610
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+C EG+ KA DM E G PN
Sbjct: 611 IAGWCDEGRLDKAFTAYFDMIEKGFAPN 638
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 168/396 (42%), Gaps = 96/396 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +S ++ I P++ T + ++ C +G + A K+++ + NV+T+
Sbjct: 197 GESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTY 256
Query: 62 NTL--ALVALNLFE------EMVNEFGVICKPDVVTCTNIIDGLCK-------------- 99
N+L V++ E +++ E G++ + VT T +I G C+
Sbjct: 257 NSLIDGCVSIGDMERAEMVLKLMGERGIL--RNKVTLTLLIKGYCRQCKLEEAEKVLREM 314
Query: 100 -----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
DG+ M++ G+R ++ N + + K+G+
Sbjct: 315 ERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQ 374
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+ EA LL M+ D+ P + +Y+TLMDGF C++ V A
Sbjct: 375 VSEAERLLMRMVDWDLEPESYSYSTLMDGF---------------------CREGLVTKA 413
Query: 188 VSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDG 229
+S+ EML GI+++ T+N+L M V PD Y T +D
Sbjct: 414 ISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDL 473
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L+K G A+ +++ I + N +I+G CK+ ++ A + F+ M+ G P
Sbjct: 474 LFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNR-MKELGFEP 532
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D VTY +I G+CK G ++A + ME+ + P+
Sbjct: 533 DGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPS 568
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 141/332 (42%), Gaps = 55/332 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S LL R++ P ++++L+ G C EG + +A ++ ++ NV+T
Sbjct: 373 GQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTH 432
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
N+L L + FE+ ++ + + M+ +G+ PD V+ +
Sbjct: 433 NSLLKGLCRVGAFEDALHVWHL---------------------MLKRGVTPDEVSYCTLL 471
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D L K G+ A L ++ R +T +NT+++GF K G
Sbjct: 472 DLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFE 531
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D +Y LI+GYCK NVE+A + +M E I YN+L
Sbjct: 532 PDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSL---------------- 575
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I GL+K+ E M + S + + T LI G C GRL A+ + +++
Sbjct: 576 -IGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEK- 633
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G P+V+ + ++ + G+ +AN LL M
Sbjct: 634 GFAPNVIICSKIVSSLYRLGRIDEANMLLQKM 665
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 65/265 (24%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-------NVFCCDPNVITFN 62
LL + + +PN+VT+ +LI G C EGR+ +A + + NV C V +
Sbjct: 591 LLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLY 650
Query: 63 TLALV--ALNLFEEMVN--------EFGVICK------------------------PDVV 88
L + A L ++MVN F + K P+ V
Sbjct: 651 RLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSV 710
Query: 89 TCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
I GLCK G + D +G PD T + S G + +A L + M
Sbjct: 711 VYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEM 770
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
++R + PN TYN L++G KG +V SYNILI+GYCK+ N
Sbjct: 771 LKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNT 830
Query: 185 EDAVSLCREMLSEGIRADATTYNTL 209
+A+ L +ML EGI TY+ L
Sbjct: 831 REALDLRNKMLKEGISPSLITYSAL 855
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + F L +L PN++T+N+LI GLC G + A +LF KL++ PNVI++
Sbjct: 758 GNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISY 817
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPD 111
N L IDG CK+G M+ +G+ P
Sbjct: 818 NIL-----------------------------IDGYCKNGNTREALDLRNKMLKEGISPS 848
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
++T + + K G M +A LL+ M + + N + L++G
Sbjct: 849 LITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEG 893
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 157/353 (44%), Gaps = 49/353 (13%)
Query: 2 GRASGGFVLLGRILM-SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
GRA L + ++P++ +FN +IKG+C G +A L +++ F C P+ IT
Sbjct: 193 GRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTIT 252
Query: 61 FNTLA-----LVALNLFEEMVNEFGV--ICKPDVVTCTNIIDGLCKDGFMMD-------- 105
N L +N E++ +C P+ VT T++I G CK G M D
Sbjct: 253 HNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDM 312
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
G RP+ VT NV+ + K ME A + +I R P+ T+++L+DG+
Sbjct: 313 LESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372
Query: 159 ------WWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W G H +VY+++I+I+ CK +A+ + RE+ +R D
Sbjct: 373 DDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILREL---NMRTD------- 422
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ P + +Y ID L K G V EA + + + C T LI G C G
Sbjct: 423 ------IAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKG 476
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
R+ A +FH +++ G PD +T N + K G + + ++L GL
Sbjct: 477 RIPEAITLFHKMVEA-GCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGL 528
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 163/361 (45%), Gaps = 58/361 (16%)
Query: 2 GRASGGFVLLGRIL-MSCFTPNMVTFNSLIKGLCTEGRILEAAR--LFKKLNVFCC-DP- 56
GR L +++ S + P F S + G CT +L+AA L K + CC +P
Sbjct: 122 GRHRDALKLFDQMMDQSGYLPE-AGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPY 180
Query: 57 ------NVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
N + + A A+ LFE + + + PDV + +I G+C+ G
Sbjct: 181 AYNYLLNSLIAHGRAQDAVALFESWIQDG--LYSPDVWSFNVVIKGVCRMGNFQKALELV 238
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGFA 158
M + G PD +T N++ D L + ++ + + +L +QRD PN TY +++ G+
Sbjct: 239 ERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLR-RLQRDGVCMPNAVTYTSVISGYC 297
Query: 159 WWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
K G R + +YN+LINGY K ++E AV + R+++
Sbjct: 298 KAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI--------- 348
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+ + PPD +++ IDG + G + +A +++ +G H + T + +I
Sbjct: 349 --------LRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHS 400
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK R A DI L + P YN +I CK G+ +AN ++ DM+E G P
Sbjct: 401 LCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHP 460
Query: 325 N 325
+
Sbjct: 461 D 461
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 157/356 (44%), Gaps = 56/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G + G+ EA L ++ P+VI +N + AL +
Sbjct: 88 PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 147
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FEEM + P+V T +ID LC++G M G+ P+V+T+N+M D
Sbjct: 148 FEEMKRD----AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDR 203
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK--GCRH--D 167
L K K+EEA + E M + PN T+++L+DG ++ + K C H
Sbjct: 204 LCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPG 263
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFM 211
Y LI + K ED + +EM+ G D T NT LF
Sbjct: 264 AIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFR 323
Query: 212 AIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IN PD+ Y+ I GL K G E ++F A+ CVL N +IDG CK G
Sbjct: 324 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSG 383
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A+ + M+ G P VVTY +I G K + +A L + + G++ N
Sbjct: 384 KVNKAYQLLEE-MKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 438
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 159/373 (42%), Gaps = 89/373 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T N +I LC ++ EA +F+ ++ C PN +TF++L A +L
Sbjct: 192 PNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSL 251
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDN 121
+E+M++ V P + T++I K DG M+ G PD+ +N D
Sbjct: 252 YEKMLDCGHV---PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDC 308
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHD 167
+ K G+ E+ L + P+ +Y+ L+ G +A +GC D
Sbjct: 309 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 368
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++YN +I+G+CK V A L EM +G PP Y + I
Sbjct: 369 THAYNAVIDGFCKSGKVNKAYQLLEEMKVKG-----------------HPPTVVTYGSVI 411
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL K + EA +F ++ L + + LIDG K+GR+ A+ I LMQ GL
Sbjct: 412 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK-GL 470
Query: 288 TPDV-----------------------------------VTYNIMIHGFCKEGQHQKANG 312
TP+V +TY+I+I+G C+ + KA
Sbjct: 471 TPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 530
Query: 313 LLLDMEETGLEPN 325
+M++ GL+PN
Sbjct: 531 FWQEMQKLGLKPN 543
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 155/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L P + + SLI+ GR + +++K++ C P++
Sbjct: 243 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 302
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT LF E +N G I PD + + +I GL K G
Sbjct: 303 NTYMDCVFKAGETEKGRALFRE-INAHGFI--PDARSYSILIHGLVKAGLANETYELFYA 359
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG D N + D K GK+ +A LLE M + P TY +++DG A
Sbjct: 360 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 419
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G + +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 420 LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 479
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F ++ + KC T + LI+GLC++
Sbjct: 480 L-----------------LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRV 522
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G K G +A+GL + G P+
Sbjct: 523 RKFNKAF-VFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPD 578
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 54/317 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L I F P+ +++ LI GL G E LF + C + +
Sbjct: 313 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 372
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMM--- 104
N + A L EEM + P VVT ++IDGL K + +M+
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLEEMKVKGH---PPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G++ +VV + + D K G+++EA ++E ++Q+ + PN T+N L+D +
Sbjct: 430 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 489
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + +Y+ILING C+ R A +EM G++ + TY T
Sbjct: 490 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 549
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + N PDS Y I+GL ++A +F
Sbjct: 550 MISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 609
Query: 251 CVLTIETCNCLIDGLCK 267
C + +TC L+D L K
Sbjct: 610 CNIHTKTCVVLLDALHK 626
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K +++EA L E + Q P YNT++ G+ +KG
Sbjct: 65 LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +YN ++ K R VE+A+ + EM + + + TYN L
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRD 183
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + P+ ID L K + EA +F + + C T + LIDGL K G
Sbjct: 184 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCG 243
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A+ ++ ++ + G P + Y +I F K G+ + + + +M TG P+
Sbjct: 244 RVDDAYSLYEKML-DCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 298
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 20/175 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++++ ++ TPN+ T+N L+ L I EA F+ + C PN IT
Sbjct: 452 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 511
Query: 61 FNTL-----ALVALN---LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
++ L + N +F + + + G+ KP+ +T T +I GL K G +++
Sbjct: 512 YSILINGLCRVRKFNKAFVFWQEMQKLGL--KPNTITYTTMISGLAKAGNILEASGLFSR 569
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G PD + N M + LS K +A L E + N +T T L+D
Sbjct: 570 FKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 624
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 54/363 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITF 61
R G++L + + + + L+KG C R EA L + C P+V ++
Sbjct: 92 RPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSY 151
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N L + A NL M+ E G +C PDVV +IDG K+G
Sbjct: 152 NILLKSLCNQGKSGQADNLLR-MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKE 210
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ PD+VT N + L K M++A L M+ + V PN TYN L+ G++
Sbjct: 211 MVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQ 270
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W + R DV + ++L+ CK +++A + M +G D +YN
Sbjct: 271 WKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNI 330
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + + PD + + I G + +AM +F+ + +H
Sbjct: 331 MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHG 390
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T +I LC+IG++ A + F+ ++ + G+ PD YN +I GFC G K
Sbjct: 391 VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGILLKT 449
Query: 311 NGL 313
G+
Sbjct: 450 QGI 452
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 141 RDVNPNTCTYNTLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVED 186
R ++P + TY LMD A++ + G R D + L+ G+C+ + ++
Sbjct: 71 RVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDE 130
Query: 187 AVSLCREMLSE-GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
A+ + E G D +YN L ++ N D L + A
Sbjct: 131 ALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQA-----DNLLR----------MMA 175
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
G C + N +IDG K G + A D+F ++Q G+ PD+VTYN ++H CK
Sbjct: 176 EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR-GIPPDLVTYNSVVHALCKAR 234
Query: 306 QHQKANGLLLDMEETGLEPN 325
KA L M + PN
Sbjct: 235 AMDKAEAFLRQMVNKRVLPN 254
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 155/339 (45%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P++VT+ LI G C G + A +L ++ +PN + ++ + AL
Sbjct: 288 APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALR 347
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
+ E+MV ++ D T ++ G C G M +G+ D VT M +
Sbjct: 348 VVEDMVQRKVIL---DEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMIN 404
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + ++EEA LL+ M R ++ + TY L+DG+ A +G
Sbjct: 405 GLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTP 464
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V +Y L +G CK +V+ A L EM ++G+ +A TYN+L
Sbjct: 465 NVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL----------------- 507
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+GL K G++ +AM+ + + + T LID LCK G L A + ++ + G
Sbjct: 508 INGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEML-DKG 566
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P +VTYN++++GFC G+ + LL M E + PN
Sbjct: 567 IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPN 605
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 30/244 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + F + ++ TPN+VT+ +L GLC +G + A L +++ + N T+
Sbjct: 445 GKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTY 504
Query: 62 NTL--ALVALNLFEEMVN---EFGVIC-KPDVVTCTNIIDGLCKDG----------FMMD 105
N+L L E+ + + C KPDV T T +ID LCK G M+D
Sbjct: 505 NSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLD 564
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++P +VT NV+ + G++E LL+ M++++++PN TYN+LM +
Sbjct: 565 KGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKS 624
Query: 158 -AWWSKGCR-HDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
KG R DV +YNILI G+CK RN+++A+ EM+ +G R AT+Y+ L
Sbjct: 625 TTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIR 684
Query: 212 AINN 215
+N
Sbjct: 685 LLNK 688
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 152/345 (44%), Gaps = 49/345 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMVNE-F 79
+ +++ G C +G ++ A R F ++ + +T+ T+ V L E+++ E +
Sbjct: 364 YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMW 423
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
D VT T +IDG CK G M+ +G+ P+VVT +TD L K G ++
Sbjct: 424 ARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQ 483
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGC-RHDVYSYNILI 175
AN LL M + + N CTYN+L++G A C + DVY+Y LI
Sbjct: 484 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLI 543
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVP 217
+ CK +++ A SL +EML +GI+ TYN L +M N+
Sbjct: 544 DALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIH 603
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P++ Y + + + +++ + + T N LI G CK +K A
Sbjct: 604 PNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEAL-Y 662
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
FH M G +Y+ +I K+ + +A L DM + GL
Sbjct: 663 FHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGL 707
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 149/344 (43%), Gaps = 73/344 (21%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV----ALNLF 72
N+ ++N L+K LC GR+ +A +LF ++ P+V+T+ L AL A+ L
Sbjct: 258 NVCSYNILLKALCDAGRVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLL 314
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+EMV GV +P+ T+++ LC G++ D L V+ D
Sbjct: 315 DEMV-AGGV--EPNATVYTSVVALLCDKGWISD--------ALRVVED------------ 351
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGCRHDVYSYNILINGY 178
M+QR V + Y T++ GF W+ KG D +Y +ING
Sbjct: 352 -----MVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGL 406
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ +E+A L +EM + + D TY L M V P+
Sbjct: 407 CRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNV 466
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT DGL K G V A ++ + N L T N LI+GLCK G L+ A
Sbjct: 467 VTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTM-A 525
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
M L PDV TY +I CK G +A+ LL +M + G++P
Sbjct: 526 DMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKP 569
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 48/328 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+ + +F+ L+ LC L +A L ++L + P+ N A+++ +E +
Sbjct: 200 FSSDPASFDFLL--LC-----LPSAPLLRRLRQYGISPSPEACN--AVLSRLPLDEAIEL 250
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQ-------GMRPDVVTLNVMTDNLSKDGKMEEA 131
F + +V + ++ LC G + D PDVVT ++ G++E A
Sbjct: 251 FQELPHKNVCSYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENA 310
Query: 132 NCLLEVMIQRDVNPNTCTYNT---LMDGFAWWSKGCR-----------HDVYSYNILING 177
LL+ M+ V PN Y + L+ W S R D Y +++G
Sbjct: 311 VKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSG 370
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+C ++ A EM +G+ D TY TT I+GL + +
Sbjct: 371 FCNKGDLVSARRWFDEMQRKGLATDGVTY-----------------TTMINGLCRAVELE 413
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA K+ + + + T LIDG CK G++ A+ + + ++Q G+TP+VVTY +
Sbjct: 414 EAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQR-GVTPNVVTYTAL 472
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
G CK+G Q AN LL +M GLE N
Sbjct: 473 TDGLCKQGDVQAANELLHEMSNKGLELN 500
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 159/347 (45%), Gaps = 48/347 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
G V R L F P + +N+LI G+C E R EA L ++ DPNVI+++T+
Sbjct: 228 GDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVIS 287
Query: 66 -LVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
L + E + FG + C+P+V T T++I G G M+ +G+ P
Sbjct: 288 CLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSP 347
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW 160
+VV N + L DG M+EA + M + + PN TY+T++ GFA W
Sbjct: 348 NVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETW 407
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+K GCR +V Y +++ C+ + A L M+S+G
Sbjct: 408 NKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDG-----------------C 450
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PP + +I GL + G V AM V + ++C+ I T N L+DGL + + A
Sbjct: 451 PPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACG 510
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ L + + D VTYN +++GF G HQ+ LL M G++
Sbjct: 511 LIREL-EERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIK 556
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 162/330 (49%), Gaps = 43/330 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE-EMVNEF 79
PN+ T+N L+K LC G++ A +L +++ CDP+ +++ T+ L + + E
Sbjct: 177 PNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKAREL 236
Query: 80 GVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+ +P V +I G+CK+ M+D+G+ P+V++ + + LS G +E
Sbjct: 237 AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVE 296
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS----KGCRHDVYSYNILI 175
+ + M R PN T+ +L+ GF W+ +G +V +YN LI
Sbjct: 297 LSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLI 356
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+G C D N+++A+S+ +M + IR + TTY+T+ I G K+G
Sbjct: 357 HGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTI-----------------IYGFAKSGD 399
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
++ A + ++ + N C + C++D LC++ A+D+ ++ + G P V+T+N
Sbjct: 400 LVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISD-GCPPTVITFN 458
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G C+ G+ + A +L ME+ PN
Sbjct: 459 NFIKGLCRAGRVEWAMNVLDQMEKYECLPN 488
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 150/355 (42%), Gaps = 47/355 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG + GR+ + PN+ TF SLIKG GR+ +A L+ + PNV+
Sbjct: 292 MGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVA 351
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMM 104
+NTL L + +E ++ + + K P+V T + II G K G M+
Sbjct: 352 YNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMI 411
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AW 159
+ G RP+VV M D L + ++A L++ MI P T+N + G
Sbjct: 412 NCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVE 471
Query: 160 WSKG---------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
W+ C ++ +YN L++G + +A L RE+ + D TYNT+
Sbjct: 472 WAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIM 531
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
G NG + +++ + + L T N ++ CK+G+
Sbjct: 532 Y-----------------GFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGK 574
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+K A + + D++T+ I++ G C ++A L +M + G+ PN
Sbjct: 575 VKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIFPN 629
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 137/296 (46%), Gaps = 50/296 (16%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC 98
+ ++F ++ F C+P+V +N + AL++ NLF+ +I+ L
Sbjct: 127 QGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFK-------------------MINALY 167
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---- 154
+ M +G+ P+V T NV+ L ++GK++ A LL M + +P+ +Y T++
Sbjct: 168 NN--MKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMC 225
Query: 155 -----DGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D + V YN LI+G CK+ ++A L EM+ G
Sbjct: 226 KLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRG----------- 274
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
V P+ Y+T I L G V ++ VF + C ++T LI G G
Sbjct: 275 ------VDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRG 328
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A +++++++ G++P+VV YN +IHG C +G +A + ME+ + PN
Sbjct: 329 RVGDAVGLWNLMIRE-GVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPN 383
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 101/309 (32%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L ++ +PN+V +N+LI GLC++G + EA ++ ++ PNV T+
Sbjct: 328 GRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTY 387
Query: 62 NTLA---------LVALNLFEEMVN-------------------------EFGVI----- 82
+T+ + A + +M+N F +I
Sbjct: 388 STIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMIS 447
Query: 83 --CKPDVVTCTNIIDGLCKDGFM------MDQGMR----PDVVTLNVMTDNLSKDGKMEE 130
C P V+T N I GLC+ G + +DQ + P++ T N + D L + E
Sbjct: 448 DGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGLFRANAFRE 507
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNILIN 176
A L+ + +R V + TYNT+M GF++ G + D + N +N
Sbjct: 508 ACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVN 567
Query: 177 GYCKDRNV------------------------------------EDAVSLCREMLSEGIR 200
YCK V E+AV EML GI
Sbjct: 568 AYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLHEMLKRGIF 627
Query: 201 ADATTYNTL 209
+ T+N L
Sbjct: 628 PNIATWNVL 636
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
D +Y M + NVP ++ I ++ + +K+F I C +++ N +
Sbjct: 91 DGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLV 150
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+D L K+ +++ M++ GL P+V TYN+++ C+ G+ A LL++M G
Sbjct: 151 LDALLSQNLFKMINALYNN-MKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKG 209
Query: 322 LEPN 325
+P+
Sbjct: 210 CDPD 213
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 164/361 (45%), Gaps = 58/361 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+PN ++FN +IK LC + A +F+ + C P+ T+ TL A+
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L +EM +E C P V +IDGLCK G M +G P+ VT N +
Sbjct: 243 LLLDEMQSEG---CSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L GK+++A LLE M+ PN TY TL++G + +G
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYH 359
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+ + Y++LI+G K+ E+A+SL R+M +G + + Y+ L
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEI 419
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+++ Y++ + G +K G EA++V+ + C + LIDGLC
Sbjct: 420 LNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCG 479
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM---EETGLEP 324
+GR+K A ++ ++ G+ PD V Y+ +I G C G A L +M EE +P
Sbjct: 480 VGRVKEAMMVWSKML-TIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538
Query: 325 N 325
+
Sbjct: 539 D 539
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 158/358 (44%), Gaps = 55/358 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + +P+ V +N LI GLC +G + +L + + C PN +T+N
Sbjct: 237 RIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYN 296
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFM 103
TL A++L E MV+ C P+ VT +I+GL K M
Sbjct: 297 TLIHGLCLKGKLDKAVSLLERMVSS---KCIPNDVTYGTLINGLVKQRRATDAVRLLSSM 353
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK- 162
++G + +V+ L K+GK EEA L M ++ PN Y+ L+DG K
Sbjct: 354 EERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKP 413
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GC + Y+Y+ L+ G+ K E+AV + +EM G + Y+ L
Sbjct: 414 NEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVL 473
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IDGL G V EAM V+S + + +I GLC IG
Sbjct: 474 -----------------IDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIG 516
Query: 270 RLKIAWDIFHMLM--QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++H ++ + P PDVVTYNI++ G C + +A LL M + G +P+
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPD 574
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 122/292 (41%), Gaps = 60/292 (20%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------------MDQGMRPDVV 113
A++LF MV+EF CK V + ++++ + +G M+ + P+ +
Sbjct: 131 AVDLFHRMVDEFR--CKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGL 188
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ N++ L K ++ A + M +R P+ TY TLMDG
Sbjct: 189 SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGL---------------- 232
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
CK+ +++AV L EM SEG YN L M +
Sbjct: 233 -----CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ Y T I GL G + +A+ + + + KC+ T LI+GL K R A
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR---AT 344
Query: 276 DIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D +L M+ G + Y+++I G KEG+ ++A L M E G +PN
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 34/225 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A L ++ PN+V ++ L+ GLC EG+ EA + ++ C PN T+
Sbjct: 376 GKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
++L L EE V + + C + + +IDGLC G M+
Sbjct: 436 SSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLT 495
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G++PD V + + L G M+ A L M+ ++ P + +
Sbjct: 496 IGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQE-EPKS-----------------Q 537
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
DV +YNIL++G C +++ AV L ML G D T NT
Sbjct: 538 PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFL 582
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 19/231 (8%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L R++ S PN T++SL+KG G EA +++K+++ C N +
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCY 470
Query: 62 NTL--ALVALNLFEEMV----NEFGVICKPDVVTCTNIIDGLCKDGFM------------ 103
+ L L + +E + + KPD V ++II GLC G M
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLC 530
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +PDVVT N++ D L + A LL M+ R +P+ T NT ++ + S
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSN 590
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
C L+ K + V A ++ ML + + +T+ + I
Sbjct: 591 SCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREI 641
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 46/206 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++ ++L P+ V ++S+IKGLC G +
Sbjct: 480 VGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSM--------------------- 518
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--KD--------GFMMDQGMRP 110
AL L+ EM+ + +PDVVT ++DGLC KD M+D+G P
Sbjct: 519 -----DAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDP 573
Query: 111 DVVTLNVMTDNLS-KDGKMEEANCLLEVMI----QRDVNPNTCTYNTLMDGFAWWSKGCR 165
DV+T N + LS K ++ LE ++ +R CT +M G K
Sbjct: 574 DVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLG-----KYLA 628
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLC 191
++ +++ CK + + A+ C
Sbjct: 629 PKTSTWAMIVREICKPKKINAAIDKC 654
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 160/377 (42%), Gaps = 60/377 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L G++ P +N++I G + R +A +L ++L C P+V++F
Sbjct: 295 GRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSF 354
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
N++ AL LF+ M + KP++ T IID LC G + +
Sbjct: 355 NSILTCLGKKRKVDEALTLFDVMKKD----AKPNISTYNIIIDMLCMAGRVNEAYKIRDE 410
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G+ P+++++N+M D L K ++EEA+ + E +R NPN+ TY +L+DG K
Sbjct: 411 MELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLG--KK 468
Query: 163 GCRHDVYS----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G D Y Y LI + ED + +EM+ G R D T
Sbjct: 469 GKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLL 528
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NT M PD Y+ I GL K G E +F A+
Sbjct: 529 NTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQ 588
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
L N ++DGLCK G++ A+++ M+ + P V TY ++ G K +
Sbjct: 589 QGFALDARAYNAVVDGLCKSGKVDKAYEVLEE-MKVKHVHPTVATYGSIVDGLAKIDRLD 647
Query: 309 KANGLLLDMEETGLEPN 325
+A L + + G+E N
Sbjct: 648 EAYMLFEEAKSKGIELN 664
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 159/370 (42%), Gaps = 83/370 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------- 65
PN VT+ SLI GL +G+I +A RLF+K+ D N I + +L
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKI 512
Query: 66 ------------LVALNLFEEMVNEFGVICK--------------PDVVTCTNIIDGLCK 99
L LN + + V + G + K PDV + + +I GL K
Sbjct: 513 YKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTK 572
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M QG D N + D L K GK+++A +LE M + V+P T
Sbjct: 573 AGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVAT 632
Query: 150 YNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y +++DG A SKG +V Y+ LI+G+ K +++A + EM+
Sbjct: 633 YGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMM 692
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+G+ + T+N+L +D L K + EA+ F ++ KC
Sbjct: 693 KKGLTPNVYTWNSL-----------------MDALVKTEEIDEALICFQSMKEMKCSPNT 735
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI+GLC++ + A+ +F MQ GL P+VVTY MI G K G A L
Sbjct: 736 YTYSILINGLCRVQKYNKAF-VFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFE 794
Query: 316 DMEETGLEPN 325
+ G P+
Sbjct: 795 RFKTNGGIPD 804
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNE 78
PN+ T+N +I LC GR+ EA ++ ++ + PN+++ N + L N EE
Sbjct: 383 PNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRI 442
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F C P+ VT ++IDGL K G M+D G + + + N
Sbjct: 443 FESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFM 502
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYS 170
G+ E+ + + + MI+R P+ NT MD G A + S G DV S
Sbjct: 503 HGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRS 562
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
Y+ILI+G K + ++ + M +G DA YN + M
Sbjct: 563 YSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMK 622
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ +V P Y + +DGL K + EA +F + L + + LIDG K+GR+
Sbjct: 623 VKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRID 682
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ I +M+ GLTP+V T+N ++ K + +A M+E PN
Sbjct: 683 EAYLILEEMMKK-GLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPN 734
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 54/300 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLAL-------VAL 69
F P++ +++ LI GL G+ E + +F+ ++ F D L A
Sbjct: 556 FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAY 615
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMM-----DQGMRPDVVTLNVMT 119
+ EEM + P V T +I+DGL K + +M+ +G+ +V+ + +
Sbjct: 616 EVLEEMKVKH---VHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLI 672
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D K G+++EA +LE M+++ + PN T+N+LMD + C
Sbjct: 673 DGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCS 732
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-------- 217
+ Y+Y+ILING C+ + A +EM +G+ + TY T+ + V
Sbjct: 733 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSL 792
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PDS + I+G+ +EA +VF C L ++TC L+D L K
Sbjct: 793 FERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNK 852
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 155/420 (36%), Gaps = 126/420 (30%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNLFEEMV 76
F +L++ L EG++ A L ++ C +P+++ +N +A F E+
Sbjct: 214 FTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHEL- 272
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDG----------------------------------- 101
G+ +PD V+ T+++ LCK G
Sbjct: 273 KAHGL--RPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330
Query: 102 ----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
+ ++G P VV+ N + L K K++EA L +VM ++D PN TYN
Sbjct: 331 RFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKDAKPNISTYN 389
Query: 152 TLMDGF-------------------------------------------------AWWSK 162
++D + +
Sbjct: 390 IIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASER 449
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
GC + +Y LI+G K ++DA L +ML G A+ Y +L
Sbjct: 450 GCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDG 509
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M PD + TY+D ++K G V + +F + + + + + + LI G
Sbjct: 510 HKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHG 569
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L K G+ + +IF + Q G D YN ++ G CK G+ KA +L +M+ + P
Sbjct: 570 LTKAGQARETSNIFQAMSQQ-GFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHP 628
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 34/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D G V + L+++G+ME A L++ + + P+ YN +D F
Sbjct: 202 MQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGS 261
Query: 158 ---AW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
AW + G R D SY ++ CK + +A L +M +E A YNT
Sbjct: 262 VDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNT 321
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + P + + + L K V EA+ +F +
Sbjct: 322 MIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVM-KKD 380
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
I T N +ID LC GR+ A+ I M+ GL P++++ NIM+ CK Q ++A
Sbjct: 381 AKPNISTYNIIIDMLCMAGRVNEAYKIRDE-MELAGLFPNLLSVNIMVDRLCKANQLEEA 439
Query: 311 NGLLLDMEETGLEPN 325
+ + E G PN
Sbjct: 440 HRIFESASERGCNPN 454
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 39/168 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +++L ++ TPN+ T+NSL+ L I EA F+ + C PN T
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYT 737
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
++ L I+GLC+ F M QG+ P
Sbjct: 738 YSIL-----------------------------INGLCRVQKYNKAFVFWQEMQKQGLIP 768
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+VVT M L+K G + +A L E P++ ++N L++G +
Sbjct: 769 NVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMS 816
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
R +Y +LI + R E A+ L R+M G +VP ++T
Sbjct: 173 RPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEV-------------SVP----LFT 215
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T + L + G + A+ + + I N ID K G + +AW FH L +
Sbjct: 216 TLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAH 275
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL PD V+Y M+ CK G+ +A L ME
Sbjct: 276 -GLRPDDVSYTSMVWVLCKAGRLGEAEELFGQME 308
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 153/336 (45%), Gaps = 54/336 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N V++ +LI G C G+I EA LF ++ C P+V T+ L AL F
Sbjct: 259 NEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFF 318
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EEMV E G+ +P+V T T +ID CK G M+++G+ VV N + D
Sbjct: 319 EEMV-ENGI--EPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGY 375
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G ME+A C+L+ M V PN+ TYN L+ GF + ++
Sbjct: 376 CKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNL 435
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+YN LI+G CK R V+ A L M+ +G PD + +ID
Sbjct: 436 VTYNTLIHGLCKARVVDSAWRLHHLMIKDGF-----------------VPDQRTFCAFID 478
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L K G V +A +VF ++ LIDG CK + A +F ++ G
Sbjct: 479 CLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFE-GCF 537
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
P+ +T+N+++ G KEG+ + A L+ M + +P
Sbjct: 538 PNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKP 573
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 165/397 (41%), Gaps = 86/397 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--------- 51
M RA LL ++ + +PN+VT+N+LI GLC + R++++A L +
Sbjct: 416 MDRA---MALLNKMYENKLSPNLVTYNTLIHGLC-KARVVDSAWRLHHLMIKDGFVPDQR 471
Query: 52 -FCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF------- 102
FC + + A +FE + + + + T +IDG CK + F
Sbjct: 472 TFCAFIDCLCKMGKVEQAHQVFESLKEKHA---EANEFLYTALIDGYCKAEKFSDAHLLF 528
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+ +G P+ +T NV+ D L K+GK+E+A L++VM + D P TY L++
Sbjct: 529 KRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRE 588
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S GC+ +V +Y I YC+ + +A + ++ EGI D+ Y
Sbjct: 589 SDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIY 648
Query: 207 NTLFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAM-------- 240
+ L A + P Y+ + L + E M
Sbjct: 649 DVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTN 708
Query: 241 ------------------KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+F + CV + T + LI GLCK+ L +A+ +F+ M
Sbjct: 709 ISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNH-M 767
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ G++P +N ++ CK G H++A LL M E
Sbjct: 768 KESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 149/347 (42%), Gaps = 73/347 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPNV 58
+G+ G +L +L ++V FN+LI G C G + +A + KLN C PN
Sbjct: 343 VGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVC--PNS 400
Query: 59 ITFNTL------------ALVALN-LFEEMVNEFGVICKPDVVTCTNIIDGLCK------ 99
T+N L A+ LN ++E ++ P++VT +I GLCK
Sbjct: 401 RTYNELICGFCRKKSMDRAMALLNKMYENKLS-------PNLVTYNTLIHGLCKARVVDS 453
Query: 100 ----DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M+ G PD T D L K GK+E+A+ + E + ++ N
Sbjct: 454 AWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANE-------- 505
Query: 156 GFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+ Y LI+GYCK DA L + ML EG ++ T+N L
Sbjct: 506 -------------FLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVL------ 546
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+DGL K G V +AM + +G T+ T LI+ + + A
Sbjct: 547 -----------LDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRA- 594
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
++F M + G P+VVTY I +C++G+ +A +++ ++E G+
Sbjct: 595 NMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGI 641
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 150/372 (40%), Gaps = 83/372 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+ ++ ++N L L G I E LFK + +PN+I+FNT+ +VA
Sbjct: 151 FSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAK 210
Query: 70 NLF-------------------------EEMVNEFGVI-------CKPDVVTCTNIIDGL 97
F E+ + + V C + V+ TN+I G
Sbjct: 211 AYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGF 270
Query: 98 CKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C+ G M + G PDV T V+ + GK EA E M++ + PN
Sbjct: 271 CEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNV 330
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TY L+D F KG V +N LI+GYCK +EDA+ +
Sbjct: 331 YTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDS 390
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M +N V P+S Y I G + + AM + + + +K
Sbjct: 391 -----------------MKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSP 433
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T N LI GLCK + AW + H+++++ G PD T+ I CK G+ ++A+ +
Sbjct: 434 NLVTYNTLIHGLCKARVVDSAWRLHHLMIKD-GFVPDQRTFCAFIDCLCKMGKVEQAHQV 492
Query: 314 LLDMEETGLEPN 325
++E E N
Sbjct: 493 FESLKEKHAEAN 504
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 44/360 (12%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +L R+L PN +TFN L+ GL EG++ +A L + F P V T+
Sbjct: 520 KFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYT 579
Query: 63 TLALVAL--------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM---------- 104
L L N+F + + G C+P+VVT T I C+ G ++
Sbjct: 580 ILIEEILRESDFDRANMFLDQMISSG--CQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIK 637
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--FAWWSK 162
++G+ D +V+ + G+++ A +L M P+ TY+ L+ F ++K
Sbjct: 638 EEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNK 697
Query: 163 -GCRHDVYSYNILIN--GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
G D+ S NI ++ K + E L +M+ +G + TY+ L
Sbjct: 698 EGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHL 757
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + + P +++ + + K G EA+++ ++ + + +E+ L
Sbjct: 758 SLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLL 817
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ GL + G + A +IF L+ + G D V + +++ G ++G + + L ME+TG
Sbjct: 818 VCGLFEQGNQEKAEEIFRSLL-SCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTG 876
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 115/290 (39%), Gaps = 43/290 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK-------LNVFCCDPNVITF 61
+ L +++ S PN+VT+ + IK C +GR+LEA + K L+ F D V +
Sbjct: 596 MFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAY 655
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
+ + + F ++ F C+P T + ++ L + + +GM D+ + N+ DN
Sbjct: 656 GCIGQLD-SAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYN-KEGMGLDLNSTNISVDN 713
Query: 122 --LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
+ K E L E M+++ PN TY+ L+ G G
Sbjct: 714 ANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGIS 773
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----FMAINNVPP--- 218
+N L++ CK E+A+ L M+ A +Y L F N
Sbjct: 774 PSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEI 833
Query: 219 -----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
D V+ +DGL + G+V E ++ + C L +T
Sbjct: 834 FRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDT 883
>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
Length = 859
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 150/349 (42%), Gaps = 71/349 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + +L NMV N+LIKG C G++ EA R+F
Sbjct: 345 MGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVF-------------- 390
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+ +V NL KPD + ++DG C++G M+ G+ P
Sbjct: 391 ---VGMVDWNL------------KPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITP 435
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW 160
VVT N + L G ++A L +M++R V PN + T++D F W
Sbjct: 436 TVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLW 495
Query: 161 S----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+G ++N +I+G CK + +A ++ M G+ D TY TL
Sbjct: 496 KEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLS------ 549
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
DG KNG V EA ++ + +IE N LIDGL KI +L D
Sbjct: 550 -----------DGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTD 598
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + MQ GL+P+VVTY +I G+C E + KA L +M E G PN
Sbjct: 599 LL-VEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPN 646
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 165/375 (44%), Gaps = 54/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++ +I+ + P++ + ++ C GR+ A + +K+ +PNV+T+
Sbjct: 205 GEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTY 264
Query: 62 NTL--ALVALNLFE------EMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------- 103
N L V FE +++E GV +VVTCT ++ G CK G M
Sbjct: 265 NGLVNGYVGRGDFEGVERVLRLMSERGV--SRNVVTCTMLMRGYCKKGKMDEAEKLLREV 322
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
D+ + D V+ D + G+ME+A + + M++ + N NTL+ G+ +
Sbjct: 323 EEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQ 382
Query: 163 GC--------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + D YSYN L++GYC++ V A LC EML +GI TYNT
Sbjct: 383 VCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNT 442
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M V P+ T +D +K G AM ++ I
Sbjct: 443 VIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRG 502
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ N +I GLCK+G+L A +F M+ GL+PD +TY + G+CK G Q+A
Sbjct: 503 FTKSTVAFNTMISGLCKMGKLMEAGAVFDR-MKELGLSPDEITYRTLSDGYCKNGNVQEA 561
Query: 311 NGLLLDMEETGLEPN 325
+ ME + +
Sbjct: 562 FQIKGVMERQAMSAS 576
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 167/387 (43%), Gaps = 83/387 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG + +L IL FT + V FN++I GLC G+++EA +F ++ P+ IT
Sbjct: 485 MGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEIT 544
Query: 61 FNTLA------------------------LVALNLFEEMVNEFGVICK------------ 84
+ TL+ ++ ++ +++ I K
Sbjct: 545 YRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQ 604
Query: 85 -----PDVVTCTNIIDGLCKD-----GF-----MMDQGMRPDVVTLNVMTDNLSKDGKME 129
P+VVT +I G C + F M+++G P+VV + + +L +D ++
Sbjct: 605 TRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRIS 664
Query: 130 EANCLLEVMIQRDVNP--NTCTYNTLMDGFAWWSKGC-----RHDV-------YSYNILI 175
EA +L+ M+ D+ N C+ + + ++ + D+ YNI I
Sbjct: 665 EATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAI 724
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+G CK +++A S+ ++S G PD+ Y T I +G
Sbjct: 725 DGLCKSGKLDEARSVLSVLMSRGF-----------------LPDNFTYCTLIHACSVSGN 767
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V EA K+ + + I N LI+GLCK+G + A +F+ L Q GL P+ VTYN
Sbjct: 768 VDEAFKLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQK-GLVPNAVTYN 826
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGL 322
I+I +C+ G KA+ L M E G+
Sbjct: 827 ILIGCYCRIGDLDKASRLREKMTEEGI 853
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 167/409 (40%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S F+L +L TP +VT+N++IKGL G +A L+ + PN I+
Sbjct: 416 GKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISC 475
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG----- 107
T+ + A+ L++E++ G V +I GLCK G +M+ G
Sbjct: 476 CTMLDCFFKMGDSDRAMMLWKEIL---GRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDR 532
Query: 108 -----MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ PD +T ++D K+G ++EA + VM ++ ++ + YN+L+DG
Sbjct: 533 MKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRK 592
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G +V +Y LI+G+C ++ ++ A L EM+ G + +
Sbjct: 593 LNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSK 652
Query: 209 LFMAINNVPPDSH---------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ ++ S V+ D L KN LEA K+ ++
Sbjct: 653 IVSSLYRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICN 712
Query: 254 TIE---TCNCLIDGLCKIGRLKIAWDIFHMLMQN-------------------------- 284
++ N IDGLCK G+L A + +LM
Sbjct: 713 SLSNNIVYNIAIDGLCKSGKLDEARSVLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAF 772
Query: 285 --------PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P++ YN +I+G CK G +A L + + GL PN
Sbjct: 773 KLRDEMLEKGLIPNITIYNALINGLCKLGNIDRAQRLFYKLYQKGLVPN 821
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 147/334 (44%), Gaps = 55/334 (16%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEMV 76
F+ L+K G A +F +++ P + + + L VA+ +F+++V
Sbjct: 159 FDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIV 218
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
G++ PDV C+ +++ C+ G M+ +G+ P+VVT N + + G
Sbjct: 219 GT-GIV--PDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRG 275
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH---------------DVYSY 171
E +L +M +R V+ N T LM G+ K D Y
Sbjct: 276 DFEGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVY 335
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+L++GYC+ +EDAV + EML G++ + NTL I G
Sbjct: 336 GVLVDGYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTL-----------------IKGYC 378
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G V EA +VF + + + N L+DG C+ G++ A+ + ++ + G+TP V
Sbjct: 379 KLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAFMLCEEMLGD-GITPTV 437
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN +I G G + A L M E G+ PN
Sbjct: 438 VTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPN 471
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 126/312 (40%), Gaps = 43/312 (13%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
S + P+ ++++ L+ L EA + ++L C T N A N +
Sbjct: 95 SHYRPHSLSYSILLHILTHARLFPEATTVLRQLMDLHC-----TNNYRAYAVCNHVFSVY 149
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK---MEEANC 133
EFG C+ + D L K ++GM + + D +S+ G+ + +
Sbjct: 150 KEFGF--------CSGVFDMLMKA--FAERGMTKHAL---YVFDEMSRIGRVPGLRSCSF 196
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
LL ++Q+ + G G DVY +I++N +C+ V+ A+ + +
Sbjct: 197 LLGKLVQKGEGRVAVMVFDQIVG-----TGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEK 251
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M+ EG+ + TYN L ++G G +V +
Sbjct: 252 MVKEGLEPNVVTYNGL-----------------VNGYVGRGDFEGVERVLRLMSERGVSR 294
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ TC L+ G CK G++ A + + ++ L D Y +++ G+C+ G+ + A +
Sbjct: 295 NVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRI 354
Query: 314 LLDMEETGLEPN 325
+M GL+ N
Sbjct: 355 RDEMLRVGLKVN 366
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 147/326 (45%), Gaps = 53/326 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ + + F L+K LC E R A + +++ C P+V +
Sbjct: 112 GRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFS 171
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G C PDVV+ + IIDGL K+G
Sbjct: 172 YNILLKGLCHESRSQEALELLHMMADDGG-DCPPDVVSYSTIIDGLFKEGDSDKAYSTYH 230
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+++G+ PDVVT N + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 231 EMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSG 290
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G D +Y L++ CK+ +A + M+ G++ + TY+
Sbjct: 291 QSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD HV++ I K+ V AM VFS +
Sbjct: 351 TLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQ 410
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAW 275
+ + T LIDGLCK GR+ A
Sbjct: 411 RLTPDVVTYGTLIDGLCKSGRVDDAM 436
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 16/163 (9%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC V+SYNIL+ G C + ++A+ L M +G + PPD
Sbjct: 164 GCAPHVFSYNILLKGLCHESRSQEALELLHMMADDG---------------GDCPPDVVS 208
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+T IDGL+K G +A + + + + T N ++ LCK + A D+ + ++
Sbjct: 209 YSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMV 268
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+N G+ PD +TYN ++HG+C GQ ++A G+L M G+EP+
Sbjct: 269 KN-GVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPD 310
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G++ +L ++ P+ VT+ SL+ LC GR +EA ++ + PNVIT+
Sbjct: 290 GQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITY 349
Query: 62 NTL--------ALVALNLFEEMVNEFGVICKPD-------VVTCT---NIIDGLCKDGFM 103
+TL ALV + +++ G+ +PD + CT N+ + M
Sbjct: 350 STLLHGYATKGALVEMRDLLDLMVRNGI--QPDRHVFSILICACTKHQNVDVAMFVFSKM 407
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
Q + PDVVT + D L K G++++A LE
Sbjct: 408 RQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE 440
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ LC R A +I M G P V +YNI++ G C E + Q+A LL M +
Sbjct: 139 LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADD 198
Query: 321 G 321
G
Sbjct: 199 G 199
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 157/369 (42%), Gaps = 83/369 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ T+ +LI GLC G + A LF +++ PN +T+N L A V
Sbjct: 353 PNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVV 412
Query: 69 LNL------------FEEMVNEFGVICKP-----------------DVVTCTNIIDGLCK 99
LNL + EM+ + ++ P ++VT II G C
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M D G +PD + + K KME A L M+ + PN T
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVT 532
Query: 150 YNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y L+DG+ K GCR +V +YN+LI+G K N A LC+ M+
Sbjct: 533 YTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMI 592
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
EGI + T YT IDGL KNG A+++F+ + C+ +
Sbjct: 593 EEGIFPNVVT-----------------YTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNL 635
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + LI L + G+++ A ++F L ++ GL PD +TY MI + G+ + A L
Sbjct: 636 LTYSSLIRALGQEGKVEEAENLFAELERH-GLIPDEITYVKMIEAYIMSGKVEHAFNFLG 694
Query: 316 DMEETGLEP 324
M + G +P
Sbjct: 695 RMIKAGCQP 703
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 157/357 (43%), Gaps = 57/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------N 70
PN VT+++LI GLC GR+ EA L +++ + P T T ++AL
Sbjct: 283 PNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTC-TGPIIALCDMGCYEDAWR 341
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF +M N+ C+P+V T T +I GLC G M G+ P+ VT N + +
Sbjct: 342 LFVDMKNKG---CEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALIN 398
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
L ++ +++ A +L +M + +PN TYN ++ G+ +G
Sbjct: 399 ILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSA 458
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
++ +YN +I GYC N A+ + M G + D +Y L
Sbjct: 459 NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLF 518
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P+ YT IDG K+ + A + + C ++T N LI GL K
Sbjct: 519 NEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ ++++ G+ P+VVTY MI G CK G A + M E G PN
Sbjct: 579 NNFSGAEELCKVMIEE-GIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 159/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + ++ ++ S +P+ T+ S+I G C + + A ++F ++ C+PN +T+
Sbjct: 229 GNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTY 288
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+TL A +L EM+ G++ P TCT I LC G
Sbjct: 289 STLINGLCDSGRVNEAFDLIREMILH-GIL--PTAHTCTGPIIALCDMGCYEDAWRLFVD 345
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M ++G P+V T + L G ++ A L M + V PNT TYN L++
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRR 405
Query: 156 -GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A+ GC ++ +YN +I GYC + + A+ + ML G A+ TYNT
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M PD YT I G K + A +F+ + +
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDG 525
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T LIDG CK +L A + M+ G P+V TYN++IHG K+ A
Sbjct: 526 LCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584
Query: 311 NGLLLDMEETGLEPN 325
L M E G+ PN
Sbjct: 585 EELCKVMIEEGIFPN 599
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 89/381 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
R+L PN++ +N++I LC +G + +A + KK+ P+ T+ ++ L
Sbjct: 205 RMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 264
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------------------- 102
AL +F +M E C+P+ VT + +I+GLC G
Sbjct: 265 DLDSALQVFNQMAKEG---CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 321
Query: 103 ------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
M ++G P+V T + L G ++ A L M
Sbjct: 322 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM 381
Query: 139 IQRDVNPNTCTYNTLMD--------GFAW------WSKGCRHDVYSYNILINGYCKDRNV 184
+ V PNT TYN L++ +A+ GC ++ +YN +I GYC +
Sbjct: 382 SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDP 441
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+ A+ + ML G A+ TYNT+ I G +G A+++
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTI-----------------IKGYCDSGNTTSALRILD 484
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + C + LI G CKI +++ A+ +F+ ++ + GL P+ VTY +I G+CK+
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEVTYTALIDGYCKD 543
Query: 305 GQHQKANGLLLDMEETGLEPN 325
+ A LL M+ +G PN
Sbjct: 544 EKLDTATSLLEHMKRSGCRPN 564
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 148/383 (38%), Gaps = 80/383 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++ +L + N+VT+N++IKG C G A R+ + C P+ +
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWS 497
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A LF EMV++ +C P+ VT T +IDG CKD
Sbjct: 498 YTELICGFCKISKMESAFGLFNEMVDDG--LC-PNEVTYTALIDGYCKDEKLDTATSLLE 554
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M G RP+V T NV+ L+K A L +VMI+ + PN TY ++DG
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+GC ++ +Y+ LI ++ VE+A +L E+ G+
Sbjct: 615 STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGL-------- 666
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL-- 265
PD Y I+ +G V A + C T+ T LI GL
Sbjct: 667 ---------IPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN 717
Query: 266 ------------------CKIGRLKIAWDIFHMLMQ-----NPGLTPDVVTYNIMIHGFC 302
C G D ++ +PGL+ V N ++
Sbjct: 718 EYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS--VQVQNALVSNLS 775
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
G+ +AN LL M GL P+
Sbjct: 776 TAGRWFEANELLGSMISQGLCPD 798
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 79/380 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ + F L ++ PN VT+ +LI G C + ++ A L + + C PNV T
Sbjct: 508 ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQT 567
Query: 61 FNTL--ALVALNLF---EEMVN---EFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N L L N F EE+ E G+ P+VVT T +IDGLCK+G
Sbjct: 568 YNVLIHGLTKQNNFSGAEELCKVMIEEGIF--PNVVTYTAMIDGLCKNGSTSLALEMFNK 625
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M++QG P+++T + + L ++GK+EEA L + + + P+ TY +++ + K
Sbjct: 626 MIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGK 685
Query: 163 --------------GCRHDVYSYNILING-----YCKDRNV------------------E 185
GC+ +++Y +LI G D+ + +
Sbjct: 686 VEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQ 745
Query: 186 DAVSLCREMLSE-----------GIRADATTYNTLF--------MAINNVPPDSHVYTTY 226
DAVS+ L+E + ++ +T F M + PD Y +
Sbjct: 746 DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSL 805
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNP 285
+ L + V AM VF + C + + LI LC++ R K A F +MLM+
Sbjct: 806 LCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT- 864
Query: 286 GLTPDVVTYNIMIHGFCKEG 305
PD V ++I G ++G
Sbjct: 865 -WNPDDVVQAVLIDGLLRDG 883
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 55/373 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G++ +L ++ P+ V + +LI G G + A + F ++ P+ IT
Sbjct: 341 IGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYIT 400
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+ TL + NLF EM++ G+ KPD VT T +ID CK G M++
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISR-GL--KPDEVTYTTLIDVYCKAGEMVNAFSLHN 457
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
GM P++VT + D L K G+++ AN LL+ M ++ + N C YN++++G
Sbjct: 458 EMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G D +Y +I+ YC+ +++ A L +EML G++ T+N
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L +M + PD+ Y T + + K++ + N
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQ 637
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T N LI G CK LK AW ++ +++ G P V +YN +I F K+ + +
Sbjct: 638 GVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEK-GYVPTVTSYNALIKRFYKKKKILE 696
Query: 310 ANGLLLDMEETGL 322
A L +M GL
Sbjct: 697 ARELFEEMRGHGL 709
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 162/391 (41%), Gaps = 87/391 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G L+ + + PN T+NS+I LC G+ EA ++ +++ P+ +
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL A F+EM+++ PD +T T +I G + G
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSK---KISPDYITYTTLIQGFGQGGKVIEPQNLFH 422
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ +G++PD VT + D K G+M A L M+Q + PN TY L+DG
Sbjct: 423 EMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + +V YN ++NG CK N+E A+ L +EM GI DA TY
Sbjct: 483 ELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY- 541
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TT ID + G + +A K+ + + T+ T N L++G C
Sbjct: 542 ----------------TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCM 585
Query: 268 IGRLK-----IAWDI-----------------------------FHMLMQNPGLTPDVVT 293
+G L+ + W + + M+N G+ PD T
Sbjct: 586 LGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNT 645
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YNI+I G CK ++A L +M E G P
Sbjct: 646 YNILIKGHCKARNLKEAWFLYKEMIEKGYVP 676
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 140/309 (45%), Gaps = 53/309 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L ++ TPN+VT+ +LI GLC G + A L ++ NV +
Sbjct: 447 GEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIY 506
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
N++ A+ L +EM E I PD +T T +ID C+ G
Sbjct: 507 NSMVNGICKAGNIEQAIKLMKEM--EVAGI-DPDAITYTTVIDAYCRLGDIDKAHKLLQE 563
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G++P VVT NV+ + G +E+ + LL M+++ + P+ TYNTLM
Sbjct: 564 MLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNS 623
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D +YNILI G+CK RN+++A L +EM+ +G T+YN
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I YK +LEA ++F + H V E N +D +
Sbjct: 684 L-----------------IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEE 726
Query: 269 GRLKIAWDI 277
G ++I ++
Sbjct: 727 GDVEITLNL 735
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ TP++V+++++I G C G + +A +L + + PN T
Sbjct: 271 LGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYT 330
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N++ L+ A + EM+++ + PD V T +I G K G
Sbjct: 331 YNSIILLLCKIGKSFEAEKVLREMMSQKII---PDNVVYTTLIHGFFKLGHVRTANKWFD 387
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------ 155
M+ + + PD +T + + GK+ E L MI R + P+ TY TL+D
Sbjct: 388 EMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG 447
Query: 156 ----GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
F+ ++ G ++ +Y LI+G CK ++ A L EM +G++ + YN
Sbjct: 448 EMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYN 507
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ ++G+ K G + +A+K+ + T +ID C+
Sbjct: 508 SM-----------------VNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550
Query: 268 IGRLKIAWDIFHMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+G + D H L+Q + GL P VVT+N++++GFC G + + LL M E G+ P
Sbjct: 551 LGDI----DKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606
Query: 325 N 325
+
Sbjct: 607 D 607
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 141/337 (41%), Gaps = 54/337 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN + F+ + L G + EA +L KL + V + N N E +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIK 247
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
V C + G+ + + N++ +L + GK++EA+ LL M
Sbjct: 248 VFC---------------------EYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDF 286
Query: 141 RDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVED 186
R P+ +Y+T++DG+ KG + + Y+YN +I CK +
Sbjct: 287 RSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFE 346
Query: 187 AVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYID 228
A + REM+S+ I D Y TL M + PD YTT I
Sbjct: 347 AEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
G + G V+E +F + + T LID CK G + A+ + H M G+T
Sbjct: 407 GFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSL-HNEMVQMGMT 465
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P++VTY +I G CK G+ AN LL +M + GL+ N
Sbjct: 466 PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLN 502
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 147/338 (43%), Gaps = 54/338 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++VT+N+LI G C +G++ EA +L ++ PN ++ L A N
Sbjct: 342 PDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNW 401
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EM KPD+VT ++ GL G M+++G+ PD N++
Sbjct: 402 LIEMTERGH---KPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSG 458
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHD 167
L K K+ A LL M+ + V P+ Y TL+DGF KG
Sbjct: 459 LCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPG 518
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ YN +I GYCK ++DA++ M ++ PD Y+T I
Sbjct: 519 IVGYNAMIKGYCKFGMMKDAMACINRMKKR-----------------HLAPDEFTYSTVI 561
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K + A K+F + KC + T LI+G C+ G L + IF MQ GL
Sbjct: 562 DGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFRE-MQACGL 620
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY+I+I FCKE + A +M PN
Sbjct: 621 VPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPN 658
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 156/355 (43%), Gaps = 53/355 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72
PN++ +N+LI G C +G + A LF +L + P V T+ + A++
Sbjct: 237 PNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRL 296
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+N G+ +V IID K G M++ G +PD+VT N +
Sbjct: 297 LMEMNSRGLTV--NVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGS 354
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------AWW-----SKGCRHDV 168
+DGK+ EA+ LLE + + + PN +Y L+ + + W +G + D+
Sbjct: 355 CRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDL 414
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--------------- 213
+Y L++G V+ A+++ +ML G+ DA YN L +
Sbjct: 415 VTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAE 474
Query: 214 ---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+V PD+ VY T +DG +NG + EA K+F I N +I G CK G
Sbjct: 475 MLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGM 534
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+K A + M+ L PD TY+ +I G+ K+ A + +M + +PN
Sbjct: 535 MKDAMACINR-MKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN 588
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 64/340 (18%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-KLNVFCCDPNVITFNTL--- 64
V+L + + +P + +I+ G + +A L+ L + P+VI N+L
Sbjct: 115 VVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLLNM 174
Query: 65 ------ALVALNLFEEM--VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------Q 106
+A L++EM ++ G C + TC ++ GLCK+G + + Q
Sbjct: 175 LVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCI-MVKGLCKEGKLEEGRKLIEDRWGQ 233
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCL-LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G P+++ N + D K G ME AN L +E+ + KG
Sbjct: 234 GCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKL----------------------KGFL 271
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
V +Y +ING+CK + + L EM S G+ + YNT+
Sbjct: 272 PTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTI---------------- 315
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
ID YK+G +++A++ + C I T N LI G C+ G++ A + +
Sbjct: 316 -IDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQAL-GK 373
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P+ +Y +IH +CK+G + +A+ L++M E G +P+
Sbjct: 374 GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPD 413
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 126/314 (40%), Gaps = 94/314 (29%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P +V +N++IKG C G + +A ++ P+ T++T+ V A +
Sbjct: 517 PGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKM 576
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EMV + CKP+VVT T++I+G C+ G M G+ P+VVT +++ +
Sbjct: 577 FREMVK---MKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGS 633
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------AWWSKGCRHDVYSYNILI 175
K+ K+ +A E M+ PN T+N L++GF A KG ++ +
Sbjct: 634 FCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFL 693
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
N + + M+S+G + YN++ +
Sbjct: 694 NFFGR-------------MISDGWAPRSAAYNSILI------------------------ 716
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
CL C+ G + A + + M + G PD V++
Sbjct: 717 ------------------------CL----CQYGMFRTALQLSNK-MTSKGCIPDSVSFV 747
Query: 296 IMIHGFCKEGQHQK 309
++HG C EG+ ++
Sbjct: 748 ALLHGVCLEGRSKE 761
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 50/195 (25%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
+ M C PN+VT+ SLI G C +G + + ++F+++ PNV+T++ L
Sbjct: 581 VKMKC-KPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAK 639
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSK 124
+ A + FEEM+ C P+ VT +++G K+G T +S+
Sbjct: 640 LIDAASFFEEMLMN---KCVPNDVTFNYLVNGFSKNG-----------------TRAISE 679
Query: 125 DGKMEEANC------LLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGC 164
G + N MI P + YN+++ + SKGC
Sbjct: 680 KGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGC 739
Query: 165 RHDVYSYNILINGYC 179
D S+ L++G C
Sbjct: 740 IPDSVSFVALLHGVC 754
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 31/176 (17%)
Query: 13 RILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------- 64
R + +C PN+VT++ LI C E ++++AA F+++ + C PN +TFN L
Sbjct: 613 REMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKN 672
Query: 65 ALVAL----NLFEE-----MVNEFGVICK----PDVVTCTNIIDGLCKDGF--------- 102
A+ N F+E +N FG + P +I+ LC+ G
Sbjct: 673 GTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSN 732
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M +G PD V+ + + +G+ +E ++ + Y++++D +
Sbjct: 733 KMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNERELQIAVNYSSILDQY 788
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 153/350 (43%), Gaps = 51/350 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
+F +IKG C G ++ RL L F PNV+ + TL ++A NLF +M
Sbjct: 160 SFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKM 219
Query: 76 VNEFGVICKP---DVVTCTNIIDGLCKDGFMMDQGMR-----PDVVTLNVMTDNLSKDGK 127
+ G++ P V+ GL ++GF M + M+ P+ N + G
Sbjct: 220 -DRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGM 278
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNI 173
+++A + M ++ + TYN L+ G K G ++ +YNI
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV----------------- 216
LING+C ++ AV L ++ S G+ TYNTL + V
Sbjct: 339 LINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 217 -PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P YT ID + + +A ++ S + V + T + LI GLC G +K A
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L + L P+ V YN MIHG+CKEG +A LL +M +G+ PN
Sbjct: 459 KLFKSLGEM-HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPN 507
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 128/291 (43%), Gaps = 52/291 (17%)
Query: 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI 82
++T+N LI GLC + EA +L K+N PN++T+N L +N F +
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNIL-----------INGFCDV 346
Query: 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
K D T + + L G+ P +VT N + SK + A L++ M +R
Sbjct: 347 GKMD--TAVRLFNQL------KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERC 398
Query: 143 VNPNTCTYNTLMDGFA---WWSKGCRH-----------DVYSYNILINGYCKDRNVEDAV 188
+ P+ TY L+D FA + K C DVY+Y++LI+G C N+++A
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEAS 458
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L + + ++ P+S +Y T I G K G A+++ + + +
Sbjct: 459 KLFKS-----------------LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVH 501
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
V + + I LC+ + K A ++ M N GL P V Y M+H
Sbjct: 502 SGMVPNVASFCSTIGLLCRDEKWKEA-ELLLGQMINSGLKPSVSLYK-MVH 550
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 98/222 (44%), Gaps = 36/222 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
+PN+VT+N LI G C G++ A RLF +L P ++T+NTL AL
Sbjct: 329 LSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGAL 388
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNVMT 119
+L +EM P VT T +ID + M G+ PDV T +V+
Sbjct: 389 DLVKEMEER---CIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------------- 166
L G M+EA+ L + + + + PN+ YNT++ G+ R
Sbjct: 446 HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMV 505
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+V S+ I C+D ++A L +M++ G++ + Y
Sbjct: 506 PNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYK 547
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
QG++ +++ + ++L G + +A L+ +I + P++ F C
Sbjct: 32 QGLQHTSHSISFILNHLLSSGMLPQAQSLILRLISGRI-PSSLMLQLTQAHFT----PCL 86
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
Y+ ++N Y + + A++ M+ EG + T+N L +
Sbjct: 87 TYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWI 146
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ V D++ + I G + G+ ++ ++ + + + LIDG CK
Sbjct: 147 FNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKY 206
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +A ++F M GL P+ TY+++++GF K+G ++ + +M+ +G+ PN
Sbjct: 207 GNVMLAKNLF-CKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPN 262
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 22/115 (19%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALV 67
S P++ T++ LI GLC G + EA++LFK L PN + +NT+ +
Sbjct: 432 SGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYR 491
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDV 112
AL L EMV+ G++ P+V + + I LC+D G M++ G++P V
Sbjct: 492 ALRLLNEMVHS-GMV--PNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSV 543
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 13/199 (6%)
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
EA L++ M++ +NT +G +H +S + ++N + A
Sbjct: 5 HEALILIQKMVKVPPTKALLLFNTAT------YQGLQHTSHSISFILNHLLSSGMLPQAQ 58
Query: 189 SLCREMLSEGIRADATTYNTL--FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
SL ++S I + T F P +Y T ++ + +A+ +
Sbjct: 59 SLILRLISGRIPSSLMLQLTQAHFTPCLTYTP---LYDTIVNAYVHSHSTDQALTFLHHM 115
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ V T N L+ L + AW IF+ L L D ++ IMI G C+ G
Sbjct: 116 IHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVL--DAYSFGIMIKGCCEAGY 173
Query: 307 HQKANGLLLDMEETGLEPN 325
K LL +EE GL PN
Sbjct: 174 FVKGFRLLAMLEEFGLSPN 192
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 151/322 (46%), Gaps = 53/322 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEM 75
TFN LI+GLC G+ +A L ++ F C P+++T+NTL A +F+++
Sbjct: 208 TFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDV 267
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKD 125
+ G C PDVVT T++I G CK G M + G+ P VT NV+ D +K
Sbjct: 268 KSSSG--CSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKA 325
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSY 171
G+M A + MI P+ T+ +L+D GF W ++G + ++Y
Sbjct: 326 GEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTY 385
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+ILIN CK+ + A RE+L + +A ++ P +Y IDG
Sbjct: 386 SILINALCKENRLLKA----RELLGQ-------------LASKDIIPQPFMYNPVIDGFC 428
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G V EA+ + + KC T LI G C GR+ A IFH ++ G +PD
Sbjct: 429 KAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA-IGCSPDK 487
Query: 292 VTYNIMIHGFCKEGQHQKANGL 313
+T + ++ K G ++A L
Sbjct: 488 ITVSSLLSCLLKAGMAKEAYHL 509
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 34/223 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEE 74
+P++VT+ S+I G C G++ EA+ L + P +TFN L ++ EE
Sbjct: 274 SPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEE 333
Query: 75 MVNE---FGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDN 121
+ + FG C PDVVT T++IDG C+ GF M +GM P+ T +++ +
Sbjct: 334 IRGKMISFG--CFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINA 391
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K+ ++ +A LL + +D+ P YN ++DGF K C+ D
Sbjct: 392 LCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPD 451
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
++ ILI G+C + +AVS+ +M++ G D T ++L
Sbjct: 452 KITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLL 494
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 102/230 (44%), Gaps = 33/230 (14%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D T N++ L GK E+A LL M P+ TYNTL+ GF
Sbjct: 205 DTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMF 264
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
S GC DV +Y +I+GYCK +++A L +ML GI T+N L
Sbjct: 265 DDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVL------ 318
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
+DG K G + A ++ + + C + T LIDG C++G++ +
Sbjct: 319 -----------VDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGF 367
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ M G+ P+ TY+I+I+ CKE + KA LL + + P
Sbjct: 368 RLWEE-MNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQ 416
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 104/231 (45%), Gaps = 33/231 (14%)
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH- 166
+R T N++T +L K G + A + E M ++PN+ L+ FA KG H
Sbjct: 99 IRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFA--EKGKLHC 156
Query: 167 ----DVYSY---------NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ SY N L+N K VEDA+ L E L D T+N L
Sbjct: 157 ATALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNIL---- 212
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I GL G +A+++ + C+ I T N LI G CK LK
Sbjct: 213 -------------IRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKK 259
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A ++F + + G +PDVVTY MI G+CK G+ Q+A+ LL DM G+ P
Sbjct: 260 ANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYP 310
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 102/254 (40%), Gaps = 32/254 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL----EV----MIQRDVNPNTCTYNTLM 154
M G+ P+ L + + ++ GK+ A LL EV M+ + + +
Sbjct: 129 MKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDRVE 188
Query: 155 DGFAWWSKGCR----HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
D + + R +D ++NILI G C E AV L M G D TYNTL
Sbjct: 189 DAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLI 248
Query: 211 MAI-------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+ PD YT+ I G K G + EA + +
Sbjct: 249 KGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGI 308
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
T T N L+DG K G + A +I M + G PDVVT+ +I G+C+ GQ +
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMHTAEEI-RGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGF 367
Query: 312 GLLLDMEETGLEPN 325
L +M G+ PN
Sbjct: 368 RLWEEMNARGMFPN 381
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
I CF P++VTF SLI G C G++ + RL++++N PN T++ L AL N
Sbjct: 339 ISFGCF-PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENR 397
Query: 72 FEEMVNEFGVICKPDVVT----CTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
+ G + D++ +IDG CK G M + +PD +T +
Sbjct: 398 LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTI 457
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+ G+M EA + M+ +P+ T ++L+
Sbjct: 458 LIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLS 495
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + V++ + P+ +TF LI G C +GR+ EA +F K+ C P+ IT
Sbjct: 431 GKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITV 490
Query: 62 NTL 64
++L
Sbjct: 491 SSL 493
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 178/395 (45%), Gaps = 76/395 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL + PN V +N+++ C EGR ++ +L +K+ P+++TF
Sbjct: 196 GLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTF 255
Query: 62 NTL---------ALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----Q 106
N+ L A +F +M ++E+ + +P+ +T ++ G CK G + D +
Sbjct: 256 NSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFE 315
Query: 107 GMRP--DVVTL---NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+R D+V+L N+ L + GK EA +L+ MI + + P+ +YN LMDG
Sbjct: 316 SIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLG 375
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G D +Y L++GYC V+ A SL +EM+ +A T N
Sbjct: 376 MLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCN 435
Query: 208 TLFMAINNVPP------------------DSHVYTTYIDGLYKNGFVLEAMKVF------ 243
L ++ N+ D+ +DGL +G + +A+++
Sbjct: 436 ILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH 495
Query: 244 --SAIGN---------------HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+A+GN + C+ + T + L++GLCK GR A +F +M
Sbjct: 496 GSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMM-GEK 554
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
L PD + YNI IH FCK+G+ A +L DME+ G
Sbjct: 555 LQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/419 (25%), Positives = 160/419 (38%), Gaps = 117/419 (27%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P TFN LI+ LC + A LF ++ C PN TF L L
Sbjct: 144 SPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLE 203
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L M FGV+ P+ V I+ C++G M ++G+ PD+VT N
Sbjct: 204 LLNSM-ESFGVL--PNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRIS 260
Query: 121 NLSKDGKMEEANCLLEVMIQRDV----NPNTCTYNTLMDGF------------------- 157
L K+GK+ +A+ + M + PN+ TYN ++ GF
Sbjct: 261 ALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREN 320
Query: 158 ----------AWWSKGCRH--------------------DVYSYNILINGYCKDRNVEDA 187
W RH +YSYNIL++G CK + DA
Sbjct: 321 DDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDA 380
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
++ M G+ DA TY L M NN P+++ +
Sbjct: 381 KTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHS 440
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH---------- 279
L+ G + EA ++ + L TCN ++DGLC G L A +I
Sbjct: 441 LWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAAL 500
Query: 280 -------------MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L++N L PD++TY+ +++G CK G+ +A L +M L+P+
Sbjct: 501 GNLGNSYIGLVDDSLIENNCL-PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPD 558
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/438 (23%), Positives = 171/438 (39%), Gaps = 119/438 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPN 57
GR L+ ++ P++VTFNS I LC EG++L+A+R+F + + PN
Sbjct: 231 GRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPN 290
Query: 58 VITFNTL---------------------------ALVALNLFEEMVNEFGVICK------ 84
IT+N + +L + N++ + + G +
Sbjct: 291 SITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLK 350
Query: 85 --------PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDG 126
P + + ++DGLCK G + D G+ PD VT + G
Sbjct: 351 QMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVG 410
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS----------------KGCRHDVYS 170
K++ A LL+ M++ + PN T N L+ + W+ KG D +
Sbjct: 411 KVDAAKSLLQEMMRNNCLPNAYTCNILL--HSLWNMGRISEAEELLRKMNEKGYGLDTVT 468
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRA-----------------------DATTYN 207
NI+++G C ++ A+ + + M G A D TY+
Sbjct: 469 CNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + PDS Y +I K G + A +V +
Sbjct: 529 TLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKK 588
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQH 307
C ++ET N LI GL G ++I ++ M+ G++P++ TYN I C+ G+
Sbjct: 589 GCHKSLETYNSLILGL---GIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKV 645
Query: 308 QKANGLLLDMEETGLEPN 325
+ A LL +M + + PN
Sbjct: 646 EDATNLLDEMMQKNIAPN 663
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 148/386 (38%), Gaps = 92/386 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S ++G + + +P+ VT+ L+ G C+ G++ A L +++ C PN T
Sbjct: 374 LGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYT 433
Query: 61 FNTLALVALNL-----FEEMV---NEFGVICKPDVVTCTNIIDGLCKDGFM-----MDQG 107
N L N+ EE++ NE G D VTC I+DGLC G + + +G
Sbjct: 434 CNILLHSLWNMGRISEAEELLRKMNEKGYGL--DTVTCNIIVDGLCGSGELDKAIEIVKG 491
Query: 108 MR----------------------------PDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
MR PD++T + + + L K G+ EA L M+
Sbjct: 492 MRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMM 551
Query: 140 QRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ P D +YNI I+ +CK + A + ++M +G
Sbjct: 552 GEKLQP---------------------DSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590
Query: 200 RADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
TYN+L + + + P+ Y T I L + G V +A
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATN 650
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM----QNPGLTPDVVTYNIM 297
+ + + + LI CK+ +A ++F + Q GL Y++M
Sbjct: 651 LLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGL------YSLM 704
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLE 323
+ GQ KA LL + + G E
Sbjct: 705 FNELLAAGQLLKATELLEAVLDRGFE 730
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 37/253 (14%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------- 161
+P + NV+ ++ ++ ++E + L + M+ ++P T T+N L+ S
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168
Query: 162 -------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
KGC+ + +++ IL+ GYCK + + L M S G+ + YNT+
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFC 228
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + PD + + I L K G VL+A ++FS + + +
Sbjct: 229 REGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 257 ----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T N ++ G CK+G L+ A +F + +N L + +YNI + G + G+ +A
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLV-SLQSYNIWLQGLVRHGKFIEAET 347
Query: 313 LLLDMEETGLEPN 325
+L M + G+ P+
Sbjct: 348 VLKQMIDKGIGPS 360
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR S LL ++ + + VT N ++ GLC G + +A + K + V
Sbjct: 444 MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH----GSAA 499
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
L + L ++ + E C PD++T + +++GLCK G MM + ++P
Sbjct: 500 LGNLGNSYIGLVDDSLIENN--CLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQP 557
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D + N+ + K GK+ A +L+ M ++ + + TYN+L+ G
Sbjct: 558 DSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLM 617
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG ++ +YN I C+ VEDA +L EM+ + I + ++ L A V
Sbjct: 618 DEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKV 677
Query: 217 PP---DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P V+ T + S G + + ++ + + L G+L
Sbjct: 678 PDFDMAQEVFETAV----------------SICGQKEGLYSL-----MFNELLAAGQLLK 716
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A ++ ++ + G Y ++ CK+ + + A+G+L M + G
Sbjct: 717 ATELLEAVL-DRGFELGTFLYKDLVVSLCKKDELEVASGILHKMIDKG 763
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 128/325 (39%), Gaps = 73/325 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++ P+ + +N I C +G+I A R+ K + C ++ T+
Sbjct: 538 GRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N+L L G+ K + ++D M ++G+ P++ T N
Sbjct: 598 NSLIL-------------GLGIKNQIFEIHGLMDE------MREKGISPNICTYNTAIQY 638
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK- 180
L + GK+E+A LL+ M+Q+++ PN V+S+ LI +CK
Sbjct: 639 LCEGGKVEDATNLLDEMMQKNIAPN---------------------VFSFKYLIGAFCKV 677
Query: 181 ------DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
E AVS+C + EG+ Y+ + L G
Sbjct: 678 PDFDMAQEVFETAVSICGQ--KEGL-----------------------YSLMFNELLAAG 712
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+L+A ++ A+ + L L+ LCK L++A I H ++ + G D
Sbjct: 713 QLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGILHKMI-DKGYGFDPAAL 771
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEE 319
+I G K G ++AN M E
Sbjct: 772 MPVIDGLGKMGNKKEANNFAEKMME 796
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 157/353 (44%), Gaps = 59/353 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
TFN +++ LC+ G+ A L +++ PN +T+NT+ AL++ E
Sbjct: 484 TTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMRE 539
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDNLS 123
M G+ P+ T +I G CK G M+ +G ++P+ V N +
Sbjct: 540 MRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 597
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS---------KGCRHDVY 169
GK++ A + M++R V TYN L MDG + KG DV+
Sbjct: 598 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 657
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+YNILING+CK+ NV+ A+ + M G+RA TY L A++
Sbjct: 658 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 717
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD +Y I+ +G + A ++ + + T N L+ GLC +GR+
Sbjct: 718 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 777
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + + + G+ PD+VTYN +I G+ +G + A + +M G P
Sbjct: 778 DEARKLIDEMTER-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 829
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 158/364 (43%), Gaps = 55/364 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLAL------ 66
+L PN VT+N++I G C+ GR+ A + +++ PN T+ T+
Sbjct: 505 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 564
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A+ +F+EM+ + V KP+ V +I G C G M+++G+ V
Sbjct: 565 RVDEAVKVFDEMLTKGEV--KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 622
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWW 160
T N++ L DG+ EA L+E M + + P+ TYN L++G F
Sbjct: 623 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 682
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
S+ G R V +Y LI K V++ L E + GIR D YN L
Sbjct: 683 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 742
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PD Y T + GL G V EA K+ + + T N L
Sbjct: 743 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 802
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G G +K A I + +M N G P ++TYN +I G CK GQ A ++ +M E G
Sbjct: 803 ISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 861
Query: 322 LEPN 325
+ P+
Sbjct: 862 ITPD 865
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + L+ + P++ T+N LI G C EG + +A +F+ ++ V+T+
Sbjct: 635 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 694
Query: 62 NTLALVALN----------LFEEMVNEFGVICKPDVV----------TCTNIIDGLCKDG 101
L + AL+ LF+E V G+ +PD+V T NI G
Sbjct: 695 TAL-IYALSKKGQVQETDKLFDEAVRR-GI--RPDLVLYNALINSHSTSGNIDRAFEIMG 750
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-- 159
M + + PD VT N + L G+++EA L++ M +R + P+ TYNTL+ G++
Sbjct: 751 EMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKG 810
Query: 160 ------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KG + +YN LI G CK+ +DA ++ +EM+ GI D +TY
Sbjct: 811 DVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 870
Query: 208 TLF 210
+L
Sbjct: 871 SLI 873
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 54/281 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
G+ + R++ + T+N L+ L +GR EA L +++ P+V T
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N L AL +FE M + GV + VVT T +I L K G + +
Sbjct: 659 YNILINGHCKEGNVKKALEIFENM-SRRGV--RATVVTYTALIYALSKKGQVQETDKLFD 715
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G+RPD+V N + ++ S G ++ A ++ M ++ + P+ TYNTLM G
Sbjct: 716 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 775
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G + D+ +YN LI+GY +V+DA+ + EM+++G TYN
Sbjct: 776 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 835
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGL 230
L M N + PD Y + I+GL
Sbjct: 836 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 157/356 (44%), Gaps = 56/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G + G+ EA L ++ P+VI +N + AL +
Sbjct: 333 PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 392
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FEEM + P+V T +ID LC++G M G+ P+V+T+N+M D
Sbjct: 393 FEEMKRD----AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDR 448
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK--GCRH--D 167
L K K+EEA + E M + PN T+++L+DG ++ + K C H
Sbjct: 449 LCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPG 508
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFM 211
Y LI + K ED + +EM+ G D T NT LF
Sbjct: 509 AIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFR 568
Query: 212 AIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
IN PD+ Y+ I GL K G E ++F A+ CVL N +IDG CK G
Sbjct: 569 EINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSG 628
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A+ + M+ G P VVTY +I G K + +A L + + G++ N
Sbjct: 629 KVNKAYQLLEE-MKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLN 683
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 159/373 (42%), Gaps = 89/373 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T N +I LC ++ EA +F+ ++ C PN +TF++L A +L
Sbjct: 437 PNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSL 496
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDN 121
+E+M++ V P + T++I K DG M+ G PD+ +N D
Sbjct: 497 YEKMLDCGHV---PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDC 553
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHD 167
+ K G+ E+ L + P+ +Y+ L+ G +A +GC D
Sbjct: 554 VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLD 613
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++YN +I+G+CK V A L EM +G PP Y + I
Sbjct: 614 THAYNAVIDGFCKSGKVNKAYQLLEEMKVKG-----------------HPPTVVTYGSVI 656
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DGL K + EA +F ++ L + + LIDG K+GR+ A+ I LMQ GL
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQK-GL 715
Query: 288 TPDV-----------------------------------VTYNIMIHGFCKEGQHQKANG 312
TP+V +TY+I+I+G C+ + KA
Sbjct: 716 TPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 775
Query: 313 LLLDMEETGLEPN 325
+M++ GL+PN
Sbjct: 776 FWQEMQKLGLKPN 788
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 155/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L P + + SLI+ GR + +++K++ C P++
Sbjct: 488 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 547
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT LF E +N G I PD + + +I GL K G
Sbjct: 548 NTYMDCVFKAGETEKGRALFRE-INAHGFI--PDARSYSILIHGLVKAGLANETYELFYA 604
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG D N + D K GK+ +A LLE M + P TY +++DG A
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 664
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G + +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 665 LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 724
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F ++ + KC T + LI+GLC++
Sbjct: 725 L-----------------LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRV 767
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G K G +A+GL + G P+
Sbjct: 768 RKFNKAF-VFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPD 823
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 54/317 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L I F P+ +++ LI GL G E LF + C + +
Sbjct: 558 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 617
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMM--- 104
N + A L EEM + P VVT ++IDGL K + +M+
Sbjct: 618 NAVIDGFCKSGKVNKAYQLLEEMKVKGH---PPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674
Query: 105 --DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G++ +VV + + D K G+++EA ++E ++Q+ + PN T+N L+D +
Sbjct: 675 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 734
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + +Y+ILING C+ R A +EM G++ + TY T
Sbjct: 735 INEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTT 794
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + N PDS Y I+GL ++A +F
Sbjct: 795 MISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 854
Query: 251 CVLTIETCNCLIDGLCK 267
C + +TC L+D L K
Sbjct: 855 CNIHTKTCVVLLDALHK 871
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 136/341 (39%), Gaps = 57/341 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ N+ F +LI+ EGR+ A L ++ D +++ +N ++
Sbjct: 226 YEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVC-----------IDC 274
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
FG K D + F M G+ PD VT M L K +++EA L E
Sbjct: 275 FGKAGKVD----------MSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFE 324
Query: 137 VMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDR 182
+ Q P YNT++ G+ +KG V +YN ++ K R
Sbjct: 325 QLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR 384
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYT 224
VE+A+ + EM + + + TYN L M + P+
Sbjct: 385 RVEEALRIFEEMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVN 443
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
ID L K + EA +F + + C T + LIDGL K GR+ A+ ++ ++ +
Sbjct: 444 IMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML-D 502
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P + Y +I F K G+ + + + +M TG P+
Sbjct: 503 CGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 543
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 20/175 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++++ ++ TPN+ T+N L+ L I EA F+ + C PN IT
Sbjct: 697 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 756
Query: 61 FNTL-----ALVALN---LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
++ L + N +F + + + G+ KP+ +T T +I GL K G +++
Sbjct: 757 YSILINGLCRVRKFNKAFVFWQEMQKLGL--KPNTITYTTMISGLAKAGNILEASGLFSR 814
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
G PD + N M + LS K +A L E + N +T T L+D
Sbjct: 815 FKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDAL 869
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 156/354 (44%), Gaps = 52/354 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++L PN VT+N+LI LCTEGR A ++F + N T+
Sbjct: 351 GKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTY 410
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMD 105
N + L ++ E+ + F + K P VVT +I K G+ M +
Sbjct: 411 NQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKE 470
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
PD T + K GK++ A M++ ++PN TY ++DG+ K
Sbjct: 471 SNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDV 530
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
GC + +YN +I+G K +A C +M +G++
Sbjct: 531 ALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQ----------- 579
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
P++ YT+ I+GL KN A K+F + C+ T LI GLC+ G++
Sbjct: 580 ------PNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKV 633
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D L +N G P + TY+ ++ G C+EG+ +A+ L+ +M+E GL P+
Sbjct: 634 ----DAAERLTEN-GCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPS 682
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 166/402 (41%), Gaps = 94/402 (23%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL----- 66
+I S P+++TFN++I LC +G++ EA +F K+ F P+ T+ +L L
Sbjct: 186 AQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRN 245
Query: 67 ----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
A +F+ MV + C P+ VT + +I+GLC +G M ++G+ P V
Sbjct: 246 RKLDKAFEVFDRMVKDG---CNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTV 302
Query: 113 VTLNV-----------------------------------MTDNLSKDGKMEEANCLLEV 137
T V + L + GKME A +
Sbjct: 303 YTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHK 362
Query: 138 MIQRDVNPNTCTYNTLMDG-------------FAWWS-KGCRHDVYSYNILINGYCKDRN 183
M++ + PNT TYN L++ F W G + +YN +I G +
Sbjct: 363 MLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDD 422
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTT 225
+E A+ + +ML +G TYNTL M +N PD Y
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE--TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I G K G + A F + KC ++ T +IDG CK G++ +A +F + +
Sbjct: 483 LISGFCKGGKLDSATSFFYEM--LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE 540
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G + + TYN +I G K + +A M E GL+PN
Sbjct: 541 N-GCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPN 581
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 49/355 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F + +FN+L+ L + A ++ ++ P+++TFNT+ L +E V
Sbjct: 158 FGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAV 217
Query: 77 NEFGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
F I + PD T T++I G C++ M+ G P+ VT + + + L
Sbjct: 218 LVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGL 277
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+G++ EA +LE M ++ + P TY + + KGC V
Sbjct: 278 CNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSV 337
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------F 210
+Y +I+G + +E A+ + +ML EG+ + TYN L +
Sbjct: 338 QTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDW 397
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + ++ Y I GL+ + +AM VF+ + T+ T N LI K G
Sbjct: 398 MEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGY 457
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +M M+ PD TY +I GFCK G+ A +M + G+ PN
Sbjct: 458 LNNATRFLYM-MKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPN 511
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 51/333 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ T+ LI G C G++ A F ++ PN T+ + VAL+L
Sbjct: 475 PDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSL 534
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDN 121
FE M E G C + T II GL K M +QG++P+ +T + +
Sbjct: 535 FERM-EENG--CSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLING 591
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------GCRHDVYSY 171
L K+ A + M +++ PN TY +L+ G K GC + +Y
Sbjct: 592 LCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTY 651
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAI 213
+ L++G C++ +A L M +G+ Y +L MA+
Sbjct: 652 STLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAV 711
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P +Y I L EA+ +F ++ + + L+DGL + G +
Sbjct: 712 KGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDL 771
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
F LM++ TP + TY I+ K G+
Sbjct: 772 CMK-FLYLMESRNCTPSLHTYIILARELSKVGK 803
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 129/298 (43%), Gaps = 49/298 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L R+ + + ++ T+N++I GL R EA + K+ PN IT+
Sbjct: 526 GKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITY 585
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ 106
NT +A +F EM + C P+ T T++I GLC++G + +
Sbjct: 586 TSLINGLCKNTATNLAFKIFHEMEKK---NCLPNAHTYTSLIYGLCQEGKVDAAERLTEN 642
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL------------- 153
G P + T + + L ++G+ EA+ L+E M ++ ++P+ Y +L
Sbjct: 643 GCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCA 702
Query: 154 MDGFAWWS-KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
++ F + KG + ++ Y +LI C E+A+++ + +L + +D
Sbjct: 703 LEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI-------- 754
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
V+T +DGL + G MK + + C ++ T L L K+G+
Sbjct: 755 ---------VWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGK 803
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 167/404 (41%), Gaps = 91/404 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAA------------------------- 43
+ G +L P +VT+N+L+ EGR EA+
Sbjct: 223 AVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVIS 282
Query: 44 ------------------RLFKKLNVFCCDPNVITFNTLALV--ALNLFEEMVNEFGVIC 83
RL KK + F +P + V A L EM NE G++
Sbjct: 283 FLAREGHLENAVKLVDSMRLSKKASSFTYNPLITALLERGFVRKAEALQMEMENE-GIM- 340
Query: 84 KPDVVTCTNIIDGL----------CKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
P VVT II GL K M G+ PDV+T N + + K G ++EA
Sbjct: 341 -PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALW 399
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
LL + + + P TYNTL+DG+ +GC DV +Y IL+NG
Sbjct: 400 LLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSR 459
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K RN+ A EMLS+G++ D YNT M + + PD+
Sbjct: 460 KVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTV 519
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y IDGL K G + +A ++ + + + T CLI C+ G L+ A + + +
Sbjct: 520 TYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGM 579
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + GL P VVTY I++H C+ G A G M + G+EPN
Sbjct: 580 VSD-GLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPN 622
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 164/364 (45%), Gaps = 71/364 (19%)
Query: 21 PNMVTFNSLIKGL--CTEGRILEAARL-FKKLNVFCCDPNVITFNTL---ALVALNLFEE 74
P +VT+N++I GL C + EAA++ F ++ P+VIT+N+L A NL E
Sbjct: 341 PTVVTYNAIIHGLLKCEQA---EAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEA 397
Query: 75 M-----VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
+ + G+ P V+T +IDG C+ G M++QG PDV T ++
Sbjct: 398 LWLLGDLRRAGL--APTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILM 455
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
+ K + A + M+ + + P+ YNT + S KG
Sbjct: 456 NGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIY 515
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D +YN++I+G CK N++DA L +M+S+G++ D TY L
Sbjct: 516 PDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKL 575
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE------TCNCL 261
M + + P YT + + G ++SA G + +L + T N L
Sbjct: 576 LNGMVSDGLQPSVVTYTILVHTCCRRG------NLYSAYGWFRKMLDVGIEPNEITYNVL 629
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I LC GR +A+ FH +++ GL P+ TY ++I G C+EG A L +M + G
Sbjct: 630 IHALCMTGRTPLAFRHFHEMLER-GLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNG 688
Query: 322 LEPN 325
+ P+
Sbjct: 689 IPPD 692
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 137/324 (42%), Gaps = 52/324 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LLG + + P ++T+N+LI G C G + EA RL +++ C P+V T+ L
Sbjct: 400 LLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSR 459
Query: 66 -----LVALNLFEEMVNE------FGV---ICKPDVVTCTNIIDGLCKDGFMMDQGMRPD 111
+A F+EM+++ F IC ++ T + L + MM +G+ PD
Sbjct: 460 KVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLRE--VMMLKGIYPD 517
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VT NV+ D L K G +++A L M+ + P+ TY L+
Sbjct: 518 TVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLN 577
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
S G + V +Y IL++ C+ N+ A R+ML GI + TYN L
Sbjct: 578 GMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL-------- 629
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
I L G A + F + T LIDG C+ G A +
Sbjct: 630 ---------IHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRL 680
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGF 301
+ + QN G+ PD T+N + GF
Sbjct: 681 YFEMHQN-GIPPDYCTHNALFKGF 703
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 127/274 (46%), Gaps = 56/274 (20%)
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNII----------DGLCKDGFMMDQGMRPD 111
+TL L A L V GV PDV C ++ D G M+ + P
Sbjct: 183 STLCLAAFRL----VTCHGV--APDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPT 236
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
+VT N + D+ K+G+ +EA+ LL+ M T GF+ +DV ++
Sbjct: 237 IVTYNTLLDSFLKEGRKDEASMLLKEM------------ETQGGGFSL------NDV-TF 277
Query: 172 NILINGYCKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
N++I+ ++ ++E+AV L M LS+ +A + TYN L I L
Sbjct: 278 NVVISFLAREGHLENAVKLVDSMRLSK--KASSFTYNPL-----------------ITAL 318
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ GFV +A + + N + T+ T N +I GL K + + A F M+ GL PD
Sbjct: 319 LERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAE-MRAMGLLPD 377
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
V+TYN +++ +CK G ++A LL D+ GL P
Sbjct: 378 VITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAP 411
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 47/236 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L +++ P+ VT+N +I GLC G + +A RL K+ P+ IT+ L
Sbjct: 502 AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIH 561
Query: 67 V---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A L MV++ G+ +P VVT T ++ C+ G M+D G
Sbjct: 562 AHCERGLLREARKLLNGMVSD-GL--QPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVG 618
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+ P+ +T NV+ L G+ A M++R + PN
Sbjct: 619 IEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNK-------------------- 658
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
Y+Y +LI+G C++ N DA+ L EM GI D T+N LF + + H+Y
Sbjct: 659 -YTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFD----EGHMY 709
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 38/220 (17%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G+ PDV N + L + ++ + M+Q V P TYNTL+D F
Sbjct: 196 HGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSF-------- 247
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
K+ ++A L +EM ++G ++N+V +
Sbjct: 248 -------------LKEGRKDEASMLLKEMETQGGG----------FSLNDV-----TFNV 279
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I L + G + A+K+ ++ K + T N LI L + G ++ A + M M+N
Sbjct: 280 VISFLAREGHLENAVKLVDSMRLSKKASSF-TYNPLITALLERGFVRKA-EALQMEMENE 337
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P VVTYN +IHG K Q + A +M GL P+
Sbjct: 338 GIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPD 377
>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 933
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 169/371 (45%), Gaps = 87/371 (23%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLALVA-----LNLF 72
++VT ++L+ GLC +GR EA LF++++ PN +T+ ++LA L+L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLL 332
Query: 73 EEMVNEFGVI---------------------------------CKPDVVTCTNIIDGLCK 99
EMV+ GV+ P+ VT T +ID LCK
Sbjct: 333 GEMVSR-GVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCK 391
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M ++ + P+VVT + + + K G +++A +M +R +NPN T
Sbjct: 392 AHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVT 451
Query: 150 YNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y TL+DGF + +G + + + + L+NG ++ +E+A++L ++
Sbjct: 452 YGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDAS 511
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
G+ D HV YTT IDGL+K G + A K + + +
Sbjct: 512 GSGLSLD------------------HVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
N I+ LC +G+ K A F M+N GL PD TYN MI C++G+ KA LL
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKS-FLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612
Query: 315 LDMEETGLEPN 325
+M+ + ++PN
Sbjct: 613 HEMKMSSIKPN 623
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+ T+N++I C +G +A +L ++ + PN+IT+NTL A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAK 644
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L EMV+ P +T ++ + +MM+ G+ D+ N +
Sbjct: 645 YLLNEMVSAG---FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLL 701
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L G +A +LE M+ + P+T T+N LI G+C
Sbjct: 702 QVLCYHGMTRKATVVLEEMLGSGIAPDTITFNA---------------------LILGHC 740
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSH 221
K ++++A + +ML + I + T+NTL + +V P++
Sbjct: 741 KSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNL 800
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y G K +EAM+++ + V + T N LI K G + A ++F
Sbjct: 801 TYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKD- 859
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ P TY+I++ G+ + + L DM+E G P+
Sbjct: 860 MQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPS 903
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 134/326 (41%), Gaps = 62/326 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + R+ ++V +N+L+ G C G++ A + + DPNV T
Sbjct: 182 VGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVAT 241
Query: 61 FNTLALVALNLFEEMVNEFGVICKPD-VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
+ + C+ V ++ +G+ ++G ++D VVTL+ +
Sbjct: 242 YTPFIVY--------------YCRTKGVEEAFDLYEGMVRNGVLLD------VVTLSALV 281
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L +DG+ EA L M + PN TY TL+D A +G
Sbjct: 282 AGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRG---------------- 325
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSH 221
++ +SL EM+S G+ D TY L F +N+ P+
Sbjct: 326 -----KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGV 380
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT ID L K V EA +V + + T + +I+G K G L A + + +
Sbjct: 381 TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE-YKRM 439
Query: 282 MQNPGLTPDVVTYNIMIHGFCK-EGQ 306
M+ G+ P+VVTY +I GF K +GQ
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQ 465
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 72/326 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
VT N+L+ GLC G++ AA L + G I
Sbjct: 136 VTVNTLLAGLCRNGQVDAAAAL------------------------------ADRGGGIH 165
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
DV+ +I G C+ G M QG+ DVV N + + G+++ A
Sbjct: 166 ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARG 225
Query: 134 LLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYSYNILINGYC 179
+L++M + V+PN TY + + F + R+ DV + + L+ G C
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+D +A +L REM G P+ Y T ID L K G E
Sbjct: 286 RDGRFSEAYALFREMDKVG-----------------AAPNHVTYCTLIDSLAKAGRGKEL 328
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + V+ + T L+D L K G+ D + + L+P+ VTY ++I
Sbjct: 329 LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD-NLSPNGVTYTVLID 387
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
CK +A +LL+MEE + PN
Sbjct: 388 ALCKAHNVDEAEQVLLEMEEKSISPN 413
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 157/408 (38%), Gaps = 120/408 (29%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+PN+VTF+S+I G G + +A + + +PNV+T+ TL AL
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469
Query: 70 NLFEEM------VNEF--------------------------GVICKPDVVTCTNIIDGL 97
++ +M VN+F G D V T +IDGL
Sbjct: 470 EVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGL 529
Query: 98 CKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANC-------------- 133
K G M MD+ M PD V NV + L GK +EA
Sbjct: 530 FKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQ 589
Query: 134 ---------------------LLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
LL M + PN TYNTL+ G
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNE 649
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
S G ++ ++ + R ++ + + M++ G+ AD T YNTL +
Sbjct: 650 MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVL----- 704
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
Y K VLE M +G+ TI T N LI G CK L A+ +
Sbjct: 705 ------CYHGMTRKATVVLEEM-----LGSGIAPDTI-TFNALILGHCKSSHLDNAFATY 752
Query: 279 -HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
ML QN ++P++ T+N ++ G G+ +A +L++ME++GLEPN
Sbjct: 753 AQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 140/351 (39%), Gaps = 58/351 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL + MS PN++T+N+L+ GL G + +A L ++ P+ +T
Sbjct: 603 GETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ V L++ E M+N D+ ++ LC G
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAG---LHADITVYNTLLQVLCYHGMTRKATVVLEE 719
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +T N + K ++ A M+ ++++PN T+NTL+ G +
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGR 779
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + +Y+IL G+ K N +A+ L EM+ +G +TYN
Sbjct: 780 IGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNA 839
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I K G + +A ++F + T T + L+ G
Sbjct: 840 L-----------------ISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS-- 880
Query: 269 GRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ ++ L M+ G +P T + + F K G +A LL ++
Sbjct: 881 -RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
D S N L+ +C+ R + A++L R R YN L A+++
Sbjct: 72 DPASLNALLYSHCRLRLLRPAIALLRSS-----RPTTVAYNILLAALSDHAHAPAVLAEM 126
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
VP D T + GL +NG V +A + G L + N LI G C++G
Sbjct: 127 CKRGVPFDGVTVNTLLAGLCRNGQV-DAAAALADRGGGIHALDVIGWNTLIAGYCRVGDT 185
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M GL DVV YN ++ GFC+ GQ A G+L M+E G++PN
Sbjct: 186 PAALSVADR-MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPN 238
>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 487
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 168/386 (43%), Gaps = 93/386 (24%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
+ LL R+ + +P++VT+NSLI G +LE+ LF ++ P+V ++NTL
Sbjct: 90 AAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLM 149
Query: 66 LVALNLFE-EMVNE-----FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
L + E NE FG P T +I+GLCK+GF + G
Sbjct: 150 HCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFV 209
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM--------------- 154
P ++T N++ + L KD ++ A +L+ + PN TY T+M
Sbjct: 210 PQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEI 269
Query: 155 -----------DGFAWWS-----------------------KGCRHDVYSYNILINGYCK 180
DGFA+ + G HD+ SYN LIN YCK
Sbjct: 270 LQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCK 329
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA- 239
N+E A L E+ EG++ D T+ L I+ + K G +L A
Sbjct: 330 QGNLEAAYQLLDEIEKEGLQCDEYTHTIL-----------------INWMCKAGNILGAR 372
Query: 240 --MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
M+ + +G C++ + NC++DGLCK G++ A +F + D TY+ +
Sbjct: 373 RHMQHMNMMGFDSCLVAL---NCMVDGLCKNGQIDHAVKLFESMKMR-----DSFTYSSL 424
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLE 323
+H CK G+ +A+ LLL +G++
Sbjct: 425 VHNLCKNGRFHRASKLLLSCLRSGMK 450
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 39/243 (16%)
Query: 93 IIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT 152
IIDG+ G+ PDVVT N + D S+ A LL M + ++P+ TYN+
Sbjct: 60 IIDGI-------RLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNS 112
Query: 153 LMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
L+ G A + G DV+SYN L++ + K E+A + R++ G
Sbjct: 113 LIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHG 172
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ TT+N + I+GL KNGF A+ +F ++ H V + T
Sbjct: 173 LSPCPTTFNIM-----------------INGLCKNGFTSNALMLFRSLKQHGFVPQLITY 215
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+GLCK RL+ A + L + G P+ +TY ++ + + ++ +L +M
Sbjct: 216 NILINGLCKDRRLRAARSMLKEL-ETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMI 274
Query: 319 ETG 321
+ G
Sbjct: 275 DKG 277
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------- 160
R LN+ +L K ++ +A ++ I+ V P+ TYNTL+D ++ +
Sbjct: 34 RLSTRLLNISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYS 93
Query: 161 ------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
DV +YN LI G ++ + ++++L EML+ GI D +YNTL
Sbjct: 94 LLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLM---- 149
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
H + +K G EA +V I H T N +I+GLCK G A
Sbjct: 150 ------HCF-------FKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNA 196
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F L Q+ G P ++TYNI+I+G CK+ + + A +L ++E +G PN
Sbjct: 197 LMLFRSLKQH-GFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPN 246
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 157/353 (44%), Gaps = 59/353 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
TFN +++ LC+ G+ A L +++ PN +T+NT+ AL++ E
Sbjct: 489 TTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMRE 544
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG-MRPDVVTLNVMTDNLS 123
M G+ P+ T +I G CK G M+ +G ++P+ V N +
Sbjct: 545 MRERGGI--APNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 602
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS---------KGCRHDVY 169
GK++ A + M++R V TYN L MDG + KG DV+
Sbjct: 603 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 662
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
+YNILING+CK+ NV+ A+ + M G+RA TY L A++
Sbjct: 663 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEA 722
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD +Y I+ +G + A ++ + + T N L+ GLC +GR+
Sbjct: 723 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 782
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A + + + G+ PD+VTYN +I G+ +G + A + +M G P
Sbjct: 783 DEARKLIDEMTER-GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNP 834
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 158/364 (43%), Gaps = 55/364 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLAL------ 66
+L PN VT+N++I G C+ GR+ A + +++ PN T+ T+
Sbjct: 510 LLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVG 569
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A+ +F+EM+ + V KP+ V +I G C G M+++G+ V
Sbjct: 570 RVDEAVKVFDEMLTKGEV--KPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA 627
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWW 160
T N++ L DG+ EA L+E M + + P+ TYN L++G F
Sbjct: 628 TYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENM 687
Query: 161 SK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
S+ G R V +Y LI K V++ L E + GIR D YN L
Sbjct: 688 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 747
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PD Y T + GL G V EA K+ + + T N L
Sbjct: 748 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTL 807
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G G +K A I + +M N G P ++TYN +I G CK GQ A ++ +M E G
Sbjct: 808 ISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 866
Query: 322 LEPN 325
+ P+
Sbjct: 867 ITPD 870
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + L+ + P++ T+N LI G C EG + +A +F+ ++ V+T+
Sbjct: 640 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTY 699
Query: 62 NTLALVALN----------LFEEMVNEFGVICKPDVV----------TCTNIIDGLCKDG 101
L + AL+ LF+E V G+ +PD+V T NI G
Sbjct: 700 TAL-IYALSKKGQVQETDKLFDEAVRR-GI--RPDLVLYNALINSHSTSGNIDRAFEIMG 755
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-- 159
M + + PD VT N + L G+++EA L++ M +R + P+ TYNTL+ G++
Sbjct: 756 EMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKG 815
Query: 160 ------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+KG + +YN LI G CK+ +DA ++ +EM+ GI D +TY
Sbjct: 816 DVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYI 875
Query: 208 TLF 210
+L
Sbjct: 876 SLI 878
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 54/281 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
G+ + R++ + T+N L+ L +GR EA L +++ P+V T
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 663
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+N L AL +FE M + GV + VVT T +I L K G + +
Sbjct: 664 YNILINGHCKEGNVKKALEIFENM-SRRGV--RATVVTYTALIYALSKKGQVQETDKLFD 720
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G+RPD+V N + ++ S G ++ A ++ M ++ + P+ TYNTLM G
Sbjct: 721 EAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLG 780
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G + D+ +YN LI+GY +V+DA+ + EM+++G TYN
Sbjct: 781 RVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYN 840
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGL 230
L M N + PD Y + I+GL
Sbjct: 841 ALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 153/350 (43%), Gaps = 52/350 (14%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
+VL + + TFN +I LC EG++ +A + PNV+T+NT+
Sbjct: 221 WVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHG 280
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ + +++ GV +PD T ++I G+CK G M + G+
Sbjct: 281 YCSRGRVEGARMVLDIMKNRGV--EPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLL 338
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P VT N + D G + +A + M++R + P TYN L+ K
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGM 398
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G D +YNILINGYC+ N + A +L EM+S+GI+ TY +L
Sbjct: 399 IKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI----- 453
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
Y+ L K + A +F I + N LIDG C G L A+
Sbjct: 454 ----------YV--LSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAF 501
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M + PD VTYN ++ G C+EG+ ++A LL +M+ G+ P+
Sbjct: 502 ALLKE-MDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPD 550
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 156/359 (43%), Gaps = 58/359 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G ++L + P+ T+ SLI G+C G++ EA+ + +K+ P +T+
Sbjct: 285 GRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNII------------DGLCKD 100
NTL + A +EMV P V T +I DG+ KD
Sbjct: 345 NTLIDGYCNKGDLVKAFGYRDEMVRR---AILPTVSTYNLLIHALFLEGKMDEADGMIKD 401
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M D G+ PD +T N++ + + G ++A L + MI + + P TY +L+ +
Sbjct: 402 --MGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKR 459
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
++ G D+ +N LI+G+C + N++ A +L +EM I D TY
Sbjct: 460 NRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTY 519
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NTL + G + G V EA ++ + + N LI G
Sbjct: 520 NTL-----------------MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYS 562
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A+ I ++ + G P ++TYN +I G CK Q A LL +M G+ P+
Sbjct: 563 KRGDINDAFTIRDEML-SIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD 620
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 36/239 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
S P+ +T+N LI G C G +A L ++ P ++T+ +L V
Sbjct: 405 SGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKA 464
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMRPDVVTLNV 117
A +LFE+++ E PD++ +IDG C +G + MD+ + PD VT N
Sbjct: 465 ADDLFEKIIREG---ASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNT 521
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKG 163
+ ++GK+EEA LL+ M +R + P+ +YNTL+ G++ S G
Sbjct: 522 LMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIG 581
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+ +YN LI G CK++ + A L +EM+S+GI D +TY +L I V S
Sbjct: 582 FNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 67/271 (24%)
Query: 103 MMDQGMRPD-----------------------------------VVTLNVMTDNLSKDGK 127
M ++G+ P V T N+M + L K+GK
Sbjct: 192 MKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGK 251
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+++A + M V PN TYNT++ G+ ++G D Y+Y
Sbjct: 252 LKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI+G CK +E+A + +M G+ A TYNTL IDG
Sbjct: 312 LISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTL-----------------IDGYCNK 354
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G +++A + + T+ T N LI L G++ A D M + G+ PD +T
Sbjct: 355 GDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEA-DGMIKDMGDSGIVPDSIT 413
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YNI+I+G+C+ G +KA L +M G++P
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQP 444
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 26/159 (16%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYN---TLFMAINNVPPDSHVYTTY 226
+++LI C+ + +DA C +M+ E G+ T+N +LF+ +N T +
Sbjct: 169 FDMLIRACCELKRGDDAFE-CFDMMKEKGVVPKIETFNAMLSLFLKLNQTE------TVW 221
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ LY F L K T+ T N +I+ LCK G+LK A D F M+N G
Sbjct: 222 V--LYAEMFRL------------KIKSTVYTFNIMINVLCKEGKLKKAKD-FIGSMENLG 266
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTYN +IHG+C G+ + A +L M+ G+EP+
Sbjct: 267 VKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPD 305
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + P+ VT+N+L++G C EG++ EA L K++ P+ I++
Sbjct: 495 GNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISY 554
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL G + D+ I D + GF P ++T N +
Sbjct: 555 NTLI-------------SGYSKRGDINDAFTIRDEMLSIGF------NPTLLTYNALIQG 595
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
L K+ + + A LL+ M+ + + P+ TY +L++G
Sbjct: 596 LCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIG 632
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 163/385 (42%), Gaps = 79/385 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
P+ T+ LI+ LC GR+ +A L + C PNV+T+ L A+ + FE+ +
Sbjct: 140 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMA 199
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLS 123
+ C P++VT II+G+C++G + D G +PD V+ + L
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLC 259
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
+ ++ L M++++ PN T++ L+ F GC +
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTT 319
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
NI+IN CK V+DA L +M S G D +Y T+ M
Sbjct: 320 LCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
NN PP+ + T+I L + G + +A+ + + H C + + T N L++G C G +
Sbjct: 380 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHI 439
Query: 272 KIAWDIFHMLMQNP----------GL---------------------TPDVVTYNIMIHG 300
A ++F + P GL P+VVT+N+++
Sbjct: 440 DSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSF 499
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FC++G ++A L+ M E G PN
Sbjct: 500 FCQKGFLEEAIELVEQMMEHGCTPN 524
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 166/375 (44%), Gaps = 58/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL R+ F P+ V++ +L+KGLC R + LF ++ C PN +TF
Sbjct: 227 GRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTF 286
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+ L A+ + E+M E G C + C +I+ +CK G + D
Sbjct: 287 DMLIRFFCRGGMVERAIQVLEQMT-EHG--CATNTTLCNIVINSICKQGRVDDAFKLLND 343
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGF 157
G PD ++ + L + + ++A LL M++ + PN T+NT + G
Sbjct: 344 MGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGL 403
Query: 158 AWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ GC V +YN L+NG+C +++ A+ L R M + + TY T
Sbjct: 404 IEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTT 460
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + N PP+ + + + GF+ EA+++ + H
Sbjct: 461 LLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + T N L+DG+ K + A ++ H L+ G++PDV+T++ +I KE + ++A
Sbjct: 521 CTPNLITYNTLLDGITKDCSSEDALELLHGLVSK-GVSPDVITFSSIIGILSKEDRIEEA 579
Query: 311 NGLLLDMEETGLEPN 325
L +++ G+ P
Sbjct: 580 VQLFHVVQDIGMRPK 594
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 140/339 (41%), Gaps = 57/339 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEE 74
P++ LI+ LC GR +AAR+ + +V +NTL L+
Sbjct: 73 APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARR 132
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
++ V PD T T +I LC G M+ +G +P+VVT V+ + + +
Sbjct: 133 LIGSMPV--APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
+ E+A +L+ M + PN + +YN++ING C++ V
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPN---------------------IVTYNVIINGMCREGRV 229
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+DA L + S G + D +Y TL M N P+ +
Sbjct: 230 DDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDML 289
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I + G V A++V + H C CN +I+ +CK GR+ A+ + + M + G
Sbjct: 290 IRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLND-MGSYG 348
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD ++Y ++ G C+ + A LL +M PN
Sbjct: 349 CNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPN 387
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 137/305 (44%), Gaps = 56/305 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL ++ + PN VTFN+ I LC +G I +A L ++++ C V+T+N L
Sbjct: 375 LLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFC 434
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQGMRP 110
AL LF M CKP+ +T T ++ GLC DG M+ P
Sbjct: 435 VQGHIDSALELFRSMP------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPP 488
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+VVT NV+ + G +EEA L+E M++ PN TYNTL+DG
Sbjct: 489 NVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELL 548
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SKG DV +++ +I K+ +E+AV L + G+R A YN + +
Sbjct: 549 HGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILL----- 603
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
GL K + A+ F+ + ++ C+ T LI+GL G LK A D
Sbjct: 604 ------------GLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQD 651
Query: 277 IFHML 281
+ +L
Sbjct: 652 LLSVL 656
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 37/217 (17%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-------- 67
M C PN +T+ +L+ GLC R+ AA L ++ C PNV+TFN L
Sbjct: 449 MPC-KPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLE 507
Query: 68 -ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
A+ L E+M+ E G C P+++T ++DG+ KD ++ +G+ PDV+T +
Sbjct: 508 EAIELVEQMM-EHG--CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFS 564
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------------DGFAWW-SK 162
+ LSK+ ++EEA L V+ + P YN ++ D FA+ S
Sbjct: 565 SIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSN 624
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
GC + +Y ILI G + +++A L + S G+
Sbjct: 625 GCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 175/375 (46%), Gaps = 58/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A+ F LL + P++ T L+ L + ++ ++ + + P+V F
Sbjct: 203 GFAADVFSLLAK---KGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLF 259
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ A+ LF +M + GV P+VVT NII GLCK G
Sbjct: 260 STMINAFCKGHREDDAIGLFSKM-EKLGV--APNVVTYNNIIHGLCKSGRLDEAYRFKEK 316
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M+ + + P ++T +V + L K K++EANC+L+ M + PN YNTL+DG+
Sbjct: 317 MVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGN 376
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG + + N LI G+CK + A ++ EM+ G+ + +++
Sbjct: 377 ISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSM 436
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M + N+ P+ + TT + GL K G EA++++ +
Sbjct: 437 VINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKG 496
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V I T N LI GLCK G ++ + +++ GL D +TYN +I G CKEG+ ++
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLER-GLVFDRITYNTLISGCCKEGKVKEG 555
Query: 311 NGLLLDMEETGLEPN 325
L +M + G++P+
Sbjct: 556 FELKEEMVKKGIQPD 570
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 87/392 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL---------NV 51
MG S + +L +PN VT NSLI+G C +I +A + +++
Sbjct: 374 MGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGS 433
Query: 52 FCCDPNVITFNTLALVALNLFEEMV------------NEFGVICK--------------- 84
F N + + AL+ EM+ +CK
Sbjct: 434 FSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLL 493
Query: 85 -----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
P++VT +I GLCK G M+++G+ D +T N + K+GK++
Sbjct: 494 GKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVK 553
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVYSYNILI 175
E L E M+++ + P+ T+N L+ G W + G +VY+Y ++I
Sbjct: 554 EGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMI 613
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+GYCK VE+ +L E++S+ + ++ YN+L A Y NG
Sbjct: 614 DGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRA----------YCI-------NGN 656
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A ++ + + +L+ T + L+ GLC IG + D H+L M+ GL P+VV
Sbjct: 657 MNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIG---LVDDAKHLLDEMRKEGLLPNVVC 713
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y +I G+ K GQ K N +L +M + PN
Sbjct: 714 YTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPN 745
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 151/343 (44%), Gaps = 56/343 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L R+L F PN+VT N+LI GLC G + E +L + + + IT+
Sbjct: 480 GKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITY 539
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
NTL L EEMV + G+ +PD+ T ++ GLC + +D+ R
Sbjct: 540 NTLISGCCKEGKVKEGFELKEEMVKK-GI--QPDIYTFNLLLHGLC-NADKIDEASRLWH 595
Query: 110 --------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
P+V T VM D K K+EE LL ++ + + N+ YN+L+ +
Sbjct: 596 ECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCING 655
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S+G +Y+ L++G C V+DA L EM EG+
Sbjct: 656 NMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLL------- 708
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P+ YTT I G K G + + V + +H T +IDG CK
Sbjct: 709 ----------PNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCK 758
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+G+ K A + + M G+ PD VTYN +G CKEG+ ++A
Sbjct: 759 LGKTKEAAKLLNE-MTEKGILPDAVTYNAFTNGLCKEGKVEEA 800
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 159/357 (44%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + +++ +P+++T++ I GL +I EA + K+++ PN + +
Sbjct: 305 GRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVY 364
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL AL + ++M+++ G+ P+ VT ++I G CK
Sbjct: 365 NTLIDGYCKMGNISEALKIRDDMLSK-GI--SPNSVTLNSLIQGFCKSDQIGQAENVLEE 421
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G+ + + +++ + L + A + M+ R++ PN TL+ G
Sbjct: 422 MIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGK 481
Query: 158 -----AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W KG ++ + N LI+G CK N+++ + L R+ML G+ D TYNT
Sbjct: 482 QGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I G K G V E ++ + I T N L+ GLC
Sbjct: 542 L-----------------ISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNA 584
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A ++H +N G P+V TY +MI G+CK + ++ LL ++ LE N
Sbjct: 585 DKIDEASRLWHECKKN-GYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELN 640
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 110/273 (40%), Gaps = 65/273 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ GF L ++ P++ TFN L+ GLC +I EA+RL+ + PNV T+
Sbjct: 550 GKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTY 609
Query: 62 NTL---------ALVALNLFEEMVN---EFGVICKPDVV--------------------- 88
+ NL E+V+ E + ++
Sbjct: 610 GVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKS 669
Query: 89 --------TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
T ++++ GLC G M +G+ P+VV + SK G+M +
Sbjct: 670 RGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNK 729
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
N +L+ M +++PN TY ++DGF KG D +YN N
Sbjct: 730 VNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTN 789
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G CK+ VE+A +C EM S + D TY TL
Sbjct: 790 GLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTL 822
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 21/159 (13%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVA 68
+L+SC T++SL+ GLC G + +A L ++ PNV+ + T+ L
Sbjct: 672 VLLSC-----ATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQ 726
Query: 69 LNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
+N ++ E P+ T T +IDG CK G M ++G+ PD VT N
Sbjct: 727 MNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNA 786
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
T+ L K+GK+EEA + + M V + TY TL+DG
Sbjct: 787 FTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
HVY+T L GF A VFS + +++TC L+ L K LK +++++
Sbjct: 191 HVYSTQFKHL---GFGFAA-DVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDF 246
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+ PDV ++ MI+ FCK + A GL ME+ G+ PN
Sbjct: 247 ICLG-GIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPN 290
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 155/357 (43%), Gaps = 56/357 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ VT+++LI C GR A RL ++ P + + + AL+L
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSL 287
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
FEEM + C+PDV T T +I GL K G M + +PD V +N M +
Sbjct: 288 FEEMRYMY---CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINF 344
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-----------FAWWSK----GCRH 166
L K G++++ L E M PN TYNT++ F+W+ + G
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISP 404
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---------- 216
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464
Query: 217 --------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ VY I L K G + +A+ +F + C + N L+ GL +
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A MQ G PD+ +YNI+++G K G +A +L +M+ + ++P+
Sbjct: 525 CMLDEALTTMRK-MQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 43/310 (13%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +I+ L I +A +F ++ C P +N++ ++ ++ L+ EM
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN-LSKDGKMEEANCLL 135
NE C PD VT + +I CK G D +R LN M +N + K+ ++
Sbjct: 222 NEGH--CHPDTVTYSALISAFCKLG-RQDSAIR----LLNEMKENGMQPTAKI--YTMII 272
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ + D N +L + + CR DV++Y LI G K +++A EM
Sbjct: 273 SLFFKLD---NVHGALSLFEEMRYMY--CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQ 327
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
E + PD+ V I+ L K G + + +K+F +G C+ +
Sbjct: 328 REDCK-----------------PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNV 370
Query: 256 ETCNCLIDGLCKI-GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N +I L + R+ + F M+ G++P TY+I+I GFCK + +KA LL
Sbjct: 371 VTYNTIIKALFESKSRVSEVFSWFER-MKGSGISPSPFTYSILIDGFCKTNRIEKAMMLL 429
Query: 315 LDMEETGLEP 324
+M+E G P
Sbjct: 430 EEMDEKGFPP 439
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 68/263 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF- 79
P+ V N++I L GR+ + +LF+++ V C PNV+T+NT+ + AL + V+E
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTI-IKALFESKSRVSEVF 391
Query: 80 -------GVICKPDVVTCTNIIDGLCK----DGFMM------DQGMRP------------ 110
G P T + +IDG CK + MM ++G P
Sbjct: 392 SWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451
Query: 111 -----------------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
VM +L K G++++A L + M + PN
Sbjct: 452 GKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNV 511
Query: 148 CTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
YN LM G A GC D+ SYNI++NG K A+ +
Sbjct: 512 YAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTN 571
Query: 194 MLSEGIRADATTYNTLFMAINNV 216
M + I+ DA +YNT+ A+++
Sbjct: 572 MKNSTIKPDAVSYNTVLSALSHA 594
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L + +C + + + +IK L GR+ +A LF +++ C PNV +N L L
Sbjct: 463 LFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522
Query: 68 ALNLFEEMV------NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
+ +E + E G C PD+ + I++GL K G M + ++PD
Sbjct: 523 RACMLDEALTTMRKMQEHG--CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
V+ N + LS G EEA L++ M + TY+++++
Sbjct: 581 AVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEA 625
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 97/248 (39%), Gaps = 36/248 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------VF 52
R S F R+ S +P+ T++ LI G C RI +A L ++++ +
Sbjct: 385 SRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAY 444
Query: 53 CCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
C + + +A LF+E+ G +I L K G + D
Sbjct: 445 CSLIDALGKAKRYDLACELFQELKENCG---SSSARVYAVMIKHLGKAGRLDDAINLFDE 501
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
G P+V N + L++ ++EA + M + P+ +YN +++G A
Sbjct: 502 MSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGG 561
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ + D SYN +++ E+A L +EM + G D TY++
Sbjct: 562 PHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSS 621
Query: 209 LFMAINNV 216
+ AI V
Sbjct: 622 ILEAIGKV 629
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
R+V N M F W +K +HD +Y LI +C + VE + + M+ E
Sbjct: 94 REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALI--HCLEL-VEQYGEMWK-MIQEM 149
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+R+ M ++ V I L + +A+ +F I KC T +
Sbjct: 150 VRSPICVVTP--MELSQV----------IRMLGNAKMIGKAITIFYQIKARKCQPTAQAY 197
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I L G+ + ++++ + PD VTY+ +I FCK G+ A LL +M+
Sbjct: 198 NSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMK 257
Query: 319 ETGLEP 324
E G++P
Sbjct: 258 ENGMQP 263
>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 187/437 (42%), Gaps = 130/437 (29%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---- 68
R+L +PN+V+ + LIKG C GRILEA LF ++ +P+++T++ AL+A
Sbjct: 402 RMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYS--ALIAGFCK 459
Query: 69 -------LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
L+E+M+ + C+PD + + +I+GLCK G + D +G+ P+
Sbjct: 460 SGNLRDGFYLYEDMIKK---RCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPN 516
Query: 112 VVTLNVMTDNL-----------------------------------SKDGKMEEANCLLE 136
V TLN + D+ ++ G+++EA L
Sbjct: 517 VFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFF 576
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSK---------------------------------- 162
M+++D P+ TY TL+DG K
Sbjct: 577 QMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREG 636
Query: 163 ---------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
G + DV+++N +I YC + ++DAV L +M SE +R +A T+
Sbjct: 637 HLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFT 696
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA-MKVFSAIGN 248
L A P+ Y+ I G +K+ ++E+ +K+++ +
Sbjct: 697 ILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLE 756
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ I + + LIDGLCK G +K A F + + L PDV+ Y I+I G+CK G+
Sbjct: 757 NNIAPNIVSYSILIDGLCKRGLMKEASCAFRCAL-DKHLLPDVIAYTILIRGYCKVGRLT 815
Query: 309 KANGLLLDMEETGLEPN 325
+A L +M L P+
Sbjct: 816 EAMMLYDNMLLNRLTPD 832
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 162/353 (45%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---- 74
PN+VTF++LI C EG + +A LF + P++I ++ L L E+
Sbjct: 305 PNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRL 364
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
++ K DVV ++ +D K G M+++G+ P+VV+ +++ +
Sbjct: 365 LLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQ 424
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWW----SKGCRHDVYS 170
+G++ EA L +++ P+ TY+ L+ DGF + K C D
Sbjct: 425 NGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIV 484
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMA 212
Y++LING CK V DA+ + ++ G+ + T NTL M
Sbjct: 485 YSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMG 544
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ N+ D+ YT I G + G V EA+ +F + + T LIDGLCK+ +
Sbjct: 545 MLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSS 604
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF + +N + PD+ YN++I+ +EG + A GL + + E G +P+
Sbjct: 605 AGLCIFDFMCKN-AVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPD 656
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 128/284 (45%), Gaps = 43/284 (15%)
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KP+VVT + +ID CK+G M G+ PD++ +++ D L K G++E+
Sbjct: 304 KPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQR 363
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYC 179
LL V + + + + +++ MD + ++G +V S +ILI G+C
Sbjct: 364 LLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFC 423
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
++ + +A L ++L G TY+ L M PD+
Sbjct: 424 QNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTI 483
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VY+ I+GL K G V +A++ F N + T N L+D C++ + A +++ L
Sbjct: 484 VYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYY-L 542
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + D VTY I+I G + G+ +A L M + +P+
Sbjct: 543 MGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPD 586
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 42/264 (15%)
Query: 86 DVVTCTNIIDGL--------CKDGFMM--DQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
D++TC I+ G+ D F M G +P+VVT + + D K+G +++A L
Sbjct: 271 DIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLF 330
Query: 136 EVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILINGYCKD 181
+VM V P+ Y+ L+DG KG + DV ++ ++ Y K
Sbjct: 331 DVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKI 390
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
++ + + + ML+EGI + + + L I G +NG +LEA
Sbjct: 391 GDLGRVIQIYKRMLNEGISPNVVSCSIL-----------------IKGFCQNGRILEACG 433
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+F I +I T + LI G CK G L+ + ++ +++ PD + Y+++I+G
Sbjct: 434 LFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKR-CEPDTIVYSVLINGL 492
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK+G A GL PN
Sbjct: 493 CKQGLVGDALRFFFQAVNRGLSPN 516
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 37/243 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ ++S G + + + P++ +N LI EG + A LF + P+V T
Sbjct: 600 LKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFT 659
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
FNT+ A+ LF +M +E +P+ +T T +ID C++G M
Sbjct: 660 FNTMICCYCNFKRLDDAVQLFAKMTSE---QLRPNAITFTILIDAFCREGRMDDAMLMFS 716
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANC-LLEVMIQRDVNPNTCTYNTLMDGF--- 157
+++G P++VT + + K M E+ L M++ ++ PN +Y+ L+DG
Sbjct: 717 KMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKR 776
Query: 158 --------AWWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
A+ +H DV +Y ILI GYCK + +A+ L ML + D
Sbjct: 777 GLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLE 836
Query: 207 NTL 209
TL
Sbjct: 837 RTL 839
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 42/170 (24%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L ++ PN +TF LI C EGR+ +A +F K+ +PN++T++
Sbjct: 672 RLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYS 731
Query: 63 ----------TLALVALNLFEEMVN--------EFGVI----CK---------------- 84
++ L L+ EM+ + ++ CK
Sbjct: 732 CLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALD 791
Query: 85 ----PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
PDV+ T +I G CK G + + M D + LN +T + + +EE
Sbjct: 792 KHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLERTLEE 841
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------AL 69
CF P+ +T++ L+ GR A RLF ++ P + TL + AL
Sbjct: 198 CF-PDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDEKAL 256
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
L +EM ++ C P V T T +I GL K G M+ G +PDVV +N +
Sbjct: 257 GLVQEMKDKG---CAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLI 313
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----GC 164
+ K G++E+A L + M PN TYNT++ +W+ K G
Sbjct: 314 NIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGV 373
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------- 217
++Y+ILI+G+CK VE A+ L EM +G Y +L A+
Sbjct: 374 TPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANE 433
Query: 218 -----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ +Y I L K G EA+ +F+ + C + N L+ GL
Sbjct: 434 LFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLV 493
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G ++ A+ + +N G TPD+ ++NI+++G + G+ ++A + + M+++ ++P+
Sbjct: 494 RAGMIEEAFSALRTMEEN-GCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPD 551
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 138/336 (41%), Gaps = 50/336 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + +L P++V N+LI GR+ +A +LF ++ C PNV+T+
Sbjct: 285 GRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTY 344
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NT V LFE K + + M G+ P T +++ D
Sbjct: 345 NT---VIKALFE---------SKAPASEAASWFEK------MKANGVTPSSFTYSILIDG 386
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSKGC-RHD 167
K ++E+A LLE M ++ P Y +L++ F + C R
Sbjct: 387 FCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSS 446
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
Y ++I K +AV L EM G D YN L +
Sbjct: 447 ARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNAL-----------------M 489
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + G + EA + + C + + N +++GL + GR + A ++F M M++ +
Sbjct: 490 SGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMF-MKMKDSLI 548
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
PD V+YN ++ + G ++A L+ +M G E
Sbjct: 549 KPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFE 584
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 48/312 (15%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKP 85
+ ++K L + +A +F ++ C P T+N++ L+ L +E +E
Sbjct: 134 LSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILM---LMQEGHHE------- 183
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
+ +C +G PD +T +V+ K G+ + A L + M ++P
Sbjct: 184 ---KIHELYHEMCNEGDCF-----PDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHP 235
Query: 146 NTCTYNTLMDGF-------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y TL+ + KGC V++Y LI G K VEDA S+
Sbjct: 236 TAKIYTTLLAIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFL 295
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
ML +G + D N L I+ K G + +A+K+F + + KC
Sbjct: 296 NMLKDGCKPDVVLINNL-----------------INIFGKAGRLEDALKLFDQMRSLKCA 338
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T N +I L + + M+ G+TP TY+I+I GFCK + +KA
Sbjct: 339 PNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALL 398
Query: 313 LLLDMEETGLEP 324
LL +M+E G P
Sbjct: 399 LLEEMDEKGFPP 410
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 43/238 (18%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LL + F P + SLI L R A LF +L C + +
Sbjct: 392 RVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYA 451
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A++LF EM + C PDV ++ GL + G M
Sbjct: 452 VMIKNLGKCGRPSEAVDLFNEMKK---IGCNPDVYAYNALMSGLVRAGMIEEAFSALRTM 508
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ G PD+ + N++ + L++ G+ E+A + M + P+ +YNT++ +
Sbjct: 509 EENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLS----- 563
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
R ++ E+A L REM S G D TY+++ A+ V D
Sbjct: 564 -RSGMF---------------EEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605
>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 825
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 165/384 (42%), Gaps = 73/384 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ A G FV + R +C+ + ++ LIKGLC GRI +A R+F K++ C P V T
Sbjct: 141 LAAACGLFVQMPRRWGACY--DRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHT 198
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ L A L EMVN+ GV+ P+VVT +I GLC++G D
Sbjct: 199 YTVLLDGLCKVRRVGEAEALLGEMVNK-GVV--PNVVTYNALIGGLCQEGRFDDVTKLLE 255
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
Q PD T + L K GK+ +L I + V TYN L++G+
Sbjct: 256 KMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYC--- 312
Query: 162 KG-----------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
KG V ++N +I+G+C V A++ +M G+ +
Sbjct: 313 KGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTV 372
Query: 205 TYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS-- 244
T+N+L M V PD Y +ID L G + EA +FS
Sbjct: 373 TFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCL 432
Query: 245 ---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
I H + T L+ G C++G + A+ + M + PDV TYN +I G
Sbjct: 433 PMKGIKAHNVIYT-----SLVHGYCQVGDIDSAFGLMEK-MASENCMPDVHTYNTLIDGL 486
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK + +A LL M++ G+EP
Sbjct: 487 CKVKRLDRAIDLLDKMKKQGIEPT 510
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 142/326 (43%), Gaps = 57/326 (17%)
Query: 55 DPNVITFNTLALVALN-------LFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF- 102
DP+ + + AL+A + ++ FG + K P+ T +I+ CK
Sbjct: 47 DPSDVRSHNAALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALL 106
Query: 103 ---------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP--NTCTYN 151
M + G+ PD T N + L + G + A C L V + R + +Y
Sbjct: 107 ADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAA-CGLFVQMPRRWGACYDRYSYT 165
Query: 152 TLMDG-------------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
L+ G FA S+G CR V++Y +L++G CK R V +A +L EM+++
Sbjct: 166 ILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNK 225
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G+ + TYN L M I PD YT + GL K+G V
Sbjct: 226 GVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHG 285
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
KV L + T N LI+G CK G +K A D+ ++ +N + P V T+N +IH
Sbjct: 286 AKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNR-VNPGVQTFNEVIH 344
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFC G+ KA L M GL PN
Sbjct: 345 GFCCGGKVHKAMAFLTQMAGAGLSPN 370
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 156/365 (42%), Gaps = 72/365 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R LLG ++ PN+VT+N+LI GLC EGR + +L +K+ + P+ T+
Sbjct: 211 RVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTY- 269
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDV 112
T ++ GLCK G + + +G+ +V
Sbjct: 270 ----------------------------TQVVHGLCKHGKVGHGAKVLHEAIGKGVALEV 301
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
+T N + + K G M+ A +L++M + VNP T+N ++ GF K
Sbjct: 302 LTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQ 361
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY------------ 206
G + ++N LI+G C + A+ L M G+ D TY
Sbjct: 362 MAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQ 421
Query: 207 ----NTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
++LF + + + + +YT+ + G + G + A + + + C+ + T N
Sbjct: 422 LEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNT 481
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK+ RL A D+ M+ G+ P T+NI+I + +H A + M +
Sbjct: 482 LIDGLCKVKRLDRAIDLLDK-MKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISS 540
Query: 321 GLEPN 325
G +P+
Sbjct: 541 GCKPD 545
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 148/366 (40%), Gaps = 54/366 (14%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---- 66
G +L S PN T+N+LI C + +A ++ P+ T+N L L
Sbjct: 78 FGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCR 137
Query: 67 -----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGM-RPD 111
A LF +M +G D + T +I GLC G + M +G RP
Sbjct: 138 AGLLAAACGLFVQMPRRWGAC--YDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPG 195
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-------- 163
V T V+ D L K ++ EA LL M+ + V PN TYN L+ G +
Sbjct: 196 VHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLE 255
Query: 164 ----CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
RH D ++Y +++G CK V + E + +G+ + TYN L
Sbjct: 256 KMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGG 315
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
M N V P + I G G V +AM + + T N
Sbjct: 316 DMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFN 375
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
LI G C +G KIA + LM+ G+ PD TY I I C EGQ ++A+ L +
Sbjct: 376 SLISGQCSVGERKIALRLLD-LMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPM 434
Query: 320 TGLEPN 325
G++ +
Sbjct: 435 KGIKAH 440
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 70/366 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + +PN VTFNSLI G C+ G A RL + + P+ T+
Sbjct: 350 GKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTY 409
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMD 105
AL EE + F + K V T+++ G C+ G M
Sbjct: 410 AIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMAS 469
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW------ 159
+ PDV T N + D L K +++ A LL+ M ++ + P TCT+N L+ W
Sbjct: 470 ENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHAD 529
Query: 160 --------WSKGCRHDVYSYNILIN-----GYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S GC+ D +Y + I+ G K+ N++ AV EM G+ D TY
Sbjct: 530 AAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVV---EMHEAGVFPDVETY 586
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N + A Y+D K +K+ S + C T + L++ +C
Sbjct: 587 NAIIKA-------------YVDAGLKEKAFFAHVKMLSVPIDPDCT----TYSILLNYMC 629
Query: 267 --------------KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
K+ ++ ++F + ++ P + TY ++ G C + + ++
Sbjct: 630 NKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDA-APGISTYKALLRGLCNQCRLEEVEW 688
Query: 313 LLLDME 318
LLL M+
Sbjct: 689 LLLKMQ 694
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 138/340 (40%), Gaps = 40/340 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L+ ++ P++ T+N+LI GLC R+ A L K+ +P T
Sbjct: 454 VGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCT 513
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVT-----CTNIIDGLCKDG----- 101
FN L A ++E+M++ CKPD T T+ +G K+
Sbjct: 514 FNILIKQMLWDKKHADAAKMYEQMISSG---CKPDKQTYTLKISTDWFEGATKEENIDMA 570
Query: 102 --FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----- 154
M + G+ PDV T N + G E+A M+ ++P+ TY+ L+
Sbjct: 571 VVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCN 630
Query: 155 ----DGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS---EGIRADATTYN 207
D F DV + L C + + +S + +L R + +
Sbjct: 631 KDDSDAFDNEKIWKMVDVRNLQELFEQMC-ESDAAPGISTYKALLRGLCNQCRLEEVEWL 689
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKN-GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
L M N++ D + + Y+ G Y N EA + F ++ + +++C L+ GLC
Sbjct: 690 LLKMQGNSILLDEDM-SDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLC 748
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
G +A IF ++ G D V + ++I ++G
Sbjct: 749 DSGDHGMAVSIFSDML-GLGYNYDEVVWKLLIDCLHEKGH 787
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 164/362 (45%), Gaps = 67/362 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMV 76
FNSLI+ G E+ ++F + P+V+TFN+L L+ A ++F+EM+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKD 125
+ +GV PD T +I G CK+ M+D+G R PD+VT N + D L +
Sbjct: 219 STYGVT--PDTYTFNILIRGFCKNS-MVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRA 275
Query: 126 GKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK+ A+ ++ M+++ ++NP+ TY TL+ G+ SKG + +
Sbjct: 276 GKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEI 335
Query: 170 SYNILINGYCKDRNVEDAVSLCREML-SEGIRADATTYNTLF------------------ 210
+YN LI G C+ + ++ + L G D T NTL
Sbjct: 336 TYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEK 395
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG------ 264
M + NV PDS Y+ I L + G A ++F + + +L + C L+
Sbjct: 396 MMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMFE 455
Query: 265 -LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ G+ A +F LM+ T D +++ I+I G C+EG + LL+ M
Sbjct: 456 FLCRNGKTAKAERVFRQLMKRG--TQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFV 513
Query: 324 PN 325
P+
Sbjct: 514 PD 515
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 61/327 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F P+ T N+L+ C G + +A +F+K+ V P+ T++ L A
Sbjct: 366 FIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAE 425
Query: 70 NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL 115
LF+E+ + ++ C P V ++ + LC++G +M +G + D ++
Sbjct: 426 QLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSF 484
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------------ 157
++ ++G E LL +M++RD P+ TY +L+DG
Sbjct: 485 KILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIK 544
Query: 158 ---------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+KGC H+ + +L+ +N+ + R + G+R
Sbjct: 545 SSHVPETSTFHSILARLLAKGCAHESARFIMLMLEGKIRQNINLSTHTVRLLFGSGLRDK 604
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
A L A N D ++ + F+L + + H+ V I+ C+ +I
Sbjct: 605 AFKIVGLLYA-NGYVVDMEELIGFLS--HNRKFLLAHKLLLFCLEKHQNV-DIDMCDTVI 660
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+GLCK+ R A+ +++ L++ P
Sbjct: 661 EGLCKMKRHSEAFGLYYELVEKGNNQP 687
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 149 TYNTLMDGFAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
T + + F W + G H+ SY +++ + RN+ A + + S R++ T
Sbjct: 98 TPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNF---LFSIKRRSNGT--- 151
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
V + + + I K G E+++VF+++ + ++ T N L+ L K
Sbjct: 152 --------VKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLK 203
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
GR +A +F ++ G+TPD T+NI+I GFCK
Sbjct: 204 RGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCK 239
>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
Length = 1013
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 169/371 (45%), Gaps = 87/371 (23%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLALVA-----LNLF 72
++VT ++L+ GLC +GR EA LF++++ PN +T+ ++LA L+L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLL 332
Query: 73 EEMVNEFGVI---------------------------------CKPDVVTCTNIIDGLCK 99
EMV+ GV+ P+ VT T +ID LCK
Sbjct: 333 GEMVSR-GVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCK 391
Query: 100 DG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M ++ + P+VVT + + + K G +++A +M +R +NPN T
Sbjct: 392 AHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVT 451
Query: 150 YNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y TL+DGF + +G + + + + L+NG ++ +E+A++L ++
Sbjct: 452 YGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDAS 511
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
G+ D HV YTT IDGL+K G + A K + + +
Sbjct: 512 GSGLSLD------------------HVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPD 553
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
N I+ LC +G+ K A F M+N GL PD TYN MI C++G+ KA LL
Sbjct: 554 AVVYNVFINCLCMLGKFKEAKS-FLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612
Query: 315 LDMEETGLEPN 325
+M+ + ++PN
Sbjct: 613 HEMKMSSIKPN 623
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 134/326 (41%), Gaps = 62/326 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + R+ ++V +N+L+ G C G++ A + + DPNV T
Sbjct: 182 VGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVAT 241
Query: 61 FNTLALVALNLFEEMVNEFGVICKPD-VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
+ + C+ V ++ +G+ ++G ++D VVTL+ +
Sbjct: 242 YTPFIVY--------------YCRTKGVEEAFDLYEGMVRNGVLLD------VVTLSALV 281
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L +DG+ EA L M + PN TY TL+D A +G
Sbjct: 282 AGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRG---------------- 325
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSH 221
++ +SL EM+S G+ D TY L F +N+ P+
Sbjct: 326 -----KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGV 380
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT ID L K V EA +V + + T + +I+G K G L A + + +
Sbjct: 381 TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE-YKRM 439
Query: 282 MQNPGLTPDVVTYNIMIHGFCK-EGQ 306
M+ G+ P+VVTY +I GF K +GQ
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQ 465
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 62/328 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ T+N++I C +G +A +L ++ + PN+IT+NTL A L
Sbjct: 587 PDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYL 646
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EMV+ P +T ++ + +MM+ G+ D+ N +
Sbjct: 647 LNEMVSAG---FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQV 703
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L G +A +LE M+ + P+T T+N LI G+CK
Sbjct: 704 LCYHGMTRKATVVLEEMLGSGIAPDTITFNA---------------------LILGHCKS 742
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVY 223
++++A + +ML + I + T+NTL + +V P++ Y
Sbjct: 743 SHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTY 802
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
G K +EAM+++ + V + T N LI K G + A ++F MQ
Sbjct: 803 DILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKD-MQ 861
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
G+ P TY+I++ G+ + QK+
Sbjct: 862 KRGVHPTSCTYDILVSGWYDLAREQKSQ 889
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 72/326 (22%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
VT N+L+ GLC G++ AA L + G I
Sbjct: 136 VTVNTLLAGLCRNGQVDAAAAL------------------------------ADRGGGIH 165
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
DV+ +I G C+ G M QG+ DVV N + + G+++ A
Sbjct: 166 ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARG 225
Query: 134 LLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYSYNILINGYC 179
+L++M + V+PN TY + + F + R+ DV + + L+ G C
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+D +A +L REM G P+ Y T ID L K G E
Sbjct: 286 RDGRFSEAYALFREMDKVG-----------------AAPNHVTYCTLIDSLAKAGRGKEL 328
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + V+ + T L+D L K G+ D + + L+P+ VTY ++I
Sbjct: 329 LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSD-NLSPNGVTYTVLID 387
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
CK +A +LL+MEE + PN
Sbjct: 388 ALCKAHNVDEAEQVLLEMEEKSISPN 413
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/407 (25%), Positives = 157/407 (38%), Gaps = 120/407 (29%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALN 70
+PN+VTF+S+I G G + +A + + +PNV+T+ TL AL
Sbjct: 411 SPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALE 470
Query: 71 LFEEM------VNEF--------------------------GVICKPDVVTCTNIIDGLC 98
++ +M VN+F G D V T +IDGL
Sbjct: 471 VYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLF 530
Query: 99 KDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANC--------------- 133
K G M MD+ M PD V NV + L GK +EA
Sbjct: 531 KAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQS 590
Query: 134 --------------------LLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
LL M + PN TYNTL+ G
Sbjct: 591 TYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
S G ++ ++ + R ++ + + M++ G+ AD T YNTL +
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVL------ 704
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF- 278
Y K VLE M +G+ TI T N LI G CK L A+ +
Sbjct: 705 -----CYHGMTRKATVVLEEM-----LGSGIAPDTI-TFNALILGHCKSSHLDNAFATYA 753
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
ML QN ++P++ T+N ++ G G+ +A +L++ME++GLEPN
Sbjct: 754 QMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 123/310 (39%), Gaps = 53/310 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL + MS PN++T+N+L+ GL G + +A L ++ P+ +T
Sbjct: 603 GETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ V L++ E M+N D+ ++ LC G
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAG---LHADITVYNTLLQVLCYHGMTRKATVVLEE 719
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +T N + K ++ A M+ ++++PN T+NTL+ G +
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGR 779
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + +Y+IL G+ K N +A+ L EM+ +G +TYN
Sbjct: 780 IGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNA 839
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I K G + +A ++F + T T + L+ G +
Sbjct: 840 L-----------------ISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWYDL 882
Query: 269 GRLKIAWDIF 278
R + + + +
Sbjct: 883 AREQKSQNTY 892
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
D S N L+ +C+ R + A++L R R YN L A+++
Sbjct: 72 DPASLNALLYSHCRLRLLRPAIALLRSS-----RPTTVAYNILLAALSDHAHAPAVLAEM 126
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
VP D T + GL +NG V +A + G L + N LI G C++G
Sbjct: 127 CKRGVPFDGVTVNTLLAGLCRNGQV-DAAAALADRGGGIHALDVIGWNTLIAGYCRVGDT 185
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M GL DVV YN ++ GFC+ GQ A G+L M+E G++PN
Sbjct: 186 PAALSVADR-MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPN 238
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 54/374 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVI 59
+GR F +GR++ + + + F+ L+KGLC R +A + +++ C P++
Sbjct: 112 LGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLF 171
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------- 101
++ L + AL+L M + G C DVV T +I+GL ++G
Sbjct: 172 SYTILLKGLCDDKTSQQALDLLHIMADHKGR-CPLDVVAYTTVINGLLREGQLDKAYSLF 230
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
M+D+G PDVVT + + LSK M++A + M++ V P+ Y +L+ G+
Sbjct: 231 DAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 290
Query: 158 -------AWWSKGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ K CRH DV +Y L++ CK+ +A + ++ G + D+TTY
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350
Query: 207 NTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TL M + H++ + K+ V EA+ VFS +
Sbjct: 351 GTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQ 410
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
I ++D LC GR+ A F+ L ++ GL P++V + +IHG C +
Sbjct: 411 QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSL-KSEGLAPNIVVFTTLIHGLCTCDKWD 469
Query: 309 KANGLLLDMEETGL 322
K L +M + G+
Sbjct: 470 KVEELAFEMIDRGI 483
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 163/355 (45%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
++V + ++I GL EG++ +A LF + P+V+T++++ AL ++ F
Sbjct: 206 DVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF 265
Query: 80 GVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
+ K PD + T+++ G C G M G+ PDVVT + D L K+
Sbjct: 266 TRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKN 325
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSY 171
GK EA + + +++R P++ TY TL+ G+A KG + + +
Sbjct: 326 GKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIF 385
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N+++ Y K V++A+ + M +G+ D Y T+ +
Sbjct: 386 NMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKS 445
Query: 214 NNVPPDSHVYTTYIDGL---YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
+ P+ V+TT I GL K V E F I C+ TI N ++ LCK GR
Sbjct: 446 EGLAPNIVVFTTLIHGLCTCDKWDKVEEL--AFEMIDRGICLDTI-FFNAIMGNLCKKGR 502
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F LM G+ P+ TYN +I G+C +G+ +A LL M G++P+
Sbjct: 503 VIEAKNLFD-LMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPS 556
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 150/345 (43%), Gaps = 54/345 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------- 64
R++ + P+ + + SL+ G C+ G+ EA +FKK+ +P+V+T+ L
Sbjct: 267 RMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG 326
Query: 65 -ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
+ A +F+ +V KPD T ++ G +G MM +GM+
Sbjct: 327 KSTEARKIFDSLVKRG---HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHH 383
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
N++ +K K++EA + M Q+ +NP+ Y T++D +
Sbjct: 384 IFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSL 443
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
S+G ++ + LI+G C + L EM+ GI D +N +
Sbjct: 444 KSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAI---------- 493
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+ L K G V+EA +F + T N LIDG C G++ A +
Sbjct: 494 -------MGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLG 546
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+++ N G+ P VTYN +I+G+ + G+ + LL +M+ G+ P
Sbjct: 547 VMVFN-GVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNP 590
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 43/212 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P++V + +++ LCT GR+ +A F L PN++ F TL + EE+
Sbjct: 415 PDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEEL 474
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
E M+D+G+ D + N + NL K G++ EA L
Sbjct: 475 AFE------------------------MIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLF 510
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
++M++ + PNT TYNTL+DG+ K G + +YN +INGY ++
Sbjct: 511 DLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQN 570
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ED ++L REM +G+ TY L +
Sbjct: 571 GRIEDGLTLLREMDGKGVNPGIVTYEMLLQGL 602
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
+ + FN+++ LC +GR++EA LF + +PN T+NTL +E +
Sbjct: 486 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 545
Query: 80 GVIC----KPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKD 125
GV+ KP VT II+G ++G + D +G+ P +VT ++ L +
Sbjct: 546 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQA 605
Query: 126 GKMEEANCLLEVMIQRD 142
G+ A L MI+ D
Sbjct: 606 GRTVAAKELYLRMIKWD 622
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 55/333 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN +TFN +IK +C G + +A +F+++ + C P+ T++TL A++L
Sbjct: 168 PNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSL 227
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM E G P++V +I LCK G M +G P+ VT N +
Sbjct: 228 LDEMQVE-GTF--PNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHG 284
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L GK+E+A LL M+ PN T+ TL++GF + ++G R +
Sbjct: 285 LCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGN 344
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
Y Y+ LI+G CK+ A+ L +EM+ +G + Y+ L
Sbjct: 345 EYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLS 404
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M P+S Y++ + G ++ G +A+ V+ + N+ C+ + LI+GLCK G
Sbjct: 405 EMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDG 464
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ A ++ ++ G+ DVV Y+ MIHGFC
Sbjct: 465 KFMEALMVWKQMLSR-GIKLDVVAYSSMIHGFC 496
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 102/364 (28%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA+ L+ + + PN VT+N+L+ GLC +G++ +A L ++ C PN +T
Sbjct: 256 LGRAAK---LVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVT 312
Query: 61 FNTL---------------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--- 102
F TL LV+L NE+ +++I GLCK+G
Sbjct: 313 FGTLINGFVMQGRASDGTRVLVSLEARGHRGNEY---------VYSSLISGLCKEGKFNQ 363
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M+ +G P+ + + + D L ++GK++EA L M + PN+ TY++LM
Sbjct: 364 AMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMR 423
Query: 156 GF-----------AW---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G+ W + C H+ Y+ILING CKD +A+ + ++MLS GI+
Sbjct: 424 GYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKL 483
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
D Y+++ I G V + +K+F+
Sbjct: 484 DVVAYSSM-----------------IHGFCNANLVEQGLKLFN----------------- 509
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
ML Q P + PDV+TYNI+++ FC + +A +L M + G
Sbjct: 510 -----------------QMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQG 552
Query: 322 LEPN 325
+P+
Sbjct: 553 CDPD 556
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 54/320 (16%)
Query: 41 EAARLFKKL-NVFCCDPNVITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTC 90
+A LF ++ F C V +FN++ V AL + +V + P+ +T
Sbjct: 114 KAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTF 173
Query: 91 TNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
+I +C+ G ++D+ + PD T + + L K+ +++EA LL+ M
Sbjct: 174 NLVIKAMCRLG-LVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQ 232
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
PN +N L+ + KGC + +YN L++G C +E
Sbjct: 233 VEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLE 292
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
AVSL +M+S N P+ + T I+G G + +V +
Sbjct: 293 KAVSLLNQMVS-----------------NKCVPNDVTFGTLINGFVMQGRASDGTRVLVS 335
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + LI GLCK G+ A +++ M G P+ + Y+ +I G C+EG
Sbjct: 336 LEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKE-MVGKGCGPNTIVYSALIDGLCREG 394
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +A G L +M+ G PN
Sbjct: 395 KLDEARGFLSEMKNKGYLPN 414
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 62/215 (28%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNLF 72
N V ++ LI GLC +G+ +EA ++K++ +V+ +++ L L LF
Sbjct: 449 NEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLF 508
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLC--KDGF--------MMDQGMRPDVVT----LNVM 118
+M+ + G + +PDV+T +++ C K F M+DQG PD +T L +
Sbjct: 509 NQMLCQ-GPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTL 567
Query: 119 TDNLS--KDGK--MEE-------------ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+N++ +DG+ ++E A+ ++EVM+ + + P T W+
Sbjct: 568 RENMNPPQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKAST----------WA 617
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
+++ CK +NV A+S C LS
Sbjct: 618 -----------MVVQQVCKPKNVRKAISECWSRLS 641
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 154/337 (45%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++VT+ LI LC G++ A LF K+ P+ + + TL L+ F N+FG
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITL----LDKF----NDFG 346
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
D+ T + DG+M PDVVT ++ D L K +EA +VM +
Sbjct: 347 -----DLDTFKEFWSQMEADGYM------PDVVTFTILVDVLCKARDFDEAFATFDVMRK 395
Query: 141 RDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ + PN TYNTL+ G S G + Y+YNI I+ + K
Sbjct: 396 QGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGK 455
Query: 187 AVSLCREMLSEGI-----RADATTYN-----------TLFMAI--NNVPPDSHVYTTYID 228
AV +M ++GI +A+ Y+ T+F + N + PDS Y +
Sbjct: 456 AVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMK 515
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K G V EA+ + S + + C + N LID L K GR+ AW +F M++ L+
Sbjct: 516 CYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDR-MKDMKLS 574
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTYN ++ G KEG+ QKA L M E PN
Sbjct: 575 PTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPN 611
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 170/368 (46%), Gaps = 57/368 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L ++ + F N ++N LI L G EA +++++ P++ T++ L +VAL
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL-MVAL 237
Query: 70 N----------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
L +EM + G+ +P+V T T I L + G M D+G
Sbjct: 238 GKKRDSEMVMVLLKEM-EDLGL--RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCG 294
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AW 159
PD+VT V+ D L G++E A L M P+ Y TL+D F +
Sbjct: 295 PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEF 354
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
WS+ G DV ++ IL++ CK R+ ++A + M +GI + TYNTL
Sbjct: 355 WSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR 414
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M V P ++ Y +ID K+G +A++ F + V I
Sbjct: 415 AGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVA 474
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
CN + L ++GRL+ A +F+ L +N GL PD VTYN+M+ + K GQ +A LL +M
Sbjct: 475 CNASLYSLAEMGRLREAKTMFNGLREN-GLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEM 533
Query: 318 EETGLEPN 325
G EP+
Sbjct: 534 IRNGCEPD 541
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 145/343 (42%), Gaps = 62/343 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LN 70
+P + ++N LI L +A LFK + C P+ TFN L V
Sbjct: 785 SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF--MMDQGMRPDVVTLNVMTD 120
L++EM++ CKPD +T +I L K D F ++ RP T + D
Sbjct: 845 LYKEMISR---RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLID 901
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L+K G++EEA L E M GC+ + +NILINGY K
Sbjct: 902 GLAKVGRLEEAMRLFEEM---------------------SDYGCKPNCAIFNILINGYGK 940
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+ E A L + M++EGIR D +Y L + + PD
Sbjct: 941 IGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIA 1000
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I+GL K+ + EA+ +++ + N V + T N L+ L G ++ A ++ L
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL- 1059
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q GL PDV TYN +I G+ + A + +M G PN
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 164/411 (39%), Gaps = 91/411 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + R+ +P +VT+N+L+ GL EGR+ +A LF+ + C PN I+F
Sbjct: 556 GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISF 615
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
NTL +AL +F +M + CKPDV+T +I GL K+
Sbjct: 616 NTLLDCFCKNDEVELALKMFSKMTV---MDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQ 672
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
+ + M PD VT+ + L K G++ +A + + M Q N + LM G A
Sbjct: 673 LKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAE 732
Query: 160 WSKG------------CRHDVY-----------------------------------SYN 172
K CR D + SYN
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
LI + E A L ++M + G DA T+N L M
Sbjct: 793 CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD+ Y I L K+ + +A+ F + + T T LIDGL K+GRL+ A
Sbjct: 853 RCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEA 912
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M + G P+ +NI+I+G+ K G + A L M G+ P+
Sbjct: 913 MRLFEE-MSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPD 962
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 58/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V N+ + L GR+ EA +F L P+ +T+N + A+NL
Sbjct: 470 PNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNL 529
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EM+ C+PDV+ ++ID L K G M D + P VVT N +
Sbjct: 530 LSEMIRNG---CEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSG 586
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHD 167
L K+G++++A L E MI++ +PNT ++NTL+D F +SK C+ D
Sbjct: 587 LGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +YN +I G K+ V A + L + + D T TL + +
Sbjct: 647 VLTYNTVIYGLIKENKVNHAFWFFHQ-LKKSMHPDHVTICTLLPGLVKCGQIGDAISIAR 705
Query: 228 DGLYK--------------NGFVLEAMKVFSAIGNHKCVLTIETCN------CLIDGLCK 267
D +Y+ G ++EA + I + VL C L+ LCK
Sbjct: 706 DFMYQVRFRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLN-GICREDSFLIPLVRVLCK 764
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R A+ IF + G++P + +YN +I + +KA L DM+ G P+
Sbjct: 765 HKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPD 822
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
++ S F P T+ LI GL GR+ EA RLF++++ + C PN FN L
Sbjct: 884 LVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGD 943
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
A LF+ MVNE G+ +PD+ + T ++D LC G + G+ PD +
Sbjct: 944 TETACQLFKRMVNE-GI--RPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIA 1000
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWSK------- 162
N + + L K +MEEA L M R + P+ TYN+LM G +K
Sbjct: 1001 YNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G DV++YN LI GY N E A ++ + M+ +G + TY L
Sbjct: 1061 LAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH------- 166
T N M + L K+E+ + E M ++ + + TY T+ + G R
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRG-GLRQMTTVLNK 182
Query: 167 --------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ YSYN LI+ + +A+ + R M+SEG++ TY+ L +A+
Sbjct: 183 MRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGK-KR 241
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS + V+ +K +G V T C I L + G++ A++IF
Sbjct: 242 DSEM-------------VMVLLKEMEDLGLRPNVYTFTIC---IRVLGRAGKIDEAYEIF 285
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G PD+VTY ++I C GQ + A L + M+ G +P+
Sbjct: 286 RR-MDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 161/399 (40%), Gaps = 101/399 (25%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
F +L+ + GR +A + F +++ F P +NT+ L+AL L+ M
Sbjct: 139 AFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V C P+ T ++DGLCK G M+D+G+ P+V V+ +L
Sbjct: 199 V---AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM------------------------------- 154
GK++EA LL M + P+ TYN +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315
Query: 155 --------------DGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
+GF ++ + DV Y I+I G + +EDA+S M
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+G D YNT+ M NN+ DS T I GL K G V E
Sbjct: 376 KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDE 435
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM--QNPGL--------- 287
AM++F +G H C T+ T N LIDG + GRL+ A +FH + NP L
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 288 -TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D + ++H C+ GQ KA LL + ++G+ P+
Sbjct: 496 QVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 97/415 (23%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L R++ + PN T+N L+ GLC +G +A ++F ++ PNV + L
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 65 ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK--------------------- 99
+L +E V G + C PD VT + GLCK
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310
Query: 100 -------------------DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+GF M+++ + PDVV +M ++ G++E+A L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370
Query: 136 EVMIQRDVNPNTCTYNTLMD-----GFAWWSKGCRHDVYSYN---------ILINGYCKD 181
+VM ++ P+T YNT++ G + R ++ N I+I G CK
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP----- 218
V++A+ + EM G TYN L M + N P
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRL 490
Query: 219 --------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
DS + + ++G VL+A K+ +I + V + T N LI+GLCK
Sbjct: 491 TLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARN 550
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +F L Q G++PD +TY +I G + + A L ++ ++G P+
Sbjct: 551 LDGAVRLFKEL-QLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 66/322 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GF +L +P++V + +I+G GRI +A + P+ +N
Sbjct: 327 RFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYN 386
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ V A L EM+ V+ D T T +I GLCK G M
Sbjct: 387 TVLKVLCDHGDLERAHTLRSEMLQNNLVL---DSTTQTIMICGLCKRGLVDEAMQIFDEM 443
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ----------------------- 140
+ G P V+T N + D ++G++EEA L M
Sbjct: 444 GEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESL 503
Query: 141 RDVNPNTCTYNTLMDGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
R + + C ++ + G DV +YN LING CK RN++ AV L +E+
Sbjct: 504 RKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQL 563
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+GI D TY TL IDGL + +AM +F I ++
Sbjct: 564 KGISPDEITYGTL-----------------IDGLLRAHRENDAMMLFQNILQSGSSPSLS 606
Query: 257 TCNCLIDGLCKIGRLKIAWDIF 278
N ++ LC++ +L A +++
Sbjct: 607 IYNSMMRSLCRMKKLSQAINLW 628
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 141/340 (41%), Gaps = 48/340 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------- 65
P ++T+N+LI G EGR+ EA LF K+ + +P++ TL
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTLGANQVRDSESLRKLVH 508
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQG 107
L A L +++ GV+ PDVVT +I+GLCK DG + +G
Sbjct: 509 DMCQSGQVLKAYKLLRSIIDS-GVV--PDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+ PD +T + D L + + +A L + ++Q +P+ YN++M K +
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREM----LSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ L Y E + +E+ L +G+R + + + +I++ P Y
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVR-ELIKIDQEYGSISSNP-----Y 679
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ++ GL + +A+++F + +T C LI+ LC L A DI +
Sbjct: 680 TIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALS 739
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ V N ++ C + Q A L M G +
Sbjct: 740 KSIILSQPVG-NRLLRWLCICYRRQDAQALAWRMHLVGYD 778
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L ++ + P+++TF+++I C EG ++EA ++F+ + PNV +
Sbjct: 327 GRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMY 386
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NTL A L+EEM ++ G+ PD T ++ G K G D
Sbjct: 387 NTLMSGYFKARDVCQANMLYEEMRDK-GI--APDGATFNILVAGNYKYGKEADSYELFRD 443
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
+ PD +V L G+++EA LE M+++ + P+ +N+++ ++
Sbjct: 444 WSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGF 503
Query: 162 KGCRHDVYSYNILIN-------------GYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ H Y ++ G K +++A L +M+ +G+ + +
Sbjct: 504 EDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTV 563
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + PD+ ++ +IDGL K G V EA + FS +
Sbjct: 564 LLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKG 623
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V N LI GLC G+L A + M+ GL PD+ T NI+I+GFCKEG+ + A
Sbjct: 624 FVPNNFVYNSLIHGLCNCGKLHEALKL-EREMRQKGLLPDIFTTNIIINGFCKEGRMKSA 682
Query: 311 NGLLLDMEETGLEPN 325
+M G+ P+
Sbjct: 683 FDAFAEMHHIGVTPD 697
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 151/339 (44%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
P+ TFN L+ G G+ ++ LF+ ++ P+ ++ A+
Sbjct: 415 APDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQ 474
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
E+M+ E G+ P VV ++I + GF M+ G+ P T + M
Sbjct: 475 FLEDML-EKGM--PPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLL 531
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWW---SKGCRH 166
LSK G+++EA LL MI + + N + L+DG+ W+ ++G
Sbjct: 532 GLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICP 591
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +++ I+G K VE+A EM +G P++ VY +
Sbjct: 592 DAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGF-----------------VPNNFVYNSL 634
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL G + EA+K+ + + I T N +I+G CK GR+K A+D F M + G
Sbjct: 635 IHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAE-MHHIG 693
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TPD VTYN +I G+CK A+ L M +G +P+
Sbjct: 694 VTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPD 732
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 52/356 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + L +S P+ ++ + GLC G++ EA + + + P+V+ F
Sbjct: 432 GKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAF 491
Query: 62 NT-LALVALNLFEEMVNE-------FGVICKPDVVTCTNIIDGLCKDGF----------M 103
N+ +A + FE+ ++ FG++ P TC++++ GL K G M
Sbjct: 492 NSVIAAYSRAGFEDNAHKAYKIMLMFGLV--PSSSTCSSMLLGLSKKGRLQEARDLLYKM 549
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+D+G+ + V V+ D K G A+ L M R + P+ ++ +DG +
Sbjct: 550 IDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLV 609
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
KG + + YN LI+G C + +A+ L REM +G+ D T N +
Sbjct: 610 EEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNII 669
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
I+G K G + A F+ + + T N LI G CK+
Sbjct: 670 -----------------INGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVL 712
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ D F M G PD+ TYNI I GFC + +A +L ++ G+ PN
Sbjct: 713 DM-VSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPN 767
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 50/331 (15%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI--- 82
FN +I C +G + A L + FCC+P+V +N L + A + + G +
Sbjct: 281 FNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNIL-INAYRIRGRTSDALGFLHLM 339
Query: 83 ----CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKM 128
CKP ++T + II C +G +++ G+ P+V N + K +
Sbjct: 340 IKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDV 399
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWS-KGCRHDVYSYNIL 174
+AN L E M + + P+ T+N L+ G F WS D Y++
Sbjct: 400 CQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVS 459
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+ G C +++A+ +ML +G+ PP + + I + G
Sbjct: 460 VAGLCWAGQLDEAMQFLEDMLEKGM-----------------PPSVVAFNSVIAAYSRAG 502
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
F A K + + V + TC+ ++ GL K GRL+ A D+ + ++ + GL + V +
Sbjct: 503 FEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMI-DKGLPVNKVAF 561
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G+ K G A+ L +ME G+ P+
Sbjct: 562 TVLLDGYFKVGDTAGAHSLWYEMEARGICPD 592
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 129/339 (38%), Gaps = 84/339 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +++ N V F L+ G G A L+ ++ P+ I F
Sbjct: 537 GRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAF 596
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF----------MMD 105
+ L L EE F + K P+ ++I GLC G M
Sbjct: 597 SAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQ 656
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G+ PD+ T N++ + K+G+M+ A M V P+T TYNTL+ G+
Sbjct: 657 KGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVS 716
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
++ G D+ +YNI I G+C + + AV++ E+++ G+ + TYNT+
Sbjct: 717 ADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMN 776
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
A+ C ++ L L K+
Sbjct: 777 AV-------------------------------------CTDMLDRAMVLTAKLLKM--- 796
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
P+VVT N+++ FCK+G +KA
Sbjct: 797 --------------AFVPNVVTTNVLLSHFCKQGMPEKA 821
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 59/325 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ + N+L++G E+ + ++ P+ + L + L V +
Sbjct: 204 YESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLR-----VGD 258
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+G + K ++ G+ +DG RP N+M + G + A LL VM
Sbjct: 259 YGSVWK--------LLRGMIRDG------PRPCNHNFNIMILCFCQKGYLRVAESLLFVM 304
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
P C C DVY+YNILIN Y DA+ M+ G
Sbjct: 305 ------PKFC---------------CEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNG 343
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+ T++T+ A N + P+ +Y T + G +K V +A
Sbjct: 344 CKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQAN 403
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ + + T N L+ G K G+ ++++F + L PD Y++ + G
Sbjct: 404 MLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLS-SLVPDCSLYDVSVAG 462
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C GQ +A L DM E G+ P+
Sbjct: 463 LCWAGQLDEAMQFLEDMLEKGMPPS 487
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 165/363 (45%), Gaps = 55/363 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + PN F+ L+ + ++ EA +F K+ +PN +T+ + +
Sbjct: 250 LLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILC 309
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+ FE+M++E G+ P + ++I GLC M+D+G+
Sbjct: 310 KSGRVEDAMLYFEQMIDE-GL--SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 366
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + D+ K+G++ E+ L ++M++ V P+ TY+TL+DG+ K
Sbjct: 367 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 426
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
G + D +Y+ LINGYCK ++DA+ L REM S G+ D TYN + +
Sbjct: 427 ASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQT 486
Query: 217 PPDS------------------HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ Y + GL KN +A+++F + L T
Sbjct: 487 RRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTF 546
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +ID L K+GR A D+F N GL P+ TY +M +G ++ + L L ME
Sbjct: 547 NIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 605
Query: 319 ETG 321
+ G
Sbjct: 606 DNG 608
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 161/354 (45%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V+++++I G EG + + + ++ PNV+T+N++ AL ++ +
Sbjct: 86 PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEV 145
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT N + D L K
Sbjct: 146 LTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCK 205
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P TY TL+ G+A G + Y
Sbjct: 206 NGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 265
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
++IL+ Y K VE+A+ + +M +G+ +A TY + M
Sbjct: 266 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 325
Query: 213 INNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P + VY + I GL N + + + C+ TI N +ID CK GR+
Sbjct: 326 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI-FFNSIIDSHCKEGRV 384
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F LM G+ PD++TY+ +I G+C G+ +A LL M G++P+
Sbjct: 385 IESEKLFD-LMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 437
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 70/344 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ ++N L+ GLC E R EA L L++ D G
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALEL---LHIMADD------------------------G 81
Query: 81 VICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
C PDVV+ + +I+G K+G M+DQ + P+VVT N + L K +++
Sbjct: 82 GDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDK 141
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A +L M++ V P+ TYN+++ GF S G DV +YN L++
Sbjct: 142 AMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMD 201
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPP 218
CK+ +A + M G++ + TTY TL M N + P
Sbjct: 202 YLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +V++ + K V EAM VFS + T +I LCK GR++ A F
Sbjct: 262 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 321
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
++ + GL+P + YN +IHG C + ++A L+L+M + G+
Sbjct: 322 EQMI-DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 364
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 55/365 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
+L ++ S P+ +T+NS++ G C+ G+ EA KK+ +P+V+T+N+L
Sbjct: 145 VLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLC 204
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A +F+ M G+ KP++ T ++ G G M+ G+ P
Sbjct: 205 KNGRCTEARKIFDSMTKR-GL--KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 261
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWW 160
+ +++ +K K+EEA + M Q+ +NPN TY ++ D ++
Sbjct: 262 NHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 321
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
+ G YN LI+G C E A L EML GI + +N++
Sbjct: 322 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 381
Query: 210 -----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V PD Y+T IDG G + EA K+ +++ + T
Sbjct: 382 GRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 441
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ LI+G CKI R+K A +F M++ G++PD++TYNI++ G + + A L + +
Sbjct: 442 STLINGYCKISRMKDALVLFRE-MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGIT 500
Query: 319 ETGLE 323
++G +
Sbjct: 501 KSGRQ 505
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 38/234 (16%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDV + N++ + L + + +EA LL +M DG C DV
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMAD--------------DG-----GDCPPDVV 89
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
SY+ +ING+ K+ +++ S EML + I + TYN++ A+
Sbjct: 90 SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ V PD Y + + G +G EA+ + + + T N L+D LCK GR
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A IF M GL P++ TY ++ G+ +G + +GLL M G+ PN
Sbjct: 210 TEARKIFDS-MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 262
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 159/336 (47%), Gaps = 52/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE---EMV 76
N+V +N LI GLC + ++ EA + K L P+V+T+ TL L + FE EM+
Sbjct: 261 NIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMM 320
Query: 77 NEFGVIC---KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+E ++C P +++++GL K G ++D G+ P++ N + D+L
Sbjct: 321 DE--MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC 378
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K K EA L + M + + PN TY+ L+D F K G + VY
Sbjct: 379 KGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVY 438
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
YN LING+CK ++ A EM+++ + TY +L + G
Sbjct: 439 PYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL-----------------MGG 481
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
G + +A++++ + +I T L+ GL + G ++ A +F+ M + P
Sbjct: 482 YCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE-MAEWNVKP 540
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ VTYN+MI G+C+EG KA L +M E G+ P+
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 49/367 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G ++ +L F+P+ +SL++GL G+I EA L K++ F PN+ +N L
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375
Query: 65 ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+L F E + + G I +P+ VT + +ID C+ G M+D G++
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKL 435
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
V N + + K G + A + MI + + P TY +LM G+
Sbjct: 436 SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KG +Y++ L++G + + DAV L EM ++ + TYN +
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + PD++ Y I GL G EA + C L
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
L+ G C+ G+L+ A + ++Q G+ D+V Y ++I G K + GLL +M
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQR-GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 319 ETGLEPN 325
+ GL+P+
Sbjct: 675 DRGLKPD 681
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 111/442 (25%), Positives = 175/442 (39%), Gaps = 125/442 (28%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A+ GF + ++ P +VT+ SL+ G C++G+I +A RL+ ++ P++ TF T
Sbjct: 455 AAEGF--MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512
Query: 64 L-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
L L+ A+ LF EM E+ V KP+ VT +I+G C++G M
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMA-EWNV--KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMT 569
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
++G+ PD + + L G+ EA ++ + + + N Y L+ GF K
Sbjct: 570 EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G D+ Y +LI+G K ++ + L +EM G++ D Y ++
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689
Query: 211 MAINNVP------------------PDSHVYTTYIDGLYKNGFVLEA------MKVFSAI 246
A + P+ YT I+GL K GFV EA M+ S++
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSV 749
Query: 247 GN---HKCVLTI--------------------------ETCNCLIDGLCKIGRLKIAWDI 277
N + C L I T N LI G C+ GR++ A ++
Sbjct: 750 PNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASEL 809
Query: 278 FHML----------------------------------MQNPGLTPDVVTYNIMIHGFCK 303
+ M G+ PD V YN +IHG C
Sbjct: 810 ITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCV 869
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G+ KA L +M GL PN
Sbjct: 870 AGEMGKATELRNEMLRQGLIPN 891
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 34/269 (12%)
Query: 88 VTCTNIIDGLCKDGFMMDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
V ++DG+ M+ + + P+V TL+ + L K A L M+ + P+
Sbjct: 167 VRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPD 226
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y ++ + GC ++ YN+LI+G CK + V +AV + +
Sbjct: 227 VYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKK 286
Query: 193 EMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYKNG 234
++ + ++ D TY TL + V P ++ ++GL K G
Sbjct: 287 DLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRG 346
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ EA+ + + + + N LID LCK GR ++ M GL P+ VTY
Sbjct: 347 KIEEALNLVKRVVDFGVSPNLFVYNALIDSLCK-GRKFHEAELLFDRMGKIGLRPNDVTY 405
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+I+I FC+ G+ A L +M +TGL+
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLK 434
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 33/202 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN VT+ ++I GLC G + EA L K+ PN +T+ F +++ +
Sbjct: 715 PNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGC--------FLDILTKGE 766
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
V + V I+ GL + T N++ + G++EEA+ L+ MI
Sbjct: 767 VDMQKAVELHNAILKGLL-----------ANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 141 RDVNPNTCTYNTLMD----------GFAWW----SKGCRHDVYSYNILINGYCKDRNVED 186
V+P+ TY T+++ W KG R D +YN LI+G C +
Sbjct: 816 DGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGK 875
Query: 187 AVSLCREMLSEGIRADATTYNT 208
A L EML +G+ + T T
Sbjct: 876 ATELRNEMLRQGLIPNNKTSRT 897
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+++LI Y + R V D V + + M+++ ++ P+ + + GL
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITK----------------VSLLPEVRTLSALLHGL 202
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K AM++F+ + + + +I LC++ L A ++ M+ G +
Sbjct: 203 VKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAH-MEATGCDVN 261
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V YN++I G CK+ + +A G+ D+ L+P+
Sbjct: 262 IVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPD 296
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 54/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++VT+N LI G+C EGR+ EA + + + C PNVIT N + + A L
Sbjct: 115 PDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKL 174
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+M+ + C P VVT +I+ LC+ G M G P+ ++ N +
Sbjct: 175 LSDMLRKG---CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K+ KM+ A L++M+ R P+ TYNTL+ SKGC
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 291
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+ +YN +I+G K E A+ L EM +G++ D TY++L +
Sbjct: 292 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSL-----------------V 334
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL + G V EA+K F + T N ++ GLCK + A D F M +
Sbjct: 335 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID-FLAYMISKRC 393
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
P TY I+I G EG ++A LL ++ GL
Sbjct: 394 KPTEATYTILIEGIAYEGLAKEALDLLNELCSRGL 428
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 45/282 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ L +EM N+ KPDVVT +I+G+CK+G M G +P+V+T N+
Sbjct: 101 AMKLLDEMRNKGS---KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNI 157
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KG 163
+ ++ G+ +A LL M+++ +P+ T+N L++ G
Sbjct: 158 ILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG 217
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C + SYN L++G+CK++ ++ A+ M+S G D TYNTL A
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA----------- 266
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
L K+G V A+++ + + + C + T N +IDGL K+G+ + A + M+
Sbjct: 267 ------LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE-MR 319
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL PD++TY+ ++ G +EG+ +A D+E G+ PN
Sbjct: 320 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 361
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 50/342 (14%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+ L CF+ + F+ ++ C E + +A +L ++ P+V+T+N L +
Sbjct: 74 QTLFPCFS--LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEG 131
Query: 71 LFEEMV----NEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLN 116
+E + N C+P+V+T I+ +C G MD +G P VVT N
Sbjct: 132 RLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFN 191
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSK 162
++ + L + G + A +LE M PN+ +YN L+ GF S+
Sbjct: 192 ILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSR 251
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC D+ +YN L+ CKD V+ AV + ++ S+G TYNT+
Sbjct: 252 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV------------- 298
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDGL K G A+K+ + I T + L+ GL + G++ A FH L
Sbjct: 299 ----IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDL- 353
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ G+ P+ +TYN ++ G CK Q +A L M +P
Sbjct: 354 EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKP 395
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L +P++VTFN LI LC +G + A + +K+ + C PN +++
Sbjct: 166 GRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 225
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A+ + MV+ C PD+VT ++ LCKDG
Sbjct: 226 NPLLHGFCKEKKMDRAIEYLDIMVSRG---CYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ +G P ++T N + D LSK GK E A LL+ M ++ + P+ TY++L+ G + K
Sbjct: 283 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 342
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G R + +YN ++ G CK R + A+ M+S+ + TY
Sbjct: 343 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 402
Query: 209 LFMAI 213
L I
Sbjct: 403 LIEGI 407
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
++ Y+ K V +AMK+ + N + T N LI+G+CK GRL A + M
Sbjct: 85 FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN-M 143
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G P+V+T+NI++ C G+ A LL DM G P+
Sbjct: 144 PSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPS 186
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL + P+++T++SL+ GL EG++ EA + F L PN IT
Sbjct: 305 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAIT 364
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
+N++ L A++ M+++ CKP T T +I+G+ +G +
Sbjct: 365 YNSIMLGLCKSRQTDRAIDFLAYMISKR---CKPTEATYTILIEGIAYEGLAKE 415
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 149/366 (40%), Gaps = 73/366 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G AS F + + PN++ F SLI GLC G I +A
Sbjct: 280 GFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQA------------------- 320
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRP 110
+ EEMV + KP+V T T +IDGLCK G+ + +P
Sbjct: 321 -------FEMLEEMVKKGW---KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKP 370
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+V T M K+ K+ A LL M ++ + PNT TY L+DG +
Sbjct: 371 NVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELM 430
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+G ++++YN I+ CK +A L ++ G++AD TY L
Sbjct: 431 DLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRR 490
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V PD H Y T I + + E+ K+F+ V T ET
Sbjct: 491 ADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETY 550
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+I G C+ + +A F+ M + G TPD +TY +I G CKE + +A L M
Sbjct: 551 TSMICGYCRDRNVSLALKFFNR-MSDHGCTPDSLTYGALISGLCKESKLDEACQLYEAMV 609
Query: 319 ETGLEP 324
+ GL P
Sbjct: 610 DKGLSP 615
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 139/323 (43%), Gaps = 55/323 (17%)
Query: 37 GRILEAARLFKKLNVFCCDPNVITFNTLALVALNL---------FEEMVNEFGVICKPDV 87
G + A +F ++ V P+ +++ +A+ + ++MV V+ D
Sbjct: 210 GLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVV---DN 266
Query: 88 VTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEV 137
TCT +I C+ GF ++ G++P+++ + + L K G +++A +LE
Sbjct: 267 ATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEE 326
Query: 138 MIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HDVYSYNILINGYCKDR 182
M+++ PN T+ L+DG W K R +V++Y +I+GYCK+
Sbjct: 327 MVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKED 386
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ A L M +G+ P++ YT IDG K G +A ++
Sbjct: 387 KLNRAEMLLSRMKEQGL-----------------VPNTKTYTCLIDGHSKAGNFEKAYEL 429
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+G I T N ID LCK GR A + + GL D VTY I+I C
Sbjct: 430 MDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFR-LGLQADTVTYTILISELC 488
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
+ ++A M + G++P+
Sbjct: 489 RRADTREALVFFSKMFKAGVQPD 511
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA+ + + NH VLT+ T NC+ ++G + A ++F M+ G+ PD V+
Sbjct: 175 GKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDE-MRVRGVCPDSVS 233
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGL 322
Y +M +C+ G+ + L DM G
Sbjct: 234 YKLMAIAYCRMGRISDTDRWLKDMVRRGF 262
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 144/329 (43%), Gaps = 57/329 (17%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----------A 65
M C P++ T+N LI C+ GRI EA ++ PN ++ L
Sbjct: 339 MGC-EPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYV 397
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
+ + LF+ + E G KPD+V+ I G G MM++G+ PD
Sbjct: 398 MASDMLFK--IAETG--DKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIY 453
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWS 161
NV+ L K G+ A LL M+ ++ P+ Y TL+DGF S
Sbjct: 454 NVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMS 513
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
KG V YN++I G CK + DAVS + M I N PD +
Sbjct: 514 KGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNK-----------------MKIANHAPDEY 556
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++T IDG K + A+K+F + K + LI+G CKI + A +F
Sbjct: 557 THSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRA- 615
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
MQ+ L P+VVTY I+I GF K G+ +KA
Sbjct: 616 MQSFNLEPNVVTYTILIGGFSKTGKPEKA 644
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 159/388 (40%), Gaps = 84/388 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+V +N +I G C +G + A R+F++L + P + T+ L + +++
Sbjct: 238 PNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQL 297
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+NE V+ +V +IID K G M + G PD+ T N++ +
Sbjct: 298 LNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCS 357
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYS 170
G+++EA LE +R + PN +Y LM F G + D+ S
Sbjct: 358 GGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVS 417
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------FMAIN------- 214
Y I+G ++ A+ + +M+ +G+ DA YN L F A
Sbjct: 418 YGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEML 477
Query: 215 --NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR-- 270
N+ PD+++Y T +DG +N + +A ++F + + + N +I GLCK G+
Sbjct: 478 DLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMT 537
Query: 271 ---------------------------------LKIAWDIFHMLMQNPGLTPDVVTYNIM 297
L A +F +M+ P+VV Y +
Sbjct: 538 DAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQK-YKPNVVAYTSL 596
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+GFCK +A + M+ LEPN
Sbjct: 597 INGFCKIADMSRAEKVFRAMQSFNLEPN 624
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 129/319 (40%), Gaps = 36/319 (11%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ +N L+ GLC +GR A L ++ P+ + TL + N ++
Sbjct: 448 PDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATEL 507
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSK 124
F V+ P VV +I GLCK G M D PD T + + D K
Sbjct: 508 FEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVK 567
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
++ A + M+++ PN Y +L++GF A S +V +
Sbjct: 568 QHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVT 627
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y ILI G+ K E A S ML + TT++ L + N+ T I+
Sbjct: 628 YTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNT----TLLIEKN 683
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+N L + F+ + + I T N +I LCK G + A + M G D
Sbjct: 684 EENDRSL-ILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTA-QLLQTKMLRKGFLMD 741
Query: 291 VVTYNIMIHGFCKEGQHQK 309
V ++ ++HG C+ G+ ++
Sbjct: 742 SVCFSALLHGLCQTGKSKE 760
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 145/363 (39%), Gaps = 58/363 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---------ALVA 68
F P + NS+I G + +A ++F + ++ C P V+ N+L VA
Sbjct: 124 FKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCVVANNSLLNCLVKNGKVDVA 183
Query: 69 LNLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVT 114
L+++M+ + G+ D + ++ GLC G +++G + P+VV
Sbjct: 184 CELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVG-KVEEGRKLIDDRWGNGCVPNVVF 242
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
NV+ D K G ++ A + E + + P TY L+DGF K
Sbjct: 243 YNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMN 302
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
G +V +N +I+ K V+ A + R M G D TTYN L
Sbjct: 303 VMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIK 362
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ P+ YT + K G + A + I + + I
Sbjct: 363 EAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFI 422
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G G + +A + +M+ G+ PD YN+++ G CK+G+ A LL +M + L
Sbjct: 423 HGSVAGGEIDVALMVREKMMEK-GVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNL 481
Query: 323 EPN 325
+P+
Sbjct: 482 QPD 484
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 129/321 (40%), Gaps = 103/321 (32%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+ G+++ + PN+V + SLI G C + A ++F+ + F +PNV+T+ L
Sbjct: 577 MFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTIL----- 631
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
I G K GK E
Sbjct: 632 ------------------------IGGFSK-------------------------TGKPE 642
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
+A E+M+ + PN T++ L++G ++ + +LI ++N E+ S
Sbjct: 643 KAASFFELMLMNNCLPNDTTFHYLINGLT--------NITNTTLLI-----EKNEENDRS 689
Query: 190 LCRE----MLSEGIRADATTYNTLFMAI--NNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
L + M+SEG TYN++ + + + + + + T + + GF+++++ F
Sbjct: 690 LILDFFATMISEGWSQVIATYNSIIVCLCKHGMVDTAQLLQT---KMLRKGFLMDSV-CF 745
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLK-----IAWDIFHMLMQNPGLTPDVVTYNIMI 298
SA L+ GLC+ G+ K I+ D+ + Q Y++ +
Sbjct: 746 SA---------------LLHGLCQTGKSKEWRNIISGDLTKIDFQT------AFEYSLKL 784
Query: 299 HGFCKEGQHQKANGLLLDMEE 319
+ +G+ +A+ +LL++ E
Sbjct: 785 DKYLYDGKPSEASYILLNLIE 805
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 147/318 (46%), Gaps = 49/318 (15%)
Query: 55 DPNVITFNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIID----------GLC 98
P +I FN L ++V + +E +V+ F + K +V T + +I+ G
Sbjct: 37 QPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFS 96
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
G + +G +PDVV + D + + GK E A LL+ M P+ T N+LM G+
Sbjct: 97 VFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYC 156
Query: 159 WW--------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
SKG + DVYSY+I INGYCK +++A+ L EM G+ +A
Sbjct: 157 SQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAV 216
Query: 205 TYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
TYNTL A+ + PD Y+T +DG K G + E + +F +
Sbjct: 217 TYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEM 276
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ +I+G+C+ ++K A ++ L+ GL PDV TY ++ G C+EG
Sbjct: 277 QRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE-GLKPDVHTYTALVDGLCREGS 335
Query: 307 HQKANGLLLDMEETGLEP 324
+A L MEE G P
Sbjct: 336 IIEALRLFRKMEEDGCMP 353
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 54/324 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
GF + G+ L F P++V F +LI G+C G+ AA L K++ + C P+V+T N+L
Sbjct: 94 GFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMR 153
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF--MMDQG 107
+F MV++ G+ KPDV + + I+G CK + F M +G
Sbjct: 154 GYCSQGKIDKVRKIFHLMVSK-GL--KPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRG 210
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+ P+ VT N + L + + +A L M ++P+ Y+TL+DGF
Sbjct: 211 VVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEML 270
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ + D+ Y I+ING C+ R V+DA + ++ EG++
Sbjct: 271 VLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLK------------- 317
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD H YT +DGL + G ++EA+++F + C+ + N L+ G +
Sbjct: 318 ----PDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTST 373
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIM 297
+ H M + G D VT +
Sbjct: 374 VVQLIHE-MADRGFYADAVTRTFL 396
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 120/266 (45%), Gaps = 33/266 (12%)
Query: 92 NIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
N+ D L M+D+ +P ++ N + ++ + K E L + M R + N CT +
Sbjct: 20 NLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLS 79
Query: 152 TLMD----------GFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
L++ GF+ + K G + DV + LI+G C+ E A L +EM
Sbjct: 80 ILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLV 139
Query: 198 GIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
G D T N+L M + PD + Y+ +I+G K + EA
Sbjct: 140 GCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEA 199
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
M++F + + V T N LI LC+ R + A +F M GL+PD++ Y+ ++
Sbjct: 200 MELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRK-MCACGLSPDILAYSTLLD 258
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK+G + L +M+ ++P+
Sbjct: 259 GFCKQGNLDEMLVLFQEMQRRLVKPD 284
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L R+++ P++ T+ +L+ GLC EG I+EA RLF+K+ C P ++N L
Sbjct: 307 VLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQ--- 363
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
G + D T +I M D+G D VT + D L
Sbjct: 364 ----------GCLQHNDTSTVVQLIHE------MADRGFYADAVTRTFLKDFL 400
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 154/344 (44%), Gaps = 52/344 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + F N+ FN L+ C EG I +A ++F ++ P V++FNTL
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTL--------- 281
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + DV G M RPDV T + + + L K+ KM+ A+
Sbjct: 282 --INGYCKVGNLDV--------GFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHR 331
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYC 179
L M +R + PN + TL+ G + SKG + D+ YN L+NG+C
Sbjct: 332 LFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC 391
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K+ ++ A ++ M+ G+R D TY TL M N + D
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRV 451
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++ I G+ K G V++A + + T ++D CK G + + +
Sbjct: 452 GFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKE- 510
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ+ G P+VVTYN++++G CK GQ + A+ LL M G+ P+
Sbjct: 511 MQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPD 554
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ VT+ +LI G C G + A + K+++ + + + F+ L + A
Sbjct: 413 PDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERA 472
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EM+ KPD VT T ++D CK G M G P+VVT NV+ +
Sbjct: 473 LREMLR---AGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNG 529
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-----------DVYS 170
L K G+M+ A+ LL+ M+ V P+ TYNTL++G + +H D+ S
Sbjct: 530 LCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANASKHYKQKPEIGIVADLAS 589
Query: 171 YNILIN 176
Y L+N
Sbjct: 590 YKSLVN 595
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
TY+D GF+ + ++ F H V+ I C L+D + K+ W F+M + +
Sbjct: 179 TYMDL----GFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWG-FYMEILD 233
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G +V +NI+++ FCKEG A + ++ + L P
Sbjct: 234 AGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRP 273
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A GF LL + PN+VT+N L+ GLC G++ A L + P+ IT+
Sbjct: 499 GDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITY 558
Query: 62 NTL 64
NTL
Sbjct: 559 NTL 561
>gi|449468059|ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 225
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 188 VSLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDG 229
++L EML G R +ATTY TL + + DS +Y ++DG
Sbjct: 1 MNLYNEMLQVGKRPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDG 60
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L KNG + EAM+ F+ + ++ L IE+ NCLIDGLCK G+L+ AW++F L Q GL
Sbjct: 61 LCKNGCLYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQ-EGLQS 119
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYNIMIHGFCK GQ KAN L MEE G P+
Sbjct: 120 DVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPD 155
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 32/226 (14%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G RP+ T + L + GK+ +A L V+ ++ ++C Y +DG
Sbjct: 7 MLQVGKRPNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGC 66
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S + D+ SYN LI+G CK +E A L ++ EG+++D TYN
Sbjct: 67 LYEAMEHFNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNI 126
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ I G K G V +A +F + + C I T N L+ G C+
Sbjct: 127 M-----------------IHGFCKVGQVDKANILFEKMEENGCTPDIITYNTLLCGFCQS 169
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ + H ++Q ++PD ++ NI+I K+ ++Q+ LL
Sbjct: 170 NKSDEVVKLLHKMIQRD-MSPDAISCNIVIDMLRKDEKYQECLDLL 214
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN T+ +L+ GL G++ +A +LF+ L + + + L E +
Sbjct: 14 PNATTYGTLLTGLFQTGKVGDAKKLFRVLKTYGISADSCIYRIFLDGLCKNGCLYEAMEH 73
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSK 124
F + K D+ + +IDGLCK G + +G++ DVVT N+M K
Sbjct: 74 FNQLKSYNIKLDIESYNCLIDGLCKAGKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCK 133
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
G++++AN L E M + GC D+ +YN L+ G+C+
Sbjct: 134 VGQVDKANILFEKMEEN---------------------GCTPDIITYNTLLCGFCQSNKS 172
Query: 185 EDAVSLCREMLSEGIRADATTYN 207
++ V L +M+ + DA + N
Sbjct: 173 DEVVKLLHKMIQRDMSPDAISCN 195
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L ++ ++VT+N +I G C G++ +A LF+K+ C P++IT+
Sbjct: 100 GKLETAWELFEKLYQEGLQSDVVTYNIMIHGFCKVGQVDKANILFEKMEENGCTPDIITY 159
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
NTL N +E+V M+ + M PD ++ N++
Sbjct: 160 NTLLCGFCQSNKSDEVVKLLHK---------------------MIQRDMSPDAISCNIVI 198
Query: 120 DNLSKDGKMEE 130
D L KD K +E
Sbjct: 199 DMLRKDEKYQE 209
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 157/340 (46%), Gaps = 55/340 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
S + P+ V+++ LI GL G++ E+ ++ ++ + P++ +++L
Sbjct: 74 SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDH 133
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNV 117
A +LF+EM+ PD + +I GLC+ G + D G +P+V NV
Sbjct: 134 ASSLFDEMIRGGH---HPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNV 190
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ L G++E+AN L M +P+ TYNTL+D A + G
Sbjct: 191 LLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+V +++ LI+G C+ +E A+ + ML G + P+ + Y
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK-----------------PNKYTY 293
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC-NCLIDGLCKIGRLKIAWDIFHMLM 282
TT I GL + V++A ++F + C+ N LI G CK G + A ++ +
Sbjct: 294 TTLISGLCRAEKVIQARELFEKM-TQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMS 352
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL P +VT+N +I GFCK G+ +AN L+ +M GL
Sbjct: 353 GGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 392
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 170/401 (42%), Gaps = 91/401 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIK----------------------------- 31
+G+ +L ++M TP+M ++SL++
Sbjct: 93 IGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLM 152
Query: 32 ------GLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALN-LFEEMV 76
GLC G++ +A+ FK++ C PNV +N L L N LF EM
Sbjct: 153 FYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK 212
Query: 77 NEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDNLSKDG 126
+ C PDVVT ++D +CK +G + + MR P+V+T + + L + G
Sbjct: 213 SHS---CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTG 269
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------FAWWSKGC-RHDVYSYN 172
++E+A + M++ PN TY TL+ G F ++ C D +YN
Sbjct: 270 ELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYN 329
Query: 173 ILINGYCKDRNVEDAVSLCREML-SEGIRADATTYNTLF------------------MAI 213
LI GYCK ++++A L REM G++ T+NTL M
Sbjct: 330 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT 389
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ DS Y I GL + + EA++V+ + K +L +C + GLCK G +
Sbjct: 390 KGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQ 449
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
A+ +F ++ G P+ T+ I+ K G+ + A L+
Sbjct: 450 AYAVFEATRKS-GAVPNPETFRILSESLIKLGRVEDAQKLM 489
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 51/318 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+ T++S+IK L E + E+ ++ +++ C+P+V FN GV
Sbjct: 9 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFN-----------------GV 51
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ N+ M++ G +PD V+ +++ L+K GK++E+ +L M+ R
Sbjct: 52 M--QGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMR 109
Query: 142 DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDA 187
P+ Y++L+ A + G D + LI G C+ V+DA
Sbjct: 110 GQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDA 169
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
++M G + + YN L + GL +G + +A +F+ +
Sbjct: 170 SERFKQMPKHGCQPNVPVYNVL-----------------LHGLCSSGQLEQANTLFAEMK 212
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+H C + T N L+D +CK R++ +F M+ G P+V+T++ +IHG C+ G+
Sbjct: 213 SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA-MRAAGYVPNVITFSTLIHGLCRTGEL 271
Query: 308 QKANGLLLDMEETGLEPN 325
+KA + M E G +PN
Sbjct: 272 EKALEVFGSMLEAGCKPN 289
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 33/255 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M D+ + +V T + + +L K+ K EE+ +LE M+ NP+ +N +M GFA
Sbjct: 1 MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + D SY+ILI+G K +++++ + EM+ G Y++
Sbjct: 61 MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120
Query: 209 LFMAINNVP------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ PD ++ I GL + G V +A + F + H
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + N L+ GLC G+L+ A +F M++ +PDVVTYN ++ CK + ++
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAE-MKSHSCSPDVVTYNTLLDAVCKARRVEEG 239
Query: 311 NGLLLDMEETGLEPN 325
L M G PN
Sbjct: 240 CKLFEAMRAAGYVPN 254
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 54/187 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL---- 64
L ++ +C P+ V +NSLI G C G + EA +L+++++ P ++TFNTL
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 371
Query: 65 -ALVALNLFEEMVNEFGV----------------------------ICKP--------DV 87
L L E+V E G + K D
Sbjct: 372 CKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDP 431
Query: 88 VTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
V+C + + GLCK G +DQ G P+ T +++++L K G++E+A L+E
Sbjct: 432 VSCVSFVGGLCKTG-NIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 490
Query: 137 VMIQRDV 143
RD+
Sbjct: 491 PAKARDI 497
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 53/296 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L +++ TPN+VT+ +L GLC G + A L ++ N+ T
Sbjct: 298 LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
+NT+ L A+ L EEM E G+ PD +T T ++D K G M
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEM-KEAGL--HPDTITYTTLMDAYYKTGEMVKARELLR 414
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+D+G++P VVT NV+ + L GK+E+ LL+ M+++ + PN TYN++M +
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
++G D +YNILI G+CK RN+++A L +EM+ + A++YN
Sbjct: 475 NMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYN 534
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
L I G +K +LEA ++F + V + E N +D
Sbjct: 535 AL-----------------IKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVD 573
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 170/376 (45%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL R+ P++V++ ++I G C G + + +L K++ + PN+ T
Sbjct: 123 LGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYT 182
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
++++ L+ + EM+ GV PD V T +IDG CK G
Sbjct: 183 YSSIILLLCKSGKVVEGEKVLREMMKR-GVF--PDHVIYTTLIDGFCKLGNTQAAYKLFS 239
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M + + PD + + + LS GK+ EA+ L MI++ P+ TY L+DG+
Sbjct: 240 EMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLG 299
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G +V +Y L +G CK ++ A L EM +G++ + +TYN
Sbjct: 300 EMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYN 359
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ M + PD+ YTT +D YK G +++A ++ + +
Sbjct: 360 TIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDR 419
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T+ T N L++GLC G+L+ + +++ G+ P+ TYN ++ +C +
Sbjct: 420 GLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEK-GIMPNAATYNSIMKQYCIRNNMRI 478
Query: 310 ANGLLLDMEETGLEPN 325
+ + M G+ P+
Sbjct: 479 STEIYRGMCAQGVVPD 494
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 157/358 (43%), Gaps = 60/358 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + L + P+ + F++LI GL G+++EA +LF ++ +P+ +T
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT 287
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A L +MV + P+VVT T + DGLCK G
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQ---IGLTPNVVTYTALADGLCKSGELDTANELLH 344
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G++ ++ T N + + L K G + +A L+E M + ++P+T TY TLMD +
Sbjct: 345 EMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G + V ++N+L+NG C +ED L + ML +GI +A TYN
Sbjct: 405 EMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYN 464
Query: 208 TLFMAI---NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
++ NN+ + +Y G+ G V ++ T N LI G
Sbjct: 465 SIMKQYCIRNNMRISTEIYR----GMCAQGVVPDS----------------NTYNILIKG 504
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
CK +K AW H M +YN +I GF K + +A L +M GL
Sbjct: 505 HCKARNMKEAW-FLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGL 561
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 149/333 (44%), Gaps = 48/333 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEMV 76
N ++N L+ L G+I EA L ++ C P+V+++ T+ + L ++V
Sbjct: 109 NTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLV 168
Query: 77 NEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
E + KP++ T ++II LCK G MM +G+ PD V + D K
Sbjct: 169 KEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKL 228
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSY 171
G + A L M R++ P++ ++ L+ G + KG D +Y
Sbjct: 229 GNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTY 288
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI+GYCK ++ A L +M+ G+ P+ YT DGL
Sbjct: 289 TALIDGYCKLGEMKKAFFLHNQMVQIGL-----------------TPNVVTYTALADGLC 331
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K+G + A ++ + L I T N +++GLCK G + A + M+ GL PD
Sbjct: 332 KSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEE-MKEAGLHPDT 390
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+TY ++ + K G+ KA LL +M + GL+P
Sbjct: 391 ITYTTLMDAYYKTGEMVKARELLREMLDRGLQP 423
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 115/244 (47%), Gaps = 33/244 (13%)
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
+ N++ ++L + GK+ EA+ LL M + P+ +Y T++DG+
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
KG + ++Y+Y+ +I CK V + + REM+ G+ D Y TL
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M + PDS ++ I GL +G V+EA K+F+ + T L
Sbjct: 232 QAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTAL 291
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
IDG CK+G +K A+ H M GLTP+VVTY + G CK G+ AN LL +M G
Sbjct: 292 IDGYCKLGEMKKAF-FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350
Query: 322 LEPN 325
L+ N
Sbjct: 351 LQLN 354
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 37/144 (25%)
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC------------------- 258
D HV+ + L + G + EA K F + N+ L+ +C
Sbjct: 37 SDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLK 96
Query: 259 -----------------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
N L++ L ++G+++ A + M M+ G PDVV+Y +I G+
Sbjct: 97 VFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLL-MRMEFKGCIPDVVSYTTIIDGY 155
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C G+ QK L+ +M+ GL+PN
Sbjct: 156 CHVGELQKVVQLVKEMQLKGLKPN 179
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 174/376 (46%), Gaps = 55/376 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L +++ TP++V++N+LI G C +G + +A + K + PN +T
Sbjct: 442 LGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVT 501
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
+ L + A +FE+M+ P T +I+GL K G +
Sbjct: 502 YTLLIDGFFKKGDSERAFVVFEQMM---AANIAPTDHTFNTVINGLGKTGRVSETQDKLN 558
Query: 104 --MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ QG +T N + D K+G ++ A M + ++P+ TY +L+DG +
Sbjct: 559 NFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSN 618
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K G + DV +Y+ LI+G+CK ++E A E+L G+ + YN
Sbjct: 619 KIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYN 678
Query: 208 TL---FMAINN---------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
++ F+ +NN VP D VYT+ I GL K G + A+ ++S + +
Sbjct: 679 SMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK 738
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V I LI+GL G+L+ A I M +TP V+ YNI+I G +EG Q+
Sbjct: 739 DIVPDIVMYTVLINGLSNNGQLENASKILKE-MDGNNITPSVLVYNILIAGNFREGNLQE 797
Query: 310 ANGLLLDMEETGLEPN 325
A L +M + GL P+
Sbjct: 798 AFRLHDEMLDKGLVPD 813
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 55/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + L ++ P++V F+ LI G G + +A L+ ++ + PNV
Sbjct: 338 LGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFI 397
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
N+L A LF+E V E G+ +VVT ++ L + G
Sbjct: 398 VNSLLEGFHEQNLLEHAYGLFDEAV-EHGIT---NVVTYNILLKWLGELGKVNEACNLWE 453
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ +G+ P +V+ N + K G M++A +L+ +++R + PN TY L+DGF
Sbjct: 454 KMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKG 513
Query: 162 KGCRHDV--------------YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
R V +++N +ING K V + + +G + + TYN
Sbjct: 514 DSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYN 573
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ IDG +K G V A+ + + + T LIDGLCK
Sbjct: 574 SI-----------------IDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCK 616
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ +A ++ H M+ G+ DVV Y+ +I GFCK + A+ ++ + GL PN
Sbjct: 617 SNKIGLALEM-HSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPN 673
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 136/323 (42%), Gaps = 60/323 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV--- 58
G + FV+ +++ + P TFN++I GL GR+ E KLN F V
Sbjct: 513 GDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQ---DKLNNFIKQGFVSTS 569
Query: 59 ITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---GFMMD- 105
IT+N++ AL + EM E G+ PDV+T T++IDGLCK G ++
Sbjct: 570 ITYNSIIDGFFKEGAVDSALLAYREMC-ESGI--SPDVITYTSLIDGLCKSNKIGLALEM 626
Query: 106 ------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
+GM+ DVV + + D K ME A+ ++ + PNT YN+++ GF
Sbjct: 627 HSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIH 686
Query: 160 WSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+ D+ Y +I G K+ + A+ L EMLS+ I D
Sbjct: 687 LNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVM 746
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y L M NN+ P VY I G ++ G + EA ++ +
Sbjct: 747 YTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEML 806
Query: 248 NHKCVLTIETCNCLIDGLCKIGR 270
+ V T + L++G K+
Sbjct: 807 DKGLVPDDTTYDILVNGKLKVSH 829
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 44/311 (14%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEM 75
T + +++ EG+ E + FK+ + + ++ L +A L +EM
Sbjct: 222 TLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEM 281
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDG-FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
EFG + P T T +I K G F+ ++ ++V++ + + + M+ C+
Sbjct: 282 -REFGWV--PSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMK-GYCV 337
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
L DVN ++ +++G G DV +++LING K ++E A L M
Sbjct: 338 L-----GDVNLALQLFDEVVEG------GVVPDVVIFSVLINGCSKVGDMEKAYELYTRM 386
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
GI+ P+ + + ++G ++ + A +F H +
Sbjct: 387 KLMGIQ-----------------PNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHG-ITN 428
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T N L+ L ++G++ A +++ M + G+TP +V+YN +I G CK+G KA +L
Sbjct: 429 VVTYNILLKWLGELGKVNEACNLWEK-MVSKGITPSLVSYNNLILGHCKKGCMDKAYSML 487
Query: 315 LDMEETGLEPN 325
+ E GL+PN
Sbjct: 488 KSILERGLKPN 498
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 53/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+PN++ ++S+I GLC G + +A L +++ PNV T +L A
Sbjct: 310 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 369
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF +++ KP+V T T +I G CK+ M +QG+ P+ T +
Sbjct: 370 RLFLKLIRSDNY--KPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 427
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDV- 168
D K G +A L+E+M PNTCTYN+++DG F + G ++ +
Sbjct: 428 DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIE 487
Query: 169 ---YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+Y ILI+ CK ++ A+ +M G + PD H+YTT
Sbjct: 488 ADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQ-----------------PDIHLYTT 530
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I + + ++ K+F + T ET +I G C+ ++ +A F M +
Sbjct: 531 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQK-MSDH 589
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G PD ++Y +I G CKE + +A L M + GL P
Sbjct: 590 GCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP 628
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 45/244 (18%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKM---EEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M +QG+ V+T VM + +M E A + + M R V P++CTY
Sbjct: 200 MRNQGL---VLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYK-------- 248
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------I 213
+I GYC++ NV +A EM+ G D T + A +
Sbjct: 249 -------------YIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLV 295
Query: 214 NN------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
N + P+ Y++ I GL K G V +A ++ + + + T L
Sbjct: 296 NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 355
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I GLCK G + A+ +F L+++ P+V TY MI G+CKE + +A L M+E G
Sbjct: 356 IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 415
Query: 322 LEPN 325
L PN
Sbjct: 416 LVPN 419
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 109/269 (40%), Gaps = 53/269 (19%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A N+F+EM GV PD T II G C++G MM++G D TL +
Sbjct: 228 AGNVFDEMSAR-GVY--PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTL 284
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + + A + + ++PN Y+++ I+G
Sbjct: 285 IITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSM---------------------ISG 323
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK +V+ A L EM+ G + P+ + +T+ I GL K G+
Sbjct: 324 LCKRGSVKQAFELLEEMVKNGWK-----------------PNVYTHTSLIHGLCKKGWTE 366
Query: 238 EAMKVF-SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A ++F I + + T +I G CK +L A +F M+ GL P+ TY
Sbjct: 367 RAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER-MKEQGLVPNTNTYTT 425
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G CK G KA L+ M G PN
Sbjct: 426 LIDGHCKAGNFSKAYELMELMSNEGFFPN 454
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
V L ++ F P++ + +LI C + + ++ +LF ++ P T+ ++
Sbjct: 509 ALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMIC 568
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+A+ F++M + C PD ++ +I GLCK+ M+D+G
Sbjct: 569 GYCREKKVSLAVKFFQKMSDHG---CAPDSISYGALISGLCKESRLDEARQLYDTMIDKG 625
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
+ P VT +T K A +LE
Sbjct: 626 LSPCEVTRVTLTYEYCKTEDFASAMVILE 654
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 169/391 (43%), Gaps = 93/391 (23%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+A + +LGR+ N+V N++I+G EG++ A L++ + C P+V T+N
Sbjct: 300 QADEAYAMLGRV----PEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYN 355
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------- 102
L A+ + +EM E G C P++VT + ++ C++G
Sbjct: 356 ILMHGLCKLGRCGSAVRMLDEM-EEKG--CAPNIVTYSTLLHSFCRNGMWDDARAMLDQM 412
Query: 103 ----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
M QG +PD+ T N + +L + +M
Sbjct: 413 SAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQM 472
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKG-----------CRHDVYSYNIL 174
+EA + +++ V N TYNTL+ W +G C DV SYN L
Sbjct: 473 DEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGL 532
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I CK+ NV+ ++ L EM+++GI+ + +YN L I+ L K G
Sbjct: 533 IKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNML-----------------INELCKAG 575
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V +A+++ + N I T N LI+GLCK+G A ++ L N + PD+VTY
Sbjct: 576 KVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKL-PNENVHPDIVTY 634
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NI+I CK A+ LL G+ PN
Sbjct: 635 NILISWHCKVRLLDDASMLLDKAVSGGIVPN 665
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/403 (26%), Positives = 169/403 (41%), Gaps = 81/403 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A +L +LM C ++ TFN ++ GLC G + EAARL ++ + C P+V+T+
Sbjct: 230 GVAEAATLLDEMLLMGCAA-DVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTY 288
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
L L +E G + + +VV +I G +G M +G
Sbjct: 289 GFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCP 348
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW------ 160
PDV T N++ L K G+ A +L+ M ++ PN TY+TL+ F W
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 408
Query: 161 ----------------------------------------SKGCRHDVYSYNILINGYCK 180
S+GC+ D+ +YN +I C
Sbjct: 409 LDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCN 468
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
+ +++A + +L EG+ A+ TYNTL M ++ P D
Sbjct: 469 NDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVS 528
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y I L K G V +M + + + N LI+ LCK G+++ A ++ ++
Sbjct: 529 YNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEML 588
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GLTPD+VTYN +I+G CK G A LL + + P+
Sbjct: 589 -NQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPD 630
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 145/340 (42%), Gaps = 54/340 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA LL + P+ V + ++I L +G + EAA L ++ + C +V T
Sbjct: 193 LGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNT 252
Query: 61 FN--TLALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFMMDQGMR 109
FN L L L E + C P VVT ++ GLC+ + + M G
Sbjct: 253 FNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAM-LGRV 311
Query: 110 PDV--VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
P+V V LN + +GK+ A L E+M SKGC D
Sbjct: 312 PEVNVVMLNTVIRGCLAEGKLARATELYEMM---------------------GSKGCPPD 350
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V++YNIL++G CK AV + EM +G + TY+TL
Sbjct: 351 VHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLD 410
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M+ +S Y I L K+G + EAM++ + + C I T N +I LC
Sbjct: 411 QMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNND 470
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
++ A IF L++ G+ + +TYN +IH G+ Q+
Sbjct: 471 QMDEAEHIFGNLLEE-GVVANGITYNTLIHALLHSGRWQE 509
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 146/352 (41%), Gaps = 89/352 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------------AL 66
P++ T+N L+ GLC GR A R+ ++ C PN++T++TL A+
Sbjct: 349 PDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAM 408
Query: 67 V------------------------------ALNLFEEMVNEFGVICKPDVVTCTNIIDG 96
+ A+ L +EM ++ CKPD+ T II
Sbjct: 409 LDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQG---CKPDICTYNTIIYH 465
Query: 97 LCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
LC + G ++++G+ + +T N + L G+ +E L M+ +
Sbjct: 466 LCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLD 525
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+YN L+ +KG + + +SYN+LIN CK V DA+ L +
Sbjct: 526 VVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSK 585
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
EML++G+ D TYNTL I+GL K G+ A+ + + N
Sbjct: 586 EMLNQGLTPDIVTYNTL-----------------INGLCKVGWTHAALNLLEKLPNENVH 628
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
I T N LI CK+ L A + + G+ P+ T+ +M+ F ++
Sbjct: 629 PDIVTYNILISWHCKVRLLDDASMLLDKAVSG-GIVPNERTWGMMVQNFVRQ 679
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 48/282 (17%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM-----RPDVVTLNV 117
AL+L ++M F V P + ++ L + D ++ + M P T V
Sbjct: 128 ALHLLDQMPRRFAVT--PSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 185
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
L + G+ +A LL M + P+ Y T++ G
Sbjct: 186 AARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMG 245
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C DV ++N ++ G C +V +A L M+ G TY L
Sbjct: 246 CAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFL-------------- 291
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL + EA + + V+ N +I G G+L A +++ M M
Sbjct: 292 ---LRGLCRTRQADEAYAMLGRVPEVNVVM----LNTVIRGCLAEGKLARATELYEM-MG 343
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PDV TYNI++HG CK G+ A +L +MEE G PN
Sbjct: 344 SKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPN 385
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 152/368 (41%), Gaps = 76/368 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA F+L G P+ + N+L+ GL R+ A + F+ P++ TFN
Sbjct: 137 RAYDAFLLAGES-HPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFN 195
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG----------MRPDV 112
T +I GLC+ G + G + P V
Sbjct: 196 T-----------------------------VISGLCRIGQLRKAGDVAKDIKAWGLAPSV 226
Query: 113 VTLNVMTDNLSKDG---KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------- 161
T N + D K G M + LL+ M++ ++P T+ L++G+ S
Sbjct: 227 ATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRV 286
Query: 162 ------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
+G V +YN LI+G C + VE+ V L EM G+ + T+ +
Sbjct: 287 FEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCK 346
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M NV PD +YT IDG + G + +AM V A+ + T
Sbjct: 347 KGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTT 406
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
NCLI G + G + A + M+ G+ DVVTYN++I C +G+ +KA LL +M
Sbjct: 407 YNCLITGFSRSGDWRSASGLLDE-MKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEM 465
Query: 318 EETGLEPN 325
E GLEPN
Sbjct: 466 SEVGLEPN 473
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 58/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLF- 72
+P++ TFN++I GLC G++ +A + K + + P+V T+N+L A N++
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247
Query: 73 -----EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
+EMV E G+ P VT +I+G CK+ M QG+ VVT N
Sbjct: 248 VDMLLKEMV-EAGI--SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---------WSKG----- 163
+ L +GK+EE L+E M ++PN T+ ++ GF W G
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
DV Y ILI+GY + +EDA+++ M +GI + TTYN L
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + D Y I L G V +A+K+ + T N +I G
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G +K A++I M+ +VVTYN+ I FC+ G+ +AN LL +M + L PN
Sbjct: 485 CDKGNIKSAYEI-RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPN 543
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 54/330 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LL ++ + +P VTF LI G C A R+F+++ +V+T+N+L
Sbjct: 250 MLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
+ L EEM + G+ P+ +T ++ G CK G M D + +
Sbjct: 310 CSEGKVEEGVKLMEEM-EDLGL--SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----WWS---- 161
PDVV ++ D + GKME+A + E M ++ ++PN TYN L+ GF+ W S
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 162 ------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KG DV +YN+LI C V AV L EM G+ + TYNT+
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI------ 480
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I G G + A ++ + + + + T N I C+IG++ A
Sbjct: 481 -----------IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
D+ + ++ + L P+ +TY + G ++G
Sbjct: 530 DLLNEML-DKCLVPNGITYETIKEGMMEKG 558
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L+ + +PN +TF ++KG C +G + +A + +P+V+ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
L L E+ + + K P+V T +I G + G M +
Sbjct: 373 TILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-- 163
+G+ DVVT NV+ L G++ +A LL+ M + + PN TYNT++ GF KG
Sbjct: 433 KGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC--DKGNI 490
Query: 164 ------------CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
CR +V +YN+ I +C+ +++A L EML + + + TY T+
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVP---PDSHVYTTYIDGLYKNGFVLEAM 240
+ D + L S+ +RA Y+ +A + P P + + GL V A
Sbjct: 121 IADMLVLALARASQPLRA----YDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K F + + I T N +I GLC+IG+L+ A D+ + + GL P V TYN +I G
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDG 235
Query: 301 FCKE---GQHQKANGLLLDMEETGLEP 324
+CK+ G + LL +M E G+ P
Sbjct: 236 YCKKGGAGNMYHVDMLLKEMVEAGISP 262
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/422 (26%), Positives = 168/422 (39%), Gaps = 121/422 (28%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ TFN++I G C G + A+ L + F PNV ++N L + A L
Sbjct: 217 PSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKL 276
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
FEEM C+P VVT ++D LC +G M + G++ + +T NV+ D
Sbjct: 277 FEEMHRSG---CEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDG 333
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNT-------------------------LMDG 156
+K G+M++A M R + P++CT+N L DG
Sbjct: 334 YAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLADG 393
Query: 157 F---------------AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
AW +G V +N LI Y K+ E+A L R M
Sbjct: 394 MDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMN 453
Query: 196 SEGIRADATTYNTLFMAINN---------------------------------------- 215
G+ ++T+N L M + N
Sbjct: 454 KLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASFREGNAVC 513
Query: 216 ------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ PD ++ YI+GL + +V EA + F+ + V T N +I
Sbjct: 514 ALKCWDDMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIIS 573
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ G + A + + QN GL PD+ T NI+I G C+EG+ + + LLLDM GL
Sbjct: 574 ALCRAGNMTEALKLQQNMRQN-GLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLT 632
Query: 324 PN 325
P+
Sbjct: 633 PD 634
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 64/343 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A+ +L R+ S TP++ +L++ L G + A +F+++ P++ TF
Sbjct: 163 GMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGPRPSLATF 222
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF----- 102
N + L VA L M EFG++ P+V + +I G C +D F
Sbjct: 223 NAMILGFCHRGLVRVASGLLGIM-GEFGIV--PNVCSYNILIKGHCVFGWSRDAFKLFEE 279
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G P VVT N++ D L +G+M EA L + M Q + NT T+N
Sbjct: 280 MHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFN----------- 328
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+LI+GY K ++ A + REM + G+ D+ T+N +
Sbjct: 329 ----------VLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNII------------- 365
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
G YK G + + G+H + + + L+ LC RL AW++ +
Sbjct: 366 ----AAGAYKFGHAAQLVHDHDMFGSH---MLADGMDMLVCRLCWDCRLDDAWELLRGAI 418
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G V +N +I + KEG H++A L M + GL P+
Sbjct: 419 EQ-GAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPS 460
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 158/385 (41%), Gaps = 79/385 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L + N +TFN LI G GR+ +A ++++ P+ TF
Sbjct: 303 GRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTF 362
Query: 62 NTLALVALNL--FEEMVNE---FG----------VICK---------------------- 84
N +A A ++V++ FG ++C+
Sbjct: 363 NIIAAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGA 422
Query: 85 PDVVTCTNII------DGLCKDGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
P VT N + +GL ++ F M G+ P T N + L G+++EA
Sbjct: 423 PLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQL 482
Query: 134 LLEVMIQRDVNPNT----CTYNTLMDGFAW-----WSK----GCRHDVYSYNILINGYCK 180
LLE M+ + +T C + +G A W G + D +++ ING C+
Sbjct: 483 LLEHMVSKGYCLSTSFTICLDASFREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLCR 542
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
V +A EM + GI + TYN++ I L + G + EA+
Sbjct: 543 LDYVNEAYQAFAEMTARGIVPNNFTYNSI-----------------ISALCRAGNMTEAL 585
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K+ + + V I T N LIDGLC+ G+L++ ++ + N GLTPD VTYN +I+
Sbjct: 586 KLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSN-GLTPDTVTYNTIINA 644
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+C+ A + M G EP+
Sbjct: 645 YCRAKDMNSAMNFMNKMLAAGCEPD 669
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 141/329 (42%), Gaps = 64/329 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKL----------NVFCCDPNVITFNTLALVA 68
P+ TFN LI GLC +GR+ EA L + + C D + N A+ A
Sbjct: 457 LAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLSTSFTICLDASFREGN--AVCA 514
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L +++M + G+ +PD + + I+GLC+ + M +G+ P+ T N +
Sbjct: 515 LKCWDDM-GKLGL--QPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSI 571
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
L + G M EA L + M Q + P+ T N L+DG K G
Sbjct: 572 ISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGL 631
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D +YN +IN YC+ +++ A++ +ML+ G D TYN
Sbjct: 632 TPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYN----------------- 674
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK--IGRLKI-AWDIFHML 281
++ L N + +A KV + C T N L+DG+C + R I + M
Sbjct: 675 IWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAMILTGRLIKMA 734
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
Q P+ +T N+ + FCK+G ++A
Sbjct: 735 FQ-----PNTITLNVFLSHFCKQGFGKRA 758
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 29/231 (12%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN T+NS+I LC G + EA +L + + P++ T N L L E + N
Sbjct: 563 PNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNL 622
Query: 79 FGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
+C PD VT II+ C+ M+ G PD+ T N+ +L
Sbjct: 623 LLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCS 682
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYSY 171
+ + +A +L+ ++ P++ TYNTLMDG + + +
Sbjct: 683 NHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAMILTGRLIKMAFQPNTITL 742
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
N+ ++ +CK + A+ ++ + D T N + A + D H
Sbjct: 743 NVFLSHFCKQGFGKRALMWAEKLREDSFVFDDATRNIIDWARRELEDDPHA 793
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 162/363 (44%), Gaps = 60/363 (16%)
Query: 11 LGRI-----LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
LGR+ ++S P ++N++I LC E R+ E + + PNVIT+ T+
Sbjct: 217 LGRVDEATEVLSAAPPVAASYNAVILALCREFRMQEVFAVVGDMVGRGLQPNVITYTTIV 276
Query: 66 ---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------Q 106
+A + MV C P+V T T ++ GL DG + D +
Sbjct: 277 NAFCKAGELRMACAILARMVITG---CTPNVATFTALVGGLFNDGRVHDALDMWKCMVAE 333
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P V+ NV+ L G ++ A+ +L M Q PN TY+TL+DGF
Sbjct: 334 GWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGA 393
Query: 158 -AWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+ W+ GC+ +V Y ++ +CK A SL +ML E + T+NTL +
Sbjct: 394 ISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRS 453
Query: 213 INN------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ N PP+ Y + GL++ G +A+++ + NH L+
Sbjct: 454 LCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELS 513
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T N ++ GLC++ R+ F M G+ PD T+ +IH +CKEG+ + A +L
Sbjct: 514 LVTYNTVVSGLCQM-RMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWIL 572
Query: 315 LDM 317
M
Sbjct: 573 GAM 575
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 150/354 (42%), Gaps = 56/354 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ VT+ +++ LCT GR+ EA + P ++N + L F M F
Sbjct: 202 PDDVTYGTIVSALCTLGRVDEATEVLSA-----APPVAASYNAVILALCREFR-MQEVFA 255
Query: 81 VI-------CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
V+ +P+V+T T I++ CK G M+ G P+V T + L
Sbjct: 256 VVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLF 315
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
DG++ +A + + M+ P+T +YN L+ G GC +
Sbjct: 316 NDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNAR 375
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+Y+ LI+G+ K +++ A+S+ +M G + + Y + M
Sbjct: 376 TYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKM 435
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ N PP++ + T I L V A+ VF + H C T N L+ GL + G
Sbjct: 436 LVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNC 495
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + + MQN G+ +VTYN ++ G C+ ++A + M G++P+
Sbjct: 496 GDALQMV-IEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPD 548
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 51/341 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
+L R++++ TPN+ TF +L+ GL +GR+ +A ++K + P+ +++N L +
Sbjct: 290 AILARMVITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVL-IRG 348
Query: 69 LNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
L ++ V+ C P+ T + +IDG K G M G +P+
Sbjct: 349 LCSVGDLKGASSVLNDMEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPN 408
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
VV M K +A L++ M+ + PNT T+NTL+
Sbjct: 409 VVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFH 468
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
GC + +YN L++G ++ N DA+ + EM + GI TYNT+
Sbjct: 469 EMRRHGCPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLCQMR 528
Query: 211 -----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
M + + PD+ +T I K G V A + A+ C I
Sbjct: 529 MGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNILVYT 588
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
L+ LC +L+ A ++ + M G+ P+ VT+N+++ G
Sbjct: 589 ILMAELCNQDKLEDAM-VYLLKMLYEGIYPNTVTWNVLVRG 628
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 149/379 (39%), Gaps = 85/379 (22%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEMV 76
+N LI L E + A + + PNV T+N L A + +EM
Sbjct: 137 YNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMA 196
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLNVMTDNLSKDGKMEEA 131
+ C PD VT I+ LC G + + P + N + L ++ +M+E
Sbjct: 197 TKG---CPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQEV 253
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILING 177
++ M+ R + PN TY T+++ F + GC +V ++ L+ G
Sbjct: 254 FAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGG 313
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------------------PD 219
D V DA+ + + M++EG +YN L + +V P+
Sbjct: 314 LFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPN 373
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC---------------------------- 251
+ Y+T IDG K G + A+ +++ + C
Sbjct: 374 ARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLID 433
Query: 252 VLTIETC-------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ +E C N LI LC R+ A +FH M+ G P+ TYN ++HG +E
Sbjct: 434 KMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHE-MRRHGCPPNGRTYNELLHGLFRE 492
Query: 305 GQHQKANGLLLDMEETGLE 323
G A ++++M+ G+E
Sbjct: 493 GNCGDALQMVIEMQNHGIE 511
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 140/330 (42%), Gaps = 53/330 (16%)
Query: 34 CTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTN- 92
CTEG ++ A F + P+ AL F V++ G +P N
Sbjct: 94 CTEGALVAAVGAFARAGA----PDR---------ALKTFYRAVHDLGC-ARPTAPRLYNH 139
Query: 93 IIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
+ID L ++ G M G++P+V T N++ L ++ ++ A +L+ M +
Sbjct: 140 LIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKG 199
Query: 143 VNPNTCTYNTLMDGFAWWSK---------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
P+ TY T++ + SYN +I C++ +++ ++ +
Sbjct: 200 CPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQEVFAVVGD 259
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
M+ G++ + TY T+ M I P+ +T + GL+ +G
Sbjct: 260 MVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGR 319
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V +A+ ++ + + + N LI GLC +G LK A + + + Q+ G P+ TY+
Sbjct: 320 VHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQH-GCFPNARTYS 378
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I GF K G A + DM +G +PN
Sbjct: 379 TLIDGFSKAGDLDGAISIWNDMTRSGCKPN 408
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V + +++ C + +A L K+ V C PN +TFNTL AL +
Sbjct: 407 PNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGV 466
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM C P+ T ++ GL ++G M + G+ +VT N +
Sbjct: 467 FHEMRRHG---CPPNGRTYNELLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSG 523
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSKG------CRHD 167
L + EA + MI R + P+ T+ ++ + A W G C +
Sbjct: 524 LCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRN 583
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ Y IL+ C +EDA+ +ML EGI + T+N L +
Sbjct: 584 ILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTWNVLVRGV 629
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 161/375 (42%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G+ LL + L + P T+N LI G C + + + P + T+
Sbjct: 242 GQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTY 301
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L A +F ++ + PD V T +I GLC+ G
Sbjct: 302 QEIINGLCKNEECLEAYRVFNDLKDRGYA---PDRVMYTTMIHGLCEMGSFGEARKLWFE 358
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-------- 154
MMD+GM+P+ T N M K G E A L M + T T N ++
Sbjct: 359 MMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGK 418
Query: 155 --DGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ F + K G + D +YN LI G+CK+ V++ ++L E++++ + + Y
Sbjct: 419 SDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYEL 478
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M+ + P+++ Y T + G K+G ++++ N
Sbjct: 479 LIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKG 538
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T TCN +I LC G+ A ++F M G+ D +TYN +I GFCKEG+ K+
Sbjct: 539 YGTTTATCNKIISELCSRGKSDEASEMFKK-MSETGIKADAITYNSLIRGFCKEGKVGKS 597
Query: 311 NGLLLDMEETGLEPN 325
LL ++ GL+P+
Sbjct: 598 MNLLNELVAQGLQPS 612
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 149/359 (41%), Gaps = 57/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN-------- 70
+ P+ V + ++I GLC G EA +L+ ++ PN T+NT+ +L
Sbjct: 329 YAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERAC 388
Query: 71 -LFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+ EM N+ +G VTC II LC G M + G++ D +T N +
Sbjct: 389 ELYNEMCNKGYGTT----TVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSL 444
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DG---------FAWWSKGC 164
K+GK++E LL ++ +D P+ Y L+ DG SKG
Sbjct: 445 IRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGL 504
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
+ Y+Y+ +++G K + E L E ++G T N +
Sbjct: 505 HPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASE 564
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M+ + D+ Y + I G K G V ++M + + + + + LI LC
Sbjct: 565 MFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLC 624
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G + A ++ ++ + G+ P +I G CK+G+ + L+ M E ++P
Sbjct: 625 QNGDAESAKRLWGDMV-SKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKPK 682
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 136/351 (38%), Gaps = 74/351 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ + +K LC G I EA ++ +L E
Sbjct: 152 FIPDSASLEQYVKCLCGVGFIEEAIEVYFQL---------------------------KE 184
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV--MTDNLSKDG 126
G+ + +V C +I+ G K G M+ G D T V + G
Sbjct: 185 AGI--RISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSG 242
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++ LL ++ ++P TYN L+ GF ++ +Y+Y
Sbjct: 243 QVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTYQ 302
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------N 214
+ING CK+ +A + ++ G D Y T+ +
Sbjct: 303 EIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDK 362
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+ P+++ Y T + G K+G A ++++ + N T TCN +I LC G+ A
Sbjct: 363 GMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEA 422
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++F M G+ D +TYN +I GFCKEG+ + LL ++ +P+
Sbjct: 423 FEVFKK-MSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPS 472
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 65/273 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILE-------------------- 41
G++ F + ++ + + +T+NSLI+G C EG++ E
Sbjct: 417 GKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLY 476
Query: 42 ---------------AARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNEFGVICK 84
A RL ++ PN T++T+ +L FE + + C
Sbjct: 477 ELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCN 536
Query: 85 P----DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
TC II LC G M + G++ D +T N + K+GK+ +
Sbjct: 537 KGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGK 596
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWSKGCRHDVYSYNI---------LIN 176
+ LL ++ + + P+ +Y +L+ +G A +K D+ S I LI+
Sbjct: 597 SMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLIS 656
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G CK + + ML I+ + L
Sbjct: 657 GLCKQGRATEGMDRLMGMLENKIKPKKAAFEDL 689
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 55/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----------ALNLFEE 74
F++LI G EA ++F+ + V PN++T+N + + +FEE
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
M+ GV +PD +T +++ + G M+D+G+ DV T N + D + K
Sbjct: 284 MLRN-GV--QPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G+M+ A ++ M + + PN TY+T+ DG+A + G D S
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN L++ Y K EDA+ +C+EM S G++ D TYN L +DG
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNAL-----------------LDGY 443
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G E +VF + + + T + LID K + A ++F Q GL D
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ-AGLKAD 502
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV Y+ +I+ CK G A LL +M + G+ PN
Sbjct: 503 VVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPN 537
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 67/266 (25%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTLALV----- 67
+L + P+ +T+NSL+ +C+ G + EAAR LF ++ D +V T+NTL
Sbjct: 284 MLRNGVQPDRITYNSLL-AVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGG 342
Query: 68 ALNL-FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------------------- 105
++L +E M+ G P+VVT + + DG K G + D
Sbjct: 343 QMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYN 402
Query: 106 ------------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
G++ DVVT N + D K GK E + + M +
Sbjct: 403 TLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKD 462
Query: 142 DVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDA 187
V PN TY+TL+D ++ S G + DV Y+ LIN CK+ V+ A
Sbjct: 463 RVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSA 522
Query: 188 VSLCREMLSEGIRADATTYNTLFMAI 213
V L EM EGIR + TYN++ A
Sbjct: 523 VLLLDEMTKEGIRPNVVTYNSIIDAF 548
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----GFAW 159
+ +G V + + K G +EA + E M + PN TYN ++D G
Sbjct: 214 LSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVE 273
Query: 160 WSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ + G + D +YN L+ + E A +L EM+ GI D TYNT
Sbjct: 274 FKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNT 333
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ + P+ Y+T DG K G + +A+ +++ +
Sbjct: 334 LLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLG 393
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + N L+ K+GR + A + M + G+ DVVTYN ++ G+ K+G+ +
Sbjct: 394 IGLDRVSYNTLLSIYAKLGRFEDALKVCKE-MGSSGVKKDVVTYNALLDGYGKQGKFNEV 452
Query: 311 NGLLLDMEETGLEPN 325
+ +M++ + PN
Sbjct: 453 TRVFKEMKKDRVFPN 467
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + S ++VT+N+L+ G +G+ E R+FK++ PN++T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470
Query: 61 FNTLALVAL--NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MM 104
++TL V +L+EE + F K DVV + +I+ LCK+G M
Sbjct: 471 YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMT 530
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKME 129
+G+RP+VVT N + D + E
Sbjct: 531 KEGIRPNVVTYNSIIDAFGRSTTAE 555
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 161/359 (44%), Gaps = 62/359 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAA------RLFKKLNVFCCDPNVITFNTLALV--ALNLF 72
PN VT+N +I GL +G + EAA RL KK + F +P + V +L
Sbjct: 1154 PNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQ 1213
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM NE G++ P VVT +I GL + G M G+ PDV+T N + +
Sbjct: 1214 LEMENE-GIM--PTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGY 1270
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
K G ++EA L + + + P TYN L+DG+ +GC +V
Sbjct: 1271 CKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNV 1330
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA---------------- 212
+Y IL+ G R++ A EMLS+G++ D YNT A
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390
Query: 213 --INNVPPDSHVYTTYIDGLYKNGFVLEA----MKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ + D+ Y I GL K G + +A MK+ S C+ T CLI C
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCI----TYTCLIHAHC 1446
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G L+ A IF+ ++ + GL P VT+ ++IH +C+ G A G M E G+EPN
Sbjct: 1447 ERGLLREARKIFNNMISD-GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPN 1504
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 141/339 (41%), Gaps = 54/339 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +L G + + P ++T+N LI G C G + EA L +++ C PNV T+
Sbjct: 1274 GNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTY 1333
Query: 62 NTLALVALNL---------FEEMVNEFGVICKPDVVT-----CTNIIDGLCKDGF----- 102
L +LN+ F+EM+++ G+ +PD C +I G F
Sbjct: 1334 TILMKGSLNVRSLAMAREFFDEMLSK-GL--QPDCFAYNTRICAELILGDIARAFELREV 1390
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
+M +G+ D VT N++ L K G +++A L M+ + P+ TY L+
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGL 1450
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G ++ ++I+ YC+ N+ A R+ML EG+ + TYN
Sbjct: 1451 LREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 1510
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I L + G A F + V T LIDG CK+
Sbjct: 1511 L-----------------IHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKV 1553
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
G + A + + QN G+ PD +T+ ++ GF H
Sbjct: 1554 GNWEDAMRFYFEMHQN-GIHPDYLTHKALLKGFDGHVHH 1591
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 40/266 (15%)
Query: 97 LCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
LC F M G+ PDV N + L + ++ + E M++ + P+ TYNTL+
Sbjct: 1067 LCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLL 1126
Query: 155 DGFAWWSK----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREM-LSE 197
D F + GC + +YN++I G + ++E+A L M LS+
Sbjct: 1127 DSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK 1186
Query: 198 GIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+A + TYN L M + P Y I GL ++G V A
Sbjct: 1187 --KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAA 1244
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
F+ + + + T N L++G CK G LK A +F L + GL P V+TYNI+I
Sbjct: 1245 QVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL-RRAGLAPTVLTYNILID 1303
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G+C+ G ++A L +M E G PN
Sbjct: 1304 GYCRLGDLEEARILKEEMGEQGCLPN 1329
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 50/251 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + F L +++ + + VT+N LI GLC G + +A L K+ P+ IT
Sbjct: 1378 LGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCIT 1437
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A +F M+++ G++ P VT T II C+ G
Sbjct: 1438 YTCLIHAHCERGLLREARKIFNNMISD-GLL--PSAVTFTVIIHAYCRRGNLYSAYGWFR 1494
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+++G+ P+ +T NV+ L + G+ + A+ M++R + N
Sbjct: 1495 KMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANK-------------- 1540
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
Y+Y +LI+G CK N EDA+ EM GI D T+ L D H
Sbjct: 1541 -------YTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF-----DGH 1588
Query: 222 VYTT--YIDGL 230
V+ T Y+D +
Sbjct: 1589 VHHTIEYLDNV 1599
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 62/316 (19%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL---------NLFEEMV 76
FNSLI+ G E+ +LF+ + P+V+TFN+L + L +LF+EM
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKD 125
+GV PD T +I+G CK+ M+D+ R PDVVT N + D L +
Sbjct: 201 RTYGVT--PDSYTFNTLINGFCKNS-MVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRA 257
Query: 126 GKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
GK++ A+ +L M+++ DV+PN V SY L+ GYC +
Sbjct: 258 GKVKIAHNVLSGMLKKATDVHPN---------------------VVSYTTLVRGYCMKQE 296
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+++AV + +MLS G++ +A TYNTL ++ ++H Y D ++ F
Sbjct: 297 IDEAVLVFHDMLSRGLKPNAVTYNTLIKGLS----EAHRYDEIKD------ILIGGNDAF 346
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ C T N LI C G L A +F ++ N L PD +Y+++I C
Sbjct: 347 TTFAPDAC-----TFNILIKAHCDAGHLDAAMKVFQEML-NMKLHPDSASYSVLIRTLCM 400
Query: 304 EGQHQKANGLLLDMEE 319
+ +A L ++ E
Sbjct: 401 RNEFDRAETLFNELFE 416
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 160/372 (43%), Gaps = 76/372 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLALVALNLF--EEMV 76
+P+++TFNSL+ L GR A LF ++ + P+ TFNTL +N F MV
Sbjct: 170 SPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTL----INGFCKNSMV 225
Query: 77 NEFGVI--------CKPDVVTCTNIIDGLCKDGF----------MMDQG--MRPDVVTLN 116
+E I C PDVVT IIDGLC+ G M+ + + P+VV+
Sbjct: 226 DEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYT 285
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY------- 169
+ +++EA + M+ R + PN TYNTL+ G S+ R+D
Sbjct: 286 TLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGL---SEAHRYDEIKDILIGG 342
Query: 170 ------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
++NILI +C +++ A+ + +EML+ + D+ +Y+ L +
Sbjct: 343 NDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRN 402
Query: 214 ---------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ P + Y + L NG +A KVF + + V
Sbjct: 403 EFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMK-RGV 461
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ LI G C+ G+ K A+++ +LM PD+ TY ++I G K G+ A+
Sbjct: 462 QDPPSYKTLITGHCREGKFKPAYELL-VLMLRREFVPDLETYELLIDGLLKIGEALLAHD 520
Query: 313 LLLDMEETGLEP 324
L M + P
Sbjct: 521 TLQRMLRSSYLP 532
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 161 SKGC--RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
S GC D Y +N LI Y +++V L + M GI T+N+L
Sbjct: 130 SNGCVKLQDRY-FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGR 188
Query: 211 --MAIN---------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
MA + V PDS+ + T I+G KN V EA ++F + + C + T N
Sbjct: 189 TGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYN 248
Query: 260 CLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+IDGLC+ G++KIA ++ ML + + P+VV+Y ++ G+C + + +A + DM
Sbjct: 249 TIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDML 308
Query: 319 ETGLEPN 325
GL+PN
Sbjct: 309 SRGLKPN 315
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 40/249 (16%)
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFAW------- 159
N + + G +E+ L + M Q ++P+ T+N+L+ G A
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------- 208
+ G D Y++N LING+CK+ V++A + ++M D TYNT
Sbjct: 201 RTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKV 260
Query: 209 ---------LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
+ +V P+ YTT + G + EA+ VF + + T N
Sbjct: 261 KIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYN 320
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLT---PDVVTYNIMIHGFCKEGQHQKANGLLLD 316
LI GL + R DI ++ N T PD T+NI+I C G A + +
Sbjct: 321 TLIKGLSEAHRYDEIKDI--LIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQE 378
Query: 317 MEETGLEPN 325
M L P+
Sbjct: 379 MLNMKLHPD 387
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 133/320 (41%), Gaps = 55/320 (17%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
+ F P+ TFN LIK C G + A ++F+++ P+ +++ L
Sbjct: 347 TTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDR 406
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A LF E+ + ++ CKP + + LC +G +M +G++ D
Sbjct: 407 AETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPP 465
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-CRHDVY--- 169
+ + ++GK + A LL +M++R+ P+ TY L+DG + HD
Sbjct: 466 SYKTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLIDGLLKIGEALLAHDTLQRM 525
Query: 170 ----------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+++ ++ K + ++ L ML + IR + + + +
Sbjct: 526 LRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQK 585
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVF-------SAIGNHKCVL---------TIETCNCLID 263
+ + LY NG++++ ++ + H VL I+TCN +I+
Sbjct: 586 EKAFLI-VRLLYDNGYLVKMEELLGYLCENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIE 644
Query: 264 GLCKIGRLKIAWDIFHMLMQ 283
GLCK R A+ +++ L++
Sbjct: 645 GLCKHKRHSEAFSLYNELVE 664
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 52/357 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +VL + + + TFN ++ LC EG++ +A + PNV++
Sbjct: 205 LNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVS 264
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NT+ G + ++ I+D M +G+ PD T +
Sbjct: 265 YNTII-------------HGYSSRGNIEGARRILDA------MRVKGIEPDSYTYGSLIS 305
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
+ K+G++EEA+ L + M++ + PN TYNTL+DG+ KG
Sbjct: 306 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP 365
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
V +YN+L++ + + +A + +EM +GI DA TYN L
Sbjct: 366 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 425
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + P YT+ I L + + EA +F I + + N ++DG C
Sbjct: 426 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN 485
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A+ + M + PD VT+N ++ G C+EG+ ++A LL +M+ G++P+
Sbjct: 486 GNVERAFMLLKE-MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 541
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 136/299 (45%), Gaps = 61/299 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N L+ L EGR+ EA + K++ P+ IT+N L A A +L
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 424
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
EM+++ G+ +P VT T++I L + M +DQG+ PDV+ N M D
Sbjct: 425 HNEMLSK-GI--EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDG 481
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+G +E A LL+ M ++ V P+ T+NTLM G C++
Sbjct: 482 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM---------------------QGRCRE 520
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
VE+A L EM GI+ D +YNTL I G + G + +A +
Sbjct: 521 GKVEEARMLLDEMKRRGIKPDHISYNTL-----------------ISGYGRRGDIKDAFR 563
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
V + + T+ T N LI LCK +A ++ M N G++PD TY +I G
Sbjct: 564 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE-MVNKGISPDDSTYLSLIEG 621
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 36/229 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ +T+N LI G G +A L ++ +P +T+ +L V A +L
Sbjct: 400 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 459
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMM-----DQGMRPDVVTLNVMTDN 121
FE+++++ GV PDV+ ++DG C +G FM+ + + PD VT N +
Sbjct: 460 FEKILDQ-GV--SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
++GK+EEA LL+ M +R + P+ +YNTL+ G+ S G
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 576
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ +YN LI CK++ + A L +EM+++GI D +TY +L + NV
Sbjct: 577 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 625
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 67/271 (24%)
Query: 103 MMDQGMRPD-----------------------------------VVTLNVMTDNLSKDGK 127
M ++G+ P V T N+M + L K+GK
Sbjct: 183 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 242
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+++A + M PN +YNT++ G+ A KG D Y+Y
Sbjct: 243 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 302
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI+G CK+ +E+A L +M+ G+ +A TYNTL IDG
Sbjct: 303 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL-----------------IDGYCNK 345
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A + + ++ T N L+ L GR+ A D+ M+ G+ PD +T
Sbjct: 346 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE-MRKKGIIPDAIT 404
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YNI+I+G+ + G +KA L +M G+EP
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA K F + V IETCN ++ K+ R+++AW + + M ++ V T+NIM
Sbjct: 175 EAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAW-VLYAEMFRLRISSTVYTFNIM 233
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ CKEG+ +KA + ME G +PN
Sbjct: 234 VNVLCKEGKLKKAREFIGFMEGLGFKPN 261
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 48/352 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + + L L+ F ++ T N ++ +C EG + A + K+ C PNVIT
Sbjct: 203 IGESKHVWFFLKEGLVRKFPLDVTTCNIVLNSMCIEGNLKGAKHMIHKMKS-CSLPNVIT 261
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NT+ L+ + V +C M G+ DV T N+M D
Sbjct: 262 YNTI----LHWY---------------VKKGRFKAAMCVLEDMEKNGVEADVYTYNIMID 302
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
L K + A LL+ M ++ P+ CTYNTL+ GF SK G +
Sbjct: 303 KLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKP 362
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------FMAINNV-- 216
+ +Y LI+GYC++ +++A+ + EM G++ TY+ + F +N+
Sbjct: 363 SLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNGSVHEAFSVYDNMEK 422
Query: 217 ---PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PD + Y + GL K G +++A + S I + + +T N L+ G+C G L
Sbjct: 423 YGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDE 482
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D+ M PD+ TY I++ GFC++G+ A LL M E GL P+
Sbjct: 483 ALDLCEK-MVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPD 533
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 153/357 (42%), Gaps = 49/357 (13%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------A 65
+ SC PN++T+N+++ +GR A + + + + +V T+N + +
Sbjct: 251 MKSCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRS 310
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTL 115
A L + M G PD T +I G + MM QG++P + T
Sbjct: 311 THAYLLLKRMR---GDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATY 367
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-----FAWWSK----GCRH 166
+ D ++G ++EA +L M V P+ TY+ +++G F+ + GC
Sbjct: 368 TTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNGSVHEAFSVYDNMEKYGCSP 427
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
DVY+Y L+ G CK ++ A ++ D T N L + I
Sbjct: 428 DVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLC 487
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
N PD H YT + G + G ++ A+ + + V I T CL+ GL K
Sbjct: 488 EKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKE 547
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++K A +F ++ G+ D + YN M++G+ K G+ K + DM + + PN
Sbjct: 548 GQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPN 604
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 170/381 (44%), Gaps = 66/381 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD---PNV 58
G+ +LL +L P++VT+ L+KGL EG++ A+ LF++ + C + +
Sbjct: 513 GKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQE--IICKEGMYADC 570
Query: 59 ITFNT----------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------ 102
I +N+ L V + +++ N+ P+ + ++ G K G
Sbjct: 571 IAYNSMMNGYLKAGKLHKVEMTIYDMNQNKV----YPNPASYNILMHGHIKKGHLSRSIY 626
Query: 103 ----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M+ +G++P VT ++ LSK G +E A L+ M+ + P+ +++ L++ F+
Sbjct: 627 LYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFS 686
Query: 159 WWSK--------GCRHDVY------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
S+ C +Y +Y+ +ING + ++ + + R+M+ G+ T
Sbjct: 687 EKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHT 746
Query: 205 TYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
Y L M + P ++ + GL K G V E + VF +I
Sbjct: 747 HYIALINAKCRFGDINGAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIVFCSI 806
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM--LMQNPGLTPDVVTYNIMIHGFCKE 304
V TI T L+ GLCK ++ D H+ LM++ GL DVVTYN++I G CK
Sbjct: 807 IRAGMVPTIATFTTLMHGLCKEAKIS---DALHLKSLMESCGLKIDVVTYNVLITGLCKI 863
Query: 305 GQHQKANGLLLDMEETGLEPN 325
A L +M+ GL PN
Sbjct: 864 QCVSDALELYEEMKSKGLRPN 884
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L ++++ P+ ++F+ LI + R+ +A +LF + P+ T++ + L+
Sbjct: 662 FLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLI 721
Query: 68 ALNLFEEMVN------EFGVICKPDVVTCTNIIDGLCKDG-----FMMDQ-----GMRPD 111
N + + E G+ +P +I+ C+ G F + + G+ P
Sbjct: 722 RKNWLQHSCDVLRDMVESGL--EPKHTHYIALINAKCRFGDINGAFRLKEEMTALGIVPA 779
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------- 162
V + + LSK GK+EE + +I+ + P T+ TLM G +K
Sbjct: 780 EVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDALHLKS 839
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G + DV +YN+LI G CK + V DA+ L EM S+G+R + TTY TL AI
Sbjct: 840 LMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAI 895
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C + +++L+N Y K++ V DA M + G +A A N + A+ + HV+
Sbjct: 151 CDSNPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVW 210
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+GL + K L + TCN +++ +C G LK A + H M+
Sbjct: 211 FFLKEGLVR-----------------KFPLDVTTCNIVLNSMCIEGNLKGAKHMIHK-MK 252
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L P+V+TYN ++H + K+G+ + A +L DME+ G+E +
Sbjct: 253 SCSL-PNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEAD 293
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 55/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----------ALNLFEE 74
F++LI G EA ++F+ + V PN++T+N + + +FEE
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
M+ GV +PD +T +++ + G M+D+G+ DV T N + D + K
Sbjct: 284 MLRN-GV--QPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G+M+ A ++ M + + PN TY+T+ DG+A + G D S
Sbjct: 341 GGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN L++ Y K EDA+ +C+EM S G++ D TYN L +DG
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNAL-----------------LDGY 443
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G E +VF + + + T + LID K + A ++F Q GL D
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ-AGLKAD 502
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV Y+ +I+ CK G A LL +M + G+ PN
Sbjct: 503 VVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPN 537
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 67/266 (25%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTLALV----- 67
+L + P+ +T+NSL+ +C+ G + EAAR LF ++ D +V T+NTL
Sbjct: 284 MLRNGVQPDRITYNSLL-AVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGG 342
Query: 68 ALNL-FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD--------------------- 105
++L +E M+ G P+VVT + + DG K G + D
Sbjct: 343 QMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYN 402
Query: 106 ------------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
G++ DVVT N + D K GK E + + M +
Sbjct: 403 TLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKD 462
Query: 142 DVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDA 187
V PN TY+TL+D ++ S G + DV Y+ LIN CK+ V+ A
Sbjct: 463 RVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSA 522
Query: 188 VSLCREMLSEGIRADATTYNTLFMAI 213
V L EM EGIR + TYN++ A
Sbjct: 523 VLLLDEMTKEGIRPNVVTYNSIIDAF 548
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----GFAW 159
+ +G V + + K G +EA + E M + PN TYN ++D G
Sbjct: 214 LSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVE 273
Query: 160 WSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ + G + D +YN L+ + E A +L EM+ GI D TYNT
Sbjct: 274 FKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNT 333
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ + P+ Y+T DG K G + +A+ +++ +
Sbjct: 334 LLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLG 393
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + N L+ K+GR + A + M + G+ DVVTYN ++ G+ K+G+ +
Sbjct: 394 IGLDRVSYNTLLSIYAKLGRFEDALKVCKE-MGSSGVKKDVVTYNALLDGYGKQGKFNEV 452
Query: 311 NGLLLDMEETGLEPN 325
+ +M++ + PN
Sbjct: 453 TRVFKEMKKDRVFPN 467
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + S ++VT+N+L+ G +G+ E R+FK++ PN++T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470
Query: 61 FNTLALVAL--NLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MM 104
++TL V +L+EE + F K DVV + +I+ LCK+G M
Sbjct: 471 YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMT 530
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKME 129
+G+RP+VVT N + D + E
Sbjct: 531 KEGIRPNVVTYNSIIDAFGRSTTAE 555
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 155/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LL + N + S+I LC +G++ +A R+ + + + + + F
Sbjct: 301 GELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVF 360
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
T+ A LFEEM + G+ D VT T +I+GLC+ G
Sbjct: 361 TTVISGFCSKGDLAAARRLFEEM-QKRGLAA--DRVTHTALINGLCRAGELKEADRVLQE 417
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
M+D+G+ DVVT V+ D K G M EA + M+ R V PN TY L DG
Sbjct: 418 MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGD 477
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG +VY+YN LING CK N+E A+ + EM + G R D TY T
Sbjct: 478 VRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTT 537
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L ID L K+G A + + + +I T N L++G C
Sbjct: 538 L-----------------IDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMS 580
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR++ + +++ + P+VVTYN ++ +C + + + M + PN
Sbjct: 581 GRVEGGKKLLEWMLEK-NVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 31/249 (12%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE--- 74
PN+VT+ +L GLC +G + A L ++ + NV T+N+L L E+
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMR 518
Query: 75 -MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
M + DV T T +ID LCK G M+D+G++P + T NV+ +
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFC 578
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
G++E LLE M++++V PN TYN+LM + S+ +
Sbjct: 579 MSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNEN 638
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YNILI G+CK RN+++A+ +EM+ +G+R A++Y+ L +N S + D
Sbjct: 639 TYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEA-RVFFDK 697
Query: 230 LYKNGFVLE 238
+ G E
Sbjct: 698 MRNEGLTAE 706
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 148/337 (43%), Gaps = 57/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N+ + N L+K L + GR+ +A + F +++ P+V+T+ T+ A+ L
Sbjct: 254 NVCSHNILLKALLSAGRLKDACQHFDEMS---SPPDVVTYGTMVHGYCVRGELENAVKLL 310
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNL 122
+EM + G+ + + T++I LC G + D G+ D V +
Sbjct: 311 DEMAAK-GL--ESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGF 367
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
G + A L E M +R + + T+ L++G KG DV
Sbjct: 368 CSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDV 427
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+Y +LI+GYCK N+ +A + EM+ V P+ YT D
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGR-----------------RVAPNVVTYTALSD 470
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
GL K G V A ++ + N L + T N LI+GLCK G L+ A I M+ G
Sbjct: 471 GLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIM-TEMEAAGHR 529
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV TY +I CK G+ +A+ +L +M + G++P+
Sbjct: 530 TDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPS 566
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---G 163
G+ P + N + L ++EA L + + N C++N L+ +
Sbjct: 223 GLSPSPESCNAVLSRLP----LDEAIALFRELPDK----NVCSHNILLKALLSAGRLKDA 274
Query: 164 CRH--------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
C+H DV +Y +++GYC +E+AV L EM ++G+ ++AT Y ++
Sbjct: 275 CQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCN 334
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M ++ V D+ V+TT I G G + A ++F + T
Sbjct: 335 KGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVT 394
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LI+GLC+ G LK A + M + GL DVVTY ++I G+CK G +A + +M
Sbjct: 395 HTALINGLCRAGELKEADRVLQE-MVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM 453
Query: 318 EETGLEPN 325
+ PN
Sbjct: 454 VGRRVAPN 461
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR GG LL +L PN+VT+NSL+K C + + ++K ++ PN T+
Sbjct: 581 GRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTY 640
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N L CK N+ + L M+++G+R + + +
Sbjct: 641 NIL--------------IKGHCK-----ARNMKEALYFHQEMIEKGLRLTASSYSALIRL 681
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L+K K EA + M + Y+ MD S+N +
Sbjct: 682 LNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMD-------------ISFN--------E 720
Query: 182 RNVEDAVSLCREML-SEGIRADATT 205
N+E ++LC E++ + +++ A T
Sbjct: 721 DNLESTITLCDELVEASHVKSKAGT 745
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 143/323 (44%), Gaps = 51/323 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL------ALVAL 69
SC + +++ S+ +G C R+ EA +L + P+++ +N + A
Sbjct: 133 SCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVR 192
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------------MDQGMRPDVVTLNV 117
+E + + C P+ VT T +IDG CK G + D P+VVT N
Sbjct: 193 EAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNA 252
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ L K ++E A L++ M RD+ +T TY TLMDG + G
Sbjct: 253 LISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG 312
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C V +Y L++ +CK +++DA + R M+++GI PPD Y
Sbjct: 313 CNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGI-----------------PPDVTTY 355
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ++GL++NG V A + F I +C + L+ G CK + A +++ M
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVK-YYVEML 414
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQ 306
+ L PD T +++ CK G+
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRGR 437
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 148/358 (41%), Gaps = 88/358 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN-------TLALV--ALNL 71
PN+ N L+ LC G + +A +F+ + C P+VIT N L L+ AL L
Sbjct: 36 PNLRDINLLLASLCQAGTMDQAMAIFRGIQ---CSPSVITLNILINGFCELQLLDKALEL 92
Query: 72 FEEMVNEFGVI-------------------------------CKPDVVTCTNIIDGLCKD 100
F EM F ++ C DV+ T++ G CK
Sbjct: 93 FHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKA 152
Query: 101 G-------FMMD----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
++D + +PD+V NV+ K G++ EA +LE ++ PN T
Sbjct: 153 QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212
Query: 150 YNTLMDGF----------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y TL+DGF + +V ++N LI+G CK +E A L ++
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQ 272
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + +RAD TY TL +DGL K G E +VF + C
Sbjct: 273 MKARDLRADTFTYTTL-----------------MDGLCKQGRTSEVSRVFEEMLREGCNP 315
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
++ T L+ CK G L+ A + ++ G+ PDV TY +++ G + G+ + A
Sbjct: 316 SVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK-GIPPDVTTYTVLLEGLFENGKVRTAT 372
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVI 59
GR + +L ++ PN VT+ +LI G C G + EA +LFK L+ +PNV+
Sbjct: 189 GRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVV 248
Query: 60 TFNTL--ALVALNLFE---EMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------M 103
TFN L L + E E+V + + D T T ++DGLCK G M
Sbjct: 249 TFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEM 308
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ +G P VVT + K G +++A ++ M+ + + P+ TY L++G
Sbjct: 309 LREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV 368
Query: 158 ----AWWSKGCRHD----VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++ K R Y+ L+ G CK V++AV EML + D T L
Sbjct: 369 RTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLL 428
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------MDGFAWW 160
P+ T +V+ L K G++ EA M++R PN N L MD
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60
Query: 161 SKG--CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+G C V + NILING+C+ + ++ A+ L EM F + P
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN------------FALV----P 104
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
++ YT I K + +A ++ + C + + G CK R+ A+ +
Sbjct: 105 EATTYTAIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLL 162
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ PD+V +N++IHGFCK G+ ++A +L + G PN
Sbjct: 163 LDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPN 209
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + +L P++VT+ +L+ C G + +A ++ + + P+V T+
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A FE+++ E C P V + ++ G CK
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRER---CPPCAVVYSALVRGCCKAALVDEAVKYYVE 412
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKME 129
M+D+ + PD T ++ + L K G+ +
Sbjct: 413 MLDRRLAPDPATCKLLVEMLCKRGRTD 439
>gi|293333002|ref|NP_001168049.1| uncharacterized protein LOC100381779 [Zea mays]
gi|223945693|gb|ACN26930.1| unknown [Zea mays]
gi|414871082|tpg|DAA49639.1| TPA: hypothetical protein ZEAMMB73_603879 [Zea mays]
Length = 582
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 162/340 (47%), Gaps = 48/340 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
+++S P+ +T N LI LC EG++ A ++ + + C P+ ITFNTL + + +L
Sbjct: 184 MVLSGGVPDTITCNMLIGQLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHL 243
Query: 72 FEEMVN----EFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNV 117
++ V+ + + P +T T ++D +CK M +G +P VV+ N
Sbjct: 244 YDRAVSFWKEQLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNT 303
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY----NTLMDGFAWWSKG---------- 163
+ K G +++A +L + + PN TY ++L D W G
Sbjct: 304 LISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQAN 363
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ DV +YNI IN +C+ +++ A+ + M+SE D TYNTL AI+
Sbjct: 364 HKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAIS--------- 414
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
K G V EA+ +F +I + C + T N LID L K G + A +F ++
Sbjct: 415 --------KRGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIV 466
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ G+ PD VTY +I GFCK+ ++A LL M G E
Sbjct: 467 D-GINPDDVTYGSLIMGFCKKNMAKEALELLNQMLALGFE 505
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 130/335 (38%), Gaps = 81/335 (24%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A + +EMV V PD C +I GL + G M+ G PD +T N+
Sbjct: 142 ACRIIDEMVLHGQV---PDSKCCVRLIRGLVRTGNTNKARHVLEVMVLSGGVPDTITCNM 198
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWSK----- 162
+ L +G++ A +LE M +P+ T+NTL+ ++W +
Sbjct: 199 LIGQLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHLYDRAVSFWKEQLKIG 258
Query: 163 ----------------------------------GCRHDVYSYNILINGYCKDRNVEDAV 188
GC+ V SYN LI+ CK ++DA
Sbjct: 259 WPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLISASCKAGCLKDAK 318
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
+ + +EG+ + TTY L M N PD Y +I+
Sbjct: 319 LILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNIFINYF 378
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G + +A+ V + + KC I T N L++ + K G ++ A IFH + +N G
Sbjct: 379 CRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAISKRGMVQEALGIFHSIREN-GCQVV 437
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +I K G A L +M G+ P+
Sbjct: 438 RITYNTLIDALAKRGDIINAMTLFDEMIVDGINPD 472
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 48/267 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++N+LI C G + +A + +L+ +PN T+ L +L + E+ +
Sbjct: 296 PHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDL 355
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ KPDV I+ C+ G M+ + PD+VT N + + +SK
Sbjct: 356 LAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAISK 415
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G ++EA + + + TYNTL+D A G D +
Sbjct: 416 RGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIINAMTLFDEMIVDGINPDDVT 475
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y LI G+CK ++A+ L +ML+ G ATT++ + A+
Sbjct: 476 YGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQALCKGCKAEAAAEILRVMV 535
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEA 239
NV S Y + + + K+G + EA
Sbjct: 536 SRNVNHRSAFYLSIVTRVAKSGRLKEA 562
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 23/161 (14%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV------- 67
CF P++VT+N+L+ + G + EA +F + C IT+NTL AL
Sbjct: 398 KCF-PDIVTYNTLLNAISKRGMVQEALGIFHSIRENGCQVVRITYNTLIDALAKRGDIIN 456
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ LF+EM+ + G+ PD VT ++I G CK M+ G T ++
Sbjct: 457 AMTLFDEMIVD-GI--NPDDVTYGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSM 513
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
M L K K E A +L VM+ R+VN + Y +++ A
Sbjct: 514 MIQALCKGCKAEAAAEILRVMVSRNVNHRSAFYLSIVTRVA 554
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 143/323 (44%), Gaps = 51/323 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL------ALVAL 69
SC + +++ S+ +G C R+ EA +L + P+++ +N + A
Sbjct: 133 SCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVR 192
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------------MDQGMRPDVVTLNV 117
+E + + C P+ VT T +IDG CK G + D P+VVT N
Sbjct: 193 EAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNA 252
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ L K ++E A L++ M RD+ +T TY TLMDG + G
Sbjct: 253 LISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG 312
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C V +Y L++ +CK +++DA + R M+++GI PPD Y
Sbjct: 313 CNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGI-----------------PPDVTTY 355
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ++GL++NG V A + F I +C + L+ G CK + A +++ M
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVK-YYVEML 414
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQ 306
+ L PD T +++ CK G+
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRGR 437
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 149/358 (41%), Gaps = 88/358 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN-------TLALV--ALNL 71
PN+ N L+ LC G++ +A +F+ + C P+VIT N L L+ AL L
Sbjct: 36 PNLRDINLLLASLCQAGKMDQAMAIFRGIQ---CSPSVITLNILINGFCELQLLDKALEL 92
Query: 72 FEEMVNEFGVI-------------------------------CKPDVVTCTNIIDGLCKD 100
F EM F ++ C DV+ T++ G CK
Sbjct: 93 FHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKA 152
Query: 101 G-------FMMD----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
++D + +PD+V NV+ K G++ EA +LE ++ PN T
Sbjct: 153 QRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVT 212
Query: 150 YNTLMDGF----------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y TL+DGF + +V ++N LI+G CK +E A L ++
Sbjct: 213 YTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQ 272
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + +RAD TY TL +DGL K G E +VF + C
Sbjct: 273 MKARDLRADTFTYTTL-----------------MDGLCKQGRTSEVSRVFEEMLREGCNP 315
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
++ T L+ CK G L+ A + ++ G+ PDV TY +++ G + G+ + A
Sbjct: 316 SVVTYTTLVHAHCKAGSLQDAQQVIRSMVAK-GIPPDVTTYTVLLEGLFENGKVRTAT 372
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 32/240 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVI 59
GR + +L ++ PN VT+ +LI G C G + EA +LFK L+ +PNV+
Sbjct: 189 GRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVV 248
Query: 60 TFNTL--ALVALNLFE---EMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------M 103
TFN L L + E E+V + + D T T ++DGLCK G M
Sbjct: 249 TFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEM 308
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ +G P VVT + K G +++A ++ M+ + + P+ TY L++G
Sbjct: 309 LREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV 368
Query: 158 ----AWWSKGCRHD----VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++ K R Y+ L+ G CK V++AV EML + D T L
Sbjct: 369 RTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLL 428
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 29/227 (12%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P+ T +V+ L K G++ EA M++R PN N L+ K
Sbjct: 1 PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
C V + NILING+C+ + ++ A+ L EM F + P
Sbjct: 61 FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN------------FALV----P 104
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
++ YT I K + +A ++ + C + + G CK R+ A+ +
Sbjct: 105 EATTYTAIIKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLL 162
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ PD+V +N++IHGFCK G+ ++A +L + G PN
Sbjct: 163 LDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPN 209
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + +L P++VT+ +L+ C G + +A ++ + + P+V T+
Sbjct: 296 GRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
L A FE+++ E C P V + ++ G CK
Sbjct: 356 TVLLEGLFENGKVRTATEFFEKILRER---CPPCAVVYSALVRGCCKAALVDEAVKYYVE 412
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKME 129
M+D+ + PD T ++ + L K G+ +
Sbjct: 413 MLDRRLAPDPATCKLLVEMLCKRGRTD 439
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 151/357 (42%), Gaps = 58/357 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ T+ +I+GLC GR+ EA L + C P+V+T+ L A+
Sbjct: 173 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 232
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
+ +EM + C P++VT II+G+C++G + D G +PD V+ +
Sbjct: 233 VLDEMRAKG---CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 289
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + E+ L M++++ PN T++ L+ F GC
Sbjct: 290 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 349
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ NI+IN CK V+DA M S G D +Y T+
Sbjct: 350 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 409
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M N PP+ + T+I L + G + +A + + H C + I T N L++G C
Sbjct: 410 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 469
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++F+ + P+ +TY ++ G C + A LL +M + PN
Sbjct: 470 GRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPN 522
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 58/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L R+ F P+ V++ +++KGLC R + LF ++ C PN +TF
Sbjct: 260 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 319
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+ L A+ + E+M G C + C +I+ +CK G + D
Sbjct: 320 DMLVRFFCRGGMVERAIQVLEQMS---GHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 376
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGF 157
G PD ++ + L + + E+A LL+ M++++ PN T+NT + G
Sbjct: 377 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 436
Query: 158 AWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ GC ++ +YN L+NG+C V+ A+ L S + + TY T
Sbjct: 437 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL---FYSMPCKPNTITYTT 493
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + N P+ + + + G + EA+++ + H
Sbjct: 494 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + T N L+DG+ K + A ++ H L+ N G++PD+VTY+ +I +E + ++A
Sbjct: 554 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSN-GVSPDIVTYSSIIGVLSREDRVEEA 612
Query: 311 NGLLLDMEETGLEPN 325
+ +++ G+ P
Sbjct: 613 IKMFHIVQDLGMRPK 627
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 141/351 (40%), Gaps = 61/351 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ R P++ LI+ LC GR +AAR+ + +V +NTL
Sbjct: 96 LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYC 155
Query: 66 -LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
L+ ++ V PD T T II GLC G M+ +G +P VVT
Sbjct: 156 RYGQLDAARRLIASMPV--APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVT 213
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
V+ + + K +A +L+ M + PN + +YN++
Sbjct: 214 YTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPN---------------------IVTYNVI 252
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
ING C++ V+DA + S G + D +Y T+ M N
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ + + + G V A++V + H C CN +I+ +CK GR+ D
Sbjct: 313 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD---D 369
Query: 277 IFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F L M + G +PD ++Y ++ G C+ + + A LL +M PN
Sbjct: 370 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 53/352 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L + +P+ +++ +++KGLC R +A L K++ C PN +TF
Sbjct: 365 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 424
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM---- 108
NT + A L E+M +E G C+ ++VT +++G C G +D +
Sbjct: 425 NTFICILCQKGLIEQATMLIEQM-SEHG--CEVNIVTYNALVNGFCVQG-RVDSALELFY 480
Query: 109 ----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+P+ +T + L +++ A LL M+Q+D PN T+N L+ F
Sbjct: 481 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 540
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC ++ +YN L++G KD N E+A+ L ++S G+ D TY+++
Sbjct: 541 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSI- 599
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I L + V EA+K+F + + N ++ LCK
Sbjct: 600 ----------------IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 643
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A D F ++ N G P+ +TY +I G E ++ LL ++ G+
Sbjct: 644 TDGAIDFFAYMVSN-GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 694
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 52/357 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +VL + + + TFN ++ LC EG++ +A + PNV++
Sbjct: 227 LNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVS 286
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NT+ G + ++ I+D M +G+ PD T +
Sbjct: 287 YNTII-------------HGYSSRGNIEGARRILDA------MRVKGIEPDSYTYGSLIS 327
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
+ K+G++EEA+ L + M++ + PN TYNTL+DG+ KG
Sbjct: 328 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMP 387
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
V +YN+L++ + + +A + +EM +GI DA TYN L
Sbjct: 388 SVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLH 447
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + P YT+ I L + + EA +F I + + N ++DG C
Sbjct: 448 NEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCAN 507
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G ++ A+ + M + PD VT+N ++ G C+EG+ ++A LL +M+ G++P+
Sbjct: 508 GNVERAFMLLKE-MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPD 563
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 136/299 (45%), Gaps = 61/299 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N L+ L EGR+ EA + K++ P+ IT+N L A A +L
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
EM+++ G+ +P VT T++I L + M +DQG+ PDV+ N M D
Sbjct: 447 HNEMLSK-GI--EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDG 503
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+G +E A LL+ M ++ V P+ T+NTLM G C++
Sbjct: 504 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM---------------------QGRCRE 542
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
VE+A L EM GI+ D +YNTL I G + G + +A +
Sbjct: 543 GKVEEARMLLDEMKRRGIKPDHISYNTL-----------------ISGYGRRGDIKDAFR 585
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
V + + T+ T N LI LCK +A ++ M N G++PD TY +I G
Sbjct: 586 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE-MVNKGISPDDSTYLSLIEG 643
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 36/229 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ +T+N LI G G +A L ++ +P +T+ +L V A +L
Sbjct: 422 PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 481
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMM-----DQGMRPDVVTLNVMTDN 121
FE+++++ GV PDV+ ++DG C +G FM+ + + PD VT N +
Sbjct: 482 FEKILDQ-GV--SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
++GK+EEA LL+ M +R + P+ +YNTL+ G+ S G
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPT 598
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ +YN LI CK++ + A L +EM+++GI D +TY +L + NV
Sbjct: 599 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 647
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 113/271 (41%), Gaps = 67/271 (24%)
Query: 103 MMDQGMRPD-----------------------------------VVTLNVMTDNLSKDGK 127
M ++G+ P V T N+M + L K+GK
Sbjct: 205 MKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGK 264
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNI 173
+++A + M PN +YNT++ G+ A KG D Y+Y
Sbjct: 265 LKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGS 324
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
LI+G CK+ +E+A L +M+ G+ +A TYNTL IDG
Sbjct: 325 LISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL-----------------IDGYCNK 367
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A + + ++ T N L+ L GR+ A D+ M+ G+ PD +T
Sbjct: 368 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE-MRKKGIIPDAIT 426
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
YNI+I+G+ + G +KA L +M G+EP
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA K F + V IETCN ++ K+ R+++AW + + M ++ V T+NIM
Sbjct: 197 EAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAW-VLYAEMFRLRISSTVYTFNIM 255
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ CKEG+ +KA + ME G +PN
Sbjct: 256 VNVLCKEGKLKKAREFIGFMEGLGFKPN 283
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 54/358 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F LL + +++ ++LI+GLC +GRI EA FK + C PNVIT+
Sbjct: 13 GQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITY 71
Query: 62 NTLA---------LVALNLFEEMVNEFGVI--CKPDVVTCTNIIDGLCKD---------- 100
NT+ L LF++M + C+PDV++ + +ID LCK
Sbjct: 72 NTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYF 131
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M G P+VVT + + D L K +++EA LL + D+ P YN +++GF
Sbjct: 132 KRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQ 191
Query: 161 --------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
KG ++ +N +++ K+ E A +L G + + TY
Sbjct: 192 GKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTY 251
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
N + GL K G V EA ++ + K + T + +IDG C
Sbjct: 252 NVA-----------------VHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFC 294
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
K GR+ A D+F +M + + P VT+ ++HGF + + ++A + DM G P
Sbjct: 295 KAGRMDKADDVFTRMMVHECI-PHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP 351
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 158/361 (43%), Gaps = 58/361 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLN-----VFCCDPNVITFNTL--ALVALNLF 72
+PN++T+N+++ GLC RI E LF + C+P+VI+++T+ AL
Sbjct: 65 SPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRV 124
Query: 73 EEMVNEF----GVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVM 118
++ F V C P+VVT +++IDGLCK + + + + M P + N +
Sbjct: 125 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAV 184
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------------SK 162
+ + GK E LL M ++ N +N ++ A W
Sbjct: 185 VNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAML--HALWKNDEQEKACQFFERLLKS 242
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
G + +V +YN+ ++G CK V++A + EM+ + D TY+++
Sbjct: 243 GKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKA 302
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M ++ P + T + G ++ EA +V + N + ++T N L+D
Sbjct: 303 DDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDC 362
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+C ++ A +I+H M+ PD TY +I C+ + +A L ME + P
Sbjct: 363 VCGADSVESALEIYHK-MKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVP 421
Query: 325 N 325
N
Sbjct: 422 N 422
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 45/242 (18%)
Query: 91 TNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
T +I+G CK G M ++G++ DV+ + + L + G+++EA
Sbjct: 3 TTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA--------- 53
Query: 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
++ F + C +V +YN ++NG CK +++ + L +M
Sbjct: 54 -------------LEQFKSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDM------ 94
Query: 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+ A + PD Y+T ID L K V +A + F + C + T +
Sbjct: 95 ------EKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSS 148
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LIDGLCK+ R+ A+ + M ++ + P + YN +++GF ++G+ + LLL M+E
Sbjct: 149 LIDGLCKVDRVDEAYSLL-MQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEK 207
Query: 321 GL 322
G
Sbjct: 208 GF 209
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y +ING+CK V+ A L EM G++ D ++TL +
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-----GNHKCVLTIETCNCLIDGLCKI 268
P+ Y T ++GL K + E +++F + +H C + + + +ID LCK
Sbjct: 62 EECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKA 121
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+ A++ F M+ G P+VVTY+ +I G CK + +A LL+ ++ + P
Sbjct: 122 QRVDKAYEYFKR-MRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPR 177
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 42/311 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L ++ S TP+++T++S+I G C GR+ +A +F ++ V C P+ +TF
Sbjct: 262 GKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTF 321
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-KDGF--------- 102
TL + A + E+MVN G I P + T ++D +C D
Sbjct: 322 MTLLHGFSEHKKSREAFRVHEDMVNA-GFI--PGLQTYNVLMDCVCGADSVESALEIYHK 378
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + +PD T + L + +++EA L+VM +V PN + L++ +
Sbjct: 379 MKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVE--VLCKQ 436
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + S + CK ++AV + +M+ +G+R D TY + ++
Sbjct: 437 GEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLC-------- 488
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
GL + V A+ F + + C + T LI C A+ IF ++
Sbjct: 489 ------GLDR---VDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMV 539
Query: 283 QNPGLTPDVVT 293
G TP T
Sbjct: 540 A-AGFTPQAQT 549
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+YTT I+G K G V +A ++ + + + + LI GLC+ GR+ A + F +
Sbjct: 1 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET-----GLEPN 325
+ +P+V+TYN +++G CK + + L DME+ G EP+
Sbjct: 61 GEE--CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPD 107
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 26/211 (12%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F P + T+N L+ +C + A ++ K+ P+ T+ L L +E
Sbjct: 349 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAK 408
Query: 77 NEFGVICKPDVVT----CTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
V+ +VV C +++ LCK G +D+ V NV+ + K G+ +EA
Sbjct: 409 EFLDVMEADNVVPNGAICHALVEVLCKQG-EVDEACS---VLDNVV--EICKAGEPDEAV 462
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
++E M+ + V P+ TY ++ S+GC + +Y +LI
Sbjct: 463 EVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEA 522
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
C +DA + M++ G A T TL
Sbjct: 523 CSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 56/355 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L + + F+++I G EA ++F + + PN++T
Sbjct: 90 LGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVT 149
Query: 61 FNTLALV----------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
+N + L +F+EM+ +PD +T +++ K G
Sbjct: 150 YNAVIDACGKGGVEFKRVLEIFDEMLRNG---MQPDRITFNSLLAVCSKGGLWEAARSLS 206
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M+++G+ D+ T N + D + K G+++ A ++ M +++ PN TY+T++DG+A
Sbjct: 207 CEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKA 266
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ G D SYN L++ Y K E+A+ +CREM + GIR D TY
Sbjct: 267 GRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTY 326
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N L M +V P+ Y+T ID K G EAM VF
Sbjct: 327 NALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKK 386
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + LID LCK G ++ A + M G+ P+VVTYN +I F +
Sbjct: 387 AGLKADVVLYSALIDALCKNGLVESAVSLLDE-MTKEGIRPNVVTYNSIIDAFGR 440
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----GFAW 159
+ +G V + + + G EA + M + PN TYN ++D G
Sbjct: 104 LTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVE 163
Query: 160 WSK-----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ + G + D ++N L+ K E A SL EM++ GI D TYNT
Sbjct: 164 FKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNT 223
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L A+ N+ P+ Y+T IDG K G + +A +F+ +
Sbjct: 224 LLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLG 283
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + N L+ K+GR + A D+ M+N G+ DVVTYN ++ G+ K+ ++
Sbjct: 284 ISLDRVSYNTLLSIYAKLGRFEEAMDVCRE-MENSGIRKDVVTYNALLGGYGKQYKYDVV 342
Query: 311 NGLLLDMEETGLEPN 325
+ +M+ + PN
Sbjct: 343 RKVFEEMKARHVSPN 357
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV--------- 67
S ++VT+N+L+ G + + ++F+++ PN++T++TL V
Sbjct: 317 SGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYRE 376
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+++F E + G+ K DVV + +ID LCK+G M +G+RP+VVT N
Sbjct: 377 AMDVFREF-KKAGL--KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNS 433
Query: 118 MTDNLSKDGKME 129
+ D + E
Sbjct: 434 IIDAFGRPATTE 445
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 151/357 (42%), Gaps = 58/357 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ T+ +I+GLC GR+ EA L + C P+V+T+ L A+
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
+ +EM + C P++VT II+G+C++G + D G +PD V+ +
Sbjct: 202 VLDEMRAKG---CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 258
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + E+ L M++++ PN T++ L+ F GC
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 318
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ NI+IN CK V+DA M S G D +Y T+
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M N PP+ + T+I L + G + +A + + H C + I T N L++G C
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 438
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++F+ + P+ +TY ++ G C + A LL +M + PN
Sbjct: 439 GRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPN 491
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 163/375 (43%), Gaps = 58/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L R+ F P+ V++ +++KGLC R + LF ++ C PN +TF
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+ L A+ + E+M G C + C +I+ +CK G + D
Sbjct: 289 DMLVRFFCRGGMVERAIQVLEQMS---GHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGF 157
G PD ++ + L + + E+A LL+ M++++ PN T+NT + G
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405
Query: 158 AWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ GC ++ +YN L+NG+C V+ A+ L S + + TY T
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL---FYSMPCKPNTITYTT 462
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + N P+ + + + G + EA+++ + H
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + T N L+DG+ + A ++ H L+ N G++PD+VTY+ +I +E + ++A
Sbjct: 523 CTPNLITYNTLLDGITNDCNSEEALELLHGLVSN-GVSPDIVTYSSIIGVLSREDRVEEA 581
Query: 311 NGLLLDMEETGLEPN 325
+ +++ G+ P
Sbjct: 582 IKMFHIVQDLGMRPK 596
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 138/341 (40%), Gaps = 61/341 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEE 74
P++ LI+ LC GR +AAR+ + +V +NTL L+
Sbjct: 75 APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
++ V PD T T II GLC G M+ +G +P VVT V+ + + K
Sbjct: 135 LIASMPV--APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 192
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
+A +L+ M + PN + +YN++ING C++ V
Sbjct: 193 STGFGQAMEVLDEMRAKGCTPN---------------------IVTYNVIINGMCREGRV 231
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+DA + S G + D +Y T+ M N P+ +
Sbjct: 232 DDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQN 284
+ + G V A++V + H C CN +I+ +CK GR+ D F L M +
Sbjct: 292 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD---DAFQFLNNMGS 348
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD ++Y ++ G C+ + + A LL +M PN
Sbjct: 349 YGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 154/352 (43%), Gaps = 53/352 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L + +P+ +++ +++KGLC R +A L K++ C PN +TF
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 393
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM---- 108
NT + A L E+M +E G C+ ++VT +++G C G +D +
Sbjct: 394 NTFICILCQKGLIEQATMLIEQM-SEHG--CEVNIVTYNALVNGFCVQG-RVDSALELFY 449
Query: 109 ----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+P+ +T + L +++ A LL M+Q+D PN T+N L+ F
Sbjct: 450 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC ++ +YN L++G D N E+A+ L ++S G+ D TY+++
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSI- 568
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I L + V EA+K+F + + N ++ LCK
Sbjct: 569 ----------------IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 612
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A D F ++ N G P+ +TY +I G E ++ LL ++ G+
Sbjct: 613 TDGAIDFFAYMVSN-GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
AN L +I RD + L+D S+G DVY LI C+ DA +
Sbjct: 46 ANARLRRLIARD---DLAEAARLVDRAT--SRGEAPDVYLCTKLIRNLCRRGRTSDAARV 100
Query: 191 CREMLSEGIRADATTYNTL---------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
R G D YNTL +A V PD++ YT I GL G
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGR 160
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V EA+ + + + C ++ T L++ +CK A ++ M+ G TP++VTYN
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE-MRAKGCTPNIVTYN 219
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+G C+EG+ A L + G +P+
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPD 249
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/362 (28%), Positives = 166/362 (45%), Gaps = 67/362 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
FNSLI+ G E+ +LF+ + + P V+TFN++ LV L +++EM+
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKD 125
+GV KPD T +I G CK+ M+D+G PDVVT N + D L +
Sbjct: 218 KTYGV--KPDTYTYNILIRGFCKNS-MVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRA 274
Query: 126 GKMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
GK++ A+ L+ M + +D++P+ TY TL+ G+ +G + ++
Sbjct: 275 GKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIV 334
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIR-ADATTYNTL-------------FMAINN 215
+YN LI G C+ + + + +M +G DA T+NTL F N
Sbjct: 335 TYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFEN 394
Query: 216 -----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-------IETCNCLID 263
V DS Y+ I L + G +A +F + + +L+ + C+
Sbjct: 395 MKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQ 454
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ G+ K A + LM+ T D ++Y I+I G CKEG ++ GLL+ M
Sbjct: 455 YLCENGKTKKAERVLRQLMKRG--TQDPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFL 512
Query: 324 PN 325
P+
Sbjct: 513 PD 514
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/326 (19%), Positives = 140/326 (42%), Gaps = 54/326 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
+P++VT+ +LI+G C + + EA + +++N PN++T+NTL
Sbjct: 294 LSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMK 353
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGMR-----PDVVTLNVMT 119
+ E+M + G I PD T +I+ C + F + + M+ D + +V+
Sbjct: 354 EILEQMKGDGGSI--PDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLI 411
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L + G +A L + + ++++ L+ + G + SY + C
Sbjct: 412 RTLCQKGDYGKAEMLFDELFEKEI---------LLSSY-----GPKPLAASYKCMFQYLC 457
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
++ + A + R+++ G + D +Y + + H +G Y+NG+ L
Sbjct: 458 ENGKTKKAERVLRQLMKRGTQ-DPLSYQIVILG--------HCK----EGSYENGYGLLV 504
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + I+ + LIDG + + +A + ++++ P T++ +++
Sbjct: 505 WML-----RRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKS-SYKPQTSTWHSILN 558
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
++G ++ G+++ M E + N
Sbjct: 559 RLLEQGCVHESAGVIVMMLERNIRQN 584
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 140/344 (40%), Gaps = 58/344 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ TFN+LI C G + EA ++F+ + + +++ L A L
Sbjct: 367 PDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEML 426
Query: 72 FEEMVNEFGVIC----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
F+E+ + ++ KP + + LC++G +M +G + D ++ +
Sbjct: 427 FDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-DPLSYQI 485
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ K+G E LL M++RD P+ Y+ L+DGF K
Sbjct: 486 VILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSS 545
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT-TYNTLFMAINNVPPDSHV 222
+ +++ ++N + V ++ + ML IR + + L + + D
Sbjct: 546 YKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAF 605
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT----------------IETCNCLIDGLC 266
T + +YKNGF ++ +V + N + L I CN +I LC
Sbjct: 606 KITEL--IYKNGFCVKMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIVILDLC 663
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
K+ + A+ + + L+ + GL D++ N ++ G+ ++A
Sbjct: 664 KLNKASEAFSLCYELV-DKGLHQDLICLNDLVAALEAGGRTEEA 706
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 151/357 (42%), Gaps = 58/357 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+ T+ +I+GLC GR+ EA L + C P+V+T+ L A+
Sbjct: 142 APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAME 201
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
+ +EM + C P++VT II+G+C++G + D G +PD V+ +
Sbjct: 202 VLDEMRAKG---CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 258
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L + E+ L M++++ PN T++ L+ F GC
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 318
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ NI+IN CK V+DA M S G D +Y T+
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M N PP+ + T+I L + G + +A + + H C + I T N L++G C
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 438
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++F+ + P+ +TY ++ G C + A LL +M + PN
Sbjct: 439 GRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPN 491
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 58/375 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L R+ F P+ V++ +++KGLC R + LF ++ C PN +TF
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+ L A+ + E+M G C + C +I+ +CK G + D
Sbjct: 289 DMLVRFFCRGGMVERAIQVLEQMS---GHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGF 157
G PD ++ + L + + E+A LL+ M++++ PN T+NT + G
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGL 405
Query: 158 AWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ GC ++ +YN L+NG+C V+ A+ L S + + TY T
Sbjct: 406 IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL---FYSMPCKPNTITYTT 462
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + N P+ + + + G + EA+++ + H
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C + T N L+DG+ K + A ++ H L+ N G++PD+VTY+ +I +E + ++A
Sbjct: 523 CTPNLITYNTLLDGITKDCNSEEALELLHGLVSN-GVSPDIVTYSSIIGVLSREDRVEEA 581
Query: 311 NGLLLDMEETGLEPN 325
+ +++ G+ P
Sbjct: 582 IKMFHIVQDLGMRPK 596
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 138/341 (40%), Gaps = 61/341 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-----LVALNLFEE 74
P++ LI+ LC GR +AAR+ + +V +NTL L+
Sbjct: 75 APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
++ V PD T T II GLC G M+ +G +P VVT V+ + + K
Sbjct: 135 LIASMPV--APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCK 192
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
+A +L+ M + PN + +YN++ING C++ V
Sbjct: 193 STGFGQAMEVLDEMRAKGCTPN---------------------IVTYNVIINGMCREGRV 231
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+DA + S G + D +Y T+ M N P+ +
Sbjct: 232 DDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQN 284
+ + G V A++V + H C CN +I+ +CK GR+ D F L M +
Sbjct: 292 VRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVD---DAFQFLNNMGS 348
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD ++Y ++ G C+ + + A LL +M PN
Sbjct: 349 YGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 53/352 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L + +P+ +++ +++KGLC R +A L K++ C PN +TF
Sbjct: 334 GRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTF 393
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM---- 108
NT + A L E+M +E G C+ ++VT +++G C G +D +
Sbjct: 394 NTFICILCQKGLIEQATMLIEQM-SEHG--CEVNIVTYNALVNGFCVQG-RVDSALELFY 449
Query: 109 ----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------- 157
+P+ +T + L +++ A LL M+Q+D PN T+N L+ F
Sbjct: 450 SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509
Query: 158 -------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC ++ +YN L++G KD N E+A+ L ++S G+ D TY+++
Sbjct: 510 EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSI- 568
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I L + V EA+K+F + + N ++ LCK
Sbjct: 569 ----------------IGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCN 612
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
A D F ++ N G P+ +TY +I G E ++ LL ++ G+
Sbjct: 613 TDGAIDFFAYMVSN-GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGV 663
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
AN L +I RD + L+D S+G DVY LI C+ DA +
Sbjct: 46 ANARLRRLIARD---DLAEAARLVDRAT--SRGEAPDVYLCTKLIRNLCRRGRTSDAARV 100
Query: 191 CREMLSEGIRADATTYNTL---------------FMAINNVPPDSHVYTTYIDGLYKNGF 235
R G D YNTL +A V PD++ YT I GL G
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGR 160
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V EA+ + + + C ++ T L++ +CK A ++ M+ G TP++VTYN
Sbjct: 161 VGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDE-MRAKGCTPNIVTYN 219
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+G C+EG+ A L + G +P+
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPD 249
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/373 (29%), Positives = 158/373 (42%), Gaps = 72/373 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ TFN LIK LC +I A + ++++ + P+ TF TL A +
Sbjct: 191 PDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRV 250
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------------------------MMD 105
E+M++ C VT ++ G CK+G M +
Sbjct: 251 KEQMLD---AGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKN 307
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G +PD T N++ D+L GK++EA LL M N TYNTL+DGF K
Sbjct: 308 KGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEE 367
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
G + +YN LI+G CK R V++A L +M+ EG++ D TYN++
Sbjct: 368 AEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLT 427
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N PD Y T I GL K G V A ++ +I VL
Sbjct: 428 YFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVL 487
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T N +I L K R K A +F M+ G TPD TY I+ G G +A
Sbjct: 488 TPHAYNPVIQALFKRKRTKEAMRLFRE-MEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVD 546
Query: 313 LLLDMEETGLEPN 325
+++M E G P
Sbjct: 547 FVIEMIEKGFLPE 559
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 120/238 (50%), Gaps = 18/238 (7%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G++PDV T N++ L K ++ A ++E M + P+ T+ TLM GF
Sbjct: 184 MVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGN 243
Query: 158 ---AWWSK------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YN 207
A+ K GC + N+L++G+CK+ +E+A+S EM +EG A YN
Sbjct: 244 MDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYN 303
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M PD Y ID L G + EA+ + + C + T N LIDG CK
Sbjct: 304 E--MKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCK 361
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ A +IF M+ GL+ + VTYN +I G CK + Q+A L+ M GL+P+
Sbjct: 362 NKKIEEAEEIFDQ-MEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPD 418
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 140/320 (43%), Gaps = 49/320 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
P+ T+N LI LC G++ EA L +++ + C NVIT+NTL + EE+
Sbjct: 312 PDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEI 371
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKD------GFMMDQ----GMRPDVVTLNVMTDNLSK 124
++ + + VT +IDGLCK +MDQ G++PD T N M +
Sbjct: 372 FDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCR 431
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+G +++A +++ M P+ TY TL+ G + KG ++
Sbjct: 432 EGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHA 491
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN +I K + ++A+ L REM +G DA TY +F ++N ++ +
Sbjct: 492 YNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEM 551
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ GF+ E FS+ L +GLC + + ++M+ + +
Sbjct: 552 IEKGFLPE----FSSF------------YMLAEGLCSLSMEDTLIKLVDLVMEKANFSQN 595
Query: 291 VVTYNIMIHGFCKEGQHQKA 310
V +MI GF K + Q A
Sbjct: 596 EV---VMIRGFLKIRKFQDA 612
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 130/305 (42%), Gaps = 64/305 (20%)
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
N L LV N+ MV++ G+ KPDV T +I LCK M G+ PD
Sbjct: 172 NKLKLVE-NVHSTMVSK-GI--KPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPD 227
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------- 157
T + ++G M+ A + E M+ T N L+ GF
Sbjct: 228 EKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFID 287
Query: 158 ----------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
+KGC+ D ++YN+LI+ C +++A+ L REM G
Sbjct: 288 EMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCAR 347
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
+ TYNTL IDG KN + EA ++F + T N L
Sbjct: 348 NVITYNTL-----------------IDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTL 390
Query: 262 IDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
IDGLCK R++ A + M+M+ GL PD TYN M+ FC+EG QKA ++ M
Sbjct: 391 IDGLCKSRRVQEAAQLMDQMIME--GLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSN 448
Query: 321 GLEPN 325
G EP+
Sbjct: 449 GCEPD 453
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 112/264 (42%), Gaps = 50/264 (18%)
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVM-IQRDVNPNTCTYN----TLMDG--------- 156
D L + D+ +K EE C++EVM ++ + +T YN L+DG
Sbjct: 121 DRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENV 180
Query: 157 -FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMA 212
SKG + DV ++NILI CK + A+ + EM S G+ D T+ TL F+
Sbjct: 181 HSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIE 240
Query: 213 INNVPPDSHVYTTYID---------------GLYKNGFVLEAMKVFSAIGNH-KCVLTIE 256
N+ V +D G K G + EA+ + N K + IE
Sbjct: 241 EGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIE 300
Query: 257 ---------------TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
T N LID LC G+L+ A + M+ G +V+TYN +I GF
Sbjct: 301 LYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLRE-MEISGCARNVITYNTLIDGF 359
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK + ++A + ME GL N
Sbjct: 360 CKNKKIEEAEEIFDQMEIQGLSRN 383
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 35/219 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L+ +++M P+ T+NS++ C EG I +AA + + + C+P+++T+
Sbjct: 399 RVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYG 458
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
TL VA L + G++ P +I L K M
Sbjct: 459 TLIGGLCKAGRVEVASRLLRS-IQLKGMVLTPHAY--NPVIQALFKRKRTKEAMRLFREM 515
Query: 104 MDQGMRPDVVTLNVMTDNLSKD-GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
++G PD T ++ LS G + EA + MI++ P ++ L +G S
Sbjct: 516 EEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSM 575
Query: 163 G----------CRHDVYSYN--ILINGYCKDRNVEDAVS 189
+S N ++I G+ K R +DA++
Sbjct: 576 EDTLIKLVDLVMEKANFSQNEVVMIRGFLKIRKFQDALA 614
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 53/339 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+PN++ ++S+I GLC G + +A L +++ PNV T +L A
Sbjct: 897 LSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAF 956
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF +++ KP+V T T +I G CK+ M +QG+ P+ T +
Sbjct: 957 RLFLKLIRSDNY--KPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 1014
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDV- 168
D K G +A L+E+M PNTCTYN+++DG F + G ++ +
Sbjct: 1015 DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIE 1074
Query: 169 ---YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+Y ILI+ CK ++ A+ +M G + PD H+YTT
Sbjct: 1075 ADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQ-----------------PDIHLYTT 1117
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I + + ++ K+F + T ET +I G C+ ++ +A F M +
Sbjct: 1118 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQK-MSDH 1176
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G PD ++Y +I G CKE + +A L M + GL P
Sbjct: 1177 GCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSP 1215
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 45/244 (18%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKM---EEANCLLEVMIQRDVNPNTCTYNTLMDGFAW 159
M +QG+ V+T VM + +M E A + + M R V P++CTY
Sbjct: 787 MRNQGL---VLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYK-------- 835
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------I 213
+I GYC++ NV +A EM+ G D T + A +
Sbjct: 836 -------------YIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLV 882
Query: 214 NN------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
N + P+ Y++ I GL K G V +A ++ + + + T L
Sbjct: 883 NRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSL 942
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I GLCK G + A+ +F L+++ P+V TY MI G+CKE + +A L M+E G
Sbjct: 943 IHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQG 1002
Query: 322 LEPN 325
L PN
Sbjct: 1003 LVPN 1006
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 111/273 (40%), Gaps = 53/273 (19%)
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L A N+F+EM + GV PD T II G C++G MM++G D
Sbjct: 811 LVEYAGNVFDEM-SARGVY--PDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNA 867
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
TL ++ + + A + + ++PN Y+++
Sbjct: 868 TLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSM-------------------- 907
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
I+G CK +V+ A L EM+ G + P+ + +T+ I GL K
Sbjct: 908 -ISGLCKRGSVKQAFELLEEMVKNGWK-----------------PNVYTHTSLIHGLCKK 949
Query: 234 GFVLEAMKVF-SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G+ A ++F I + + T +I G CK +L A +F M+ GL P+
Sbjct: 950 GWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER-MKEQGLVPNTN 1008
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I G CK G KA L+ M G PN
Sbjct: 1009 TYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN 1041
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
V L ++ F P++ + +LI C + + ++ +LF ++ P T+ ++
Sbjct: 1096 ALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMIC 1155
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
+A+ F++M + C PD ++ +I GLCK+ M+D+G
Sbjct: 1156 GYCREKKVSLAVKFFQKMSDHG---CAPDSISYGALISGLCKESRLDEARQLYDTMIDKG 1212
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ P VT +T K A +LE + ++
Sbjct: 1213 LSPCEVTRVTLTYEYCKTEDFASAMVILERLNKK 1246
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 155/353 (43%), Gaps = 54/353 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L + PN V + SLI+ GR + +++ ++ C P+++
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT LF+E+ N G I PD + T +I GL K GF
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKN-LGFI--PDARSYTILIHGLVKAGFAHEAYELFYT 609
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG D N + D K GK+ +A LLE M + P TY +++DG A
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDR 669
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F ++ + KC T + LI GLCKI
Sbjct: 730 L-----------------LDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ A+ +F MQ G P+V TY MI G K G +A+ L +E G
Sbjct: 773 RKFNKAF-VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 153/358 (42%), Gaps = 60/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G G+ +A L ++ C P+V+++N + AL
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKK 397
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEEM + P++ T +ID LCK G M D G+ P+V+T+N+M D
Sbjct: 398 FEEMKKD----AIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDR 453
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
L K ++++A + E + + P+ TY +L++G G + Y
Sbjct: 454 LCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG--RHGRVDEAYKLYEQMLDANQI 511
Query: 171 -----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------L 209
Y LI + K ED + EML G D NT L
Sbjct: 512 PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRAL 571
Query: 210 FMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
F I N+ PD+ YT I GL K GF EA ++F + CVL N +IDG CK
Sbjct: 572 FQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCK 631
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A+ + M+ G P VVTY +I G K + +A L + + G+E N
Sbjct: 632 SGKVNKAYQLLEE-MKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T N ++ LC R+ +A +F+ L+ C P+ +T+ +L A L
Sbjct: 442 PNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501
Query: 72 FEEMVNEFGVICKPDVVTCTNIID-----GLCKDGF-----MMDQGMRPDVVTLNVMTDN 121
+E+M++ + P+ V T++I G +DG M+ G PD++ LN D
Sbjct: 502 YEQMLDANQI---PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDC 558
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHD 167
+ K G++E+ L + + P+ +Y L+ G + +GC D
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH------ 221
+YN +I+G+CK V A L EM ++G TY ++ + +
Sbjct: 619 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFE 678
Query: 222 ------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+Y++ IDG K G + EA + + + T NCL+D L K
Sbjct: 679 EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A F M++ TP+ +TY+I+IHG CK + KA +M++ G +PN
Sbjct: 739 EISEALVCFQS-MKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 159/424 (37%), Gaps = 120/424 (28%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVAL 69
+ N+ F +LI+ EGR+ A L ++ +P+V+ +N +A
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290
Query: 70 NLFEEM------------VNEFGVICKPD----------------VVTCTNIID------ 95
F EM + GV+CK D V C +
Sbjct: 291 KXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350
Query: 96 ---GLCKDGFMMDQGMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
G +D + + + R P VV+ N + L + G+++EA E M ++D PN
Sbjct: 351 GMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNL 409
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TYN ++D A G +V + NI+++ CK + ++DA S+
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469
Query: 194 MLSEGIRADATTYNTLFMAI-------------------NNVP----------------- 217
+ + R DA TY +L + N +P
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529
Query: 218 -----------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
PD + TY+D ++K G + + +F I N + +
Sbjct: 530 KEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI 589
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K G A+++F+ M+ G D YN +I GFCK G+ KA LL +M+
Sbjct: 590 LIHGLVKAGFAHEAYELFYT-MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648
Query: 321 GLEP 324
G EP
Sbjct: 649 GHEP 652
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 53/276 (19%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----LALV-----ALNLFEEM 75
+N++I G C G++ +A +L +++ +P V+T+ + LA + A LFEE
Sbjct: 621 AYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
++ G+ + +VV +++IDG K G +M +G+ P+V T N + D L K
Sbjct: 681 KSK-GI--ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWS----KGCRHDVYSY 171
++ EA + M PN TY+ L+ G F +W +G + +V++Y
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I+G K N+ +A +L + +G AD+ YN + ++N S Y + +
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
K C + +TC L+D L K
Sbjct: 858 KG-----------------CSIYTKTCVVLLDSLHK 876
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLF 72
N+V ++SLI G GRI EA + ++L PNV T+N L ALV AL F
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNL 122
+ M + + C P+ +T + +I GLCK F M QG +P+V T M L
Sbjct: 748 QSMKD---LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+K G + EA+ L E ++ ++ YN +++G +
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 84/216 (38%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K K+ EA ++ M + P Y L+ + G +V+
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVH 236
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+ LI + ++ V+ A+SL EM S N++ PD +Y ID
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKS-----------------NSLEPDVVLYNVCIDC 279
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G V A K F + + VL T +I LCK RL A ++F + QN + P
Sbjct: 280 FGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-P 338
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN MI G+ G+ + A LL G P+
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 155/353 (43%), Gaps = 54/353 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + L ++L + PN V + SLI+ GR + +++ ++ C P+++
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT LF+E+ N G I PD + T +I GL K GF
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKN-LGFI--PDARSYTILIHGLVKAGFAHEAYELFYT 609
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG D N + D K GK+ +A LLE M + P TY +++DG A
Sbjct: 610 MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDR 669
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 670 LDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNC 729
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F ++ + KC T + LI GLCKI
Sbjct: 730 L-----------------LDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ A+ +F MQ G P+V TY MI G K G +A+ L +E G
Sbjct: 773 RKFNKAF-VFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 153/358 (42%), Gaps = 60/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G G+ +A L ++ C P+V+++N + AL
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKK 397
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEEM + P++ T +ID LCK G M D G+ P+V+T+N+M D
Sbjct: 398 FEEMKKD----AIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDR 453
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
L K ++++A + E + + P+ TY +L++G G + Y
Sbjct: 454 LCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLG--RHGRVDEAYKLYEQMLDANQI 511
Query: 171 -----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------L 209
Y LI + K ED + EML G D NT L
Sbjct: 512 PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRAL 571
Query: 210 FMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
F I N+ PD+ YT I GL K GF EA ++F + CVL N +IDG CK
Sbjct: 572 FQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCK 631
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A+ + M+ G P VVTY +I G K + +A L + + G+E N
Sbjct: 632 SGKVNKAYQLLEE-MKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELN 688
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 55/356 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T N ++ LC R+ +A +F+ L+ C P+ +T+ +L A L
Sbjct: 442 PNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKL 501
Query: 72 FEEMVNEFGVICKPDVVTCTNIID-----GLCKDGF-----MMDQGMRPDVVTLNVMTDN 121
+E+M++ + P+ V T++I G +DG M+ G PD++ LN D
Sbjct: 502 YEQMLDANQI---PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDC 558
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHD 167
+ K G++E+ L + + P+ +Y L+ G + +GC D
Sbjct: 559 VFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLD 618
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH------ 221
+YN +I+G+CK V A L EM ++G TY ++ + +
Sbjct: 619 TRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFE 678
Query: 222 ------------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+Y++ IDG K G + EA + + + T NCL+D L K
Sbjct: 679 EAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A F M++ TP+ +TY+I+IHG CK + KA +M++ G +PN
Sbjct: 739 EISEALVCFQS-MKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPN 793
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 159/424 (37%), Gaps = 120/424 (28%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVAL 69
+ N+ F +LI+ EGR+ A L ++ +P+V+ +N +A
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAW 290
Query: 70 NLFEEM------------VNEFGVICKPD----------------VVTCTNIID------ 95
F EM + GV+CK D V C +
Sbjct: 291 KFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGY 350
Query: 96 ---GLCKDGFMMDQGMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
G +D + + + R P VV+ N + L + G+++EA E M ++D PN
Sbjct: 351 GMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPNL 409
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TYN ++D A G +V + NI+++ CK + ++DA S+
Sbjct: 410 STYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEG 469
Query: 194 MLSEGIRADATTYNTLFMAI-------------------NNVP----------------- 217
+ + R DA TY +L + N +P
Sbjct: 470 LDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGR 529
Query: 218 -----------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
PD + TY+D ++K G + + +F I N + +
Sbjct: 530 KEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI 589
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K G A+++F+ M+ G D YN +I GFCK G+ KA LL +M+
Sbjct: 590 LIHGLVKAGFAHEAYELFYT-MKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648
Query: 321 GLEP 324
G EP
Sbjct: 649 GHEP 652
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 53/276 (19%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----LALV-----ALNLFEEM 75
+N++I G C G++ +A +L +++ +P V+T+ + LA + A LFEE
Sbjct: 621 AYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 680
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
++ G+ + +VV +++IDG K G +M +G+ P+V T N + D L K
Sbjct: 681 KSK-GI--ELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWS----KGCRHDVYSY 171
++ EA + M PN TY+ L+ G F +W +G + +V++Y
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+I+G K N+ +A +L + +G AD+ YN + ++N S Y + +
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
K C + +TC L+D L K
Sbjct: 858 KG-----------------CSIYTKTCVVLLDSLHK 876
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNLF 72
N+V ++SLI G GRI EA + ++L PNV T+N L ALV AL F
Sbjct: 688 NVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCF 747
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNL 122
+ M + + C P+ +T + +I GLCK F M QG +P+V T M L
Sbjct: 748 QSMKD---LKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGL 804
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+K G + EA+ L E ++ ++ YN +++G +
Sbjct: 805 AKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 84/216 (38%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K K+ EA ++ M + P Y L+ + G +V+
Sbjct: 177 KSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVH 236
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+ LI + ++ V+ A+SL EM S N++ PD +Y ID
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKS-----------------NSLEPDVVLYNVCIDC 279
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G V A K F + + VL T +I LCK RL A ++F + QN + P
Sbjct: 280 FGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-P 338
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN MI G+ G+ + A LL G P+
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPS 374
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 160/380 (42%), Gaps = 76/380 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RA LG +L S T N+V N+++ G C EG++ EA RL +++ PNV+TFN
Sbjct: 193 RAGRSMDALG-VLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFN 251
Query: 63 TL---------ALVALNLFEEMVNEFGV-ICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
L A +F +M ++ + +PD VT ++ G C+ G M+D+
Sbjct: 252 ARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVMLSGFCEAG-MVDEARVLVD 310
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
G V + N L ++G + EA LL M V PN+ TYN ++DG
Sbjct: 311 IMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLREMAHEGVQPNSYTYNIIVDGLCKEG 370
Query: 162 KG--------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K DV +Y L++ YC + N A + EM +G ++ TYN
Sbjct: 371 KAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYN 430
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
L + L+K G + EA ++ + L +CN +IDGLC+
Sbjct: 431 VL-----------------LQSLWKAGRITEAERLLERMSEKGYSLDTASCNIIIDGLCR 473
Query: 268 IGRLKIAWDIFHMLMQNPGLT----------------------PDVVTYNIMIHGFCKEG 305
+L +A DI + L PD +TY+ ++ CKEG
Sbjct: 474 NNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSALCKEG 533
Query: 306 QHQKANGLLLDMEETGLEPN 325
+ +A LL+M + P+
Sbjct: 534 RFDEAKKKLLEMIGKDISPD 553
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 177/441 (40%), Gaps = 125/441 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF----KKLNVFCCDPN 57
G+ L+ R+ PN+VTFN+ I LC GR+L+A R+F +K P+
Sbjct: 226 GQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPD 285
Query: 58 VITFNTL-------------------------------------ALV-------ALNLFE 73
+TF+ + LV A L
Sbjct: 286 QVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQELLR 345
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
EM +E GV +P+ T I+DGLCK+G F+ M PDVVT +
Sbjct: 346 EMAHE-GV--QPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYC 402
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDV 168
+G AN +L+ M Q+ PN+ TYN L+ W + KG D
Sbjct: 403 SEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSL-WKAGRITEAERLLERMSEKGYSLDT 461
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRA-----------------------DATT 205
S NI+I+G C++ ++ A+ + M +EG A D T
Sbjct: 462 ASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRIT 521
Query: 206 YNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y+TL A+ ++ PDS +Y T+I G K+G A+KV +
Sbjct: 522 YSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDME 581
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWD-IFHML--MQNPGLTPDVVTYNIMIHGFCKE 304
C + T N LI G R K D I ++ M+ G+ P+V+TYN +I FC+
Sbjct: 582 KKGCKPSTRTYNLLIWGF----REKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCER 637
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G KA LL +M + + PN
Sbjct: 638 GMVNKAMPLLDEMLQNEIVPN 658
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 59/328 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
+L+S P++ T N L++ LC GR+ A R+F + + N +F LA
Sbjct: 141 LLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP----ERNEFSFGILARGYCRAGR 196
Query: 74 EMVNEFGVI-CKP--DVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
M + GV+ P ++V C ++ G C++G M D+G+ P+VVT N
Sbjct: 197 SM-DALGVLDSMPTMNLVVCNTVVAGFCREGQVDEAERLVERMRDEGLAPNVVTFNARIS 255
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYC 179
L K G++ +A Y D W +G R D +++++++G+C
Sbjct: 256 ALCKAGRVLDA------------------YRIFNDMQEKWERGLPRPDQVTFDVMLSGFC 297
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ V++A L M G +YN ++ GL +NG V EA
Sbjct: 298 EAGMVDEARVLVDIMRCGGFLRRVESYN-----------------RWLSGLVRNGMVGEA 340
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM--LMQNPGLTPDVVTYNIM 297
++ + + T N ++DGLCK G+ A+D+ + +++ +TPDVVTY +
Sbjct: 341 QELLREMAHEGVQPNSYTYNIIVDGLCKEGK---AFDVRKVEDFVKSGVMTPDVVTYTSL 397
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+H +C EG AN +L +M + G PN
Sbjct: 398 LHAYCSEGNAAAANRILDEMAQKGCAPN 425
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 144/360 (40%), Gaps = 82/360 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
TP++VT+ SL+ C+EG A R+ ++ C PN T+N L A
Sbjct: 388 TPDVVTYTSLLHAYCSEGNAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAER 447
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCK-----------DGFMMDQGMR---------- 109
L E M +E G D +C IIDGLC+ DG + +
Sbjct: 448 LLERM-SEKGYSL--DTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLS 504
Query: 110 ------------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
PD +T + + L K+G+ +EA L MI +D++P++ Y+T + G+
Sbjct: 505 LLTDSSSSKRCLPDRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGY 564
Query: 158 A--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
KGC+ +YN+LI G+ + N ++ + L EM +GI +
Sbjct: 565 CKHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNV 624
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
TYN+L I + G V +AM + + ++ V I + LI
Sbjct: 625 MTYNSL-----------------IKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIK 667
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
CK A +F + G V Y++M G+ +A +L ET LE
Sbjct: 668 AFCKTSDFSAAQRVFDASLSTCGQKE--VLYSLMCTQLSTYGRWLEAMNIL----ETVLE 721
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 163/357 (45%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++L ++L S TPN V + SLI+ GR + +++K++ C P+++
Sbjct: 495 GKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLL 554
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N LFEE+ + G+ PDV + + +I GL K GF
Sbjct: 555 NNYMDCVFKAGEIEKGRALFEEIKAQ-GLT--PDVRSYSILIHGLVKGGFSKDTYKLFYE 611
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M +QG+ D N++ D K GK+ +A LLE M + + P TY +++DG A
Sbjct: 612 MKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDR 671
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SK +V Y+ LI+G+ K +++A + E++ +G+ + T+N
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +D L K + EA+ F + N KC T + +++GLCK+
Sbjct: 732 L-----------------LDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKV 774
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G + G +A L + +G P+
Sbjct: 775 RKFNKAF-VFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPD 830
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 149/337 (44%), Gaps = 55/337 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P + +N++I G + G+ EA L ++ C P+VI +N + AL +
Sbjct: 340 PCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRI 399
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
E M + P++ + +ID LCK G M + G+ P+++T+N+M D
Sbjct: 400 LEAMKMD----AAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDR 455
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K +++EA + + + P++ T+ +L+DG K G +
Sbjct: 456 LCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPN 515
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
Y LI + K ED + +EM+ G D M +NN Y+
Sbjct: 516 AVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPD-------LMLLNN----------YM 558
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
D ++K G + + +F I + + + LI GL K G K + +F+ M+ GL
Sbjct: 559 DCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE-MKEQGL 617
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
D YNI+I GFCK G+ KA LL +M+ GL+P
Sbjct: 618 HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQP 654
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 133/341 (39%), Gaps = 57/341 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P + +LI L L +++ + V F TL V AL
Sbjct: 198 FRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAAL 257
Query: 70 NLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
+L +EM N F D+V ID K G + QG+ PD VT M
Sbjct: 258 SLLDEMKSNSFNA----DLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSM 313
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGC 164
L K +++EA L E + P YNT++ G+ KGC
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGC 373
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
V +YN ++ + VE+A+ + E ++ DA P+ Y
Sbjct: 374 IPSVIAYNCILTCLGRKGKVEEALRIL-----EAMKMDAA-------------PNLTSYN 415
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
ID L K G + A+KV ++ I T N +ID LCK RL A IF + + +
Sbjct: 416 ILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIF-LGLDH 474
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPD VT+ +I G + G+ A L M ++G PN
Sbjct: 475 KVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPN 515
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 50/280 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + LL + P +VT+ S+I GL R+ EA LF++ D NV+ +
Sbjct: 635 GKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVY 694
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
++L ++ FG + + D I++ L M +G+ P+ T N + D
Sbjct: 695 SSL-----------IDGFGKVGRIDEAYL--ILEEL------MQKGLTPNTYTWNCLLDA 735
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWS----KGCRHD 167
L K +++EA + M PN TY+ +++G F +W +G + +
Sbjct: 736 LVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPN 795
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+Y +I+G + NV +A L S G D+ YN + ++N Y +
Sbjct: 796 TITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFE 855
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ K C + +TC L+D L K
Sbjct: 856 ETRLKG-----------------CRIYSKTCVVLLDALHK 878
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 39/173 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR +++L ++ TPN T+N L+ L I EA F+ + C PN +T
Sbjct: 704 VGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVT 763
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
++ + ++GLCK F M QG++P
Sbjct: 764 YSIM-----------------------------VNGLCKVRKFNKAFVFWQEMQKQGLKP 794
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ +T M L++ G + EA L E P++ YN +++G + +K
Sbjct: 795 NTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKA 847
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS------------- 220
++ + K R + +A + M R + Y TL A++
Sbjct: 173 MVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIG 232
Query: 221 -----HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
H++TT I + G V A+ + + ++ + N ID K+G++ +AW
Sbjct: 233 YEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAW 292
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
FH L ++ GL PD VT+ MI CK + +A L +++ P
Sbjct: 293 KFFHEL-KSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVP 340
>gi|302806553|ref|XP_002985026.1| hypothetical protein SELMODRAFT_121322 [Selaginella moellendorffii]
gi|300147236|gb|EFJ13901.1| hypothetical protein SELMODRAFT_121322 [Selaginella moellendorffii]
Length = 288
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 34/295 (11%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++VT+ SL+ GL E R EA +LFK++ + + + L L+ + + +
Sbjct: 1 PDVVTYTSLMDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIGGLLQAGIIPQASSV 60
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
+ + C PDVVT + +IDGL K G + +R + ++ S + K+EEA L
Sbjct: 61 YKTMTSQGCVPDVVTLSTMIDGLSKAG-RIGAAVR---IFKSMEARGPSSNEKIEEAVAL 116
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSK------GCRHDVYSYNILINGYCKDRNVEDAV 188
+E + P TYN L++G + R V +Y LI+G K++ +A
Sbjct: 117 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVVTYTSLIDGLGKEKRSFEAY 176
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L +EM S G+ DS YT +I GL + G + +A V+ + +
Sbjct: 177 KLFKEMASRGLAL-----------------DSVCYTAFIRGLLQAGKIPQASSVYKTMMS 219
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
CV + T + +IDGL K GR+ A F M+ GL P+ V Y+ +IHG CK
Sbjct: 220 QGCVPDVVTLSTMIDGLSKAGRIGAAVRFFKS-MEARGLAPNEVVYSALIHGLCK 273
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
L+ +I + TP + T+N+L+ GLC GR+ EA L +K+ V+T+ +L
Sbjct: 115 ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI--------VVTYTSLIDGL 166
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMR 109
+ A LF+EM + + D V T I GL + G MM QG
Sbjct: 167 GKEKRSFEAYKLFKEMASRGLAL---DSVCYTAFIRGLLQAGKIPQASSVYKTMMSQGCV 223
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVVTL+ M D LSK G++ A + M R + PN Y+ L+ G K
Sbjct: 224 PDVVTLSTMIDGLSKAGRIGAAVRFFKSMEARGLAPNEVVYSALIHGLCKARKSTFFPFP 283
Query: 170 SYNIL 174
+ +IL
Sbjct: 284 ALSIL 288
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV +Y L++G K++ +A L +EM S G+ D Y L
Sbjct: 2 DVVTYTSLMDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTAL----------------- 44
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNP 285
I GL + G + +A V+ + + CV + T + +IDGL K GR+ A IF M + P
Sbjct: 45 IGGLLQAGIIPQASSVYKTMTSQGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGP 104
Query: 286 -------------------GLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
G TP + TYN +++G CK G+ ++A LL
Sbjct: 105 SSNEKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 152
>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
Length = 667
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 169/377 (44%), Gaps = 91/377 (24%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVA 68
CF P++ N + LC R+ +A + + + + +P+V+T+ T+ A
Sbjct: 262 CF-PDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEA 320
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD---------------------------- 100
+ L+EEMV G+ KPD+V C +I GLCK
Sbjct: 321 VELWEEMVRR-GL--KPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNAL 377
Query: 101 --GF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM-IQRD 142
GF M G PDVVT N+ ++ G ++EA L+E M +
Sbjct: 378 ISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGI 437
Query: 143 VNPNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAV 188
VNP+ +YN ++ G F + S G D+ S NILI+ +CK + V A+
Sbjct: 438 VNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSAL 497
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L +EM +GI+ADA TY TL I+GLY G+ A ++F +
Sbjct: 498 KLFKEMGYKGIQADAVTYGTL-----------------INGLYGVGYYYLAEEIFEQMLK 540
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ V + N ++ LCK G+ + A IF ++Q ++PD++T+N +I+ K +
Sbjct: 541 ARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKE-VSPDIITFNTLIYWLGKCSRAI 599
Query: 309 KANGLLLDMEETGLEPN 325
+A L DM G+EP+
Sbjct: 600 EAIDLFRDMTARGIEPD 616
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 50/256 (19%)
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKD 125
+++FG C PD+ C +D LCK + D +G PDVVT + L +
Sbjct: 257 MDKFG--CFPDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDN 314
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE 185
+ EA L E M++R + P D+ + +LI G CK V+
Sbjct: 315 KQFAEAVELWEEMVRRGLKP---------------------DIVACGVLIFGLCKSDKVD 353
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
+A L MLS + + YN L I G ++G + +A K+ S
Sbjct: 354 EAFELALRMLSLNLELNVCIYNAL-----------------ISGFLRSGSINKAFKIISV 396
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ + C + T N ++ C G +K A + + + + PD +YN M+ G CK
Sbjct: 397 MRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAH 456
Query: 306 QHQKANGLLLDMEETG 321
Q +A G + D E G
Sbjct: 457 QLDRAFGFVSDHMEVG 472
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 57/309 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT--- 63
F L R+L N+ +N+LI G G I +A ++ + C+P+V+T+N
Sbjct: 355 AFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLN 414
Query: 64 ------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GFMMDQ---G 107
+ A L EEM E I PD + ++ GLCK GF+ D G
Sbjct: 415 HYCNTGMIKEAEKLIEEM--EMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVG 472
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH- 166
D+V+ N++ D K K+ A L + M + + + TY TL++G + G +
Sbjct: 473 GFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGL--YGVGYYYL 530
Query: 167 ---------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+V YNI+++ CK E A + +M+ + + D T+NTL
Sbjct: 531 AEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIY 590
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M + PDS + I GL + G +A +V+ + + +L
Sbjct: 591 WLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLENGIIL 650
Query: 254 TIETCNCLI 262
+ + LI
Sbjct: 651 DRDVSDRLI 659
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 19/173 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------------LFMAINNVPP 218
Y IL++GY + + + EM++ G R YN L +V
Sbjct: 164 YRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFIGVLVKNCCFDLVEKYYSVAL 223
Query: 219 D------SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
D S Y+ +I L ++ + ++ + + C I CN +D LCK RL
Sbjct: 224 DKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLH 283
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A M G PDVVTY ++ C Q +A L +M GL+P+
Sbjct: 284 DALKTLEN-MWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPD 335
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 161/399 (40%), Gaps = 101/399 (25%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
F +L+ + GR +A + F +++ F P +NT+ L+AL L+ M
Sbjct: 139 AFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V C P+ T ++DGLCK G M+D+G+ P+V V+ +L
Sbjct: 199 V---AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM------------------------------- 154
GK++EA LL M + P+ TYN +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315
Query: 155 --------------DGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
+GF ++ + DV Y I+I G + +EDA+S M
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+G D YNT+ M NN+ DS T I GL K G V E
Sbjct: 376 KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDE 435
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM--QNPGL--------- 287
AM++F +G H C T+ T N LIDG + GRL+ A +FH + NP L
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 288 -TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D + ++H C+ GQ KA LL + ++G+ P+
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 97/415 (23%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L R++ + PN T+N L+ GLC +G +A ++F ++ PNV + L
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 65 ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK--------------------- 99
+L +E V G + C PD VT + GLCK
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310
Query: 100 -------------------DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+GF M+++ + PDVV +M ++ G++E+A L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370
Query: 136 EVMIQRDVNPNTCTYNTLMD-----GFAWWSKGCRHDVYSYN---------ILINGYCKD 181
+VM ++ P+T YNT++ G + R ++ N I+I G CK
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP----- 218
V++A+ + EM G TYN L M + N P
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRL 490
Query: 219 --------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
DS + + ++G VL+A K+ +I + V + T N LI+GLCK
Sbjct: 491 TLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARN 550
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +F L Q G++PD +TY +I G + + A L ++ ++G P+
Sbjct: 551 LDGAVRLFKEL-QLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 66/322 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GF +L +P++V + +I+G GRI +A + P+ +N
Sbjct: 327 RFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYN 386
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ V A L EM+ V+ D T T +I GLCK G M
Sbjct: 387 TVLKVLCDHGDLERAHTLRSEMLQNNLVL---DSTTQTIMICGLCKRGLVDEAMQIFDEM 443
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ----------------------- 140
+ G P V+T N + D ++G++EEA L M
Sbjct: 444 GEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESL 503
Query: 141 RDVNPNTCTYNTLMDGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
R + + C ++ + G DV +YN LING CK RN++ AV L +E+
Sbjct: 504 RKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQL 563
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+GI D TY TL IDGL + +AM +F I ++
Sbjct: 564 KGISPDEITYGTL-----------------IDGLLRAHRENDAMMLFQNILQSGSSPSLS 606
Query: 257 TCNCLIDGLCKIGRLKIAWDIF 278
N ++ LC++ +L A +++
Sbjct: 607 IYNSMMRSLCRMKKLSQAINLW 628
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 140/340 (41%), Gaps = 48/340 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------- 65
P ++T+N+LI G EGR+ EA LF K+ + +P++ TL
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTLGANQVCDSESLRKLVH 508
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQG 107
L A L +++ GV+ PDVVT +I+GLCK DG + +G
Sbjct: 509 DMCQSGQVLKAYKLLRSIIDS-GVV--PDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+ PD +T + D L + + +A L + ++Q +P+ YN++M K +
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREM----LSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ L Y E + +E+ L +G+R + + + I++ P Y
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVR-ELIKIDQEYGYISSNP-----Y 679
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ++ GL + +A+++F + +T C LI+ LC L A DI +
Sbjct: 680 TIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALS 739
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ V N ++ C + Q A L M G +
Sbjct: 740 KSIILSQPVG-NRLLRWLCICYRRQDAQALAWRMHLVGYD 778
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 153/343 (44%), Gaps = 61/343 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+PN+VT+ ++I LC GR+ +A ++ PN + +++L + A
Sbjct: 479 SPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKE 538
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
L EM+++ I +P++ ++II LC +G +M+ G RPD+ T N + D
Sbjct: 539 LVSEMMDQG--IPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLID 596
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
GKM++A +L+ M+ P+ TY+T LINGY K
Sbjct: 597 GYCLVGKMDKAFGVLDAMVSAGTEPDVVTYST---------------------LINGYFK 635
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHV 222
++D + L REML + ++ TY+ + M +
Sbjct: 636 SGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIST 695
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT + GL +N EA+ +F +G I N +I L K+ R + A D+F +
Sbjct: 696 YTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVS 755
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL P+ TY +MI KEG ++A+ + ME+TG P+
Sbjct: 756 AS-GLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPS 797
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 164/410 (40%), Gaps = 87/410 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR + + P++VTFNSL+ LC R EAA +F + P++I+
Sbjct: 355 LGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVT---CTNI-IDGLCKDGFMMD--------- 105
++ L F +M N F + +V C NI I+ K G MMD
Sbjct: 415 YSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRG-MMDEALLIFTEM 473
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
QG+ P+VVT + L + G++ +A L MI + PNT Y++L+ GF
Sbjct: 474 RGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDL 533
Query: 158 --------------------AWWSK------------------------GCRHDVYSYNI 173
++S G R D++++N
Sbjct: 534 IKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNS 593
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LI+GYC ++ A + M+S G D TY+TL M
Sbjct: 594 LIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKR 653
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V P + Y+ +DGL++ G A K+F + ++I T ++ GLC+ A
Sbjct: 654 VKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAI 713
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+FH L L ++ N MIH K + ++A+ L + +GL PN
Sbjct: 714 TLFHKL-GAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPN 762
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 49/340 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
++L ++ + P+ VT+ ++I G GR EAA++FK++ P+++TFN+L +L
Sbjct: 328 LVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSL 387
Query: 67 VALNLFEEMVNEFGVIC----KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDV 112
+E F I KPD+++ + ++ G +G M D G+ D
Sbjct: 388 CKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADS 447
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT----------LMDGFAWWSK 162
N++ + +K G M+EA + M + V+PN TY T L D S+
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
G + + Y+ LI G+C ++ A L EM+ +GI P
Sbjct: 508 MISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPR----------------P 551
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +++ I L G V+ A VF+ + + I T N LIDG C +G++ A+ +
Sbjct: 552 NITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVL 611
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
M + G PDVVTY+ +I+G+ K G+ +GL+L E
Sbjct: 612 DA-MVSAGTEPDVVTYSTLINGYFKSGRID--DGLILFRE 648
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 54/357 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA-ARLFKKLNVFCCDPNVITF 61
R G R+L + + + N+ +K LC R EA + L +++ C P+ ++
Sbjct: 180 RPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSY 239
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ + AL++ M G C PDVV+ T +I GL +G
Sbjct: 240 NTVIKSLCGGSRSQEALDMLLRMTKGDG--CSPDVVSYTMVIHGLFMEGEISKACNLFNE 297
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---W 159
M+ +G+ P+VVT N + L K M++A +L M + P+ TY ++ G++
Sbjct: 298 MVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGR 357
Query: 160 WSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
W + + D+ ++N L++ CK + ++A + + ++G + D +Y+
Sbjct: 358 WKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSI 417
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L H Y T G ++ +F ++ ++ V N LI+ K
Sbjct: 418 LL----------HGYAT-------EGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKR 460
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A IF M+ G++P+VVTY +I C+ G+ A L M GL+PN
Sbjct: 461 GMMDEALLIF-TEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPN 516
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 158 AWWSKGCRHD---------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A +++ CR + V++Y IL++ C+ R + + +L G+R D NT
Sbjct: 146 ALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNT 205
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK-VFSAIGNHKCVLTIETCNCLIDGLCK 267
+ Y D EA+ + + CV + N +I LC
Sbjct: 206 FLKCL--------CYAKRTD---------EALSMLLHRMSELGCVPDAFSYNTVIKSLCG 248
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + A D+ + + G +PDVV+Y ++IHG EG+ KA L +M + G+ PN
Sbjct: 249 GSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPN 306
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 154/326 (47%), Gaps = 61/326 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F PN+V++N++I G + G I A R+ + V +P+ T+ +L A
Sbjct: 204 FKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEAS 263
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF++MV E G++ P+ VT +IDG C G M+ +G+ P V T N++
Sbjct: 264 GLFDKMV-EIGLV--PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 320
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L +G+M EA+ +++ M ++ + P+ T YNILINGY
Sbjct: 321 HALFMEGRMGEADDMIKEMRKKGIIPDAIT---------------------YNILINGYS 359
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
+ N + A L EMLS+GI TY +L Y+ L + + EA
Sbjct: 360 RCGNAKRAFDLHNEMLSKGIEPTHVTYTSLI---------------YV--LSRRNRMKEA 402
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+F I + + N +IDG C G ++ A+ + M + PD VT+N ++
Sbjct: 403 DDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKE-MDRKSVPPDEVTFNTLMQ 461
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G C+EG+ ++A LL +M+ G++P+
Sbjct: 462 GRCREGKVEEARMLLDEMKXRGIKPD 487
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
GFM G +P+VV+ N + S G +E A +L+ M + + P++ TY +L+ G
Sbjct: 197 GFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKE 256
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ G + +YN LI+GYC ++E A S EM+ +GI +TY
Sbjct: 257 GRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTY 316
Query: 207 NTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N L A+ + PD+ Y I+G + G A + + + +
Sbjct: 317 NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLS 376
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
T T LI L + R+K A D+F ++ G++PDV+ +N MI G C G +
Sbjct: 377 KGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQ-GVSPDVIMFNAMIDGHCANGNVE 435
Query: 309 KANGLLLDMEETGLEPN 325
+A LL +M+ + P+
Sbjct: 436 RAFMLLKEMDRKSVPPD 452
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 135/299 (45%), Gaps = 61/299 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N L+ L EGR+ EA + K++ P+ IT+N L A A +L
Sbjct: 311 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDL 370
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDN 121
EM+++ G+ +P VT T++I L + M +DQG+ PDV+ N M D
Sbjct: 371 HNEMLSK-GI--EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDG 427
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+G +E A LL+ M ++ V P+ T+NTLM G C++
Sbjct: 428 HCANGNVERAFMLLKEMDRKSVPPDEVTFNTLM---------------------QGRCRE 466
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
VE+A L EM GI+ D +YNTL I G + G + +A
Sbjct: 467 GKVEEARMLLDEMKXRGIKPDHISYNTL-----------------ISGYGRRGDIKDAFX 509
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
V + + T+ T N LI LCK +A ++ M N G++PD TY +I G
Sbjct: 510 VRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKE-MVNKGISPDDSTYLSLIEG 567
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 36/229 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ +T+N LI G G A L ++ +P +T+ +L V A +L
Sbjct: 346 PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDL 405
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMM-----DQGMRPDVVTLNVMTDN 121
FE+++++ GV PDV+ +IDG C +G FM+ + + PD VT N +
Sbjct: 406 FEKILDQ-GV--SPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 462
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
++GK+EEA LL+ M R + P+ +YNTL+ G+ S G
Sbjct: 463 RCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPT 522
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ +YN LI CK++ + A L +EM+++GI D +TY +L + NV
Sbjct: 523 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNV 571
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 32/214 (14%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
+GK+++A + M PN +YNT++ G+ A KG D Y+
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYT 245
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y LI+G CK+ +E+A L +M+ G+ +A TYNTL IDG
Sbjct: 246 YGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL-----------------IDGY 288
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G + A + + ++ T N L+ L GR+ A D+ M+ G+ PD
Sbjct: 289 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE-MRKKGIIPD 347
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+TYNI+I+G+ + G ++A L +M G+EP
Sbjct: 348 AITYNILINGYSRCGNAKRAFDLHNEMLSKGIEP 381
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 162/374 (43%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + R+ P+++TFN+L+KGL G + +A + ++ P+ TF
Sbjct: 636 GNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTF 695
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ L A AL ++E V+ G+ K + TC+ +++ LCK+G +
Sbjct: 696 SILFDGYSSNDKADAALGVYETAVDS-GL--KMNAYTCSILLNALCKEGQIEKAEEILGR 752
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M +G+ P+ V N M D S+ G + A ++ M ++ + P+ YN L+ F
Sbjct: 753 EMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGD 812
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG V +YNILI GY + + L +EM G + +Y T
Sbjct: 813 MENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGT 872
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V P+ +Y IDG G + +A + +
Sbjct: 873 LINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDGCCSKGKIEDAFRFSEEMFKKG 932
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + T N LIDGL G+L A D+ + + GL PDV TYN +I G+ G Q+
Sbjct: 933 IELNLVTYNTLIDGLSMNGKLAEAEDML-LEISRKGLKPDVFTYNSLISGYRFAGNVQRC 991
Query: 311 NGLLLDMEETGLEP 324
L +M+ +G++P
Sbjct: 992 IALYEEMKTSGIKP 1005
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 171/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L P+++T+N+LI G C +G ++ ++ +++ +P++ITFNTL
Sbjct: 609 LFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLF 668
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+V A N+ EM ++ V PD T + + DG + +D G++
Sbjct: 669 KAGMVEDAENVLTEMKDQGFV---PDAFTFSILFDGYSSNDKADAALGVYETAVDSGLKM 725
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+ T +++ + L K+G++E+A +L + + + PN YNT++DG+
Sbjct: 726 NAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTMIDGYSRKGDLVGARMKI 785
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
A +G + D +YN LI +C+ ++E+A +M +G+ TYN L
Sbjct: 786 DAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRK 845
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N P+ Y T I+ L K +LEA V + + +
Sbjct: 846 YEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIY 905
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG C G+++ A+ F M G+ ++VTYN +I G G+ +A +LL++
Sbjct: 906 NMLIDGCCSKGKIEDAFR-FSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEIS 964
Query: 319 ETGLEPN 325
GL+P+
Sbjct: 965 RKGLKPD 971
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 150/345 (43%), Gaps = 54/345 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
IL S F P+ + I+ + + LF ++ P V +N L
Sbjct: 543 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQ 602
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVT 114
A LF+EM+ + P ++T +IDG CKDG F + + M+ P ++T
Sbjct: 603 MKDAEQLFDEMLARRLL---PSLITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLIT 659
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N + L K G +E+A +L M + P+ T++ L DG++ K
Sbjct: 660 FNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAV 719
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G + + Y+ +IL+N CK+ +E A + +++G+ + YNT+
Sbjct: 720 DSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNEVLYNTM----------- 768
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
IDG + G ++ A A+ NCLI C++G ++ A +
Sbjct: 769 ------IDGYSRKGDLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNK 822
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G++P V TYNI+I G+ ++ + K LL +ME+ G PN
Sbjct: 823 -MKLKGVSPSVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPN 866
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 155/354 (43%), Gaps = 61/354 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ + +N LI+ C G + A + K+ + P+V T+N L +L
Sbjct: 795 PDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDL 854
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDN 121
+EM + G + P+VV+ +I+ LCK ++ D+G+ P+V N++ D
Sbjct: 855 LKEMEDN-GTM--PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPNVRIYNMLIDG 911
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHD 167
GK+E+A E M ++ + N TYNTL+DG + KG + D
Sbjct: 912 CCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPD 971
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI 213
V++YN LI+GY NV+ ++L EM + GI+ TY+ L
Sbjct: 972 VFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCTKEGIELTKKIFGE 1031
Query: 214 NNVPPDSHVYT-----TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
++ PD VY + G F L+ + +IG K T N LI G K+
Sbjct: 1032 MSLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKT-----TYNSLILGQLKV 1086
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G+L + M+ + P+ TY+I++ G C+ + A +M+E GL
Sbjct: 1087 GKLCEVRSLIDE-MKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGL 1139
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 136/332 (40%), Gaps = 57/332 (17%)
Query: 29 LIKGLCTEGRIL-EAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICKP 85
L+ L E +++ EAA LF L P+ + L LV F +N F I +
Sbjct: 487 LLSVLLNESKMISEAADLFFALRNEGIFPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 546
Query: 86 D--------------VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
D V +++ GL M + P V NV+ D L K +M++A
Sbjct: 547 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDA 606
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
L + M+ R + P+ TYNTL+D GYCKD N E + +
Sbjct: 607 EQLFDEMLARRLLPSLITYNTLID---------------------GYCKDGNPEKSFKVR 645
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
M ++ I T+NTL M PD+ ++ DG N
Sbjct: 646 ERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSN 705
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
A+ V+ + + TC+ L++ LCK G+++ A +I M GL P+ V
Sbjct: 706 DKADAALGVYETAVDSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAK-GLVPNEVL 764
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN MI G+ ++G A + ME+ G++P+
Sbjct: 765 YNTMIDGYSRKGDLVGARMKIDAMEKQGMKPD 796
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F + N+VT+N+LI GL G++ EA + +++ P+V T+
Sbjct: 916 GKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTY 975
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------DQ 106
N+L + L+EEM G+ KP + T +I K+G + +
Sbjct: 976 NSLISGYRFAGNVQRCIALYEEMKTS-GI--KPTLKTYHLLISLCTKEGIELTKKIFGEM 1032
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR- 165
++PD++ N + + G M++A L + MI++ + + TYN+L+ G K C
Sbjct: 1033 SLQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 1092
Query: 166 -------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ +Y+I++ G+C+ ++ A REM +G+ D
Sbjct: 1093 RSLIDEMKAREMEPEADTYDIIVKGHCEMKDYMGAYVWYREMQEKGLLLD 1142
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 150/366 (40%), Gaps = 73/366 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + F + + PN++ F+SLI GLC G I +A
Sbjct: 277 GFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQA------------------- 317
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGMRP 110
+ EEMV + KP+V T T +IDGLCK G+ + +P
Sbjct: 318 -------FEMLEEMVRKGW---KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKP 367
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
+V T M + K+ K+ A LL M ++ + PNT TY L+DG
Sbjct: 368 NVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELM 427
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+G ++++YN +I+G CK +A L R L G+ AD TY L
Sbjct: 428 DLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQ 487
Query: 211 ------MAINN------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+AI + + PD H Y I + V E+ K+F + T ET
Sbjct: 488 TDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETY 547
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+I G C+ G + A FH M++ G PD +TY +I G C E + +A L M
Sbjct: 548 TSMICGYCRDGHISSAIKFFHK-MRDYGCKPDSITYGALISGLCNESKLDEACQLYETMI 606
Query: 319 ETGLEP 324
+ GL P
Sbjct: 607 DNGLSP 612
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 53/352 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVI 59
+G F +L ++ + PN+ T +LI GLC +G +A RLF KL PNV
Sbjct: 311 IGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVY 370
Query: 60 TFNTL-----ALVALNLFEEMV---NEFGVICKPDVVTCTNIIDGLCKDG---------- 101
T+ + LN E ++ E G++ P+ T T +IDG CK G
Sbjct: 371 TYTCMINGYCKEEKLNRAEMLLIRMKEQGLV--PNTNTYTCLIDGHCKAGNFGRAYELMD 428
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M +G P++ T N + D L K G+ EA LL ++ ++ + TY L+ F
Sbjct: 429 LMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQT 488
Query: 158 ------AWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
A +S+ G + D+++YN+LI +C+ + VE++ L E + G+
Sbjct: 489 DNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLL------- 541
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P YT+ I G ++G + A+K F + ++ C T LI GLC
Sbjct: 542 ----------PTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCN 591
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+L A ++ ++ N GL+P VT + + +CK+G A +L +E+
Sbjct: 592 ESKLDEACQLYETMIDN-GLSPCEVTRVTLAYEYCKQGDSATAMIILERLEK 642
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 43/265 (16%)
Query: 86 DVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
D TCT +I + GF+ + G+ P+++ + + + L K G +++A +L
Sbjct: 262 DNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEML 321
Query: 136 EVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR------------HDVYSYNILINGYCK 180
E M+++ PN T+ L+DG W K R +VY+Y +INGYCK
Sbjct: 322 EEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCK 381
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ + A L M +G+ P+++ YT IDG K G A
Sbjct: 382 EEKLNRAEMLLIRMKEQGL-----------------VPNTNTYTCLIDGHCKAGNFGRAY 424
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++ +G I T N +IDGLCK GR A+ + +++ GL D VTY I+I
Sbjct: 425 ELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKS-GLHADKVTYTILISE 483
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
FC++ +++A + M + GL+P+
Sbjct: 484 FCRQTDNKQALAIFSRMFKVGLQPD 508
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M + G+ LN + D G ++ A + + M+ R V P++ +Y ++ G+ +
Sbjct: 184 MQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGR 243
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS----EGIRADATTYNTLFMAINNVPP 218
D + +++ GY D + C M+S +G A Y ++ + + P
Sbjct: 244 ISDVDRWLKDMIERGYAVDN------ATCTLMISTFSEKGFVNRAFWYFKKWVQMG-LNP 296
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +++ I+GL K G + +A ++ + + T LIDGLCK G + A+ +F
Sbjct: 297 NLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLF 356
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+++ P+V TY MI+G+CKE + +A LL+ M+E GL PN
Sbjct: 357 LKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPN 403
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 125/296 (42%), Gaps = 56/296 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
GRA L+G+ FTPN+ T+N++I GLC +GR EA +L ++ + +T
Sbjct: 420 FGRAYELMDLMGK---EGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVT 476
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+ L ++EF C+ T+ L M G++PD+ T NV+
Sbjct: 477 YTIL-----------ISEF---CRQ-----TDNKQALAIFSRMFKVGLQPDMHTYNVLIA 517
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRH 166
+ K+EE+ L E + + P TY +++ G+ ++ K GC+
Sbjct: 518 TFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKP 577
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +Y LI+G C + +++A L M+ G+ T TL ++ Y
Sbjct: 578 DSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTL----------AYEYC-- 625
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
K G AM + + L I T N LI LC ++ +A FH L+
Sbjct: 626 -----KQGDSATAMIILERLEKK---LWIRTVNTLIRKLCSEKKVGVAALFFHKLL 673
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 163/375 (43%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + + + PN+ T N +I LC ++ EA +F+ ++ C P+ TF
Sbjct: 284 GNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATF 343
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
+L A ++E M++ + P+VV T++I K DG
Sbjct: 344 CSLIDGLGKQGRVDDAYRIYERMLDADQI---PNVVVYTSLIRNFFKCDRKEDGHKMYKE 400
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
MM G PD++ LN D + K G+ E+ L E + R P+T +Y+ L+
Sbjct: 401 MMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGF 460
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+A +GC D +YN +I+G+CK V A L EM + G TY +
Sbjct: 461 ARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGS 520
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + N + + +Y++ IDG K G V EA V +
Sbjct: 521 VVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKG 580
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T NCL+DGL K + A F M++ TP+ +TY I+I+G CK + KA
Sbjct: 581 LTPNVYTWNCLLDGLVKAEEINEALVCFQS-MKDLKCTPNQITYCILINGLCKVRKFNKA 639
Query: 311 NGLLLDMEETGLEPN 325
+M++ GL+PN
Sbjct: 640 FVFWQEMQKQGLKPN 654
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 153/358 (42%), Gaps = 60/358 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P +N++I G + G+ EA L ++ C P+V+ +N + AL +
Sbjct: 199 PCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRI 258
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FEEM + P++ T II LCK G M + G+ P+V T+N+M D
Sbjct: 259 FEEMKRD----AMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDR 314
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
L K K++EA + E M + +P+ T+ +L+DG +G D Y
Sbjct: 315 LCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLG--KQGRVDDAYRIYERMLDADQI 372
Query: 171 -----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------L 209
Y LI + K ED + +EM+ G D NT L
Sbjct: 373 PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRAL 432
Query: 210 FMAIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
F I PD+ Y+ I L K GF E +++ A+ + CVL N +IDG CK
Sbjct: 433 FEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCK 492
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A+ + M+ G P VVTY ++ G K + +A L + + G+E N
Sbjct: 493 SGKVNKAYQLLEE-MKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELN 549
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 155/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + R+L + PN+V + SLI+ R + +++K++ C P+++
Sbjct: 354 GRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLL 413
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT LFEE + G + PD + + +I L K GF
Sbjct: 414 NTYMDCVFKAGETEKGRALFEE-IKARGFL--PDTRSYSILIHSLVKAGFARETYELYYA 470
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M DQG D N + D K GK+ +A LLE M +P TY +++DG A
Sbjct: 471 MKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDR 530
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S G + Y+ LI+G+ K V++A + EM+ +G+ + T+N
Sbjct: 531 LDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNC 590
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L +DGL K + EA+ F ++ + KC T LI+GLCK+
Sbjct: 591 L-----------------LDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKV 633
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+ +F MQ GL P+ +TY MI G K G +A+ L +G P+
Sbjct: 634 RKFNKAF-VFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPD 689
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 129/317 (40%), Gaps = 54/317 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L I F P+ +++ LI L G E L+ + C + +
Sbjct: 424 GETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAY 483
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG 107
NT+ A L EEM + P VVT +++DGL K + +M+ +
Sbjct: 484 NTVIDGFCKSGKVNKAYQLLEEMKT---MGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEE 540
Query: 108 MRPDVVTLN-----VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ + + LN + D K G+++EA ++E M+Q+ + PN T+N L+DG +
Sbjct: 541 AKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEE 600
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C + +Y ILING CK R A +EM +G++ + TY
Sbjct: 601 INEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTA 660
Query: 209 LFMAI---NNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + NV PDS Y I+GL L+A ++F
Sbjct: 661 MISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720
Query: 251 CVLTIETCNCLIDGLCK 267
C + +TC L+D L K
Sbjct: 721 CSIHTKTCVALLDALHK 737
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 140/371 (37%), Gaps = 58/371 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F LL + F P + +LI L G LF ++ + NV TL
Sbjct: 45 AFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIR 104
Query: 67 V---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
V AL+L +EM N F D+V ID K G M
Sbjct: 105 VFSREGRVDAALSLLDEMKSNTFDA----DIVLYNVCIDCFGKVGKVDMAWKFFHEMKAN 160
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
G+ PD VT M L K +++EA + E M Q P YNT++ G+
Sbjct: 161 GLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220
Query: 159 ------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+KGC V +YN ++ K + A+ + EM + + + TYN +
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGM 279
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + P+ ID L K + EA +F + C
Sbjct: 280 LCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPD 339
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T LIDGL K GR+ A+ I+ ++ + P+VV Y +I F K + + + +
Sbjct: 340 GATFCSLIDGLGKQGRVDDAYRIYERML-DADQIPNVVVYTSLIRNFFKCDRKEDGHKMY 398
Query: 315 LDMEETGLEPN 325
+M +G P+
Sbjct: 399 KEMMRSGCSPD 409
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 56/332 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+LG + ++ F P T L+ +++EA L + + F P + TL AL
Sbjct: 13 ILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALS 72
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
+ + M+ F M + G +V L + S++G+
Sbjct: 73 EVGESDRMLALFNQ---------------------MQELGYEVNVHLLTTLIRVFSREGR 111
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNI 173
++ A LL+ M + + YN +D F AW + G D +Y
Sbjct: 112 VDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTS 171
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
++ CK +++AV + +M N P ++ Y T I G
Sbjct: 172 MMGVLCKANRLDEAVEIFEQMEQ-----------------NRQVPCAYAYNTMIMGYGSA 214
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G EA + C+ ++ NC++ L K G+ A IF + ++ P++ T
Sbjct: 215 GKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA--MPNLPT 272
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YNI+I CK G + A + M+E GL PN
Sbjct: 273 YNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPN 304
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 39/168 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR ++++ ++ TPN+ T+N L+ GL I EA F+ + C PN IT
Sbjct: 563 VGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQIT 622
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
+ L I+GLCK F M QG++P
Sbjct: 623 YCIL-----------------------------INGLCKVRKFNKAFVFWQEMQKQGLKP 653
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
+ +T M L+K G + +A+ L E P++ +YN +++G +
Sbjct: 654 NTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLS 701
>gi|224082750|ref|XP_002306825.1| predicted protein [Populus trichocarpa]
gi|222856274|gb|EEE93821.1| predicted protein [Populus trichocarpa]
Length = 205
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 101/178 (56%), Gaps = 8/178 (4%)
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
C DG + +G R + +++ +I G C D + +AV L ++M G D
Sbjct: 21 CDVKRASDGLLVFGRGFRPNAVTFSSMIKGLCVDDKIGEAVGLFKKMGLFGCWPDV---- 76
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ ++++ P+ Y Y+DGL KN EA+ +F ++ N K +IE NCLI+ LCK
Sbjct: 77 ---LRLHDLVPNVTTYNVYLDGLCKNNCFSEAVSLFHSLENCKFESSIEILNCLINCLCK 133
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IG+L AWD+F+ M N GL P VVTY IMIHG C EGQ ++A LL+++E+ PN
Sbjct: 134 IGKLATAWDLFYR-MPNKGLKPAVVTYAIMIHGLCTEGQMERAKDLLVELEDKSCTPN 190
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 34/173 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RAS G ++ GR F PN VTF+S+IKGLC + +I EA LFKK+ +F C P+V+ +
Sbjct: 25 RASDGLLVFGR----GFRPNAVTFSSMIKGLCVDDKIGEAVGLFKKMGLFGCWPDVLRLH 80
Query: 63 TL------------ALVALNLFEEMVNEFGVI--CK----PDVVTCTNIIDGLCKDG--- 101
L L N F E V+ F + CK +++ C +I+ LCK G
Sbjct: 81 DLVPNVTTYNVYLDGLCKNNCFSEAVSLFHSLENCKFESSIEILNC--LINCLCKIGKLA 138
Query: 102 -------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
M ++G++P VVT +M L +G+ME A LL + + PN
Sbjct: 139 TAWDLFYRMPNKGLKPAVVTYAIMIHGLCTEGQMERAKDLLVELEDKSCTPNV 191
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 56/231 (24%)
Query: 86 DVVTCTNIIDGLC-----KDGFMM-DQGMRPDVVTLNVMTDNLSKDGKMEEA-------- 131
D +T +I+ C DG ++ +G RP+ VT + M L D K+ EA
Sbjct: 9 DFITLNTLINCFCDVKRASDGLLVFGRGFRPNAVTFSSMIKGLCVDDKIGEAVGLFKKMG 68
Query: 132 --NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
C +V+ D+ PN TYN +DG CK+ +AVS
Sbjct: 69 LFGCWPDVLRLHDLVPNVTTYNVYLDGL---------------------CKNNCFSEAVS 107
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L + + + N L I+ L K G + A +F + N
Sbjct: 108 LFHSLENCKFESSIEILNCL-----------------INCLCKIGKLATAWDLFYRMPNK 150
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ T +I GLC G+++ A D+ + +++ TP+VV + +IH
Sbjct: 151 GLKPAVVTYAIMIHGLCTEGQMERAKDLL-VELEDKSCTPNVVR-SPLIHS 199
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
+G+ + + L R+ P +VT+ +I GLCTEG++ A L +L C PNV+
Sbjct: 134 IGKLATAWDLFYRMPNKGLKPAVVTYAIMIHGLCTEGQMERAKDLLVELEDKSCTPNVV 192
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 63/354 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
FTP++VT+NSLI G G + E +F+++ CDP+VIT+N L + FE M
Sbjct: 87 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNAL-INCFCKFERMPKA 145
Query: 79 FGVI-------CKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F + KP+VVT + ID CK+G + + + P+ T + D
Sbjct: 146 FEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA 205
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K G + EA L+E ++Q + N TY L+DG A + G +
Sbjct: 206 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 265
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------ 215
+Y L++G+ K + +E A + +EM + I+ D Y T+ + N
Sbjct: 266 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 325
Query: 216 ------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+ ++ +YTT +D +K+G EA+ + + + L+DGLCK
Sbjct: 326 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD------------LVDGLCKNN 373
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
++A +F ++ + G+ PD + Y +I G K G Q+A L M E G+E
Sbjct: 374 CFEVAKKLFDEML-DKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGME 426
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 42/266 (15%)
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
K V T +ID LCK+G M + G PD+VT N + D K G ++E C
Sbjct: 53 KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECIC 112
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYC 179
+ E M D +P+ TYN L++ F + + G + +V +Y+ I+ +C
Sbjct: 113 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 172
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+ +++A+ +M R A T P+ YT+ ID K G + EA
Sbjct: 173 KEGMLQEAIKFFVDM-----RRVALT------------PNEFTYTSLIDANCKAGNLAEA 215
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+K+ I L + T L+DGLC+ GR+K A ++F ++ N G+ P+ TY ++H
Sbjct: 216 LKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML-NAGVAPNQETYTALVH 274
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF K + + A +L +M+E ++P+
Sbjct: 275 GFIKAKEMEYAKDILKEMKEKCIKPD 300
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 43/325 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L+ IL + N+VT+ +L+ GLC EGR+ EA +F+ + PN T+
Sbjct: 210 GNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETY 269
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
L G I ++ +I+ M ++ ++PD++ +
Sbjct: 270 TALV-------------HGFIKAKEMEYAKDILKE------MKEKCIKPDLLLYGTILWG 310
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI----LING 177
L + ++EEA L+ + + +N N Y TLMD A++ G + + L++G
Sbjct: 311 LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMD--AYFKSGQATEALTLLEEMLDLVDG 368
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK+ E A L EML +G+ PD YT IDG K+G +
Sbjct: 369 LCKNNCFEVAKKLFDEMLDKGMM-----------------PDKIAYTALIDGNMKHGNLQ 411
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
EA+ + + L + LI GL G+++ A ++ ++ G+ PD V Y +
Sbjct: 412 EALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMI-GKGVLPDEVVYMCL 470
Query: 298 IHGFCKEGQHQKANGLLLDMEETGL 322
I + G+ +A L +M + G+
Sbjct: 471 IKKYYALGKVDEALELQNEMAKRGM 495
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 60/340 (17%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------NLFEEMV 76
N ++ +C +G + E L +KL F C+P+++++N + L L L EMV
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAV-LKGLCMAKRWDDVEELMVEMV 240
Query: 77 NEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ C PD+ IIDG+CKDG M G++P+VV N +
Sbjct: 241 RVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 300
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L + EEA LL M Q D + T+N L+D F GC
Sbjct: 301 KGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI 360
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV +Y +ING+CK+ V++AV L + M + G + P++ YT
Sbjct: 361 PDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCK-----------------PNTISYTI 403
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+ GL + ++A ++ S + C+ T N LI+ +CK G + A ++ ++ N
Sbjct: 404 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVN- 462
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD+++Y+ +I G K G+ ++A LL M G+ PN
Sbjct: 463 GCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 502
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 159/341 (46%), Gaps = 54/341 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+L R+ PN+V +N+++KGLC+ R EA L ++ C + +TFN L
Sbjct: 280 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 339
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
LV + L E+M+ E G C PDV+T T +I+G CK+G M G +P
Sbjct: 340 QNGLVDRVIELLEQML-EHG--CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP 396
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----GFAWWS---- 161
+ ++ ++ L + + +A L+ MIQ+ PN T+NTL++ G A +
Sbjct: 397 NTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELL 456
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
GC D+ SY+ +I+G K E+A+ L M+++GI
Sbjct: 457 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGIT---------------- 500
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P++ +Y++ L + G + +++F +I + N +I LCK A D
Sbjct: 501 -PNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAID 559
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
F ++ N G P+ TY I+I G EG ++A LL ++
Sbjct: 560 FFAYMVSN-GCMPNESTYTILIRGLASEGLVREAQDLLSEL 599
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 49/274 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++L P+++T+ ++I G C EG + EA L K ++ C PN I++ T+ L L
Sbjct: 350 LLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISY-TIVLKGL 408
Query: 70 NLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
E V+ +I C P+ VT +I+ +CK G M+ G PD+
Sbjct: 409 CRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDL 468
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------- 162
++ + + D L K GK EEA LL VMI + + PNT Y+++ + +
Sbjct: 469 ISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDS 528
Query: 163 ----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
R D YN +I+ CK + A+ M+S G P
Sbjct: 529 IQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCM-----------------P 571
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+ YT I GL G V EA + S + + + V
Sbjct: 572 NESTYTILIRGLASEGLVREAQDLLSELCSRRAV 605
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 47/322 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCC--DPNVITFNTLALVALNLFEEMVNE 78
PN T+ +++ LC G I +A + ++ + C P + A F V
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLS 123
V+ C D C ++ +C+ G +D+G+ PD+V+ N + L
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQG-CVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
+ ++ L+ M++ + L GC D+ Y +I+G CKD +
Sbjct: 225 MAKRWDDVEELMVEMVR--------VHEALSQ---MPEHGCTPDLRMYATIIDGICKDGH 273
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
E A + M S G++ + YNT+ + GL EA +
Sbjct: 274 HEVANDILSRMPSYGLKPNVVCYNTV-----------------LKGLCSAERWEEAEDLL 316
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + C L T N L+D C+ G + ++ ++++ G PDV+TY +I+GFCK
Sbjct: 317 AEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH-GCIPDVITYTTVINGFCK 375
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
EG +A LL +M G +PN
Sbjct: 376 EGLVDEAVMLLKNMSACGCKPN 397
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 151/345 (43%), Gaps = 55/345 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFEEM 75
F LIK G +A F + F C P+V T+N + L+AL ++ M
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKD 125
+ + C P+V T + +IDGLCK G + D +G+ PD T V+ L +
Sbjct: 188 MK---LNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRS 244
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSY 171
++++A L + M V P+ T N L++GF + G DV Y
Sbjct: 245 KRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGY 304
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
+ LI G + + ED L R+M+ + ++ D Y + M
Sbjct: 305 SCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTE 364
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ V PD+ Y I G G + EA + I H C ++T + LI G+C+ G +
Sbjct: 365 SGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRD 424
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
A +IF+ M+ G P VT+N +I G CK GQ +KA+ L ME
Sbjct: 425 AQEIFNE-MEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 167/404 (41%), Gaps = 103/404 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNL 71
PN+ TF+ LI GLC G + +A LF ++ P+ T+ + A L
Sbjct: 194 PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRL 253
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC----------------KDGFMMD---------- 105
F++M + GV PD VTC +++G C KDG+++D
Sbjct: 254 FDKMKDS-GV--GPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRG 310
Query: 106 -------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
++PDV +M L++ GK+ +A LL M + V P+
Sbjct: 311 LFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPD 370
Query: 147 TCTYNTLMDGF----------AWWSKGCRHD----VYSYNILINGYCKDRNVEDAVSLCR 192
T YN L+ GF + + RHD V +Y+ILI+G C++ DA +
Sbjct: 371 TVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFN 430
Query: 193 EMLSEGIRADATTYN----------------------------TLFMAINNVPP---DSH 221
EM G A T+N +LF+ ++ P DS
Sbjct: 431 EMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSA 490
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++ L +G + +A ++ + + I T N L++G CK+G A+ +F
Sbjct: 491 SLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFRE- 549
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ GL+PD VTY +I+G + + + A + ME+ G P+
Sbjct: 550 MQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPD 593
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 141/337 (41%), Gaps = 51/337 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL + S P+ V +N LIKG C G + EA L +++ C PNV T+
Sbjct: 350 GKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTY 409
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
N L A +F EM + G C P VT ++IDGLCK G +
Sbjct: 410 SILISGMCRNGLTRDAQEIFNEM-EKLG--CYPSAVTFNSLIDGLCKTGQLEKAHLLFYK 466
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWS 161
M+ G P + LS+ + L+ M+++ D Y LM
Sbjct: 467 MEIGRNPSLFL------RLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQ---LAD 517
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G +Y+YNIL+NG+CK N A L REM +G+ D TY TL
Sbjct: 518 SGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTL------------ 565
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
I+GL + +A KVF + + C ++ +C+ L A+ ++
Sbjct: 566 -----INGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKY 620
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
++N D I G+ ++ + +KA LL+M+
Sbjct: 621 LRNIRSQEDEAIK--AIEGYFEKQEVEKAVRGLLEMD 655
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 138/358 (38%), Gaps = 61/358 (17%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE- 74
CF PN+ T++ LI G+C G +A +F ++ C P+ +TFN+L L E+
Sbjct: 402 CF-PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKA 460
Query: 75 --MVNEFGVICKP--------------DVVTCTNIIDGLCKDGF----------MMDQGM 108
+ + + P D + +++ LC G + D G
Sbjct: 461 HLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGD 520
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------ 162
P + T N++ + K G A L M + ++P+T TY TL++G + +
Sbjct: 521 APGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYK 580
Query: 163 --------GCRHDVYSYNILINGYCKDRNVEDAVSL-------CREMLSEGIRA------ 201
GC D Y ++ C+ + A SL R E I+A
Sbjct: 581 VFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFE 640
Query: 202 ----DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
+ L M D Y ++ GL + V EA+K+F + +K V+T
Sbjct: 641 KQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLILEEYKVVITPPC 700
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
C LI L K G L A D+F ++ L V I+ ++G+ K + L
Sbjct: 701 CVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKLVRRKGEMGKDRAIYL 758
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 40/243 (16%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G M D PDV T N+ +L+V+IQ++ T T M
Sbjct: 150 GSMRDFDCTPDVYTYNM----------------ILDVLIQKNFLLLALTVYTRM-----M 188
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY-------------- 206
C +V +++ILI+G CK NV+DA+ L EM GI DA TY
Sbjct: 189 KLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVD 248
Query: 207 --NTLF--MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
LF M + V PD ++G V EA + VL + +CLI
Sbjct: 249 DAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLI 308
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GL + R + ++ ++++ + PDV Y IM+ G + G+ + A LL +M E+G+
Sbjct: 309 RGLFRAKRYEDVQLLYRKMIED-NVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV 367
Query: 323 EPN 325
P+
Sbjct: 368 VPD 370
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 160/352 (45%), Gaps = 57/352 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEM 75
++ +++ L G + +A +F+ + C P+++T+N L AL+LF+ M
Sbjct: 12 AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKD 125
E V +PD T +I GLC G M D+ + +V T + + +L K+
Sbjct: 72 KREKRV--EPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKE 129
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
K EE+ +LE M+ NP+ +N +M GFA G + D SY
Sbjct: 130 AKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSY 189
Query: 172 NILINGYCKDRNVEDAVSLCREML--SEGIRADATTYNTLF------------------M 211
+ILI+G K +++++ + EM + G + T++TL M
Sbjct: 190 HILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 249
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC-NCLIDGLCKIGR 270
P+ + YTT I GL + V++A ++F + C+ N LI G CK G
Sbjct: 250 LEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM-TQACIPPDAVAYNSLIAGYCKRGS 308
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ A ++ + GL P +VT+N +I GFCK G+ +AN L+ +M GL
Sbjct: 309 MDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 360
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 147/335 (43%), Gaps = 57/335 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P+ T+N+LI GLC+ G A +L ++ NV T++++ +LV + +
Sbjct: 79 PDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKV 138
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EEM+ C PDV ++ G + M++ G +PD V+ +++
Sbjct: 139 LEEMM---AAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHG 195
Query: 122 LSKDGKMEEANCLLEVMIQRDVN--PNTCTYNTLMDGF--------------AWWSKGCR 165
L+K GK++E+ +L M R PN T++TL+ G + GC+
Sbjct: 196 LAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCK 255
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ Y+Y LI G C+ V A L +M I PPD+ Y +
Sbjct: 256 PNKYTYTTLIAGLCRAEKVIQARELFEKMTQACI-----------------PPDAVAYNS 298
Query: 226 YIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I G K G + EA K++ + G TI T N LIDG CK+G+L A ++ M
Sbjct: 299 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAE-MGT 357
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
GL D TY I+I G + + +A + M E
Sbjct: 358 KGLAADTCTYRILIAGLSRATKLDEALEVYKQMRE 392
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 160/367 (43%), Gaps = 58/367 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL + N+ T++S+IK L E + E+ ++ +++ C+P+V F
Sbjct: 95 GNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAF 154
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
N + A +++ MV E G KPD V+ +I GL K G
Sbjct: 155 NGVMQGFARSNNMEKAREVYQHMV-ESGY--KPDNVSYHILIHGLAKIGKLDESLKILSE 211
Query: 102 -FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---- 156
M G P+V+T + + L + G++E+A + M++ PN TY TL+ G
Sbjct: 212 MAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRA 271
Query: 157 ---------FAWWSKGC-RHDVYSYNILINGYCKDRNVEDAVSLCREML-SEGIRADATT 205
F ++ C D +YN LI GYCK ++++A L REM G++ T
Sbjct: 272 EKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVT 331
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+NTL M + D+ Y I GL + + EA++V+ +
Sbjct: 332 FNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMR 391
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
K +L +C + GLCK G + A+ +F ++ G P+ T+ I+ K G+
Sbjct: 392 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS-GAVPNPETFRILSESLIKLGRV 450
Query: 308 QKANGLL 314
+ A L+
Sbjct: 451 EDAQKLM 457
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 119/281 (42%), Gaps = 61/281 (21%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ PN++TF++LI GLC G + +A +F + C PN T+ TL + A
Sbjct: 219 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAR 278
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----------QGMRPDVVTLNVM 118
LFE+M PD V ++I G CK G M + G++P +VT N +
Sbjct: 279 ELFEKMTQ---ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTL 335
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
D K GK+ AN L+ M + + +TCT Y ILI G
Sbjct: 336 IDGFCKLGKLGRANELVAEMGTKGLAADTCT---------------------YRILIAGL 374
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+ +++A+ + ++M + D P S V +++ GL K G + +
Sbjct: 375 SRATKLDEALEVYKQMREKKFLLD---------------PVSCV--SFVGGLCKTGNIDQ 417
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
A VF A V ET L + L K+GR++ A +
Sbjct: 418 AYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 39/235 (16%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMI-QRDVNPNTCTYNTLMDGF--AWWSKGCRH 166
P +VT NV+ ++ G+ +A L + M ++ V P+ TYNTL+ G + ++G R
Sbjct: 43 PSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARK 102
Query: 167 ------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FM 211
+V++Y+ +I K+ E++ + EM++ G D +N + F
Sbjct: 103 LLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFA 162
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
NN+ VY ++ YK V + + LI GL KIG+L
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNV--------------------SYHILIHGLAKIGKL 202
Query: 272 KIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ I M M+ G P+V+T++ +IHG C+ G+ +KA + M E G +PN
Sbjct: 203 DESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 257
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y + L K G + +A++VF + + CV ++ T N LI+ C G A D+F +
Sbjct: 12 AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + PD TYN +I G C G + A LL +M + + N
Sbjct: 72 KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAAN 115
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 54/190 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL---- 64
L ++ +C P+ V +NSLI G C G + EA +L+++++ P ++TFNTL
Sbjct: 280 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 339
Query: 65 -ALVALNLFEEMVNEFGV----------------------------ICKP--------DV 87
L L E+V E G + K D
Sbjct: 340 CKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDP 399
Query: 88 VTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
V+C + + GLCK G +DQ G P+ T +++++L K G++E+A L+E
Sbjct: 400 VSCVSFVGGLCKTG-NIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458
Query: 137 VMIQRDVNPN 146
RD+
Sbjct: 459 PAKARDITAQ 468
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+ KC + + + ++ L K G L A ++F M++ P +VTYN++I+ C G
Sbjct: 1 MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFET-MKSESCVPSLVTYNVLINSRCNAG 59
Query: 306 QHQKANGLLLDME-ETGLEPN 325
+ KA L M+ E +EP+
Sbjct: 60 EFGKALDLFQSMKREKRVEPD 80
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 161/399 (40%), Gaps = 101/399 (25%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEM 75
F +L+ + GR +A + F +++ F P +NT+ L+AL L+ M
Sbjct: 139 AFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRM 198
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V C P+ T ++DGLCK G M+D+G+ P+V V+ +L
Sbjct: 199 V---AAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNA 255
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLM------------------------------- 154
GK++EA LL M + P+ TYN +
Sbjct: 256 GKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGY 315
Query: 155 --------------DGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
+GF ++ + DV Y I+I G + +EDA+S M
Sbjct: 316 SCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKK 375
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
+G D YNT+ M NN+ DS T I GL K G V E
Sbjct: 376 KGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDE 435
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM--QNPGL--------- 287
AM++F +G H C T+ T N LIDG + GRL+ A +FH + NP L
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGAN 495
Query: 288 -TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D + ++H C+ GQ KA LL + ++G+ P+
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 166/415 (40%), Gaps = 97/415 (23%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
L R++ + PN T+N L+ GLC +G +A ++F ++ PNV + L
Sbjct: 191 ALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLS 250
Query: 65 ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK--------------------- 99
+L +E V G + C PD VT + GLCK
Sbjct: 251 SLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFAL 310
Query: 100 -------------------DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+GF M+++ + PDVV +M ++ G++E+A L
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370
Query: 136 EVMIQRDVNPNTCTYNTLMD-----GFAWWSKGCRHDVYSYN---------ILINGYCKD 181
+VM ++ P+T YNT++ G + R ++ N I+I G CK
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP----- 218
V++A+ + EM G TYN L M + N P
Sbjct: 431 GLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRL 490
Query: 219 --------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
DS + + ++G VL+A K+ +I + V + T N LI+GLCK
Sbjct: 491 TLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARN 550
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A +F L Q G++PD +TY +I G + + A L ++ ++G P+
Sbjct: 551 LDGAVRLFKEL-QLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPS 604
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 128/322 (39%), Gaps = 66/322 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R GF +L +P++V + +I+G GRI +A + P+ +N
Sbjct: 327 RFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYN 386
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ V A L EM+ V+ D T T +I GLCK G M
Sbjct: 387 TVLKVLCDHGDLERAHTLRSEMLQNNLVL---DSTTQTIMICGLCKRGLVDEAMQIFDEM 443
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ----------------------- 140
+ G P V+T N + D ++G++EEA L M
Sbjct: 444 GEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESL 503
Query: 141 RDVNPNTCTYNTLMDGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
R + + C ++ + G DV +YN LING CK RN++ AV L +E+
Sbjct: 504 RKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQL 563
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+GI D TY TL IDGL + +AM +F I ++
Sbjct: 564 KGISPDEITYGTL-----------------IDGLLRAHRENDAMMLFQNILQSGSSPSLS 606
Query: 257 TCNCLIDGLCKIGRLKIAWDIF 278
N ++ LC++ +L A +++
Sbjct: 607 IYNSMMRSLCRMKKLSQAINLW 628
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 140/340 (41%), Gaps = 48/340 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------- 65
P ++T+N+LI G EGR+ EA LF K+ + +P++ TL
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKMEM-GNNPSLFLRLTLGANQVCDSESLRKLVH 508
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MMDQG 107
L A L +++ GV+ PDVVT +I+GLCK DG + +G
Sbjct: 509 DMCQSGQVLKAYKLLRSIIDS-GVV--PDVVTYNTLINGLCKARNLDGAVRLFKELQLKG 565
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
+ PD +T + D L + + +A L + ++Q +P+ YN++M K +
Sbjct: 566 ISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAI 625
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREM----LSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ L Y E + +E+ L +G+R + + + I++ P Y
Sbjct: 626 NLWLDYLPKKYNFPVESEVLANAHKEIEDGSLDDGVR-ELIKIDQEYGYISSNP-----Y 679
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ++ GL + +A+++F + +T C LI+ LC L A DI +
Sbjct: 680 TIWLIGLCQVRRTDDALRIFHTLQEFGIDITPACCALLINYLCWDRNLNAAVDIMLYALS 739
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ V N ++ C + Q A L M G +
Sbjct: 740 KSIILSQPVG-NRLLRWLCICYRRQDAQALAWRMHLVGYD 778
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 56/332 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G + +L +P +VT+ +++ G C GRI +A L ++L P+ ++TL
Sbjct: 103 GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 162
Query: 65 ALVALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
L + EE F + DV+ T+ I GLCK G M++ G PD
Sbjct: 163 GLCKHDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 222
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT--CTYNTLMDGFAWWSKGCRHDVYS 170
V+ NV+ +L KD ++ EA L++ ++R P CT
Sbjct: 223 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCT--------------------- 261
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
+L++G CK R VE+A + ML G RA P Y+ IDGL
Sbjct: 262 --VLVDGLCKSRRVEEACVILERMLEAGDRA----------------PSVVTYSAVIDGL 303
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K + +A V + CV + T +ID CK+GRL A ++F M G D
Sbjct: 304 CKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQR-MHERGCASD 362
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
VV YNI+I G+C+ + +A ++ +M G+
Sbjct: 363 VVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 152/348 (43%), Gaps = 53/348 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF-------- 61
LLG + + TP +VTF SLI+ LC +A ++F ++ P+ +
Sbjct: 1 LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60
Query: 62 --NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMR 109
N L L A + FE+MV C PD VT T ++ L K G M+ +G
Sbjct: 61 KINKLDLAA-SYFEQMVQSG---CLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHS 116
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
P++VT + + K G++++A L+ + +P+ Y+TL+DG +
Sbjct: 117 PELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEAREL 176
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
G DV Y I+G CK +++A ++ +M+ G D +YN +
Sbjct: 177 FEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVI-------- 228
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
I L K+ V EA ++ KC+ + C L+DGLCK R++ A I
Sbjct: 229 ---------IYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVI 279
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ P VVTY+ +I G CK + A +L M G P+
Sbjct: 280 LERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPD 327
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 64/262 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-------------- 47
GR L+ R+ + +P+ +++LI GLC R EA LF+
Sbjct: 133 GRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAGDVQDVIVYTS 192
Query: 48 -------------------KLNVFCCDPNVITFNTL--ALVALNLFEE----MVNEFGVI 82
K+ C P+ +++N + +L N E M
Sbjct: 193 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERK 252
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMR-PDVVTLNVMTDNLSKDGKMEEA 131
C P V CT ++DGLCK M++ G R P VVT + + D L K ++++A
Sbjct: 253 CMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDA 312
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
+L+ M + P+ TY ++D F +GC DV +YNILI G
Sbjct: 313 YIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG 372
Query: 178 YCKDRNVEDAVSLCREMLSEGI 199
YC+ V++A+++ EM GI
Sbjct: 373 YCRAAKVDEAIAMIEEMAGRGI 394
>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 603
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 46/299 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+N+LIKG+C EGR+ E R K L + P+VI++ T+ L +L+ +
Sbjct: 293 PNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISY-TIVLHSLSSGGRWTDAMK 351
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
++ M+ +G +VVT N + + L + G + +A +LE++ +
Sbjct: 352 LLAS------------------MLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIXK 393
Query: 141 RDVNPNTCTYNTLMDGFA---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLC 191
PN+ +YN + GF S+GC D+ +YNIL+ CKDR V+DAV +
Sbjct: 394 HVCTPNSISYNPSIGGFCNEKSXYLEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVEIL 453
Query: 192 REMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+++ +G++ D TY+ + IDGL K G A+++
Sbjct: 454 KQLSFKGLKPDVITYSII-----------------IDGLLKVGKTDLALELLEEACTKGL 496
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ T ++ G+ + G++ A IFH L + G+ P+ YN++I G CK Q +
Sbjct: 497 KPNLITFTSVVGGISRKGKVHEAIKIFHFL-EGLGIRPNAFAYNLIIMGLCKTQQTSRG 554
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 144/331 (43%), Gaps = 60/331 (18%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL-------NLFEEMVNEF 79
N LI G C G + EA R+ ++V PN I ++T+ L +L E + +
Sbjct: 197 NVLIGGYCXSGEVEEALRVLDCMSV---SPNGINYDTI-LRSLCDRCKLKQGMEVLDRQL 252
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
+ C PDVVT T +ID CKD M+ + +P+VVT N + + +G+++
Sbjct: 253 QIKCYPDVVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYNALIKGICNEGRLD 312
Query: 130 EANCLLEVMIQRDVNPNTCTY----NTLMDGFAWWS----------KGCRHDVYSYNILI 175
E L+ + P+ +Y ++L G W KGC +V ++N LI
Sbjct: 313 EVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLI 372
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV-PPDSHVYTTYIDGLYKNG 234
N C+ +G+ A +N L M +V P+S Y I G
Sbjct: 373 NFLCQ----------------KGLLGKA--FNVLEMIXKHVCTPNSISYNPSI-----GG 409
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
F E + + C I T N L+ LCK ++ A +I L GL PDV+TY
Sbjct: 410 FCNEKSXYLEIMVSRGCYPDIVTYNILLAALCKDRKVDDAVEILKQL-SFKGLKPDVITY 468
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+I G K G+ A LL + GL+PN
Sbjct: 469 SIIIDGLLKVGKTDLALELLEEACTKGLKPN 499
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 155/339 (45%), Gaps = 59/339 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA---------LN 70
+PN + ++++++ LC ++ + + + C P+V+T+ L A +
Sbjct: 222 SPNGINYDTILRSLCDRCKLKQGMEVLDRQLQIKCYPDVVTYTELIDAACKDSRVGQAMK 281
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTD 120
L EMV++ CKP+VVT +I G+C +G + + G +PDV++ ++
Sbjct: 282 LLIEMVSKE---CKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIVLH 338
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFAW------WSKGCRH 166
+LS G+ +A LL M+ + + N T+NTL++ G A+ C
Sbjct: 339 SLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIXKHVCTP 398
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN I G+C +++ + M+S G D TYN L A
Sbjct: 399 NSISYNPSIGGFCNEKSXYLEI-----MVSRGCYPDIVTYNILLAA-------------- 439
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
L K+ V +A+++ + + T + +IDGL K+G+ +A ++ G
Sbjct: 440 ---LCKDRKVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTK-G 495
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L P+++T+ ++ G ++G+ +A + +E G+ PN
Sbjct: 496 LKPNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPN 534
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 43/267 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LL +L + N+VTFN+LI LC +G + +A + + + C PN I++
Sbjct: 344 GRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVLEMIXKHVCTPNSISY 403
Query: 62 NTLALVALN----LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
N N E MV+ C PD+VT ++ LCKD + D +G
Sbjct: 404 NPSIGGFCNEKSXYLEIMVSRG---CYPDIVTYNILLAALCKDRKVDDAVEILKQLSFKG 460
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
++PDV+T +++ D L K GK + A LLE + + PN T+ +++ G + K
Sbjct: 461 LKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHEAI 520
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G R + ++YN++I G CK + S G + TYN L I
Sbjct: 521 KIFHFLEGLGIRPNAFAYNLIIMGLCKTQQT-----------SRGCKPTEATYNILVKGI 569
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ + + LY G V +++
Sbjct: 570 TSEGXPKEASKLWSE-LYSKGPVKKSL 595
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 50/240 (20%)
Query: 122 LSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
L K+G+++EA+ LE M + ++ P L+ F + G
Sbjct: 123 LIKNGELDEASRFLEYMTNKGNIMPCVIACTALISEFCKIGRTKNATRIMGILEESGAVI 182
Query: 167 DVYSY---------NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-- 215
D+ Y N+LI GYC VE+A+ + M + + Y+T+ ++ +
Sbjct: 183 DITIYNFFCLPKKNNVLIGGYCXSGEVEEALRVLDCM---SVSPNGINYDTILRSLCDRC 239
Query: 216 ----------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
PD YT ID K+ V +AMK+ + + +C + T N
Sbjct: 240 KLKQGMEVLDRQLQIKCYPDVVTYTELIDAACKDSRVGQAMKLLIEMVSKECKPNVVTYN 299
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LI G+C GRL ++ L P G PDV++Y I++H G+ A LL M
Sbjct: 300 ALIKGICNEGRLD---EVIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMKLLASM 356
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 30/134 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL PN++TF S++ G+ +G++ EA ++F L PN
Sbjct: 478 VGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPNAFA 537
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N II GLCK +G +P T N++
Sbjct: 538 YNL-----------------------------IIMGLCKTQ-QTSRGCKPTEATYNILVK 567
Query: 121 NLSKDGKMEEANCL 134
++ +G +EA+ L
Sbjct: 568 GITSEGXPKEASKL 581
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 159/348 (45%), Gaps = 53/348 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L+ ++ F P+ T++ +I LC ++ +A LF+++ + P+V T
Sbjct: 435 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 494
Query: 61 FNTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK--------DGF- 102
+ L L+ A LFEEM + V C P VVT T +I K D F
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRS---VGCSPTVVTYTALIHAYLKAKQVPQANDIFH 551
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+D G RP+ VT + D L K G + +A + +I + ++ Y D
Sbjct: 552 RMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCED------ 605
Query: 162 KGCRH----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
RH +V +Y L++G CK V+ A L MLS G
Sbjct: 606 ---RHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCE----------------- 645
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ VY IDG K G + A +VF + + ++ T LID + K GRL +A +
Sbjct: 646 PNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 705
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++++ TP+VVTY MI G C+ G+ +KA LL MEE G PN
Sbjct: 706 LSQMLKD-SCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 752
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 157/386 (40%), Gaps = 71/386 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + PN+VT+ +L+ G + ++ R+ + C+PN FN+L
Sbjct: 298 FLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYC 357
Query: 66 -----LVALNLFEEMV-----------NEF-GVICKPDVVTCTNIIDGLCK-DGFMMDQG 107
A L M N F G IC + + +++D K G M+
Sbjct: 358 NEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAAN 417
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ V + L GK ++A L++ M+++ P+T TY+ ++ +K
Sbjct: 418 CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 477
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---F 210
G DVY+Y ILI+ +CK +E A L EM S G TY L +
Sbjct: 478 LLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAY 537
Query: 211 MAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAI--------- 246
+ VP P+ Y +DGL K G + +A +V++ +
Sbjct: 538 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADS 597
Query: 247 -------GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
H + T L+DGLCK ++ A ++ ++ + G P+ + Y+ +I
Sbjct: 598 DFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS-GCEPNHIVYDALID 656
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFCK G+ A + L M + G P+
Sbjct: 657 GFCKAGKIDSAQEVFLQMTKCGYLPS 682
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 152/393 (38%), Gaps = 101/393 (25%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALV- 67
LGR+ + P+ VT+N+L++ L + G++ R+ K+++ FC D + AL
Sbjct: 197 LGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCK 256
Query: 68 ------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------P 110
AL++ E +F K D V CT++I GL + + D+ M P
Sbjct: 257 EGRWADALDMIER--EDF----KLDTVLCTHMISGLMEASY-FDEAMSFLHRMRCNSCIP 309
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------FAWWSK-- 162
+VVT + K ++ ++ +M+ NPN +N+L+ +A+ K
Sbjct: 310 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 369
Query: 163 ------GCRHDVYSYNILINGYCKDRNV-------------------------------- 184
GC YNI I C +
Sbjct: 370 NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA 429
Query: 185 ---------EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+ A L +EM+ +G D +TY+ + M + V
Sbjct: 430 RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 489
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD + YT ID K G + +A +F + + C T+ T LI K ++ A DI
Sbjct: 490 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 549
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
FH M + G P+ VTY ++ G CK G KA
Sbjct: 550 FHR-MVDAGCRPNDVTYGALVDGLCKAGNISKA 581
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 148/338 (43%), Gaps = 56/338 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ +T+++LI GR A RLF ++ C P + TL + A
Sbjct: 229 CF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKA 287
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM C P V T T +I GL K G M+ G+ PDVV LN +
Sbjct: 288 LDLFEEMKR---AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNL 344
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSKGCRHD 167
+ L K G++EE + M P +YNT++ +W+ K
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS 404
Query: 168 V----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
V ++Y+ILI+GYCK VE A+ L EM +G PP Y
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF-----------------PPCPAAY 447
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I+ L K A ++F + + ++ +I K G+L A D+F+ M+
Sbjct: 448 CSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE-MK 506
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
N G PDV YN ++ G K G +AN LL MEE G
Sbjct: 507 NQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 146/339 (43%), Gaps = 56/339 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + +L TP++V N+L+ L GR+ E +F ++ ++ C P V+++
Sbjct: 317 GRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSY 376
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NT V LFE K V ++ D + D + P T +++ D
Sbjct: 377 NT---VIKALFE---------SKAHVSEVSSWFDKMKAD------SVSPSEFTYSILIDG 418
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
K ++E+A LLE M ++ P Y +L++ K R++ +
Sbjct: 419 YCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG---KAKRYEAANELFKELKENFG 475
Query: 171 ------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
Y ++I + K + +AV L EM ++G D YN L
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL--------------- 520
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ G+ K G + EA + + + C I + N +++G + G + A ++F + ++
Sbjct: 521 --MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETI-KH 577
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+ PD VTYN ++ F G ++A ++ +M++ G E
Sbjct: 578 SGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFE 616
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 59/318 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ L+K L + +A +F + C P T+N++ L+ + ++ EM
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
NE C PD +T + +I K G M D M+P + K G
Sbjct: 225 NEGD--CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVG 282
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
K+E+A L E M + GC VY+Y LI G K V++
Sbjct: 283 KVEKALDLFEEMKR---------------------AGCSPTVYTYTELIKGLGKAGRVDE 321
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A ++ML +G+ D N L + V G V E VFS +
Sbjct: 322 AYGFYKDMLRDGLTPDVVFLNNLMNILGKV-----------------GRVEELTNVFSEM 364
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
G +C T+ + N +I L + + M+ ++P TY+I+I G+CK +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 307 HQKANGLLLDMEETGLEP 324
+KA LL +M+E G P
Sbjct: 425 VEKALLLLEEMDEKGFPP 442
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------VFCCDPNVITFNTLALVALN 70
+P+ T++ LI G C R+ +A L ++++ +C N + A
Sbjct: 406 SPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANE 465
Query: 71 LFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
LF+E+ FG + C + + + M +QG PDV N + +
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV 525
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K G + EAN LL M + + ++N +++GFA G + D
Sbjct: 526 KAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGV 585
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+YN L+ + E+A + REM +G DA TY+++ A+ NV
Sbjct: 586 TYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV 632
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 202 DATTYNTLFMAINNVPPDSHVYTT------YIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+A Y ++ I V +++V + + L + V +A+ VF KC T
Sbjct: 138 EARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTS 197
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N +I L + G+ + +++ + PD +TY+ +I + K G++ A L
Sbjct: 198 STYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFD 257
Query: 316 DMEETGLEP 324
+M++ ++P
Sbjct: 258 EMKDNCMQP 266
>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
Length = 500
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 154/338 (45%), Gaps = 59/338 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLAL---------VALN 70
P++V +NS++ GLC R LEA + + V C P V+T+ +L +A+
Sbjct: 116 PDVVIYNSIVDGLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMT 175
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
++ M+ +P +V+ + IIDGL K G + D G +VV + D
Sbjct: 176 IWNAMLER---KIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLID 232
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-------------CRHD 167
L K G +++A L +M + PN TY TL+D F + C D
Sbjct: 233 GLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLD 292
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V Y +++G C++R ++DA +L REM G+ A D+H Y +
Sbjct: 293 VAMYTAVVSGLCRERRLDDARALFREMRLAGVSA-----------------DTHAYNVLL 335
Query: 228 DGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
G +++G EA ++ +G+ CV + T N +I G C L+ +F+ + Q G
Sbjct: 336 HGAFRSGRSEEAFRILEELGDDPGCVANLLTYNTVIAGCC----LESGMVLFYEMRQR-G 390
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ PD TY+ +I G+ ++A L +M +GL P
Sbjct: 391 IAPDFATYSALIDRLLGSGEIRRAFDLCEEMLASGLSP 428
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 60/357 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALNL 71
PN F SLI L R+ +AAR + + P+V+TF N + A +
Sbjct: 9 PNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEI 68
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-----------MDQGMRPDVVTLNVMTD 120
F+EM+ C+PD +IDG CK+ M +++ ++PDVV N + D
Sbjct: 69 FQEMIKSNR--CQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVD 126
Query: 121 NLSKDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L + + EA L E M+++ +P TY +L+ G A + +
Sbjct: 127 GLCRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQ 186
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------------- 209
+ SY+++I+G K V DA + REM + G + Y TL
Sbjct: 187 PTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLIDGLCKSGFLDDAYAL 246
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+ Y T ID +N A+ +F I ++ C L + ++ GLC+
Sbjct: 247 YRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDY-CPLDVAMYTAVVSGLCR 305
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
RL A +F M+ G++ D YN+++HG + G+ ++A +L EE G +P
Sbjct: 306 ERRLDDARALFRE-MRLAGVSADTHAYNVLLHGAFRSGRSEEAFRIL---EELGDDP 358
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 36/251 (14%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWW- 160
P+ + D LSK ++ +A LE+M ++P+ T+ L+ GF AW
Sbjct: 9 PNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTFTALIRGFCKNRMVERAWEI 68
Query: 161 ------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG-IRADATTYNTLF--- 210
S C+ D + Y +LI+GYCK+ ++ A+ L REM E I+ D YN++
Sbjct: 69 FQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGL 128
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M P YT+ I G K + AM +++A+ K T
Sbjct: 129 CRSNRFLEAWKFLDETMVRQGCSPTVVTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPT 188
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I + + +IDGL K GR+ A+ + M+ G +VV Y +I G CK G A L
Sbjct: 189 IVSYSVIIDGLSKAGRVYDAYRVVRE-METLGCELNVVIYTTLIDGLCKSGFLDDAYALY 247
Query: 315 LDMEETGLEPN 325
M+ +G PN
Sbjct: 248 RIMKRSGAFPN 258
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 217 PPDSHVYTTYIDGLYKN---GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
PP+ H + + ID L K+ G A+++ G H V+T LI G CK ++
Sbjct: 8 PPNQHAFASLIDALSKSNRLGDAARALELMCDAGIHPDVVTF---TALIRGFCKNRMVER 64
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME-ETGLEPN 325
AW+IF ++++ PD Y ++I G+CKE + +A LL +M E ++P+
Sbjct: 65 AWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERRIQPD 117
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 161/359 (44%), Gaps = 40/359 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F ++ ++ F P+ T+ +I LC R+ +A LF+++ +P+V T
Sbjct: 430 VGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYT 489
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK--------DGF--MM 104
+ L + L E+ + F + C P+VVT T ++ K D F M+
Sbjct: 490 YTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMV 549
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
P+ +T + + D L K G++++A + +I N + Y D +
Sbjct: 550 GDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKD-----TDTI 604
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVP---- 217
+V +Y L+NG CK + V DA L ML+ G + Y+ L F + +
Sbjct: 605 SPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQE 664
Query: 218 -----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
P H YT+ ID ++K+G + AMKV S + C + T ++DGLC
Sbjct: 665 VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLC 724
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A ++ LM+ G +P+VVTY +I G K G+ L + M+ G PN
Sbjct: 725 KTGETEKALNLLS-LMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPN 782
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 154/392 (39%), Gaps = 99/392 (25%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALV- 67
LGR+ + P+ VT+N+L++ L + G++ A R+ K+++ FC D + + AL
Sbjct: 192 LGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCK 251
Query: 68 ------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PD 111
AL+L E +F K D V CT +I GL + + MR P+
Sbjct: 252 EGRWGDALDLLER--EDF----KLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPN 305
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------DGFAWWSK--- 162
VVT + K ++ ++ +M+ NP+ +N+L+ + +A+ K
Sbjct: 306 VVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFN 365
Query: 163 -----GCRHDVYSYNILINGYCKDRNV--------------------------------- 184
GC YNI I C +
Sbjct: 366 RMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFAR 425
Query: 185 --------EDAVSLCREMLSEGIRADATTYNT----------------LFMAINNVP--P 218
E A + +EM+ +G DA+TY LF + V P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D + YT ID K G + +A F + + C + T L+ K +L A DIF
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
H ++ + P+ +TY+ +I G CK G+ QKA
Sbjct: 546 HRMVGD-ACYPNAITYSALIDGLCKAGEIQKA 576
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 150/370 (40%), Gaps = 74/370 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + + PN+VT+ +L+ G + ++ R+ + C+P+ FN+L
Sbjct: 293 FLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYC 352
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------------MDQGM 108
A LF M N G C P V I +C + ++ +
Sbjct: 353 NAEDYAYAYKLFNRM-NTCG--CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEML 409
Query: 109 RPDVVTLNVMTDNLSK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
V + T N ++ GK E+A +++ M+++ P+ TY ++
Sbjct: 410 VASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVD 469
Query: 155 DGFAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F + + G DVY+Y ILI+ +CK +E A S EM S G + TY L
Sbjct: 470 KAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALL 529
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
H Y K+ + +A +F + C T + LIDGLCK G
Sbjct: 530 ----------HAYL-------KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGE 572
Query: 271 LKIAWDIFHMLM---------------QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
++ A +++ L+ ++P+VVTY +++G CK + A+ LL
Sbjct: 573 IQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLD 632
Query: 316 DMEETGLEPN 325
M G EPN
Sbjct: 633 AMLAAGCEPN 642
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 140/346 (40%), Gaps = 68/346 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S LL +L + PN + +++L+ G C G I A +F ++ P+V T+
Sbjct: 623 KVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYT 682
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
+L +A+ + +M+ + C P+VVT T ++DGLCK G M
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSQMLKD---SCNPNVVTYTAMVDGLCKTGETEKALNLLSLM 739
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+G P+VVT + D L K GK++ LE+ +Q +KG
Sbjct: 740 EKKGCSPNVVTYTALIDGLGKAGKVDAG---LELFMQMK------------------TKG 778
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C + +Y ILIN C ++DA L EM + P Y
Sbjct: 779 CAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQ-----------------THWPKYLQGY 821
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T + G K L ++ + + +H LID K GRL+ A ++ +M+
Sbjct: 822 RTTVQGFSKR--FLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMME 879
Query: 284 NPG----LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ D+ T +I C Q ++A L +M G+ P+
Sbjct: 880 VSSSLNMASKDMHTS--LIQALCLSSQVEEAVALYSEMRRRGIVPD 923
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 148/338 (43%), Gaps = 56/338 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ +T+++LI GR A RLF ++ C P + TL + A
Sbjct: 229 CF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKA 287
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM C P V T T +I GL K G M+ G+ PDVV LN +
Sbjct: 288 LDLFEEMKR---AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNL 344
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSKGCRHD 167
+ L K G++EE + M P +YNT++ +W+ K
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS 404
Query: 168 V----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
V ++Y+ILI+GYCK VE A+ L EM +G PP Y
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF-----------------PPCPAAY 447
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I+ L K A ++F + + ++ +I K G+L A D+F+ M+
Sbjct: 448 CSLINALGKAKRYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE-MK 506
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
N G PDV YN ++ G K G +AN LL MEE G
Sbjct: 507 NQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 145/339 (42%), Gaps = 56/339 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + +L TP++V N+L+ L GR+ E +F ++ ++ C P V+++
Sbjct: 317 GRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSY 376
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NT V LFE K V ++ D + D + P T +++ D
Sbjct: 377 NT---VIKALFE---------SKAHVSEVSSWFDKMKAD------SVSPSEFTYSILIDG 418
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------- 170
K ++E+A LLE M ++ P Y +L++ K R++
Sbjct: 419 YCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG---KAKRYEAADELFKELKENFG 475
Query: 171 ------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
Y ++I + K + +AV L EM ++G D YN L
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNAL--------------- 520
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ G+ K G + EA + + + C I + N +++G + G + A ++F + ++
Sbjct: 521 --MSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETI-KH 577
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
G+ PD VTYN ++ F G ++A ++ +M++ G E
Sbjct: 578 SGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFE 616
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 126/318 (39%), Gaps = 59/318 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ L+K L + +A +F + C P T+N++ L+ + ++ EM
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
NE C PD +T + +I K G M D M+P + K G
Sbjct: 225 NEGD--CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVG 282
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
K+E+A L E M + GC VY+Y LI G K V++
Sbjct: 283 KVEKALDLFEEMKR---------------------AGCSPTVYTYTELIKGLGKAGRVDE 321
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A ++ML +G+ D N L + V G V E VFS +
Sbjct: 322 AYGFYKDMLRDGLTPDVVFLNNLMNILGKV-----------------GRVEELTNVFSEM 364
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
G +C T+ + N +I L + + M+ ++P TY+I+I G+CK +
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 307 HQKANGLLLDMEETGLEP 324
+KA LL +M+E G P
Sbjct: 425 VEKALLLLEEMDEKGFPP 442
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------VFCCDPNVITFNTLALVALN 70
+P+ T++ LI G C R+ +A L ++++ +C N + A
Sbjct: 406 SPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADE 465
Query: 71 LFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
LF+E+ FG + C + + + M +QG PDV N + +
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV 525
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVY 169
K G + EAN LL M + + ++N +++GFA G + D
Sbjct: 526 KAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGV 585
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+YN L+ + E+A + REM +G DA TY+++ A+ NV
Sbjct: 586 TYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV 632
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 202 DATTYNTLFMAINNVPPDSHVYTT------YIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+A Y ++ I V +++V + + L + V +A+ VF KC T
Sbjct: 138 EARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTS 197
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N +I L + G+ + +++ + PD +TY+ +I + K G++ A L
Sbjct: 198 STYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFD 257
Query: 316 DMEETGLEP 324
+M++ ++P
Sbjct: 258 EMKDNCMQP 266
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 146/341 (42%), Gaps = 60/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----------ALVALN 70
P++ T+N++I C GRI EA +K PN ++ L A
Sbjct: 339 PDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGM 398
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
LF + E G KPD+V+ I G+ G MM++G+ PD NV+
Sbjct: 399 LFR--IAEIGE--KPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMS 454
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K+G+ LL M+ R+V P+ + TLMDGF KG
Sbjct: 455 GLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDP 514
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV--PPDSHVYT 224
+ YN +I G+CK + DA+S +M NV PD + Y+
Sbjct: 515 GIVGYNAMIKGFCKFGKMTDALSCLNKM-------------------KNVHHAPDEYTYS 555
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T IDG K + A+K+F + HK + T LI+G CK + A +F M++
Sbjct: 556 TVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRG-MKS 614
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L P+VVTY ++ GF K G+ +KA + M G PN
Sbjct: 615 FDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPN 655
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 149/353 (42%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE---EM 75
P++V +N +I G C +G + A R K+L + P V T+ L FE ++
Sbjct: 234 PHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQL 293
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ E +V N+ID K G M + G PD+ T N M + K
Sbjct: 294 LTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCK 353
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYS 170
G+++EA+ LE +R + PN +Y LM F G + D+ S
Sbjct: 354 GGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVS 413
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y I+G ++ A+ + +M+ +G+ DA YN L +
Sbjct: 414 YGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEML 473
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
NV PD +V+ T +DG +NG + EA+K+F I I N +I G CK G++
Sbjct: 474 DRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMT 533
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M+N PD TY+ +I G+ K+ A + M + +PN
Sbjct: 534 DALSCLNK-MKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPN 585
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 154/367 (41%), Gaps = 69/367 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN ++ L+ C +G ++AA + ++ P+++++ VAL +
Sbjct: 374 PNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMV 433
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
E+M+ E GV PD ++ GLCK+G M+D+ ++PDV + D
Sbjct: 434 REKMM-EKGVF--PDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDG 490
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------GCRH--D 167
++G+++EA + +V+I++ V+P YN ++ GF + K H D
Sbjct: 491 FIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPD 550
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
Y+Y+ +I+GY K ++ A+ + +M+ + + TY +L
Sbjct: 551 EYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFR 610
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M ++ P+ YTT + G +K G +A +F + + C T + LI+GL
Sbjct: 611 GMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTA 670
Query: 270 --------------RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ D F M++ + G + YN +I CK G A LL
Sbjct: 671 TSPVLIEEKDSMENERSLILDFFTMML-SEGWDQVIAAYNSVIVCLCKHGMVDTAQLLLT 729
Query: 316 DMEETGL 322
M G
Sbjct: 730 KMLTKGF 736
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 111/252 (44%), Gaps = 37/252 (14%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD--------------VNPNTCTYNTLMD 155
P VV N + + L K GK++ A L + M+Q D V C + +
Sbjct: 160 PTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEE 219
Query: 156 GFAW----WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
G W KGC V YN++I+GYCK +++ A +E+ +G+ TY L
Sbjct: 220 GRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALIN 279
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
MA + + V+ ID +K G V +A + + C
Sbjct: 280 GFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGP 339
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
I T N +I+ CK GR+K A D F + GL P+ +Y ++H +CK+G + KA G+
Sbjct: 340 DITTYNTMINFSCKGGRIKEA-DEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGM 398
Query: 314 LLDMEETGLEPN 325
L + E G +P+
Sbjct: 399 LFRIAEIGEKPD 410
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 126/325 (38%), Gaps = 43/325 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +LL +L P++ F +L+ G G + EA ++FK + DP ++ +
Sbjct: 460 GRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGY 519
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKD----------GFMM 104
N + + F +M + + K PD T + +IDG K G MM
Sbjct: 520 NAM-IKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMM 578
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+P+V+T + + K M A + M D+ PN TY T
Sbjct: 579 KHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTT------------ 626
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
L+ G+ K E A S+ ML G + T++ L + N S V
Sbjct: 627 ---------LVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTAT-SPVLI 676
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
D + ++ + F+ + + I N +I LCK G + A + M
Sbjct: 677 EEKDSMENERSLI--LDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMVDTA-QLLLTKMLT 733
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQK 309
G D V + M+HG C +G+ ++
Sbjct: 734 KGFLIDSVCFTAMLHGLCHKGKSKE 758
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 39/153 (25%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIG 269
M ++ P ++ I ++G + A+++F + H C+ T+ N L++GL K G
Sbjct: 117 MKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLVKSG 176
Query: 270 RLKIAWDIFHMLMQN--------------------------------------PGLTPDV 291
++ +A ++ ++Q G P V
Sbjct: 177 KVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHV 236
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
V YN++I G+CK+G Q A L +++ G+ P
Sbjct: 237 VFYNMIIDGYCKKGDLQCATRTLKELKMKGVLP 269
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 161/368 (43%), Gaps = 66/368 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P +N++ + L G IL A L+ ++ C PN T+ L A+ AL +
Sbjct: 177 PTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKM 236
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----------RPDVVTLNVMTDN 121
F+EM+ E G++ PDV T ++ LC +G + D G PD VT V
Sbjct: 237 FDEML-ERGIV--PDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSG 293
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS----KGCRHD 167
L K G+++EA E++ Y+ L+DG ++++ K D
Sbjct: 294 LCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPD 353
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
+ Y ILI + + +DA L EM +G D YNTL A+
Sbjct: 354 ITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMS 413
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
NNV DS + I GL K G + +AM+VF +G H C T+ T N LIDGL + G
Sbjct: 414 EMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAG 473
Query: 270 RLKIAWDIFHMLM--QNPGL----------TPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
L+ A +FH + NP L D + ++ G C+ GQ KA LL +
Sbjct: 474 MLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGI 533
Query: 318 EETGLEPN 325
E+G+ P+
Sbjct: 534 IESGVVPD 541
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 160/385 (41%), Gaps = 62/385 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A + +L P++ + L+ LC EGRI +A RL + C P+ +T+
Sbjct: 228 GMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTY 287
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPD----VVTCTNIIDGLCKDGF----------MMD 105
L +E + F ++ ++ + +IDGL + G M+
Sbjct: 288 TVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLG 347
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+ + PD+ ++ ++ G+ ++A LL+ M + P+T YNTL+
Sbjct: 348 KSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDR 407
Query: 158 --AWWSKGCRHDVY----SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ S+ +++V ++NI+I G CK ++ A+ + EM G TYN L
Sbjct: 408 AQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALID 467
Query: 211 -----------------MAINNVPP-------------DSHVYTTYIDGLYKNGFVLEAM 240
M + N P D+ +DG+ ++G VL+A
Sbjct: 468 GLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAY 527
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K+ I V + T N LI+GLCK L A +F L Q G++PD +TY +I G
Sbjct: 528 KLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKEL-QLKGISPDEITYGTLIDG 586
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+ + A L ++ +G P+
Sbjct: 587 LWRAHRENDATMLFQNILRSGGFPS 611
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 94/241 (39%), Gaps = 40/241 (16%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M D RP N + L G + A L M+ PN+ TY LMDG
Sbjct: 170 MGDFDCRPTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGL----- 224
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
CK DA+ + EML GI D Y L
Sbjct: 225 ----------------CKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDA 268
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M N PPD YT ++ GL K G V EA F + + L + +CLIDG
Sbjct: 269 GRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDG 328
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
L + GR ++ M ++PD+ Y I+I F + G+ + A LL +M++ G P
Sbjct: 329 LFQAGRFDEGLS-YYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVP 387
Query: 325 N 325
+
Sbjct: 388 D 388
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 69/337 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G +L +P++ + LI+ GR +A L ++ P+ +
Sbjct: 333 GRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCY 392
Query: 62 NTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL AL A +L EM+ V+ D T +I GLCK G
Sbjct: 393 NTLLKALFDVGNIDRAQSLMSEMLQNNVVL---DSTTHNIMICGLCKKGLIDKAMQVFDE 449
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP--------------NTC 148
M + G P V+T N + D L + G +EEA L M + NP +T
Sbjct: 450 MGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKM-EMGNNPSLFLRLTLGANQVRDTE 508
Query: 149 TYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
+ L+DG + G DV +YN LING CK +N++ A+ L +E+
Sbjct: 509 SLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKEL 568
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+GI D TY TL IDGL++ +A +F I +
Sbjct: 569 QLKGISPDEITYGTL-----------------IDGLWRAHRENDATMLFQNILRSGGFPS 611
Query: 255 IETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPD 290
+ N ++ LC++ +L A +++ L + L+P+
Sbjct: 612 LPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPE 648
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 136/348 (39%), Gaps = 74/348 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL------------ 49
GR F+LL + F P+ +N+L+K L G I A L ++
Sbjct: 368 GRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTH 427
Query: 50 NVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------ 103
N+ C + L A+ +F+EM E G C P V+T +IDGL + G +
Sbjct: 428 NIMICG---LCKKGLIDKAMQVFDEM-GEHG--CHPTVMTYNALIDGLYRAGMLEEARML 481
Query: 104 ---MDQGMRP--------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
M+ G P D +L + D + + G++ +A LL +I+ V P+
Sbjct: 482 FHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPD 541
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
TYNTL++G KG D +Y LI+G + DA L +
Sbjct: 542 VVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQ 601
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL-------------------YKN 233
+L G YNT+ ++ + S ++D L +++
Sbjct: 602 NILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANARKCFED 661
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
GF+ E +K I L + GLC++ ++ A IFH+L
Sbjct: 662 GFLDETVKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIFHIL 709
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 148/383 (38%), Gaps = 77/383 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ +L + + T N +I GLC +G I +A ++F ++ C P V+T+N L L
Sbjct: 411 LMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLY 470
Query: 68 ALNLFEEMVNEF-----------------GVICKPDVVTCTNIIDGLCKDGFMM------ 104
+ EE F G D + ++DG+C+ G ++
Sbjct: 471 RAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLL 530
Query: 105 ----DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+ G+ PDVVT N + + L K ++ A L + + + ++P+ TY TL+DG W
Sbjct: 531 RGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGL--W 588
Query: 161 SKGCRHDVYS----------------YNILINGYCKDRNVEDAVSL-------------- 190
+D YN ++ C+ + + A++L
Sbjct: 589 RAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPE 648
Query: 191 ------CREMLSEGIRADATT----YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
R+ +G + + ++ ++N P YT ++ GL + + +A+
Sbjct: 649 DEVIANARKCFEDGFLDETVKELIKIDQVYGSLNPNP-----YTIWVIGLCQVRKIDDAL 703
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
++F + V+T C LI+ LC L A DI + + V N ++
Sbjct: 704 RIFHILEEFGIVVTPACCALLINYLCWDRNLNAAVDIMMYTLSKRFIVSQPVG-NRLLRS 762
Query: 301 FCKEGQHQKANGLLLDMEETGLE 323
C + A L M G +
Sbjct: 763 LCIRYRRHDAQALSWRMHLVGYD 785
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 73/339 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ SGG V LG FNSLI+ G E+ ++FK + P+V+TFN
Sbjct: 155 KKSGGAVKLGDRF----------FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFN 204
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----- 108
+L + L LF+EM++ +GV PD T +I G C + M+D+G
Sbjct: 205 SLLSIVLKRGRTSMAKQLFDEMLDTYGVT--PDTYTFNILIRGFCMNS-MVDEGFWFFKE 261
Query: 109 ------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN--PNTCTYNTLMDGFAWW 160
PDVVT N + D L + GK++ A+ +++ M+++ N PN TY T
Sbjct: 262 MSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTT-------- 313
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
LI GYC +++ +A+SL EM+S G++ + TYNTL +
Sbjct: 314 -------------LIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEA---- 356
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
L K +LE M +G+ + T N LI C +G+L+ A+ +F
Sbjct: 357 -------QKLDKIKEILEGM-----VGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEK 404
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
M + PD TY++++ C+ G ++A ++ E
Sbjct: 405 -MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAE 442
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 132/328 (40%), Gaps = 58/328 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
TP+ TFN LI+G C + E FK+++ F CDP+V+T+NTL
Sbjct: 233 TPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLV-------------D 279
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ V N++ G+ K + P+VVT + M EA LL M+
Sbjct: 280 GLCRAGKVKIAHNVVKGMVKKS----PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNILINGYCKDRNV 184
R + PN TYNTL+ G K G D + N LI +C +
Sbjct: 336 SRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E+A S+ + M+ V PDS Y+ + L + G A + F
Sbjct: 396 EEAFSVFEK-----------------MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFD 438
Query: 245 AIGNHKCVL-------TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+ + +L + N + + LC G+ K A +F LM+ T D +Y +
Sbjct: 439 ELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG--TQDPPSYKTL 496
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G C+EG + LL+ M P+
Sbjct: 497 ILGHCREGTPEAGFDLLVLMLRRDFVPD 524
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
+N LI Y ++++ + + M G+ T+N+L +
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V PD++ + I G N V E F + KC + T N L+DGLC+ G++
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
KIA ++ M+ ++P L+P+VVTY +I G+C + +A LL +M GL+PN
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 51/303 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P+ T N+LIK CT G++ EA +F+K++ P+ T++ L A
Sbjct: 375 FIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAE 434
Query: 70 NLFEEMVNE----FGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
F+E+ + V CKP V + + LC +G +M +G + D +
Sbjct: 435 EFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSY 493
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------AWWSKGCRHDVY 169
+ ++G E LL +M++RD P+ TY ++DG K +
Sbjct: 494 KTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLK 553
Query: 170 S--------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
S ++ ++ + ++ SL + ML IR N+ +H
Sbjct: 554 SSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIR-------------QNIDLSTH 600
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ L ++ +LEA K+ + + I+ C+ +I GLCK ++ A+ +++ L
Sbjct: 601 TMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYEL 660
Query: 282 MQN 284
++
Sbjct: 661 VEK 663
>gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 588
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 53/355 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA----------L 69
+PN V++N+LIKGLC+ + +A LF LN + PN +T N +
Sbjct: 186 SPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKGVIGNNNT 245
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L EE+++ V D+VTCT ++D K+G M + + D V NV+
Sbjct: 246 KLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDSVVYNVII 305
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
L G M A + M++R VNP+ TYNTL+ K G
Sbjct: 306 RGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGTMQNVGVA 365
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------------- 209
D SY ++I G C +V+ A + ML + + +N +
Sbjct: 366 PDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGDTSCALSV 425
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M V P+ + I G K G +++A V + + + K T N L+ C
Sbjct: 426 LNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLLVGAACT 485
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+G L++A+ ++ +++ G PD++TY ++ G C +G+ ++A LL M+ +G+
Sbjct: 486 LGHLRLAFQLYDEMLKR-GCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSGI 539
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 138/327 (42%), Gaps = 62/327 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++L S F P ++ N L+ GLC G I +A L +++ PN +++
Sbjct: 133 GKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMGPSPNCVSY 192
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
NTL L ++N ++ + F + K G++P+ VT N++
Sbjct: 193 NTLIKGLCSVNNVDKALYLFSTLNK---------------------YGIKPNRVTCNIIV 231
Query: 120 DNLSKDGKMEEANCLL--EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
L + G + N L E++ VN D+ + IL++
Sbjct: 232 HALCQKGVIGNNNTKLLEEILDSSQVNAPL-------------------DIVTCTILMDS 272
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
K+ NV A+ + +EM + NVP DS VY I GL +G ++
Sbjct: 273 CFKNGNVVQALEVWKEM-----------------SQKNVPTDSVVYNVIIRGLCSSGNMV 315
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A + + T N LI LCK G+ +A D+ H MQN G+ PD ++Y ++
Sbjct: 316 AAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDL-HGTMQNVGVAPDQISYKVI 374
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEP 324
I G C +G +AN L M + L P
Sbjct: 375 IQGLCIQGDVDRANEFLQSMLKRSLLP 401
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 66/279 (23%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGV 81
V +N +I+GLC+ G ++ A + +P+V T+NTL AL F+ + G
Sbjct: 299 VVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGT 358
Query: 82 I----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
+ PD ++ II GLC G M+ + + P+V+ NV+ D + G
Sbjct: 359 MQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGD 418
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSK----------------- 162
A +L +M+ V PN T N L+ G+ AWW K
Sbjct: 419 TSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNL 478
Query: 163 ------------------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
GC+ D+ +Y L+ G C +++A SL M G
Sbjct: 479 LVGAACTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSG 538
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLY-KNGFV 236
I D + L + Y Y L +NG V
Sbjct: 539 ITMDHVPFLILVKKYTRLQRPDEAYLVYKKWLVTRNGGV 577
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LC G++ A + ++++ G P ++ +N +++G CK G +KA+GL+ +M E G P
Sbjct: 129 LCLQGKMDAALWLREKMLRS-GFIPGLIMHNHLLNGLCKLGYIEKADGLVREMREMGPSP 187
Query: 325 N 325
N
Sbjct: 188 N 188
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 160/358 (44%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F ++VT+N LI GLC G +LEA + K L +V+T+ TL L +
Sbjct: 249 FDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGI 308
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
L EMV E G + P + ++DGL K G + G P++ N +
Sbjct: 309 CLMNEMV-ELGFV--PTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALI 365
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCR 165
+ L K +++A L + M ++ N TY+ L+D F +++ + G R
Sbjct: 366 NALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIR 425
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
+Y YN LING+CK ++ A L +M++EG+ ATT+ TL
Sbjct: 426 ETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKL 485
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P + +T I GL + EA K+F + K T T N +I+G CK
Sbjct: 486 YREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCK 545
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A+++ ++ N GL PD TY +I G C G+ A + D+ + L+ N
Sbjct: 546 AHNMDKAFELLEDMLHN-GLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLN 602
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S L +++ P TF +LI G C + ++ +A +L++++N P+V TF
Sbjct: 442 GDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTF 501
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
L A LF+EMV KP VT +I+G CK F
Sbjct: 502 TALIYGLCSTNEMAEASKLFDEMVER---KIKPTEVTYNVMIEGYCKAHNMDKAFELLED 558
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ G+ PD T + L G++ A ++ + ++++ N Y+ L+ G+
Sbjct: 559 MLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGR 618
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G D+ + +LI+G K ++++ L ++M +G+R D+ Y +
Sbjct: 619 LTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTS 678
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ M P+ YT +++GL K G + A +F +
Sbjct: 679 MIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTAN 738
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T C +D L K G +K A D+ H +++ GL + TYNI+I GFCK G+ +A
Sbjct: 739 ISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK--GLLANTATYNILIRGFCKLGRLIEA 796
Query: 311 NGLLLDMEETGLEPN 325
+L +M E G+ P+
Sbjct: 797 TKVLSEMTENGIFPD 811
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 150/352 (42%), Gaps = 55/352 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA- 65
F LL +L + P+ T+ LI GLC+ GR+ A L+ N + ++ L
Sbjct: 552 AFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLH 611
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQG 107
AL+ EM+ G+ D+V +IDG K M DQG
Sbjct: 612 GYCGQGRLTEALSASCEMIQR-GI--NMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQG 668
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+RPD V M D SK+G +++ L++M+ PN TY M+G
Sbjct: 669 LRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAG 728
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ + +Y ++ K+ N+++A L EML +G+ A+ TYN L
Sbjct: 729 HLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML-KGLLANTATYNIL---- 783
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
I G K G ++EA KV S + + T + +I C+ G +
Sbjct: 784 -------------IRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGA 830
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +++ +++ G+ PD V +N++I+G C G KA L DM GL+P
Sbjct: 831 AVELWDTMLRK-GVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPR 881
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 147/366 (40%), Gaps = 67/366 (18%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LV 67
C + + F+ L+ R+ +A + + + P V T + + ++
Sbjct: 142 QCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFIL 201
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGFMMDQGMRPD--VVTLNV 117
+F+E VN GV KPD TC+ +I LC K+ + + R D +VT NV
Sbjct: 202 VWEVFDESVNA-GV--KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNV 258
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI---- 173
+ L K G + EA + + + ++ + + TY TL+ GF CR + I
Sbjct: 259 LIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGF------CRVQQFDDGICLMN 312
Query: 174 ----------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---- 213
L++G K N++ A L ++ G + YN L A+
Sbjct: 313 EMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGE 372
Query: 214 --------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
N+P + Y+ ID K G + A F + TI N
Sbjct: 373 DLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYN 432
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
LI+G CK G L A + + M N GL P T+ +I G+CK+ Q +KA L +M E
Sbjct: 433 SLINGHCKFGDLSAA-EFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNE 491
Query: 320 TGLEPN 325
+ P+
Sbjct: 492 KEIAPS 497
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 58/338 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + + N + +++L+ G C +GR+ EA ++ + +++
Sbjct: 582 GRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCH 641
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMM 104
L A+ ++M FG++ K PD V T++ID K+G M+
Sbjct: 642 AVLIDGAMKQ-QDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMV 700
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--- 161
+ P+VVT + L K G+++ A L E M+ +++PN+ TY +D
Sbjct: 701 TEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMK 760
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
KG + +YNILI G+CK + +A + EM GI D TY+T+
Sbjct: 761 EATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIY 820
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV----FSAIGNH 249
M V PDS + I G NG + +A ++ S
Sbjct: 821 EHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKP 880
Query: 250 KCVLTIE-----TCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ +L ++ CN L+ G C G + A ++H ++
Sbjct: 881 RQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSML 918
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 157 FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
F K H S+ IL++ +++ A SL +L G +D F+ +
Sbjct: 85 FLGLHKNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRG--SDPKFVFEKFLESHKQ 142
Query: 217 PPDSHV--YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
S + + +N V +A+ V + + + + T + +++GL +I + +
Sbjct: 143 CKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILV 202
Query: 275 WDIFHMLMQNPGLTPD-----------------------------------VVTYNIMIH 299
W++F + N G+ PD +VTYN++IH
Sbjct: 203 WEVFDESV-NAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIH 261
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G CK G +A + + E GL+ +
Sbjct: 262 GLCKGGGVLEALEVRKSLREKGLKED 287
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 73/339 (21%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ SGG V LG FNSLI+ G E+ ++FK + P+V+TFN
Sbjct: 155 KKSGGAVKLGDRF----------FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFN 204
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----- 108
+L + L LF+EM++ +GV PD T +I G C + M+D+G
Sbjct: 205 SLLSIVLKRGRTSMAKQLFDEMLDTYGVT--PDTYTFNILIRGFCMNS-MVDEGFWFFKE 261
Query: 109 ------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN--PNTCTYNTLMDGFAWW 160
PDVVT N + D L + GK++ A+ +++ M+++ N PN TY T
Sbjct: 262 MSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTT-------- 313
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
LI GYC +++ +A+SL EM+S G++ + TYNTL +
Sbjct: 314 -------------LIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEA---- 356
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
L K +LE M +G+ + T N LI C +G+L+ A+ +F
Sbjct: 357 -------QKLDKIKEILEGM-----VGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEK 404
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
M + PD TY++++ C+ G ++A ++ E
Sbjct: 405 -MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAE 442
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 132/328 (40%), Gaps = 58/328 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
TP+ TFN LI+G C + E FK+++ F CDP+V+T+NTL
Sbjct: 233 TPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLV-------------D 279
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ V N++ G+ K + P+VVT + M EA LL M+
Sbjct: 280 GLCRAGKVKIAHNVVKGMVKKS----PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK---------------GCRHDVYSYNILINGYCKDRNV 184
R + PN TYNTL+ G K G D + N LI +C +
Sbjct: 336 SRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKL 395
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E+A S+ + M+ V PDS Y+ + L + G A + F
Sbjct: 396 EEAFSVFEK-----------------MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFD 438
Query: 245 AIGNHKCVL-------TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+ + +L + N + + LC G+ K A +F LM+ T D +Y +
Sbjct: 439 ELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG--TQDPPSYKTL 496
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G C+EG + LL+ M P+
Sbjct: 497 ILGHCREGTPEAGFDLLVLMLRRDFVPD 524
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
+N LI Y ++++ + + M G+ T+N+L +
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V PD++ + I G N V E F + KC + T N L+DGLC+ G++
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287
Query: 272 KIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
KIA ++ M+ ++P L+P+VVTY +I G+C + +A LL +M GL+PN
Sbjct: 288 KIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPN 342
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 134/325 (41%), Gaps = 67/325 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
F P+ T N+LIK CT G++ EA +F+K++ P+ T++ L A
Sbjct: 375 FIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAE 434
Query: 70 NLFEEMVNE----FGVICKPDVVT--------CTN------------------------- 92
F+E+ + V CKP V C+N
Sbjct: 435 EFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYK 494
Query: 93 -IIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+I G C++G M+ + PD T +M D L K G A+ LE M++
Sbjct: 495 TLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKS 554
Query: 142 DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
P T +++++ A KGC H+ S L+ +N++ + R + G++
Sbjct: 555 SHLPTTAIFHSILA--ALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQD 612
Query: 202 DATTYNTLFMAINNVPPDSHVYT--TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
A FM I + + ++ + L ++ +LEA K+ + + I+ C+
Sbjct: 613 KA------FMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCS 666
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQN 284
+I GLCK ++ A+ +++ L++
Sbjct: 667 TVISGLCKAHKVSEAFALYYELVEK 691
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 147/336 (43%), Gaps = 79/336 (23%)
Query: 21 PNMVTFNSLIKGLCTEG--RILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
PN+VT+N++I C +G + A+ F ++ C P+ ITFN+L V A
Sbjct: 301 PNLVTYNAVIDA-CGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAAR 359
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
NLF+EM N + + DV + N + D + K G+M+
Sbjct: 360 NLFDEMSN----------------------------RRIEQDVFSYNTLLDAICKGGQMD 391
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-----------------DVYSYN 172
A +L M + + PN +Y+T++DGFA K R D SYN
Sbjct: 392 LAFEILAQMPAKRIMPNVVSYSTVIDGFA---KAGRFDEALNLFGEMRYLNIALDRVSYN 448
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
L++ Y K E+A+ + REM S GI+ D TYN L M
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE 508
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
+V P+ Y+T IDG K G EAM+VF + + + LID LCK G + A
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSA 568
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ M G++P+VVTYN +I F + +++
Sbjct: 569 VSLIDE-MTKEGISPNVVTYNSIIDAFGRSATMERS 603
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 161/379 (42%), Gaps = 88/379 (23%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAAR-LFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
C P+ +TFNSL+ +C+ G + EAAR LF +++ + +V ++NTL L A+ +M
Sbjct: 334 CVQPDRITFNSLL-AVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTL-LDAICKGGQMD 391
Query: 77 NEFGVICK-------PDVVTCTNIIDGLCKDGF--------------------------- 102
F ++ + P+VV+ + +IDG K G
Sbjct: 392 LAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLL 451
Query: 103 ------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
M G++ DVVT N + K GK +E + M + V
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVL 511
Query: 145 PNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
PN TY+TL+DG++ + S G R DV Y+ LI+ CK+ V AVSL
Sbjct: 512 PNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSL 571
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG----FVLEAMKVFSAI 246
EM EGI + TYN++ A T Y NG F A+ +
Sbjct: 572 IDEMTKEGISPNVVTYNSIIDAFGRSA------TMERSADYSNGGSLPFSSSALSELTET 625
Query: 247 GNHKCV-----LTIETCNCLIDGLCKIGRLKIA--WDIFHMLMQNPGLTPDVVTYNIMIH 299
++ + LT E N + CK G +++ ++F + Q + P+VVT++ +++
Sbjct: 626 EGNRVIQLFGQLTSEGNNRMTKD-CKEGMQELSCILEVFRKMHQLE-IKPNVVTFSAILN 683
Query: 300 GFCKEGQHQKANGLLLDME 318
+ + A+ LL ++
Sbjct: 684 ACSRCNSFEDASMLLEELR 702
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 33/238 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDG-KMEEANCLLEVMIQRDVNPNTCTYNTLM----DGF 157
M + G+RP++VT N + D K G + ++ + M + V P+ T+N+L+ G
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGG 353
Query: 158 AWWS----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W + + DV+SYN L++ CK ++ L E+L++
Sbjct: 354 LWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMD----LAFEILAQ---------- 399
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + P+ Y+T IDG K G EA+ +F + L + N L+ K
Sbjct: 400 ---MPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTK 456
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+GR + A DI M + G+ DVVTYN ++ G+ K+G++ + + +M+ + PN
Sbjct: 457 VGRSEEALDILRE-MASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPN 513
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 24/180 (13%)
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
+S G + VY+++ LI+ Y + E+A+S+ M G+R + TYN +
Sbjct: 260 FSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGME 319
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M N V PD + + + + G A +F + N + + + N
Sbjct: 320 FKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNT 379
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPG--LTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
L+D +CK G++ +A F +L Q P + P+VV+Y+ +I GF K G+ +A L +M
Sbjct: 380 LLDAICKGGQMDLA---FEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 16/147 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR+ +L + ++VT+N+L+ G +G+ E ++F ++ PN++T
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLT 516
Query: 61 FNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDGF----------MM 104
++TL L++E + F + DVV + +ID LCK+G M
Sbjct: 517 YSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMT 576
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+G+ P+VVT N + D + ME +
Sbjct: 577 KEGISPNVVTYNSIIDAFGRSATMERS 603
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 73/360 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALNLF 72
N+V N+++ G C EG + EA RL +++ V PNV+TFN+ L A +F
Sbjct: 206 NLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIF 265
Query: 73 EEMVNEFGV-ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVV----------TLNVMTDN 121
++M ++ + +PD VT ++ G C GF+ + + D++ + N
Sbjct: 266 KDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSG 325
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CRHD 167
L ++G++ EA+ LL M ++PN+ TYN ++ G K D
Sbjct: 326 LVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPD 385
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +Y L++ YC N+ A + EM +G ++ TYN L +
Sbjct: 386 VVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVL-----------------L 428
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI---------- 277
L++ G EA ++ + L CN +IDGLC+ +L +A I
Sbjct: 429 QSLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGST 488
Query: 278 --------FHMLMQNPGLT----PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F ++ + ++ PD +TY+I+I CKEG+ +A LL+M + P+
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPD 548
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 156/395 (39%), Gaps = 84/395 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNVITFNTL- 64
L+ R+ + PN+VTFNS I LC GR+L+A R+FK + P+ +TF+ +
Sbjct: 229 LVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYRIFKDMQEDWQHGLPRPDQVTFDVML 288
Query: 65 ------------------------------------ALV-------ALNLFEEMVNEFGV 81
LV A L EM +E
Sbjct: 289 SGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAHELLREMAHER-- 346
Query: 82 ICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
P+ T I+ GLCK+G F+ M PDVVT + G + A
Sbjct: 347 -IHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAA 405
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---------------KGCRHDVYSYNILIN 176
N +L+ M Q+ PN+ TYN L+ W + KG D NI+I+
Sbjct: 406 NRILDEMAQKGCAPNSFTYNVLLQSL-WRAGRTTEAERLLERMSEKGYSLDTAGCNIIID 464
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------PDSHVYTTYIDGL 230
G C++ ++ A+ + M EG A N+ +++ PD Y+ I L
Sbjct: 465 GLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISAL 524
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G EA K + + I G CK G+ +A + M+ G P
Sbjct: 525 CKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRD-MEKKGCNPS 583
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN++I GF ++ + + L+ +MEE G+ PN
Sbjct: 584 TRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPN 618
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 155/354 (43%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNT-LALVALNLFEEMVN 77
P++VT+N+L+ EGR + L K++ C PN +T+N +A +A + E
Sbjct: 229 PSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAA 288
Query: 78 E----FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLS 123
E + K T +I GL GF M ++G+ P VVT N M L
Sbjct: 289 ELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLL 348
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G++E A M + P+ TYN+L++G+ G V
Sbjct: 349 QSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVL 408
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------- 216
+YNILI+GYC+ ++E+A L EM+ +G D TY L +NV
Sbjct: 409 TYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEM 468
Query: 217 -----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD Y T I G + ++ ++ I T N LIDGLCK G L
Sbjct: 469 LSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNL 528
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A ++ ++ N GL PD +TY +IH C+ G ++A DM GL P+
Sbjct: 529 KDAEELMMQMISN-GLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPS 581
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 56/339 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF------EE 74
P +VT+N++I GL G+I A F ++ P+VIT+N+L LN + +E
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSL----LNGYCKAGNQKE 390
Query: 75 MVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
+ FG + + P V+T +IDG C+ G M++QG PDV T ++
Sbjct: 391 ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMK 450
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT----------LMDGFAWWS----KGCRH 166
+ + M+ + + P+ YNT + F +G
Sbjct: 451 GSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISS 510
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D +YNILI+G CK N++DA L +M+S G++ D TY L A H
Sbjct: 511 DTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHA--------HC---- 558
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ GF+ EA K F+ + + + T +I C+ G L A+ F +++ G
Sbjct: 559 -----ERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEE-G 612
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+ +TYN++IH C+ G+ Q A +M E GL PN
Sbjct: 613 VEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPN 651
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 54/279 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G +L G + + P ++T+N LI G C G + EA RL +++ C P+V T+
Sbjct: 386 GNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTY 445
Query: 62 NTLALVALNL---------FEEMVNEFGVICKPDVVT-----CTNIIDGLCKDGF----- 102
L + N+ F+EM+++ G+ +PD C I G F
Sbjct: 446 TILMKGSHNVCSLAMTREFFDEMLSK-GL--RPDCFAYNTRICAEITLGDISKSFQLREV 502
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD-----GF 157
+M +G+ D VT N++ D L K G +++A L+ MI + P+ TY L+ GF
Sbjct: 503 IMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGF 562
Query: 158 AWWSKGCRHDVYS---------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++ +D+ S Y ++I+ YC+ N+ A R+ML EG+ + TYN
Sbjct: 563 LREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 622
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDG 229
L A+ + P+ + YT IDG
Sbjct: 623 LIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 43/259 (16%)
Query: 85 PDVVTCTNIIDGLCKDGF--MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
PD TC+ LC F M G+ PDV N + L + ++ + + M+Q
Sbjct: 173 PD--TCST----LCLSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLG 226
Query: 143 VNPNTCTYNTLMDGFAWWSK----------------GCRHDVYSYNILINGYCKDRNVED 186
+ P+ TYNTL+D F+ + C + +YN++I G + + +
Sbjct: 227 IEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLAR-KGYLE 285
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
+ E + +A + TYN L I GL GFV + + +
Sbjct: 286 EAAELVEEMRLSKKASSFTYNPL-----------------ITGLLARGFVKKVDDLQLEM 328
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
N + T+ T N +I GL + G+++ A F + M+ GL PDV+TYN +++G+CK G
Sbjct: 329 ENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKF-VEMRAMGLLPDVITYNSLLNGYCKAGN 387
Query: 307 HQKANGLLLDMEETGLEPN 325
++A L D+ GL P
Sbjct: 388 QKEALLLFGDLRRAGLAPT 406
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L I++ + + VT+N LI GLC G + +A L ++ P+ IT
Sbjct: 490 LGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCIT 549
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A F +M+++ G+ P VT T II C+ G
Sbjct: 550 YTCLIHAHCERGFLREARKFFNDMISD-GL--PPSAVTYTVIIHAYCRRGNLYSAYGWFR 606
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
M+++G+ P+ +T NV+ L + G+ + A M++R + PN TY L+DG
Sbjct: 607 KMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661
>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 574
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 158/342 (46%), Gaps = 57/342 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRI---LEAARLFKKLNVFCCDPNVITFNTLA---------LV 67
P++ T+N+LI G C G++ L K++ P+V+TFN L
Sbjct: 220 APSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYCKEPNITA 279
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNV 117
A+ +F+EM + G+ +VVT +++ GLC++G + D G+ + T+N
Sbjct: 280 AIKVFQEMRQQ-GI--PANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNS 336
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + K G M EA ++ + QR + PN TYNTL+DG+ A KG
Sbjct: 337 VLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKG 396
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+V +YN LI G+ R+ L EM +G++AD TYN L
Sbjct: 397 ISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVL-------------- 442
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I L G V +A+K+ + N +I+G C+ G + A +I + M+
Sbjct: 443 ---IGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEI-RLRME 498
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VVTYN+ + FCK G+ +AN +L +M E GL PN
Sbjct: 499 KRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPN 540
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 161/344 (46%), Gaps = 54/344 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
LL ++ + +P++VTFN LI G C E I A ++F+++ NV+T+N+L
Sbjct: 247 ALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGL 306
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
++ L EEM E G+ C + T ++++G CK G M++ +GM+
Sbjct: 307 CREGKVEDSIKLVEEM-EELGLAC--ILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMK 363
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----WWS---- 161
P+V+T N + D + GKM+EA + M + ++PN TYN L+ GF W S
Sbjct: 364 PNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGL 423
Query: 162 ------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KG + DV +YN+LI C V AV L EM+ G+ YNT+
Sbjct: 424 LDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTI------ 477
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I+G + G A ++ + K + T N + CK+G++ A
Sbjct: 478 -----------INGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEAN 526
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ + +++ GL P+ +TY I+ G ++G +G D+ +
Sbjct: 527 VVLNEMLEK-GLVPNRITYEIINSGMIEKGYVPDISGYAADVSK 569
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 127/286 (44%), Gaps = 46/286 (16%)
Query: 85 PDVVTCTNIIDGLCKDGFMMDQG----------MRPDVVTLNVMTDNLSKDG---KMEEA 131
PD+ T +I G CK G + G + P V T N + D K G KM
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 245
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
+ LL+ MIQ ++P+ T+N L++G+ +G +V +YN L++G
Sbjct: 246 DALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSG 305
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
C++ VED++ L EM G+ +T N++ +A + P+
Sbjct: 306 LCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPN 365
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y T +DG + G + EA A+ ++T NCLI G + +
Sbjct: 366 VITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLD 425
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ DVVTYN++I C +G+ +KA LL +M E GLEP
Sbjct: 426 E-MKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPK 470
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 41/237 (17%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
RP ++N + L + +++ A+ ++R V+P+ T+N ++ GF
Sbjct: 150 RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGD 209
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAV---SLCREMLSEGIRADATTYNT 208
AW G V +YN LI+GYCK V +L +EM+ GI D T+N
Sbjct: 210 VAKNISAW---GVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNV 266
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I+G K + A+KVF + + T N L+ GLC+
Sbjct: 267 L-----------------INGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCRE 309
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+++ + + M+ GL + T N +++GFCK+G +A G + + + G++PN
Sbjct: 310 GKVEDSIKLVEE-MEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPN 365
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 158/349 (45%), Gaps = 53/349 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+A +LGR+ N+V FN++I G EG++ EA L++ + + C P+ T++
Sbjct: 295 QADEARAMLGRVP----ELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYS 350
Query: 63 TL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMD-----QGMRPD 111
L L L V + K P+VVT T ++ CK+G D + M
Sbjct: 351 ILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 410
Query: 112 VVTLNVMTDN-----LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------- 158
+TLN N L KDG+M+EA L++ M + NP+ C+YNT++
Sbjct: 411 GLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEA 470
Query: 159 ------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+G + +YN +I+ +D +DAV L +EM+ G D +YN L
Sbjct: 471 EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKA 530
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
MA + P++ Y I L K V +A+++ + N
Sbjct: 531 MCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPD 590
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
I T N LI+GLCK+G + A ++ L N + PD++TYNI+I CK
Sbjct: 591 IVTYNTLINGLCKMGWMHAALNLLEKL-HNENVHPDIITYNILISWHCK 638
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 170/403 (42%), Gaps = 80/403 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL +L+ ++ TF+ +++G+C GR+ EAARL ++ C P V+T+
Sbjct: 224 GGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTY 283
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
L L + +E G + + +VV +I G +G + + +G +
Sbjct: 284 GFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQ 343
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW------ 160
PD T +++ L K G++ A LL M ++ PN TY ++ F W
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403
Query: 161 -----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
+KG + YN +I CKD +++A+ L +EM S+G D +YNT+ + N
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463
Query: 216 ------------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
V + Y T I L ++G +A+++ + H C L + +
Sbjct: 464 NEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVS 523
Query: 258 CNCLIDGLCKIG-----------------------------------RLKIAWDIFHMLM 282
N LI +CK G R++ A ++ ++
Sbjct: 524 YNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML 583
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PD+VTYN +I+G CK G A LL + + P+
Sbjct: 584 -NQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 152/350 (43%), Gaps = 58/350 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA+ LL + P+ V + ++I LC +G + EAA L ++ + C +V T
Sbjct: 188 LGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNT 247
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQG 107
F+ + A L + M+ + C P V+T ++ GLC+ D G
Sbjct: 248 FDDVVRGMCGLGRVREAARLVDRMMTKG---CMPGVMTYGFLLQGLCRVRQADEARAMLG 304
Query: 108 MRPD--VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
P+ VV N + +GK+ EA L E M G KGC+
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETM-----------------GL----KGCQ 343
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D ++Y+IL++G CK + AV L REM +G + TY +
Sbjct: 344 PDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M+ + +S Y I L K+G + EAM + + + C I + N +I LC
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+++ A +F L++ G+ + +TYN +IH ++G+ Q A L +M
Sbjct: 464 NEQMEEAEHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 60/279 (21%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL + T N +N +I LC +GR+ EA L +++ C+P++ ++NT+
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 461
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A ++FE ++ E GV+ + +T II L +DG D G
Sbjct: 462 CNNEQMEEAEHMFENLLEE-GVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 518
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
DVV+ N + + KDG ++ + LLE M ++ + PN
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNV--------------------- 557
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYNILI+ CK+R V DA+ L ++ML++G+ D TYNTL I+G
Sbjct: 558 SYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL-----------------ING 600
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L K G++ A+ + + N I T N LI CK+
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKV 639
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 42/297 (14%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM------RPDVVTLN 116
AL+L +++ FGV +P + ++ L + D + + M P T
Sbjct: 122 ALHLLDQLPRRFGV--QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFG 179
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
V L + G+ EA LL M + P+ Y T++
Sbjct: 180 VAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLM 239
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP----- 217
GC DV +++ ++ G C V +A L M+++G TY L + V
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299
Query: 218 -------PDSHV--YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +V + T I G G + EA +++ +G C T + L+ GLCK+
Sbjct: 300 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKL 359
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A + M+ G P+VVTY I++H FCK G LL +M GL N
Sbjct: 360 GRISSAVRLLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 36/222 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ + P++ ++N++I LC ++ EA +F+ L N IT+
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489
Query: 62 NTL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NT+ AL+ A+ L +EM+ C DVV+ +I +CKDG
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHG---CSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AW 159
M ++G++P+ V+ N++ L K+ ++ +A L + M+ + + P+ TYNTL++G W
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 160 W-----------SKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
++ D+ +YNILI+ +CK R ++DA L
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAML 648
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 59/329 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN ++ C EG + A +F + + P+V++FNTL
Sbjct: 127 ILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ K++EAN
Sbjct: 178 --MNGY--------IRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANE 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L M+ R + PN T+ TL+D +CK+ V+ A+ + ++
Sbjct: 228 LFNEMLDRGLVPNGVTFTTLIDV---------------------HCKNGMVDSAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+G D TYNTL M++N + PD YTT IDG K G
Sbjct: 267 MLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ A + + L L+ GLC+ GR A +F ++ + GL PD TY
Sbjct: 327 LETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREML-SVGLKPDNGTYT 385
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++I+ FCK+G + A+ LL +M+ G P
Sbjct: 386 MIINEFCKKGDVRTASRLLKEMQRDGHVP 414
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 19/176 (10%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+Y +NI+++ +CK+ + A S+ + G+R ++NTL
Sbjct: 136 LYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKS 195
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + V PD + Y+ I+GL K V EA ++F+ + + V T LID CK G
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNG 255
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A +I+ ++ G +PD++TYN +I+G CK+G ++ L+ +M GL+P+
Sbjct: 256 MVDSAMEIYKQMLSQ-GFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPD 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH +++Y +I+ C + + +A SL R ++S +G + + + + D +V+
Sbjct: 10 RHTLHTYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + ++GFV +A++ F HK + +TC +++ L K+ K+ WD + +++
Sbjct: 70 SGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCKEG+ ++A + + + GL P+
Sbjct: 130 -CGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPS 170
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 37/205 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA- 68
L +L PN VTF +LI C G + A ++K++ P++IT+NTL
Sbjct: 228 LFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLC 287
Query: 69 ----LNLFEEMVNEFGV-ICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L +++E + KPD +T T +IDG CK+G M+ + +R D V
Sbjct: 288 KKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNV 347
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ L ++G+ ++A + M+ + P+ T Y +
Sbjct: 348 AYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGT---------------------YTM 386
Query: 174 LINGYCKDRNVEDAVSLCREMLSEG 198
+IN +CK +V A L +EM +G
Sbjct: 387 IINEFCKKGDVRTASRLLKEMQRDG 411
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVEDAV 188
EA L+ +++ R + + G +KG R D+Y ++ L+ Y + V DA+
Sbjct: 31 EAKSLIRIVVSRKGKDSASAVFAAILG----TKGTQRSDIYVFSGLMTAYLESGFVHDAI 86
Query: 189 S---------------LCREMLSEGIRADATTYNTLFMAINN------VPPDSHVYTTYI 227
CR++L ++ Y L P + + +
Sbjct: 87 QCFRLTKKHKFWVPFDTCRKVLEHLMKLK---YFKLVWDFYKEILECGYPASLYFFNIVM 143
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
K G + A VF AI ++ + N L++G ++G L + + M G+
Sbjct: 144 HRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRL-KSAMHASGV 202
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV TY+++I+G CKE + +AN L +M + GL PN
Sbjct: 203 QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPN 240
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 156/353 (44%), Gaps = 54/353 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L TPN+ T+N L+ G++ A LF ++ P+V+T+
Sbjct: 149 GRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTY 208
Query: 62 NTL--AL-------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L AL A LF +M G C PD T + +++GL K G
Sbjct: 209 NILLDALCSAGRVGAARKLFHKMT---GDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFRE 265
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+D+G+ D+V N + L+K G M+ L++ M ++ +P+ ++NT+MD +K
Sbjct: 266 MVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANK 325
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC+ D+ SYNILI+ Y + + A + EM+ G + TYN+
Sbjct: 326 PDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNS 385
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I L +G V EA V + C + T N L+D L K
Sbjct: 386 L-----------------IHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKR 428
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G + A +F M++ G+ PD ++Y + I G + + +A L DM+ G
Sbjct: 429 GENQRAARLFQQ-MKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG 480
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 156/388 (40%), Gaps = 82/388 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEE 74
+P + F LI L G A ++KKL C + +N L L+ E
Sbjct: 62 SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121
Query: 75 MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
M E + +PD T +++ L K G M+++G+ P++ T N++ D
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K G+++ A L M +R P+ TYN L+D + GC D Y
Sbjct: 182 KVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+Y+ L+NG K VE+A + REM+ G+ D YN+L M
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PD+ + T +D L K A +VF+ + C + + N LID + G
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361
Query: 272 K------------------------IAW--------DIFHML--MQNPGLTPDVVTYNIM 297
I W + F +L M+ G PDVVTYN +
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRL 421
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ K G++Q+A L M++ G+EP+
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPD 449
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 148/385 (38%), Gaps = 87/385 (22%)
Query: 27 NSLIKGLCTEGR---ILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE----EMVNEF 79
N+L+K + GR +A LF + F C P V F L + +N E E+V +
Sbjct: 31 NTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKK 90
Query: 80 GVI--CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGK 127
V C+ D +I + G M +G PD T + + L K G+
Sbjct: 91 LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGR 150
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------------------- 162
++EA + M++R + PN TYN LMD F +
Sbjct: 151 VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210
Query: 163 ------------------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
GC D Y+Y+ L+NG K VE+A + REM+ G
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG 270
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D YN+L M+ PD+ + T +D L K A
Sbjct: 271 VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAR 330
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+VF+ + C + + N LID + G A + +++ G P+ TYN +IH
Sbjct: 331 EVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVE-AGFIPETKTYNSLIHW 389
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+GQ +A +L +ME G P+
Sbjct: 390 LATDGQVDEAFAVLEEMETAGCRPD 414
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ + F P+ +FN+++ L + A +F ++ C P++I++N L
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A A + EEMV E G I P+ T ++I L DG M G RP
Sbjct: 357 RFGDAAQARQMLEEMV-EAGFI--PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DVVT N + D L K G+ + A L + M + V P+T +Y +DG A+ +
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLF 473
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
GC D Y ILI + + E L E
Sbjct: 474 KDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHE 510
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 168/403 (41%), Gaps = 101/403 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P++ T+N+++ + + +L A ++ ++ C PN+ TF+ L AL +
Sbjct: 159 PDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQM 218
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+EM + P+ +T T II GLC+ M D G PD VT N +
Sbjct: 219 FDEMTQRRIL---PNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHG 275
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSKGCRH----D 167
K G+++EA LL+ + + Y+ L+DG W+ K H D
Sbjct: 276 FCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPD 335
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V Y I++ G K +DA+ L EM G+ D YN L
Sbjct: 336 VILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHL 395
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++ N+ + YT I G+ ++G V +A ++F+ + H C ++ T N LIDG CK G
Sbjct: 396 EISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAG 455
Query: 270 RLKIAWDIFH---------------------------------------------MLMQ- 283
++ A +F+ +LMQ
Sbjct: 456 NIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQL 515
Query: 284 -NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G P+++TYNI+IHGFCK G A L +++ GL P+
Sbjct: 516 TDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPD 558
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 156/384 (40%), Gaps = 62/384 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + + PN +T+ +I GLC + A RLF + C P+ +T+
Sbjct: 210 GKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTY 269
Query: 62 NTL------------ALVALNLFEE---MVNEFGVICKPD-VVTCTNIIDGLCKDGFMMD 105
N L AL L FE+ ++++ G C D + D M +
Sbjct: 270 NALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTE 329
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
++PDV+ +M LSK GK ++A LL M +R + P+T YN L+ G+
Sbjct: 330 HNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDE 389
Query: 158 --AWWSKGCRHDVYS----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ + ++D +S Y ILI G C+ V DA + EM G T+N L
Sbjct: 390 AKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALID 449
Query: 211 -----------------MAINNVPP-------------DSHVYTTYIDGLYKNGFVLEAM 240
M I P D+ T ++ L +G +L+A
Sbjct: 450 GFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAY 509
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + + I T N LI G CK G + A+ +F L Q GL+PD VTY +I+G
Sbjct: 510 NILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKEL-QLKGLSPDSVTYGTLING 568
Query: 301 FCKEGQHQKANGLLLDMEETGLEP 324
+ + A +L + + G P
Sbjct: 569 LLSANREEDAFTVLDQILKNGCTP 592
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 154/421 (36%), Gaps = 103/421 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL + P+ +N+LIKG C G + EA L +++ C + T+
Sbjct: 350 GKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTY 409
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
L LV A +F EM + G C P VVT +IDG CK G +
Sbjct: 410 TILICGMCRSGLVGDAQQIFNEM-EKHG--CYPSVVTFNALIDGFCKAGNIEKAQLLFYK 466
Query: 104 MDQGMRP--------------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+ G P D +L M + L G + +A +L + PN T
Sbjct: 467 MEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIIT 526
Query: 150 YNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YN L+ GF KG D +Y LING EDA ++ ++L
Sbjct: 527 YNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQIL 586
Query: 196 SEGIRADATTYNTLFMA------------------INNVP-PDSHV-------------- 222
G Y + FM + ++P DS V
Sbjct: 587 KNGCTPITEVYKS-FMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEKGEVE 645
Query: 223 --------------------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
YT ++ GL + G + EA+K+F + H ++T +C LI
Sbjct: 646 EAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLI 705
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
L K+G L +A +IF + + + ++ E + +A LL M+ G
Sbjct: 706 YRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGY 765
Query: 323 E 323
+
Sbjct: 766 D 766
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 143 VNPNTCTY------NTLM--DGFAWWSKGCRHDVY-SYNILINGYCKDRNVEDAVSLCRE 193
++P+ TY N+L+ F W SK R + S+N++I+ KD E + +E
Sbjct: 57 LSPSIVTYIIKNPPNSLLGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKE 116
Query: 194 MLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDGLYKNGF 235
+ G A + L A + PD Y T + + +
Sbjct: 117 IKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEV 176
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
VL A+ +++ + C+ I T + LIDG+CK G+ + A +F + Q L P+ +TY
Sbjct: 177 VLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRIL-PNKITYT 235
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+I G C+ + A L + M++ G P+
Sbjct: 236 IIISGLCQAQKADVAYRLFIAMKDHGCIPD 265
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 152/361 (42%), Gaps = 59/361 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P+ FN+L+ L G + +LF + PNV+T+ L AL++
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------MDQGMR------PDVVTLNVMT 119
+ M +C PDVV NI+DGLCK G + +++ MR P+ VT N +
Sbjct: 195 LDGMSGPESDVC-PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLA 253
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-----------------WSK 162
+ G + A L+ M + V PN T NT++ G W W +
Sbjct: 254 HAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPE 313
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP---- 218
R + +Y+ L+ + NV A+ L EM+ EG DA Y T+ +
Sbjct: 314 -ARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDA 372
Query: 219 --------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
D+ Y I G + + EA ++ + + T N L+ G
Sbjct: 373 WSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSG 432
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK G +A D M + G P VVT+ +IHG+CK GQ +A + M+E+G++P
Sbjct: 433 LCKAGDF-LAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQP 491
Query: 325 N 325
N
Sbjct: 492 N 492
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 144/342 (42%), Gaps = 58/342 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLAL---------VAL 69
P++V N+++ GLC GR+ +A + ++ +V C PN +T+N LA +A
Sbjct: 207 PDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMAC 266
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG--------FMMDQGMRPDV----VTLNV 117
L +M E P+ VT I+ GLC G F + + P+ VT +
Sbjct: 267 ELVAKMEKER---VTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYST 323
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW-------WS-------KG 163
+ + A L M+ +P+ Y T++ G WS G
Sbjct: 324 LVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAG 383
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ D +YNILI G+C+ + + +A L EM G++ D TYNTL
Sbjct: 384 FQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTL-------------- 429
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL K G L ++ + + C ++ T LI G CK+G++ A IF M
Sbjct: 430 ---LSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRS-MD 485
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P+ V YN +I CK A L +M E + N
Sbjct: 486 ESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPAN 527
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 141/325 (43%), Gaps = 56/325 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP--NVITFNTL--- 64
L+ ++ TPN VT N+++ GLC GR+ A F++ + N +T++TL
Sbjct: 268 LVAKMEKERVTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGA 327
Query: 65 ------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGM 108
VA+ LF EMV+E PD + +I GL + G + D G
Sbjct: 328 FLHTNNVGVAMELFHEMVDEGN---SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGF 384
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
+ D N++ + ++ EA LL M + + P+ TYNTL+ G
Sbjct: 385 QLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDE 444
Query: 158 ---AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
GCR V ++ LI+GYCK +++A+ + R M GI+ + YNTL
Sbjct: 445 LLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTL----- 499
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
ID L K+ A+++F + + T N L+ GL + A
Sbjct: 500 ------------IDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKA 547
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIH 299
+++ LM+ TPD VT +I++
Sbjct: 548 FELMD-LMREGRCTPDYVTIDILME 571
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 42/215 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + + + F + +N LI G C R+ EA L ++ P+V T+
Sbjct: 367 GRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTY 426
Query: 62 NTLALVALNLFEEMVNEFGVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
NTL +CK D + ++ G M+D G RP VVT +
Sbjct: 427 NTL--------------LSGLCKAGDFLAVDELL------GKMIDGGCRPSVVTFGTLIH 466
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
K G+++EA + M + + PNT YNTL+D CK
Sbjct: 467 GYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFL---------------------CK 505
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
R+ A+ L EM + + A+ TT+N L + +
Sbjct: 506 SRDTSLAIELFDEMREKHVPANVTTFNALLKGLRD 540
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + + LLG + + P++ T+N+L+ GLC G L L K+ C P+V+TF
Sbjct: 403 RLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFG 462
Query: 63 TLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFM 103
TL AL +F M +E G+ +P+ V +ID LCK M
Sbjct: 463 TLIHGYCKVGQIDEALRIFRSM-DESGI--QPNTVIYNTLIDFLCKSRDTSLAIELFDEM 519
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ + +V T N + L E+A L+++M + P+ T + LM+
Sbjct: 520 REKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILME 571
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S ADA + +A PPD+ + T +D L + G + ++F+++ + +
Sbjct: 113 SPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNV 172
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
T L+ GLCK GR+ A + M + PDVV N ++ G CK G+ Q+A
Sbjct: 173 VTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQA 228
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LLG+++ P++VTF +LI G C G+I EA R+F+ ++ PN + +NTL
Sbjct: 445 LLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLC 504
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG------MR----- 109
+A+ LF+EM + +V T ++ GL +D M ++ MR
Sbjct: 505 KSRDTSLAIELFDEMREKH---VPANVTTFNALLKGL-RDKNMPEKAFELMDLMREGRCT 560
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
PD VT++++ + L G+ + L+ +Q D P T
Sbjct: 561 PDYVTIDILMEWLPVIGETDR----LKHFMQHDTTPKRMT 596
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 163/346 (47%), Gaps = 67/346 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL R+ PN+V +N++I +C + +A L+ ++ P+V T+N L
Sbjct: 228 LLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNAL----- 282
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+N F ++ K + D + M + + PDV T N++ D K+G+++
Sbjct: 283 ------INGFCIVGK--------LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVK 328
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EA L +M+++ + P+ TYN+LMD + +G +V SY+I+I
Sbjct: 329 EAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMI 388
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
N +CK + V+ A+ L +EM + I + TY++L IDGL K+G
Sbjct: 389 NRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSL-----------------IDGLCKSGR 431
Query: 236 VLEAMKVFSAI---GNHKCVLTIE-------------TCNCLIDGLCKIGRLKIAWDIFH 279
+ A+++ + G ++T+ T LIDGLCK GRL+ A +IF
Sbjct: 432 ISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFE 491
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+ G V TY +MIHGFC +G +A LL M++ PN
Sbjct: 492 DLLVK-GYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPN 536
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 137/326 (42%), Gaps = 64/326 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L ++ P++ TFN L+ C EGR+ EA
Sbjct: 289 VGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAK----------------- 331
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRP 110
N LA M+ + G+ KPDVVT +++D C K F M +G+
Sbjct: 332 -NGLA---------MMMKQGI--KPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTA 379
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V + ++M + K +++A L + M + + PN TY++L+DG C+ S
Sbjct: 380 NVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGL------CKSGRIS 433
Query: 171 YNILINGYCKDRNVE-DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
Y + +N DR + D ++L R++ +GIR P+ YT IDG
Sbjct: 434 YALELNDEMHDRGQQPDIITLTRQLKDQGIR-----------------PNMFTYTILIDG 476
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G + +A +F + +T+ T +I G C G A + + N + P
Sbjct: 477 LCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCI-P 535
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLL 315
+ VTY I+I ++ KA +
Sbjct: 536 NAVTYEIIIRSLFDNDENDKAENFFV 561
>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
Length = 447
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 160/355 (45%), Gaps = 53/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S + RI C PN+ T+++L+ LC G+ EA L ++ C PNV+T+
Sbjct: 79 GKVSQALLHFRRIGEDC-APNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTY 137
Query: 62 NTL--ALVALNLFEEMV------NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---- 109
N L L +E++ ++ G C+ DV+T T I+D CK+ +D+ R
Sbjct: 138 NALIDGFRKLERLDEVLMLLKEMSQRG--CRADVITYTMILDIFCKNN-SIDEAYRLLNA 194
Query: 110 ---PDVVTLNVMTDNLS--KDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
+VVT N + LS + + EA LLE MIQ PN Y T++
Sbjct: 195 LEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLD 254
Query: 155 DGF----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ + + +S+GC+ D SY IL+ + D++ L ML G D T N +
Sbjct: 255 EAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVV- 313
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I K G + EA ++F ++ + + T N LI CK +
Sbjct: 314 ----------------IHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQ 357
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + H ++Q P+V+TYN +I FC+E + ++A G+ M + G P+
Sbjct: 358 PDTAVKLLHQMIQ-ADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPD 411
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 158/401 (39%), Gaps = 112/401 (27%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G+ L+ + N V++ L++G C G +A
Sbjct: 10 RHRDGYEFYRHRLLGSYAVNEVSYGILMQGFCKAGEFQQA-------------------- 49
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---------PDVV 113
L L +EM + GV +P+VV T II GLC G + + P+V
Sbjct: 50 ------LELLDEMKSN-GV--RPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNVY 100
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T + + D L K G+ EA L+ M+++ +PN TYN L+DGF
Sbjct: 101 TYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-- 217
+GCR DV +Y ++++ +CK+ ++++A L L+ + + TYN+LF A++
Sbjct: 161 SQRGCRADVITYTMILDIFCKNNSIDEAYRL----LNALEKRNVVTYNSLFTALSTAEGD 216
Query: 218 ------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC-------- 251
P+ Y T + L KN + EA +V ++ + C
Sbjct: 217 RTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYK 276
Query: 252 ---------------------------VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+L +T N +I CK G L A +F + Q
Sbjct: 277 ILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQR 336
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P VTYN +I FCK Q A LL M + +PN
Sbjct: 337 -GSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPN 376
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 33/248 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCT-EG-RILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
R+L + N+VT+NSL L T EG R EA L +K+ PN + + T+ L+
Sbjct: 190 RLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCK 249
Query: 71 ------LFEEMVNEFGVICKPDVVTCTNII----------DGLCKDGFMMDQGMRPDVVT 114
++ +++ + CK D V+ ++ D L G M+ G D T
Sbjct: 250 NSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKT 309
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
+NV+ K G + EA+ L + M QR P+ TYNTL+ F +
Sbjct: 310 MNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-PD 219
+ +V +YN +I +C+++ E+A + + M+ G D +Y TL ++ N D
Sbjct: 370 QADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTLKLSKNEAAIYD 429
Query: 220 SHVYTTYI 227
V+ TY+
Sbjct: 430 QKVHDTYL 437
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LLGR+L S + + T N +I C G + EA +LFK + P+ +T+
Sbjct: 286 GRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRGSIPSNVTY 345
Query: 62 NTLALVALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
NTL G CK PD T ++ + + F +P+V+T N +
Sbjct: 346 NTL--------------IGAFCKAQQPD--TAVKLLHQMIQADF------KPNVITYNSI 383
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
+ ++ + EEA + ++M+ P+ +Y TL
Sbjct: 384 IKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
LL +++ + F PN++T+NS+IK C E R EA +F+ + C P+ +++ TL L
Sbjct: 364 LLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTLKL 420
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 151/353 (42%), Gaps = 58/353 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
FVL I + TFN +++ LCT G+ + A L +++ PN +T+NT+
Sbjct: 100 AFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP----SPNAVTYNTVIA 155
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----------DGFMMDQ 106
+ + EM G+ PD T +I G CK D + +
Sbjct: 156 GFCARGRVQAGIEIMREMRERGGI--APDKYTYATVISGWCKVGKVEDATKVFDEMLTEG 213
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL-----MDGFAWWS 161
+ P+ V N + G +E A M+ R V+ TYN M+G A +
Sbjct: 214 KVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEA 273
Query: 162 ---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
KG D ++YNILINGYCK+ + A+ + M+ +GIRA TY +L
Sbjct: 274 HALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSL--- 330
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
I L G V E ++F+ + N LI+ C G +
Sbjct: 331 --------------IHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMD 376
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A++I M+ +TPD VTYN ++ G C G+ +A GL+ +M + G++P+
Sbjct: 377 RAFEIMGE-MEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPD 428
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 54/260 (20%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
+ T+N + L EGR EA L +++ P+ T+N L A+ +F
Sbjct: 253 TVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMF 312
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNL 122
E MV G + VVT T++I L G + + +G+RPD+ N + ++
Sbjct: 313 EVMV---GKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSH 369
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
G M+ A ++ M ++ + P+ TYNTLM G +G + D+
Sbjct: 370 CTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDL 429
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
SYN LI+GY +++DAV + EM+ +G TYN +
Sbjct: 430 VSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKE 489
Query: 211 MAINNVPPDSHVYTTYIDGL 230
M N + PD Y + I+GL
Sbjct: 490 MVGNGITPDDSTYISLIEGL 509
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 19/151 (12%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F ++G + TP+ VT+N+L++GLC GR+ EA L +++ P+++++NTL
Sbjct: 378 AFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLI- 436
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
G K D+ + D MM +G P ++T N M L +G
Sbjct: 437 ------------SGYSMKGDIKDAVKVRDE------MMGKGFNPTLLTYNAMIKGLCLNG 478
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +A L++ M+ + P+ TY +L++G
Sbjct: 479 QGGDAEDLVKEMVGNGITPDDSTYISLIEGL 509
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 152/328 (46%), Gaps = 54/328 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
P+++T+N ++ G+C EGR+ +A + L + +PN +++N + A
Sbjct: 13 APDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEK 72
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTD 120
L EEM ++ C P+VVT +I LC+ G +++Q G P+ ++ N +
Sbjct: 73 LMEEMAHKG---CPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLH 129
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
K KM++A +E+M+ R P+ +YNTL+ KGC
Sbjct: 130 AFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSP 189
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+ SYN +I+G K ++A+ L EM+S+G++ PD YTT
Sbjct: 190 VLISYNTVIDGLTKAGKTKEALELLDEMISKGLQ-----------------PDIITYTTI 232
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
GL + + EA++ F + + T+ N ++ GLCK A D+F ++ N G
Sbjct: 233 ASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISN-G 291
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLL 314
P+ TY I++ G EG ++A LL
Sbjct: 292 CMPNESTYTILVEGLAYEGLVKEARDLL 319
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 131/299 (43%), Gaps = 46/299 (15%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVM 118
+ L +EM ++ C PD++T +++G+C++G + D G P+ V+ N++
Sbjct: 1 MKLLDEMRDKG---CAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIV 57
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL-------------MDGFAWWSK-GC 164
L + E+A L+E M + PN T+N L M+ K GC
Sbjct: 58 LKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGC 117
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------- 213
+ SYN L++ +CK + ++ A++ M+S G D +YNTL A+
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAID 177
Query: 214 -------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
P Y T IDGL K G EA+++ + + I T + GLC
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLC 237
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ A F + Q+ G+ P VV YN ++ G CK + A L M G PN
Sbjct: 238 REDKIEEAIRTFCKV-QDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPN 295
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 60/246 (24%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL-------VALN 70
TPN +++N L+ C + ++ +A + + C P+++++NTL AL VA++
Sbjct: 118 TPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAID 177
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L ++ G C P +++ +IDGL K G M+ +G++PD++T +
Sbjct: 178 LLHQLK---GKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIAS 234
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L ++ K+EEA T+ + D G R V YN ++ G CK
Sbjct: 235 GLCREDKIEEA---------------IRTFCKVQD------MGIRPTVVLYNAILLGLCK 273
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
R +A+ L M+S G P+ YT ++GL G V EA
Sbjct: 274 RRETHNAIDLFSYMISNGCM-----------------PNESTYTILVEGLAYEGLVKEAR 316
Query: 241 KVFSAI 246
+ +
Sbjct: 317 DLLGQL 322
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ P+++T+ ++ GLC E +I EA R F K+ P V+ +
Sbjct: 205 GKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLY 264
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
N + L A++LF M++ C P+ T T +++GL +G + +
Sbjct: 265 NAILLGLCKRRETHNAIDLFSYMISNG---CMPNESTYTILVEGLAYEGLVKE 314
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 172/375 (45%), Gaps = 52/375 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R + GR+L + P++ ++N+LI G EG + +A LF K+ P+V+T
Sbjct: 135 MHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVT 194
Query: 61 FNTLALVALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------M 103
+N+L + L +EMV V+ +P+ T ++I G G M
Sbjct: 195 YNSL-IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEM 253
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
G+ P VV N L + +++EA + + M+ + PN +Y+TL+ G+A
Sbjct: 254 SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCF 313
Query: 159 ---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG + +NILIN Y + ++ A+ + +M ++G+ D T+ T+
Sbjct: 314 ANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATV 373
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M VPP VY I G +G +++A ++ S + N
Sbjct: 374 ISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDI 433
Query: 252 VLT-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ + +I+ L K GR+ DI +++Q G P+VVT+N ++ G+C G ++A
Sbjct: 434 PPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT-GQRPNVVTFNSLMEGYCLVGNMEEA 492
Query: 311 NGLLLDMEETGLEPN 325
LL M G+EPN
Sbjct: 493 FALLDAMASIGIEPN 507
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 148/342 (43%), Gaps = 61/342 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ VTF ++I LC GR+ +A F + P+ + L + A L
Sbjct: 365 PDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKEL 424
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EM+N+ I P V ++II+ L K+G M+ G RP+VVT N + +
Sbjct: 425 ISEMMNK--DIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEG 482
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
G MEEA LL+ M + PN Y TL+D GYCK+
Sbjct: 483 YCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVD---------------------GYCKN 521
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDS--------------HVY 223
++DA+++ R+ML +G++ + YN LF A Y
Sbjct: 522 GRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTY 581
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ GL +N EA + + I T N +I + K+GR + A ++F +
Sbjct: 582 GVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAI-S 640
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P V TYN+MI KE +++A+ L + +E++G P+
Sbjct: 641 TYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPD 682
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 67/299 (22%)
Query: 34 CTEGRILEAARLFKKLNVFCCD------PNVITFNTLALVALNLFEEMVNEFGVICKPDV 87
C++G L A LFK+++ + C P + T+N L ++ + + +P++
Sbjct: 93 CSDGPAL-AVELFKRMDRWACPHAAADAPTIYTYNIL-----------IDCYRRMHRPEL 140
Query: 88 VTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
L G ++ G+ PDV + N + D SK+G++++A L MI++ V+P+
Sbjct: 141 --------ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDV 192
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
TYN+L+DG CK + + + + +M+ GIR + TYN
Sbjct: 193 VTYNSLIDGL---------------------CKTKEMVKSERVLEQMVDAGIRPNNKTYN 231
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+L +Y G++K E+++VF + + + + CN I LC+
Sbjct: 232 SL------------IYGYSTAGMWK-----ESVRVFKEMSSSGLIPCVVNCNSFIHALCR 274
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R+K A DIF M+++ P P++++Y+ ++HG+ EG N L+ M G+ PN
Sbjct: 275 HNRIKEAKDIFDSMVLKGP--KPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 331
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 78/331 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + G ++ ++ + PN+VTFNSL++G C G + EA L + +PN +
Sbjct: 452 GRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 511
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
TL +DG CK+G M+ +G++P
Sbjct: 512 GTL-----------------------------VDGYCKNGRIDDALTVFRDMLHKGVKPT 542
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
V N++ L + + A + MI+ G + +Y
Sbjct: 543 SVLYNIILHGLFQARRTTAAKKMFHEMIE---------------------SGTTVSIQTY 581
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
+++ G C++ ++A L ++ + ++ D T+N + I +
Sbjct: 582 GVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIV-----------------ISAML 624
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G EA ++F+AI + V T+ T N +I L K + A ++F + ++ G PD
Sbjct: 625 KVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLF-ISVEKSGRAPDS 683
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
N ++ K+ + KA+ L ++E L
Sbjct: 684 RLLNHIVRMLLKKAEVAKASNYLSIIDENNL 714
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 147/328 (44%), Gaps = 58/328 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S G LL + S PN V +N++I LC EG+ +EA +L +K+ P+++TF
Sbjct: 202 GLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTF 261
Query: 62 N---------TLALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF------MMD 105
N L A +F +M ++E + KP+ VT +++G C +G + D
Sbjct: 262 NCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFD 321
Query: 106 QGMRPDVVTL---NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ ++L N+ L + GK+ EA+ +L M ++++ PN
Sbjct: 322 SMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPN---------------- 365
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+YSYNIL++G CK DA S+ M G V PD+
Sbjct: 366 -----LYSYNILVHGLCKYGMFSDARSILGLMRESG-----------------VAPDTVT 403
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+T + G + G +LEA V + C + TCN L+ L K GR A D+ M M
Sbjct: 404 YSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQM-M 462
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
G D VT N MI+G CK G KA
Sbjct: 463 NERGYGLDNVTCNTMINGLCKAGNLDKA 490
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 159/383 (41%), Gaps = 79/383 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNVITFN------------ 62
+P++VTFN I LC G+ILEA+R+F+ + + PN +T+N
Sbjct: 254 LSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMF 313
Query: 63 --------------TLALVALNLF-------------EEMVNEFGVI-CKPDVVTCTNII 94
TL+L + N++ ++NE KP++ + ++
Sbjct: 314 EEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILV 373
Query: 95 DGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GLCK G M + G+ PD VT + + + GK+ EAN +L MIQ
Sbjct: 374 HGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCF 433
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSY----------------NILINGYCKDRNVEDAV 188
PN T N L+ W +G + N +ING CK N++ A+
Sbjct: 434 PNMYTCNILLHSL--WKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAI 491
Query: 189 SLCREMLSEGIRADATTYNT---LFMAINNVP---PDSHVYTTYIDGLYKNGFVLEAMKV 242
+ M + G + N+ LF NN PDS Y T I GL K G V EA K
Sbjct: 492 EIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKK 551
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ K + I CK G+L A+ + M+ G + TYN +I G
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKE-MEKKGCNKSLRTYNSLIQGLG 610
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
E Q + GL+ +M+E G+ PN
Sbjct: 611 SENQIFEIYGLMDEMKERGIFPN 633
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 68/329 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P TFN LI LC G + A +F K++ C PN + L ++L
Sbjct: 151 PQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDL 210
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM + + P+ V +I LC +G M + G+ PD+VT N
Sbjct: 211 LDEMRSSGAL---PNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAA 267
Query: 122 LSKDGKMEEANCLLEVM-IQRDV---NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
L K G++ EA+ + M I ++ PNT TYN +++GF
Sbjct: 268 LCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGF-------------------- 307
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS-HVYTTYIDGLYKNGFV 236
C E + E RA +F ++ N S Y ++ GL ++G +
Sbjct: 308 -------------CSEGMFEEARA-------IFDSMKNSETLSLRSYNIWMLGLVRSGKL 347
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
LEA + + + + + N L+ GLCK G A I LM+ G+ PD VTY+
Sbjct: 348 LEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILG-LMRESGVAPDTVTYST 406
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HG+C+ G+ +AN +L +M + G PN
Sbjct: 407 LLHGYCRRGKILEANYVLREMIQVGCFPN 435
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 152/386 (39%), Gaps = 72/386 (18%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
+VL I + CF PNM T N L+ L EGR EA L + +N + +T NT+
Sbjct: 422 YVLREMIQVGCF-PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMING 480
Query: 65 ---------------------ALVALNLFEEMVNEF-----GVICKPDVVTCTNIIDGLC 98
+ NL ++ F G C PD +T II GLC
Sbjct: 481 LCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLC 540
Query: 99 KDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G M+ + + PD + + N K GK+ A +L+ M ++ N +
Sbjct: 541 KVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLR 600
Query: 149 TYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYN+L+ G +G +VY+YN +I+ + ++DA L EM
Sbjct: 601 TYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEM 660
Query: 195 LSEGIRADATTYNTLF-----------------MAINNVPPDSHVYTTYIDGLYKNGFVL 237
L +GI + T+ L +A++ +Y+ + L G L
Sbjct: 661 LQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETL 720
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A ++F A + L LI+ LCK G+L A I H +M + + D ++ +
Sbjct: 721 KAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMM-DKQYSFDPASFMPV 779
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLE 323
I K G A+ M E E
Sbjct: 780 IDELGKRGSKHAADEFAERMMEMASE 805
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPD 86
SL++ L G + A F+ L + F DP I+F L LF + E V C
Sbjct: 86 SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNL------LFRCSLKESRVDC--- 136
Query: 87 VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+ L KD M ++P T N++ L + G +E A + + M ++ PN
Sbjct: 137 -------VIWLYKD--MAVAKVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ L+ G+ S G + +YN +I+ C + +A L
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE 247
Query: 193 EMLSEGIRADATTYNTLFMAI---------------------NNVP-PDSHVYTTYIDGL 230
+M G+ D T+N A+ +P P++ Y ++G
Sbjct: 248 KMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGF 307
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G EA +F ++ N + L++ + N + GL + G+L A I + M + P+
Sbjct: 308 CSEGMFEEARAIFDSMKNSE-TLSLRSYNIWMLGLVRSGKLLEAHLILNE-MAEKNIKPN 365
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +YNI++HG CK G A +L M E+G+ P+
Sbjct: 366 LYSYNILVHGLCKYGMFSDARSILGLMRESGVAPD 400
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 163/339 (48%), Gaps = 47/339 (13%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEMVNEF 79
LI GLC + R+ +A ++ P+V++FN L VA + F M+ ++
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMI-KY 299
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
G++ PDV + ++ GLC G M + G+ PD+VT N++ + G +
Sbjct: 300 GLL--PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLIS 357
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
A +++ M+ +NP+ TY L+ G S+G + + +Y +L+
Sbjct: 358 GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL 417
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNT--------LF--MAINNVPPDSHVYTT 225
+ CK +++AV L EM G++ D TY+ L+ M + P+S V +
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSA 477
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I GL++ G + EA F ++ I N +IDG K+G + A + +++
Sbjct: 478 IISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEK- 536
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G++P +VT+N +I+GFCK+G+ +A LL ++ GL P
Sbjct: 537 GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVP 575
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 160/348 (45%), Gaps = 46/348 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG F L ++L ++VT+ L+ LC GRI EA L ++ V P+++T
Sbjct: 388 MGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLT 447
Query: 61 FNTLAL-VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVT----- 114
++ A+ A+ L+EEM ++ P+ C+ II GL + G + + M D VT
Sbjct: 448 YSRGAVEEAIELYEEMCSKR---IYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVA 504
Query: 115 -----LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------- 162
N+M D +K G + EA + +I++ ++P T+N+L+ GF K
Sbjct: 505 EEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKL 564
Query: 163 -------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
G +Y L+NGYC++ ++ + EM ++ I+
Sbjct: 565 LDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK--------------- 609
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P YT + GL K G + E++++ + T N +I CK L+ A+
Sbjct: 610 --PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAF 667
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ + ++Q+ L P VTYN++I+G C G + A+ LL+ +++ +
Sbjct: 668 QLHNQMLQH-SLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 714
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 160/381 (41%), Gaps = 78/381 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ ++N L+ GLC G + EA + +P+++T+N LA + + +
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILA-NGFRILGLISGAWK 361
Query: 81 VICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
V+ + PD+VT T +I G C+ G M+ QG++ +VT V+ +L
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYN--TLMDGFAWWSKGCRHDVYS----------- 170
K G+++EA LL M + P+ TY+ + + + + C +Y
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISG 481
Query: 171 ----------------------------YNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
YNI+I+GY K N+ +AV ++++ +GI
Sbjct: 482 LFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPT 541
Query: 203 ATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
T+N+L + ++ + P S YTT ++G + G + +
Sbjct: 542 IVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLH 601
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ T T ++ GLCK GRL + + M GL PD +TYN +I FCK
Sbjct: 602 EMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKY-MYARGLFPDQITYNTVIQSFCKA 660
Query: 305 GQHQKANGLLLDMEETGLEPN 325
QKA L M + L+P+
Sbjct: 661 HDLQKAFQLHNQMLQHSLQPS 681
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 55/328 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
+I+ +P +VTFNSLI G C +G++ EA +L + V P +T+ TL
Sbjct: 532 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 591
Query: 68 ALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
++ +M++E KP +T T ++ GLCK+G +M +G+ PD +T N
Sbjct: 592 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 651
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+ + K +++A L M+Q + P+ T YN+LIN
Sbjct: 652 TVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT---------------------YNVLIN 690
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G C N++DA L + + IR YTT I G V
Sbjct: 691 GLCVYGNLKDADRLLVTLQDQSIRLTKVA-----------------YTTIIKAHCAKGDV 733
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A+ F + ++I + +I+ LCK + A F M++ + G+ PD +
Sbjct: 734 QNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTH-GIPPDQDICLV 792
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEP 324
M++ F + G + M + GL P
Sbjct: 793 MLNAFHRSGDPNSVFEIFAMMIKCGLLP 820
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 123/286 (43%), Gaps = 53/286 (18%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVICKP-DVVTCTNIIDGL 97
+A + K+ V ++ T+N+L L ++ ++ NE P + T +IDGL
Sbjct: 186 DALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGL 245
Query: 98 CKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C+ + D + P VV+ N + K G ++ A +MI+ + P
Sbjct: 246 CRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLP-- 303
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
DVYSYNIL++G C ++E+A+ +M + G+ D TYN
Sbjct: 304 -------------------DVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYN 344
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M +N + PD YT I G + G + E+ K+ + +
Sbjct: 345 ILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQ 404
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
L+I T L+ LCK GR+ A + H M+ GL PD++TY+
Sbjct: 405 GLKLSIVTYTVLLSSLCKSGRIDEAVILLHE-MEVIGLKPDLLTYS 449
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 25/239 (10%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN---PNTCTYNTLMDGFAWWS 161
+ G R V+ +++ +++ G+ +E +L M++ + + P+ C L + F W
Sbjct: 108 EYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLC--ELLCNSFRDWD 165
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
+ +++L Y + V DA+ + +M ++ TYN+L
Sbjct: 166 L----NNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWD 221
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ + VP + + IDGL + + +A+ G + ++ + N L+ G C
Sbjct: 222 VYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFC 281
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+G + +A F M+++ GL PDV +YNI++HG C G ++A DME G+EP+
Sbjct: 282 KMGSVDVAKSFFCMMIKY-GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 49/326 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFE 73
F P++ +FN LI+GLC G I +A F+ + F C P+++++NTL + ++
Sbjct: 210 FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGH 269
Query: 74 EMVNEFGVI--CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+++ E +I PDV+T T+II G CK G M+ G++P+ T NV+ D
Sbjct: 270 DLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDG 329
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSKGCRH---D 167
K G M A + E M+ P+ T+ +L+DG+ W R+ +
Sbjct: 330 FGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
VY+Y +LIN CK+ + +A + R + S + V P +Y I
Sbjct: 390 VYTYAVLINALCKENRIREARNFLRHLKS-----------------SEVVPKPFIYNPVI 432
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K G V EA + + + KC T LI G C GR+ A F+ +++
Sbjct: 433 DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIE-INC 491
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGL 313
PD +T N +I K G +A+ +
Sbjct: 492 VPDEITINSLISCLLKAGMPNEASQI 517
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 34/249 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------- 161
PDV + N++ L + G++++A + M P+ +YNTL++GF +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271
Query: 162 -------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FM 211
KG DV +Y +I+GYCK +++ A L EM+S GI+ + T+N L F
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331
Query: 212 AINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ N+ PD +T+ IDG + G V + +K++ + +
Sbjct: 332 KVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVY 391
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T LI+ LCK R++ A + L ++ + P YN +I GFCK G+ +AN ++ +
Sbjct: 392 TYAVLINALCKENRIREARNFLRHL-KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450
Query: 317 MEETGLEPN 325
M+E P+
Sbjct: 451 MQEKKCRPD 459
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 38/240 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
+ G +L +L+ +P+++T+ S+I G C G + A+ LF ++ PN TFN
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325
Query: 64 L---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR----- 109
L A+ ++E+M+ + C PDVVT T++IDG C++G ++QG++
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKML---LLGCLPDVVTFTSLIDGYCREG-EVNQGLKLWEEM 381
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
P+V T V+ + L K+ ++ EA L + +V P YN ++DGF
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K CR D ++ ILI G C + +A+S +M+ D T N+L
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T +++ NL K G + A + + M + P++ L+ +A K
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
G + + YN L+N K V++AV L RE L D ++N L
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNIL---------- 220
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I GL + G + +A + F +GN C I + N LI+G C++ + D+
Sbjct: 221 -------IRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLK 273
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G++PDV+TY +I G+CK G + A+ L +M +G++PN
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPN 319
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G V+ ++L+ P++VTF SLI G C EG + + +L++++ V PNV T
Sbjct: 333 VGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYT 392
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVT----CTNIIDGLCKDGF----------MM 104
+ L AL N E N + +VV +IDG CK G M
Sbjct: 393 YAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQ 452
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ RPD +T ++ G+M EA MI+ + P+ T N+L+
Sbjct: 453 EKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLIS 503
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 147/328 (44%), Gaps = 58/328 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S G LL + S PN V +N++I LC EG+ +EA +L +K+ P+++TF
Sbjct: 202 GLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTF 261
Query: 62 N---------TLALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF------MMD 105
N L A +F +M ++E + KP+ VT +++G C +G + D
Sbjct: 262 NCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFD 321
Query: 106 QGMRPDVVTL---NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+ ++L N+ L + GK+ EA+ +L M ++++ PN
Sbjct: 322 SMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPN---------------- 365
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
+YSYNIL++G CK DA S+ M G V PD+
Sbjct: 366 -----LYSYNILVHGLCKYGMFSDARSILGLMRESG-----------------VAPDTVT 403
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+T + G + G +LEA V + C + TCN L+ L K GR A D+ M M
Sbjct: 404 YSTLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQM-M 462
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
G D VT N MI+G CK G KA
Sbjct: 463 NERGYGLDNVTCNTMINGLCKAGNLDKA 490
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 159/383 (41%), Gaps = 79/383 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPNVITFN------------ 62
+P++VTFN I LC G+ILEA+R+F+ + + PN +T+N
Sbjct: 254 LSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMF 313
Query: 63 --------------TLALVALNLF-------------EEMVNEFGVI-CKPDVVTCTNII 94
TL+L + N++ ++NE KP++ + ++
Sbjct: 314 EEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILV 373
Query: 95 DGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GLCK G M + G+ PD VT + + + GK+ EAN +L MIQ
Sbjct: 374 HGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCF 433
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSY----------------NILINGYCKDRNVEDAV 188
PN T N L+ W +G + N +ING CK N++ A+
Sbjct: 434 PNMYTCNILLHSL--WKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAI 491
Query: 189 SLCREMLSEGIRADATTYNT---LFMAINNVP---PDSHVYTTYIDGLYKNGFVLEAMKV 242
+ M + G + N+ LF NN PDS Y T I GL K G V EA K
Sbjct: 492 EIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKK 551
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ K + I CK G+L A+ + M+ G + TYN +I G
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKE-MEKKGCNKSLRTYNSLIQGLG 610
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
E Q + GL+ +M+E G+ PN
Sbjct: 611 SENQIFEIYGLMDEMKERGIFPN 633
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 68/329 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P TFN LI LC G + A +F K++ C PN + L ++L
Sbjct: 151 PQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDL 210
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
+EM + + P+ V +I LC +G M + G+ PD+VT N
Sbjct: 211 LDEMRSSGAL---PNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAA 267
Query: 122 LSKDGKMEEANCLLEVM-IQRDV---NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
L K G++ EA+ + M I ++ PNT TYN +++GF
Sbjct: 268 LCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGF-------------------- 307
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS-HVYTTYIDGLYKNGFV 236
C E + E RA +F ++ N S Y ++ GL ++G +
Sbjct: 308 -------------CSEGMFEEARA-------IFDSMKNSETLSLRSYNIWMLGLVRSGKL 347
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
LEA + + + + + N L+ GLCK G A I LM+ G+ PD VTY+
Sbjct: 348 LEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILG-LMRESGVAPDTVTYST 406
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HG+C+ G+ +AN +L +M + G PN
Sbjct: 407 LLHGYCRRGKILEANYVLREMIQVGCFPN 435
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 152/386 (39%), Gaps = 72/386 (18%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--- 64
+VL I + CF PNM T N L+ L EGR EA L + +N + +T NT+
Sbjct: 422 YVLREMIQVGCF-PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMING 480
Query: 65 ---------------------ALVALNLFEEMVNEF-----GVICKPDVVTCTNIIDGLC 98
+ NL ++ F G C PD +T II GLC
Sbjct: 481 LCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLC 540
Query: 99 KDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
K G M+ + + PD + + N K GK+ A +L+ M ++ N +
Sbjct: 541 KVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLR 600
Query: 149 TYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
TYN+L+ G +G +VY+YN +I+ + ++DA L EM
Sbjct: 601 TYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEM 660
Query: 195 LSEGIRADATTYNTLF-----------------MAINNVPPDSHVYTTYIDGLYKNGFVL 237
L +GI + T+ L +A++ +Y+ + L G L
Sbjct: 661 LQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETL 720
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A ++F A + L LI+ LCK G+L A I H +M + + D ++ +
Sbjct: 721 KAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMM-DKQYSFDPASFMPV 779
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLE 323
I K G A+ M E E
Sbjct: 780 IDELGKRGSKHAADEFAERMMEMASE 805
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)
Query: 28 SLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPD 86
SL++ L G + A F+ L + F DP I+F L LF + E V C
Sbjct: 86 SLVRTLADLGLLENAISQFRSLRDRFPHDPPPISFYNL------LFRCSLKESRVDC--- 136
Query: 87 VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+ L KD M ++P T N++ L + G +E A + + M ++ PN
Sbjct: 137 -------VIWLYKD--MAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ L+ G+ S G + +YN +I+ C + +A L
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE 247
Query: 193 EMLSEGIRADATTYNTLFMAI---------------------NNVP-PDSHVYTTYIDGL 230
+M G+ D T+N A+ +P P++ Y ++G
Sbjct: 248 KMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGF 307
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G EA +F ++ N + L++ + N + GL + G+L A I + M + P+
Sbjct: 308 CSEGMFEEARAIFDSMKNSE-TLSLRSYNIWMLGLVRSGKLLEAHLILNE-MAEKNIKPN 365
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +YNI++HG CK G A +L M E+G+ P+
Sbjct: 366 LYSYNILVHGLCKYGMFSDARSILGLMRESGVAPD 400
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 162/347 (46%), Gaps = 55/347 (15%)
Query: 29 LIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEMVNEF 79
LI GLC + R+ +A ++ P+V++FN L VA + F M+ ++
Sbjct: 241 LIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMI-KY 299
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
G++ PDV + ++ GLC G M + G+ PD+VT N++ + G +
Sbjct: 300 GLL--PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLIS 357
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
A +++ M+ +NP+ TY L+ G S+G + + +Y +L+
Sbjct: 358 GAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLL 417
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+ CK +++AV L EM G++ D TY+ L M +
Sbjct: 418 SSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIY 477
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+S V + I GL++ G + EA F ++ I N +IDG K+G + A
Sbjct: 478 PNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRS 537
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ +++ G++P +VT+N +I+GFCK+G+ +A LL ++ GL P
Sbjct: 538 YKQIIEK-GISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVP 583
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 48/353 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG F L ++L ++VT+ L+ LC GRI EA L ++ V P+++T
Sbjct: 388 MGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLT 447
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMDQGMRPDVVT 114
++ L L EE + + +C P+ C+ II GL + G + + M D VT
Sbjct: 448 YSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVT 507
Query: 115 ----------LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
N+M D +K G + EA + +I++ ++P T+N+L+ GF K
Sbjct: 508 KSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLA 567
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
G +Y L+NGYC++ ++ + EM ++ I+
Sbjct: 568 EAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK---------- 617
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
P YT + GL K G + E++++ + T N +I CK
Sbjct: 618 -------PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHD 670
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
L+ A+ + + ++Q+ L P VTYN++I+G C G + A+ LL+ +++ +
Sbjct: 671 LQKAFQLHNQMLQH-SLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIR 722
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 72/367 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG + ++ R+L++ P++VT+ LI G C G I E+ +L +K+
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKM----------- 401
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRP 110
K +VT T ++ LCK G + + G++P
Sbjct: 402 ------------------LSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKP 443
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW 160
D++T +V+ L K G +EEA L E M + + PN+ + ++ G ++
Sbjct: 444 DLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYF 503
Query: 161 SKGCRHDVYS----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ DV YNI+I+GY K N+ +AV ++++ +GI T+N+L
Sbjct: 504 DSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKK 563
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ ++ + P S YTT ++G + G + + + T T
Sbjct: 564 GKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITY 623
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
++ GLCK GRL + + M GL PD +TYN +I FCK QKA L M
Sbjct: 624 TVVVKGLCKEGRLHESVQLLKY-MYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQML 682
Query: 319 ETGLEPN 325
+ L+P+
Sbjct: 683 QHSLQPS 689
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 53/316 (16%)
Query: 41 EAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVICKP-DVVTCTNIIDGL 97
+A + K+ V ++ T+N+L L ++ ++ NE P + T +IDGL
Sbjct: 186 DALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGL 245
Query: 98 CKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C+ + D + P VV+ N + K G ++ A +MI+ + P
Sbjct: 246 CRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLP-- 303
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
DVYSYNIL++G C ++E+A+ +M + G+ D TYN
Sbjct: 304 -------------------DVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYN 344
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M +N + PD YT I G + G + E+ K+ + +
Sbjct: 345 ILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQ 404
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
L+I T L+ LCK GR+ A + H M+ GL PD++TY+++IHG CK G ++
Sbjct: 405 GLKLSIVTYTVLLSSLCKSGRIDEAVILLHE-MEVIGLKPDLLTYSVLIHGLCKRGAVEE 463
Query: 310 ANGLLLDMEETGLEPN 325
A L +M + PN
Sbjct: 464 AIELYEEMCSKRIYPN 479
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 55/328 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALV 67
+I+ +P +VTFNSLI G C +G++ EA +L + V P +T+ TL
Sbjct: 540 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 599
Query: 68 ALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLN 116
++ +M++E KP +T T ++ GLCK+G +M +G+ PD +T N
Sbjct: 600 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 659
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+ + K +++A L M+Q + P+ T YN+LIN
Sbjct: 660 TVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVT---------------------YNVLIN 698
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G C N++DA L + + IR YTT I G V
Sbjct: 699 GLCVYGNLKDADRLLVTLQDQSIRLTKVA-----------------YTTIIKAHCAKGDV 741
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A+ F + ++I + +I+ LCK + A F M++ + G+ PD +
Sbjct: 742 QNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTH-GIPPDQDICLV 800
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEP 324
M++ F + G + M + GL P
Sbjct: 801 MLNAFHRSGDPNSVFEIFAMMIKCGLLP 828
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 25/239 (10%)
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN---PNTCTYNTLMDGFAWWS 161
+ G R V+ +++ +++ G+ +E +L M++ + + P+ C L + F W
Sbjct: 108 EYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLC--ELLCNSFRDWD 165
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
+ +++L Y + V DA+ + +M ++ TYN+L
Sbjct: 166 L----NNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWD 221
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ + VP + + IDGL + + +A+ G + ++ + N L+ G C
Sbjct: 222 VYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFC 281
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+G + +A F M+++ GL PDV +YNI++HG C G ++A DME G+EP+
Sbjct: 282 KMGSVDVAKSFFCMMIKY-GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPD 339
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 157/358 (43%), Gaps = 61/358 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVIT 60
G+ SGG + P++V +N+LI GLC GR E L +++ + C P+ IT
Sbjct: 369 GKESGGISV-------SVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTIT 421
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMM 104
+N L LF+EM N+ GV P+VVT ++ G+C+ G F +
Sbjct: 422 YNCLIDGFCKAGEIEKGKELFDEM-NKEGV--APNVVTVNTLVGGMCRTGRVSSAVNFFV 478
Query: 105 D---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ +GM+ D VT + + E+A L M++ +P+ Y TL+ GF+
Sbjct: 479 EAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAG 538
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G R D YN LI G+C+ + +EM G++ D TYN
Sbjct: 539 RMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYN 598
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
TL Y + KNG + A KV + V T+ T +I+ C
Sbjct: 599 TLI-----------AYAS------KNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCL 641
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G A +IF + + P+ V YNI+I+ CK + + A L+ DM+ G+ PN
Sbjct: 642 NGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPN 699
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 32/222 (14%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G + N + L+++G N L+E M++ D+ PN
Sbjct: 296 MIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPN---------------- 339
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V ++ ILIN CK R V+DA+ + +M S G + + +V PD +
Sbjct: 340 -----VVTFGILINHMCKFRRVDDALEVLEKM-SGGKESGGISV--------SVEPDVVI 385
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T IDGL K G E + + + + K C T NCLIDG CK G ++ ++F
Sbjct: 386 YNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE- 444
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
M G+ P+VVT N ++ G C+ G+ A ++ + G++
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 111/281 (39%), Gaps = 68/281 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKK------------- 48
G G L + PN+VT N+L+ G+C GR+ A F +
Sbjct: 433 GEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTY 492
Query: 49 ---LNVFC-------------------CDPNVITFNTLALVALNLFEEMVNEFGVIC--- 83
+N FC C P+ I + TL + + M + V+
Sbjct: 493 TALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTL-ISGFSQAGRMADASFVLAELK 551
Query: 84 ----KPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
+PD V +I G C+ + F M + G++PD +T N + SK+G ++
Sbjct: 552 KLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLK 611
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH---------------DVYSYNIL 174
A ++ MI+ V P TY +++ + G + YNIL
Sbjct: 612 FAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNIL 671
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
IN CK+ V+ AVSL +M G+ + TTYN +F + +
Sbjct: 672 INSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRD 712
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV 67
F +L + + P+ +T+N+LI G + A ++ +K+ P V T+ +
Sbjct: 579 FEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINA 638
Query: 68 ---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-------GFMMDQ---GM 108
A+ +F++M V P+ V +I+ LCK+ M D G+
Sbjct: 639 YCLNGNGNEAMEIFKDMKAASKV--PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGV 696
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
P+ T N + L + +E+ ++ MI+ NP+ T L + W S
Sbjct: 697 TPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE---WLS 746
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 168/353 (47%), Gaps = 50/353 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P++V +N+++ G GRI E L+K + C V+++N L L +E ++
Sbjct: 297 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAIS 355
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------QGMRPDVVTL--NVMTDNLS 123
+ ++ C D +T ++ GLCK+G++ + R D+ T + M + L
Sbjct: 356 IWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 415
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
++G+++E +L+ M + PN N +++GF SK GC V
Sbjct: 416 REGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV 475
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAIN----- 214
+YN LING K +A +L +EML +G + + TY+ L MA+N
Sbjct: 476 TYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 535
Query: 215 ---NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD ++ I GL +G V +A++++S + CV + T N L++G K+
Sbjct: 536 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDF 595
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A I+ ++Q GL PD+++YNI + G C + A G L D + G+ P
Sbjct: 596 ERASKIWDHILQY-GLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP 647
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 57/355 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNVITFNTL--ALVALN 70
IL F P +V ++ K + +A +F++++ +F C P + ++N+L AL+ N
Sbjct: 49 ILKRLFDPKLVA-HAYAKNSMPD----QALDIFQRMHEIFGCQPGIRSYNSLLNALIESN 103
Query: 71 LFEEMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
++E + F P++ T +I C+ +M QG PDV +
Sbjct: 104 KWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYG 163
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK---- 162
+ ++L+K+G M +A L + M +R V P+ YN L+DGF W +
Sbjct: 164 TLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG 223
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
++ SYN++ING CK +++ + M D TY+TL
Sbjct: 224 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 283
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
MA N V PD VY T ++G + G + E ++++ + C T+ + N LI
Sbjct: 284 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIR 342
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
GL + ++ A I+ +L + D +TY +++HG CK G KA +L + E
Sbjct: 343 GLFENAKVDEAISIWELLPEK-DCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 396
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 162/358 (45%), Gaps = 55/358 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P++ ++ +LI L G + +A +LF ++ P+V +N L L A
Sbjct: 155 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 214
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMRP-----DVVTLNVMT 119
++E ++ G P++ + +I+GLCK + F + M+ D+ T + +
Sbjct: 215 EIWERLLK--GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLI 272
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWW----SKGCR 165
L G ++ A + + M + V+P+ YNT+++G+ W +GCR
Sbjct: 273 HGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR 332
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
V SYNILI G ++ V++A+S+ + + AD+ TY L +
Sbjct: 333 -TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSI 391
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
D+ Y++ I+GL + G + E V + H C CN +I+G +
Sbjct: 392 LEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVR 451
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+L+ A F M + G P VVTYN +I+G K + +A L+ +M + G +PN
Sbjct: 452 ASKLEDALRFFGN-MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPN 508
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 51/291 (17%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
++S+I GLC EGR+ E A + ++ C PN N + +N F
Sbjct: 406 AYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAV-----------INGF----- 449
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
V + + D L G M+ +G P VVT N + + LSK + EA L++ M+Q+
Sbjct: 450 ---VRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWK 506
Query: 145 PNTCTYNTLMDGF-----------AW---WSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
PN TY+ LM+G W KG + DV +NI+I+G C VEDA+ L
Sbjct: 507 PNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQL 566
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM + T+NTL ++G YK A K++ I +
Sbjct: 567 YSEMKQRNCVPNLVTHNTL-----------------MEGFYKVRDFERASKIWDHILQYG 609
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
I + N + GLC R+ A + + G+ P +T+NI++ G+
Sbjct: 610 LQPDIISYNITLKGLCSCHRISDAVGFLNDAVDR-GVLPTAITWNILVQGY 659
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 94/412 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAA----RLFKKLNVFCCDPN 57
G S L + TP++ +N LI G +G IL A+ RL K +V+ PN
Sbjct: 173 GYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVY---PN 229
Query: 58 VITFNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG---------- 101
+ ++N + L F+E + + K D+ T + +I GLC G
Sbjct: 230 IPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 289
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M + G+ PDVV N M + + G++EE L +VM +++ +YN L+ G
Sbjct: 290 EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVM-EKEGCRTVVSYNILIRGLFENA 348
Query: 158 ------AWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-- 205
+ W K C D +Y +L++G CK+ + A+S+ E +E R D T
Sbjct: 349 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE--AENGRGDLDTFA 406
Query: 206 YNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y+++ M + P+ +V I+G + + +A++ F +
Sbjct: 407 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMV 466
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN----------------------- 284
+ C T+ T N LI+GL K R A+ + ++Q
Sbjct: 467 SKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLD 526
Query: 285 -----------PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDV +NI+IHG C G+ + A L +M++ PN
Sbjct: 527 MALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPN 578
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 94/216 (43%), Gaps = 54/216 (25%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVN 77
CF P +VT+N+LI GL R EA L K++ PN+IT++ L
Sbjct: 470 CF-PTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL------------- 515
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGK 127
++GLC+ + +++G +PDV N++ L GK
Sbjct: 516 ----------------MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGK 559
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVYSYNI 173
+E+A L M QR+ PN T+NTLM+GF W G + D+ SYNI
Sbjct: 560 VEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNI 619
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ G C + DAV + + G+ A T+N L
Sbjct: 620 TLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNIL 655
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
+ L F P++ N +I GLC+ G++ +A +L+ ++ C PN++T NTL
Sbjct: 534 QALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLME------ 587
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
G D + I D ++ G++PD+++ N+ L ++ +A
Sbjct: 588 -------GFYKVRDFERASKIWD------HILQYGLQPDIISYNITLKGLCSCHRISDAV 634
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF 157
L + R V P T+N L+ G+
Sbjct: 635 GFLNDAVDRGVLPTAITWNILVQGY 659
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 232 KNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
KN +A+ +F + C I + N L++ L + + A + F + + GL+P+
Sbjct: 65 KNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEA-ESFFLYFETMGLSPN 123
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYNI+I C++ Q KA LL M G P+
Sbjct: 124 LQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPD 158
>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 70/335 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
++V +N++I GLC + + +A L+ ++ P+V TFN+L + + ++ + FG
Sbjct: 15 SDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSL-IYGFCIIGQLKDAFG 73
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
+ + M+ + + P V T ++ D L K+GKM+EA ++ +M++
Sbjct: 74 LFSQ------------------MVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMK 115
Query: 141 RDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVED 186
V PN TY ++M+G+ ++ G + SYNI+ING+CK + V +
Sbjct: 116 DGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNE 175
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A+ L +EM GI TY++L IDGL K+ + + +
Sbjct: 176 ALILFKEMCCRGIVPITVTYSSL-----------------IDGLCKSTMLGSLLMRCMLM 218
Query: 247 GNHKCVLTIETCNCLIDGLCKI----------------GRLKIAWDIFHMLMQNPGLTPD 290
NH L ID LCK GRLK A D+F L+ G + +
Sbjct: 219 VNH---LIYPLTVLYIDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLIK-GYSLN 274
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ TYNIMI+G CKEG +A LL M++ G+ P+
Sbjct: 275 IQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPD 309
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V D +Y T IDGL K+ V +A +++S + K + T N LI G C IG+LK A+
Sbjct: 13 VNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAF 72
Query: 276 DIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M+++N + P V T+ I++ G CKEG+ ++A ++ M + G+ PN
Sbjct: 73 GLFSQMVLKN--INPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPN 121
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 28/225 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++ ++ PN+VT+ S+++G C + + +F+ ++ PN ++
Sbjct: 101 GKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSY 160
Query: 62 N-------TLALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--- 109
N + +V AL LF+EM G++ P VT +++IDGLCK + MR
Sbjct: 161 NIMINGFCKIKIVNEALILFKEMCCR-GIV--PITVTYSSLIDGLCKSTMLGSLLMRCML 217
Query: 110 ---PDVVTLNVM-TDNLSKDGKMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFAWWSKG 163
+ L V+ D L K +++A L++ + R N + L+ G++
Sbjct: 218 MVNHLIYPLTVLYIDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQDLLIKGYSL---- 273
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++ +YNI+ING CK+ ++A +L +M GI DA TY T
Sbjct: 274 ---NIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYET 315
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 55/333 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
N+V FN++I G EG++ EA L++ + + C P+ T++ L A+ L
Sbjct: 294 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 353
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLNVMTDN-----L 122
EM + P+VVT T ++ CK+G D + M +TLN N L
Sbjct: 354 REMEKKG---FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 410
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDV 168
KDG+M+EA L++ M + NP+ C+YNT++ +G +
Sbjct: 411 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 470
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN +I+ +D +DAV L +EM+ G D +YN L
Sbjct: 471 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 530
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
MA + P++ Y I L K V +A+++ + N I T N LI+GLCK+G
Sbjct: 531 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 590
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ A ++ L N + PD++TYNI+I CK
Sbjct: 591 MHAALNLLEKL-HNENVHPDIITYNILISWHCK 622
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 81/391 (20%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP----------------- 56
+LM C ++ TF+ +++G+C GR+ EAARL ++ C P
Sbjct: 221 LLMGCAA-DVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 279
Query: 57 --------------NVITFNT-----LALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDG 96
NV+ FNT LA L E+ G+ C+PD T + ++ G
Sbjct: 280 ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 339
Query: 97 LCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
LCK G M +G P+VVT ++ + K+G ++ LLE M + + N
Sbjct: 340 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 399
Query: 147 TCTYNTLM-----DGF---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ YN ++ DG S+GC D+ SYN +I C + +E+A +
Sbjct: 400 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 459
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+L EG+ A+ TYNT+ M ++ D Y I + K+G
Sbjct: 460 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 519
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V ++ + + + N LI LCK R++ A ++ ++ N GL PD+VTY
Sbjct: 520 NVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAPDIVTY 578
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +I+G CK G A LL + + P+
Sbjct: 579 NTLINGLCKMGWMHAALNLLEKLHNENVHPD 609
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 60/279 (21%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL + T N +N +I LC +GR+ EA L +++ C+P++ ++NT+
Sbjct: 386 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 445
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A ++FE ++ E GV+ + +T II L +DG D G
Sbjct: 446 CNNEQMEEAEHMFENLLEE-GVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 502
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
DVV+ N + + KDG ++ + LLE M ++ + PN
Sbjct: 503 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNV--------------------- 541
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYNILI+ CK+R V DA+ L ++ML++G+ D TYNTL I+G
Sbjct: 542 SYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL-----------------ING 584
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L K G++ A+ + + N I T N LI CK+
Sbjct: 585 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKV 623
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 151/350 (43%), Gaps = 58/350 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA LL + P+ V + ++I LC +G + EAA L ++ + C +V T
Sbjct: 172 LGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNT 231
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQG 107
F+ + A L + M+ + C P V+T ++ GLC+ D G
Sbjct: 232 FDDVVRGMCGLGRVREAARLVDRMMTKG---CMPGVMTYGFLLQGLCRVRQADEARAMLG 288
Query: 108 MRPD--VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
P+ VV N + +GK+ EA L E M G KGC+
Sbjct: 289 RVPELNVVLFNTVIGGCLAEGKLAEATELYETM-----------------GL----KGCQ 327
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D ++Y+IL++G CK + AV L REM +G + TY +
Sbjct: 328 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 387
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M+ + +S Y I L K+G + EAM + + + C I + N +I LC
Sbjct: 388 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 447
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+++ A +F L++ G+ + +TYN +IH ++G+ Q A L +M
Sbjct: 448 NEQMEEAEHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEM 496
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 62/302 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P TF + LC GR EA L + + C P+ + + T+ + ++ G
Sbjct: 157 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTV-------IHALCDQGG 209
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
V + T N M+ G DV T + + + G++ EA L++ M+
Sbjct: 210 VT---EAATLLN---------EMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMM- 256
Query: 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
+KGC V +Y L+ G C+ R ++A R ML
Sbjct: 257 --------------------TKGCMPGVMTYGFLLQGLCRVRQADEA----RAMLGRVPE 292
Query: 201 ADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+ +NT+ I G G + EA +++ +G C T +
Sbjct: 293 LNVVLFNTV-----------------IGGCLAEGKLAEATELYETMGLKGCQPDAHTYSI 335
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ GLCK+GR+ A + M+ G P+VVTY I++H FCK G LL +M
Sbjct: 336 LMHGLCKLGRIGSAVRLLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAK 394
Query: 321 GL 322
GL
Sbjct: 395 GL 396
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 36/203 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P++ ++N++I LC ++ EA +F+ L N IT+NT+ AL+ A+ L
Sbjct: 433 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 492
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM+ C DVV+ +I +CKDG M ++G++P+ V+ N++
Sbjct: 493 AKEMILHG---CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISE 549
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHD 167
L K+ ++ +A L + M+ + + P+ TYNTL++G W ++ D
Sbjct: 550 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 609
Query: 168 VYSYNILINGYCKDRNVEDAVSL 190
+ +YNILI+ +CK R ++DA L
Sbjct: 610 IITYNILISWHCKVRLLDDAAML 632
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L ++L P++VT+N+LI GLC G + A L +KL+ P++IT+N
Sbjct: 555 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 614
Query: 63 TL 64
L
Sbjct: 615 IL 616
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 55/333 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLF 72
N+V FN++I G EG++ EA L++ + + C P+ T++ L A+ L
Sbjct: 310 NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMRPDVVTLNVMTDN-----L 122
EM + P+VVT T ++ CK+G D + M +TLN N L
Sbjct: 370 REMEKKG---FAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 426
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDV 168
KDG+M+EA L++ M + NP+ C+YNT++ +G +
Sbjct: 427 CKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN +I+ +D +DAV L +EM+ G D +YN L
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
MA + P++ Y I L K V +A+++ + N I T N LI+GLCK+G
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ A ++ L N + PD++TYNI+I CK
Sbjct: 607 MHAALNLLEKL-HNENVHPDIITYNILISWHCK 638
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 81/391 (20%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP----------------- 56
+LM C ++ TF+ +++G+C GR+ EAARL ++ C P
Sbjct: 237 LLMGCAA-DVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQ 295
Query: 57 --------------NVITFNT-----LALVALNLFEEMVNEFGVI-CKPDVVTCTNIIDG 96
NV+ FNT LA L E+ G+ C+PD T + ++ G
Sbjct: 296 ADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHG 355
Query: 97 LCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
LCK G M +G P+VVT ++ + K+G ++ LLE M + + N
Sbjct: 356 LCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415
Query: 147 TCTYNTLM-----DGF---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ YN ++ DG S+GC D+ SYN +I C + +E+A +
Sbjct: 416 SQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFE 475
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+L EG+ A+ TYNT+ M ++ D Y I + K+G
Sbjct: 476 NLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDG 535
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V ++ + + + N LI LCK R++ A ++ ++ N GL PD+VTY
Sbjct: 536 NVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQML-NQGLAPDIVTY 594
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +I+G CK G A LL + + P+
Sbjct: 595 NTLINGLCKMGWMHAALNLLEKLHNENVHPD 625
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 126/279 (45%), Gaps = 60/279 (21%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
LL + T N +N +I LC +GR+ EA L +++ C+P++ ++NT+
Sbjct: 402 ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHL 461
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
A ++FE ++ E GV+ + +T II L +DG D G
Sbjct: 462 CNNEQMEEAEHMFENLLEE-GVVA--NGITYNTIIHALLRDGRWQDAVRLAKEMILHGCS 518
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
DVV+ N + + KDG ++ + LLE M ++ + PN
Sbjct: 519 LDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNV--------------------- 557
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
SYNILI+ CK+R V DA+ L ++ML++G+ D TYNTL I+G
Sbjct: 558 SYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTL-----------------ING 600
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L K G++ A+ + + N I T N LI CK+
Sbjct: 601 LCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKV 639
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 151/350 (43%), Gaps = 58/350 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GRA LL + P+ V + ++I LC +G + EAA L ++ + C +V T
Sbjct: 188 LGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNT 247
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQG 107
F+ + A L + M+ + C P V+T ++ GLC+ D G
Sbjct: 248 FDDVVRGMCGLGRVREAARLVDRMMTKG---CMPGVMTYGFLLQGLCRVRQADEARAMLG 304
Query: 108 MRPD--VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
P+ VV N + +GK+ EA L E M G KGC+
Sbjct: 305 RVPELNVVLFNTVIGGCLAEGKLAEATELYETM-----------------GL----KGCQ 343
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
D ++Y+IL++G CK + AV L REM +G + TY +
Sbjct: 344 PDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRAL 403
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M+ + +S Y I L K+G + EAM + + + C I + N +I LC
Sbjct: 404 LEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCN 463
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+++ A +F L++ G+ + +TYN +IH ++G+ Q A L +M
Sbjct: 464 NEQMEEAEHMFENLLEE-GVVANGITYNTIIHALLRDGRWQDAVRLAKEM 512
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 42/297 (14%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM------RPDVVTLN 116
AL+L +++ FGV +P + ++ L + D + + M P T
Sbjct: 122 ALHLLDQLPRRFGV--QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFG 179
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
V L + G+ +EA LL M + P+ Y T++
Sbjct: 180 VAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLM 239
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP----- 217
GC DV +++ ++ G C V +A L M+++G TY L + V
Sbjct: 240 GCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEA 299
Query: 218 -------PDSHV--YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ +V + T I G G + EA +++ +G C T + L+ GLCK+
Sbjct: 300 RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKL 359
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A + M+ G P+VVTY I++H FCK G LL +M GL N
Sbjct: 360 GRIGSAVRLLRE-MEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLN 415
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 36/203 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
P++ ++N++I LC ++ EA +F+ L N IT+NT+ AL+ A+ L
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM+ C DVV+ +I +CKDG M ++G++P+ V+ N++
Sbjct: 509 AKEMILHG---CSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISE 565
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHD 167
L K+ ++ +A L + M+ + + P+ TYNTL++G W ++ D
Sbjct: 566 LCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPD 625
Query: 168 VYSYNILINGYCKDRNVEDAVSL 190
+ +YNILI+ +CK R ++DA L
Sbjct: 626 IITYNILISWHCKVRLLDDAAML 648
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R L ++L P++VT+N+LI GLC G + A L +KL+ P++IT+N
Sbjct: 571 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 630
Query: 63 TL 64
L
Sbjct: 631 IL 632
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 53/346 (15%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
L + + PN+V + S+I G C G + A +FK + C PN T+ +L + L
Sbjct: 446 LNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSL-IYGLI 504
Query: 71 LFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
+++ +I K P V+ T +I G CK M G+ PD
Sbjct: 505 QDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQ 564
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------W 159
NV+TD L K G+ EEA L +++ V TY +L+DGF+
Sbjct: 565 AYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKM 621
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
++GC+ D+Y+Y++L+ CK + + +A+S+ +M G++ +
Sbjct: 622 VNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIV--------------- 666
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
YT I + K G A +F+ + + + T I CKIG+++ A +
Sbjct: 667 --AYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG 724
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+TPDVVTY+I I+G G +A L M + EPN
Sbjct: 725 E-MERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPN 769
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 154/348 (44%), Gaps = 48/348 (13%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLFEEMVNEFGV 81
T N+L+ G C + +A L + + C N ++ L A + E +V F +
Sbjct: 216 TCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMM 275
Query: 82 I---CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKM 128
+ C ++ T +I GLCK+G + D +G+ P V T N M D K G+M
Sbjct: 276 VQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRM 335
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYSYNILI 175
++A + +M Q NP+ TYN+L+ G ++G V ++ LI
Sbjct: 336 KDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLI 395
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
NGYCK ++DA+ + M+S + D Y L M N +
Sbjct: 396 NGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLA 455
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ +YT+ IDG K G V A++VF + + C T LI GL + +L A +
Sbjct: 456 PNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL 515
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+TP V+ Y +I G CK+ + A L ME+ GL P+
Sbjct: 516 ITK-MQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPD 562
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 162/373 (43%), Gaps = 55/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + P++ T+N++I G C GR+ +A + + C+P+ T+
Sbjct: 298 GRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTY 357
Query: 62 NTLAL----VALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCK-----DGFMMDQGM- 108
N+L L+ EE++N G I + P V+T TN+I+G CK D + M
Sbjct: 358 NSLIYGLCGGKLDEAEELLN--GAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMI 415
Query: 109 ----RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+ D+ V+ + L K +++EA L M + PN Y +++DG+
Sbjct: 416 SSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVG 475
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+GC + ++Y LI G +D+ + A++L +M +GI Y TL
Sbjct: 476 AALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLI 535
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N + PD Y D L K+G EA +S + V
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVV 592
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
LT T L+DG K G A + M N G D+ TY++++ CK+ + +A
Sbjct: 593 LTKVTYTSLVDGFSKAGNTDFAAVLIEK-MVNEGCKADLYTYSVLLQALCKQKKLNEALS 651
Query: 313 LLLDMEETGLEPN 325
+L M +G++ N
Sbjct: 652 ILDQMTVSGVKCN 664
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
++ +G+ PD VT N M K G + A+ ++ + + +T T N L+ G+
Sbjct: 170 LVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSD 229
Query: 158 ---AWWS------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
A W GCR + YSY ILI G + R V +A+ L M+ +G +
Sbjct: 230 LRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNL----- 284
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
H+YT I GL K G + +A + + V ++ T N +IDG CK
Sbjct: 285 ------------HMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKS 332
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+K A I ++ QN G PD TYN +I+G C G+ +A LL G P
Sbjct: 333 GRMKDALGIKALMEQN-GCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGFTPT 387
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/359 (21%), Positives = 126/359 (35%), Gaps = 107/359 (29%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
VL+ +++ ++ T++ L++ LC + ++ EA + ++ V N++ + +
Sbjct: 616 VLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEM 675
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A +LF EM++ KP T T I CK G M G+
Sbjct: 676 IKEGKHDHAKSLFNEMISSGH---KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVT 732
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDVVT ++ + G M+ A L+ M+ PN TY L+ F
Sbjct: 733 PDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYID 792
Query: 158 ---AW--------WS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
W W G V +Y+ +I G+CK +E+A L ML + I
Sbjct: 793 TSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAI 852
Query: 200 RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
P+ +YT I C
Sbjct: 853 -----------------SPNEEIYTMLIK-----------------------------CC 866
Query: 260 CLIDGLCKIGRLKIAWDI-FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
C I K D+ F M G P + +Y+ +I G C EG + +A L D+
Sbjct: 867 CDIKLFGK--------DVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKSLFCDL 917
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 114/273 (41%), Gaps = 40/273 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+G + TP++VT++ I G G + A K++ C+PN T+ L +
Sbjct: 722 LIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFL 781
Query: 68 ALNLF-EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
++L ++ G+ ++ T +++ MM G+ P VVT + + K
Sbjct: 782 KMSLINAHYIDTSGMWNWIELNTVWQLLER------MMKHGLNPTVVTYSSIIAGFCKAT 835
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWSK-----------GCRHDVYSYN 172
++EEA LL+ M+ + ++PN Y L+ + K G + + SY+
Sbjct: 836 RLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYH 895
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
LI G C + + + A SL ++L + + L DGL K
Sbjct: 896 YLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILN-----------------DGLLK 938
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
G V ++ +A+ N C + E+ + L D +
Sbjct: 939 AGHVDFCSQLLAAMDNRHCRIDSESYSMLTDSI 971
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 51/189 (26%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN+ + + E L ++ EG+ D TYNT+ MA
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYC---------------- 190
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA-WDIFHM--------- 280
K G + A + F + + TCN L+ G C+ L+ A W + M
Sbjct: 191 -KKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNE 249
Query: 281 ------------------------LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
+M G + ++ Y ++I G CKEG+ A GLL +
Sbjct: 250 YSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRIHDARGLLDE 309
Query: 317 MEETGLEPN 325
M G+ P+
Sbjct: 310 MPLRGVVPS 318
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 125/264 (47%), Gaps = 42/264 (15%)
Query: 86 DVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+ VT ++ GLC+ G M+++G+ D ++ N + K GK+EEA L
Sbjct: 500 NTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLK 559
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKD 181
E M+Q++ P+T TYN LM G A K G +VY+Y +L+ GYCK
Sbjct: 560 EEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKA 619
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+EDAV + + E + + YN L A + G V EA K
Sbjct: 620 DRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRI-----------------GNVTEAFK 662
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ A+ + + T T + LI G+C IGR+ A +IF M+N GL P+V Y +I G
Sbjct: 663 LRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEE-MRNEGLLPNVFCYTALIGGH 721
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK GQ +LL+M G+ PN
Sbjct: 722 CKLGQMDIVGSILLEMSSNGIRPN 745
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 52/326 (15%)
Query: 45 LFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICK---PDVVTCTNIIDGLCK 99
+F K VF C + T N L +LV N + F + C+ PDV T T I+ CK
Sbjct: 211 MFSKRGVFPC---LKTCNLLLSSLVKANELHKSYEVFDLACQGVAPDVFTFTTAINAFCK 267
Query: 100 DGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G + D G+ P+VVT N + D L K G+ EEA + M++ VNP+ T
Sbjct: 268 GGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVT 327
Query: 150 YNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
Y L+ G +S G + +N LI+GYC+ ++ +A+ + EM
Sbjct: 328 YGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMA 387
Query: 196 SEGIRADATTYNTLFMAI--NNVPPDSHVYTTYI--DGLY---------------KNGFV 236
+G++ + T+NTL +N + YI GL ++GFV
Sbjct: 388 MKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFV 447
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
A+K+ + + + ++ L+ GLCK A +++ L GL + VT N
Sbjct: 448 -SALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNA 506
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGL 322
++HG C+ G ++ +L M E GL
Sbjct: 507 LLHGLCERGNMEEVFEVLKQMLEKGL 532
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 146/349 (41%), Gaps = 73/349 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P++ TF + I C GR+ +A LF K+ PNV+T+N
Sbjct: 252 APDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYN----------------- 294
Query: 80 GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKME 129
N+IDGL K G M+ + P VVT V+ L K E
Sbjct: 295 ------------NVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFE 342
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
EAN +L M PN +N L+DG+ KG + + ++N L+
Sbjct: 343 EANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLL 402
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRA--DATTY-------NTLFMAI---------NNVP 217
G+C+ +E A + +LS G+ D +Y + F++ N+
Sbjct: 403 QGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVTKLLSGNIR 462
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWD 276
+ T + GL K EA++++ + K + T N L+ GLC+ G ++ ++
Sbjct: 463 VSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFE 522
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ GL D ++YN +I G CK G+ ++A L +M + +P+
Sbjct: 523 VLKQMLEK-GLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPD 570
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/437 (21%), Positives = 155/437 (35%), Gaps = 143/437 (32%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR R++ S P++VT+ LI GL EA + ++ PN + F
Sbjct: 304 GRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVF 363
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
N L IDG C+ G M + +GM+P+
Sbjct: 364 NAL-----------------------------IDGYCRKGDMGEALRVRDEMAMKGMKPN 394
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQR--DVNPNTCTY--NTLMD--GFA------- 158
VT N + + +ME+A +L ++ VN + C+Y + LM+ GF
Sbjct: 395 FVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSALKIVT 454
Query: 159 ---------------------------------WWS----KGCRHDVYSYNILINGYCKD 181
W+ KG + + N L++G C+
Sbjct: 455 KLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCER 514
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E+ + ++ML +G+ D +YNTL M PD++ Y
Sbjct: 515 GNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTY 574
Query: 224 TTYIDGL-------------------------YKNGFVLE----------AMKVFSAIGN 248
+ GL Y +LE A+K F +
Sbjct: 575 NFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDY 634
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
K L+ N LI C+IG + A+ + M++ G+ P TY+ +IHG C G+
Sbjct: 635 EKVELSSVVYNILIAAYCRIGNVTEAFKL-RDAMKSRGILPTCATYSSLIHGMCCIGRVD 693
Query: 309 KANGLLLDMEETGLEPN 325
+A + +M GL PN
Sbjct: 694 EAKEIFEEMRNEGLLPN 710
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 144/353 (40%), Gaps = 95/353 (26%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--A 65
F +L ++L + +++N+LI G C G+I EA +L +++ P+ T+N L
Sbjct: 521 FEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKG 580
Query: 66 LVALNLFEEM------VNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
L + +++ E+G + P+V T +++G CK + D + +
Sbjct: 581 LADMGKIDDVHRLLHEAKEYGFV--PNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVE 638
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
V N++ + G + EA L + M R + P TY++L+ G
Sbjct: 639 LSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEI 698
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
++G +V+ Y LI G+CK ++ S+ EM S GIR
Sbjct: 699 FEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIR--------------- 743
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ YT ID G CK+G +K A
Sbjct: 744 --PNKITYTIMID-----------------------------------GYCKLGNMKEAR 766
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ--------HQKANGLLLDMEET 320
++ + +++N G+ PD VTYN + G+CKE + H+ GL L+ E T
Sbjct: 767 ELLNEMIRN-GIAPDTVTYNALQKGYCKERELTVTLQSDHKSNIGLPLEEEIT 818
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 30/238 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F L ++ F P+ T+N L+KGL G+I + RL + + PNV T+
Sbjct: 550 GKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTY 609
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDV----VTCTNIIDGLCKDG----------FMMD 105
L + E+ V F + V V +I C+ G M
Sbjct: 610 ALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKS 669
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ P T + + + G+++EA + E M + PN Y L+ G
Sbjct: 670 RGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDI 729
Query: 157 -----FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
S G R + +Y I+I+GYCK N+++A L EM+ GI D TYN L
Sbjct: 730 VGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNAL 787
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 39/167 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + F L + P T++SLI G+C GR+ EA
Sbjct: 654 IGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAK----------------- 696
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+FEEM NE G++ P+V T +I G CK G M G+RP
Sbjct: 697 ---------EIFEEMRNE-GLL--PNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRP 744
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
+ +T +M D K G M+EA LL MI+ + P+T TYN L G+
Sbjct: 745 NKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGY 791
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+FS G C ++TCN L+ L K L ++++F + Q G+ PDV T+ I+ F
Sbjct: 211 MFSKRGVFPC---LKTCNLLLSSLVKANELHKSYEVFDLACQ--GVAPDVFTFTTAINAF 265
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
CK G+ A L ME G+ PN
Sbjct: 266 CKGGRVGDAVDLFCKMEGLGVFPN 289
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/341 (29%), Positives = 162/341 (47%), Gaps = 60/341 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA-------LNLFE 73
P++V++ +I LC R EAA+++++L P+ +ALV ++L
Sbjct: 152 PDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKA--CVALVVGLCSGGRVDLAY 209
Query: 74 EMVNEFGVI---CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
E+V GVI K + + +IDG C+ G FM G PD+VT N++ +
Sbjct: 210 ELV--VGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLN 267
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------------AWWSKG-C 164
++G ++EA L+E M + V P+ +YN L+ GF +KG C
Sbjct: 268 YCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMC 327
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
DV SYN +I +CK R L EM +GIR D T+N L A +HV
Sbjct: 328 --DVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR-EGSTHVVK 384
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+D + K M+V C+ ++D LCK G++ +A +F +++N
Sbjct: 385 KLLDEMTK-------MRVLP-----DCIFY----TAVVDHLCKNGKVDVAHSVFRDMVEN 428
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV++YN +++GFCK + A L +M+ GL P+
Sbjct: 429 -GVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPD 468
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 30/239 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR + + + P++VT+N L+ C EG + EA RL + + +P++ +
Sbjct: 237 MGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYS 296
Query: 61 FNTL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MM 104
+N L N+ + MV DVV+ +I CK G+ M
Sbjct: 297 YNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMC 356
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
+G+RPD+VT N++ D ++G LL+ M + V P+ Y ++D K
Sbjct: 357 GKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVD 416
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
G DV SYN L+NG+CK V DA+ L EM S+G+ D TY +
Sbjct: 417 VAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLI 475
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 129/331 (38%), Gaps = 63/331 (19%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-----NVFCCDPN----VITFNTLALV 67
S + + + S I L G I +A LF ++ VF D N V+ ++ +
Sbjct: 4 SSIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHL 63
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQ---GMRPDVVT 114
A + + V G P T + I LC ++D G PD+
Sbjct: 64 AHHYYRRHVIPRGFSLLP--FTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWA 121
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + L + ++E A L M + +P DV SY I+
Sbjct: 122 FNTYLNLLCRQNRLETALELFHSMPSKGRDP---------------------DVVSYTII 160
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+ C + ++A + R ++ +G+ PD + GL G
Sbjct: 161 IDALCNAKRFDEAAKVWRRLIDKGL-----------------SPDYKACVALVVGLCSGG 203
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V A ++ + + N LIDG C++GR+ A I M G PD+VTY
Sbjct: 204 RVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKI-KAFMSRTGCVPDLVTY 262
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
NI+++ C+EG +A L+ ME +G+EP+
Sbjct: 263 NILLNYCCEEGMVDEAVRLVETMERSGVEPD 293
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 148/327 (45%), Gaps = 63/327 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L+ C EG I A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTL-----------MNG 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + ++ +G M G++PDV T +V+ + L K+ KM++AN L + M
Sbjct: 181 Y--------IKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + PN T+ TL+DG +CK+ V+ A+ + R+MLS+
Sbjct: 233 LBNGLVPNGVTFTTLIDG---------------------HCKNGRVDLAMEIYRQMLSQS 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M++ + PD YTT IDG K G + A
Sbjct: 272 LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
+ + L LI GLC+ GR + D ML M + GL P++ TY ++I
Sbjct: 332 EYRKRMIKENIRLDDXAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPEIGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK+G + LL +M+ G PN
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRXGYXPN 415
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 42/246 (17%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +I+ L K + ++ G + N++ N K+G++ A + + +
Sbjct: 103 TCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ + G + DVY++++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML G+ P+ +TT IDG KNG V AM+++
Sbjct: 223 DDANELFDEMLBNGL-----------------VPNGVTFTTLIDGHCKNGRVDLAMEIYR 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + + + T N LI GLCK G LK D+ M GL PD +TY +I G CKE
Sbjct: 266 QMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDE-MSMKGLKPDKITYTTLIDGNCKE 324
Query: 305 GQHQKA 310
G + A
Sbjct: 325 GDLETA 330
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 150 YNTLMDGFAWWSKGCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
Y L+ GF S C + +Y +NIL++ +CK+ + A S+ + G+R ++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFN 175
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + V PD + ++ I+GL K + +A ++F + B+
Sbjct: 176 TLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBN 235
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V T LIDG CK GR+ +A +I+ ++ L PD++TYN +I+G CK+G ++
Sbjct: 236 GLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ-SLLPDLITYNTLIYGLCKKGDLKQ 294
Query: 310 ANGLLLDMEETGLEPN 325
L+ +M GL+P+
Sbjct: 295 XXDLIDEMSMKGLKPD 310
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 43/215 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L + PN VTF +LI G C GR+ A +++++ P++IT+NTL
Sbjct: 228 LFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLI---- 283
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+G+ K D+ ++ID M +G++PD +T + D K+G +E
Sbjct: 284 ---------YGLCKKGDLKQXXDLIDE------MSMKGLKPDKITYTTLIDGNCKEGDLE 328
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
A + MI+ ++ R D +Y LI+G C++ DA
Sbjct: 329 TAFEYRKRMIKENI---------------------RLDDXAYTALISGLCQEGRSVDAEK 367
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ REMLS G++ + TY M IN V+T
Sbjct: 368 MLREMLSVGLKPEIGTYT---MIINEFCKKGDVWT 399
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 128 MEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVE 185
+ EA L+++++ R + + +++ +KG R D+Y ++ LI Y + +
Sbjct: 29 LPEAKTLIQIVVSRKGKGSASAVFAAILE-----TKGTQRSDIYVFSGLITAYLESGFLR 83
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYI 227
DA+ R R T + + + P + + +
Sbjct: 84 DAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 143
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
K G + A VF +I ++ + N L++G KIG L + + +MQ G+
Sbjct: 144 HNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRL-KSVMQASGV 202
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV T++++I+G CKE + AN L +M + GL PN
Sbjct: 203 QPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPN 240
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++L P+++T+N+LI GLC +G + + L ++++ P+ IT+
Sbjct: 255 GRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITY 314
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
TL A + M+ E + D T +I GLC++G
Sbjct: 315 TTLIDGNCKEGDLETAFEYRKRMIKEN---IRLDDXAYTALISGLCQEGRSVDAEKMLRE 371
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
M+ G++P++ T ++ + K G + + LL+ M + PN T
Sbjct: 372 MLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXPNXVT 418
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 49/326 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFE 73
F P++ +FN LI+GLC G I +A F+ + F C P+++++NTL + ++
Sbjct: 210 FVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGH 269
Query: 74 EMVNEFGVI--CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+++ E +I PDV+T T+II G CK G M+ G++P+ T NV+ D
Sbjct: 270 DLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDG 329
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSKGCRH---D 167
K G M A + E M+ P+ T+ +L+DG+ W R+ +
Sbjct: 330 FGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
VY+Y +LIN CK+ + +A + R + S + V P +Y I
Sbjct: 390 VYTYAVLINALCKENRIREARNFLRHLKS-----------------SEVVPKPFIYNPVI 432
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K G V EA + + + KC T LI G C GR+ A F+ +++
Sbjct: 433 DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIE-INC 491
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGL 313
PD +T N +I K G +A+ +
Sbjct: 492 VPDEITINSLISCLLKAGMPNEASQI 517
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 34/249 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------- 161
PDV + N++ L + G++++A + M P+ +YNTL++GF +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271
Query: 162 -------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FM 211
KG DV +Y +I+GYCK +++ A L EM+S GI+ + T+N L F
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331
Query: 212 AINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ N+ PD +T+ IDG + G V + +K++ + +
Sbjct: 332 KVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVY 391
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T LI+ LCK R++ A + L ++ + P YN +I GFCK G+ +AN ++ +
Sbjct: 392 TYAVLINALCKENRIREARNFLRHL-KSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAE 450
Query: 317 MEETGLEPN 325
M+E P+
Sbjct: 451 MQEKKCRPD 459
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 38/240 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
+ G +L +L+ +P+++T+ S+I G C G + A+ LF ++ PN TFN
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325
Query: 64 L---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR----- 109
L A+ ++E+M+ + C PDVVT T++IDG C++G ++QG++
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKML---LLGCLPDVVTFTSLIDGYCREG-EVNQGLKLWEEM 381
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
P+V T V+ + L K+ ++ EA L + +V P YN ++DGF
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K CR D ++ ILI G C + +A+S +M+ D T N+L
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------- 162
T +++ NL K G + A + + M + P++ L+ +A K
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
G + + YN L+N K V++AV L RE L D ++N L
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNIL---------- 220
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I GL + G + +A + F +GN C I + N LI+G C++ + D+
Sbjct: 221 -------IRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLK 273
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G++PDV+TY +I G+CK G + A+ L +M +G++PN
Sbjct: 274 EDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPN 319
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G V+ ++L+ P++VTF SLI G C EG + + +L++++ V PNV T
Sbjct: 333 VGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYT 392
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVT----CTNIIDGLCKDGF----------MM 104
+ L AL N E N + +VV +IDG CK G M
Sbjct: 393 YAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQ 452
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ RPD +T ++ G+M EA MI+ + P+ T N+L+
Sbjct: 453 EKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLIS 503
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 152/336 (45%), Gaps = 56/336 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----------ALNLFEE 74
F++LI G EA ++F+ + PN++T+N + A +F+E
Sbjct: 222 AFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDE 281
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
M+ GV +PD +T +++ + G M+ +G+ D+ T N + D + K
Sbjct: 282 MLRN-GV--QPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCK 338
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G+M+ A ++ M ++ + PN TY+T++DG+A + D S
Sbjct: 339 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVS 398
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
YN L++ Y K E+A+++C+EM S GI+ DA TYN L M
Sbjct: 399 YNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMK 458
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ P+ Y+T ID K G EAM+VF + + LID LCK G ++
Sbjct: 459 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 518
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
A F M G+ P+VVTYN +I F + G +
Sbjct: 519 SAVS-FLDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 147/344 (42%), Gaps = 58/344 (16%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F ++ + PN+VT++++I G GR+ EA LF ++ + +++NTL
Sbjct: 345 AFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLS 404
Query: 67 V--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSK 124
+ L FEE +N +CK+ M G++ D VT N + K
Sbjct: 405 IYAKLGRFEEALN-------------------VCKE--MESSGIKKDAVTYNALLGGYGK 443
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK EE + E M + PN TY+TL+D ++ + G + DV
Sbjct: 444 QGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVL 503
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV--------PPDSHV 222
Y+ LI+ CK+ VE AVS EM EGIR + TYN++ A PP
Sbjct: 504 YSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPP---- 559
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL-IDGLCKI-----GRLKI--A 274
Y T + + + + S +G+ + I+ L + C GR +I
Sbjct: 560 YETNVSKMSSSSLKVVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCI 619
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+FH M + P+VVT++ +++ + + A+ LL ++
Sbjct: 620 LAVFHK-MHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 131/285 (45%), Gaps = 48/285 (16%)
Query: 67 VALNLFEEMVNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL 115
+A N+FE +NE +G V + +I + G+ M G++P++VT
Sbjct: 203 LAKNVFETALNEGYGNT----VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTY 258
Query: 116 NVMTDNLSKDG-KMEEANCLLEVMIQRDVNPNTCTYNTLM----DGFAWWS--------- 161
N + D K G A + + M++ V P+ T+N+L+ G W +
Sbjct: 259 NAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEML 318
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+G D+++YN L++ CK ++ A + EM + I + TY+T+
Sbjct: 319 YRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTV----------- 367
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
IDG K G + EA+ +F+ + L + N L+ K+GR + A ++
Sbjct: 368 ------IDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKE 421
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G+ D VTYN ++ G+ K+G++++ + +M+ + PN
Sbjct: 422 -MESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPN 465
>gi|357499031|ref|XP_003619804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494819|gb|AES76022.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 151/316 (47%), Gaps = 50/316 (15%)
Query: 32 GLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--ALNLFEEMVNEFGVI 82
G C G+ A +L ++++ PNVI ++T+ LV A +L+ EMV +
Sbjct: 24 GSCKVGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGMCKGKLVNDAFDLYSEMVAKR--- 80
Query: 83 CKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEAN 132
PDV+T + +I G C G + D + + PDV T N+ D K+G+++EA
Sbjct: 81 ISPDVITYSALISGFCIVGKLNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAK 140
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+L +M++ + P+ TYNTLM+G+ + D+++ +N + +++A++L
Sbjct: 141 YVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMNMAKDIFN---TMNQSGVVKMIDEAINLY 197
Query: 192 REMLSEGIRADATTYNTL--FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
EM D TY++L M PPD Y + +DG+ + +
Sbjct: 198 EEMHCRKNIPDVVTYSSLVDIMHDRGQPPDIITYNSILDGIRPDMY-------------- 243
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T I GLC+ G+LK A +F L+ G DV TY +MI GFC +G ++
Sbjct: 244 -------TYTIFIKGLCQSGKLKDARKVFEDLLVK-GYNLDVYTYTVMIQGFCDKGLFKE 295
Query: 310 ANGLLLDMEETGLEPN 325
A LL ME+ G P+
Sbjct: 296 ALALLSKMEDNGCIPD 311
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 55/250 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L ++ P++ TFN + C EGR+ EA + + P+V+T
Sbjct: 98 VGKLNDTIGLFNKMTAENINPDVYTFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVT 157
Query: 61 FNTLA----LV------------------------ALNLFEEMVNEFGVICKPDVVTCTN 92
+NTL LV A+NL+EEM + PDVVT ++
Sbjct: 158 YNTLMNGYCLVKEMNMAKDIFNTMNQSGVVKMIDEAINLYEEMHCRKNI---PDVVTYSS 214
Query: 93 IIDGLCKDGFMMD--------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
++D + G D G+RPD+ T + L + GK+++A + E ++ + N
Sbjct: 215 LVDIMHDRGQPPDIITYNSILDGIRPDMYTYTIFIKGLCQSGKLKDARKVFEDLLVKGYN 274
Query: 145 PNTCTYNTLMDGF----------AWWSK----GCRHDVYSYNILI-NGYCKDRNVEDAVS 189
+ TY ++ GF A SK GC D Y I+I + + KD N + A
Sbjct: 275 LDVYTYTVMIQGFCDKGLFKEALALLSKMEDNGCIPDAKIYEIVILSLFEKDEN-DMAEK 333
Query: 190 LCREMLSEGI 199
L REM++ G+
Sbjct: 334 LLREMIARGL 343
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 96/271 (35%), Gaps = 90/271 (33%)
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D K G+ A LL + + V PN Y+T++DG C
Sbjct: 23 DGSCKVGQTRAALQLLRRVDGKLVQPNVIMYSTIIDGM---------------------C 61
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K + V DA L EM+++ I D TY+ L M N+ PD +
Sbjct: 62 KGKLVNDAFDLYSEMVAKRISPDVITYSALISGFCIVGKLNDTIGLFNKMTAENINPDVY 121
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+ +D K G V EA V S + H ++ T N L++G C + + +A DIF+ +
Sbjct: 122 TFNISVDAFCKEGRVKEAKYVLSMMMKHGIKPSVVTYNTLMNGYCLVKEMNMAKDIFNTM 181
Query: 282 -------------------------------------MQNPGLTPDVVTYN--------- 295
M + G PD++TYN
Sbjct: 182 NQSGVVKMIDEAINLYEEMHCRKNIPDVVTYSSLVDIMHDRGQPPDIITYNSILDGIRPD 241
Query: 296 -----IMIHGFCKEGQHQKANGLLLDMEETG 321
I I G C+ G+ + A + D+ G
Sbjct: 242 MYTYTIFIKGLCQSGKLKDARKVFEDLLVKG 272
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 70/367 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + + P++ T+ LI C G + +A + F ++ C PNV+T+
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYT 554
Query: 63 TLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------ 101
L L LFE M++E C P+VVT T +IDG CK G
Sbjct: 555 ALIHAYLKARKMSSANELFEMMLSEG---CIPNVVTYTALIDGHCKSGQIEKACQIYARM 611
Query: 102 ------------FMMDQG--MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
F +D G P++ T + D L K K++EA LL+VM PN
Sbjct: 612 RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNH 671
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF +G +VY+Y+ LI+ KD+ ++ A+ +
Sbjct: 672 IVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
ML N+ P+ +YT IDGL K G EA ++ S + C
Sbjct: 732 MLE-----------------NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T +IDG K G++ ++ M G P+ VTY ++I+ C G A+ L
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQ-MGAKGCAPNFVTYRVLINHCCAAGLLDDAHQL 833
Query: 314 LLDMEET 320
L +M++T
Sbjct: 834 LDEMKQT 840
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 159/362 (43%), Gaps = 48/362 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ ++ F P+ T++ +I LC ++ A LF+++ P+V T+
Sbjct: 459 GKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTY 518
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A F+EMV + C P+VVT T +I K
Sbjct: 519 TILIDSFCKVGLLQQARKWFDEMVRDG---CAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G P+VVT + D K G++E+A + M P+ Y + DG
Sbjct: 576 MLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG------ 629
Query: 163 GCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
R ++++Y L++G CK V++A L M EG + Y+ L
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDE 689
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M+ P+ + Y++ ID L+K+ + A+KV S + + C + +ID
Sbjct: 690 AQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMID 749
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK+G+ A+ + M M+ G P+VVTY MI GF K G+ K L+ M G
Sbjct: 750 GLCKVGKTDEAYRLMSM-MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCA 808
Query: 324 PN 325
PN
Sbjct: 809 PN 810
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 147/357 (41%), Gaps = 70/357 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
P+ FNSLI C G A +L KK+ C P + +N L L +L++
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426
Query: 73 EEMVNEFGVICKPDV----VTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
E +G + V V +N+ LC G MM +G PD T + +
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GC 164
L K++ A L E M V P+ TY L+D F W+ + GC
Sbjct: 487 IGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGC 546
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y LI+ Y K R + A L MLSEG P+ YT
Sbjct: 547 APNVVTYTALIHAYLKARKMSSANELFEMMLSEG-----------------CIPNVVTYT 589
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE----------------TCNCLIDGLCKI 268
IDG K+G + +A ++++ + + + ++ T L+DGLCK
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++K A D+ +M G P+ + Y+ +I GFCK G+ +A + M E G PN
Sbjct: 650 HKVKEARDLLD-VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+ +L+ GLC ++ EA L ++V C+PN I ++ L + +E
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 79 FGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + + P+V T +++ID L KD M++ P+V+ M D L K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+ +M ++ +PN TY ++DGF +KGC + +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +LIN C ++DA L EM TY MA Y I+G
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEM--------KQTYWPKHMA---------GYRKVIEG- 855
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-P 289
+ F++ ++ + I + V I LID CK GRL++A ++ + +
Sbjct: 856 FNREFII-SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAA 914
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y+ +I + KA L DM + G P
Sbjct: 915 DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 126/330 (38%), Gaps = 58/330 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + V + +I GLC EA ++ C PNV+T+ L
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC------------ 342
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G + K + C I+ M+ +G P N + + G A LL+ M
Sbjct: 343 -GCLRKRQLGRCKRIL------SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY-----SYNILINGY--------------- 178
P YN L+ G K DV +Y +++ +
Sbjct: 396 GDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCL 455
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C E A S+ REM+S+G D +TY+ + M N+V PD
Sbjct: 456 CGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDV 515
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT ID K G + +A K F + C + T LI K ++ A ++F M
Sbjct: 516 FTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ + G P+VVTY +I G CK GQ +KA
Sbjct: 576 ML-SEGCIPNVVTYTALIDGHCKSGQIEKA 604
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 129/305 (42%), Gaps = 48/305 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L R+L + PN++ + +I GLC G+ EA RL + C PNV+T+
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA------ 781
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG K D C ++ M +G P+ VT V+ ++ G ++
Sbjct: 782 -----MIDGFGKAGKVD--KCLELMRQ------MGAKGCAPNFVTYRVLINHCCAAGLLD 828
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---SKGCRHDVY---------SYNILING 177
+A+ LL+ M Q + Y +++GF S G ++ +Y ILI+
Sbjct: 829 DAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDS 888
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+CK +E A+ L + M S T+Y+ D +Y++ I+ L V
Sbjct: 889 FCKAGRLELALELHKXMSS------CTSYSA---------ADKDLYSSLIESLSLASKVD 933
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL--KIAWDIFHMLMQNPGLTPDVVTYN 295
+A ++++ + + + L+ GL +I R W +++ Q+ V
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIRINRTLCXTTWASYYLWGQSAATGHAVAEQK 993
Query: 296 IMIHG 300
+ I G
Sbjct: 994 LEIAG 998
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G + +YN L+ + + ++ A + REM G D T
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ D+ +YT I GL + EAM S + + C+ + T L+ G +
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+L I M++ G P +N +IH +C+ G + A LL M + G +P
Sbjct: 347 KRQLGRCKRILSMMI-TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 99/295 (33%), Gaps = 75/295 (25%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D G D TL L K G+ EA L+E + + +T Y ++ G
Sbjct: 258 MSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVIYTQMISGLCEASL 314
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S C +V +Y IL+ G + R + + M++EG +N+
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGF-----VLE-AMKVFS 244
L A P VY I G+ N VLE A K +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML----------------------- 281
+ + VL + L LC G+ + A+ I +
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 282 -----------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ + PDV TY I+I FCK G Q+A +M G PN
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 158/360 (43%), Gaps = 57/360 (15%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ +T+++LI GR A RLF ++ C P + TL + A
Sbjct: 229 CF-PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKA 287
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM C P V T T +I GL K G M+ G+ PDVV LN +
Sbjct: 288 LDLFEEMKR---AGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNL 344
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++EE + M P +YNT++ +W+ K G
Sbjct: 345 MNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADG 404
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP----- 218
++Y+ILI+GYCK VE A+ L EM +G Y +L A+
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464
Query: 219 -------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
S VY I K G + EA+ +F+ + N + N L+ G+
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G + A + + +N G T D+ ++NI+++GF + G ++A + M+ G++P+
Sbjct: 525 VKAGMVNEANSLLRKMEEN-GCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPD 583
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 55/357 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ L + + +P + T+ LIKGL GR+ EA L+K + P+V+
Sbjct: 281 VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVF 340
Query: 61 FNTLA--LVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF-----------M 103
N L L + EE+ N F + C P VV+ +I L + M
Sbjct: 341 LNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKM 400
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G+ P T +++ D K ++E+A LLE M ++ P Y +L++ K
Sbjct: 401 KADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALG---KA 457
Query: 164 CRHDVYS-----------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
R++ + Y ++I + K + +AV L EM ++G
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQG-------- 509
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
PD + Y + G+ K G V EA + + + C I + N +++G
Sbjct: 510 ---------SGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFA 560
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ G + A ++F M++ G+ PD VTYN ++ F G ++A L+ +M++ G E
Sbjct: 561 RTGVPRRAIEMFET-MKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFE 616
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 129/320 (40%), Gaps = 59/320 (18%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEE 74
V + L+K L + +A +F + C P T+N++ L+ + ++ E
Sbjct: 163 VVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTE 222
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
M NE C PD +T + +I K G M D M+P + K
Sbjct: 223 MCNEGD--CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFK 280
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
GK+E+A L E M + GC VY+Y LI G K V
Sbjct: 281 VGKVEKALDLFEEMKR---------------------AGCSPTVYTYTELIKGLGKAGRV 319
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
E+A L + ML++G+ D N L + V G + E VF+
Sbjct: 320 EEAYDLYKNMLTDGLTPDVVFLNNLMNILGKV-----------------GRLEELTNVFN 362
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+G +C T+ + N +I L + + M+ G++P TY+I+I G+CK
Sbjct: 363 EMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKT 422
Query: 305 GQHQKANGLLLDMEETGLEP 324
+ +KA LL +M+E G P
Sbjct: 423 NRVEKALLLLEEMDEKGFPP 442
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLN---------VFCCDPNVITFNTLALVALN 70
+P+ T++ LI G C R+ +A L ++++ +C N + A
Sbjct: 406 SPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANE 465
Query: 71 LFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
LF+E+ FG + C + + + M +QG PDV N + +
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMV 525
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K G + EAN LL M + + ++N +++GFA G + D
Sbjct: 526 KAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGV 585
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+YN L+ + E+A L REM +G DA TY+++ A+ N+
Sbjct: 586 TYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNM 632
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 202 DATTYNTLFMAINNVPPDSHV------YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
+A Y ++ I V +++V + + L + V +A+ VF KC T
Sbjct: 138 EARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTS 197
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T N +I L + G+ + +++ + PD +TY+ +I + K G++ A L
Sbjct: 198 STYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFD 257
Query: 316 DMEETGLEP 324
+M++ ++P
Sbjct: 258 EMKDNCMQP 266
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 159/370 (42%), Gaps = 96/370 (25%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------------ 42
F + IL + PN +T N+LIKGLC G I A
Sbjct: 115 AFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLIN 174
Query: 43 -----------ARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMVNEFGVI 82
ARL +KL P+++ + T+ A +L+ EM+ + G+
Sbjct: 175 GLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVK-GI- 232
Query: 83 CKPDVVTCTNIIDGLC-----KDGFMMDQGMR-----PDVVTLNVMTDNLSKDGKMEEAN 132
P+V T T +I G C K+ F + M+ PDV T N++ D L+K+GK++EA
Sbjct: 233 -SPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAM 291
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
L E M +++ PN TY +L+DG CK+ ++E A++LC+
Sbjct: 292 SLFEEMKHKNMFPNIVTYTSLIDGL---------------------CKNHHLERAIALCK 330
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+M +GI+ P+ + YT +D L K G + A + F +
Sbjct: 331 KMKEQGIQ-----------------PNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYH 373
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
L + T N +I+GLCK G D+ M+ G P+ +T+ +I ++ ++ KA
Sbjct: 374 LNVRTYNVMINGLCKAGLFGDVMDL-KSKMEGKGCMPNAITFKTIICALLEKDENDKAEK 432
Query: 313 LLLDMEETGL 322
L +M GL
Sbjct: 433 FLREMIARGL 442
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW------- 159
G+ PD+ TL+++ + + A + +++R +PN T NTL+ G +
Sbjct: 91 GITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRA 150
Query: 160 -------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
++G + D SY LING CK + L R++ ++ D Y T+
Sbjct: 151 LHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHC 210
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + + P+ YTT I G G + EA + + +
Sbjct: 211 LCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPD 270
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T N LID L K G++ A +F M++ + P++VTY +I G CK ++A L
Sbjct: 271 VYTFNILIDALAKEGKIDEAMSLFEE-MKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 329
Query: 315 LDMEETGLEPN 325
M+E G++PN
Sbjct: 330 KKMKEQGIQPN 340
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 60/223 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG F LL + + P++ TFN LI L EG+I EA LF+++
Sbjct: 249 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMK---------- 298
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
N+F P++VT T++IDGLCK+ M +QG++P
Sbjct: 299 -------HKNMF------------PNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQP 339
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
+V + ++ D L K G++E A + ++ KG +V +
Sbjct: 340 NVYSYTILLDALCKGGRLENAKQFFQHLL---------------------VKGYHLNVRT 378
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
YN++ING CK D + L +M +G +A T+ T+ A+
Sbjct: 379 YNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICAL 421
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 148/323 (45%), Gaps = 54/323 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++ T+N+LI G C +G++ EA L + PN +++ L L A +L
Sbjct: 343 PDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDL 402
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F M + + D+V ++ GL G M+++G+ PD NV+ +
Sbjct: 403 FIGMTEKGHPL---DLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNG 459
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K G++ A LL M+ ++++ + TL+DGF +KG
Sbjct: 460 LCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPG 519
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V YN +I GYCK + DA++ C + + +G + PD Y+T I
Sbjct: 520 VVGYNAMIKGYCKFGMMNDALT-CVQRMKDGDHS----------------PDEFTYSTII 562
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
DG K + A+K+F + KC + T LI+G C+ G A F M++ GL
Sbjct: 563 DGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEE-MRSSGL 621
Query: 288 TPDVVTYNIMIHGFCKEGQHQKA 310
P+VVTY I+I FCKEG+ KA
Sbjct: 622 KPNVVTYTILIGCFCKEGKISKA 644
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 160/390 (41%), Gaps = 88/390 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------LVALNLF 72
PN+V +N+L+ G G + A LFK+L + P T+ + A++
Sbjct: 238 PNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGL 297
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ E GV +V +I+D K G ++ + G PD+ T N +
Sbjct: 298 LVEMKERGV--DVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGS 355
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+DGK+ EA LLE I+R ++PN +Y L+ + KG D+
Sbjct: 356 CRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGHPLDL 415
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+Y L++G V+ A+++ +M+ G+ DA YN L
Sbjct: 416 VAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKLLLVE 475
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS----------AIGNHK---------- 250
M N+ D+ V T +DG ++G + EA K+F +G +
Sbjct: 476 MLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGM 535
Query: 251 ------CVLTIE---------TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
CV ++ T + +IDG K L A +F +++ P+VVTY
Sbjct: 536 MNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQK-CKPNVVTYT 594
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I+GFC+ G +A +M +GL+PN
Sbjct: 595 SLINGFCRTGDSSRAEKTFEEMRSSGLKPN 624
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 33/244 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD----------VNPNTCTYNTLMDGFAW 159
PDV+ N + + L + K+E A + E M++RD + C + +G
Sbjct: 168 PDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNYSVCIMVRGLCKERKVEEGRKL 227
Query: 160 ----WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------ 209
W KGC ++ YN L++GY K +VE A L +E+ +G TY +
Sbjct: 228 INDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCK 287
Query: 210 ---FMAIN---------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
F A++ V + VY + +D K+G +E K I + C I T
Sbjct: 288 KCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITT 347
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
N LI G C+ G++ A ++ ++ GL+P+ ++Y +IH +CK+G+ +A L + M
Sbjct: 348 YNTLISGSCRDGKVHEAEELLEHAIKR-GLSPNKLSYTPLIHVYCKQGKCLRAFDLFIGM 406
Query: 318 EETG 321
E G
Sbjct: 407 TEKG 410
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 111/294 (37%), Gaps = 85/294 (28%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S +LL +L + + +L+ G G++ EA +LF+ DP V+ +
Sbjct: 464 GRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGY 523
Query: 62 NTL------------ALV--------------------------------ALNLFEEMVN 77
N + AL AL LF +MV
Sbjct: 524 NAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVK 583
Query: 78 EFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGK 127
+ CKP+VVT T++I+G C+ G M G++P+VVT ++ K+GK
Sbjct: 584 Q---KCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIGCFCKEGK 640
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------------------------AW 159
+ +A E+M+ PN T+N L++G
Sbjct: 641 ISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTM 700
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
S G V +YN ++ C + V A+ L +M +GI D ++ L +
Sbjct: 701 ISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGL 754
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Query: 150 YNTLMDGFAWWS-----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS-------- 196
+N L+DGF+ S CR V N+L CKD ++ RE LS
Sbjct: 93 FNDLLDGFSCSSLLKLLARCRVFVEVENLLETMKCKD------LAPTREALSFVVGAYVD 146
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA-IGNHKCVLTI 255
G+ A + I+N PD ++ L + V A KV+ + C
Sbjct: 147 SGLVNRALELYHIAYDIHNYLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNY 206
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
C ++ GLCK +++ + + G P++V YN ++ G+ K G ++ANGL
Sbjct: 207 SVC-IMVRGLCKERKVEEGRKLIND-RWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFK 264
Query: 316 DMEETGLEP 324
+++ G P
Sbjct: 265 ELKMKGFLP 273
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS-AIGNHKCVLTIETCNCLIDGLCKIG 269
M ++ P + + +G V A++++ A H + + CN L++ L +
Sbjct: 125 MKCKDLAPTREALSFVVGAYVDSGLVNRALELYHIAYDIHNYLPDVIACNALLNALIQQK 184
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++IA ++ +++ G D + IM+ G CKE + ++ L+ D G PN
Sbjct: 185 KVEIARKVYEEMVKRDGCW-DNYSVCIMVRGLCKERKVEEGRKLINDRWGKGCIPN 239
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 149/331 (45%), Gaps = 63/331 (19%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + P++ FN L+ C EG + A +F + + P+V++FNTL
Sbjct: 127 ILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ KM+EAN
Sbjct: 178 --MNGY--------IRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANE 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
+L M+ + PN T+ TL+D G+CK+ V+ A+ + ++
Sbjct: 228 MLNEMLDNGLVPNGVTFTTLID---------------------GHCKNGKVDLAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+G D TYNTL M + + PD YTT IDG K G
Sbjct: 267 MLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ ++ + L T LI GLC+ GR A D ML M GL PD T
Sbjct: 327 LEITFELRKRMIRENIRLDEVTYTALISGLCREGR---AGDAEKMLREMLTVGLKPDNGT 383
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
Y ++++ FCK G + A+ LL +M+ G P
Sbjct: 384 YTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 45/280 (16%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + +++ G P + N++ K+G+M A + + +
Sbjct: 103 TCRKVLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A + EML G+ + T+ TL M PD Y T
Sbjct: 223 DEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTL 282
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNP 285
I GL + G + +A + + T LIDG CK G L+I +++ M+ +N
Sbjct: 283 IYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENI 342
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L D VTY +I G C+EG+ A +L +M GL+P+
Sbjct: 343 RL--DEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPD 380
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
+L +L + PN VTF +LI G C G++ A ++K++ P++IT+NTL
Sbjct: 228 MLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLC 287
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A +L EEM+ + KPD +T T +IDG CK+G M+ + +R
Sbjct: 288 RRGDLGQARDLVEEMIMKG---LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRL 344
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D VT + L ++G+ +A +L M+ + P+ TY +M
Sbjct: 345 DEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIM---------------- 388
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEG 198
N +CK +V+ A L REM G
Sbjct: 389 -----NEFCKTGDVKTASKLLREMQRNG 411
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + + +A SL R ++S +G + + + + D +V+
Sbjct: 10 RHTLHSYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + ++GFV +A++ F HK + +TC +++ L K+ ++ W + +++
Sbjct: 70 SGLMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P + +NI++H FCKEG+ + A + + + L P+
Sbjct: 130 C-GYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 158/368 (42%), Gaps = 70/368 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
+ F+L + + P++ T+ LI C G + +A + F ++ C PNV+T+
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553
Query: 62 NTLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------- 101
L L LFE M++E C P+VVT T +IDG CK G
Sbjct: 554 TALIHAYLKARKMSSANELFEMMLSEG---CIPNVVTYTALIDGHCKSGQIEKACQIYAR 610
Query: 102 -------------FMMDQG--MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
F +D G P++ T + D L K K++EA LL+VM PN
Sbjct: 611 MRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPN 670
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y+ L+DGF +G +VY+Y+ LI+ KD+ ++ A+ +
Sbjct: 671 HIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLS 730
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
ML N+ P+ +YT IDGL K G EA ++ S + C
Sbjct: 731 RMLE-----------------NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH 773
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T +IDG K G++ ++ M G P+ VTY ++I+ C G A+
Sbjct: 774 PNVVTYTAMIDGFGKAGKVDKCLELMRQ-MGAKGCAPNFVTYRVLINHCCAAGLLDDAHQ 832
Query: 313 LLLDMEET 320
LL +M++T
Sbjct: 833 LLDEMKQT 840
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 158/361 (43%), Gaps = 46/361 (12%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ ++ F P+ T++ +I LC ++ A LF+++ P+V T+
Sbjct: 459 GKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTY 518
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A F+EMV + C P+VVT T +I K
Sbjct: 519 TILIDSFCKVGLLQQARKWFDEMVRDG---CAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G P+VVT + D K G++E+A + M P+ Y + DG
Sbjct: 576 MLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIR--- 632
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
++++Y L++G CK V++A L M EG + Y+ L
Sbjct: 633 --DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEA 690
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M+ P+ + Y++ ID L+K+ + A+KV S + + C + +IDG
Sbjct: 691 QMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDG 750
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LCK+G+ A+ + M M+ G P+VVTY MI GF K G+ K L+ M G P
Sbjct: 751 LCKVGKTDEAYRLMSM-MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAP 809
Query: 325 N 325
N
Sbjct: 810 N 810
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 147/357 (41%), Gaps = 70/357 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
P+ FNSLI C G A +L KK+ C P + +N L L +L++
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426
Query: 73 EEMVNEFGVICKPDV----VTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
E +G + V V +N+ LC G MM +G PD T + +
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GC 164
L K++ A L E M V P+ TY L+D F W+ + GC
Sbjct: 487 IGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGC 546
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y LI+ Y K R + A L MLSEG P+ YT
Sbjct: 547 APNVVTYTALIHAYLKARKMSSANELFEMMLSEG-----------------CIPNVVTYT 589
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE----------------TCNCLIDGLCKI 268
IDG K+G + +A ++++ + + + ++ T L+DGLCK
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++K A D+ +M G P+ + Y+ +I GFCK G+ +A + M E G PN
Sbjct: 650 HKVKEARDLLD-VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+ +L+ GLC ++ EA L ++V C+PN I ++ L + +E
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 79 FGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + + P+V T +++ID L KD M++ P+V+ M D L K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+ +M ++ +PN TY ++DGF +KGC + +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +LIN C ++DA L EM TY MA Y I+G
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEM--------KQTYWPKHMA---------GYRKVIEG- 855
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-P 289
+ F++ ++ + I + V I LID CK GRL++A ++ + +
Sbjct: 856 FNREFII-SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAA 914
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y+ +I + KA L DM + G P
Sbjct: 915 DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 126/330 (38%), Gaps = 58/330 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + V + +I GLC EA ++ C PNV+T+ L
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC------------ 342
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G + K + C I+ M+ +G P N + + G A LL+ M
Sbjct: 343 -GCLRKRQLGRCKRIL------SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY-----SYNILINGY--------------- 178
P YN L+ G K DV +Y +++ +
Sbjct: 396 GDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCL 455
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C E A S+ REM+S+G D +TY+ + M N+V PD
Sbjct: 456 CGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDV 515
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT ID K G + +A K F + C + T LI K ++ A ++F M
Sbjct: 516 FTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ + G P+VVTY +I G CK GQ +KA
Sbjct: 576 ML-SEGCIPNVVTYTALIDGHCKSGQIEKA 604
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 46/280 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L R+L + PN++ + +I GLC G+ EA RL + C PNV+T+
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA------ 781
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG K D C ++ M +G P+ VT V+ ++ G ++
Sbjct: 782 -----MIDGFGKAGKVD--KCLELMRQ------MGAKGCAPNFVTYRVLINHCCAAGLLD 828
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---SKGCRHDVY---------SYNILING 177
+A+ LL+ M Q + Y +++GF S G ++ +Y ILI+
Sbjct: 829 DAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDS 888
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+CK +E A+ L +EM S T+Y+ D +Y++ I+ L V
Sbjct: 889 FCKAGRLELALELHKEMSS------CTSYSA---------ADKDLYSSLIESLSLASKVD 933
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+A ++++ + + + L+ GL +I R + A +
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G + +YN L+ + + ++ A + REM G D T
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ D+ +YT I GL + EAM S + + C+ + T L+ G +
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+L I M++ G P +N +IH +C+ G + A LL M + G +P
Sbjct: 347 KRQLGRCKRILSMMI-TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 99/295 (33%), Gaps = 75/295 (25%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D G D TL L K G+ EA L+E + + +T Y ++ G
Sbjct: 258 MSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVIYTQMISGLCEASL 314
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S C +V +Y IL+ G + R + + M++EG +N+
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGF-----VLE-AMKVFS 244
L A P VY I G+ N VLE A K +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML----------------------- 281
+ + VL + L LC G+ + A+ I +
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 282 -----------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ + PDV TY I+I FCK G Q+A +M G PN
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 157/340 (46%), Gaps = 57/340 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
PN+V + S+I G C G++ A +F+ + C PN T+++L + L +++
Sbjct: 365 LAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSL-IYGLIQDQKLHKA 423
Query: 79 FGVICK-------PDVVTCTNIIDGLCK-----DGF----MMDQ-GMRPDVVTLNVMTDN 121
+I K P V+T T +I G CK + F MM+Q G+ PD NV+T
Sbjct: 424 MALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHA 483
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
L K G+ EEA L +++ V TY +L+DGF+ ++GC+ D
Sbjct: 484 LCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKAD 540
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
Y+Y++L+ CK + + +A+S+ +M G++ + YT I
Sbjct: 541 SYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVA-----------------YTIII 583
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNP 285
+ K G A +F+ + + + T I CKIG+++ A H++ M+
Sbjct: 584 SEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEA---EHLIGEMERD 640
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDVVTYN+ I+G G +A L M + EPN
Sbjct: 641 GVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPN 680
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 160/371 (43%), Gaps = 51/371 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G +L + + P++ T+N++I G C GR+ +A + + C+P+ T+
Sbjct: 209 GRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTY 268
Query: 62 NTLAL----VALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCK-----DGF-----MMDQ 106
N L + EE++N+ V P V+T TNII+G CK D M+
Sbjct: 269 NILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSS 328
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
+ D+ V+ + L K + +EA + M + PN Y +++DG+ K
Sbjct: 329 NCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAA 388
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GCR + ++Y+ LI G +D+ + A++L +M +GI TY TL
Sbjct: 389 LEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 448
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M N + PD Y L K+G EA +S + VLT
Sbjct: 449 QCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEA---YSFLVRKGVVLT 505
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T L+DG K G A + M N G D TY++++ CK+ + +A +L
Sbjct: 506 KVTYTSLVDGFSKAGNTDFAAVLIEK-MVNEGCKADSYTYSVLLQALCKQKKLNEALSIL 564
Query: 315 LDMEETGLEPN 325
M +G++ N
Sbjct: 565 DQMTLSGVKCN 575
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 128/284 (45%), Gaps = 42/284 (14%)
Query: 83 CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C ++ T T +I GLCK+G M +G+ P V T N M D K G+M++A
Sbjct: 191 CSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDAL 250
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWS-------------KGCRHDVYSYNILINGYC 179
+ +M + NP+ TYN L+ G +G V ++ +INGYC
Sbjct: 251 GIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYC 310
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K ++DA+ + MLS + D Y L M N + P+
Sbjct: 311 KAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVV 370
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
+YT+ IDG K G V A++VF + + C T + LI GL + +L A +
Sbjct: 371 IYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALI-TK 429
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+TP V+TY +I G CK+ + A L ME+ GL P+
Sbjct: 430 MQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 473
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GCR + YSY ILI G C+ R V +A+ L M+ +G + H
Sbjct: 155 GCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNL-----------------HT 197
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
YT I GL K G + A +V + V ++ T N +IDG CK GR+K A I LM
Sbjct: 198 YTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGI-KALM 256
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PD TYNI+I+G C E + +A LL D G P
Sbjct: 257 ERNGCNPDDWTYNILIYGLCGE-KPDEAEELLNDAIVRGFTPT 298
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 115/270 (42%), Gaps = 49/270 (18%)
Query: 83 CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
C+ + + T +I GLC+ M+ G ++ T ++ L K+G++ A
Sbjct: 156 CRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGAR 215
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+LE M R V P+ V++YN +I+GYCK ++DA+ +
Sbjct: 216 RVLEEMPLRGVVPS---------------------VWTYNAMIDGYCKSGRMKDALGIKA 254
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSH-----------------VYTTYIDGLYKNGF 235
M G D TYN L + PD +T I+G K
Sbjct: 255 LMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAER 314
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ +A++V +++ + C L ++ LI+ L K R K A + + N GL P+VV Y
Sbjct: 315 IDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFAN-GLAPNVVIYT 373
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G+CK G+ A + ME G PN
Sbjct: 374 SIIDGYCKVGKVGAALEVFRLMEHEGCRPN 403
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 126/328 (38%), Gaps = 45/328 (13%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
VL+ +++ + T++ L++ LC + ++ EA + ++ + N++ + +
Sbjct: 527 VLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEM 586
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A ++F EM++ KP T T I CK G M G+
Sbjct: 587 IKEGKHDHAKSMFNEMISSGH---KPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVA 643
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PDVVT NV + G M+ A L+ MI PN TY L+ F S V
Sbjct: 644 PDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSL-----VD 698
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++ + +G ++ L M+ G+ A TY+++ I G
Sbjct: 699 AHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSI-----------------IAG 741
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K + EA +F + E LI C I A F M G P
Sbjct: 742 FCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVS-FVTDMIEFGFQP 800
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ +Y+ +I G C EG + KA L D+
Sbjct: 801 HLESYHYLIVGLCDEGDYDKAKSLFCDL 828
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 23/196 (11%)
Query: 152 TLMDGFAWWSK--GCRHDVYSYNILINGYCKDR--------------------NVEDAVS 189
T + F W ++ G RH S+ L+ + R ++ +AV
Sbjct: 70 TALAFFEWVARRPGFRHTAASHAALLQLLARRRAPANYDKLVVSMVSCSDTAEDMREAVD 129
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ + G + + M + + + YT I GL + V EA+ + +
Sbjct: 130 AIQAIRRVGGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQD 189
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C L + T LI GLCK GR+ A + M G+ P V TYN MI G+CK G+ +
Sbjct: 190 GCSLNLHTYTLLIKGLCKEGRIHGARRVLEE-MPLRGVVPSVWTYNAMIDGYCKSGRMKD 248
Query: 310 ANGLLLDMEETGLEPN 325
A G+ ME G P+
Sbjct: 249 ALGIKALMERNGCNPD 264
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 39/273 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+G + P++VT+N I G G + A K++ C+PN T+ L +
Sbjct: 633 LIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFL 692
Query: 68 ALNLFE-EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
++L + V+ G+ ++ T +++ + K G+ P VT + + K
Sbjct: 693 KMSLVDAHYVDTSGMWNWIELDTVWQLLERMVK------HGLNPTAVTYSSIIAGFCKAT 746
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMD---GFAWWSK-----------GCRHDVYSYN 172
++EEA L + M +D++PN Y L+ + K G + + SY+
Sbjct: 747 RLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYH 806
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
LI G C + + + A SL ++L + +N + I N DGL K
Sbjct: 807 YLIVGLCDEGDYDKAKSLFCDLLG----MEDYNHNEVAWKILN------------DGLLK 850
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
G V ++ SA+ N C + ET + + D +
Sbjct: 851 AGHVDFCSQLLSAMENRHCQIDSETYSMVTDNI 883
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 55/354 (15%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------- 65
+++ P ++N+++ LC E R+ E + + PNVIT+ T+
Sbjct: 216 VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGEL 275
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
+A + MV C P+VVT T ++ GL DG +M+ +G P V+
Sbjct: 276 RMACAILARMVITG---CTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSY 332
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS---- 161
N++ L G ++ A+ +L M Q PN TY+TL+DGF + W+
Sbjct: 333 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 392
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
GC+ +V Y +++ +CK A SL +ML E + T+NTL ++
Sbjct: 393 SGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGR 452
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+ Y I GL++ G +A+ + + + +H L++ T N ++
Sbjct: 453 ALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVS 512
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
GLC+ R+ +F M G+ P+ T++ +IH +CKEG+ + A +L M
Sbjct: 513 GLCQT-RMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 565
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 160/385 (41%), Gaps = 83/385 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---- 74
PN+ T+N L++ LC R+ A ++ ++ C P+ +T+ T+ L L+ +E
Sbjct: 157 PNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEV 216
Query: 75 -----------------------MVNEFGVIC-------KPDVVTCTNIIDGLCKDG--- 101
M F V+ +P+V+T T I+D CK G
Sbjct: 217 LAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELR 276
Query: 102 -------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
M+ G P+VVT + L DG++ +A + M+ P+T +YN L+
Sbjct: 277 MACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILI 336
Query: 155 DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
G + GC +V +Y+ LI+G+ K ++ A+S+ +M G +
Sbjct: 337 RGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCK 396
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ Y + M + N PP++ + T I L V A+ V
Sbjct: 397 PNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGV 456
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHG 300
F + H CV T N LI GL + G D HM+ MQ+ G+ +VTYN ++ G
Sbjct: 457 FHEMRRHGCVPNGRTYNELIHGLFREGNCG---DALHMVTEMQSHGIELSLVTYNTVVSG 513
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C+ ++A + M G++PN
Sbjct: 514 LCQTRMSREAMVFVGKMIVQGIQPN 538
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 61/346 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+L R++++ TPN+VTF +L++GL +GR+ +A +++ + P+ +++N L
Sbjct: 280 AILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 339
Query: 65 --------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQ 106
A LN E+ C P+V T + +IDG K G M
Sbjct: 340 CSVGDLKGASSILNSMEQHG------CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 393
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P+VV M D K +A L++ M+ + PNT T+NTL+
Sbjct: 394 GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRA 453
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GC + +YN LI+G ++ N DA+ + EM S GI TYNT+
Sbjct: 454 LGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 513
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + + P++ ++ I K G V A + A+ C
Sbjct: 514 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 573
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
I L+ LC +L A + + M G+ P+ VT+N+++ G
Sbjct: 574 ILVYTILMAELCNQDKLVDAM-TYLLKMLYEGIYPNTVTWNVLVRG 618
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 40/256 (15%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+ P+V T N++ L ++ ++ A +L+ M ++ P+ TY T++ S
Sbjct: 150 MRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIV------SV 203
Query: 163 GCRHD---------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
C+ D SYN ++ C++ +++ S+ +M+ G++ + TY
Sbjct: 204 LCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYT 263
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
T+ M I P+ +T + GL+ +G V +A+ ++ +
Sbjct: 264 TIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAE 323
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ + N LI GLC +G LK A I + + Q+ G P+V TY+ +I GF K G
Sbjct: 324 GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH-GCFPNVRTYSTLIDGFSKAGDLGG 382
Query: 310 ANGLLLDMEETGLEPN 325
A + DM +G +PN
Sbjct: 383 AISIWNDMSRSGCKPN 398
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V + +++ C + +A L K+ + C PN +TFNTL AL +
Sbjct: 397 PNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGV 456
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM C P+ T +I GL ++G M G+ +VT N +
Sbjct: 457 FHEMRRHG---CVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 513
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSKG------CRHD 167
L + EA + MI + + PN T++ ++ + A W G C +
Sbjct: 514 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 573
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ Y IL+ C + DA++ +ML EGI + T+N L +
Sbjct: 574 ILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGV 619
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 158/367 (43%), Gaps = 70/367 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + + P++ T+ LI C G + +A + F ++ C PNV+T+
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYT 554
Query: 63 TLALVALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------ 101
L L LFE M++E C P+VVT T +IDG CK G
Sbjct: 555 ALIHAYLKARKMSSANELFEMMLSEG---CIPNVVTYTALIDGHCKSGQIEKACQIYARM 611
Query: 102 ------------FMMDQG--MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
F +D G P++ T + D L K K++EA LL+VM PN
Sbjct: 612 RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNH 671
Query: 148 CTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF +G +VY+Y+ LI+ KD+ ++ A+ +
Sbjct: 672 IVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
ML N+ P+ +YT IDGL K G EA ++ S + C
Sbjct: 732 MLE-----------------NSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
+ T +IDG K G++ ++ M G P+ VTY ++I+ C G A+ L
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQ-MGAKGCAPNFVTYRVLINHCCAAGLLDDAHQL 833
Query: 314 LLDMEET 320
L +M++T
Sbjct: 834 LDEMKQT 840
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 159/362 (43%), Gaps = 48/362 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + ++ ++ F P+ T++ +I LC ++ A LF+++ P+V T+
Sbjct: 459 GKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTY 518
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A F+EMV + C P+VVT T +I K
Sbjct: 519 TILIDSFCKVGLLQQARKWFDEMVRDG---CAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ +G P+VVT + D K G++E+A + M P+ Y + DG
Sbjct: 576 MLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG------ 629
Query: 163 GCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
R ++++Y L++G CK V++A L M EG + Y+ L
Sbjct: 630 NIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDE 689
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M+ P+ + Y++ ID L+K+ + A+KV S + + C + +ID
Sbjct: 690 AQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMID 749
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK+G+ A+ + M M+ G P+VVTY MI GF K G+ K L+ M G
Sbjct: 750 GLCKVGKTDEAYRLMSM-MEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCA 808
Query: 324 PN 325
PN
Sbjct: 809 PN 810
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 147/357 (41%), Gaps = 70/357 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
P+ FNSLI C G A +L KK+ C P + +N L L +L++
Sbjct: 367 PSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVL 426
Query: 73 EEMVNEFGVICKPDV----VTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
E +G + V V +N+ LC G MM +G PD T + +
Sbjct: 427 ELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKV 486
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GC 164
L K++ A L E M V P+ TY L+D F W+ + GC
Sbjct: 487 IGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGC 546
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+V +Y LI+ Y K R + A L MLSEG P+ YT
Sbjct: 547 APNVVTYTALIHAYLKARKMSSANELFEMMLSEG-----------------CIPNVVTYT 589
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE----------------TCNCLIDGLCKI 268
IDG K+G + +A ++++ + + + ++ T L+DGLCK
Sbjct: 590 ALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKA 649
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++K A D+ +M G P+ + Y+ +I GFCK G+ +A + M E G PN
Sbjct: 650 HKVKEARDLLD-VMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 144/336 (42%), Gaps = 50/336 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+ +L+ GLC ++ EA L ++V C+PN I ++ L + +E
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693
Query: 79 FGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
F + + P+V T +++ID L KD M++ P+V+ M D L K
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+ +M ++ +PN TY ++DGF +KGC + +
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +LIN C ++DA L EM TY MA Y I+G
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEM--------KQTYWPKHMA---------GYRKVIEG- 855
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT-P 289
+ F++ ++ + I + V I LID CK GRL++A ++ + +
Sbjct: 856 FNREFII-SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAA 914
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D Y+ +I + KA L DM + G P
Sbjct: 915 DKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 126/330 (38%), Gaps = 58/330 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F + V + +I GLC EA ++ C PNV+T+ L
Sbjct: 295 FKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLC------------ 342
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G + K + C I+ M+ +G P N + + G A LL+ M
Sbjct: 343 -GCLRKRQLGRCKRIL------SMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM 395
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY-----SYNILINGY--------------- 178
P YN L+ G K DV +Y +++ +
Sbjct: 396 GDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCL 455
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C E A S+ REM+S+G D +TY+ + M N+V PD
Sbjct: 456 CGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDV 515
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT ID K G + +A K F + C + T LI K ++ A ++F M
Sbjct: 516 FTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEM 575
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ + G P+VVTY +I G CK GQ +KA
Sbjct: 576 ML-SEGCIPNVVTYTALIDGHCKSGQIEKA 604
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 46/280 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L R+L + PN++ + +I GLC G+ EA RL + C PNV+T+
Sbjct: 728 VLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA------ 781
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG K D C ++ M +G P+ VT V+ ++ G ++
Sbjct: 782 -----MIDGFGKAGKVD--KCLELMRQ------MGAKGCAPNFVTYRVLINHCCAAGLLD 828
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---SKGCRHDVY---------SYNILING 177
+A+ LL+ M Q + Y +++GF S G ++ +Y ILI+
Sbjct: 829 DAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIPAYRILIDS 888
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+CK +E A+ L +EM S T+Y+ D +Y++ I+ L V
Sbjct: 889 FCKAGRLELALELHKEMSS------CTSYSA---------ADKDLYSSLIESLSLASKVD 933
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
+A ++++ + + + L+ GL +I R + A +
Sbjct: 934 KAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQL 973
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G + +YN L+ + + ++ A + REM G D T
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA 286
Query: 210 --FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ D+ +YT I GL + EAM S + + C+ + T L+ G +
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+L I M++ G P +N +IH +C+ G + A LL M + G +P
Sbjct: 347 KRQLGRCKRILSMMI-TEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQP 402
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 99/295 (33%), Gaps = 75/295 (25%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M D G D TL L K G+ EA L+E + + +T Y ++ G
Sbjct: 258 MSDSGFNMDGYTLGCFVHLLCKAGRWREALALIE---KEEFKLDTVIYTQMISGLCEASL 314
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S C +V +Y IL+ G + R + + M++EG +N+
Sbjct: 315 FEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNS 374
Query: 209 LFMAINNV------------------PPDSHVYTTYIDGLYKNGF-----VLE-AMKVFS 244
L A P VY I G+ N VLE A K +
Sbjct: 375 LIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYG 434
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML----------------------- 281
+ + VL + L LC G+ + A+ I +
Sbjct: 435 EMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNAS 494
Query: 282 -----------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ + PDV TY I+I FCK G Q+A +M G PN
Sbjct: 495 KVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPN 549
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 71/344 (20%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL---------NLFEEMVN 77
N+L++ G EA +LF + P+VITFN+L L+ L ++F+EM
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160
Query: 78 EFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKDG 126
+GV PD T +I G CK+ M+D+G R PDVVT N + D L + G
Sbjct: 161 TYGVT--PDTYTFNILIRGFCKNS-MVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAG 217
Query: 127 KMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
K+ A+ +++ M++ +D++P+ TY T L+ GYC + +
Sbjct: 218 KVRIAHNVVKGMVKKMKDLSPDVVTYTT---------------------LVRGYCMKQEI 256
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVP-------------------PDSHVYTT 225
++A+ + EM+S G++ + TYNTL + V PD+ Y T
Sbjct: 257 DEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNT 316
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF------H 279
++ G EA+K+F + K T + LI LC+ G + A +F
Sbjct: 317 LMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDED 376
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+L+++ G TP V YN + CK G+ KA + + + G +
Sbjct: 377 ILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQ 420
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 141/328 (42%), Gaps = 58/328 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
TP+ TFN LI+G C + E R FK+++ F C+P+V+T+NTL
Sbjct: 165 TPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVD------------- 211
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ V N++ G+ K M D + PDVVT + +++EA + E M+
Sbjct: 212 GLCRAGKVRIAHNVVKGMVKK--MKD--LSPDVVTYTTLVRGYCMKQEIDEALVVFEEMV 267
Query: 140 QRDVNPNTCTYNTLMDGF---------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
R + PN TYNTL+ G A +G D +YN L+N C N
Sbjct: 268 SRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNF 327
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
++A+ + ++M V PDS Y+ I L + G A ++F
Sbjct: 328 DEALKMFKKMKEL-----------------KVQPDSATYSVLIRNLCQRGDFERAEQLFD 370
Query: 245 AIGNHKCVLTIETC-------NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+ + +L + C N + D LCK G+ A +F LM+ T D +Y +
Sbjct: 371 KLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKG--TQDPPSYKTL 428
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G CKEG + LLL M P+
Sbjct: 429 IIGHCKEGTFEAGYKLLLFMLRRDYVPD 456
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N L+ Y +A+ L M S G+ T+N+L + +
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
V PD++ + I G KN V E + F + C + T N L+DGLC+ G+++
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220
Query: 273 IAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IA ++ M+ + L+PDVVTY ++ G+C + + +A + +M GL+PN
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPN 274
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 98/245 (40%), Gaps = 40/245 (16%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
M G+ P V+T N + L K G+ A+ + + M TY
Sbjct: 121 SLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEM--------CGTY---------- 162
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------- 209
G D Y++NILI G+CK+ V++ +EM D TYNTL
Sbjct: 163 --GVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220
Query: 210 ---------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
+ ++ PD YTT + G + EA+ VF + + T N
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GLC++ + +I + G PD TYN +++ C G +A + M+E
Sbjct: 281 LIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKEL 340
Query: 321 GLEPN 325
++P+
Sbjct: 341 KVQPD 345
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 73/338 (21%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-- 66
+L G + F P+ T+N+L+ C G EA ++FKK+ P+ T++ L
Sbjct: 297 ILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNL 356
Query: 67 -------VALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
A LF+++ +E ++ C P V I D LCK+G +M
Sbjct: 357 CQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMK 416
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G + D + + K+G E LL M++RD P+ TY L++GF KG
Sbjct: 417 KGTQ-DPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGF--LQKG-- 471
Query: 166 HDVYSYNILINGYCKDRNVEDA----VSLCREMLSEGIRADATTYNTLFMAI-------N 214
+ +Y L +R ++ + S+ +LSE ++ D + F+ +
Sbjct: 472 EPILAYKTL------ERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQ 525
Query: 215 NVPPDSHVYT------------TYIDGLYKNGF----------------VLEAMKVFSAI 246
N+ +H ++ LY NG+ +L+A K+ S
Sbjct: 526 NINLSTHTMRLLFGSGLRIKAFQIVELLYDNGYMVDMEELIGFICQNGKLLDAQKMLSFC 585
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ I CN +I+GLCK+ R A+ +++ML++
Sbjct: 586 LEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYMLVEK 623
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 49/299 (16%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE 73
M +P++VT+ +L++G C + I EA +F+++ PN IT+NTL L + F+
Sbjct: 233 MKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFD 292
Query: 74 EMVNEFGVICK-----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
++ G PD T +++ C G M + ++PD T +V+
Sbjct: 293 KIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVL 352
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
NL + G E A L + + D+ GC V +YN + +
Sbjct: 353 IRNLCQRGDFERAEQLFDKLSDEDI--------------LLRDDGCTPLVAAYNPIFDFL 398
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
CK+ A + R+++ +G + PP Y T I G K G
Sbjct: 399 CKNGKTHKAERVFRQLMKKGTQD---------------PPS---YKTLIIGHCKEGTFEA 440
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
K+ + V ET LI+G + G +A+ ++++ L V ++I+
Sbjct: 441 GYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSIL 499
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 21/173 (12%)
Query: 157 FAWWSK-GCRHDVYSYNILIN--GYCKDRNVEDAVSLCREMLSEG-IRADATTYNTLFMA 212
F W S+ G HD SY ++++ G + N+ E S G ++ + NTL +
Sbjct: 47 FNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRS 106
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
N G EA+K+FS + + ++ T N L+ L K GR
Sbjct: 107 YGNA-----------------GLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTN 149
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A +F + G+TPD T+NI+I GFCK + +M EP+
Sbjct: 150 MAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPD 202
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 164/382 (42%), Gaps = 89/382 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------- 64
R+ + P+ VT+ +++ GL G ++K+ C+P ++T+ L
Sbjct: 96 RLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAH 155
Query: 65 -ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
A ++FEEM+ + KPD++ +++IDGL K G M+ +G P V
Sbjct: 156 KVERACDVFEEMIRKGH---KPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAV 212
Query: 114 TLNVMTDNLSK-----------------------------------DGKMEEANCLLEVM 138
+ L K GK+EEA ++E M
Sbjct: 213 AYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEM 272
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
RD P+T +Y ++ KGC+ D+++Y I+I+ +CK+ ++
Sbjct: 273 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSM 332
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
A + R M V P+ ++YT +DG K+ + EA++++
Sbjct: 333 AAATHVLR-----------------LMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQ 375
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCK 303
I + + T N +I+ LCK+ ++ A ++ M + L P +VTY+++IHG K
Sbjct: 376 RILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGK 435
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G ++A LL +M + G+ P+
Sbjct: 436 VGMEERAFDLLAEMIDNGVIPD 457
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 144/347 (41%), Gaps = 58/347 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ ++ P V + S++ GLC GRI EA + +++ P V T+
Sbjct: 190 GRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTY 249
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
+ + A + EEM + C PD ++ T I+ L G
Sbjct: 250 SFIVTGYIGMGKVEEAFAVMEEMADR---DCAPDTISYTMFIEALYSIGRREEAEKVFET 306
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+++G +PD+ T ++ DN K+G M A +L +M + V PN Y +MDGF S+
Sbjct: 307 MVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 366
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREM--LSEGIRADATTY 206
G +YN +IN CK + +++A+ L REM E + TY
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ + M N V PD YT+ I L G V AM++ +
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 486
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
T L+ LC+ + AWD+ +M+N G TP+ T+
Sbjct: 487 AGIFPDDHTYGTLVQILCR-SDVDAAWDLLQEMMRN-GHTPNEFTFK 531
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 32/225 (14%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
GF P+V + N++ + E N LL M R + N T
Sbjct: 18 GFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARGITSNGAT----------- 66
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+ ++++ C R+++ AVS E R LF AI PDS
Sbjct: 67 ----------HGVILSALCARRDLDKAVSYFNSRTEEACR--------LFEAIE--APDS 106
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT +DGL+K G ++ + + KC T+ T L+DGLCK +++ A D+F
Sbjct: 107 VTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEE 166
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G PD++ Y+ +I G K G+ +A L+ M G P
Sbjct: 167 MIRK-GHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPT 210
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 47/353 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +V + N+ TFN +I LC EG++ +A + F P ++T
Sbjct: 204 LNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVT 263
Query: 61 FNTLALVALNLFEEMVNEFGVIC-------KPDVVTCTNIIDGLCKDGF-------MMDQ 106
+NTL + +L + +I +PD+ T I+ +C +G M
Sbjct: 264 YNTL-VQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGI 322
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ PD V+ N++ S +G +E A + M+++ + P TYNTL+ G
Sbjct: 323 GLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAA 382
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
KG D +YNI+INGYC+ + + A +L EM+++GI+
Sbjct: 383 EILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIK------------ 430
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P YT+ I L + EA ++F + + N L+DG C G +
Sbjct: 431 -----PTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMD 485
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + M + PD VTYN ++ G C EG+ ++A L+ +M+ G++P+
Sbjct: 486 RAFSLLKE-MDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 537
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 50/285 (17%)
Query: 85 PDVVTCTNIIDGLCK------------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P TC +I+ L + D + M+ ++ +V T N+M + L K+GK+++A
Sbjct: 189 PKTETCNHILSLLSRLNRIENAWVFYADMYRME--IKSNVYTFNIMINVLCKEGKLKKAK 246
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGY 178
L +M + P TYNTL+ G++ SKG + D+ +YN +++
Sbjct: 247 GFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWM 306
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
C N A + REM G+ D+ +YN L +N + P
Sbjct: 307 C---NEGRASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTF 363
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ Y T I GL+ + A + I VL T N +I+G C+ G K A+ + H
Sbjct: 364 YTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFAL-HD 422
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ P TY +I+ C+ + ++A+ L + G++P+
Sbjct: 423 EMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPD 467
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F ++ P T+N+LI GL E +I A L +++ + +T+
Sbjct: 342 GDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTY 401
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N + A A L +EM+ + G+ KP T T++I LC+ +
Sbjct: 402 NIVINGYCQHGDAKKAFALHDEMMTD-GI--KPTQFTYTSLIYVLCRRNKTREADELFEK 458
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+GM+PD+V +N + D G M+ A LL+ M + +++P+ TYN LM G
Sbjct: 459 VVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGK 518
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+G + D SYN LI+GY K + + A + EMLS G TYN
Sbjct: 519 FEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNA 578
Query: 209 LFMAINN 215
L ++
Sbjct: 579 LLKGLSK 585
>gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 165/377 (43%), Gaps = 57/377 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++L F P+++T N L+ GLC G + +A L K++ PN TF
Sbjct: 139 GKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEMLEIGPSPNCATF 198
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
NT AL LF M ++ GV KP+ VT ++ LCK G + D
Sbjct: 199 NTFIKGYCLLNNVDKALYLFSSM-SDSGV--KPNRVTLNILVHALCKRGLLEDAKKLLGE 255
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW- 159
+ R +++T ++ D K+G M +A + M Q + ++ YN L+ GF
Sbjct: 256 LLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYNVLIHGFCLT 315
Query: 160 -------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+G D+++YN LI+G CK + +A + ML G+ D +Y
Sbjct: 316 RNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISY 375
Query: 207 NTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ + ++ P++HV+ IDG + G A + + +
Sbjct: 376 KIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLS 435
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V + T N LI K G + A+ + M++ + GL PDV+TYN++I C G+
Sbjct: 436 FGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCH-GLFPDVITYNLLIGTACNAGRIS 494
Query: 309 KANGLLLDMEETGLEPN 325
A L +M +G EP+
Sbjct: 495 IAVQLYYEMLRSGHEPD 511
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 146/351 (41%), Gaps = 57/351 (16%)
Query: 28 SLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMVNE 78
SL++ LC G++ A L +KL P+++T N L N L +EM+ E
Sbjct: 130 SLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQKADCLIKEML-E 188
Query: 79 FGVICKPDVVTCTNIIDGLC------KDGF----MMDQGMRPDVVTLNVMTDNLSKDGKM 128
G P+ T I G C K + M D G++P+ VTLN++ L K G +
Sbjct: 189 IGP--SPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVHALCKRGLL 246
Query: 129 EEANCLLEVMI--QRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYN 172
E+A LL ++ N T LMDG +A D +YN
Sbjct: 247 EDAKKLLGELLDDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNNTLMDSVAYN 306
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
+LI+G+C RN++ A S +ML G+ D TYNTL M
Sbjct: 307 VLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEACYIHDVMLRM 366
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
V PD Y I GL G VL+A + + V N +IDG + G A
Sbjct: 367 GVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGFARCGDSANA 426
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ I ++ + G+ P+V TYN +IH K G A L M GL P+
Sbjct: 427 FSIRDQML-SFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPD 476
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 42/238 (17%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD+ T +I GLCK G M+ G+ PD ++ ++ L G + +AN
Sbjct: 335 PDIFTYNTLISGLCKAGKLYEACYIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEH 394
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCK 180
L M+++ + P +N ++DGFA S G +V++YN LI+ K
Sbjct: 395 LHCMLEKSMVPEAHVWNLIIDGFARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVK 454
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
N+ DA SL + ML G+ D TYN L N S Y + L
Sbjct: 455 TGNIVDAYSLKKMMLCHGLFPDVITYNLLIGTACNAGRISIAVQLYYEMLRS-------- 506
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
G+ ++T LI GLC G +K A ++F L QN GLT D V + ++I
Sbjct: 507 ------GHEPDIITYTE---LIRGLCMRGNMKEAKELFAKL-QNTGLTVDHVPFQLLI 554
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN 50
GR S L +L S P+++T+ LI+GLC G + EA LF KL
Sbjct: 491 GRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGNMKEAKELFAKLQ 539
>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
gi|194696880|gb|ACF82524.1| unknown [Zea mays]
gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
Length = 421
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 163/344 (47%), Gaps = 59/344 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----------ALVA 68
+P++ TFN +I G C G++ +A + K ++ + P+V T+NTL +
Sbjct: 65 SPDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYH 124
Query: 69 LN-LFEEMVNEFGVICKPDVVTCTNIIDG--LCKDGFMMDQ----------GMRPDVVTL 115
++ L +EM+ + G+ PDVVT +I+G LC++G + D G+ + T+
Sbjct: 125 VDALLKEMI-QAGI--SPDVVTFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTM 181
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWS 161
N + + K G M EA ++ + QR + PN TYNTL+DG+ A
Sbjct: 182 NSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAG 241
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
KG +V +YN LI G+ R+ L EM +G++AD TYN L
Sbjct: 242 KGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVL------------ 289
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
I L G V +A+K+ + N +I+G C+ G + A +I +
Sbjct: 290 -----IGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEI-RLR 343
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ +VVTYN+ + FCK G+ +AN +L +M E GL PN
Sbjct: 344 MEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLEKGLVPN 387
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 153/338 (45%), Gaps = 59/338 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRI---LEAARLFKKLNVFCCDPNVITFNTL-----------A 65
P++ T+N+LI G C G++ L K++ P+V+TFN L
Sbjct: 100 APSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLINGYWLCREGKV 159
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTL 115
++ L EEM E G+ C + T ++++G CK G M++ +GM+P+V+T
Sbjct: 160 EDSIKLVEEM-EELGLACI--LSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITY 216
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----WWS---------- 161
N + D + GKM+EA + M + ++PN TYN L+ GF W S
Sbjct: 217 NTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKE 276
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
KG + DV +YN+LI C V AV L EM+ G+ YNT+
Sbjct: 277 KGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTI------------ 324
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
I+G + G A ++ + K + T N + CK+G++ A + + +
Sbjct: 325 -----INGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEM 379
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
++ GL P+ +TY I+ G ++G +G D+ +
Sbjct: 380 LEK-GLVPNRITYEIINSGMIEKGYVPDISGYAADVSK 416
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 116/289 (40%), Gaps = 73/289 (25%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN---------------------- 146
RP ++N + L + +++ A+ ++R V+P+
Sbjct: 30 RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGD 89
Query: 147 -------------TCTYNTLMDGFAWWSK-----------------GCRHDVYSYNILIN 176
TYNTL+DG+ + G DV ++N+LIN
Sbjct: 90 VAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLIN 149
Query: 177 GY--CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
GY C++ VED++ L EM G+ +T N++ +A +
Sbjct: 150 GYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGM 209
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ Y T +DG + G + EA A+ ++T NCLI G +
Sbjct: 210 KPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSG 269
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ M+ G+ DVVTYN++I C +G+ +KA LL +M E GLEP
Sbjct: 270 LLDE-MKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPK 317
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 55/354 (15%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------- 65
+++ P ++N+++ LC E R+ E + + PNVIT+ T+
Sbjct: 193 VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGEL 252
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
+A + MV C P+VVT T ++ GL DG +M+ +G P V+
Sbjct: 253 RMACAILARMVITG---CTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSY 309
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS---- 161
N++ L G ++ A+ +L M Q PN TY+TL+DGF + W+
Sbjct: 310 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 369
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
GC+ +V Y +++ +CK A SL +ML E + T+NTL ++
Sbjct: 370 SGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGR 429
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+ Y I GL++ G +A+ + + + +H L++ T N ++
Sbjct: 430 ALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVS 489
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
GLC+ R+ +F M G+ P+ T++ +IH +CKEG+ + A +L M
Sbjct: 490 GLCQT-RMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 542
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 141/334 (42%), Gaps = 55/334 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P+ VT+ +++ LC R+ EA + + P ++N + L F M F
Sbjct: 169 PDDVTYATIVSVLCKLDRLDEATEVLAAM-----PPVAASYNAIVLALCREFR-MQEVFS 222
Query: 81 VIC-------KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
V+ +P+V+T T I+D CK G M+ G P+VVT + L
Sbjct: 223 VVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLF 282
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
DG++ +A + M+ P+T +YN L+ G + GC +V
Sbjct: 283 DDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVR 342
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y+ LI+G+ K ++ A+S+ +M G + P+ VYT +D
Sbjct: 343 TYSTLIDGFSKAGDLGGAISIWNDMSRSGCK-----------------PNVVVYTNMVDV 385
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K +A + + C T N LI LC R+ A +FH M+ G P
Sbjct: 386 FCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHE-MRRHGCVP 444
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ TYN +IHG +EG A ++ +M+ G+E
Sbjct: 445 NGRTYNELIHGLFREGNCGDALHMVTEMQSHGIE 478
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 61/346 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+L R++++ TPN+VTF +L++GL +GR+ +A +++ + P+ +++N L
Sbjct: 257 AILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 316
Query: 65 --------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQ 106
A LN E+ C P+V T + +IDG K G M
Sbjct: 317 CSVGDLKGASSILNSMEQHG------CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 370
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P+VV M D K +A L++ M+ + PNT T+NTL+
Sbjct: 371 GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRA 430
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GC + +YN LI+G ++ N DA+ + EM S GI TYNT+
Sbjct: 431 LGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 490
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + + P++ ++ I K G V A + A+ C
Sbjct: 491 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 550
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
I L+ LC +L A + + M G+ P+ VT+N+++ G
Sbjct: 551 ILVYTILMAELCNQDKLVDAM-TYLLKMLYEGIYPNTVTWNVLVRG 595
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 47/264 (17%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMRPDVVTLNVMTDN 121
A + +EM + C PD VT I+ LCK + + M P + N +
Sbjct: 154 AARKMLDEMARKG---CPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLA 210
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L ++ +M+E ++ M+ R + PN V +Y +++ +CK
Sbjct: 211 LCREFRMQEVFSVVSDMVGRGLQPN---------------------VITYTTIVDAFCKA 249
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ A ++ M+ I P+ +T + GL+ +G V +A+
Sbjct: 250 GELRMACAILARMV-----------------ITGCTPNVVTFTALVRGLFDDGRVHDALD 292
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
++ + + + N LI GLC +G LK A I + + Q+ G P+V TY+ +I GF
Sbjct: 293 MWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH-GCFPNVRTYSTLIDGF 351
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
K G A + DM +G +PN
Sbjct: 352 SKAGDLGGAISIWNDMSRSGCKPN 375
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V + +++ C + +A L K+ + C PN +TFNTL AL +
Sbjct: 374 PNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGV 433
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM C P+ T +I GL ++G M G+ +VT N +
Sbjct: 434 FHEMRRHG---CVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 490
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSKG------CRHD 167
L + EA + MI + + PN T++ ++ + A W G C +
Sbjct: 491 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 550
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ Y IL+ C + DA++ +ML EGI + T+N L +
Sbjct: 551 ILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGV 596
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 149/326 (45%), Gaps = 61/326 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F PN+V +N+LI G C G + A ++F+ ++ C PNV T+ L A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF MV E G+ +P+VVT T +I G C +G M G+ P+ T +V+
Sbjct: 268 VLFSRMV-EAGL--EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D L K K+EEA L ++++ V N Y +L+DG C
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL---------------------C 363
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K ++ A L ++M+SEG PD+H Y++ IDGL + + +A
Sbjct: 364 KTGKIDAADELMQKMISEGFV-----------------PDAHSYSSLIDGLCRQKKLSQA 406
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + T +ID L + + IF ++ G+ PD+VTY + +
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIAT-GINPDIVTYTVFVR 465
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
+C+EG+ + A +++ M + G+ PN
Sbjct: 466 SYCEEGRMEDAESMIVQMVDRGVFPN 491
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 138/349 (39%), Gaps = 56/349 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L +L + P+ + S + G C G + A R+F + + C T+ L L+
Sbjct: 95 LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154
Query: 69 LNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
+ E + F C PD ++ GLC+ G M G P++V
Sbjct: 155 AGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D G+ME A + E MDG C +V +Y L
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEG----------------MDG-----NRCSPNVRTYTEL 253
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
I+G CK VE A+ L M+ G+ + TY L M N +
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ ++ ID L K V EA ++ + LIDGLCK G++ A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ G PD +Y+ +I G C++ + +A +L DM E G++ +
Sbjct: 374 LMQKMISE-GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 49/288 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+ LG ++ N V + SLI GLC G+I A L +K+ P+ ++++L
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL 397
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
L L E + E G+ P VT T IID L ++ M+ G+ P
Sbjct: 398 CRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGINP 455
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D+VT V + ++G+ME+A ++ M+ R V PN TYNTL+ G+A
Sbjct: 456 DIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTF 515
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG + + SY +L+ K + +++V + + +++ + Y
Sbjct: 516 EVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWK--IADMKDLQESNY---------- 563
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
D V+ I GL + G V E + S + H + T N +I G
Sbjct: 564 --DEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMITG 608
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------------ 208
S+ ++ +Y LIN YC ++ A +L G+ D+ Y +
Sbjct: 65 SRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLT 124
Query: 209 ------LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ M + + YT + GL G V EAM VF + C ++
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMV 184
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ GR + A + M N G P++V YN +I G+C G+ + A + M+
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSN-GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRC 243
Query: 323 EPN 325
PN
Sbjct: 244 SPN 246
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 139/298 (46%), Gaps = 48/298 (16%)
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNV 117
L++F++M+ PDV C I+ + +D +M + G++P +VT N
Sbjct: 490 LSVFDKMIKSR---LSPDVKNCNRILR-ILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 545
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKG 163
+ D+ K GK+++ LL M +R PN TYN L++G + G
Sbjct: 546 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 605
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ Y+YN LI GY + +A+SL EM+ +G TYN+
Sbjct: 606 LKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAM 665
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M NN+ PD Y T I G + G +++A +F + + TI T N L+DGL
Sbjct: 666 QQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGL 725
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
C+ G L++A + + M N G+ PD+VTY I+++G CK G A +M GLE
Sbjct: 726 CRQGELEVAQQL-KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLE 782
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 79/323 (24%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ ++ M EFG+ KP +VT ++D CK G M +G P+ VT NV
Sbjct: 524 AVEVYRTM-GEFGI--KPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 580
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ + LSK G+ E+A L+ M++ + + TYN L+ G+ KG
Sbjct: 581 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKG 640
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------F 210
V +YN I G CK + DA+ +ML+ + D +YNTL F
Sbjct: 641 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 700
Query: 211 MAINNVP-----PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ + + P Y T +DGL + G + A ++ + N I T L++G
Sbjct: 701 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 760
Query: 266 CKIGRLKIAWDIFHMLMQN----------------------------------PGLTPDV 291
CK+G L +A + F ++ G PD+
Sbjct: 761 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 820
Query: 292 VTYNIMIHGFCKEGQHQKANGLL 314
+ YN+++ G CK G ++A+ LL
Sbjct: 821 IIYNVVVDGLCKLGNLEEASELL 843
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 123/297 (41%), Gaps = 54/297 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFK-------KLNVFCC 54
G+ G LL + PN VT+N LI GL +G +A L K++ +
Sbjct: 554 GKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTY 613
Query: 55 DPNVITFNTLALVA--LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+P + + L+A L+L EEMV + P V T + I GLCK G M D
Sbjct: 614 NPLIYGYFNKGLLAEALSLQEEMVLKGA---SPTVATYNSFIYGLCKLGRMSDAMQQLSD 670
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+ PDVV+ N + + G + +A L + + + P TYNTL+DG
Sbjct: 671 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 730
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
++G D+ +Y IL+NG CK ++ A EML EG+ D+ Y T
Sbjct: 731 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYAT 790
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
M PPD +Y +DGL K G + EA ++ G
Sbjct: 791 RIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKDG 847
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 22/176 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR S L +L + P++V++N+LI G C G +++A LF +L P ++T
Sbjct: 658 LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVT 717
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NTL VA L EM+NE G+ PD+VT T +++G CK G
Sbjct: 718 YNTLLDGLCRQGELEVAQQLKVEMINE-GI--APDIVTYTILVNGSCKMGSLSMAQEFFD 774
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
M+ +G+ D K G A L E M+ + P+ YN ++DG
Sbjct: 775 EMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGL 830
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K V + + VF + + ++ CN ++ L + A +++ M G+ P +
Sbjct: 482 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRT-MGEFGIKPTI 540
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VTYN ++ +CK G+ Q+ LL +M+ G PN
Sbjct: 541 VTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPN 574
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 160/361 (44%), Gaps = 44/361 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG+ F ++ ++ F P+ T++ +I LC ++ +A LF+++ +P+V T
Sbjct: 266 MGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYT 325
Query: 61 FNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNIIDGLCK--------DGF--MM 104
+ L + L E+ + F + C +VVT T ++ K D F M+
Sbjct: 326 YTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMI 385
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY--NTLMDGFAWWSK 162
D G P+ +T + + D L K G++++A + +I N + Y D A
Sbjct: 386 DAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIA---- 441
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
+V +Y LI+G CK V DA L MLS G + Y+ L
Sbjct: 442 ---PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNA 498
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M+ P H YT+ ID ++K+ + AMKV S + C + T +IDG
Sbjct: 499 QEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDG 558
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LC+IG + A + M M+ G +P+VVTY +I G K G+ + L + M G P
Sbjct: 559 LCRIGECQKALKLLSM-MEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAP 617
Query: 325 N 325
N
Sbjct: 618 N 618
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 150/390 (38%), Gaps = 75/390 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ F+L + P++ T+ LI C G I +A F ++ C NV+T+
Sbjct: 303 KVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYT 362
Query: 63 TLALVAL---------NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------- 106
L L ++F M++ C P+ +T + ++DGLCK G +
Sbjct: 363 ALLHAYLKAKQLPQASDIFNRMID---AGCPPNTITYSALVDGLCKAGEIQKACEVYTKL 419
Query: 107 -------------------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ P+VVT + D L K K+ +A LL+ M+ PN
Sbjct: 420 IGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNH 479
Query: 148 CTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
Y+ L+DGF K G V++Y LI+ KDR ++ A+ + +
Sbjct: 480 IIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQ 539
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
M+ + TY + M P+ YT IDGL K+G
Sbjct: 540 MVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGK 599
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT-Y 294
V ++++F + C T LI+ C G L A + + Q P + Y
Sbjct: 600 VDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQT--YWPKYLQGY 657
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ GF K + + GLL ++E G P
Sbjct: 658 CSVVQGFSK--KFIASLGLLEELESHGTVP 685
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 161/393 (40%), Gaps = 85/393 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L R+ + PN+VT+ +L+ G + ++ R+ + C+PN FN+L
Sbjct: 129 FLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYC 188
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL----- 115
A L + M + C P V I +C ++ PD++ L
Sbjct: 189 NARDYPYAYKLLKRMAD---CGCPPGYVAYNIFIGSICGG----EELPSPDLLALAEKVY 241
Query: 116 -----------NVMTDNLSK----DGKMEEANCLLEVMIQRDVNPNTCTYNTLM------ 154
V T N ++ GK + A +++VM+ + P+T TY+ ++
Sbjct: 242 EEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEA 301
Query: 155 ----DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
F + S G DVY+Y ILI+ +CK +E A S EM S G A+ TY
Sbjct: 302 MKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTY 361
Query: 207 NTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-- 246
L A PP++ Y+ +DGL K G + +A +V++ +
Sbjct: 362 TALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIG 421
Query: 247 ------------GNHKCVLT--IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G H + + T LIDGLCK ++ A ++ ++ N G P+ +
Sbjct: 422 TSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSN-GCEPNHI 480
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y+ +I GFCK G+ A + L M + G P
Sbjct: 481 IYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPT 513
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 142/339 (41%), Gaps = 53/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
PN+VT+ +LI GLC ++++A L + C+PN I ++ L + +
Sbjct: 441 APNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQE 500
Query: 78 EFGVICK----PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLS 123
F + K P V T T++ID + KD M++ P+VVT M D L
Sbjct: 501 VFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLC 560
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
+ G+ ++A LL +M ++ +PN TY L+DG +KGC +
Sbjct: 561 RIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYV 620
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+Y +LIN C +++A SL EM TY P Y + + G
Sbjct: 621 TYRVLINHCCAAGLLDEAHSLLSEM--------KQTY---------WPKYLQGYCSVVQG 663
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K + ++ + + +H V LID K GRL+ A ++ H M +
Sbjct: 664 FSKK--FIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALEL-HKEMMELSSSL 720
Query: 290 DVVT---YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + Y +I C Q +KA L ++ G+ P
Sbjct: 721 NITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPE 759
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 138/361 (38%), Gaps = 54/361 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ GF + + S F + T + LC EGR +A + ++ + F D + T
Sbjct: 54 GQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIERED-FKLDTVLCTQ 112
Query: 62 NTLALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQG 107
L+ +LF+E ++ + C P+VVT ++ G K MM +G
Sbjct: 113 MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEG 172
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
P+ N + + A LL+ M P YN + + D
Sbjct: 173 CNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPD 232
Query: 168 VYS-----YNILINGYCKDRNVED---------------AVSLCREMLSEGIRADATTYN 207
+ + Y ++ C V A + + M+ +G D +TY+
Sbjct: 233 LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYS 292
Query: 208 T----------------LFMAINNVP--PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
LF + +V PD + YT ID K G + +A F + +
Sbjct: 293 KVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSI 352
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
C + T L+ K +L A DIF+ ++ + G P+ +TY+ ++ G CK G+ QK
Sbjct: 353 GCSANVVTYTALLHAYLKAKQLPQASDIFNRMI-DAGCPPNTITYSALVDGLCKAGEIQK 411
Query: 310 A 310
A
Sbjct: 412 A 412
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 125/334 (37%), Gaps = 74/334 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALVALNLFEEMV 76
+ P+ T+N+L++ L T G++ R+ K+++ FC D
Sbjct: 36 YRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMD--------------------- 74
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD-------QGMRPDVVTLNVMTDNLSKDGKME 129
+F V C LCK+G D + + D V M L + +
Sbjct: 75 -KFTVGC---------FAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFD 124
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF------AWWSK--------GCRHDVYSYNILI 175
EA L M PN TY TL+ GF W + GC + +N L+
Sbjct: 125 EAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLV 184
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVP-PDSHVYTTYIDGLY 231
+ YC R+ A L + M G YN +I +P PD
Sbjct: 185 HSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPD------------ 232
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
+ A KV+ + CVL LC +G+ +A+ I ++M G PD
Sbjct: 233 ---LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMM-GKGFVPDT 288
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+ +I C+ + +KA L +M+ G+ P+
Sbjct: 289 STYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPD 322
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 31/211 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEE 74
+PN+VT+ +LI GL G++ + +LF +++ C PN +T+ L A L+
Sbjct: 581 SPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHS 640
Query: 75 MVNEFGVICKPDVVT-CTNIIDGLCKD-----GFMMD---QGMRPDVVTLNVMTDNLSKD 125
+++E P + +++ G K G + + G P ++ DN SK
Sbjct: 641 LLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKA 700
Query: 126 GKMEEANCLLEVMIQRDVNPNT-------------CTYNTLMDGFAWWS----KGCRHDV 168
G++EEA L + M++ + N C + L F +S KG ++
Sbjct: 701 GRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPEL 760
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+ LI G K +A+ LC + EG+
Sbjct: 761 SVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 164/398 (41%), Gaps = 103/398 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAA------------------------------------- 43
P +VT+N+L+ EGR EA+
Sbjct: 241 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAA 300
Query: 44 ------RLFKKLNVFCCDPNVITFNTLALV----ALNLFEEMVNEFGVICKPDVVTCTNI 93
RL KK + F +P + V AL + EM NE G++ P +VT I
Sbjct: 301 KLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQM--EMENE-GIM--PTLVTYNAI 355
Query: 94 IDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I GL K M G+ PD++T N M + K G ++EA LL + + +
Sbjct: 356 IHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGL 415
Query: 144 NPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
P TYNTL+DG+ +GC DV +Y IL+NG K RN+ A
Sbjct: 416 APTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMARE 475
Query: 190 LCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLY 231
EMLS+G++ D YNT M + + PD+ Y IDGL
Sbjct: 476 FFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLC 535
Query: 232 KNGFVLEA----MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
K G + +A MK+ S C+ T CLI C+ G L A + + ++ + GL
Sbjct: 536 KTGNLKDAKDLKMKMVSDGLQPDCI----TYTCLIHAHCERGLLSEARKLLNGMVSD-GL 590
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P VVTY I+IH C+ G A G M + G+EPN
Sbjct: 591 QPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPN 628
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 162/361 (44%), Gaps = 65/361 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---ALVALNLFEEM-- 75
P +VT+N++I GL ++ A F ++ P++IT+N++ A NL E +
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWL 406
Query: 76 ---VNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ G+ P V+T +IDG C+ G M++QG PDV T ++ +
Sbjct: 407 LGDLRRAGL--APTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGS 464
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNT-------LMDGFAWWS-------KGCRHDV 168
K + A + M+ + + P+ YNT L D + KG D
Sbjct: 465 HKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDT 524
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN++I+G CK N++DA L +M+S+G++ D TY L
Sbjct: 525 VTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNG 584
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE------TCNCLIDG 264
M + + P YT I + G ++SA G + +L + T N LI
Sbjct: 585 MVSDGLQPSVVTYTILIHTCCRRG------NLYSAYGWFRKMLDVGIEPNEITYNVLIHA 638
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
LC+ GR +A+ FH +++ GL P+ TY ++I G C+EG A L +M + G+ P
Sbjct: 639 LCRTGRTLLAYHHFHEMLER-GLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPP 697
Query: 325 N 325
+
Sbjct: 698 D 698
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 140/327 (42%), Gaps = 54/327 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LLG + + P ++T+N+LI G C G + EA RL +++ C P+V T+ L
Sbjct: 406 LLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSH 465
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVT-----CTNIIDGLCKDGF-----MMDQGMRP 110
+A F+EM+++ G+ +PD C +I G F MM +G+ P
Sbjct: 466 KVRNLPMAREFFDEMLSK-GL--QPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYP 522
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D VT NV+ D L K G +++A L M+ + P+ TY L+
Sbjct: 523 DTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLL 582
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
S G + V +Y ILI+ C+ N+ A R+ML GI + TYN L
Sbjct: 583 NGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVL------- 635
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I L + G L A F + T LIDG C+ G A
Sbjct: 636 ----------IHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIR 685
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCK 303
++ + QN G+ PD T+N + GF K
Sbjct: 686 LYFEMHQN-GIPPDYCTHNALFKGFDK 711
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 155/390 (39%), Gaps = 85/390 (21%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN--------- 70
P++ N +++ L R + +++++ +P ++T+NTL L
Sbjct: 205 APDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASM 264
Query: 71 LFEEMVNEFG-----------VIC----------------------KPDVVTCTNIIDGL 97
L +EM + G VI K T +I L
Sbjct: 265 LLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITAL 324
Query: 98 CKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
+ GF M ++G+ P +VT N + L K ++E A M + P+
Sbjct: 325 LERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDL 384
Query: 148 CTYNTLMDGF--------AWW------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
TYN++++G+ A W G V +YN LI+GYC+ +E+A L E
Sbjct: 385 ITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEE 444
Query: 194 MLSEGIRADATTYNTLF---MAINNVP---------------PDSHVYTTYIDGLYKNGF 235
M+ +G D TY L + N+P PD Y T I G
Sbjct: 445 MVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGD 504
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+A ++ + T N +IDGLCK G LK A D+ M M + GL PD +TY
Sbjct: 505 THKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDL-KMKMVSDGLQPDCITYT 563
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IH C+ G +A LL M GL+P+
Sbjct: 564 CLIHAHCERGLLSEARKLLNGMVSDGLQPS 593
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F L +++ P+ VT+N +I GLC G + +A L K+ P+ IT
Sbjct: 502 LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCIT 561
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ L A L MV++ G+ +P VVT T +I C+ G
Sbjct: 562 YTCLIHAHCERGLLSEARKLLNGMVSD-GL--QPSVVTYTILIHTCCRRGNLYSAYGWFR 618
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+D G+ P+ +T NV+ L + G+ A M++R + PN
Sbjct: 619 KMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNK-------------- 664
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
Y+Y +LI+G C++ N DA+ L EM GI D T+N LF + H
Sbjct: 665 -------YTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK----GH 713
Query: 222 VY 223
+Y
Sbjct: 714 MY 715
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 38/220 (17%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G+ PDV N + L + ++ + M+Q ++ P TYNTL+D F
Sbjct: 202 HGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSF-------- 253
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
K+ ++A L +EM ++G +N+V Y
Sbjct: 254 -------------LKEGRKDEASMLLKEMETQGGGC----------LLNDV-----TYNV 285
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I L + G + A K+ ++ K + T N LI L + G ++ + M M+N
Sbjct: 286 VISFLAREGHLENAAKLVDSMRLSKKASSF-TYNPLITALLERGFVQKV-EALQMEMENE 343
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P +VTYN +IHG K Q + A +M GL P+
Sbjct: 344 GIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPD 383
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 55/354 (15%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------- 65
+++ P ++N+++ LC E R+ E + + PNVIT+ T+
Sbjct: 220 VLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGEL 279
Query: 66 LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTL 115
+A + MV C P+VVT T ++ GL DG +M+ +G P V+
Sbjct: 280 RMACAILARMVITG---CTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSY 336
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS---- 161
N++ L G ++ A+ +L M Q PN TY+TL+DGF + W+
Sbjct: 337 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 396
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
GC+ +V Y +++ +CK A SL +ML E + T+NTL ++
Sbjct: 397 SGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGR 456
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+ Y I GL++ G +A+ + + + +H L++ T N ++
Sbjct: 457 ALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVS 516
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
GLC+ R+ +F M G+ P+ T++ +IH +CKEG+ + A +L M
Sbjct: 517 GLCQT-RMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAM 569
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 160/385 (41%), Gaps = 83/385 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE---- 74
PN+ T+N L++ LC R+ A ++ ++ C P+ +T+ T+ L L+ +E
Sbjct: 161 PNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEV 220
Query: 75 -----------------------MVNEFGVIC-------KPDVVTCTNIIDGLCKDG--- 101
M F V+ +P+V+T T I+D CK G
Sbjct: 221 LAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELR 280
Query: 102 -------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM 154
M+ G P+VVT + L DG++ +A + M+ P+T +YN L+
Sbjct: 281 MACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILI 340
Query: 155 DGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIR 200
G + GC +V +Y+ LI+G+ K ++ A+S+ +M G +
Sbjct: 341 RGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCK 400
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ Y + M + N PP++ + T I L V A+ V
Sbjct: 401 PNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGV 460
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHG 300
F + H CV T N LI GL + G D HM+ MQ+ G+ +VTYN ++ G
Sbjct: 461 FHEMRRHGCVPNGRTYNELIHGLFREGNCG---DALHMVTEMQSHGIELSLVTYNTVVSG 517
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
C+ ++A + M G++PN
Sbjct: 518 LCQTRMSREAMVFVGKMIVQGIQPN 542
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 61/346 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+L R++++ TPN+VTF +L++GL +GR+ +A +++ + P+ +++N L
Sbjct: 284 AILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGL 343
Query: 65 --------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQ 106
A LN E+ C P+V T + +IDG K G M
Sbjct: 344 CSVGDLKGASSILNSMEQHG------CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRS 397
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G +P+VV M D K +A L++ M+ + PNT T+NTL+
Sbjct: 398 GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRA 457
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
GC + +YN LI+G ++ N DA+ + EM S GI TYNT+
Sbjct: 458 LGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 517
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + + P++ ++ I K G V A + A+ C
Sbjct: 518 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 577
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
I L+ LC +L A + + M G+ P+ VT+N+++ G
Sbjct: 578 ILVYTILMAELCNQDKLVDAM-TYLLKMLYEGIYPNTVTWNVLVRG 622
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 134/328 (40%), Gaps = 49/328 (14%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEMV 76
+N LI L E + ++ + PNV T+N L A + +EM
Sbjct: 131 YNHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMA 190
Query: 77 NEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
+ C PD VT I+ LCK + + M P + N + L ++ +M+E
Sbjct: 191 RKG---CPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEV 247
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILING 177
++ M+ R + PN TY T++D F + GC +V ++ L+ G
Sbjct: 248 FSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRG 307
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
D V DA+ + R M++EG +YN L I GL G +
Sbjct: 308 LFDDGRVHDALDMWRWMVAEGWAPSTVSYNIL-----------------IRGLCSVGDLK 350
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A + +++ H C + T + LIDG K G L A I++ M G P+VV Y M
Sbjct: 351 GASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWND-MSRSGCKPNVVVYTNM 409
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK+ +A L+ M PN
Sbjct: 410 VDVFCKKLMFNQAKSLIDKMLLENCPPN 437
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 63/335 (18%)
Query: 34 CTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNI 93
CTEG ++ A F + P+ AL F V++ G + ++
Sbjct: 88 CTEGALVAAVGAFARAGA----PDR---------ALKTFYRAVHDLGCARPTEPRLYNHL 134
Query: 94 IDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
ID L ++ M G+ P+V T N++ L ++ ++ A +L+ M ++
Sbjct: 135 IDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGC 194
Query: 144 NPNTCTYNTLMDGFAWWSKGCRHD---------------VYSYNILINGYCKDRNVEDAV 188
P+ TY T++ S C+ D SYN ++ C++ +++
Sbjct: 195 PPDDVTYATIV------SVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVF 248
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
S+ +M+ G++ + TY T+ M I P+ +T + GL
Sbjct: 249 SVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 308
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ +G V +A+ ++ + + + N LI GLC +G LK A I + + Q+ G P+
Sbjct: 309 FDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQH-GCFPN 367
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V TY+ +I GF K G A + DM +G +PN
Sbjct: 368 VRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPN 402
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V + +++ C + +A L K+ + C PN +TFNTL AL +
Sbjct: 401 PNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGV 460
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM C P+ T +I GL ++G M G+ +VT N +
Sbjct: 461 FHEMRRHG---CVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSG 517
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSKG------CRHD 167
L + EA + MI + + PN T++ ++ + A W G C +
Sbjct: 518 LCQTRMSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCHRN 577
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+ Y IL+ C + DA++ +ML EGI + T+N L +
Sbjct: 578 ILVYTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVRGV 623
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 159/376 (42%), Gaps = 96/376 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEA------------------ 42
+ + F + IL + P+ +T N+LIKGLC G I A
Sbjct: 141 LAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVS 200
Query: 43 -----------------ARLFKKLNVFCCDPNVITFNTLALV---------ALNLFEEMV 76
ARL +KL P+V+ + T+ A +L+ EM+
Sbjct: 201 YGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMI 260
Query: 77 NEFGVICKPDVVTCTNIIDGLC-----KDGFMMDQGMR-----PDVVTLNVMTDNLSKDG 126
+ G+ P+V T +I G C K+ F + M+ PDV T N++ D L K+G
Sbjct: 261 VK-GI--SPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEG 317
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
K++EA L E M +++ PN TY +L+DG CK+ ++E
Sbjct: 318 KIDEAISLFEEMKHKNMFPNIVTYTSLIDGL---------------------CKNHHLER 356
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A++LC++M +GI+ PD + YT +D L K G + A + F +
Sbjct: 357 AIALCKKMKEQGIQ-----------------PDVYSYTILLDALCKGGRLENAKQFFQHL 399
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
L + T N +I+GLCK G D+ M+ G PD +T+ +I ++ +
Sbjct: 400 LVKGYHLNVRTYNVMINGLCKAGLFGDVMDL-KSKMEGKGCMPDAITFKTIICALFEKDE 458
Query: 307 HQKANGLLLDMEETGL 322
+ KA L +M GL
Sbjct: 459 NDKAEKFLREMIARGL 474
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 149/339 (43%), Gaps = 54/339 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
TPN+ T N LI C I A +F + P+ IT NTL +
Sbjct: 125 TPNLCTLNILINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALY 184
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F + V G + D V+ +I+GLCK G + ++PDVV +
Sbjct: 185 FHDKVVAQGF--QLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHC 242
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
L K+ ++ +A L MI + ++PN TYNTL+ GF K D
Sbjct: 243 LCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPD 302
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
VY++NILI+ K+ +++A+SL EM + N+ P+ YT+ I
Sbjct: 303 VYTFNILIDALGKEGKIDEAISLFEEMKHK-----------------NMFPNIVTYTSLI 345
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPG 286
DGL KN + A+ + + + + L+D LCK GRL+ A F H+L++ G
Sbjct: 346 DGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVK--G 403
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V TYN+MI+G CK G L ME G P+
Sbjct: 404 YHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPD 442
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 34/234 (14%)
Query: 108 MRPDVVTLNV--MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---- 161
MRP T + + +L K+ L + V PN CT N L++ F +
Sbjct: 87 MRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITF 146
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+G D + N LI G C ++ A+ +++++G + D +Y TL
Sbjct: 147 AFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTL-- 204
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I+GL K G ++ + H + +I LCK R+
Sbjct: 205 ---------------INGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRV 249
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A D++ ++ G++P+V TYN +I+GFC G ++A LL +M+ + P+
Sbjct: 250 GDACDLYSEMIVK-GISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPD 302
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 154/358 (43%), Gaps = 56/358 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LLG + +PN+V + +LI G C G I A F K+ N TF
Sbjct: 176 GNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTF 235
Query: 62 NTL---------ALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
L +LFE+M +N G+ P++ T +++ C +G
Sbjct: 236 TVLINGLFKKGLKKDGFDLFEKMKIN--GLF--PNLYTYNCLMNEYCGEGKICRAFDLFD 291
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M ++G+ +VVT N + + ++ ++ EA L++ M + V+PN TYNTL+ GF
Sbjct: 292 EMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVG 351
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G + +YNILI GY K N + L REM GI
Sbjct: 352 NLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGI-------- 403
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
P T ID + + +A +++S++ V + LI GLC
Sbjct: 404 ---------SPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCM 454
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +K + +F M + P V YN MIHG+CKE +A LL +ME GL PN
Sbjct: 455 KGNMKESSKLFRS-MGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPN 511
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 127/306 (41%), Gaps = 53/306 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ ++ PN+ T+N L+ C EG+I A LF ++ + NV+T+
Sbjct: 246 GLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTY 305
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC------KDGFMMDQ 106
NTL A L ++M P+++T +I G C K ++DQ
Sbjct: 306 NTLIGGMCREERVWEAEKLVDQMKK---AAVSPNLITYNTLIGGFCDVGNLDKASSLLDQ 362
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
G+ P +VT N++ + SK G + L M R ++P+ T L+D + +
Sbjct: 363 LKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQE 422
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G DVY Y +LI+G C N++++ L R
Sbjct: 423 MEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRS--------------- 467
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M +V P +Y T I G K A+++ + V + + + +I LCK
Sbjct: 468 --MGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKD 525
Query: 269 GRLKIA 274
G+ + A
Sbjct: 526 GKWEEA 531
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 38/239 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ ++ + +PN++T+N+LI G C G + +A+ L +L P+++T+N L +
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNIL----I 379
Query: 70 NLFEEMVNEFGVI----------CKPDVVTCTNIIDGLCK-----DGF-----MMDQGMR 109
+ + N GV P VTCT +ID + F M G+
Sbjct: 380 EGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLV 439
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------ 157
PDV V+ L G M+E++ L M + V P+ YNT++ G+
Sbjct: 440 PDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRL 499
Query: 158 --AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN 214
+KG +V SY+ +I CKD E+A L +M+ ++ A+ N + A N
Sbjct: 500 LREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISKAKN 558
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ DVYS+ I+I G C++ N++ + L G+ D + P+ +YT
Sbjct: 159 KFDVYSFGIMIKGCCENGNLDKSFQLL------GLLQDM-----------GLSPNVVIYT 201
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T IDG KNG + A F +G V T LI+GL K G K +D+F + N
Sbjct: 202 TLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKIN 261
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P++ TYN +++ +C EG+ +A L +M E G+E N
Sbjct: 262 -GLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEAN 301
>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
Length = 447
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 160/355 (45%), Gaps = 53/355 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S + RI C PN+ T++ L+ LC G+ EA L ++ C PNV+T+
Sbjct: 79 GKVSQALLHFRRIGEDC-APNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTY 137
Query: 62 NTL--ALVALNLFEEMV------NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---- 109
N L L +E++ ++ G C+ DV+T T I+D CK+ +D+ R
Sbjct: 138 NALIDGFRKLERLDEVLMLLKEMSQRG--CRADVITYTMILDIFCKNN-SIDEAYRLLNA 194
Query: 110 ---PDVVTLNVMTDNLS--KDGKMEEANCLLEVMIQRDVNPNTCTYNTLM---------- 154
+VVT N + LS + + EA LLE MIQ PN Y T++
Sbjct: 195 LEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLD 254
Query: 155 DGF----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ + + +S+GC+ D SY IL+ + D++ L ML G D T N +
Sbjct: 255 EAYQVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVV- 313
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I K G + EA ++F ++ + + T N LI CK +
Sbjct: 314 ----------------IHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQ 357
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + H ++Q P+V+TYN +I FC+E + ++A G+ M ++G P+
Sbjct: 358 PDTAVKLLHQMIQ-ADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPD 411
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 159/401 (39%), Gaps = 112/401 (27%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G+ L+ + N V++ L++G C G +A
Sbjct: 10 RHRHGYEFYRHRLLGSYAVNEVSYGILMQGFCKAGEFQQA-------------------- 49
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---------PDVV 113
L L +EM + GV +P+VV T II GLC G + + P+V
Sbjct: 50 ------LELLDEMKSN-GV--RPNVVIHTTIIRGLCTAGKVSQALLHFRRIGEDCAPNVY 100
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T +++ D L K G+ EA L+ M+++ +PN TYN L+DGF
Sbjct: 101 TYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEM 160
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-- 217
+GCR DV +Y ++++ +CK+ ++++A L L+ + + TYN+LF A++
Sbjct: 161 SQRGCRADVITYTMILDIFCKNNSIDEAYRL----LNALEKRNVVTYNSLFTALSTAEGD 216
Query: 218 ------------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC-------- 251
P+ Y T + L KN + EA +V ++ + C
Sbjct: 217 RTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYK 276
Query: 252 ---------------------------VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+L +T N +I CK G L A +F + Q
Sbjct: 277 ILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQR 336
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G P VTYN +I FCK Q A LL M + +PN
Sbjct: 337 -GSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPN 376
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCT-EG-RILEAARLFKKLNVFCCDPNVITFNTLALVALN 70
R+L + N+VT+NSL L T EG R EA L +K+ PN + + T+ L+
Sbjct: 190 RLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCK 249
Query: 71 ------LFEEMVNEFGVICKPDVVTCTNII----------DGLCKDGFMMDQGMRPDVVT 114
++ +++ + CK D V+ ++ D L G M+ G D T
Sbjct: 250 NSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKT 309
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
+NV+ K G + EA+ L + M QR P+ TYNTL+ F +
Sbjct: 310 MNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-PD 219
+ +V +YN +I +C+++ E+A + + M+ G D +Y TL ++ N+ D
Sbjct: 370 QADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKISKNDAAIYD 429
Query: 220 SHVYTT 225
V+ T
Sbjct: 430 QKVHDT 435
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
LL +++ + F PN++T+NS+IK C E R EA +F+ + C P+ +++ TL +
Sbjct: 364 LLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKI 420
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 63/332 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V+++NTL
Sbjct: 127 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M+ G++PDV T +V+ + L K+ KM++AN
Sbjct: 178 --MNGY--------IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+DG +CK+ V+ A+ + ++
Sbjct: 228 LFDEMLVKGLVPNGVTFTTLIDG---------------------HCKNGRVDLAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A + + L LI GLC+ GR + D ML M + GL PD+ T
Sbjct: 327 LDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPDIGT 383
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++I+ FCK+G K + LL +M+ G P+
Sbjct: 384 YTMIINEFCKKGDVWKGSKLLKEMQRNGHAPS 415
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 42/241 (17%)
Query: 89 TCTNIIDGLCK-DGFMMDQGMRPDVVT---------LNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K F + G D++ N++ KDG + A + + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ +YNTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML +G+ P+ +TT IDG KNG V AM+++
Sbjct: 223 DDANELFDEMLVKGL-----------------VPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + + T N LI GLCK G LK A D+ M GL PD TY +I G CKE
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDE-MSMKGLKPDKFTYTTLIDGCCKE 324
Query: 305 G 305
G
Sbjct: 325 G 325
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 36/242 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L +L S P++ T++ LI GLC E ++ +A LF ++ V PN +T
Sbjct: 184 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 243
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
F TL +A+ ++++M+++ PD++T +I GLCK G +
Sbjct: 244 FTTLIDGHCKNGRVDLAMEIYKQMLSQ---SLSPDLITYNTLIYGLCKKGDLKQAHDLID 300
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
+G++PD T + D K+G ++ A + MIQ ++ + Y L+ G
Sbjct: 301 EMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 360
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G + D+ +Y ++IN +CK +V L +EM G TYN
Sbjct: 361 RSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYN 420
Query: 208 TL 209
L
Sbjct: 421 VL 422
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + +A SL + ++S + A+ + + D +V+
Sbjct: 10 RHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ ++ HK + +TC +++ L K+ K+ W + +++
Sbjct: 70 SGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCK+G + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 157/358 (43%), Gaps = 73/358 (20%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+PN+ TFN L+ LC G+ A L +K++ P +T+NTL LN +
Sbjct: 176 SPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTL----LNWY------- 224
Query: 80 GVICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
CK + +ID M +G+ DV T NV+ D+L + + + +L M
Sbjct: 225 ---CKKGRYKAASELIDA------MASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRM 275
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSK-GCRHDVY-------------SYNILINGYCKDRNV 184
+ V PN TYNTL++G K G V+ +YN LI G+C + N+
Sbjct: 276 RKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNI 335
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
E+A+ LC M+S G+R + TY L M ++ V YTT
Sbjct: 336 EEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTM 395
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL-------------------CK 267
IDGL KNG + EA+++ + I T + L++G CK
Sbjct: 396 IDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCK 455
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+G LK A + + +M G D T ++++ FC+ G+ ++A + M GL P+
Sbjct: 456 MGNLKEALNAY-AVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPS 512
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 158/362 (43%), Gaps = 74/362 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S LL ++M+ F P+ T+ SLI GLC +G+++ A
Sbjct: 597 GNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPAL------------------ 638
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPD 111
L E G++ P+ T+++DGL K+G M+++G++PD
Sbjct: 639 ---------LLSGRAIEKGLL-SPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPD 688
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------AWWSK--- 162
+ NV+ D S+ GKM + N +L M R + N TYN L+ G+ A SK
Sbjct: 689 AIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYN 748
Query: 163 -----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------- 210
G D +++ LI GYCK +++ AV R++ EG + D T N L
Sbjct: 749 EMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERN 808
Query: 211 ---MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
MA + V P+ Y + +G + EA + A+ + T +
Sbjct: 809 EIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFT 868
Query: 260 CLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN---GLLLD 316
LI G+C++G +K A ++ M+ G++ V + +I G + + +A G++L+
Sbjct: 869 TLIRGMCRMGNVKGAMEL-QDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLE 927
Query: 317 ME 318
M+
Sbjct: 928 MQ 929
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 163/367 (44%), Gaps = 55/367 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R++ G+++L R+ + PN +T+N+LI GL EG+I A ++F+++++ PN +T+
Sbjct: 263 SRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTY 322
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL AL L + MV+ G+ +P+ VT +++G+ K
Sbjct: 323 NTLIFGHCSNGNIEEALRLCDVMVSH-GL--RPNEVTYGALLNGISKHAQFGLVSSVLER 379
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+R ++ M D L K+G +EEA LL+ M++ V+P+ T++ L++GF
Sbjct: 380 MRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGF--LKT 437
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
G + ++ LI YCK N+++A++ M G +D T + L
Sbjct: 438 GLVPNRVLHSTLIYNYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEA 497
Query: 210 -----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF---SAIGNHKCVLTIETCNCL 261
M+ + P S + ID +G L+A VF +++G+ T E
Sbjct: 498 EYFVDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKG 557
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT---YNIMIHGFCKEGQHQKANGLLLDME 318
+ I KI M P P + YN M+ + G A LL +M
Sbjct: 558 LLIGGHINEAKI-------FMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMV 610
Query: 319 ETGLEPN 325
P+
Sbjct: 611 MNNFVPD 617
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 38/234 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L +I + F + T N L+ LC I A L K+LN+ PNV T+N+L V
Sbjct: 781 FLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFV 840
Query: 68 ALNLFEE--------MVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ----GMR 109
F+E + N + CK T +I G+C+ G + D+ G+
Sbjct: 841 RTCSFDEARCILHALLENGYAPTCK----QFTTLIRGMCRMGNVKGAMELQDEMKILGVS 896
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--- 166
V ++ + L++ K +EA +L +M++ + P T+ TLM + +
Sbjct: 897 SQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALEL 956
Query: 167 -----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
DV +YN+LI+G C D +++ A L EM I + + Y L
Sbjct: 957 RSVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVL 1010
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+L +L + + P F +LI+G+C G + A L ++ + + + + L
Sbjct: 851 ILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLA 910
Query: 68 ALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG---------FMMDQ-GMRPDVV 113
+E G++ + P V T T ++ CK+G +M+Q ++ DV
Sbjct: 911 RSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVA 970
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
NV+ L DG ++ A L E M QRD+ PNT Y L+D F
Sbjct: 971 AYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSF 1014
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 206 YNTLFMAINNVPP----DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
+N +F A+ P + V+ I + V +A++ F +G ++ TCN +
Sbjct: 91 FNNVFGALMETYPFCNSNPAVFDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMV 150
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ L K + + W F ++ N ++P+V T+NI+++ C+ G+ + A LL M+ETG
Sbjct: 151 LGSLVKDREVDLFWSFFKEMIANR-VSPNVATFNILLNALCERGKFKSAGVLLRKMDETG 209
Query: 322 LEP 324
P
Sbjct: 210 HFP 212
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 172/374 (45%), Gaps = 54/374 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G G + ++ ++VT+N+L+ G C G+I E+ L+ + C NV++
Sbjct: 303 VGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCH-NVVS 361
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFM----------M 104
+N L EE ++ + ++ + D T +I GLCK+G +
Sbjct: 362 YNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAK 421
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSK 162
D G + D + + D LSK G+++EA ++ M + +++P+ C N L++GF SK
Sbjct: 422 DGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC--NPLINGFVRASK 479
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC V SYN LING CK DA S +EML + + D TY+
Sbjct: 480 LEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSL 539
Query: 209 LF----------MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L MA+N + PD ++ + GL G + +A+ ++S +
Sbjct: 540 LMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSN 599
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C+ + T N L+DGL K ++A I+ + +N G PD+++YNI + G C G+
Sbjct: 600 CLPNLVTHNTLMDGLYKARECEMASVIWACMFKN-GFQPDIISYNITLKGLCSCGRISDG 658
Query: 311 NGLLLDMEETGLEP 324
L D + G+ P
Sbjct: 659 IALFDDALKNGILP 672
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 170/391 (43%), Gaps = 90/391 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ T+N LIK + + +EA L + P+V ++ T+ + AL +
Sbjct: 147 PNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEV 206
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMRPDVVTLNVMTD 120
F+EM E G++ PDV+ +IDG K G + + P+VVT NVM +
Sbjct: 207 FDEMF-ERGLV--PDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMIN 263
Query: 121 NLSKDGKMEEA----------NCLLEV-------------------------MIQRDVNP 145
L K G+ +E+ C +++ M++R V
Sbjct: 264 GLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVV 323
Query: 146 NTCTYNTLMDGFA-----------WWSKGCR--HDVYSYNILINGYCKDRNVEDAVSLCR 192
+ TYN L++GF W G H+V SYNI I G ++R VE+A+S+
Sbjct: 324 DVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWE 383
Query: 193 EMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNG 234
+ G AD+TTY L + D+ Y++ +DGL K G
Sbjct: 384 LLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQG 443
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
V EA+ + + + C L+ CN LI+G + +L+ A F M+ G +P VV+Y
Sbjct: 444 RVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFRE-METKGCSPTVVSY 502
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +I+G CK + A + +M E +P+
Sbjct: 503 NTLINGLCKAERFSDAYSFVKEMLEKDWKPD 533
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 34/224 (15%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVI---- 82
N LI G ++ EA F+++ C P V+++NTL + L E + + +
Sbjct: 468 NPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTL-INGLCKAERFSDAYSFVKEML 526
Query: 83 ---CKPDVVTCTNIIDGLCKDGFMMD-----------QGMRPDVVTLNVMTDNLSKDGKM 128
KPD++T + ++DGLC+ G +D +G+ PDV N++ L GK+
Sbjct: 527 EKDWKPDMITYSLLMDGLCQ-GKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKI 585
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW---WSKGCRHDVYSYNIL 174
E+A L M Q + PN T+NTLMDG W + G + D+ SYNI
Sbjct: 586 EDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNIT 645
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
+ G C + D ++L + L GI + T+ L A+ + P
Sbjct: 646 LKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGP 689
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 145/335 (43%), Gaps = 56/335 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLF-KKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P + ++N+L+ E +LE A F PN+ T+N L +++
Sbjct: 112 PGIRSYNALLNAF-IEANLLEKAESFLAYFETVGILPNLQTYNILIKISVK--------- 161
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
K V ++D +M + ++PDV + + + + K G + A + + M
Sbjct: 162 ----KRQFVEAKGLLD------WMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMF 211
Query: 140 QRDVNPNTCTYNTLMDGF----------AWWSK----GCRH-DVYSYNILINGYCKDRNV 184
+R + P+ YN ++DGF W + C + +V +YN++ING CK
Sbjct: 212 ERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRF 271
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMA---INNVPPDSHVYT------------TY--- 226
++++ + M D TY++L + NV VY TY
Sbjct: 272 DESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNAL 331
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
++G + G + E+ +++ +G C + + N I GL + +++ A ++ +L + G
Sbjct: 332 LNGFCRAGKIKESFELWVMMGKENC-HNVVSYNIFIRGLFENRKVEEAISVWELLRRR-G 389
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
D TY ++IHG CK G KA +L + ++ G
Sbjct: 390 SGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGG 424
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------- 209
GC+ + SYN L+N + + +E A S + GI + TYN L
Sbjct: 109 GCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEA 168
Query: 210 -----FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
+M ++ PD + Y T I+G+ K+G ++ A++VF + V + N +IDG
Sbjct: 169 KGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDG 228
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
K G +I+ L++ + P+VVTYN+MI+G CK G+ ++
Sbjct: 229 FFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDES 274
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 66/313 (21%)
Query: 34 CTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNI 93
CTE +L + + K + PN AL+ F++M FG CKP + + +
Sbjct: 76 CTEDVVLTVLKAYAKSKM----PNE---------ALDCFQKMEEIFG--CKPGIRSYNAL 120
Query: 94 IDGLCKDGFMMDQ----------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
++ + + G+ P++ T N++ K + EA LL+ M
Sbjct: 121 LNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWM----- 175
Query: 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
WSK + DVYSY +ING K ++ A+ + EM G+ D
Sbjct: 176 ----------------WSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDV 219
Query: 204 TTYNTL-------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
YN + + + V P+ Y I+GL K G E+++++
Sbjct: 220 MCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWE 279
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ ++C + + T + LI GLC +G + A +++ +++ + DVVTYN +++GFC+
Sbjct: 280 RMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKR-SVVVDVVTYNALLNGFCRA 338
Query: 305 GQHQKANGLLLDM 317
G+ +++ L + M
Sbjct: 339 GKIKESFELWVMM 351
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 42/105 (40%)
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
H++ + L V+ ++ I KC T + ++ K A D F
Sbjct: 44 HIFLLILRRLSDPKLVVHVTRIVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQK 103
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + G P + +YN +++ F + +KA L E G+ PN
Sbjct: 104 MEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPN 148
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 168/353 (47%), Gaps = 50/353 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+P++V +N+++ G GRI E L+K + C V+++N L L +E ++
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAIS 380
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFMMD--------QGMRPDVVTL--NVMTDNLS 123
+ ++ C D +T ++ GLCK+G++ + R D+ T + M + L
Sbjct: 381 IWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 440
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
++G+++E +L+ M + PN N +++GF SK GC V
Sbjct: 441 REGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV 500
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAIN----- 214
+YN LING K +A +L +EML +G + + TY+ L MA+N
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQA 560
Query: 215 ---NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD ++ I GL +G V +A++++S + KCV + T N L++G K+
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDF 620
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A I+ ++Q G PD+++YNI + G C + A G L D + G+ P
Sbjct: 621 ERASKIWDHILQY-GPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP 672
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 53/352 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN-VFCCDPNVITFNTL--ALVALNLFE 73
C P V ++IK +A +F++++ +F C P + ++N+L AL+ N ++
Sbjct: 73 KCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWD 131
Query: 74 EMVNEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
E + F P++ T +I C+ +M +QG PDV + +
Sbjct: 132 EAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLI 191
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK-----GC 164
++L+K+G M +A L + M +R V P+ YN L+DGF W +
Sbjct: 192 NSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSV 251
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
++ SYN++ING CK +++ + M D TY+TL
Sbjct: 252 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 311
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
MA N V PD VY T ++G + G + E ++++ + C T+ + N LI GL
Sbjct: 312 VYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLF 370
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ ++ A I+ +L + D +TY +++HG CK G KA +L + E
Sbjct: 371 ENAKVDEAISIWELLPEK-DCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 421
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 32/224 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN N++I G ++ +A R F + C P V+T+NTL + L+ E +
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTL-INGLSKAERFSEAYA 520
Query: 81 VI-------CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLS 123
++ KP+++T + +++GLC+ + +++G +PDV N++ L
Sbjct: 521 LVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVY 169
GK+E+A L M QR PN T+NTLM+GF W G + D+
Sbjct: 581 SSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDII 640
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
SYNI + G C + DAV + + G+ A T+N L A+
Sbjct: 641 SYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAV 684
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALN 70
+ L F P++ N +I GLC+ G++ +A +L+ ++ C PN++T NTL +
Sbjct: 559 QALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVR 618
Query: 71 LFEEMVNEFGVIC----KPDVVTCTNIIDGLCK-------DGFM---MDQGMRPDVVTLN 116
FE + I +PD+++ + GLC GF+ +D+G+ P +T N
Sbjct: 619 DFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWN 678
Query: 117 VMTDNLSKDGKM 128
++ + +G +
Sbjct: 679 ILVRAVLDNGAL 690
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
V T I KN +A+ +F + C I + N L++ L + + A + F +
Sbjct: 80 VALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEA-ESFFL 138
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL+P++ TYNI+I C++ Q KA LL M E G P+
Sbjct: 139 YFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPD 183
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 208 TLFMAINNVPPDSH---VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
++F ++ P SH V+ + L+ V ++ I KC + +I
Sbjct: 28 SIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTVIKA 87
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
K A DIF + + G P + +YN +++ + + +A L E GL P
Sbjct: 88 YAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSP 147
Query: 325 N 325
N
Sbjct: 148 N 148
>gi|449504220|ref|XP_004162287.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 148/334 (44%), Gaps = 55/334 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ N T+NSL++GLC G + ++ +L +L PN T++ L A A
Sbjct: 163 YPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
L +E++ + G KP++V+ ++ GLCK+G D +G P+VV+ N++
Sbjct: 223 KLLDEIIAKGG---KPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILL 279
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CR 165
+L +G+ EEAN LL M + +P+T TYN L+ + +
Sbjct: 280 RSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFK 339
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
SYN +I CKDR V+ V +M+ + TYN
Sbjct: 340 PTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA----------------- 382
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I L + G V EA + ++GN + T E +I LC+ G A+ + + M
Sbjct: 383 -IATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYE-MTKY 440
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G TPD TY+ +I G C EG +A + MEE
Sbjct: 441 GFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE 474
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 142/338 (42%), Gaps = 48/338 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL I+ PN+V++N L+ GLC EGR +A +LF++L PNV+++N L +L
Sbjct: 224 LLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLC 283
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+EE + G P VT +I L G M+ +P
Sbjct: 284 NEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTAS 343
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------MDGFAWWSKGC 164
+ N + L KD K++ L+ M+ R NPN TYN + + F+
Sbjct: 344 SYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLG 403
Query: 165 RHDVYS----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+S Y I+I C+ N A L EM G PDS
Sbjct: 404 NKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGF-----------------TPDS 446
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y++ I GL G + EA+++FS + L E N LI G CK R +A D+F
Sbjct: 447 FTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNSLILGCCKSRRTDLALDVFE- 504
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+M G + TY I++ G E + A +L +++
Sbjct: 505 IMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 40/242 (16%)
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
FM+++G +PDV + +L K KM +A ++E+MI + P
Sbjct: 87 FMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIP---------------- 130
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
D SY L++ C+ NV A+ L +M G + TYN+L +
Sbjct: 131 -----DAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQ 185
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+++ Y+ ++ YK EA K+ I + + N L+
Sbjct: 186 SLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLT 245
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK GR + A +F L + G +P+VV+YNI++ C EG+ ++AN LL +M+
Sbjct: 246 GLCKEGRTEDAMQLFREL-PSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERS 304
Query: 324 PN 325
P+
Sbjct: 305 PS 306
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%)
Query: 84 KPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KPDV T ++ LCK M+ G+ PD + + +L + G + A
Sbjct: 94 KPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQ 153
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
L++ M + NT TYN+L+ G KG + Y+Y+ L+
Sbjct: 154 LVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAY 213
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+R ++A L E++++G + + +YN L + GL K G +A
Sbjct: 214 KERGADEASKLLDEIIAKGGKPNLVSYNVL-----------------LTGLCKEGRTEDA 256
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
M++F + + + + N L+ LC GR + A ++ M +P VTYNI+I
Sbjct: 257 MQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEA-NVLLAEMDGDERSPSTVTYNILIG 315
Query: 300 GFCKEGQHQKANGLLLDMEETGLEP 324
G+ + A +L +M +P
Sbjct: 316 SLTLHGRTEHALEVLEEMIRARFKP 340
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 47/285 (16%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A+ + E M+ G+I PD + T ++ LC+ G M + G + T N
Sbjct: 116 AIKVMEMMIGS-GII--PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNS 172
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ L G + ++ LL+ +IQ+ + PN TY+ L++ +KG
Sbjct: 173 LVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKG 232
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
+ ++ SYN+L+ G CK+ EDA+ L RE+ S+G + +YN L ++
Sbjct: 233 GKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEAN 292
Query: 214 --------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ P + Y I L +G A++V + + T + N +I L
Sbjct: 293 VLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARL 352
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
CK ++ + +M P+ TYN I C+EG Q+A
Sbjct: 353 CKDRKVDLVVKCLDQMMYR-HCNPNEGTYN-AIATLCEEGMVQEA 395
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S+ +R + ++ FM PD T + L K + +A+KV + +
Sbjct: 73 SKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDA 132
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ L+ LC+ G + A + M+ G + TYN ++ G C G ++ LL
Sbjct: 133 ASYTFLVSSLCRKGNVGYAMQLVDK-MEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLD 191
Query: 316 DMEETGLEPN 325
+ + GL PN
Sbjct: 192 RLIQKGLVPN 201
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 146/315 (46%), Gaps = 52/315 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---LVALNLFEEMVN 77
P++VTFN+LI GLC GR+ EA ++ ++ N++T+NTL A E ++
Sbjct: 87 PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146
Query: 78 EFGVICKPDVVTCTNIIDGLCKD-------GFMMDQGMR----PDVVTLNVMTDNLSKDG 126
G+ PD T II G CK GF+ + R PD T +++ + L K
Sbjct: 147 MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSS 206
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ +A+ LL+ MI R K C V ++N L++GYCK ++++
Sbjct: 207 NLRKADELLQEMIGR--------------------KDCCASVVAFNTLVDGYCKAQDLDR 246
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A L ML G D TY+T+ IDGL + G V + + +
Sbjct: 247 ARELLSSMLEHGCAPDVVTYSTI-----------------IDGLCRCGDVDKGFALLEKM 289
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ C + T L+ GLCK G++ A + ++++ G TP+ VTY+++ G CK +
Sbjct: 290 VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLED-GCTPNAVTYSLVFDGLCKIDK 348
Query: 307 HQKANGLLLDMEETG 321
AN LL + + G
Sbjct: 349 LDMANDLLTSIRDKG 363
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 124/281 (44%), Gaps = 41/281 (14%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
A++L EM + G+ P + + LCK G M D +PDVVT N
Sbjct: 36 AAMDLLREMEQQPGMAPTPSMYN--FFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFN 93
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH---------- 166
+ L K G+++EA +L+ M + N TYNTL++G + +
Sbjct: 94 TLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT 153
Query: 167 -DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D +YN +I+G+CK ++ A EM PD+ Y+
Sbjct: 154 PDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRA----------------GCSPDTFTYSI 197
Query: 226 YIDGLYKNGFVLEAMKVFSA-IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I+GL K+ + +A ++ IG C ++ N L+DG CK L A ++ ++++
Sbjct: 198 LINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEH 257
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDVVTY+ +I G C+ G K LL M G +P+
Sbjct: 258 -GCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPD 297
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 39/243 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR +L + S F N+VT+N+LI GL + GR EA + + + P+ T+
Sbjct: 103 GRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTY 159
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------DGFMMD 105
N + A EEM G C PD T + +I+GLCK D + +
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAG--CSPDTFTYSILINGLCKSSNLRKADELLQE 217
Query: 106 QGMRPD----VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
R D VV N + D K ++ A LL M++ P+ TY+T++DG
Sbjct: 218 MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCG 277
Query: 157 -----FAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
FA S+GC+ DV +Y +L+ G CK + +A L + ML +G +A TY+
Sbjct: 278 DVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYS 337
Query: 208 TLF 210
+F
Sbjct: 338 LVF 340
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 23/163 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLA-----LVALNLF 72
+P+ T++ LI GLC + +A L +++ CC +V+ FNTL L+
Sbjct: 189 SPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC-ASVVAFNTLVDGYCKAQDLDRA 247
Query: 73 EEMVN---EFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
E+++ E G C PDVVT + IIDGLC+ GF M+ +G +PDVVT V+
Sbjct: 248 RELLSSMLEHG--CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLV 305
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
L K GKM EA L++ M++ PN TY+ + DG K
Sbjct: 306 TGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDK 348
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 36/241 (14%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTLA---------LVAL 69
TP+ T+N++I G C G I A +++ C P+ T++ L A
Sbjct: 153 TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKAD 212
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMT 119
L +EM+ C VV ++DG CK M++ G PDVVT + +
Sbjct: 213 ELLQEMIGRKD--CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTII 270
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
D L + G +++ LLE M+ R P+ TY L+ G K GC
Sbjct: 271 DGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCT 330
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+ +Y+++ +G CK ++ A L + +G D + L +++ D +
Sbjct: 331 PNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKKRLLDRAAFQK 390
Query: 226 Y 226
+
Sbjct: 391 W 391
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 24/179 (13%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTLFMAI---NNVP----- 217
D Y+Y +L+ +C ++ A+ L REM + G+ + YN A+ VP
Sbjct: 17 DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD + T I GL K G + EA +V + + T N LI+GL
Sbjct: 77 VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE-TGLEPN 325
GR A ++MQ TPD TYN +IHGFCK G+ +A G L +M++ G P+
Sbjct: 137 AGRSGEAV----LVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD 191
>gi|15223266|ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08610
gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9 [Arabidopsis thaliana]
gi|332190196|gb|AEE28317.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 54/345 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+L ++MS P+ +T+N +I LC +G I A L + +++ P+VIT+NT+
Sbjct: 161 ILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMF 220
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
A A+ +++ + C P ++T T +++ +C+ M +G P
Sbjct: 221 DYGNAEQAIRFWKDQLQNG---CPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYP 277
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR-- 165
D+VT N + + + G +EE +++ ++ + NT TYNTL+ +W +
Sbjct: 278 DIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEIL 337
Query: 166 ---------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
V +YNILING CK R + A+ +ML + D TYNT+ A++
Sbjct: 338 NIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMS-- 395
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
K G V +A+++ + N C + T N +IDGL K G +K A +
Sbjct: 396 ---------------KEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALE 440
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
++H ++ + G+ PD +T +I+GFC+ ++A +L + G
Sbjct: 441 LYHQML-DAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRG 484
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 149/352 (42%), Gaps = 55/352 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFEEM 75
T N ++ LC+ G++ +A +L + + P+ + + L A+ + M
Sbjct: 106 TNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVM 165
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
V GV PD +T II LCK G M G PDV+T N + +
Sbjct: 166 VMSGGV---PDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
G E+A + +Q P TY L++ + +GC D+ +Y
Sbjct: 223 GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTY 282
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N L+N C+ N+E+ S+ + +LS G+ + TYNTL ++
Sbjct: 283 NSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQ 342
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P Y I+GL K + A+ F + KC+ I T N ++ + K G +
Sbjct: 343 TSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDD 402
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A ++ L++N P ++TYN +I G K+G +KA L M + G+ P+
Sbjct: 403 AIELLG-LLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPD 453
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 37/223 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+L + + + P ++T+N LI GLC + A F ++ C P+++T+NT+ A+
Sbjct: 336 ILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMS 395
Query: 68 ALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVV 113
+ ++ + G++ C P ++T ++IDGL K G M +D G+ PD +
Sbjct: 396 KEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDI 455
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
T + + +EEA +L+ R G R +Y +
Sbjct: 456 TRRSLIYGFCRANLVEEAGQVLKETSNR-------------------GNGIRGS--TYRL 494
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+I G CK + +E A+ + ML+ G + D T Y + + +
Sbjct: 495 VIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEM 537
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 109/262 (41%), Gaps = 39/262 (14%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
GL DG + + D T N + NL +GK+ +A L+EVM + + P+ + + L+
Sbjct: 92 GLSSDGPITEN----DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVR 147
Query: 156 GFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G A + G D +YN++I CK ++ A+ L +M G
Sbjct: 148 GLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPP 207
Query: 202 DATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D TYNT+ + N PP YT ++ + + A++V
Sbjct: 208 DVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVL 267
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRL-KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ C I T N L++ C+ G L ++A I H+L GL + VTYN ++H C
Sbjct: 268 EDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSH--GLELNTVTYNTLLHSLC 325
Query: 303 KEGQHQKANGLLLDMEETGLEP 324
+ +L M +T P
Sbjct: 326 SHEYWDEVEEILNIMYQTSYCP 347
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 128 MEEANCLLEV-------MIQRDVNPNTCTYNTLMDGFAWWSK--GCRHDVY-SYNILING 177
M +N LLEV + Q+ NP +C + +D W + G + DV+ + L++
Sbjct: 1 MASSNLLLEVQFLHIPSLSQKQANPLSCRKFSSLD----WKQEIGLKKDVFFRCHGLLSS 56
Query: 178 YCKDRNVEDAVSLCREMLSEGI----RADATTYNTLFMAINN--VPPDSHVYTTYIDGLY 231
C D NV D E G+ RA ++ + D + L
Sbjct: 57 VCID-NVNDHAERSSEFHHYGVGTNLRARVKPMKQFGLSSDGPITENDEETNNEILHNLC 115
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
NG + +A K+ + H V +C+ L+ GL +I +L A I +++ + G+ PD
Sbjct: 116 SNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCILRVMVMSGGV-PDT 174
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN++I CK+G + A LL DM +G P+
Sbjct: 175 ITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPD 208
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 39/172 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G LLG + +C P ++T+NS+I GL +G L KK
Sbjct: 398 GMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKG-------LMKK------------- 437
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM-------RPDVV- 113
AL L+ +M++ G+ PD +T ++I G C+ + + G R + +
Sbjct: 438 ------ALELYHQMLDA-GIF--PDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIR 488
Query: 114 --TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
T ++ L K ++E A ++E+M+ P+ Y ++ G G
Sbjct: 489 GSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVKGVEEMGMG 540
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 34/247 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F++ +++ TPN+VT+ +L GLC +G + A L ++ + N+ T
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497
Query: 61 FNTLA---LVALNLFEEM-----VNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N+L A NL + M ++E G+ KPDV T T II LC+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGL--KPDVYTYTTIIGALCQSKELDRAHSLLQE 555
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G++P +VT NV+ + G++E LLE M++++++PNT TYN+LM +
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+ + +YNILI G+CK RN+++A+ EM+ +G R A++YN
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675
Query: 209 LFMAINN 215
L +N
Sbjct: 676 LIRLLNK 682
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 55/335 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N ++N L+K LCT GRI +A +LF ++ P+V+T+ + G
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMV-------------HGY 295
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++ T ++ + G ++ V+ L L +G++ +A ++E M+
Sbjct: 296 CTLSELETAIKLLSEMAARGLELNPVAYTSVIAL------LCDEGQVSDAVRVVEDMVMH 349
Query: 142 DVNPNTCTYNTLMDGFA----------WW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
V + + T+M GF W+ +G D +Y LING C+ +++A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +EM +G+ DA TY L M V P+ YT DG
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G V A ++ + + L I T N LI+GLCK G L+ A + M GL P
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM-IDMDEAGLKP 528
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
DV TY +I C+ + +A+ LL +M + G++P
Sbjct: 529 DVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 151/349 (43%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + N V + S+I LC EG++ +A R+ + + + + F T+
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A N F+EM + G+ D VT T +I+GLC+ G M D+G+
Sbjct: 367 RKGDLAAARNWFDEM-QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
D VT V+ D K GKM EA + M+Q+ V PN TY L DG
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SKG ++++YN LING CK N+E A+ +M G++
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK---------------- 527
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD + YTT I L ++ + A + + + TI T N L++G C GR++
Sbjct: 528 -PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ + P+ TYN ++ +C E + + M + PN
Sbjct: 587 LLEWMLEK-NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 238 EAMKVFSAIGNHKCVLTIETC--NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
EA+++F + TC N L+ LC GR+K A +F M +P PDVVTY
Sbjct: 240 EAVQLFQELPEKN------TCSYNILLKALCTAGRIKDAHQLFDE-MASP---PDVVTYG 289
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IM+HG+C + + A LL +M GLE N
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELN 319
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 164/350 (46%), Gaps = 49/350 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++VT N+++ GLC G + E L++++ C NV ++N L ++ +
Sbjct: 322 PDVVTCNAMLNGLCKAGNVEECFELWEEMGK-CSLRNVRSYNIFLKGLFENGKVDDAMML 380
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFM------------MDQGMRPDVVTLNVMTDNLSKDG 126
+ + + D T ++ GLC +G++ + GM D + + + L K+G
Sbjct: 381 WDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEG 440
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
+++EA+ ++E+M +R N+ N L+DGF SK GC V SYN
Sbjct: 441 RLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYN 500
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------N 214
ILING + +A EML +G + D TY+TL +
Sbjct: 501 ILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDT 560
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
PD +Y I L +G V +A++++S + KCV + T N +++G K+G ++A
Sbjct: 561 GHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCV-NLVTHNTIMEGFYKVGNCEMA 619
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
I+ ++++ L PD+++YNI + G C G+ A G L D G P
Sbjct: 620 SKIWAHILEDE-LQPDIISYNITLKGLCSCGRVTDAVGFLDDALVRGFLP 668
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 67/343 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKL--NVFCCDPNVITFNTLALV----------- 67
P++V++N +I GLC GR E +++++ N CD F AL+
Sbjct: 252 PSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCD----LFTYSALIHGLSEAGDLGG 307
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMRP----DVVTLNVM 118
A ++EEMV G +PDVVTC +++GLCK G F + + M +V + N+
Sbjct: 308 ARKVYEEMV---GRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIF 364
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW----------------WSK 162
L ++GK+++A L + +++ D + TY ++ G W
Sbjct: 365 LKGLFENGKVDDAMMLWDGLLEAD----SATYGVVVHGLCWNGYVNRALQVLEEAEHREG 420
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G D ++Y+ LIN CK+ +++A + M G + + SHV
Sbjct: 421 GMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFN-----------------SHV 463
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDG K+ + A+KVF + C LT+ + N LI+GL + R + A+D + ++
Sbjct: 464 CNVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEML 523
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G PD++TY+ +I G + A L +TG +P+
Sbjct: 524 EK-GWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPD 565
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 166/377 (44%), Gaps = 61/377 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL + + +P+ +T+ +LI G+ G + A +F ++ +P+V+ +
Sbjct: 162 GEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCY 221
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG 107
N + + A ++E ++ E V P VV+ +I GLCK +G + +
Sbjct: 222 NMIIDGFFKRGDFVKAGEMWERLLREELVF--PSVVSYNVMISGLCKCGRFSEGLEIWER 279
Query: 108 MRP-----DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M+ D+ T + + LS+ G + A + E M+ R V P+ T N +++G
Sbjct: 280 MKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGN 339
Query: 157 ----FAWWS---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI-RADATTYNT 208
F W K +V SYNI + G ++ V+DA+ ML +G+ AD+ TY
Sbjct: 340 VEECFELWEEMGKCSLRNVRSYNIFLKGLFENGKVDDAM-----MLWDGLLEADSATYGV 394
Query: 209 LFMAI--------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
+ + + D Y++ I+ L K G + EA V +
Sbjct: 395 VVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMNK 454
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
C CN LIDG K +L A +F M G + VV+YNI+I+G + + +
Sbjct: 455 RGCKFNSHVCNVLIDGFVKHSKLDSAVKVFRE-MSGKGCSLTVVSYNILINGLLRAERFR 513
Query: 309 KANGLLLDMEETGLEPN 325
+A + +M E G +P+
Sbjct: 514 EAYDCVNEMLEKGWKPD 530
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 146/341 (42%), Gaps = 60/341 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+PN+ T+N L+K +C +G + L + P+ IT+ TL AL
Sbjct: 145 SPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALE 204
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQG-----------MRPDVVTLNVMT 119
+F+EM E GV +PDVV IIDG K G + G + P VV+ NVM
Sbjct: 205 VFDEM-RERGV--EPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMI 261
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
L K G+ E + E M + + + TY+ L+ G + +G R
Sbjct: 262 SGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVR 321
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV + N ++NG CK NVE+ L EM +R + Y
Sbjct: 322 PDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLR------------------NVRSYNI 363
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++ GL++NG V +AM ++ + T ++ GLC G + A +
Sbjct: 364 FLKGLFENGKVDDAMMLWDGLLEADSA----TYGVVVHGLCWNGYVNRALQVLEEAEHRE 419
Query: 286 G-LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + D Y+ +I+ CKEG+ +A+G++ M + G + N
Sbjct: 420 GGMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFN 460
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 141/330 (42%), Gaps = 58/330 (17%)
Query: 41 EAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEEMVNEF----GVICKPDVVTCTNI 93
EA +F+ + +VF C P + +FNTL A V + + N F P+V T +
Sbjct: 95 EALHVFQTMPHVFGCSPTIRSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVL 154
Query: 94 IDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
+ +CK G +M GM PD +T + ++K G + A + + M +R V
Sbjct: 155 MKVMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGV 214
Query: 144 NPNTCTYNTLMDGF----------AWWSKGCRHD-----VYSYNILINGYCKDRNVEDAV 188
P+ YN ++DGF W + R + V SYN++I+G CK + +
Sbjct: 215 EPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGL 274
Query: 189 SLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGL 230
+ M + D TY+ L ++ V PD ++GL
Sbjct: 275 EIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGL 334
Query: 231 YKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G V E +++ +G KC L + + N + GL + G++ A M++ + L
Sbjct: 335 CKAGNVEECFELWEEMG--KCSLRNVRSYNIFLKGLFENGKVDDA-----MMLWDGLLEA 387
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
D TY +++HG C G +A +L + E
Sbjct: 388 DSATYGVVVHGLCWNGYVNRALQVLEEAEH 417
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 51/337 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRIL--EAARLFKKLNVFCCDPNVITF------NTLALVALN 70
F+P+ F+ +++ + + +L A R+ ++ C + +T + AL+
Sbjct: 39 FSPSSAVFHHILRRVAADPGLLLAHAPRIIAAIHCPCPEDVPLTLLKAYAKTRMPNEALH 98
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGFMMDQGMR--PDVVTLNVMTD 120
+F+ M + FG C P + + +++ ++ F + R P+V T NV+
Sbjct: 99 VFQTMPHVFG--CSPTIRSFNTLLNAFVESHQWARAENFFKYFEAARVSPNVETYNVLMK 156
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRH 166
+ K G+ E+ LL M ++P+ TY TL+ G A +G
Sbjct: 157 VMCKKGEFEKGRGLLTWMWGAGMSPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEP 216
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
DV YN++I+G+ K + A + +L E + V P Y
Sbjct: 217 DVVCYNMIIDGFFKRGDFVKAGEMWERLLREEL----------------VFPSVVSYNVM 260
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL K G E ++++ + ++ + T + LI GL + G L A ++ M G
Sbjct: 261 ISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEE-MVGRG 319
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ PDVVT N M++G CK G ++ L +M + L
Sbjct: 320 VRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLR 356
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 99/217 (45%), Gaps = 31/217 (14%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEM---VNE-FG 80
N LI G ++ A ++F++++ C V+++N L L+ F E VNE
Sbjct: 465 NVLIDGFVKHSKLDSAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLE 524
Query: 81 VICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEE 130
KPD++T + +I GL + M +D G +PD++ N++ L GK+E+
Sbjct: 525 KGWKPDIITYSTLIGGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVED 584
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF------AWWSKGCRH--------DVYSYNILIN 176
A L + Q+ N T+NT+M+GF SK H D+ SYNI +
Sbjct: 585 ALQLYSTLRQKKC-VNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITLK 643
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G C V DAV + L G A T+N L A+
Sbjct: 644 GLCSCGRVTDAVGFLDDALVRGFLPTAITWNILVRAV 680
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIG 269
+A + P V T + K EA+ VF + + C TI + N L++ +
Sbjct: 68 IAAIHCPCPEDVPLTLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFVESH 127
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A + F + ++P+V TYN+++ CK+G+ +K GLL M G+ P+
Sbjct: 128 QWARAENFFKYF-EAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPD 182
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 49/372 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L ++ P+ T+ LIK C G +A ++ ++ C PNV T+
Sbjct: 256 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 315
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF---------MMDQ 106
L L EE F + K P ++T +I+G CK+G+ +M++
Sbjct: 316 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 375
Query: 107 G-MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G +P++ T N + + L + K +A LL ++ + P+ TYN L+DGF
Sbjct: 376 GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM 435
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ S G D +++ LI+G CK +E A + M+ +GI D T+ L
Sbjct: 436 AFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALID 495
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N +H + ++D L K+ + EA + + + V
Sbjct: 496 GHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP 555
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
++ T LI+G C+ G ++ + M+ G +P+V TY I+I+G C G+ ++A +
Sbjct: 556 SVVTHTILIEGHCRAGETALSLKMLER-MKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 614
Query: 314 LLDMEETGLEPN 325
L M G+ PN
Sbjct: 615 LFSMSSFGVSPN 626
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 158/343 (46%), Gaps = 70/343 (20%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF--KKLNV-FCCDPNVITFNT 63
F++ R++ F + + +++ LC G ++AA +F K L + F D +V T
Sbjct: 155 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNG-FVQAAEMFCCKVLRLGFGLDTHVCTSLV 213
Query: 64 LALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLN 116
LA A +FE+M E C+P+ VT + +I GLC
Sbjct: 214 LANCRRDDLGEAFRVFEKMSKEEN--CRPNSVTYSILIHGLC------------------ 253
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSK 162
+ G++EEA L + M+++ P+T TY L+ +K
Sbjct: 254 -------EAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
C +V++Y ILI+ C++ +E+A + R+ML G+ T+N L
Sbjct: 307 ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL------------- 353
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
I+G K G+V+ A ++ S + C I T N L++GLC++ + A+ + ++
Sbjct: 354 ----INGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVV 409
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N GL PD VTYNI++ GFCKEGQ A + M GLEP+
Sbjct: 410 DN-GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 451
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 165/375 (44%), Gaps = 52/375 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ ++ F+LL R++ + P+ VT+N L+ G C EG++ A +F +N +P+ T
Sbjct: 395 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 454
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKDGF----------MM 104
F L L L E+ G + K D VT T +IDG CK G M+
Sbjct: 455 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 514
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
+ T N D L KD K+ EAN +L M++ + P+ T+ L++G +
Sbjct: 515 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 574
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC +VY+Y I+ING C + VE+A ++ M S G+ + TY L
Sbjct: 575 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 634
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N P+SH+Y+ + G + + A + S
Sbjct: 635 KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 694
Query: 253 LTIET--CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L+ E NCL + ++ + A I + + T D+ YN ++ G CKEG+ +A
Sbjct: 695 LSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDL--YNFLVVGLCKEGRIIEA 752
Query: 311 NGLLLDMEETGLEPN 325
+ L DM + GL P+
Sbjct: 753 DQLTQDMVKHGLFPD 767
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 29/269 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + +L R+ + +PN+ T+ +I GLC GR+ EA + ++ F PN T+
Sbjct: 571 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 630
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
L A V + + K ++I L + + + ++
Sbjct: 631 AVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL 690
Query: 120 DNLSKDGKMEEANCLLEVMIQ-RDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-YNILING 177
D S + + NCL + + DV+ + + K C YN L+ G
Sbjct: 691 DARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEI--------KKCGVPTEDLYNFLVVG 742
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI---NNVPPDS 220
CK+ + +A L ++M+ G+ D + + FM + N P
Sbjct: 743 LCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSF 802
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
Y I GL G V EA K+ S + H
Sbjct: 803 ASYCWVIHGLRNEGRVQEAQKLVSDLVRH 831
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 172/373 (46%), Gaps = 52/373 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + GR+L + P++ ++N+LI G EG + +A LF K+ PNV+T++
Sbjct: 133 RPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYS 192
Query: 63 TL-----ALVALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMDQGMR------- 109
+L ++ E ++ + G +P+ +T +I G G M + +R
Sbjct: 193 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSG-MWKESVRVFKEMSS 251
Query: 110 ----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---- 161
PDV N L K G+++EA + + M+ + P+ +Y L+ G+A
Sbjct: 252 SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAG 311
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+G D + +N LIN Y + ++ ++ + +M +G+ D T++T+
Sbjct: 312 MDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVIS 371
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
A VPPD+ VY+ I G +++A ++ S + +
Sbjct: 372 AFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 431
Query: 254 T-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
I+ +I+ LCK GR+ D+ +++ G P+++T+N ++ G+C G ++A G
Sbjct: 432 PCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT-GQRPNLITFNSLVDGYCLVGNMKEAVG 490
Query: 313 LLLDMEETGLEPN 325
LL ME G+EP+
Sbjct: 491 LLDSMESVGVEPD 503
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ FN+LI G + ++ +F+ + +P++ITF+T+ A L ++ + +
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 385
Query: 79 FGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTL-NVMTDNLS 123
F + PD + +I G C M+ +G+ P + + +NL
Sbjct: 386 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 445
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K+G++ E +++++I PN T+N+L+DG+ + S G D+Y
Sbjct: 446 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIY 505
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDS----- 220
+YN L++GYCK ++DA++L R+ML + + + +YN LF A +
Sbjct: 506 TYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEM 565
Query: 221 ---------HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
H Y T + GL +N EA + + + I T N +I + K+GR
Sbjct: 566 IESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRR 625
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F + GL P ++TY +MI KE + A+ L ME++ P+
Sbjct: 626 QEAKELFAAI-STYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPD 678
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 63/268 (23%)
Query: 42 AARLFKKLNVFCCD---PNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC 98
A LFK+++ C P + T+N L +N + +PD+ GL
Sbjct: 99 AVELFKRMDRCACPEAAPTIYTYNIL-----------INCYRRARRPDL--------GLP 139
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
G ++ G+ PDV + N + D SK+G++++A+ L M ++ + PN TY++
Sbjct: 140 VFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSS------ 193
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
LING CK + ++ A + R+M+ G+R + TYN L
Sbjct: 194 ---------------LINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLI-------- 230
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
H Y+T G++K E+++VF + + V + CN + LCK GR+K A DIF
Sbjct: 231 --HGYST--SGMWK-----ESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIF 281
Query: 279 -HMLMQNPGLTPDVVTYNIMIHGFCKEG 305
M+++ P PDV++Y ++HG+ G
Sbjct: 282 DSMVLKGP--KPDVISYGALLHGYATAG 307
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 132/337 (39%), Gaps = 86/337 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + G ++ I+ + PN++TFNSL+ G C G + EA L + +P++ T+
Sbjct: 448 GRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 507
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL +DG C
Sbjct: 508 NTL-----------------------------VDGYC----------------------- 515
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K G++++A L M+ + V + +YN ++ G + G
Sbjct: 516 --KHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 573
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+++Y ++ G C++ ++A L ++ S ++ D T+N + I
Sbjct: 574 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIV-----------------I 616
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
++K G EA ++F+AI + V TI T +I L K + A ++F M+
Sbjct: 617 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSS-MEKSSC 675
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
TPD N +I +G+ KA L +++ G+ P
Sbjct: 676 TPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP 712
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 185 EDAVSLCREML-SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+DA L E+L A A N L A+ PP + +E K
Sbjct: 54 DDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDV-------PALAVELFKRM 106
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ TI T N LI+ + R + +F L++ GL PDV +YN +I GF K
Sbjct: 107 DRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRT-GLGPDVFSYNALIDGFSK 165
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
EG+ KA+ L MEE G+ PN
Sbjct: 166 EGEVDKAHDLFYKMEEQGIMPN 187
>gi|449453792|ref|XP_004144640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Cucumis sativus]
Length = 566
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 148/334 (44%), Gaps = 55/334 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+ N T+NSL++GLC G + ++ +L +L PN T++ L A A
Sbjct: 163 YPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
L +E++ + G KP++V+ ++ GLCK+G D +G P+VV+ N++
Sbjct: 223 KLLDEIIAKGG---KPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILL 279
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------------CR 165
+L +G+ EEAN LL M + +P+T TYN L+ + +
Sbjct: 280 RSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFK 339
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
SYN +I CKDR V+ V +M+ + TYN
Sbjct: 340 PTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNA----------------- 382
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I L + G V EA + ++GN + T E +I LC+ G A+ + + M
Sbjct: 383 -IATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYE-MTKY 440
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
G TPD TY+ +I G C EG +A + MEE
Sbjct: 441 GFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEE 474
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 142/338 (42%), Gaps = 48/338 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LL I+ PN+V++N L+ GLC EGR +A +LF++L PNV+++N L +L
Sbjct: 224 LLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLC 283
Query: 68 ALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+EE + G P VT +I L G M+ +P
Sbjct: 284 NEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTAS 343
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------MDGFAWWSKGC 164
+ N + L KD K++ L+ M+ R NPN TYN + + F+
Sbjct: 344 SYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLG 403
Query: 165 RHDVYS----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
+S Y I+I C+ N A L EM G PDS
Sbjct: 404 NKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGF-----------------TPDS 446
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
Y++ I GL G + EA+++FS + L E N LI G CK R +A D+F
Sbjct: 447 FTYSSLIRGLCMEGMLNEAIEIFSVM-EENIKLDTENYNSLILGCCKSRRTDLALDVFE- 504
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+M G + TY I++ G E + A +L +++
Sbjct: 505 IMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQ 542
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 40/242 (16%)
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
FM+++G +PDV + +L K KM +A ++E+MI + P
Sbjct: 87 FMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIP---------------- 130
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------- 213
D SY L++ C+ NV A+ L +M G + TYN+L +
Sbjct: 131 -----DAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQ 185
Query: 214 ----------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
+ P+++ Y+ ++ YK EA K+ I + + N L+
Sbjct: 186 SLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLT 245
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK GR + A +F L + G +P+VV+YNI++ C EG+ ++AN LL +M+
Sbjct: 246 GLCKEGRTEDAMQLFREL-PSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERS 304
Query: 324 PN 325
P+
Sbjct: 305 PS 306
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 112/265 (42%), Gaps = 42/265 (15%)
Query: 84 KPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KPDV T ++ LCK M+ G+ PD + + +L + G + A
Sbjct: 94 KPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQ 153
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
L++ M + NT TYN+L+ G KG + Y+Y+ L+
Sbjct: 154 LVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAY 213
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K+R ++A L E++++G + + +YN L + GL K G +A
Sbjct: 214 KERGADEASKLLDEIIAKGGKPNLVSYNVL-----------------LTGLCKEGRTEDA 256
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
M++F + + + + N L+ LC GR + A ++ M +P VTYNI+I
Sbjct: 257 MQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEA-NVLLAEMDGDERSPSTVTYNILIG 315
Query: 300 GFCKEGQHQKANGLLLDMEETGLEP 324
G+ + A +L +M +P
Sbjct: 316 SLTLHGRTEHALEVLEEMIRARFKP 340
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 121/285 (42%), Gaps = 47/285 (16%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A+ + E M+ G+I PD + T ++ LC+ G M + G + T N
Sbjct: 116 AIKVMEMMIGS-GII--PDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNS 172
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ L G + ++ LL+ +IQ+ + PN TY+ L++ +KG
Sbjct: 173 LVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKG 232
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
+ ++ SYN+L+ G CK+ EDA+ L RE+ S+G + +YN L ++
Sbjct: 233 GKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEAN 292
Query: 214 --------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ P + Y I L +G A++V + + T + N +I L
Sbjct: 293 VLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARL 352
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
CK ++ + +M P+ TYN I C+EG Q+A
Sbjct: 353 CKDRKVDLVVKCLDQMMYR-HCNPNEGTYN-AIATLCEEGMVQEA 395
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
S+ +R + ++ FM PD T + L K + +A+KV + +
Sbjct: 73 SKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDA 132
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
+ L+ LC+ G + A + M+ G + TYN ++ G C G ++ LL
Sbjct: 133 ASYTFLVSSLCRKGNVGYAMQLVDK-MEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLD 191
Query: 316 DMEETGLEPN 325
+ + GL PN
Sbjct: 192 RLIQKGLVPN 201
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 58/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLF- 72
+P++ TFN++I GLC G++ +A + K + + P+V T+N+L A N++
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247
Query: 73 -----EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
+EMV E G+ P VT +I+G CK+ M QG+ VVT N
Sbjct: 248 VDMLLKEMV-EAGI--SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---------WSKG----- 163
+ L +GK+EE L+E M ++PN T+ ++ GF W G
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
DV YNILI+ Y + +EDA+++ M +GI + TTYN L
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + D Y I L G V +A+K+ + T N +I G
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G +K A++I M+ +VVTYN+ I FC+ G+ +AN LL +M + L PN
Sbjct: 485 CDKGNIKSAYEI-RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPN 543
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 54/330 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LL ++ + +P VTF LI G C A R+F+++ +V+T+N+L
Sbjct: 250 MLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
+ L EEM + G+ P+ +T ++ G CK G M D + +
Sbjct: 310 CSEGKVEEGVKLMEEM-EDLGL--SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----WWS---- 161
PDVV N++ D + GKME+A + E M ++ ++PN TYN L+ GF+ W S
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 162 ------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KG DV +YN+LI C V AV L EM G+ + TYNT+
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI------ 480
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I G G + A ++ + + + + T N I C+IG++ A
Sbjct: 481 -----------IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
D+ + ++ + L P+ +TY + G ++G
Sbjct: 530 DLLNEML-DKCLVPNGITYETIKEGMMEKG 558
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 118/322 (36%), Gaps = 106/322 (32%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
RP ++N + L +++ A ++R V+P+ T+NT++ G
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212
Query: 158 ------AWW----------------SKGCRHDVY-------------------SYNILIN 176
AW KG ++Y ++ +LIN
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------------------- 210
GYCK+ N AV + EM +GI A TYN+L
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332
Query: 211 ---------------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
M NV PD +Y ID + G + +AM V
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
A+ + T NCLI G + G + A + M+ G+ DVVTYN++I C
Sbjct: 393 EAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDE-MKEKGIEADVVTYNVLIGALCC 451
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+G+ +KA LL +M E GLEPN
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPN 473
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 38/242 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L+ + +PN +TF ++KG C +G + +A + +P+V+ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372
Query: 62 NTLALVALNL--------FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
N L V L +E + + G+ P+V T +I G + G M
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGI--SPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++G+ DVVT NV+ L G++ +A LL+ M + + PN TYNT++ GF KG
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC--DKG 488
Query: 164 --------------CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
CR +V +YN+ I +C+ +++A L EML + + + TY
Sbjct: 489 NIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYE 548
Query: 208 TL 209
T+
Sbjct: 549 TI 550
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVP---PDSHVYTTYIDGLYKNGFVLEAM 240
+ D + L S+ +RA Y+ +A + P P + + GL V A
Sbjct: 121 IADMLVLALARASQPLRA----YDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K F + + I T N +I GLC+IG+L+ A D+ + + GL P V TYN +I G
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDG 235
Query: 301 FCKE---GQHQKANGLLLDMEETGLEP 324
+CK+ G + LL +M E G+ P
Sbjct: 236 YCKKGGAGNMYHVDMLLKEMVEAGISP 262
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 52/351 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F ++ + P++ T+N++I GLC +GR A + ++ P+ T+NTL +
Sbjct: 172 AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLV 231
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
+ C+ D N + G M+ QG+ PD+V+ + + S++
Sbjct: 232 ES--------------CRRD-----NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR 272
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
+++A M + + P+ Y LM G+ +GC DV +YN
Sbjct: 273 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 332
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAIN 214
++NG CK++ + DA L EM+ G D T+ TL M
Sbjct: 333 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQR 392
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
N+ PD Y T IDG K G + +A +++ + + K T LI+ C +G + A
Sbjct: 393 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEA 452
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ ++++ G+ P +VT N +I G+C+ G KA+ L M G+ P+
Sbjct: 453 FRLWDVMIE-KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD 502
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 152/331 (45%), Gaps = 61/331 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++ S N+ T N ++ LC +G+ + ++ +++T+NTL
Sbjct: 109 VVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTL--------- 159
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLNVMTDNLSKDGKM 128
G C+ +GL ++ F M D+G++P + T N + + L K G+
Sbjct: 160 -----IGAYCR----------EGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRY 204
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLM------DGFA--------WWSKGCRHDVYSYNIL 174
A +L M+ ++P+T TYNTL+ D F+ +G D+ S++ L
Sbjct: 205 ARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSL 264
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I + ++R+++ A+ R+M G+ PD+ +YT + G +NG
Sbjct: 265 IAVFSRNRHLDQALVYFRDMKKFGL-----------------VPDNVIYTVLMHGYCRNG 307
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+LEA+K+ + CVL + N +++GLCK L A +F +++ G PD T+
Sbjct: 308 NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER-GALPDFYTF 366
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+IHG C++G KA L M + ++P+
Sbjct: 367 TTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 30/219 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE-EMVNEF 79
P+ TF +LI G C +G + +A LF + P+++ +NTL + E E +E
Sbjct: 361 PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASEL 420
Query: 80 --GVICK---PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
G+I + P+ +T +I+ C G M+++G++P +VT N + +
Sbjct: 421 WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCR 480
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK----GCRHDVYS 170
G +A+ L MI + V P+ +YNTL++GF W +K G D+ +
Sbjct: 481 SGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIIT 540
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YN+++NG+C+ +++A + R+M+ +GI D +TY L
Sbjct: 541 YNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTAL 579
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 102/234 (43%), Gaps = 36/234 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L G + P++V +N+LI G C G + +A+ L+ + PN IT+
Sbjct: 377 GNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITY 436
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A L++ M+ E G+ KP +VTC +I G C+ G
Sbjct: 437 GILINAYCSVGHVSEAFRLWDVMI-EKGI--KPTLVTCNTVIKGYCRSGDSSKADEFLGR 493
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ +G+ PD ++ N + + ++ M++A + M + + P+ TYN +M+GF
Sbjct: 494 MIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGR 553
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
KG D +Y LING+ N+ +A EML G D
Sbjct: 554 MQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPD 607
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
SKG + + N L+ G K VE A + RE++ GI + T N +
Sbjct: 76 SKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIM----------- 124
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
++ L K+G + S + + + T N LI C+ G L+ A++I +
Sbjct: 125 ------VNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + GL P + TYN +I+G CK+G++ +A G+L++M GL P+
Sbjct: 179 -MADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPD 222
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-NNVPPDSHVYTTYIDGLYK 232
+++ + + R + DA +L M+ + L ++ N ++ V+ I +
Sbjct: 1 MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQ 60
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ E + F + + +++I CN L+ GL KI +++AW++ H + G+ +V
Sbjct: 61 ARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEV-HREVVRSGIELNVY 119
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
T NIM++ CK+G+ L +ME G+
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGI 149
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 149/339 (43%), Gaps = 57/339 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P+ +T+++LI C GR A +L ++ P + L + A
Sbjct: 226 CF-PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGA 284
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVM 118
L+LFEEM +++ C+PDV T T +I GL K G M +G RPD + +N M
Sbjct: 285 LSLFEEMRHQY---CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNM 341
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AWWSK----G 163
+ L K G++++A L + M P+ TYNT++ +W+ + G
Sbjct: 342 INFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG 401
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------- 216
++Y+ILI+G+CK +E A+ L EM +G Y +L A+
Sbjct: 402 ISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLAC 461
Query: 217 -----------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
S VY I L K G + +A+ +F + C + N L+ GL
Sbjct: 462 ELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ G L A MQ G PD+ +YNI+++G K+
Sbjct: 522 ARTGMLDEALSTMRR-MQEHGCIPDINSYNIILNGLQKQ 559
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 131/318 (41%), Gaps = 59/318 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
+ +++ L + +A +F ++ C P +N++ ++ ++ L+ EM
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMS 221
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDG 126
E C PD +T + +I CK G M D GM+P ++ K
Sbjct: 222 TEGH--CFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLN 279
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
+ A L E M + CR DV++Y LI G K +++
Sbjct: 280 DVHGALSLFEEMRH---------------------QYCRPDVFTYTELIRGLGKAGRIDE 318
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A EM EG R PD+ V I+ L K G + +AMK+F +
Sbjct: 319 AYHFFYEMQREGCR-----------------PDTIVMNNMINFLGKAGRLDDAMKLFQEM 361
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
G +C+ ++ T N +I L + + M+ G++P TY+I+I GFCK +
Sbjct: 362 GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 421
Query: 307 HQKANGLLLDMEETGLEP 324
+KA LL +M+E G P
Sbjct: 422 MEKAMMLLEEMDEKGFPP 439
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 162/374 (43%), Gaps = 72/374 (19%)
Query: 4 ASGGFVLLG-----RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNV 58
ASGG V L R++ + PN T+N LI GLC G ++A +LF ++ PNV
Sbjct: 187 ASGGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPNV 246
Query: 59 ITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR 109
T L A NL M ++ C PD VT + GLCK G + + R
Sbjct: 247 KTHTILLSSMCNAGQLKEAENLLHSMEDKG---CPPDEVTYNAFLSGLCKAGRVDEAIER 303
Query: 110 PDVVT-----------LNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM--- 154
+ + + + D L G+ EE C +EV+ Q DV+P+ Y ++
Sbjct: 304 LEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGC 363
Query: 155 -------DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
D FA++ KG D + YN L+ C +++ A SL EM+
Sbjct: 364 AEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEMVR------- 416
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
NNV D H YTT I GL K V EAM+VF + C ++ T N LID
Sbjct: 417 ----------NNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLID 466
Query: 264 GLCKIGRLKIAWDIFHMLM--QNPGL----------TPDVVTYNIMIHGFCKEGQHQKAN 311
GL + RL+ A +F+ + NP L D T ++ C+ GQ KA
Sbjct: 467 GLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAY 526
Query: 312 GLLLDMEETGLEPN 325
LL + ++G+ P+
Sbjct: 527 KLLRGIIDSGVVPD 540
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 111/277 (40%), Gaps = 66/277 (23%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK 127
A+ F M EFG C+P ++ L G G P + L +
Sbjct: 158 AVEAFSRMEGEFG--CRPTTFVYNAVLRVLVASG-----GAVPLALALY---------NR 201
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
M A CL PN TY N+LI+G CK DA
Sbjct: 202 MVAAGCL----------PNRATY---------------------NVLIHGLCKRGTPVDA 230
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDG 229
+ L EM+S GI + T+ L ++ N PPD Y ++ G
Sbjct: 231 LKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSG 290
Query: 230 LYKNGFVLEAMKVFSAIGNHKC-VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L K G V EA++ A+ + VL ++ +CLIDGL GR + + + +++ ++
Sbjct: 291 LCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVS 350
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+V Y IMI G + G+ A +M+E G P+
Sbjct: 351 PDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPD 387
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 133/325 (40%), Gaps = 69/325 (21%)
Query: 2 GRASGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
GR GF +L +P++V + +I+G GR +A F ++ P+
Sbjct: 331 GRYEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFC 390
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NTL A +L EMV V+ D+ T T +I GLCK+
Sbjct: 391 YNTLLKALCDAGDLDGARSLMSEMVRNNVVL---DIHTYTTMIIGLCKEQLVDEAMQVFD 447
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM----------------------- 138
M++ G P V+T NV+ D L + ++EEA L M
Sbjct: 448 GMVEVGCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSE 507
Query: 139 -IQRDVNPNTCTYNTLMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
+Q+ V + C ++ + G DV +YN L+NG CK RN++ A+ L RE
Sbjct: 508 TLQKLVE-SMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRE 566
Query: 194 MLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ +G D TY TL ID L + +A+ +F I +
Sbjct: 567 LQVKGFPLDEITYGTL-----------------IDSLLRAHRYNDALTLFQDILHSGGTP 609
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIF 278
++ N ++ LC++ +L A +++
Sbjct: 610 SMPIYNSMMRSLCRMQKLSQAINLW 634
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 62/347 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--------------- 65
P+++T+N LI GL R+ EA LF K+ V +P++ TL
Sbjct: 456 PSVMTYNVLIDGLYRAHRLEEARMLFYKMEV-GNNPSLFLRLTLGANQVRDSETLQKLVE 514
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFM------MDQG 107
L A L +++ GV+ PDVVT +++GLCK DG + +G
Sbjct: 515 SMCQSGQVLKAYKLLRGIIDS-GVV--PDVVTYNTLLNGLCKVRNLDGALRLFRELQVKG 571
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-- 165
D +T + D+L + + +A L + ++ P+ YN++M K +
Sbjct: 572 FPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAI 631
Query: 166 -----HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT----TYNTLFMAINNV 216
H YN+L ++ +S R+ EG +A + + ++N+
Sbjct: 632 NLWFDHLPRKYNLLAQ--------DEVISSARKKFEEGCLHEAVRELIKIDQEYGSVNSC 683
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P YT ++ GL + G + +A+K+F + +T C L LC G L A D
Sbjct: 684 P-----YTIWLIGLIQAGRIEDALKIFHILEESGIDITPACCVHLSKYLCLEGNLGAAVD 738
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
+ ++ G T N ++ C + + A L M G +
Sbjct: 739 VMLYTLKK-GFTMRRYVGNRLLCSLCIHHRRKDAQALAWRMHLVGYD 784
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 160/362 (44%), Gaps = 67/362 (18%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALN---------LFEEMV 76
FNSLI+ G E+ +LF+ + P+V+TFN+L + L +++EM+
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKD 125
+GV PD T +I G CK+ M+D+G R DVVT N + D L +
Sbjct: 211 GTYGV--SPDTCTYNVLIRGFCKNS-MVDEGFRFFREMESFNCDADVVTYNTLVDGLCRA 267
Query: 126 GKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
GK+ A L+ M ++ +NPN TY TL+ G+ S+G + ++
Sbjct: 268 GKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMI 327
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTLF------------------ 210
+YN L+ G C+ ++ + M S+ G D T+NT+
Sbjct: 328 TYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFES 387
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-------IETCNCLID 263
M +P DS Y+T I L + G A ++F + + +L+ + N + +
Sbjct: 388 MKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFE 447
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
LC+ G+ K A + LM+ T D +Y +I G CKEG ++ LL+ M
Sbjct: 448 SLCEHGKTKKAERVIRQLMKRG--TQDPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFL 505
Query: 324 PN 325
P+
Sbjct: 506 PD 507
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 150/354 (42%), Gaps = 74/354 (20%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
F+P+ TFN++I C G + EA ++F+ + F + +++TL +A
Sbjct: 358 FSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAE 417
Query: 70 NLFEE------MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR-PDV 112
LF+E ++++FG KP + I + LC+ G +M +G + P
Sbjct: 418 QLFDELFEKEILLSKFG--SKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDPQS 475
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------- 157
T +M K+G E LL M++RD P+ Y+ L+DGF
Sbjct: 476 YTTVIMGH--CKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEK 533
Query: 158 -----------AWWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
W S KGC H+ +++ ++NV ++L E L +
Sbjct: 534 MLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVMM----LEKNVRQNINLSTESLQ--L 587
Query: 200 RADATTYNTLFMAINNVPPDSHVYT--TYIDGLYKNGFVLEAMK-VFSAIGNHKCVLTIE 256
+ F IN + + + L K G + EA K + ++ NH+ V I+
Sbjct: 588 LFGREQHERAFEIINLLYKNGYYVKIEEVAQFLLKRGKLSEACKLLLFSLENHQNV-DID 646
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
CN I LCKI ++ A+ + + L++N GL ++ + +I + G+ ++A
Sbjct: 647 LCNATILNLCKINKVSEAFSLCYELVEN-GLHQELTCLDDLIAALEEGGKREEA 699
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 157 FAW-WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
F W KG H SY I++ ++RN+ ++ R L ++ +
Sbjct: 98 FKWTQQKGFSHTPESYFIMLEILGRERNL----NVARNFL----------FSIEKHSKGT 143
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
V + + + I + G E+MK+F + + ++ T N L+ L K GR +A
Sbjct: 144 VKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAK 203
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+++ ++ G++PD TYN++I GFCK + +ME
Sbjct: 204 EVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREME 246
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 40/342 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + ++ ++ F P+ T++ +I LC ++ +A +LF+++ P+V T
Sbjct: 100 IGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYT 159
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+ TL + L E+ N F + C P+VVT T +I K M+
Sbjct: 160 YTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMML 219
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDGFAWWSKG 163
G P++VT + D K G+ E+A + M V+ P+ Y ++D S+
Sbjct: 220 SNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVD-----SEL 274
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+V +Y L++G CK V++A L M EG P+ +Y
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCE-----------------PNQIIY 317
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG K G + EA +VF+ + H C + T + LID L K RL +A + +++
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLE 377
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N P+VV Y M+ G CK G+ +A L+L MEE G PN
Sbjct: 378 N-SCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPN 418
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 145/360 (40%), Gaps = 75/360 (20%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----------ALVAL 69
P+ + FNSL+ C G A +L KK+ + P + +N L ++ +
Sbjct: 9 PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVI 68
Query: 70 NLFEEMVN---EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLN 116
L E N E GV+ + V N LC G MM +G PD T +
Sbjct: 69 GLAERAYNEMLEMGVVL--NKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYS 126
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK---- 162
+ L K+E+A L + M + + P+ TY TL+D F W+ +
Sbjct: 127 KVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQD 186
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
GC +V +Y LI+ Y K R + A + MLS G + TY L
Sbjct: 187 GCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTAL------------- 233
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL-----------------TIETCNCLIDGL 265
IDG K G +A ++++ + N K + + T L+DGL
Sbjct: 234 ----IDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGL 289
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
CK ++K A D+ M G P+ + Y+ +I GFCK G+ +A + M G PN
Sbjct: 290 CKAHKVKEARDLLET-MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPN 348
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 145/335 (43%), Gaps = 51/335 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+VT+ +L+ GLC ++ EA L + +++ C+PN I ++ L + L+ +E+
Sbjct: 277 PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEV 336
Query: 76 VNE-FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ G C P+V T +++ID L KD M++ P+VV M D L K
Sbjct: 337 FTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK 396
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+ +M ++ PN TY ++DGF SKGC + +
Sbjct: 397 VGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFIT 456
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +LIN C ++DA L EM TY P +Y I+G
Sbjct: 457 YRVLINHCCAAGLLDDAHKLLEEM--------KQTY---------WPKHIGMYRKVIEG- 498
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ + FV ++ + + + V + LID K GRL++A ++ L +
Sbjct: 499 FSHEFV-ASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN 557
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I + KA L DM G P
Sbjct: 558 --TYVSLIESLTLACKVDKAFKLYSDMTRRGFVPE 590
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 49/287 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +L ++L + PN+V + ++ GLC G+ EA RL + C PNV+T+
Sbjct: 364 RLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYT 423
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
M++ FG + D C ++ M +G P+ +T V+ ++
Sbjct: 424 A-----------MIDGFGKAGRVD--RCLELLQ------LMTSKGCAPNFITYRVLINHC 464
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------WWSKGCRHDVYS 170
G +++A+ LLE M Q + Y +++GF+ G +
Sbjct: 465 CAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPV 524
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y +LI+ + K +E A+ L E+ S A NT Y + I+ L
Sbjct: 525 YKLLIDNFIKAGRLEMALELHEELSS----FSAAYQNT--------------YVSLIESL 566
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
V +A K++S + V + CLI GL ++G+ + A +
Sbjct: 567 TLACKVDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQL 613
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 58/360 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLF- 72
+P++ TFN++I GLC G++ +A + K + + P+V T+N+L A N++
Sbjct: 188 SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYH 247
Query: 73 -----EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
+EMV E G+ P VT +I+G CK+ M QG+ VVT N
Sbjct: 248 VDMLLKEMV-EAGI--SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW---------WSKG----- 163
+ L +GK+EE L+E M ++PN T+ ++ GF W G
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
DV YNILI+ Y + +EDA+++ M +GI + TTYN L
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + D Y I L G V +A+K+ + T N +I G
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C G +K A++I M+ +VVTYN+ I FC+ G+ +AN LL +M + L PN
Sbjct: 485 CDKGNIKSAYEI-RTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPN 543
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 54/330 (16%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+LL ++ + +P VTF LI G C A R+F+++ +V+T+N+L
Sbjct: 250 MLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL 309
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMR 109
+ L EEM + G+ P+ +T ++ G CK G M D + +
Sbjct: 310 CSEGKVEEGVKLMEEM-EDLGL--SPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVE 366
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----WWS---- 161
PDVV N++ D + GKME+A + E M ++ ++PN TYN L+ GF+ W S
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGL 426
Query: 162 ------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
KG DV +YN+LI C V AV L EM G+ + TYNT+
Sbjct: 427 LDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTI------ 480
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
I G G + A ++ + + + + T N I C+IG++ A
Sbjct: 481 -----------IQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEAN 529
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
D+ + ++ + L P+ +TY + G ++G
Sbjct: 530 DLLNEML-DKCLVPNGITYETIKEGMMEKG 558
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 118/322 (36%), Gaps = 106/322 (32%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------- 157
RP ++N + L +++ A ++R V+P+ T+NT++ G
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212
Query: 158 ------AWW----------------SKGCRHDVY-------------------SYNILIN 176
AW KG ++Y ++ +LIN
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------------------- 210
GYCK+ N AV + EM +GI A TYN+L
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSP 332
Query: 211 ---------------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
M NV PD +Y ID + G + +AM V
Sbjct: 333 NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVK 392
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
A+ + T NCLI G + G + A + M+ G+ DVVTYN++I C
Sbjct: 393 EAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDE-MKEKGIEADVVTYNVLIGALCC 451
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
+G+ +KA LL +M E GLEPN
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPN 473
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 38/242 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G L+ + +PN +TF ++KG C +G + +A + +P+V+ +
Sbjct: 313 GKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIY 372
Query: 62 NTLALVALNL--------FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FM 103
N L V L +E + + G+ P+V T +I G + G M
Sbjct: 373 NILIDVYRRLGKMEDAMAVKEAMAKKGI--SPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++G+ DVVT NV+ L G++ +A LL+ M + + PN TYNT++ GF KG
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFC--DKG 488
Query: 164 --------------CRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
CR +V +YN+ I +C+ +++A L EML + + + TY
Sbjct: 489 NIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYE 548
Query: 208 TL 209
T+
Sbjct: 549 TI 550
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVP---PDSHVYTTYIDGLYKNGFVLEAM 240
+ D + L S+ +RA Y+ +A + P P + + GL V A
Sbjct: 121 IADMLVLALARASQPLRA----YDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAE 176
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
K F + + I T N +I GLC+IG+L+ A D+ + + GL P V TYN +I G
Sbjct: 177 KAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI-KAWGLAPSVATYNSLIDG 235
Query: 301 FCKE---GQHQKANGLLLDMEETGLEP 324
+CK+ G + LL +M E G+ P
Sbjct: 236 YCKKGGAGNMYHVDMLLKEMVEAGISP 262
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 49/372 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F L ++ P+ T+ LIK C G +A ++ ++ C PNV T+
Sbjct: 213 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 272
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGF---------MMDQ 106
L L EE F + K P ++T +I+G CK+G+ +M++
Sbjct: 273 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 332
Query: 107 G-MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G +P++ T N + + L + K +A LL ++ + P+ TYN L+DGF
Sbjct: 333 GNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM 392
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
+ S G D +++ LI+G CK +E A + M+ +GI D T+ L
Sbjct: 393 AFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALID 452
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N +H + ++D L K+ + EA + + + V
Sbjct: 453 GHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVP 512
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
++ T LI+G C+ G ++ + M+ G +P+V TY I+I+G C G+ ++A +
Sbjct: 513 SVVTHTILIEGHCRAGETALSLKMLER-MKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 571
Query: 314 LLDMEETGLEPN 325
L M G+ PN
Sbjct: 572 LFSMSSFGVSPN 583
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 50/333 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F++ R++ F + + +++ LC G ++AA +F CC + F
Sbjct: 112 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNG-FVQAAEMF------CCKVLRLGFGLDTH 164
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
V +L + D+ + + + K+ + RP+ VT +++ L + G
Sbjct: 165 VCTSLV------LANCRRDDLGEAFRVFEKMSKE-----ESCRPNSVTYSILIHGLCEAG 213
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++EEA L + M+++ P+T TY L+ +K C +V++Y
Sbjct: 214 RLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYT 273
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
ILI+ C++ +E+A + R+ML G+ T+N L I+G K
Sbjct: 274 ILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNAL-----------------INGYCK 316
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
G+V+ A ++ S + C I T N L++GLC++ + A+ + ++ N GL PD V
Sbjct: 317 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDN-GLLPDRV 375
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYNI++ GFCKEGQ A + M GLEP+
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 408
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 165/375 (44%), Gaps = 52/375 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ ++ F+LL R++ + P+ VT+N L+ G C EG++ A +F +N +P+ T
Sbjct: 352 VSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFT 411
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKDGF----------MM 104
F L L L E+ G + K D VT T +IDG CK G M+
Sbjct: 412 FTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMV 471
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-- 162
+ T N D L KD K+ EAN +L M++ + P+ T+ L++G +
Sbjct: 472 ENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETA 531
Query: 163 ------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
GC +VY+Y I+ING C + VE+A ++ M S G+ + TY L
Sbjct: 532 LSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLV 591
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M N P+SH+Y+ + G + + A + S
Sbjct: 592 KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 651
Query: 253 LTIET--CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L+ E NCL + ++ + A I + + T D+ YN ++ G CKEG+ +A
Sbjct: 652 LSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDL--YNFLVVGLCKEGRIIEA 709
Query: 311 NGLLLDMEETGLEPN 325
+ L DM + GL P+
Sbjct: 710 DQLTQDMVKHGLFPD 724
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 100/269 (37%), Gaps = 29/269 (10%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + +L R+ + +PN+ T+ +I GLC GR+ EA + ++ F PN T+
Sbjct: 528 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 587
Query: 62 NTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
L A V + + K ++I L + + + ++
Sbjct: 588 AVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL 647
Query: 120 DNLSKDGKMEEANCL-LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-YNILING 177
D S + + NCL V DV+ + + K C YN L+ G
Sbjct: 648 DARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEI--------KKCGVPTEDLYNFLVVG 699
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI---NNVPPDS 220
CK+ + +A L ++M+ G+ D + + FM + N P
Sbjct: 700 LCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSF 759
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
Y I GL G V EA K+ S + H
Sbjct: 760 ASYCWVIHGLRNEGRVQEAQKLVSDLVRH 788
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 53/357 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALN 70
+P++ T+++LI+ C + A ++ +++ C NV+T+NTL A+
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAF 298
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTD 120
+++ + ++G++ PD T II+GLCK G ++D+ G+ P+VV + + D
Sbjct: 299 GYKKEMEDYGLV--PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLID 356
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
+ G +EA +++ M V PN TY+ L+ G + G
Sbjct: 357 GFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMA 416
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D +YN++I G+ + N E+A L EM GI + TY+ +
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLL 476
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M + + P++ VY I G + G A + + + N LI GL +
Sbjct: 477 EQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNV 536
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A + + +++ G P+ TY +IHG+ G +KA LL M +GL PN
Sbjct: 537 GKMDEAIEYYDEMLEK-GFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPN 592
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 50/354 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A F ++ + + PN +T+++LI+GLC GR+ A+R+ K++ + +T+
Sbjct: 362 GNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421
Query: 62 NTLALVALNLFEE-----MVNEF--GVICKPDVVTCTNIIDGLCKDG----------FMM 104
N + L + ++NE G I P+V T + II+GLC+ G M+
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNEMRKGGI-SPNVYTYSIIINGLCQIGESERASGLLEQMI 480
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
G++P+ + ++G A L+ M + ++ P+ YN+L+ G +
Sbjct: 481 ADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMD 540
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG + + ++Y LI+GY N+E A L +ML+ G+
Sbjct: 541 EAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLN---------- 590
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
P+ +Y ++G +K+ + + ++ + +I L G
Sbjct: 591 -------PNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGH 643
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
++ A + ++ +N GL PD + Y +I GFCK +KA GLL +M + G+EP
Sbjct: 644 MQAAVSVLSVIEKN-GLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEP 696
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 160/376 (42%), Gaps = 58/376 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGRAS +L ++ + + +T+N +I+G + EA L ++ PNV T
Sbjct: 399 MGRAS---RILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYT 455
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
++ + + A L E+M+ + KP+ +I G C++G
Sbjct: 456 YSIIINGLCQIGESERASGLLEQMIADG---LKPNAFVYAPLISGYCREGSFSLACETLK 512
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M + + PD+ N + LS GKM+EA + M+++ PN TY L+ G++
Sbjct: 513 KMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAG 572
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ G + + Y ++ GY K N+E S + ML +G+ D Y
Sbjct: 573 NLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYG 632
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+ + N + PDS +Y + I G K + +A+ + +
Sbjct: 633 IVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKK 692
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
I N LIDG CK + A +IF+ ++ GL P+ VTY +I G+CK G +
Sbjct: 693 GIEPGISCYNALIDGFCKSDDISHARNIFNSIICK-GLPPNCVTYTTLIDGYCKAGDIRD 751
Query: 310 ANGLLLDMEETGLEPN 325
A L +M G+ P+
Sbjct: 752 AIDLYNEMLTEGVAPD 767
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 115/273 (42%), Gaps = 65/273 (23%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---- 156
GFM G+ PDV T + + + K +E A ++E M + + N TYNTL+ G
Sbjct: 232 GFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRA 291
Query: 157 ------FAWWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
F + + G D ++Y +ING CK + A L EM G+
Sbjct: 292 GAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLM------ 345
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
P+ VY+T IDG + G EA K+ + T + LI GLC
Sbjct: 346 -----------PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLC 394
Query: 267 KIGRLKIAWDIFHML----------------------------------MQNPGLTPDVV 292
K+GR+ A I + M+ G++P+V
Sbjct: 395 KLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVY 454
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY+I+I+G C+ G+ ++A+GLL M GL+PN
Sbjct: 455 TYSIIINGLCQIGESERASGLLEQMIADGLKPN 487
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 140/336 (41%), Gaps = 49/336 (14%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNL 71
+L F PN T+ LI G G + +A +L ++ +PN + + +
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608
Query: 72 FEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNV 117
E++ + + + PD +I L G M G+ PD +
Sbjct: 609 LEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS 668
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ K ME+A LL+ M ++ + P YN L+DGF + KG
Sbjct: 669 LISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKG 728
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+ +Y LI+GYCK ++ DA+ L EML+EG+ DA Y+ L +N
Sbjct: 729 LPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNS------- 781
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
L + F+ E M + I + N L+ G CK G+L+ H++M
Sbjct: 782 ----GDLQQALFITEEMIA-------RGYAIISSFNTLVHGFCKRGKLQETVKFLHVMM- 829
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ + P ++T ++ G + G+ +A+ + +++++
Sbjct: 830 DKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQ 865
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 154/404 (38%), Gaps = 89/404 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+LL + +PN+ T++ +I GLC G A+ L +++ PN + L
Sbjct: 437 AFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLIS 496
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQG 107
+A ++M E PD+ ++I GL G M +++G
Sbjct: 497 GYCREGSFSLACETLKKMTREN---LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKG 553
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+P+ T + S G +E+A LL M+ +NPN Y +++G+
Sbjct: 554 FQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVS 613
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+ KG D Y I+I+ +++ AVS+ + G+ D+ Y +L
Sbjct: 614 STLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGF 673
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
MA + P Y IDG K+ + A +F++I
Sbjct: 674 CKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNC 733
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY--------------------- 294
T LIDG CK G ++ A D+++ ++ G+ PD Y
Sbjct: 734 VTYTTLIDGYCKAGDIRDAIDLYNEMLTE-GVAPDAFVYSVLAAGCSNSGDLQQALFITE 792
Query: 295 -------------NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N ++HGFCK G+ Q+ L M + + P+
Sbjct: 793 EMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPS 836
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 141 RDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE------- 193
R N + + L+ F +WS+ + + D AVSLC
Sbjct: 89 RRCNSSPRLHPKLLLDFFYWSR--------TRLAPSAPAPDAFAHLAVSLCAAGLYPQAN 140
Query: 194 -MLSEGIRADAT---TYNTLFMAINNVPPDSH--VYTTYIDGLYKNGFVLEAMKVFSAIG 247
+L + IRA T +++ A++ V +D K G V + +V +
Sbjct: 141 GLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMK 200
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ ++ CN L+ L + L + W + M+ G++PDV TY+ +I +CK
Sbjct: 201 DLGLAPSLRCCNGLLKDLLRADALDLLWKV-RGFMEGAGISPDVYTYSTLIEAYCKVRDL 259
Query: 308 QKANGLLLDMEETG 321
+ A ++ +M ETG
Sbjct: 260 ESAKKVVEEMRETG 273
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 168/378 (44%), Gaps = 86/378 (22%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
++MS F P++VTF+S+I LC +G+++E L +++ PN +T+ TL
Sbjct: 250 MVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKD 309
Query: 66 -LVALNLFEEMV----------------------------NEFGVICK----PDVVTCTN 92
AL L+ +MV F ++ + P+VVT T
Sbjct: 310 YRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTA 369
Query: 93 IIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
++DGLCK G M+++ + P+VVT + M + K G +EEA L+ M ++
Sbjct: 370 LVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQN 429
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
V PN TY T++DG K G + Y + L+N + +++
Sbjct: 430 VVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 489
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIG 247
L ++M+S+G+ D H+ YT+ ID +K G A+ +
Sbjct: 490 GLVKDMVSKGVTLD------------------HINYTSLIDVFFKGGDEEAALSWAEEMQ 531
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
+ + + N LI GL K G++ W + M+ G+ PD+ T+NIM++ K+G
Sbjct: 532 EKEMPWDVVSYNVLISGLLKFGKVGADWA--YKGMREKGIEPDIATFNIMMNSQRKQGDF 589
Query: 308 QKANGLLLDMEETGLEPN 325
+ L M+ G++P+
Sbjct: 590 EGILKLWDKMKSCGIKPS 607
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 156/363 (42%), Gaps = 40/363 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVIT 60
GR G L + P++ +NSLI G + + L + C P+V
Sbjct: 72 GRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFA 131
Query: 61 FNTL--ALVALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
N L +L + ++ + D VT +I GLC+ G M+ G
Sbjct: 132 LNVLIHSLCKVGQLSFAISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQFLSEMVKIG 191
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------ 161
+ PD V+ N + D K G A L++ + + ++ +T ++ + A
Sbjct: 192 ILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSYYNLHAIEEAYRDMV 251
Query: 162 -KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
G DV +++ +IN CKD V + L REM G+ + TY TL
Sbjct: 252 MSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYR 311
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M + +P D VYT + GL+K G + EA K F + V + T L+
Sbjct: 312 HALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALV 371
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DGLCK G L A I +++ + P+VVTY+ MI+G+ K+G ++A L+ ME+ +
Sbjct: 372 DGLCKAGDLSSAEFIITQMLEK-SVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNV 430
Query: 323 EPN 325
PN
Sbjct: 431 VPN 433
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 140/336 (41%), Gaps = 53/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++V++N LI GL G++ A +K + +P++ TFN + +N + + G+
Sbjct: 538 DVVSYNVLISGLLKFGKV-GADWAYKGMREKGIEPDIATFN----IMMNSQRKQGDFEGI 592
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ D M G++P ++ N++ L + GKM+EA +L+ M+
Sbjct: 593 LKLWDK---------------MKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFM 637
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+++PN TY +D + S G + YN LI CK A
Sbjct: 638 EIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKA 697
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +M + G D T+N L M + P+ Y T I G
Sbjct: 698 AMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRG 757
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G + E K S + + T N LI G KIG K + I+ ++ + GL P
Sbjct: 758 LSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIAD-GLVP 816
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN++I F K G+ +A L+ +M + + PN
Sbjct: 817 KTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPN 852
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 156/405 (38%), Gaps = 86/405 (21%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
+S F++ + S F PN+VT++S+I G +G + EA L +K+ PN T+ T
Sbjct: 381 SSAEFIITQMLEKSVF-PNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGT 439
Query: 64 L---------ALVALNLFEEM----VNEFGVICKPDVVTCTNI-----IDGLCKDGFMMD 105
+ VA + +EM V E I V I + GL KD M+
Sbjct: 440 VIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKD--MVS 497
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
+G+ D + + D K G E A E M ++++ + +YN L+ G
Sbjct: 498 KGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQEKEMPWDVVSYNVLISGLLKFGKVGA 557
Query: 159 -WWSKGCRH-----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
W KG R D+ ++NI++N K + E + L +M S GI+ N +
Sbjct: 558 DWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGM 617
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M + P+ Y ++D K+ K + ++ L+
Sbjct: 618 LCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLS 677
Query: 255 IETCNCLIDGLCKIGRLKIAWDIF----------------------------------HM 280
+ N LI LCK+G + A + +
Sbjct: 678 RQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYS 737
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+M G++P+V TYN +I G G ++ L +M+ G+ P+
Sbjct: 738 MMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPD 782
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 147/353 (41%), Gaps = 64/353 (18%)
Query: 7 GFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G + L + SC P+++ N ++ LC +G++ EA + ++ PN+ T+
Sbjct: 591 GILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFL 650
Query: 66 LV--------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQG 107
+ A+ E + +G+ V +I LCK G M +G
Sbjct: 651 DMSSKHKRADAIFKTHETLLSYGIKLSRQVYN--TLIATLCKLGMTRKAAMVMEDMEARG 708
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------- 158
PD VT N + + +A +M++ ++PN TYNT++ G +
Sbjct: 709 FVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVE 768
Query: 159 -WWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
W S +G R D ++YN LI+G K N ++++++ EM+++G+ +TYN L
Sbjct: 769 KWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVL---- 824
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GRLK 272
I K G +L+A ++ +G + T +I GLCK+ +
Sbjct: 825 -------------ISEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGLCKLCTHPE 871
Query: 273 IAWDIFHM-LMQNPGLTPDVVT------YNIMIH----GFCKEGQHQKANGLL 314
+ W+ M L + GL +++ YN I+ F K G A L
Sbjct: 872 VEWNKKAMYLAEAKGLLKEMIEEKGYIPYNQTIYWISAAFSKPGMKVDAERFL 924
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 149/326 (45%), Gaps = 61/326 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F PN+V +N+LI G C G + A ++F+ ++ C PNV T+ L A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF MV E G+ +P+VVT T +I G C +G M G+ P+ T +V+
Sbjct: 268 VLFSRMV-EAGL--EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D L K K+EEA L ++++ V N Y +L+DG C
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL---------------------C 363
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K ++ A L ++M+SEG PD+H Y++ IDGL + + +A
Sbjct: 364 KTGKIDAADELMQKMISEGF-----------------VPDAHSYSSLIDGLCRQKKLSQA 406
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + T +ID L + + IF ++ G+ PD+VTY + +
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIAT-GINPDIVTYTVFVR 465
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
+C+EG+ + A +++ M + G+ PN
Sbjct: 466 SYCEEGRMEDAESMIVQMVDRGVFPN 491
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 139/349 (39%), Gaps = 56/349 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L +L + P+ + S + G C G + A R+F + + C T+ L L+
Sbjct: 95 LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154
Query: 69 LNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
+ E + F C PD ++ GLC+ G M G P++V
Sbjct: 155 AGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D G+ME A + E M + N C+ N V +Y L
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGM-----DGNRCSPN----------------VRTYTEL 253
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
I+G CK VE A+ L M+ G+ + TY L M N +
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ ++ ID L K V EA ++ + LIDGLCK G++ A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ G PD +Y+ +I G C++ + +A +L DM E G++ +
Sbjct: 374 LMQKMISE-GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 165/379 (43%), Gaps = 65/379 (17%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+ LG ++ N V + SLI GLC G+I A L +K+ P+ ++++L
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL 397
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
L L E + E G+ P VT T IID L ++ M+ G+ P
Sbjct: 398 CRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGINP 455
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D+VT V + ++G+ME+A ++ M+ R V PN TYNTL+ G+A
Sbjct: 456 DIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTF 515
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR-------EMLSEGI---------- 199
KG + + SY +L+ K + +++V + + ++L E I
Sbjct: 516 EVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAAD 575
Query: 200 -------------RADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
R + + + M N+ P VYT+ ID + + +A+ + ++
Sbjct: 576 IYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSM 635
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
+ +E+ +I LC+ G + A ++F L+ D + + I+I+G ++G
Sbjct: 636 TKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKES-NYDEIVWKILIYGLLQKGS 694
Query: 307 HQKANGLLLDMEETGLEPN 325
+ + LL M+E G +P+
Sbjct: 695 VAEFSSLLSVMKEHGYQPS 713
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------------ 208
S+ ++ +Y LIN YC ++ A +L G+ D+ Y +
Sbjct: 65 SRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLT 124
Query: 209 ------LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ M + + YT + GL G V EAM VF + C ++
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMV 184
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ GR + A + M N G P++V YN +I G+C G+ + A + M+
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSN-GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRC 243
Query: 323 EPN 325
PN
Sbjct: 244 SPN 246
>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 159/348 (45%), Gaps = 50/348 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ + P+ +FNS++ +C G++ A + + F C+P+VI++N+L
Sbjct: 43 FLAYLVSRGYAPHRSSFNSVVSFVCKLGQVKFAVDIVHSMPRFGCEPDVISYNSLIDGHC 102
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQGM-----RPD 111
A + E + +G CKPD+V+ + +G K D + G+ P+
Sbjct: 103 RNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEVFVYMGVMLKCCSPN 162
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWS 161
VVT + D K G+++ A M + + PN T+ L+DG+ + +
Sbjct: 163 VVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYE 222
Query: 162 KGCR----HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+ R +V +Y LI+G+CK ++ A + ML + V
Sbjct: 223 EMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLED-----------------RVE 265
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+S VYTT I+G ++ G AMK + + N L I +I GLC IG+LK A +I
Sbjct: 266 PNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEI 325
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ L PD++ + M++ + K G+ + A + + E G EP+
Sbjct: 326 VED-MEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD 372
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 154/355 (43%), Gaps = 56/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTL--ALVALNLFEEM 75
P+++++NSLI G C G I A + + L F C P++++FNTL + + +E+
Sbjct: 89 PDVISYNSLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNGFSKMKMLDEV 148
Query: 76 VNEFGVI---CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
GV+ C P+VVT + ID CK G M + P+VVT + D
Sbjct: 149 FVYMGVMLKCCSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDGY 208
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------DV 168
K G +E L E M + ++ N TY L+DGF + R +
Sbjct: 209 CKAGDLEVVVSLYEEMRRVRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRVEPNS 268
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
Y +ING+ + + ++A+ +ML++G+R D T Y +
Sbjct: 269 LVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATEIVED 328
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++ PD ++TT ++ +K+G + A+ ++ + + + +IDG+ K G+
Sbjct: 329 MEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQ 388
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A F N V Y ++I CKE + L + E GL P+
Sbjct: 389 LHEAISYFCTEKAND------VMYTVLIDALCKEEDFIEVERLFSKISEAGLVPD 437
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 172/396 (43%), Gaps = 86/396 (21%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-- 65
FV +G +++ C +PN+VT+++ I C G + A + F + PNV+TF L
Sbjct: 149 FVYMG-VMLKCCSPNVVTYSTWIDMFCKSGELKLALKSFNCMKRDALFPNVVTFTCLIDG 207
Query: 66 -------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------------- 101
V ++L+EEM V +VVT T +IDG CK G
Sbjct: 208 YCKAGDLEVVVSLYEEMRR---VRMSLNVVTYTALIDGFCKKGEMQRAGGMYLRMLEDRV 264
Query: 102 ----------------------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
M++QGMR D+ V+ L GK++EA
Sbjct: 265 EPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGIGKLKEATE 324
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
++E M + D+ P+ + T+M+ + +G DV + + +I+G
Sbjct: 325 IVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384
Query: 180 KDRNVEDAVS-LCREMLSEGI----------RADATTYNTLFMAINN--VPPDSHVYTTY 226
K+ + +A+S C E ++ + D LF I+ + PD +YT++
Sbjct: 385 KNGQLHEAISYFCTEKANDVMYTVLIDALCKEEDFIEVERLFSKISEAGLVPDKFMYTSW 444
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL K G +++A K+ + + L + LI GL G + A +F ++++ G
Sbjct: 445 IAGLCKQGNLVDAFKLKTKMVQEGLELDLFAYTTLIYGLTSKGLMVEARQVFDEMLRS-G 503
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
+ PD ++++I + KEG A+ LLLDM+ GL
Sbjct: 504 VCPDSAVFDLLIRAYEKEGNMTTASDLLLDMQTRGL 539
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 46/268 (17%)
Query: 85 PDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD VTC I L +++ +G P + N + + K G+++ A +
Sbjct: 19 PDPVTCNKHIHQLINSNCGALSLKFLAYLVSRGYAPHRSSFNSVVSFVCKLGQVKFAVDI 78
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF-----------------AWWSKGCRHDVYSYNILING 177
+ M + P+ +YN+L+DG A + C+ D+ S+N L NG
Sbjct: 79 VHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSFNTLFNG 138
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
+ K +ML E + + + + P+ Y+T+ID K+G +
Sbjct: 139 FSK-----------MKMLDE-------VFVYMGVMLKCCSPNVVTYSTWIDMFCKSGELK 180
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A+K F+ + + T CLIDG CK G L++ ++ M+ ++ +VVTY +
Sbjct: 181 LALKSFNCMKRDALFPNVVTFTCLIDGYCKAGDLEVVVSLYEE-MRRVRMSLNVVTYTAL 239
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I GFCK+G+ Q+A G+ L M E +EPN
Sbjct: 240 IDGFCKKGEMQRAGGMYLRMLEDRVEPN 267
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVPPDSHVYTTYIDGLYKNGFV 236
K N+ D V+ C + + + I ++ + F+A P + + + + K G V
Sbjct: 14 KSSNLPDPVT-CNKHIHQLINSNCGALSLKFLAYLVSRGYAPHRSSFNSVVSFVCKLGQV 72
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT--PDVVTY 294
A+ + ++ C + + N LIDG C+ G ++ A + L + G T PD+V++
Sbjct: 73 KFAVDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSACLVLESLRASYGFTCKPDIVSF 132
Query: 295 NIMIHGFCK 303
N + +GF K
Sbjct: 133 NTLFNGFSK 141
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 34/247 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F++ +++ TPN+VT+ +L GLC +G + A L ++ + N+ T
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497
Query: 61 FNTLA---LVALNLFEEM-----VNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N+L A NL + M ++E G+ KPDV T T II LC+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGL--KPDVYTYTTIIGALCQSKELDRAHSLLQE 555
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G++P +VT NV+ + G++E LLE M++++++PNT TYN+LM +
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+ + +YNILI G+CK RN+++A+ EM+ +G R A++YN
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675
Query: 209 LFMAINN 215
L +N
Sbjct: 676 LIRLLNK 682
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 55/335 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N ++N L+K LCT GRI +A +LF ++ P+V+T+ + G
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMV-------------HGY 295
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++ T ++ + G ++ V+ L L +G++ +A ++E M+
Sbjct: 296 CTLSELETAIKLLSEMAARGLELNPVAYTSVIAL------LCDEGQVSDAVRVVEDMVMH 349
Query: 142 DVNPNTCTYNTLMDGFA----------WW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
V + + T+M GF W+ +G D +Y LING C+ +++A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +EM +G+ DA TY L M V P+ YT DG
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G V A ++ + + L I T N LI+GLCK G L+ A + M GL P
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM-IDMDEAGLKP 528
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
DV TY +I C+ + +A+ LL +M + G++P
Sbjct: 529 DVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 148/337 (43%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLF 72
N V + S+I LC EG++ +A R+ + + + + F T+ A N F
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWF 378
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
+EM + G+ D VT T +I+GLC+ G M D+G+ D VT V+ D
Sbjct: 379 DEM-QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY 435
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDV 168
K GKM EA + M+Q+ V PN TY L DG SKG ++
Sbjct: 436 CKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNI 495
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
++YN LING CK N+E A+ +M G++ PD + YTT I
Sbjct: 496 FTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK-----------------PDVYTYTTIIG 538
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
L ++ + A + + + TI T N L++G C GR++ + +++ +
Sbjct: 539 ALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK-NIH 597
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+ TYN ++ +C E + + M + PN
Sbjct: 598 PNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 238 EAMKVFSAIGNHKCVLTIETC--NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
EA+++F + TC N L+ LC GR+K A +F M +P PDVVTY
Sbjct: 240 EAVQLFQELPEKN------TCSYNILLKALCTAGRIKDAHQLFDE-MASP---PDVVTYG 289
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IM+HG+C + + A LL +M GLE N
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELN 319
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 34/247 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F++ +++ TPN+VT+ +L GLC +G + A L ++ + N+ T
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFT 497
Query: 61 FNTLA---LVALNLFEEM-----VNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+N+L A NL + M ++E G+ KPDV T T II LC+
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGL--KPDVYTYTTIIGALCQSKELDRAHSLLQE 555
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+D+G++P +VT NV+ + G++E LLE M++++++PNT TYN+LM +
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+ + +YNILI G+CK RN+++A+ EM+ +G R A++YN
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675
Query: 209 LFMAINN 215
L +N
Sbjct: 676 LIRLLNK 682
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 55/335 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N ++N L+K LCT GRI +A +LF ++ P+V+T+ + G
Sbjct: 252 NTCSYNILLKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMV-------------HGY 295
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
++ T ++ + G ++ V+ L L +G++ +A ++E M+
Sbjct: 296 CTLSELETAIKLLSEMAARGLELNPVAYTSVIAL------LCDEGQVSDAVRVVEDMVMH 349
Query: 142 DVNPNTCTYNTLMDGFA----------WW----SKGCRHDVYSYNILINGYCKDRNVEDA 187
V + + T+M GF W+ +G D +Y LING C+ +++A
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +EM +G+ DA TY L M V P+ YT DG
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDG 469
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L K G V A ++ + + L I T N LI+GLCK G L+ A + M GL P
Sbjct: 470 LCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTM-IDMDEAGLKP 528
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
DV TY +I C+ + +A+ LL +M + G++P
Sbjct: 529 DVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 151/349 (43%), Gaps = 54/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
LL + N V + S+I LC EG++ +A R+ + + + + F T+
Sbjct: 307 LLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFC 366
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A N F+EM + G+ D VT T +I+GLC+ G M D+G+
Sbjct: 367 RKGDLAAARNWFDEM-QKRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV 423
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
D VT V+ D K GKM EA + M+Q+ V PN TY L DG
Sbjct: 424 DAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELL 483
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SKG ++++YN LING CK N+E A+ +M G++
Sbjct: 484 HEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLK---------------- 527
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD + YTT I L ++ + A + + + TI T N L++G C GR++
Sbjct: 528 -PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKR 586
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +++ + P+ TYN ++ +C E + + M + PN
Sbjct: 587 LLEWMLEK-NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPN 634
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 238 EAMKVFSAIGNHKCVLTIETC--NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
EA+++F + TC N L+ LC GR+K A +F M +P PDVVTY
Sbjct: 240 EAVQLFQELPEKN------TCSYNILLKALCTAGRIKDAHQLFDE-MASP---PDVVTYG 289
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IM+HG+C + + A LL +M GLE N
Sbjct: 290 IMVHGYCTLSELETAIKLLSEMAARGLELN 319
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 150/330 (45%), Gaps = 60/330 (18%)
Query: 15 LMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++ C P ++ FN L+ C EG I A +F + + P+V++FNTL
Sbjct: 127 ILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ KM++AN
Sbjct: 178 --MNGY--------IRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANG 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL I G+CK+R V+ A+ + ++
Sbjct: 228 LFDEMLDKGLVPNGVTFTTL---------------------IAGHCKNRRVDLAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ A + + L LI GLC+ GR A + ++ + GL PD TY
Sbjct: 327 LETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREML-SVGLKPDTGTYT 385
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+ FCK+G + LL +M+ G P+
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGHVPS 415
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + ++D G + N++ K+G + A + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+DA L EML +G+ + T+ TL M ++ PD Y T
Sbjct: 223 DDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTL 282
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL K G + +A + + T LIDG CK G L+ A++ ++Q
Sbjct: 283 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQE-N 341
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ D V Y +I G C+EG++ A +L +M GL+P+
Sbjct: 342 IRLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPD 380
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 43/215 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L PN VTF +LI G C R+ A ++K++ P++IT+NTL
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLI---- 283
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+G+ K D+ ++ID M +G++PD +T + D K+G +E
Sbjct: 284 ---------YGLCKKGDLKQAHDLIDE------MSMKGLKPDKITYTTLIDGCCKEGDLE 328
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
A + MIQ ++ + Y L I+G C++ DA
Sbjct: 329 TAFEHRKRMIQENIRLDDVAYTAL---------------------ISGLCQEGRYLDAEK 367
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ REMLS G++ D TY M IN V+T
Sbjct: 368 VLREMLSVGLKPDTGTYT---MIINEFCKKGDVWT 399
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVY 223
RH + SY +I+ C + + +A SL R ++S + A+ + + D +V+
Sbjct: 10 RHTLDSYCTMIHLLCTHQMLSEAKSLIRVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + ++
Sbjct: 70 SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL- 128
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G + +NI++H FCKEG + A + + + GL P+
Sbjct: 129 DCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPS 170
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 44/187 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
++L +P+++T+N+LI GLC +G + +A L ++++ P+ IT+ TL
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL-------- 317
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
IDG CK+G M+ + +R D V + L
Sbjct: 318 ---------------------IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGL 356
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
++G+ +A +L M+ + P+T TY +++ F KG DV++ + L+ +D
Sbjct: 357 CQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFC--KKG---DVWTGSKLLKEMQRDG 411
Query: 183 NVEDAVS 189
+V VS
Sbjct: 412 HVPSVVS 418
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 172/373 (46%), Gaps = 52/373 (13%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + GR+L + P++ ++N+LI G EG + +A LF K+ PNV+T++
Sbjct: 204 RPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYS 263
Query: 63 TL-----ALVALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMDQGMR------- 109
+L ++ E ++ + G +P+ +T +I G G M + +R
Sbjct: 264 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSG-MWKESVRVFKEMSS 322
Query: 110 ----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS---- 161
PDV N L K G+++EA + + M+ + P+ +Y L+ G+A
Sbjct: 323 SLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAG 382
Query: 162 ----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
+G D + +N LIN Y + ++ ++ + +M +G+ D T++T+
Sbjct: 383 MDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVIS 442
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
A VPPD+ VY+ I G +++A ++ S + +
Sbjct: 443 AFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPP 502
Query: 254 T-IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
I+ +I+ LCK GR+ D+ +++ G P+++T+N ++ G+C G ++A G
Sbjct: 503 PCIKFFTSIINNLCKEGRVAEGKDVVDLIIHT-GQRPNLITFNSLVDGYCLVGNMKEAVG 561
Query: 313 LLLDMEETGLEPN 325
LL ME G+EP+
Sbjct: 562 LLDSMESVGVEPD 574
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 162/354 (45%), Gaps = 50/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P+ FN+LI G + ++ +F+ + +P++ITF+T+ A L ++ + +
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 456
Query: 79 FGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTL-NVMTDNLS 123
F + PD + +I G C M+ +G+ P + + +NL
Sbjct: 457 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 516
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K+G++ E +++++I PN T+N+L+DG+ + S G D+Y
Sbjct: 517 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIY 576
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----LFMAINNVPPDS----- 220
+YN L++GYCK ++DA++L R+ML + + + +YN LF A +
Sbjct: 577 TYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEM 636
Query: 221 ---------HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
H Y T + GL +N EA + + + I T N +I + K+GR
Sbjct: 637 IESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRR 696
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F + GL P ++TY +MI KE + A+ L ME++ P+
Sbjct: 697 QEAKELFAAI-STYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPD 749
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 63/268 (23%)
Query: 42 AARLFKKLNVFCCD---PNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC 98
A LFK+++ C P + T+N L +N + +PD+ GL
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNIL-----------INCYRRARRPDL--------GLP 210
Query: 99 KDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
G ++ G+ PDV + N + D SK+G++++A+ L M ++ + PN TY++
Sbjct: 211 VFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSS------ 264
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
LING CK + ++ A + R+M+ G+R + TYN L
Sbjct: 265 ---------------LINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLI-------- 301
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
H Y+T G++K E+++VF + + V + CN + LCK GR+K A DIF
Sbjct: 302 --HGYST--SGMWK-----ESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIF 352
Query: 279 -HMLMQNPGLTPDVVTYNIMIHGFCKEG 305
M+++ P PDV++Y ++HG+ G
Sbjct: 353 DSMVLKGP--KPDVISYGALLHGYATAG 378
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 132/337 (39%), Gaps = 86/337 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + G ++ I+ + PN++TFNSL+ G C G + EA L + +P++ T+
Sbjct: 519 GRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 578
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL +DG C
Sbjct: 579 NTL-----------------------------VDGYC----------------------- 586
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
K G++++A L M+ + V + +YN ++ G + G
Sbjct: 587 --KHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVS 644
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+++Y ++ G C++ ++A L ++ S ++ D T+N + I
Sbjct: 645 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIV-----------------I 687
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
++K G EA ++F+AI + V TI T +I L K + A ++F M+
Sbjct: 688 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSS-MEKSSC 746
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
TPD N +I +G+ KA L +++ G+ P
Sbjct: 747 TPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP 783
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 185 EDAVSLCREML-SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+DA L E+L A A N L A+ PP + +E K
Sbjct: 125 DDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDV-------PALAVELFKRM 177
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ TI T N LI+ + R + +F L++ GL PDV +YN +I GF K
Sbjct: 178 DRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRT-GLGPDVFSYNALIDGFSK 236
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
EG+ KA+ L MEE G+ PN
Sbjct: 237 EGEVDKAHDLFYKMEEQGIMPN 258
>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 395
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 159/361 (44%), Gaps = 52/361 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G V+L R L S P++VT LI C E + +A +L ++ C PNV+T+N L
Sbjct: 15 GVVVLDRQLQSKCYPDVVTCTELIDAACKESGVGQAMKLLIEMMSKGCKPNVVTYNVLIK 74
Query: 67 VALN--LFEEMV----NEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
N +E + N + DV++ T I+ LC G MD G P
Sbjct: 75 GICNEGRLDEAIRFLKNLPSYSIQLDVISYTIILHSLCSGGKWMDAMKLLASMLRNGFSP 134
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+VVT N + + L G + +A +LE+M + PN +YN L++GF
Sbjct: 135 NVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPLIEGFCNEKSADRTIEYS 194
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY---------- 206
S+GC D +YNIL+ CKD V+DA+ + ++ G TY
Sbjct: 195 RIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQLSLNGCSPLLITYIVIDGLLKVG 254
Query: 207 -----NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
LF I + P+ +T+ GL + G KV AI N + + + +
Sbjct: 255 KTVHVVVLFEEIKALKPNLITFTSVEGGLSRKG------KVHEAIQNFRFLEGLGIRXSI 308
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I GLCK + A D +++N G P TYNI++ G EG ++A+ L ++ G
Sbjct: 309 IMGLCKTQQTSRAIDFLAYMVEN-GCKPTEATYNILVKGITCEGLPEEASKLWSELXSKG 367
Query: 322 L 322
L
Sbjct: 368 L 368
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 102/260 (39%), Gaps = 65/260 (25%)
Query: 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
C PDVVTCT +ID CK+ G + L+E+M
Sbjct: 27 CYPDVVTCTELIDAACKE------------------------SGVGQAMKLLIEMM---- 58
Query: 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
SKGC+ +V +YN+LI G C + +++A+ + + S I+ D
Sbjct: 59 ------------------SKGCKPNVVTYNVLIKGICNEGRLDEAIRFLKNLPSYSIQLD 100
Query: 203 ATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+Y + ++ N P+ + T I+ L G + +A+ V
Sbjct: 101 VISYTIILHSLCSGGKWMDAMKLLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLE 160
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ H C + N LI+G C + + +M + G D VTYNI++ CK+
Sbjct: 161 MMPKHGCTPNFRSYNPLIEGFCNEKSADRTIE-YSRIMVSRGCYLDTVTYNILLTALCKD 219
Query: 305 GQHQKANGLLLDMEETGLEP 324
G+ A +L + G P
Sbjct: 220 GKVDDAIEILNQLSLNGCSP 239
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 116/270 (42%), Gaps = 36/270 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL +L + F+PN+VTFN+LI LC +G + +A + + + C PN ++
Sbjct: 115 GKWMDAMKLLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSY 174
Query: 62 NTLALVALN-LFEEMVNEFGVI-----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
N L N + E+ I C D VT ++ LCKDG + D
Sbjct: 175 NPLIEGFCNEKSADRTIEYSRIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQLSL 234
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G P ++T ++ D L K GK L E + + + PN T+ ++ G + KG
Sbjct: 235 NGCSPLLITY-IVIDGLLKVGKTVHVVVLFEEI--KALKPNLITFTSVEGGLS--RKGKV 289
Query: 166 HD-VYSYNIL---------INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
H+ + ++ L I G CK + A+ M+ G + TYN L I
Sbjct: 290 HEAIQNFRFLEGLGIRXSIIMGLCKTQQTSRAIDFLAYMVENGCKPTEATYNILVKGITC 349
Query: 214 NNVPPDSHVYTTYI--DGLYKNGFVLEAMK 241
+P ++ + + GL K V E MK
Sbjct: 350 EGLPEEASKLWSELXSKGLVKKSLV-EKMK 378
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
C DV + LI+ CK+ V A+ L EM+S+G + + TYN L
Sbjct: 27 CYPDVVTCTELIDAACKESGVGQAMKLLIEMMSKGCKPNVVTYNVL-------------- 72
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
I G+ G + EA++ + ++ L + + ++ LC G+ A + +++
Sbjct: 73 ---IKGICNEGRLDEAIRFLKNLPSYSIQLDVISYTIILHSLCSGGKWMDAMKLLASMLR 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N G +P+VVT+N +I+ C +G KA +L M + G PN
Sbjct: 130 N-GFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPN 170
>gi|242034189|ref|XP_002464489.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
gi|241918343|gb|EER91487.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
Length = 585
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 165/352 (46%), Gaps = 48/352 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L +++S P+ +T N LI LC EG++ A ++ + + C P+ ITF
Sbjct: 172 GKTNKARHVLEVMVLSGGVPDTITCNMLIARLCCEGQLSSAMKVLEDMRFTGCSPSGITF 231
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFMMD---------- 105
NTL + + ++++ ++ + K P +T T ++D +CK M
Sbjct: 232 NTLIRCMCSHHMYDRAISFWKEQLKLGWPPYEMTSTLLVDLICKKCGPMRALEVLDELGL 291
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY----NTLMDGFAWWS 161
+G +PDVV+ N + K G ++ A +L + + PN TY ++L D W
Sbjct: 292 EGCQPDVVSYNTLISVSCKAGCLKNAKLILTHLSAEGLEPNGTTYCILLHSLCDKRRWSE 351
Query: 162 KG----------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G + DV +YNI IN +C+ ++ A+ + M++E D TYNTL
Sbjct: 352 VGDLLAHMKQANHKPDVTAYNIFINYFCRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLN 411
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
AI+ K G V EA+ +F +I + C + T N LID L K G +
Sbjct: 412 AIS-----------------KRGMVEEALGIFHSIRENGCQVVRITYNTLIDALAKKGEV 454
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A +F M G++PD VTY ++ GFCK+ ++A LL M G E
Sbjct: 455 INAMTLFDE-MTVDGISPDDVTYGSLVMGFCKKNMAKEALELLNQMLALGFE 505
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 134/335 (40%), Gaps = 81/335 (24%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNV 117
A + +EMV V PD C +I GL + G M+ G PD +T N+
Sbjct: 142 ACRVIDEMVLHGQV---PDSKCCVRLIRGLVRTGKTNKARHVLEVMVLSGGVPDTITCNM 198
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWSK----- 162
+ L +G++ A +LE M +P+ T+NTL+ ++W +
Sbjct: 199 LIARLCCEGQLSSAMKVLEDMRFTGCSPSGITFNTLIRCMCSHHMYDRAISFWKEQLKLG 258
Query: 163 ----------------------------------GCRHDVYSYNILINGYCKDRNVEDAV 188
GC+ DV SYN LI+ CK +++A
Sbjct: 259 WPPYEMTSTLLVDLICKKCGPMRALEVLDELGLEGCQPDVVSYNTLISVSCKAGCLKNAK 318
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
+ + +EG+ + TTY L M N PD Y +I+
Sbjct: 319 LILTHLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNIFINYF 378
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G++ +A+ V + N KC I T N L++ + K G ++ A IFH + +N G
Sbjct: 379 CRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLNAISKRGMVEEALGIFHSIREN-GCQVV 437
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+TYN +I K+G+ A L +M G+ P+
Sbjct: 438 RITYNTLIDALAKKGEVINAMTLFDEMTVDGISPD 472
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 48/267 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++N+LI C G + A + L+ +PN T+ L +L + E+ +
Sbjct: 296 PDVVSYNTLISVSCKAGCLKNAKLILTHLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDL 355
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ KPDV I+ C+ G+ M+++ PD+VT N + + +SK
Sbjct: 356 LAHMKQANHKPDVTAYNIFINYFCRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLNAISK 415
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
G +EEA + + + TYNTL+D A + G D +
Sbjct: 416 RGMVEEALGIFHSIRENGCQVVRITYNTLIDALAKKGEVINAMTLFDEMTVDGISPDDVT 475
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
Y L+ G+CK ++A+ L +ML+ G ATT++ + ++
Sbjct: 476 YGSLVMGFCKKNMAKEALELLNQMLALGFEVKATTFSMMIQSLCKGCNTEAAAEILRVMV 535
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEA 239
NV S Y + + + K+G V EA
Sbjct: 536 SRNVNHRSAFYLSIVTRVAKSGRVKEA 562
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 63/332 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V+++NTL
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTL--------- 164
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M+ G++PDV T +V+ + L K+ KM++AN
Sbjct: 165 --MNGY--------IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 214
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+DG +CK+ V+ A+ + ++
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDG---------------------HCKNGRVDLAMEIYKQ 253
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 254 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGD 313
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A + + L LI GLC+ GR + D ML M N GL PD T
Sbjct: 314 LDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR---SVDAEKMLREMLNVGLKPDSRT 370
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++I+ FCK+G K + LL +M+ G P+
Sbjct: 371 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 402
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + +++ G + N++ KDG + A + + +
Sbjct: 90 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 149
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ +YNTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 150 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 209
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+DA L EML +G+ + T+ TL M ++ PD Y T
Sbjct: 210 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL K G + +A + + + T LIDG CK G L A++ ++Q
Sbjct: 270 IYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQE-N 328
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ D V Y +I G C+EG+ A +L +M GL+P+
Sbjct: 329 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPD 367
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 82/312 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L +L S P++ T++ LI GLC E ++ +A LF ++ V PN +T
Sbjct: 171 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
F TL IDG CK+G M+ Q + P
Sbjct: 231 FTTL-----------------------------IDGHCKNGRVDLAMEIYKQMLSQSLSP 261
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D++T N + L K G +++A+ L++ M +++ P+ TY TL+D GC
Sbjct: 262 DLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLID-------GC------ 308
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
CK+ +++ A + M+ E IR D Y L I GL
Sbjct: 309 --------CKEGDLDSAFEHRKRMIQENIRLDEVAYTAL-----------------ISGL 343
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLT 288
+ G ++A K+ + N T +I+ CK G + W +L MQ G
Sbjct: 344 CQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDV---WKGSKLLKEMQRDGHV 400
Query: 289 PDVVTYNIMIHG 300
P VVTYN++++G
Sbjct: 401 PSVVTYNVLMNG 412
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP----PDSHVYT 224
+SY +I+ C + + +A SL + ++S + A+ +F AI D +V++
Sbjct: 1 HSYCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASA---VFAAIVETKGTQRSDLYVFS 57
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + +++
Sbjct: 58 GLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE- 116
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCK+G + A + + + GL P+
Sbjct: 117 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/359 (28%), Positives = 164/359 (45%), Gaps = 58/359 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + F PN+V +N+LI G C G + A +F++++V C PNV T+
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTY 250
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
L A+ LF MV+ G++ P+VVT T +I G C DG
Sbjct: 251 TELISGFCKSRKLDRAMMLFSRMVDA-GLV--PNVVTYTALIQGQCSDGQLDCAYRLLQS 307
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M + G+ P+ T +V+ D L K ++ EA LL +IQ+ + N Y +L+DG
Sbjct: 308 MENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGR 367
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G D ++Y+ LI+G C+ + + +A+ + +M+ +G++ TY
Sbjct: 368 FAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTI 427
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ D V DG K +L+ M + + I TI + C
Sbjct: 428 II--------DELVREVGADGSKK---ILDKM-IAAGIKPDVFTYTI-----FVRSYCHE 470
Query: 269 GRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR++ D HM+ M + G+ P++VTYN +I G+ G +A M G +PN
Sbjct: 471 GRME---DAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPN 526
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 56/349 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L +L + F P+ + S + G C G + A RLF + + C T+ L L
Sbjct: 95 LSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCG 154
Query: 69 LNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
+ E ++ F + C PD ++ GLC G M +G P+VV
Sbjct: 155 AGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVV 214
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D G +E A + E M DVN GC +V +Y L
Sbjct: 215 YNALIDGYCNVGDLELAVDVFERM---DVN------------------GCSPNVRTYTEL 253
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
I+G+CK R ++ A+ L M+ G+ + TY L M + +
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGL 313
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ + ID L K+ V EA + ++ + LIDGLCK GR A
Sbjct: 314 VPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADR 373
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L+ G PD TY+ +I G C++ + +A +L DM E G++P+
Sbjct: 374 LMQTLVSQ-GFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 159/389 (40%), Gaps = 69/389 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +LLG ++ N + + SLI GLC GR A RL + L P+ T++
Sbjct: 332 RVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYS 391
Query: 63 TL--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGF------MM 104
+L L L + + E GV +P VT T IID L + DG M+
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGV--QPSPVTYTIIIDELVREVGADGSKKILDKMI 449
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
G++PDV T + + +G+ME+A ++ M+ V PN TYN L+ G+A
Sbjct: 450 AAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTS 509
Query: 159 --------WWSKGCRHDVYSYNILINGYCKDRNV----EDAVS------------LCREM 194
+ GC+ + SY +L+ K + ++VS L EM
Sbjct: 510 QAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEM 569
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
+ + ++ YN M N+ P VYT+ I + +
Sbjct: 570 VKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKML 629
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+ ++ + +E+ +I LC+ G ++ A +F ++ + + + I
Sbjct: 630 TEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKE-YNYEEIAWRI 688
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G ++G + + LL MEE P+
Sbjct: 689 LIDGLLQKGYVAECSSLLSVMEEKNYRPS 717
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ L D ++ S+ ++ +Y LIN YC ++ + + LS +RA
Sbjct: 54 HRMLADMESFASRMPARNLRTYTTLINAYCLAGDLPAS----KRHLSSLLRA-------- 101
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PDSH YT+++ G + G + A ++F + CV T T L+ GLC G
Sbjct: 102 -----GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAG 156
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A +F MQ G PD Y M+HG C G+ ++A LL D G EPN
Sbjct: 157 MVREAMSVFAG-MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPN 211
>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
Length = 690
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 149/325 (45%), Gaps = 61/325 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALVAL--N 70
PN+VTF +LI G C G + A LFK + +P++I ++TL ++ +
Sbjct: 283 APNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHK 342
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
LF + +++ GV K DVV ++ ID K G M+ QG+ P+VVT ++
Sbjct: 343 LFSQALHK-GV--KLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIK 399
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L +DG++ EA + +++R + P+ TY++L+DGF CK
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGF---------------------CK 438
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
N+ +L +M+ G D Y L +DGL K G +L AM
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVL-----------------VDGLSKQGLMLHAM 481
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + L + N LIDG C++ R A +F LM G+ PDV T+ ++
Sbjct: 482 RFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR-LMGIYGIKPDVATFTTVMRV 540
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
EG+ ++A L M + GLEP+
Sbjct: 541 SIMEGRLEEALFLFFRMFKMGLEPD 565
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 127/326 (38%), Gaps = 71/326 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR F + G+IL P++VT++SLI G C G +
Sbjct: 405 GRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS-------------------- 444
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPD 111
L+E+M+ + PDVV ++DGL K G M+ Q +R +
Sbjct: 445 ------GFALYEDMIK---MGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLN 495
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT-----LMDG---------F 157
VV N + D + + +EA + +M + P+ T+ T +M+G F
Sbjct: 496 VVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFF 555
Query: 158 AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
+ G D +Y LI+ +CK + L M I AD N +
Sbjct: 556 RMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVV-------- 607
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
I L+K + +A K F+ + K I T N +I G C + RL A I
Sbjct: 608 ---------IHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERI 658
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCK 303
F +L P P+ VT I+IH CK
Sbjct: 659 FELLKVTP-FGPNTVTLTILIHVLCK 683
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 42/224 (18%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
+M++G R +V+ N + LS D ++E A+ LL +++ PN T+ TL
Sbjct: 243 VMERGFRVGIVSCNKVLKGLSVD-QIEVASRLLSLVLDCGPAPNVVTFCTL--------- 292
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
ING+CK ++ A L + M GI PD
Sbjct: 293 ------------INGFCKRGEMDRAFDLFKVMEQRGIE-----------------PDLIA 323
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HML 281
Y+T IDG +K G + K+FS + L + + ID K G L A ++ ML
Sbjct: 324 YSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRML 383
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Q G++P+VVTY I+I G C++G+ +A G+ + + G+EP+
Sbjct: 384 CQ--GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPS 425
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 12/107 (11%)
Query: 229 GLYKNGFVLEAM----KVFSAIGNHKCVLT------IETCNCLIDGLCKIGRLKIAWDIF 278
G+ +GFVL+A+ +V A+ H+ V+ I +CN ++ GL + ++++A +
Sbjct: 216 GVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGL-SVDQIEVASRLL 274
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + G P+VVT+ +I+GFCK G+ +A L ME+ G+EP+
Sbjct: 275 SLVL-DCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPD 320
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 54/358 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + PN V FN LI LC +G + A++L + + C PN +T+
Sbjct: 224 GRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTY 283
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N+L A++L MV C P+ +T ++DG K G +D
Sbjct: 284 NSLVHGLCLKGKLDKAMSLLNRMVAN---KCVPNDITFGTLVDGFVKHGRALDGVRVLVS 340
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G R + + + + L K+GK E L + M+++ PNT Y+ L+DG
Sbjct: 341 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 400
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + ++Y+ L+ GY + ++ A+ + +EM Y+
Sbjct: 401 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 460
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I+GL KNG + EA+ V+ + + L + + +I G C
Sbjct: 461 L-----------------INGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNA 503
Query: 269 GRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ +F ML NP L PDVVTYNI+++ FC + +A +L M + G +P+
Sbjct: 504 QLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPD 561
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 142/345 (41%), Gaps = 69/345 (20%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLN----VFCCDPNVITFNT-----LALVALNLFEE 74
++F SLI+ +L ++ VF +I F L AL+LF
Sbjct: 66 LSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHR 125
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG----MRPDVVTLNVMTD 120
M EF CK V + +++ + ++G ++D ++P+ ++ N++
Sbjct: 126 MGAEFH--CKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIK 183
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L + G +++A + M R+ C D Y+Y+ L++G C
Sbjct: 184 ALCRVGNVDQAVEVFRGMSDRN---------------------CVADGYTYSTLMHGLCN 222
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMA------------------INNVPPDSHV 222
+ +++AVSL EM EG + +N L A + P+
Sbjct: 223 EGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVT 282
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML- 281
Y + + GL G + +AM + + + +KCV T L+DG K GR A D +L
Sbjct: 283 YNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGR---ALDGVRVLV 339
Query: 282 -MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G + +Y+ +I G KEG+ + L +M E G +PN
Sbjct: 340 SLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPN 384
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 41/167 (24%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFK-------KLNVFCCDPNVITFNTLALV--ALNLFEE 74
V ++ LI GLC G++ EA ++K KL+V + F LV + LF +
Sbjct: 456 VCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQ 515
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT----LNVMTD 120
M+ + +PDVVT +++ C M+DQG PD +T L + D
Sbjct: 516 MLCHNPKL-QPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 574
Query: 121 NL--SKDGK--MEE-------------ANCLLEVMIQRDVNPNTCTY 150
N+ +DG+ ++E A+ ++EVM+Q+ + P T+
Sbjct: 575 NMDPPQDGREFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTW 621
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 149/326 (45%), Gaps = 61/326 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F PN+V +N+LI G C G + A ++F+ ++ C PNV T+ L A+
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF MV E G+ +P+VVT T +I G C +G M G+ P+ T +V+
Sbjct: 268 VLFSRMV-EAGL--EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
D L K K+EEA L ++++ V N Y +L+DG C
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL---------------------C 363
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K ++ A L ++M+SEG PD+H Y++ IDGL + + +A
Sbjct: 364 KTGKIDAADELMQKMISEGFV-----------------PDAHSYSSLIDGLCRQKKLSQA 406
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + T +ID L + + IF ++ G+ PD+VTY + +
Sbjct: 407 TLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIAT-GINPDIVTYTVFVR 465
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
+C+EG+ + A +++ M + G+ PN
Sbjct: 466 SYCEEGRMEDAESMIVQMVDRGVFPN 491
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 139/349 (39%), Gaps = 56/349 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVA 68
L +L + P+ + S + G C G + A R+F + + C T+ L L+
Sbjct: 95 LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154
Query: 69 LNLFEEMVNEF----GVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
+ E + F C PD ++ GLC+ G M G P++V
Sbjct: 155 AGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVV 214
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNIL 174
N + D G+ME A + E M + N C+ N V +Y L
Sbjct: 215 YNALIDGYCNAGEMEHALKVFEGM-----DGNRCSPN----------------VRTYTEL 253
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNV 216
I+G CK VE A+ L M+ G+ + TY L M N +
Sbjct: 254 IHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGL 313
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
P+ ++ ID L K V EA ++ + LIDGLCK G++ A +
Sbjct: 314 VPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE 373
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++ G PD +Y+ +I G C++ + +A +L DM E G++ +
Sbjct: 374 LMQKMISE-GFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 134/309 (43%), Gaps = 49/309 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---- 64
+ LG ++ N V + SLI GLC G+I A L +K+ P+ ++++L
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL 397
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
L L E + E G+ P VT T IID L ++ M+ G+ P
Sbjct: 398 CRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATGINP 455
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D+VT V + ++G+ME+A ++ M+ R V PN TYNTL+ G+A
Sbjct: 456 DIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA------------ 503
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-MAINNVPPDSHVYTTYIDG 229
N+ + V A S M+ +G + + +Y L + + D+ V
Sbjct: 504 -NLGL--------VSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSV------D 548
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
++K + + + I + L + +C I LC++ RL+ A F M MQN LTP
Sbjct: 549 IWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFF-MGMQNANLTP 607
Query: 290 DVVTYNIMI 298
Y +I
Sbjct: 608 SEDVYTSII 616
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT------------ 208
S+ ++ +Y LIN YC ++ A +L G+ D+ Y +
Sbjct: 65 SRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLT 124
Query: 209 ------LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+ M + + YT + GL G V EAM VF + C ++
Sbjct: 125 HACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMV 184
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ GR + A + M N G P++V YN +I G+C G+ + A + M+
Sbjct: 185 HGLCEAGRTEEAEVLLEEAMSN-GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRC 243
Query: 323 EPN 325
PN
Sbjct: 244 SPN 246
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 150/330 (45%), Gaps = 59/330 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V++FNTL
Sbjct: 127 ILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ KM++AN
Sbjct: 178 --MNGY--------IRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANE 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+DG +CK+ V+ A+ + ++
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDG---------------------HCKNGRVDLAMEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
+ A + + L LI GLC+ GR A + ++ + GL PD +TY
Sbjct: 327 LETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREML-SVGLKPDTITYT 385
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+ FCK+G + LL +M+ G P+
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGQMPS 415
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 42/246 (17%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + +++ G + N++ KDG + A + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML +G+ P+ +TT IDG KNG V AM+++
Sbjct: 223 DDANELFDEMLDKGL-----------------VPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + + T N LI GLC+ G LK A D+ M GL PD +TY +I G CKE
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDE-MSMKGLKPDKITYTTLIDGXCKE 324
Query: 305 GQHQKA 310
G + A
Sbjct: 325 GDLETA 330
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L PN VTF +LI G C GR+ A ++K++ P++IT+NTL
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI---- 283
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+G+ K D+ ++ID M +G++PD +T + D K+G +E
Sbjct: 284 ---------YGLCRKGDLKQARDLIDE------MSMKGLKPDKITYTTLIDGXCKEGDLE 328
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
A + MIQ ++ + Y LI+G C++ DA
Sbjct: 329 TAFEHRKRMIQENIQLDDVGYTA---------------------LISGLCQEGRYLDAEK 367
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
+ REMLS G++ D TY M IN V+T
Sbjct: 368 VLREMLSVGLKPDTITYT---MIINEFCKKGDVWT 399
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVY 223
RH + SY +I+ C + + +A SL + ++S + A+ + + D +V+
Sbjct: 10 RHTLDSYCTMIHLLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + +++
Sbjct: 70 SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCK+G + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPS 170
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++L +P+++T+N+LI GLC +G + +A L ++++ P+ IT+
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITY 314
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
TL A + M+ E + D V T +I GLC++G +D
Sbjct: 315 TTLIDGXCKEGDLETAFEHRKRMIQEN---IQLDDVGYTALISGLCQEGRYLDAEKVLRE 371
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
G++PD +T ++ + K G + + LL+ M QRD
Sbjct: 372 MLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEM-QRD 410
>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Cucumis sativus]
Length = 942
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 172/409 (42%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A ++ +++ P++ ++ ++ C EGR+ EA K++ CC+PNV+T+
Sbjct: 235 GEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTY 294
Query: 62 NTLALVALNLFE--------EMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
N+L ++L + +++E G+ + T T +I G CK G M
Sbjct: 295 NSLIDGYVSLGDVCGAKKVLALMSEKGI--PENSRTYTLLIKGYCKRGQMEQAEKLIGCM 352
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
M++ + D V+ G++++A + + M++ + NT N+L++G+
Sbjct: 353 MEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHV 412
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + D Y YN L++G+CK + A LC EM ++G+ TYNTL
Sbjct: 413 NKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTL 472
Query: 210 ------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M V P+ Y T +D +K G AM ++ +
Sbjct: 473 LKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGF 532
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG------ 305
+I N +I G CK+ +L A +IF + M+ G PD +TY +I G+CK G
Sbjct: 533 TKSITLYNTMICGFCKMEKLVQAQEIF-LKMKELGFPPDEITYRTLIDGYCKVGNLVEAL 591
Query: 306 -----------------------------QHQKANGLLLDMEETGLEPN 325
+ QK NGLL +M+ L PN
Sbjct: 592 KLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPN 640
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 163/356 (45%), Gaps = 59/356 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALN 70
F P+ +T+ +LI G C G ++EA +L + +N+L L LN
Sbjct: 567 FPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLN 626
Query: 71 -LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMT 119
L EM N P+VVT ++I G C G M +D+G+ P+++ + +
Sbjct: 627 GLLAEMKNRE---LSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIV 683
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNT---------------LMDGFAWWSKGC 164
+L + GK++EAN +L + D++P ++ ++D F +
Sbjct: 684 SSLYRHGKIDEANLILHQIA--DIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSI 741
Query: 165 R-HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP------ 217
+ YNI I G CK +N++D + ++L +G D TY +L A + V
Sbjct: 742 PISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAF 801
Query: 218 ------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
P+ VY I+GL K+G + A ++F+ + T+ T N LIDG
Sbjct: 802 CLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGY 861
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
CK GR A ++ M+ G+ P +TY+ +IHG EG+ +++ GLL +M + G
Sbjct: 862 CKGGRTTEALELKDK-MREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 139/332 (41%), Gaps = 50/332 (15%)
Query: 25 TFNSLIKGLCTEGRILEAARLFK-------KLNVFCCDPNVITFNTLALVALNLFEEMVN 77
+ LI CT GR+ +A R+ K+N C+ + + L V E +V+
Sbjct: 363 VYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVN-KAAEVLVS 421
Query: 78 EFGVICKPDVVTCTNIIDGLCKD-----GF-----MMDQGMRPDVVTLNVMTDNLSKDGK 127
KPD ++DG CK F M ++G+ VVT N + NL G
Sbjct: 422 MKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGH 481
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW---WSKGCRHDVYSYNI 173
+E A + +M +R V PN TY TL+D F W SKG + YN
Sbjct: 482 VEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNT 541
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKN 233
+I G+CK + A + +M G PPD Y T IDG K
Sbjct: 542 MICGFCKMEKLVQAQEIFLKMKELGF-----------------PPDEITYRTLIDGYCKV 584
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G ++EA+K+ + E N LI G+ + L+ + M+N L+P+VVT
Sbjct: 585 GNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAE-MKNRELSPNVVT 643
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y +I G+C +G KA M + G+ PN
Sbjct: 644 YGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPN 675
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 129/303 (42%), Gaps = 38/303 (12%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKP 85
F + C IL AR++K++ V+ + V+ N +A +++E+V+ +
Sbjct: 128 FRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNY--IASAVWDELVSVY-----R 180
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGK---MEEANCLLEVMIQRD 142
+ + D + K ++GM + + DN+ K G+ + N LL ++Q
Sbjct: 181 EFSFSPTVFDMILK--VFAEKGMTKFALCV---FDNMGKCGRVPSLRSCNSLLSNLVQ-- 233
Query: 143 VNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
N + L+ + G D++SY I++N YCK+ V++A + +EM +
Sbjct: 234 ---NGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPN 290
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
TYN+L IDG G V A KV + + T LI
Sbjct: 291 VVTYNSL-----------------IDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLI 333
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G CK G+++ A + +M+ L D Y ++IH +C G+ A + M + GL
Sbjct: 334 KGYCKRGQMEQAEKLIGCMMEK-NLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGL 392
Query: 323 EPN 325
+ N
Sbjct: 393 KMN 395
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 39/150 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + F L ++ + PN+V +N+LI GLC G + A RLF KL P V+T
Sbjct: 794 VGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVT 853
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+NTL IDG CK G M ++G+ P
Sbjct: 854 YNTL-----------------------------IDGYCKGGRTTEALELKDKMREEGICP 884
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
+T + + L +GK E++ LL M++
Sbjct: 885 SSITYSTLIHGLYMEGKSEQSVGLLNEMMK 914
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 44/201 (21%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV--FCCDPNVITFNTLALVA 68
G+ MS N + +N I GLC I + R+ L + FC P+ T+ +L
Sbjct: 734 FGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFC--PDNYTYCSL---- 787
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
++ + K + + C M++ G+ P++V N + + L K G +
Sbjct: 788 -------IHACSAVGK--------VNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNL 832
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
+ A L + ++ ++P TYNTL+D GYCK +A+
Sbjct: 833 DRARRLFNKLARKGLSPTVVTYNTLID---------------------GYCKGGRTTEAL 871
Query: 189 SLCREMLSEGIRADATTYNTL 209
L +M EGI + TY+TL
Sbjct: 872 ELKDKMREEGICPSSITYSTL 892
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/409 (20%), Positives = 140/409 (34%), Gaps = 88/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + +L N V NSLI G C G + +AA + + + P+ +
Sbjct: 375 GRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGY 434
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL + A L +EM N+ GV VVT ++ L G
Sbjct: 435 NTLLDGFCKQEDFIKAFKLCDEMHNK-GV--NFTVVTYNTLLKNLFHVGHVEHALHIWNL 491
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G+ P+ VT + D K G + A + + + + + YNT++ GF K
Sbjct: 492 MHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEK 551
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G D +Y LI+GYCK N+ +A+ L +GI + YN+
Sbjct: 552 LVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNS 611
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L + + P+ Y + I G G + +A + + +
Sbjct: 612 LITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKG 671
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV------------------- 291
I + ++ L + G++ A I H + +
Sbjct: 672 IAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIV 731
Query: 292 ---------------VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ YNI I G CK +L D+ G P+
Sbjct: 732 DSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPD 780
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 39/158 (24%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L +L+ F P+ T+ SLI G++ EA FC
Sbjct: 768 ILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEA---------FC---------------- 802
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L ++M+N G++ P++V +I+GLCK G + +G+ P VVT N +
Sbjct: 803 -LRDDMINA-GLV--PNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLI 858
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
D K G+ EA L + M + + P++ TY+TL+ G
Sbjct: 859 DGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGL 896
>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g31840
gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 840
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 149/325 (45%), Gaps = 61/325 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALVAL--N 70
PN+VTF +LI G C G + A LFK + +P++I ++TL ++ +
Sbjct: 283 APNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHK 342
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTD 120
LF + +++ GV K DVV ++ ID K G M+ QG+ P+VVT ++
Sbjct: 343 LFSQALHK-GV--KLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIK 399
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
L +DG++ EA + +++R + P+ TY++L+DGF CK
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGF---------------------CK 438
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
N+ +L +M+ G D Y L +DGL K G +L AM
Sbjct: 439 CGNLRSGFALYEDMIKMGYPPDVVIYGVL-----------------VDGLSKQGLMLHAM 481
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + L + N LIDG C++ R A +F LM G+ PDV T+ ++
Sbjct: 482 RFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFR-LMGIYGIKPDVATFTTVMRV 540
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
EG+ ++A L M + GLEP+
Sbjct: 541 SIMEGRLEEALFLFFRMFKMGLEPD 565
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 54/337 (16%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNLF 72
N+V FNSLI G C R EA ++F+ + ++ P+V TF T+ V AL LF
Sbjct: 495 NVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLF 554
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
M F + +PD + +ID CK M + D+ NV+ L
Sbjct: 555 FRM---FKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLL 611
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD--------------V 168
K ++E+A+ +I+ + P+ TYNT++ G+ + +
Sbjct: 612 FKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNT 671
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYID 228
+ ILI+ CK+ +++ A+ + M +G + +A TY L +D
Sbjct: 672 VTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL-----------------MD 714
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
K+ + + K+F + +I + + +IDGLCK GR+ A +IFH + + L
Sbjct: 715 WFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAI-DAKLL 773
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDVV Y I+I G+CK G+ +A L M G++P+
Sbjct: 774 PDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPD 810
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 152/367 (41%), Gaps = 49/367 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G L + L ++V F+S I G + A+ ++K++ PNV+T+ L
Sbjct: 340 GHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIK 399
Query: 65 ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCK-----DGF-----MMDQGMRP 110
L E +G I K P +VT +++IDG CK GF M+ G P
Sbjct: 400 GLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPP 459
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
DVV V+ D LSK G M A M+ + + N +N+L+DG+ ++
Sbjct: 460 DVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVF 519
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
G + DV ++ ++ + +E+A+ L M G+ DA Y TL
Sbjct: 520 RLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKH 579
Query: 210 -----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N + D V I L+K + +A K F+ + K I T
Sbjct: 580 MKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTY 639
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I G C + RL A IF +L P P+ VT I+IH CK A + M
Sbjct: 640 NTMICGYCSLRRLDEAERIFELLKVTP-FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMA 698
Query: 319 ETGLEPN 325
E G +PN
Sbjct: 699 EKGSKPN 705
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
F PN VT LI LC + A R+F + PN +T+ L +
Sbjct: 667 FGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSF 726
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMT 119
LFEEM E G+ P +V+ + IIDGLCK G + +D + PDVV ++
Sbjct: 727 KLFEEM-QEKGI--SPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
K G++ EA L E M++ V P+ L +
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRALSE 819
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 12/107 (11%)
Query: 229 GLYKNGFVLEAM----KVFSAIGNHKCVLT------IETCNCLIDGLCKIGRLKIAWDIF 278
G+ +GFVL+A+ +V A+ H+ V+ I +CN ++ GL + ++++A +
Sbjct: 216 GVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGL-SVDQIEVASRLL 274
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + G P+VVT+ +I+GFCK G+ +A L ME+ G+EP+
Sbjct: 275 SLVL-DCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPD 320
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 164/389 (42%), Gaps = 87/389 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN T+N LI LC G++ +A + + C P+V+T+N L A+ L
Sbjct: 5 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+ M E C P+ VT ++DG+C +G + D G +P V N +
Sbjct: 65 IDLMRAEG---CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 121
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNT----------LMDGFAWWSK----GCRHD 167
L + +A+ L+ M++ + PN T+N L K GC +
Sbjct: 122 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 181
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +YN +ING C+ RNV+ A+ L +M S G + D TYNTL
Sbjct: 182 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMD 241
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M N PD+ + T I L + G +++A++VF + + C T + +I GL K
Sbjct: 242 NMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKAT 301
Query: 270 RLKIAWDIFHML---------------------------------MQNPGLTPDVVTYNI 296
+L A ++F+ + +Q+ G++P V YN
Sbjct: 302 KLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 361
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G C+ G+ + A ++ M +G P+
Sbjct: 362 ILLGLCRNGKTEFAIDIMAYMVSSGCMPD 390
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 148/349 (42%), Gaps = 56/349 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
TPN VT+N L+ G+C EG + +A L + L C P+ + +NT+ A
Sbjct: 74 TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADE 133
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L EM+ E C P+ T +I LC+ G M G ++VT N + +
Sbjct: 134 LVTEMLREN---CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIIN 190
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRH 166
L + ++ A LL M P+ TYNTL+ G A W GC
Sbjct: 191 GLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLP 250
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D ++N LI C+ + DA+ + ++M +G ++ TY+T+
Sbjct: 251 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 310
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD +Y + L + + EA++ + + N ++ GLC+
Sbjct: 311 NEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRN 369
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G+ + A DI ++ + G PD +TY I+I G EG +A LL+ +
Sbjct: 370 GKTEFAIDIMAYMVSS-GCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 53/284 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ +L PN TFN +I LC +G + +A +L +K++ C N++T+N +
Sbjct: 134 LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLC 193
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A+ L +M +G CKPD+VT ++ GLC +D G P
Sbjct: 194 EQRNVDGAMGLLSKM-KSYG--CKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLP 250
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR----- 165
D VT N + L + G M +A + + M + PN+ TY+T++ G A +K +
Sbjct: 251 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 310
Query: 166 ----HDVYS----YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------- 209
H ++ Y +L D +E+A+ R++ GI YN +
Sbjct: 311 NEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNG 370
Query: 210 ----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+M + PD Y I+GL G++ EA ++
Sbjct: 371 KTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 414
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 39/245 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT-- 63
G LL ++ P++VT+N+L+KGLC+ R ++A L + C P+ +TFNT
Sbjct: 200 GAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLI 259
Query: 64 -------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------- 106
L + A+ +F++M ++ C P+ +T + II GL K +DQ
Sbjct: 260 GFLCQKGLMVDAIEVFKQMPDKG---CTPNSITYSTIISGLAK-ATKLDQALELFNEMGH 315
Query: 107 -GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------F 157
G PD + ++ + L+ D +EEA + + ++P+T YN ++ G F
Sbjct: 316 KGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEF 374
Query: 158 A------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A S GC D +Y ILI G + + +A L ++ S + ++ + +
Sbjct: 375 AIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALL 434
Query: 212 AINNV 216
N+
Sbjct: 435 LDQNI 439
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 63/332 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V+++NTL
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTL--------- 183
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M+ G++PDV T +V+ + L K+ KM++AN
Sbjct: 184 --MNGY--------IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+D G+CK+ V+ A+ + ++
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLID---------------------GHCKNGRVDLAMEIYKQ 272
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 273 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGD 332
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A + + L LI GLC+ GR + D ML M + GL PD T
Sbjct: 333 LDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPDART 389
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++I+ FCK+G K + LL +M+ G P+
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPS 421
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 124/288 (43%), Gaps = 70/288 (24%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L +L S P++ T++ LI GLC E ++ +A LF ++ V PN +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRP 110
F TL IDG CK+G + + Q + P
Sbjct: 250 FTTL-----------------------------IDGHCKNGRVDLAMEIYKQMLSQSLSP 280
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWW 160
D++T N + L K G +++A+ L++ M + + P+ TY TL+DG F
Sbjct: 281 DLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHR 340
Query: 161 SK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+ R D +Y LI+G C++ DA + REMLS G++
Sbjct: 341 KRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK---------------- 384
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
PD+ YT I+ K G V + K+ + V ++ T N L++G
Sbjct: 385 -PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 157 FAWWSKGC----RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFM 211
F W S RH ++SY +I+ C + + +A SL + ++S + A+ + +
Sbjct: 4 FTWLSSPANSNFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILE 63
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
D +V++ I ++GF+ +A++ + HK + I+TC +++ L K+
Sbjct: 64 TRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYF 123
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+ W + +++ G + +NI++H FCK+G + A + + + GL P+
Sbjct: 124 KLVWGFYEEILE-CGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPS 176
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 45/340 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ ++ +PN TF+ LI LC + A + +++ + C+P+ + +N + +L
Sbjct: 314 LMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLS 373
Query: 68 ALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMD------QGMRPDV----VTLN 116
++ + ++CKPD + ++ G C+ D Q R D +T N
Sbjct: 374 ERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFN 433
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-----------WWSKGCR 165
++ D L ++G + A + E M + P+ TY++L++GF+ + S C+
Sbjct: 434 ILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK 493
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D++SYN ++ G C+ EDA L EM+ + + PP+ +
Sbjct: 494 PDIFSYNAVLKGLCRAARWEDAGELIAEMVGK-----------------DCPPNEVTFNI 536
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+ L + G V A++V + N+ I T N LI+G + GRL A + +
Sbjct: 537 LINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---- 592
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD ++YN + G C+ + Q A L+ +M PN
Sbjct: 593 SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPN 632
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 54/342 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+VT+ +LI G C GR+ +A RL + V P+ T+NT+ L L + ++ +
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMPVA---PDTYTYNTV-LKGLCIAKKWEEAEEL 212
Query: 82 I-------CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLSK 124
+ C P+ VT I C++G ++DQ G PDVV + + + S+
Sbjct: 213 MAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSE 272
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS-----------KGCRHDVYS 170
G +++A LL M+ PNT YN + G W KGC + +
Sbjct: 273 QGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEAT 329
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
+++LI+ C++ V+ AV + +M G D YN + +++
Sbjct: 330 FSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV 389
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD+ + + G + +A ++ + + C L T N LID LC+ G + A
Sbjct: 390 CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYAT 449
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+F M TPD+VTY+ +++GF ++G + A L M
Sbjct: 450 QVFEQ-MPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM 490
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 60/355 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALN 70
P+ T+N+++KGLC + EA L ++ C PN +TF N L A+
Sbjct: 187 APDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQ 246
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------RPDVVTLNVMTDNL 122
L ++M +G C PDVV + +I+G + G +DQ + +P+ V N L
Sbjct: 247 LLDQM-PRYG--CTPDVVIYSTLINGFSEQGH-VDQALDLLNTMLCKPNTVCYNAALKGL 302
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+ E+ L+ M+++ +PN T++ L+ GC D
Sbjct: 303 CIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDT 362
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YNI+IN + V+DA+ L M+ + DA +N +
Sbjct: 363 VNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQ 419
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++ P + ID L +NG V A +VF + ++C I T + L++G + G
Sbjct: 420 MFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGL 479
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++A +F + PD+ +YN ++ G C+ + + A L+ +M PN
Sbjct: 480 VEVAIQLFRSM----PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPN 530
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
+TFN LI LC G + A ++F+++ + C P+++T+++L VA+ LF
Sbjct: 430 MTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRS 489
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----------RPDVVTLNVMTDNLSK 124
M CKPD+ + ++ GLC+ D G P+ VT N++ ++L +
Sbjct: 490 MP------CKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQ 543
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------GCRHDVYSYNI 173
G ++ A +LE M P+ TYN L++GF+ + C+ D SYN
Sbjct: 544 KGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAISYNS 603
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ G C+ +DA L EML + T+
Sbjct: 604 TLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 136/339 (40%), Gaps = 54/339 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-----VALNLFEEMVNE 78
++ N LIK LC GR+ +A R+ L + ++ NTL L E ++
Sbjct: 91 ISCNILIKKLCATGRLADAERVLDALKAAAAA-DAVSHNTLVAGYCRDGRLADAERVLGA 149
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVVTLNVMTDNLSKDGKMEE 130
+VVT T +IDG C+ G +D +R PD T N + L K EE
Sbjct: 150 ARATGAANVVTYTALIDGYCRSG-RLDDALRLIASMPVAPDTYTYNTVLKGLCIAKKWEE 208
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L+ MI+ PN T+ T + F GC DV Y+ LIN
Sbjct: 209 AEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLIN 268
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+ + +V+ A+ L ML + + YN M P
Sbjct: 269 GFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ ++ I L +N V A++V + + C N +I+ L + GR+ A +
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ ++ PD + +N ++ GFC+ + A+ L+ M
Sbjct: 386 NSMV----CKPDALGFNAVLKGFCRAERWHDASELIAQM 420
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 63/326 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L++ C EG + A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTL-----------ING 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + ++ +G M G +PDV T +++ + L K+GK++EAN L M
Sbjct: 181 Y--------IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + PN T+ TL I+G+CK+ V+ A+ + ++MLS+G
Sbjct: 233 LDNGLVPNGVTFTTL---------------------IHGHCKNEKVDLAMEIYKQMLSQG 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M +N + PD YTT IDG K G + A+
Sbjct: 272 LSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIAL 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
++ + + L LI LC+ GR A D ML M + GL PD TY ++I
Sbjct: 332 ELRNKMIQESIRLDDVAYTALISCLCREGR---AGDAEKMLREMLSVGLKPDNGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
+ FCK+ + A+ LL +M+ G P
Sbjct: 389 NEFCKKRDSKTASKLLREMQRDGPVP 414
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G + N++ K+G+M A + + + + + P+ ++NTL++G+
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEG 190
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
A + G + DVY+Y+ILING CK+ +++A L EML G+
Sbjct: 191 FRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGL------------- 237
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P+ +TT I G KN V AM+++ + + + T N LI GLCK G LK
Sbjct: 238 ----VPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELK 293
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
D+ ++ N GL PD ++Y +I G CKEG
Sbjct: 294 QVHDLIDEMIMN-GLKPDKISYTTLIDGSCKEG 325
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 36/231 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L + S P++ T++ LI GLC EG++ EA LF ++ PN +T
Sbjct: 184 LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVT 243
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
F TL +A+ ++++M+++ G+ PD++T +I GLCK G
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQ-GL--SPDLITYNTLIYGLCKKGELKQVHDLID 300
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DG 156
M+ G++PD ++ + D K+G +E A L MIQ + + Y L+ +G
Sbjct: 301 EMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360
Query: 157 FA---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
A S G + D +Y ++IN +CK R+ + A L REM +G
Sbjct: 361 RAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 20/175 (11%)
Query: 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
++ D W G R V S+N LINGY K + L EG R +
Sbjct: 156 QSVFDAITKW--GLRPSVVSFNTLINGYIKLGD-----------LDEGFRLKSA------ 196
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD + Y+ I+GL K G + EA ++F+ + ++ V T LI G CK +
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A +I+ ++ GL+PD++TYN +I+G CK+G+ ++ + L+ +M GL+P+
Sbjct: 257 VDLAMEIYKQMLSQ-GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + + +A SL + ++S +G + + + + D +V+
Sbjct: 10 RHTLHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQISDFYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + ++GFV +A++ F HK + +TC +++ L + K+ WD + +++
Sbjct: 70 SGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++ FCKEG+ + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
Query: 130 EANCLLEVMIQRDVNPNTC-TYNTLMDGFAWWSKGCR-HDVYSYNILINGYCKDRNVEDA 187
EA L++V++ R + + +++ +KG + D Y ++ L+ Y + V DA
Sbjct: 31 EAKSLIQVVVSRKGKDSASDVFEAILE-----TKGTQISDFYVFSGLMIAYLESGFVRDA 85
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDG 229
V R IR T + + P + + +
Sbjct: 86 VQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQR 145
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G + A VF AI ++ + N LI+G K+G L + + M G P
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRL-KSAMHASGAQP 204
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV TY+I+I+G CKEG+ +AN L +M + GL PN
Sbjct: 205 DVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPN 240
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 170/373 (45%), Gaps = 54/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + I+ S + VT N+++ G C G+I E+ L+ + C V+++
Sbjct: 306 GNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQ-TVVSY 364
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDGFM----------MD 105
N L L EE ++ + ++CK P+ T +I GLCK+G + D
Sbjct: 365 NILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAED 424
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSK- 162
+ D + M D L K+G+M+EA ++ M +R ++P+ C N L++GF SK
Sbjct: 425 GPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVC--NPLINGFVRASKL 482
Query: 163 -------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GC + SYN LI G CK +A S +EML + + D T + L
Sbjct: 483 EDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLL 542
Query: 210 F----------MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
MA+N PD +Y + GL + +A++++S + C
Sbjct: 543 MDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTC 602
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
V + T N L++GL K+ + A +I+ ++++ GL PD+++YNI I G C + A
Sbjct: 603 VPNLVTRNTLMEGLYKVRDYEKASEIWDCILKD-GLHPDIISYNITIKGLCSCSRISDAI 661
Query: 312 GLLLDMEETGLEP 324
L D G+ P
Sbjct: 662 EFLNDALNRGILP 674
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 172/394 (43%), Gaps = 94/394 (23%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
+PN+ T+N LIK C + +I +A L + P+V ++ TL L AL
Sbjct: 148 SPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALK 207
Query: 71 LFEEMVNEFGVICKPDVVTCTN-IIDGLCKDG-----------FMMDQGMRPDVVTLNVM 118
+F+EM + GV+ VTC N +IDG K G + D + P+VVT N+M
Sbjct: 208 VFDEM-SVRGVVAD---VTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIM 263
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---------------------- 156
+ L K G+ +E+ + E M + + + TY++L+ G
Sbjct: 264 INGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSL 323
Query: 157 -----------------------FAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVS 189
F W + C+ V SYNILI G ++ VE+A+S
Sbjct: 324 VVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQ-TVVSYNILIKGLFENGKVEEAIS 382
Query: 190 LCREMLSEGIRADATTYNTL----------------FMAINNVPP--DSHVYTTYIDGLY 231
+ + +G R ++TTY L F + P D++ Y++ +DGL
Sbjct: 383 IWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLC 442
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G + EA+ + + + L CN LI+G + +L+ A + F M+ G +P +
Sbjct: 443 KEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFRE-MECKGCSPTI 501
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+YN +I G CK + +A + +M E +P+
Sbjct: 502 VSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPD 535
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 156/361 (43%), Gaps = 86/361 (23%)
Query: 50 NVFCCDPNVITFNTL--ALVALN----------LFEEM-----VNEFGVIC--------- 83
++F C P V ++NTL A V LN FE M + + ++
Sbjct: 108 DIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQI 167
Query: 84 ---------------KPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVM 118
KPDV + +I+G+ K G ++ +G+ DV N++
Sbjct: 168 EKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNML 227
Query: 119 TDNLSKDGKMEEANCLLEVMIQR-DVNPNTCTYNTLMDG----------FAWWSKGCRH- 166
D K G ++ + E +++ V PN TYN +++G W + ++
Sbjct: 228 IDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNE 287
Query: 167 ---DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT--------------- 208
D+++Y+ LI+G C+ N++ AV + +E++ + DA T+N
Sbjct: 288 REKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKIKESF 347
Query: 209 -LFMAINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
L+M + + V Y I GL++NG V EA+ ++ + C T LI GLC
Sbjct: 348 ELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLC 407
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG--LEP 324
K GRL A IF PG D Y+ M+ G CKEG+ +A ++ M++ G L+P
Sbjct: 408 KNGRLNKALKIFKEAEDGPG-KLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDP 466
Query: 325 N 325
+
Sbjct: 467 H 467
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 30/224 (13%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVIC- 83
N LI G ++ +A F+++ C P ++++NTL L F E + +
Sbjct: 470 NPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLE 529
Query: 84 ---KPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEE 130
KPD++TC+ ++DGLC++ + +D+G +PD+ N++ L K+E+
Sbjct: 530 KEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLED 589
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF-----------AW---WSKGCRHDVYSYNILIN 176
A L M + PN T NTLM+G W G D+ SYNI I
Sbjct: 590 ALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIK 649
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G C + DA+ + L+ GI A T+N L A N S
Sbjct: 650 GLCSCSRISDAIEFLNDALNRGILPTAVTWNILVRAAVNFRTSS 693
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 138/346 (39%), Gaps = 89/346 (25%)
Query: 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNLFE 73
+V++N LIKGL G++ EA +++ L C P T+ L AL +F+
Sbjct: 361 VVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFK 420
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ------------------ 106
E + G K D ++++DGLCK+G M MD+
Sbjct: 421 EAEDGPG---KLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFV 477
Query: 107 ------------------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
G P +V+ N + L K + EA ++ M++++ P+
Sbjct: 478 RASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMI 537
Query: 149 TYNTLMDGFAW----------WS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREM 194
T + LMDG W KG + D+ YNIL++G C +EDA+ L M
Sbjct: 538 TCSLLMDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHM 597
Query: 195 LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ T NTL ++GLYK +A +++ I
Sbjct: 598 KRSTCVPNLVTRNTL-----------------MEGLYKVRDYEKASEIWDCILKDGLHPD 640
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
I + N I GLC R+ A + + + N G+ P VT+NI++
Sbjct: 641 IISYNITIKGLCSCSRISDAIEFLNDAL-NRGILPTAVTWNILVRA 685
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L + L F P++ +N L+ GLC+ ++ +A +L+ + C PN++T NTL
Sbjct: 558 LWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLME--- 614
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
G+ D + I D + KD G+ PD+++ N+ L ++
Sbjct: 615 ----------GLYKVRDYEKASEIWDCILKD------GLHPDIISYNITIKGLCSCSRIS 658
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLM 154
+A L + R + P T+N L+
Sbjct: 659 DAIEFLNDALNRGILPTAVTWNILV 683
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 145/360 (40%), Gaps = 94/360 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+PN+ +NS+I LC +A + K++ CDP++ITFNTL A
Sbjct: 1079 FSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 1138
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ E + P+ ++ T +I G C G MM +G PDVVT +
Sbjct: 1139 HFLREAIRR---ELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 1195
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L GK+ EA + E M +R V P DV YN+LI+G C
Sbjct: 1196 HGLVVAGKVSEALIVREKMTERQVFP---------------------DVNIYNVLISGLC 1234
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K R + A ++ EML + NV PD VY T IDG ++ + +A
Sbjct: 1235 KKRMLPAAKNILEEMLEK-----------------NVQPDEFVYATLIDGFIRSENLGDA 1277
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW-------------DIFHMLMQNPG 286
K+F + + I +CN +I G C+ G + A D F G
Sbjct: 1278 RKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 1337
Query: 287 LT---------------------PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY+ +I+G+CK G A GL +M+ L PN
Sbjct: 1338 YAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPN 1397
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 149/358 (41%), Gaps = 57/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR G +LLG + + F P +VT+ SLI L +G + + LF ++ PNV
Sbjct: 1029 MGR---GLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQI 1085
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N++ +C C + + M G PD++T N +
Sbjct: 1086 YNSV--------------IDALC-----NCRSATQAMVILKQMFASGCDPDIITFNTLIT 1126
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L +G + +A L I+R++NPN +Y L+ GF +G
Sbjct: 1127 GLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTP 1186
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
DV ++ LI+G V +A+ + +M + D YN L
Sbjct: 1187 DVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNIL 1246
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M NV PD VY T IDG ++ + +A K+F + + I +CN +I G C+
Sbjct: 1247 EEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQF 1306
Query: 269 GRLKIAWDIFHML-MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A I M M+ G PD TY +I G+ K+G A L DM + +PN
Sbjct: 1307 GMMSEA--ILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPN 1362
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 54/340 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A+ V+L ++ S P+++TFN+LI GLC EG + +A ++ +PN +++
Sbjct: 1099 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 1158
Query: 64 LA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
L +VA +L EM+ G PDVVT +I GL G M
Sbjct: 1159 LIHGFCMRGELMVASDLLVEMM---GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT 1215
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--- 161
++ + PDV NV+ L K + A +LE M++++V P+ Y TL+DGF
Sbjct: 1216 ERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLG 1275
Query: 162 -----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG D+ S N +I GYC+ + +A+ M G
Sbjct: 1276 DARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG------------ 1323
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YTT I G K G + A++ + KC + T + LI+G CK G
Sbjct: 1324 -----CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGD 1378
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A +F MQ L+P+VVTY I+I K+ + +A
Sbjct: 1379 TDSAEGLFAN-MQAEALSPNVVTYTILIGSLFKKDKVLRA 1417
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 78/367 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ TP++VTF +LI GL G++ EA + +K+ P+V +N L
Sbjct: 1175 LLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLC 1234
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A N+ EEM+ + +PD +IDG + FM +G+ P
Sbjct: 1235 KKRMLPAAKNILEEMLEKN---VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 1291
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW 160
D+V+ N M + G M EA + M + P+ TY T++ G+A W
Sbjct: 1292 DIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWL 1351
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ C+ +V +Y+ LINGYCK + + A L M +E + + TY L
Sbjct: 1352 CDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKK 1411
Query: 211 ------------MAINNVPPDSHVYTTYIDGLY-------------------KNGFVLEA 239
M +N+ P+ ++GL K+ ++
Sbjct: 1412 DKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVF 1471
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
K+ IG+ + N +I LC+ L+ A D F M G P+ +T+ +++
Sbjct: 1472 KKLVFDIGDPRN----SAYNAIIFSLCRHNMLREALD-FKNRMAKKGYVPNPITFLSLLY 1526
Query: 300 GFCKEGQ 306
GFC G+
Sbjct: 1527 GFCSVGK 1533
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 33/251 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P+V N + L + + ++A L + M+ +D + + L+ G
Sbjct: 938 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEG 997
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
A W GC V YN+LI+GYC+ ++ + L EM + G TY +L
Sbjct: 998 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINW 1057
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M P+ +Y + ID L +AM + + C
Sbjct: 1058 LGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPD 1117
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I T N LI GLC G ++ A ++ L P+ ++Y +IHGFC G+ A+ LL
Sbjct: 1118 IITFNTLITGLCHEGHVRKAEHFLREAIRRE-LNPNQLSYTPLIHGFCMRGELMVASDLL 1176
Query: 315 LDMEETGLEPN 325
++M G P+
Sbjct: 1177 VEMMGRGHTPD 1187
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 163/392 (41%), Gaps = 91/392 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN+V N+ + L +GR+ EA F L P+ IT+N L A+ L
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKL 529
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGMR-----PDVVTLNVMTDN 121
EM E G C P+VV ++ID L K + + M Q M+ P VVT N +
Sbjct: 530 LSEM-EENG--CDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAG 586
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------------GFAWWSKGCRHD 167
L K+G+++EA L + MI D PNT ++NTL+D F C D
Sbjct: 587 LGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD 646
Query: 168 VYSYN----------------------------------ILINGYCKDRNVEDAVSLCRE 193
V +YN L+ G KD +EDA + +E
Sbjct: 647 VLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKE 706
Query: 194 MLSE-GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNG 234
+ G AD + + L I N + D V + L K+G
Sbjct: 707 FVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHG 766
Query: 235 FVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
++A VF + C+ ++E N LIDGL K ++AW +F+ M+N G TPDV T
Sbjct: 767 KAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYK-MKNAGCTPDVFT 825
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN+ + K G+ ++ L +M G +PN
Sbjct: 826 YNLFLDALGKSGKIKELFDLYEEMLFRGCKPN 857
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 56/349 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL---------ALVALNLFEEMVNE 78
L+K LC G+ ++A +F KL FC P++ +N+L +A LF +M N
Sbjct: 758 LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKN- 816
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
C PDV T +D L K G M+ +G +P+ +T N++ L K +
Sbjct: 817 --AGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
++A L ++ D +P TY L+DG + GC + YNIL
Sbjct: 875 DKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNIL 934
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
+NG+ K +VE A L R M+ EGIR D +Y+ + + ++ +
Sbjct: 935 MNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL 994
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD Y I+GL ++ V EA+ +F + N + T N LI L G ++ A
Sbjct: 995 DPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGK 1054
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ L Q GL P+V TYN +I G G +A + M G PN
Sbjct: 1055 MYEEL-QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 153/353 (43%), Gaps = 49/353 (13%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV---ALNLFEEM 75
PN+ TF I+ L G+I EA + K+++ C P+V+T+ L AL LN +E+
Sbjct: 260 PNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKEL 319
Query: 76 VNEFGVIC-KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
+ KPD VT ++D G M G PDVVT ++ D L K
Sbjct: 320 FLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCK 379
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYS 170
GK++EA L+VM ++ V PN TYNTL+ G + S G Y+
Sbjct: 380 VGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYT 439
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
Y + I+ Y K A+ +M + GI + N ++
Sbjct: 440 YILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLK 499
Query: 216 ---VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+ PD+ Y + K G V +A+K+ S + + C + N LID L K R+
Sbjct: 500 KCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVD 559
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW +F M+ L P VVTYN ++ G KEG+ Q+A L M PN
Sbjct: 560 EAWKMFQR-MKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPN 611
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 154/343 (44%), Gaps = 29/343 (8%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + + R+ P +VT+N+L+ GL EGR+ EA LFK + C PN I+FN
Sbjct: 557 RVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFN 616
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FMM 104
TL +AL + M + C PDV+T +I GL K+ M
Sbjct: 617 TLLDCLCKNGEVDLALKMLFRMTE---MNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQM 673
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
+ + PD VTL + + KDG++E+A E + + + + LM G ++
Sbjct: 674 KKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEI 733
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--VPPDSH 221
+ +++ +++ N C+D +V + L + + G DA YN + + P
Sbjct: 734 GQSILFAESLVCNTICEDDSV--LIPLVKFLCKHGKAVDA--YNVFLKLTKSFCITPSLE 789
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y + IDGL K A +F + N C + T N +D L K G++K +D++ +
Sbjct: 790 AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ G P+ +T+NI+I G K KA L D+ P
Sbjct: 850 LFR-GCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSP 891
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 155/384 (40%), Gaps = 87/384 (22%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
V L ++ F N ++ LI L G EA ++++++ P++ T++ L +VA
Sbjct: 178 VALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSAL-MVA 236
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDV---------------- 112
L ++ G++ + M G+RP++
Sbjct: 237 LGKRRDIETVMGLLQE------------------MESLGLRPNIYTFTICIRILGRAGKI 278
Query: 113 -------------------VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
VT V+ D L GK+ A L M P+ TY TL
Sbjct: 279 DEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITL 338
Query: 154 MDGFA----------WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGI 199
+D F+ +WS+ G DV ++ ILI+ CK V++A M +G+
Sbjct: 339 LDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGV 398
Query: 200 RADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
+ TYNTL M + ++ Y +ID K+G +A+K
Sbjct: 399 APNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIK 458
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
F + + V I CN + L + GRL+ A + F+ L + GL PD +TYNI++ +
Sbjct: 459 TFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGL-KKCGLAPDAITYNILMRCY 517
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
K G+ A LL +MEE G +P
Sbjct: 518 GKAGRVDDAIKLLSEMEENGCDPE 541
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 149/343 (43%), Gaps = 55/343 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ F L + PN+ T+N+LI GL R+ EA LF + + T
Sbjct: 380 VGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYT 439
Query: 61 F---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----- 106
+ + + A+ FE+M G++ P++V C + L + G + +
Sbjct: 440 YILFIDYYGKSGESGKAIKTFEKMKTN-GIV--PNIVACNASLYSLAEQGRLEEAKEFFN 496
Query: 107 -----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
G+ PD +T N++ K G++++A LL M + +P N+L+D
Sbjct: 497 GLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKAD 556
Query: 158 ---AWWSKGCRHD-------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W R V +YN L+ G K+ V++A +L + M++
Sbjct: 557 RVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIA----------- 605
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ PP++ + T +D L KNG V A+K+ + C + T N +I GL K
Sbjct: 606 ------DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIK 659
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
R+ A+ +FH + + + PD VT ++ G K+G+ + A
Sbjct: 660 ENRVNYAFWLFHQMKKV--IYPDYVTLCTLLPGVIKDGRIEDA 700
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P T+ LI GL GR+ EA + F+++ + C PN +N L A
Sbjct: 889 FSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETAC 948
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMT 119
LF MV E G+ +PD+ + + ++D LC G + D G+ PD+V N+M
Sbjct: 949 ELFRRMVKE-GI--RPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMI 1005
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCR 165
+ L + ++EEA L + M R + P+ TYN L+ KG
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLE 1065
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+V++YN LI G+ N + A ++ ++M+ G R + T+ L
Sbjct: 1066 PNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------AINNVPP- 218
H + N ++ R VED V + M + I+ TY T+F + P
Sbjct: 120 HTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVA 179
Query: 219 -----------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+ + Y I L K+GF EA+KV+ + + +++T + L+ L K
Sbjct: 180 LEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGK 239
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ + M++ GL P++ T+ I I + G+ +A G+L M++ G P+
Sbjct: 240 RRDIETVMGLLQE-MESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPD 296
>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
Length = 933
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 166/370 (44%), Gaps = 85/370 (22%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF----NTLALVA-----LNLF 72
++VT ++L+ GLC +GR EA LF++++ PN +T+ ++LA L+L
Sbjct: 273 DVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLL 332
Query: 73 EEMVNE---------------FGVICKPDVV-----------------TCTNIIDGLCKD 100
EMV+ G K D V T T +ID LCK
Sbjct: 333 GEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKA 392
Query: 101 G----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
M ++ + P+VVT + + + K G +++A +M +R +NPN TY
Sbjct: 393 HNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTY 452
Query: 151 NTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
TL+DGF + +G + + + L+NG ++ +E+A++L ++
Sbjct: 453 GTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASG 512
Query: 197 EGIRADATTYNTLFMAINNVPPDSHV-YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
G+ D HV YTT IDGL+K G + A K + + +
Sbjct: 513 SGLSLD------------------HVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDA 554
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
N I+ LC +G+ K A I M+N GL PD TYN MI C++G+ KA LL
Sbjct: 555 VVYNVFINCLCILGKFKEAKSILTE-MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLH 613
Query: 316 DMEETGLEPN 325
+M+ + ++PN
Sbjct: 614 EMKMSSIKPN 623
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 62/344 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+ T+N++I C +G +A +L ++ + PN+IT+NTL A
Sbjct: 585 LKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAK 644
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L EMV+ P +T ++ + +MM+ G+ D+ N +
Sbjct: 645 YLLNEMVSAG---FSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLL 701
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L G +A +LE M+ + P+T T+N LI G+C
Sbjct: 702 QVLCYHGMTRKATVVLEEMLGSGIAPDTITFNA---------------------LILGHC 740
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSH 221
K ++++A + +ML + I + T+NTL + +V P++
Sbjct: 741 KSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNL 800
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y + G K +EAM+++ + V + T N LI K G + A ++F
Sbjct: 801 TYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKD- 859
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ P TY+I++ G+ + + L DM+E G P+
Sbjct: 860 MQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPS 903
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 134/344 (38%), Gaps = 73/344 (21%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVIC 83
VT N+L+ GLC G++ AA L + G I
Sbjct: 136 VTVNTLLAGLCRNGQVDAAAAL------------------------------ADRGGGIH 165
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
DV+ +I G C+ G M QG+ DVV N + + G+++ A
Sbjct: 166 ALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARG 225
Query: 134 LLEVMIQRDVNPNTCTYNTLM----------DGFAWWSKGCRH----DVYSYNILINGYC 179
+L++M + V+PN TY + + F + R+ DV + + L+ G C
Sbjct: 226 VLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLC 285
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+D +A +L REM G + TY TL M V D
Sbjct: 286 RDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLV 345
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT +D L K G E + L T LID LCK + A + +
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVL-LE 404
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ ++P+VVT++ +I+GF K G KA M+E G+ PN
Sbjct: 405 MEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPN 448
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 138/344 (40%), Gaps = 61/344 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + R+ ++V +N+L+ G C G++ A + + DPNV T
Sbjct: 182 VGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVAT 241
Query: 61 FNTLALVALNLFEEMVNEFGVICKPD-VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
+ + C+ V ++ +G+ ++G ++D VVTL+ +
Sbjct: 242 YTPFIVY--------------YCRTKGVEEAFDLYEGMVRNGVLLD------VVTLSALV 281
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L +DG+ EA L M + PN TY TL+D A +G
Sbjct: 282 AGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRG---------------- 325
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTL------------------FMAINNVPPDSH 221
++ +SL EM+S G+ D TY L F +N+ +
Sbjct: 326 -----KELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGV 380
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT ID L K V EA +V + + T + +I+G K G L A + + +
Sbjct: 381 TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE-YKRM 439
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ P+VVTY +I GF K A + DM G+E N
Sbjct: 440 MKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVN 483
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 157/408 (38%), Gaps = 120/408 (29%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
+PN+VTF+S+I G G + +A + + +PNV+T+ TL AL
Sbjct: 410 ISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAAL 469
Query: 70 NLFEEM------VNEF--------------------------GVICKPDVVTCTNIIDGL 97
++ +M VN+F G D V T +IDGL
Sbjct: 470 EVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGL 529
Query: 98 CKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANC-------------- 133
K G M MD+ M PD V NV + L GK +EA
Sbjct: 530 FKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQ 589
Query: 134 ---------------------LLEVMIQRDVNPNTCTYNTLMDGF--------------A 158
LL M + PN TYNTL+ G
Sbjct: 590 STYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNE 649
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
S G ++ ++ + R ++ + + M++ G+ AD T YNTL +
Sbjct: 650 MVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVL----- 704
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
Y K VLE M +G+ TI T N LI G CK L A+ +
Sbjct: 705 ------CYHGMTRKATVVLEEM-----LGSGIAPDTI-TFNALILGHCKSSHLDNAFATY 752
Query: 279 -HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
ML QN ++P++ T+N ++ G G+ +A +L++ME++GLEPN
Sbjct: 753 AQMLHQN--ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 58/351 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + LL + MS PN++T+N+L+ GL G + +A L ++ P+ +T
Sbjct: 603 GETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTH 662
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ V L++ E M+N D+ ++ LC G
Sbjct: 663 RRVLQACSQSRRLDVILDIHEWMMNAG---LHADITVYNTLLQVLCYHGMTRKATVVLEE 719
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ G+ PD +T N + K ++ A M+ ++++PN T+NTL+ G +
Sbjct: 720 MLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGR 779
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
G + +Y+IL+ G+ K N +A+ L EM+ +G +TYN
Sbjct: 780 IGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNA 839
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I K G + +A ++F + T T + L+ G
Sbjct: 840 L-----------------ISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWS-- 880
Query: 269 GRLKIAWDIFHML--MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ ++ L M+ G +P T + + F K G +A LL ++
Sbjct: 881 -RIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLLKNL 930
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
D S N L+ +C+ R + A++L R R YN L A+++
Sbjct: 72 DPASLNALLYSHCRLRLLRPAIALLRSS-----RPTTVAYNILLAALSDHAHAPAVLAEM 126
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
VP D T + GL +NG V +A + G L + N LI G C++G
Sbjct: 127 CKRGVPFDGVTVNTLLAGLCRNGQV-DAAAALADRGGGIHALDVIGWNTLIAGYCRVGDT 185
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + M GL DVV YN ++ GFC+ GQ A G+L M+E G++PN
Sbjct: 186 PAALSVADR-MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPN 238
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 152/363 (41%), Gaps = 70/363 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+L + ++ T+ ++ C G I +A + F ++ C PNV+T+ L
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Query: 67 VALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------------- 104
L LFE M++E C P++VT + +IDG CK G +
Sbjct: 562 AYLKAKKVSYANELFETMLSEG---CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618
Query: 105 -------------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
D RP+VVT + D K ++EEA LL+ M PN Y+
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678
Query: 152 TLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
L+DG K G +Y+Y+ LI+ Y K + + A + +ML
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE- 737
Query: 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
N+ P+ +YT IDGL K G EA K+ + C + T
Sbjct: 738 ----------------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 781
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+IDG IG+++ ++ M + G+ P+ VTY ++I CK G A+ LL +M
Sbjct: 782 YTAMIDGFGMIGKIETCLELLER-MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840
Query: 318 EET 320
++T
Sbjct: 841 KQT 843
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 149/353 (42%), Gaps = 70/353 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N + +S + LC+ G+ +A + +++ P+ T++ + +A LF
Sbjct: 447 NKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLF 506
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EEM G++ DV T T ++D CK G M + G P+VVT +
Sbjct: 507 EEM-KRGGLVA--DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGC--------------- 164
K K+ AN L E M+ PN TY+ L+DG K C
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDV 623
Query: 165 ------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
R +V +Y L++G+CK VE+A L M EG
Sbjct: 624 DMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE------------ 671
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P+ VY IDGL K G + EA +V + + H T+ T + LID K+ R
Sbjct: 672 -----PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQD 726
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A + +++N P+VV Y MI G CK G+ +A L+ MEE G +PN
Sbjct: 727 LASKVLSKMLEN-SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 778
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 50/344 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+VT+ +L+ G C R+ EA +L +++ C+PN I ++ L + L+ +E+
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 76 VNEFGVICKPDVV-TCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
E P + T +++ID K M++ P+VV M D L K
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYS 170
GK +EA L+++M ++ PN TY ++DGF SKG + +
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 171 YNILINGYCKDRNVEDAVSLCREML-------SEGIRADATTYNTLF---------MAIN 214
Y +LI+ CK+ ++ A +L EM + G R +N F + +
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQD 876
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLK 272
+ P VY ID L K + A+++ + L T N LI+ LC +++
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 936
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
A+ +F M G+ P++ ++ +I G + + +A LLLD
Sbjct: 937 TAFQLFSE-MTKKGVIPEMQSFCSLIKGLFRNSKISEA-LLLLD 978
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 120/309 (38%), Gaps = 56/309 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ V + LI GLC EA ++ C PNV+T++TL LN
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN-------- 349
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
K + C +++ MM +G P N + G A LL+ M
Sbjct: 350 -----KKQLGRCKRVLN------MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE--DAVSLCREMLS 196
++ C + M G+ YNILI C D++ D + L + S
Sbjct: 399 VK-------CGH---MPGYVV-----------YNILIGSICGDKDSLNCDLLDLAEKAYS 437
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
E + A + +N + S G Y+ F V + +
Sbjct: 438 EMLAAG--------VVLNKINVSSFTRCLCSAGKYEKAF-----SVIREMIGQGFIPDTS 484
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T + +++ LC ++++A+ +F M+ GL DV TY IM+ FCK G ++A +
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEE-MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 543
Query: 317 MEETGLEPN 325
M E G PN
Sbjct: 544 MREVGCTPN 552
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 56/270 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L+ + PN+VT+ ++I G G+I L +++ PN +T
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 61 FNTL--------AL-VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GFMMDQ 106
+ L AL VA NL EEM +I+G K+ G + +
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHW---PTHTAGYRKVIEGFNKEFIESLGLLDEI 873
Query: 107 GM---RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G P + ++ DNL K ++E A LLE T++ + ++
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE---------EVATFSATLVDYSS---- 920
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+YN LI C VE A L EM +G V P+ +
Sbjct: 921 ------TYNSLIESLCLANKVETAFQLFSEMTKKG-----------------VIPEMQSF 957
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ I GL++N + EA+ + I + C L
Sbjct: 958 CSLIKGLFRNSKISEALLLLDFISHMVCPL 987
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 51/203 (25%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N+L+ +C++ + A+ + R +TYN L A
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 214 --------------------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N PD+ YT I GL + EAM
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + C+ + T + L+ G +L + +M+M G P +N ++H +
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMME-GCYPSPKIFNSLVHAY 382
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
C G H A LL M + G P
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMP 405
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 152/363 (41%), Gaps = 70/363 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+L + ++ T+ ++ C G I +A + F ++ C PNV+T+ L
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Query: 67 VALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------------- 104
L LFE M++E C P++VT + +IDG CK G +
Sbjct: 562 AYLKAKKVSYANELFETMLSEG---CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618
Query: 105 -------------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
D RP+VVT + D K ++EEA LL+ M PN Y+
Sbjct: 619 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 678
Query: 152 TLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
L+DG K G +Y+Y+ LI+ Y K + + A + +ML
Sbjct: 679 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE- 737
Query: 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
N+ P+ +YT IDGL K G EA K+ + C + T
Sbjct: 738 ----------------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 781
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+IDG IG+++ ++ M + G+ P+ VTY ++I CK G A+ LL +M
Sbjct: 782 YTAMIDGFGMIGKIETCLELLER-MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840
Query: 318 EET 320
++T
Sbjct: 841 KQT 843
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 39/340 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F ++ ++ F P+ T++ ++ LC ++ A LF+++ +V T+
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521
Query: 62 NTL--ALVALNLFEEMVNEFG----VICKPDVVTCTNIIDGLCKDG----------FMMD 105
+ + L E+ F V C P+VVT T +I K M+
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLS 581
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G P++VT + + D K G++E+A + E M P+ Y D R
Sbjct: 582 EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD-----DNSER 636
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+V +Y L++G+CK VE+A L M EG P+ VY
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE-----------------PNQIVYDA 679
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL K G + EA +V + + H T+ T + LID K+ R +A + +++N
Sbjct: 680 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN- 738
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VV Y MI G CK G+ +A L+ MEE G +PN
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 778
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 50/344 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+VT+ +L+ G C R+ EA +L +++ C+PN I ++ L + L+ +E+
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696
Query: 76 VNEFGVICKPDVV-TCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
E P + T +++ID K M++ P+VV M D L K
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYS 170
GK +EA L+++M ++ PN TY ++DGF SKG + +
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 171 YNILINGYCKDRNVEDAVSLCREML-------SEGIRADATTYNTLF---------MAIN 214
Y +LI+ CK+ ++ A +L EM + G R +N F + +
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQD 876
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLK 272
+ P VY ID L K + A+++ + L T N LI+ LC +++
Sbjct: 877 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 936
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
A+ +F M G+ P++ ++ +I G + + +A LLLD
Sbjct: 937 TAFQLFSE-MTKKGVIPEMQSFCSLIKGLFRNSKISEA-LLLLD 978
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 120/309 (38%), Gaps = 56/309 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ V + LI GLC EA ++ C PNV+T++TL LN
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN-------- 349
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
K + C +++ MM +G P N + G A LL+ M
Sbjct: 350 -----KKQLGRCKRVLN------MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE--DAVSLCREMLS 196
++ C + M G+ YNILI C D++ D + L + S
Sbjct: 399 VK-------CGH---MPGYV-----------VYNILIGSICGDKDSLNCDLLDLAEKAYS 437
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
E + A + +N + S G Y+ F V + +
Sbjct: 438 EMLAAG--------VVLNKINVSSFTRCLCSAGKYEKAF-----SVIREMIGQGFIPDTS 484
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T + +++ LC ++++A+ +F M+ GL DV TY IM+ FCK G ++A +
Sbjct: 485 TYSKVLNYLCNASKMELAFLLFEE-MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 543
Query: 317 MEETGLEPN 325
M E G PN
Sbjct: 544 MREVGCTPN 552
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 102/265 (38%), Gaps = 56/265 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L+ + PN+VT+ ++I G G+I L +++ PN +T
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816
Query: 61 FNTL--------AL-VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GFMMDQ 106
+ L AL VA NL EEM +I+G K+ G + +
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHW---PTHTAGYRKVIEGFNKEFIESLGLLDEI 873
Query: 107 GM---RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G P + ++ DNL K ++E A LLE T++ + ++
Sbjct: 874 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE---------EVATFSATLVDYSS---- 920
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+YN LI C VE A L EM +G V P+ +
Sbjct: 921 ------TYNSLIESLCLANKVETAFQLFSEMTKKG-----------------VIPEMQSF 957
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGN 248
+ I GL++N + EA+ + I +
Sbjct: 958 CSLIKGLFRNSKISEALLLLDFISH 982
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 51/203 (25%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N+L+ +C++ + A+ + R +TYN L A
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 214 --------------------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N PD+ YT I GL + EAM
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 323
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + C+ + T + L+ G +L + +M+M G P +N ++H +
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMME-GCYPSPKIFNSLVHAY 382
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
C G H A LL M + G P
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMP 405
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 164/389 (42%), Gaps = 87/389 (22%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN T+N LI LC G++ +A + + C P+V+T+N L A+ L
Sbjct: 165 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 224
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+ M E C P+ VT ++DG+C +G + D G +P V N +
Sbjct: 225 IDLMRAEG---CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 281
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNT----------LMDGFAWWSK----GCRHD 167
L + +A+ L+ M++ + PN T+N L K GC +
Sbjct: 282 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 341
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
+ +YN +ING C+ RNV+ A+ L +M S G + D TYNTL
Sbjct: 342 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMD 401
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M N PD+ + T I L + G +++A++VF + + C T + +I GL K
Sbjct: 402 NMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKAT 461
Query: 270 RLKIAWDIFHML---------------------------------MQNPGLTPDVVTYNI 296
+L A ++F+ + +Q+ G++P V YN
Sbjct: 462 KLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 521
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G C+ G+ + A ++ M +G P+
Sbjct: 522 ILLGLCRNGKTEFAIDIMAYMVSSGCMPD 550
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 139/338 (41%), Gaps = 52/338 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNL 71
S P+ N L++ LC GR +A R+ V C P AL A L
Sbjct: 97 SPRPPDAALANRLVRDLCRRGRPDDAERV-----VGACGPAATVVAYGALTDGYCRAGRL 151
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+ G+ +P+ T +I LC+ G + D +G PDVVT N++ +
Sbjct: 152 GDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA 211
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHD 167
K +A L+++M PN TYN LMDG S GC+
Sbjct: 212 TCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPS 271
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
+YN ++ G C DA L EML E N PP+ + I
Sbjct: 272 TVNYNTVLKGLCSAERWGDADELVTEMLRE-----------------NCPPNEATFNVVI 314
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
L + G + +A+++ + H C I T N +I+GLC+ + A + M++ G
Sbjct: 315 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSK-MKSYGC 373
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD+VTYN ++ G C Q A L+ +M + G P+
Sbjct: 374 KPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPD 411
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 148/349 (42%), Gaps = 56/349 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
TPN VT+N L+ G+C EG + +A L + L C P+ + +NT+ A
Sbjct: 234 TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADE 293
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L EM+ E C P+ T +I LC+ G M G ++VT N + +
Sbjct: 294 LVTEMLREN---CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIIN 350
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRH 166
L + ++ A LL M P+ TYNTL+ G A W GC
Sbjct: 351 GLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLP 410
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
D ++N LI C+ + DA+ + ++M +G ++ TY+T+
Sbjct: 411 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 470
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD +Y + L + + EA++ + + N ++ GLC+
Sbjct: 471 NEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRN 529
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
G+ + A DI ++ + G PD +TY I+I G EG +A LL+ +
Sbjct: 530 GKTEFAIDIMAYMVSS-GCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 55/285 (19%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L+ +L PN TFN +I LC +G + +A +L +K++ C N++T+N +
Sbjct: 294 LVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLC 353
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
A+ L +M +G CKPD+VT ++ GLC +D G P
Sbjct: 354 EQRNVDGAMGLLSKM-KSYG--CKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLP 410
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
D VT N + L + G M +A + + M + PN+ TY+T++ G A +
Sbjct: 411 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 470
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------- 209
KG D Y +L D +E+A+ R++ GI YN +
Sbjct: 471 NEMGHKGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRN 529
Query: 210 -----------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+M + PD Y I+GL G++ EA ++
Sbjct: 530 GKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELL 574
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 39/245 (15%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT-- 63
G LL ++ P++VT+N+L+KGLC+ + ++A L + C P+ +TFNT
Sbjct: 360 GAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLI 419
Query: 64 -------LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ---------- 106
L + A+ +F++M ++ C P+ +T + II GL K +DQ
Sbjct: 420 GFLCQKGLMVDAIEVFKQMPDKG---CTPNSITYSTIISGLAK-ATKLDQALELFNEMGH 475
Query: 107 -GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------F 157
G PD + ++ + L+ D +EEA + + ++P+T YN ++ G F
Sbjct: 476 KGFNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEF 534
Query: 158 A------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A S GC D +Y ILI G + + +A L ++ S + ++ + +
Sbjct: 535 AIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALL 594
Query: 212 AINNV 216
N+
Sbjct: 595 LDQNI 599
>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 159/358 (44%), Gaps = 54/358 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL + + PN V FN LI LC +G + A++L + + C PN +T+
Sbjct: 49 GRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTY 108
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
N+L A++L MV C P+ +T ++DG K G +D
Sbjct: 109 NSLVHGLCLKGKLDKAMSLLNRMVAN---KCVPNDITFGTLVDGFVKHGRALDGVRVLVS 165
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
+G R + + + + L K+GK E L + M+++ PNT Y+ L+DG
Sbjct: 166 LEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 225
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + ++Y+ L+ GY + ++ A+ + +EM Y+
Sbjct: 226 PDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSI 285
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L I+GL KNG + EA+ V+ + + L + + +I G C
Sbjct: 286 L-----------------INGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNA 328
Query: 269 GRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ +F ML NP L PDVVTYNI+++ FC + +A +L M + G +P+
Sbjct: 329 QLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPD 386
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M D+ D T + + L +G+++EA LL+ M PN +N L+
Sbjct: 26 MSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGD 85
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ KGC + +YN L++G C ++ A+SL M++
Sbjct: 86 LSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVA------------ 133
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
N P+ + T +DG K+G L+ ++V ++ + + LI GL K
Sbjct: 134 -----NKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 188
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ + ++ +++ G P+ + Y+ +I G C+EG+ +A L++M+ G PN
Sbjct: 189 GKGEHGMQLWKEMVEK-GCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPN 244
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 19/170 (11%)
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
++ C+ NV+ AV + R M AD TY+TL M +
Sbjct: 6 IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
P+ + I L K G + A K+ + CV T N L+ GLC G+L A
Sbjct: 66 TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + ++ N P+ +T+ ++ GF K G+ +L+ +EE G N
Sbjct: 126 SLLNRMVANK-CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGN 174
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 41/167 (24%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFK-------KLNVFCCDPNVITFNTLALV--ALNLFEE 74
V ++ LI GLC G++ EA ++K KL+V + F LV + LF +
Sbjct: 281 VCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQ 340
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT----LNVMTD 120
M+ + +PDVVT +++ C M+DQG PD +T L + D
Sbjct: 341 MLCHNPKL-QPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRD 399
Query: 121 NLS--KDGK--MEE-------------ANCLLEVMIQRDVNPNTCTY 150
N+ +DG+ ++E A+ ++EVM+Q+ + P T+
Sbjct: 400 NMDPPQDGREFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTW 446
>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g14770, mitochondrial-like, partial [Cucumis
sativus]
Length = 697
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 158/374 (42%), Gaps = 94/374 (25%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------ALV--AL 69
PN +T+++LI G C G I A ++ C PNVIT+++L L+ A
Sbjct: 125 LVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAF 184
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ +MV++ + P++ T ++DG K G+ M G++ +V L+
Sbjct: 185 KVLRKMVHKNAM---PNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFV 241
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+N+ + G+MEEA L+ M + P+ Y LMDGF
Sbjct: 242 NNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGF---------------------L 280
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF-----------------MAINNVPPDSHV 222
K V A++L +EM S+ + D T+N L M + PD
Sbjct: 281 KSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGKSDTESIYSAMREMGLSPDLAT 340
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF---- 278
Y T ++G +K G A+++++ + + K + TCN +I+GLC+ GR++ A DI
Sbjct: 341 YNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMV 400
Query: 279 ------------------------------HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
H L+ N L D YNI+I CK G +
Sbjct: 401 LMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTR 460
Query: 309 KANGLLLDMEETGL 322
KA +L DMEE G+
Sbjct: 461 KATAVLKDMEERGI 474
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 168/388 (43%), Gaps = 85/388 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T++SLI G +G + +A ++ +K+ PN+ T+ L +AL+L
Sbjct: 162 PNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDL 221
Query: 72 F-------------------------------EEMVNEFGVI-CKPDVVTCTNIIDGLCK 99
+ EE+V + KPD+V TN++DG K
Sbjct: 222 YSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLK 281
Query: 100 DGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
G M + + D+VT NV+ + L K GK + + M + ++P+ T
Sbjct: 282 SGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGK-SDTESIYSAMREMGLSPDLAT 340
Query: 150 YNTLMDG----------FAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
YNT+++G W S+ + + NI+ING C+ +E+A+ + +EM+
Sbjct: 341 YNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMV 400
Query: 196 SEGIRADATTYNTLF-----------------MAIN-NVPPDSHVYTTYIDGLYKNGFVL 237
G+ +TTY L + +N + D VY I L K G
Sbjct: 401 LMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTR 460
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A V + + T N LI G C LK A+ + ++ ++PD+ TYN++
Sbjct: 461 KATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSER-VSPDIETYNLL 519
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G K G +A+ LL ++++ GL PN
Sbjct: 520 LGGLSKAGLIHEADDLLSEIKKRGLVPN 547
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 96/376 (25%), Positives = 157/376 (41%), Gaps = 60/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L+ ++ P++V + +L+ G G++ A L +++ +++TF
Sbjct: 248 GRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTF 307
Query: 62 NTLALVALNLFEE-------MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
N L L + + E G+ PD+ T +++G K G M
Sbjct: 308 NVLINCLFKLGKSDTESIYSAMREMGL--SPDLATYNTMLNGNFKKGNWTSALELWNEMK 365
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
+ + P+ +T N+M + L + G+ME A +L+ M+ + P + TY L++ SK
Sbjct: 366 SRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLN---ISSKSR 422
Query: 165 RHDVY-----------------SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
R D YNILI+ CK A ++ ++M GI AD TTYN
Sbjct: 423 RADTILQTHELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYN 482
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L M V PD Y + GL K G + EA + S I
Sbjct: 483 ALIHGYCISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKR 542
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V T L+ G CK+ K I+ M+++ G P YN++I F K G+ +
Sbjct: 543 GLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIK--GFIPKPRAYNMLIGYFSKMGKMK 600
Query: 309 KANGLLLDMEETGLEP 324
+A L+ +M+ G+ P
Sbjct: 601 QAKELMNEMQTKGVSP 616
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/386 (24%), Positives = 154/386 (39%), Gaps = 88/386 (22%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
L ++ S P++VTF S++ GLC G++ E L +++ + N +++ T+ L
Sbjct: 8 ALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSY-TILL 66
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
AL + + L M+ +G DV+ V+ D L K G
Sbjct: 67 DAL------------------FKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSG 108
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYN 172
+++EA L + Q ++ PN TY+ L+DG K C +V +Y+
Sbjct: 109 QIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYS 168
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------------- 210
LINGY K + DA + R+M+ + + TY L
Sbjct: 169 SLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQG 228
Query: 211 -------------------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
MA + PD YT +DG K+G V A
Sbjct: 229 GLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSA 288
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + V I T N LI+ L K+G K + + M+ GL+PD+ TYN M++
Sbjct: 289 LNLAQEMTSKNVVFDIVTFNVLINCLFKLG--KSDTESIYSAMREMGLSPDLATYNTMLN 346
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G K+G A L +M+ L PN
Sbjct: 347 GNFKKGNWTSALELWNEMKSRKLIPN 372
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 100/257 (38%), Gaps = 69/257 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN +T N +I GLC GR+ A + K++ + P T+ L A L
Sbjct: 371 PNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQT 430
Query: 72 FEEMVN----------------------------------EFGVICKPDVVTCTNIIDGL 97
E +VN E G+I D T +I G
Sbjct: 431 HELLVNMQLKVDKDVYNILISNLCKLGMTRKATAVLKDMEERGIIA--DTTTYNALIHGY 488
Query: 98 C-----KDGFM-----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
C K FM + + + PD+ T N++ LSK G + EA+ LL + +R + PN
Sbjct: 489 CISSHLKRAFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNA 548
Query: 148 CTYNTLMDGFAWWS--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
CTY TLM G KG +YN+LI + K ++ A L E
Sbjct: 549 CTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNE 608
Query: 194 MLSEGIRADATTYNTLF 210
M ++G+ TTY+ L
Sbjct: 609 MQTKGVSPTCTTYDILI 625
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 29/165 (17%)
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLF-----------------------MAINNVPPDS 220
+E+A++L EM+ GI D T+ ++ M +NNV
Sbjct: 5 LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVS--- 61
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
YT +D L+K G V EA+ + + + C LIDGL K G++K A +F
Sbjct: 62 --YTILLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCN 119
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L Q L P+ +TY+ +I G CK G A L +MEE PN
Sbjct: 120 LYQ-LNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPN 163
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+ +L +P++ T+N L+ GL G I EA L ++ PN T+ TL
Sbjct: 497 AFMTYSTMLSERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETL-- 554
Query: 67 VALNLFEEMVNEFGVICK-PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
M CK + C I + GF+ P N++ SK
Sbjct: 555 --------MCGH----CKVRNTKECLRIYCEMVIKGFI------PKPRAYNMLIGYFSKM 596
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
GKM++A L+ M + V+P TY+ L+ G+
Sbjct: 597 GKMKQAKELMNEMQTKGVSPTCTTYDILICGW 628
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 152/363 (41%), Gaps = 70/363 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+L + ++ T+ ++ C G I +A + F ++ C PNV+T+ L
Sbjct: 461 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 520
Query: 67 VALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------------- 104
L LFE M++E C P++VT + +IDG CK G +
Sbjct: 521 AYLKAKKVSYANELFETMLSEG---CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 577
Query: 105 -------------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
D RP+VVT + D K ++EEA LL+ M PN Y+
Sbjct: 578 DVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYD 637
Query: 152 TLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
L+DG K G +Y+Y+ LI+ Y K + + A + +ML
Sbjct: 638 ALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE- 696
Query: 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
N+ P+ +YT IDGL K G EA K+ + C + T
Sbjct: 697 ----------------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVT 740
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+IDG IG+++ ++ M + G+ P+ VTY ++I CK G A+ LL +M
Sbjct: 741 YTAMIDGFGMIGKIETCLELLER-MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 799
Query: 318 EET 320
++T
Sbjct: 800 KQT 802
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 39/340 (11%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F ++ ++ F P+ T++ ++ LC ++ A LF+++ +V T+
Sbjct: 421 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 480
Query: 62 NTL--ALVALNLFEEMVNEFG----VICKPDVVTCTNIIDGLCKDG----------FMMD 105
+ + L E+ F V C P+VVT T +I K M+
Sbjct: 481 TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLS 540
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G P++VT + + D K G++E+A + E M P+ Y D R
Sbjct: 541 EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYD-----DNSER 595
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+V +Y L++G+CK VE+A L M EG P+ VY
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCE-----------------PNQIVYDA 638
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
IDGL K G + EA +V + + H T+ T + LID K+ R +A + +++N
Sbjct: 639 LIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN- 697
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VV Y MI G CK G+ +A L+ MEE G +PN
Sbjct: 698 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 737
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 152/344 (44%), Gaps = 50/344 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+VT+ +L+ G C R+ EA +L +++ C+PN I ++ L + L+ +E+
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 655
Query: 76 VNEFGVICKPDVV-TCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
E P + T +++ID K M++ P+VV M D L K
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+++M ++ PN TY ++DGF SKG + +
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 775
Query: 171 YNILINGYCKDRNVEDAVSLCREML-------SEGIRADATTYNTLF---------MAIN 214
Y +LI+ CK+ ++ A +L EM + G R +N F + +
Sbjct: 776 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQD 835
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLK 272
+ P VY ID L K + A+++ + L T N LI+ LC +++
Sbjct: 836 DTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVE 895
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
A+ +F M G+ P++ ++ +I G + + +A LLLD
Sbjct: 896 TAFQLFSE-MTKKGVIPEMQSFCSLIKGLFRNSKISEA-LLLLD 937
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 120/309 (38%), Gaps = 56/309 (18%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ V + LI GLC EA ++ C PNV+T++TL LN
Sbjct: 257 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN-------- 308
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
K + C +++ MM +G P N + G A LL+ M
Sbjct: 309 -----KKQLGRCKRVLN------MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 357
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVE--DAVSLCREMLS 196
++ C + M G+ YNILI C D++ D + L + S
Sbjct: 358 VK-------CGH---MPGYVV-----------YNILIGSICGDKDSLNFDLLDLAEKAYS 396
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
E + A + +N + S G Y+ F V + +
Sbjct: 397 EMLAAG--------VVLNKINVSSFTRCLCSAGKYEKAF-----SVIREMIGQGFIPDTS 443
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T + +++ LC ++++A+ +F M+ GL DV TY IM+ FCK G ++A +
Sbjct: 444 TYSKVLNYLCNASKMELAFLLFEE-MKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNE 502
Query: 317 MEETGLEPN 325
M E G PN
Sbjct: 503 MREVGCTPN 511
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 104/270 (38%), Gaps = 56/270 (20%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + L+ + PN+VT+ ++I G G+I L +++ PN +T
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 775
Query: 61 FNTL--------AL-VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----GFMMDQ 106
+ L AL VA NL EEM +I+G K+ G + +
Sbjct: 776 YRVLIDHCCKNGALDVAHNLLEEMKQTHW---PTHTAGYRKVIEGFNKEFIESLGLLDEI 832
Query: 107 GM---RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G P + ++ DNL K ++E A LLE T++ + ++
Sbjct: 833 GQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE---------EVATFSATLVDYSS---- 879
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
+YN LI C VE A L EM +G V P+ +
Sbjct: 880 ------TYNSLIESLCLANKVETAFQLFSEMTKKG-----------------VIPEMQSF 916
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+ I GL++N + EA+ + I + C L
Sbjct: 917 CSLIKGLFRNSKISEALLLLDFISHMVCPL 946
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 51/203 (25%)
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------------ 213
N+L+ +C++ + A+ + R +TYN L A
Sbjct: 163 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 222
Query: 214 --------------------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N PD+ YT I GL + EAM
Sbjct: 223 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMD 282
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + C+ + T + L+ G +L + +M+M G P +N ++H +
Sbjct: 283 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMME-GCYPSPKIFNSLVHAY 341
Query: 302 CKEGQHQKANGLLLDMEETGLEP 324
C G H A LL M + G P
Sbjct: 342 CTSGDHSYAYKLLKKMVKCGHMP 364
>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
Length = 554
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 148/333 (44%), Gaps = 65/333 (19%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT----- 63
LL + F+ + T +++ LC +GR + + F+++ PNV+ +
Sbjct: 194 ALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGL 253
Query: 64 ----LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----------MMDQGM 108
A ++ EEMV G KP+V T T +IDGLCK G+ +
Sbjct: 254 CKRRYVKQAFHVLEEMV---GRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSY 310
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FA 158
+P+V T VM ++GK+ A LL M+++ + PNT TY TL+ G F
Sbjct: 311 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 370
Query: 159 WWSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
+K G ++Y+YN +I+G+CK +++A + R S+G++ D TY L
Sbjct: 371 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 430
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL--- 253
M N PD YT+ I + + E+ K F KC++
Sbjct: 431 KQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFD-----KCLMIGL 485
Query: 254 --TIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
T +T +I G CK+GR +A +F ++QN
Sbjct: 486 LPTKQTYTSMIAGYCKVGRSTMALRVFERMVQN 518
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 52/307 (16%)
Query: 44 RLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF- 102
R F+ L V CC + L A+ + F + D TCT ++ LC+ G
Sbjct: 174 RSFRALVVVCCREGKVEEVDALLAAMWRYG-----FSL----DNATCTVVVRSLCEKGRF 224
Query: 103 ---------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL 153
M++ G P+VV D L K +++A +LE M+ R + PN T+ TL
Sbjct: 225 KDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 284
Query: 154 MDGF---AWWSKGCR------------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+DG W + R +V++Y ++I GYC++ + A L M+ +G
Sbjct: 285 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQG 344
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
++ P+++ YTT I G K G A ++ + + + I T
Sbjct: 345 LK-----------------PNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTY 387
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +IDG CK G+++ A+ + M GL D +TY I+I CK+G A L M
Sbjct: 388 NAVIDGFCKKGKIQEAYKVLRMATSQ-GLKFDKITYTILITEHCKQGHITYALDLFDRMV 446
Query: 319 ETGLEPN 325
E G P+
Sbjct: 447 ENGCCPD 453
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 62/322 (19%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A+ FV G + M+ ++ GR+ EAA + ++ V T N
Sbjct: 89 AATAFVARGSLPMA-----HEVMRGMVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANW 143
Query: 64 LALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLS 123
+ V L E G V + DG+ + G PD + +
Sbjct: 144 VLRVGL--------ETG-----SFVYARKVFDGMTRAGVC------PDERSFRALVVVCC 184
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRN 183
++GK+EE + LL M W G D + +++ C+
Sbjct: 185 REGKVEEVDALLAAM---------------------WRYGFSLDNATCTVVVRSLCEKGR 223
Query: 184 VEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
+D R ML G PP+ YT +IDGL K +V +A V
Sbjct: 224 FKDVSEFFRRMLEMG-----------------TPPNVVNYTAWIDGLCKRRYVKQAFHVL 266
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + T LIDGLCKIG + A+ +F L+++ P+V TY +MI G+C+
Sbjct: 267 EEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCR 326
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
EG+ +A LL+ M E GL+PN
Sbjct: 327 EGKLARAEMLLVRMVEQGLKPN 348
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F L+ ++ F PN+ T+N++I G C +G+I EA ++ + + IT+ L
Sbjct: 368 AFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILIT 427
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------G 107
AL+LF+ MV E G C PD+ T++I C+ M + G
Sbjct: 428 EHCKQGHITYALDLFDRMV-ENG--CCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIG 484
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
+ P T M K G+ A + E M+Q
Sbjct: 485 LLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQ 517
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 170/377 (45%), Gaps = 75/377 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNV----FCCDPN 57
GR ++ ++ P++VTFNS I LC EG++L+A+R+F + + PN
Sbjct: 231 GRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPN 290
Query: 58 VITFNTL--ALVALNLFEEMVNEFGVICKPD---VVTCTNI-IDGLCKDGF--------- 102
IT+N + + L E+ F I + D + NI + GL + G
Sbjct: 291 SITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLK 350
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M D+G+ P + + N++ D L K G + +A ++ +M + V P+ TY L+ G+
Sbjct: 351 QMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVG 410
Query: 162 K--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
K C + Y+ NIL++ K + +A L R+M +G D T N
Sbjct: 411 KVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCN 470
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------SAIGN----------- 248
+ +DGL +G + +A+++ +A+GN
Sbjct: 471 II-----------------VDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513
Query: 249 ----HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ C+ + T + L++GLCK GR A ++F +M L PD V YNI IH FCK+
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMM-GEKLQPDSVAYNIFIHHFCKQ 572
Query: 305 GQHQKANGLLLDMEETG 321
G+ A +L DME+ G
Sbjct: 573 GKISSAFRVLKDMEKKG 589
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 159/383 (41%), Gaps = 82/383 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
PN TF L++G C G + L + F PN + +NT+ + +
Sbjct: 180 PNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKM 239
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------------RPDVVTLNV 117
E+M E G++ PD+VT + I LCK+G ++D RP+ +T N+
Sbjct: 240 VEKMREE-GLV--PDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNL 296
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
M K G +E+A L E + + D + +YN + G K G
Sbjct: 297 MLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG 356
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+YSYNIL++G CK + DA ++ M G+ DA TY L
Sbjct: 357 IGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAK 416
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M NN P+++ + L+K G + EA ++ + L TCN ++DGL
Sbjct: 417 SLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGL 476
Query: 266 CKIGRLKIAWDIFH-----------------------MLMQNPGLTPDVVTYNIMIHGFC 302
C G L A +I L++N L PD++TY+ +++G C
Sbjct: 477 CGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCL-PDLITYSTLLNGLC 535
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K G+ +A L +M L+P+
Sbjct: 536 KAGRFAEAKNLFAEMMGEKLQPD 558
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 139/329 (42%), Gaps = 65/329 (19%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
P TFN LI+ LC + A LF ++ C PN TF L L
Sbjct: 144 APQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLE 203
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L M FGV+ P+ V I+ C++G M ++G+ PD+VT N
Sbjct: 204 LLNAM-ESFGVL--PNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRIS 260
Query: 121 NLSKDGKMEEANCLLEVMIQRDV----NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
L K+GK+ +A+ + M + PN+ TYN +++
Sbjct: 261 ALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYN---------------------LMLK 299
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFV 236
G+CK +EDA +L + A +YN ++ GL ++G
Sbjct: 300 GFCKVGLLEDAKTLFESIRENDDLASLQSYNI-----------------WLQGLVRHGKF 342
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
+EA V + + +I + N L+DGLCK+G L A I ++ +N G+ PD VTY
Sbjct: 343 IEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRN-GVCPDAVTYGC 401
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++HG+C G+ A LL +M PN
Sbjct: 402 LLHGYCSVGKVDAAKSLLQEMMRNNCLPN 430
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 99/426 (23%), Positives = 161/426 (37%), Gaps = 110/426 (25%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S ++G + + P+ VT+ L+ G C+ G++ A L +++ C PN T
Sbjct: 374 LGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYT 433
Query: 61 FNTL-----ALVALNLFEEMV---NEFGVICKPDVVTCTNIIDGLCKDGFM-----MDQG 107
N L + ++ EE++ NE G D VTC I+DGLC G + + +G
Sbjct: 434 CNILLHSLWKMGRISEAEELLRKMNEKGYGL--DTVTCNIIVDGLCGSGELDKAIEIVKG 491
Query: 108 MR----------------------------PDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
MR PD++T + + + L K G+ EA L M+
Sbjct: 492 MRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMM 551
Query: 140 QRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILING-------- 177
+ P++ YN + F KGC + +YN LI G
Sbjct: 552 GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIF 611
Query: 178 ---------------------------YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
C+ VEDA +L EM+ + I + ++ L
Sbjct: 612 EIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Query: 211 MAINNVPP---DSHVYTTYI------DGLYK--------NGFVLEAMKVFSAIGNHKCVL 253
A VP V+ T + +GLY G +L+A ++ A+ + L
Sbjct: 672 EAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFEL 731
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
L++ LCK L++A I H ++ + G D +I G K G ++AN
Sbjct: 732 GTFLYKDLVESLCKKDELEVASGILHKMI-DRGYGFDPAALMPVIDGLGKMGNKKEANSF 790
Query: 314 LLDMEE 319
M E
Sbjct: 791 ADKMME 796
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR S LL ++ + + VT N ++ GLC G + +A + K + V
Sbjct: 444 MGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVH----GSAA 499
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
L + L ++ + E C PD++T + +++GLCK G MM + ++P
Sbjct: 500 LGNLGNSYIGLVDDSLIENN--CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQP 557
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------------ 158
D V N+ + K GK+ A +L+ M ++ + + TYN+L+ G
Sbjct: 558 DSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLM 617
Query: 159 --WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
KG ++ +YN I C+ VEDA +L EM+ + I + ++ L A V
Sbjct: 618 DEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKV 677
Query: 217 PP---DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
P V+ T + S G + + ++ + + L G+L
Sbjct: 678 PDFDMAQEVFETAV----------------SICGQKEGLYSL-----MFNELLAAGQLLK 716
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
A ++ ++ + G Y ++ CK+ + + A+G+L M + G
Sbjct: 717 ATELLEAVL-DRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRG 763
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 37/253 (14%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS------- 161
+P V N++ ++ K+ ++E + L + M+ + P T T+N L+ S
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168
Query: 162 -------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---- 210
KGC+ + +++ IL+ GYCK + + L M S G+ + YNT+
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFC 228
Query: 211 --------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
M + PD + + I L K G VL+A ++FS + + +
Sbjct: 229 REGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPR 288
Query: 257 ----TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T N ++ G CK+G L+ A +F + +N L + +YNI + G + G+ +A
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLA-SLQSYNIWLQGLVRHGKFIEAET 347
Query: 313 LLLDMEETGLEPN 325
+L M + G+ P+
Sbjct: 348 VLKQMTDKGIGPS 360
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 162/378 (42%), Gaps = 60/378 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S + + F+ ++ ++ SLI GR EA +FKK+ C P +IT+
Sbjct: 187 GRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITY 246
Query: 62 NTLALVALNLFEEMVNEFGVICK-----------PDVVTCTNIIDGLCKDGFMMDQ---- 106
N V LN+F +M + I PD T +I CK G + +
Sbjct: 247 N----VILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT-CCKRGSLHQEAAQV 301
Query: 107 -------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
G D VT N + D K + +EA +L M+ +P+ TYN+L+ +A
Sbjct: 302 FEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYAR 361
Query: 159 -------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
KG + DV++Y L++G+ + VE A+S+ EM + G + + T
Sbjct: 362 DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICT 421
Query: 206 YNT----------------LFMAIN--NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
+N +F IN + PD + T + +NG E VF +
Sbjct: 422 FNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
V ET N LI + G + A ++ ++ + G+TPD+ TYN ++ + G
Sbjct: 482 RAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML-DAGVTPDLSTYNTVLAALARGGMW 540
Query: 308 QKANGLLLDMEETGLEPN 325
+++ +L +ME+ +PN
Sbjct: 541 EQSEKVLAEMEDGRCKPN 558
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 125/288 (43%), Gaps = 47/288 (16%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-------- 64
R+L + TP++ T+N+++ L G ++ ++ ++ C PN +T+ +L
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGK 573
Query: 65 -----ALVALNLFEEMVNEFGVICKPDVVTCTN---IIDGLCKDGFMMDQGMRPDVVTLN 116
+A ++ ++ V+ K V+ C+ + + + ++G PD+ TLN
Sbjct: 574 EIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLN 633
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSK 162
M + + +AN +L+ M +R P+ TYN+LM + +K
Sbjct: 634 SMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK 693
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G + D+ SYN +I YC++ + DA + EM + GI D TYN
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN--------------- 738
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
T+I + EA+ V + H C T N ++DG CK+ R
Sbjct: 739 --TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNR 784
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 149/365 (40%), Gaps = 72/365 (19%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R +L ++++ F+P++VT+NSLI +G + EA L ++ P+V T+
Sbjct: 329 RPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYT 388
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------- 106
TL A+++FEEM N CKP++ T I G +
Sbjct: 389 TLLSGFERAGKVESAMSIFEEMRN---AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445
Query: 107 ---GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
G+ PD+VT N + ++G E + + + M + P T+NTL
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTL---------- 495
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------- 213
I+ Y + + E A+++ R ML G+ D +TYNT+ A+
Sbjct: 496 -----------ISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSE 544
Query: 214 --------NNVPPDSHVYTTYIDGLYKNGFVLEAM-----KVFSAIGNHKCVLTIETCNC 260
P+ Y + + Y NG + M +V+S + + VL
Sbjct: 545 KVLAEMEDGRCKPNELTYCSLLHA-YANGKEIGLMHSLAEEVYSGVIEPRAVL----LKT 599
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L+ K L A F L + G +PD+ T N M+ + + KANG+L M+E
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKER-GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658
Query: 321 GLEPN 325
G P+
Sbjct: 659 GFTPS 663
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 155/387 (40%), Gaps = 77/387 (19%)
Query: 6 GGFVLLGRI--LMSCF--------TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCD 55
GF G++ MS F PN+ TFN+ IK G+ E ++F ++NV
Sbjct: 392 SGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 451
Query: 56 PNVITFNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---- 102
P+++T+NTL V +F+EM G + P+ T +I + G
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEM-KRAGFV--PERETFNTLISAYSRCGSFEQA 508
Query: 103 ------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
M+D G+ PD+ T N + L++ G E++ +L M PN TY +L+
Sbjct: 509 MTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHA 568
Query: 157 FAWWSK-GCRH----DVYSYNILINGYCKDRNV---------------EDAVSLCREMLS 196
+A + G H +VYS G + R V +A E+
Sbjct: 569 YANGKEIGLMHSLAEEVYS------GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622
Query: 197 EGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLE 238
G D TT N++ +M P Y + + ++ +
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+ ++ I I + N +I C+ R++ A IF M+N G+ PDV+TYN I
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSE-MRNSGIVPDVITYNTFI 741
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + ++A G++ M + G PN
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 52/337 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL--FEEMVNE 78
P++ T+ +L+ G G++ A +F+++ C PN+ TFN + N F EM+
Sbjct: 382 PDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKI 441
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
F I PD+VT ++ ++G M G P+ T N + S+
Sbjct: 442 FDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---WWSKG-----------CRHDVYS 170
G E+A + M+ V P+ TYNT++ A W + C+ + +
Sbjct: 502 CGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
Y L++ Y + + SL E+ S I A TL + +
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCS---------------- 605
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLT 288
K + EA + FS + I T N ++ GR ++ +L M+ G T
Sbjct: 606 -KCDLLPEAERAFSELKERGFSPDITTLNSMV---SIYGRRQMVAKANGVLDYMKERGFT 661
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P + TYN +++ + K+ +L ++ G++P+
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
+L IL P+++++N++I C R+ +A+R+F ++ P+VIT+NT +
Sbjct: 686 ILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYA 745
Query: 68 ALNLFEEMVNEFGVI-------CKPDVVTCTNIIDGLCK 99
A ++FEE + GV+ C+P+ T +I+DG CK
Sbjct: 746 ADSMFEEAI---GVVRYMIKHGCRPNQNTYNSIVDGYCK 781
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 38/193 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA-----LNLFE 73
F+P++ T NS++ + +A + + P++ T+N+L + E
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 74 EMVNE-FGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNL 122
E++ E KPD+++ +I C++ M D G+ PDV+T N +
Sbjct: 685 EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDR 182
+ D EEA ++ MI+ GCR + +YN +++GYCK
Sbjct: 745 AADSMFEEAIGVVRYMIKH---------------------GCRPNQNTYNSIVDGYCK-L 782
Query: 183 NVEDAVSLCREML 195
N +D L E L
Sbjct: 783 NRKDEAKLFVEDL 795
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 59/331 (17%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
IL + ++ FN L+ C EG I A +F + + P+V++FNTL
Sbjct: 115 EILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTL-------- 166
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
+N + + ++ +G M G++PDV T +V+ + L K+ KM++AN
Sbjct: 167 ---MNGY--------IRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
L + M+ + + PN T+ TL+DG +CK V+ A+ + +
Sbjct: 216 ELFDEMLDKGLVPNGVTFTTLIDG---------------------HCKSGRVDLAMEIYK 254
Query: 193 EMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 255 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEG 314
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ A + + L LI GLC+ GR A + ++ + GL PD TY
Sbjct: 315 DLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREML-SAGLKPDTGTY 373
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++I+ FCK+G + LL +M+ G P+
Sbjct: 374 TMIINEFCKKGDVWTGSKLLKEMQRDGHVPS 404
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +L PN VTF +LI G C GR+ A ++K++ P++IT+NTL
Sbjct: 217 LFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLI---- 272
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+G+ K D+ ++ID M +G++PD +T + D K+G +E
Sbjct: 273 ---------YGLCKKGDLKQAHDLIDE------MSMKGLKPDKITYTTLIDGCCKEGDLE 317
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
A + MIQ ++ + Y L+ G S G + D +Y ++I
Sbjct: 318 TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMII 377
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
N +CK +V L +EM +G TYN L
Sbjct: 378 NEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVL 411
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + ++L +P+++T+N+LI GLC +G + +A L ++++ P+ IT+
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITY 303
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------- 105
TL A + M+ E + D V T +I GLC++G +D
Sbjct: 304 TTLIDGCCKEGDLETAFEHRKRMIQEN---IRLDDVAYTALISGLCQEGRYLDAEKVLRE 360
Query: 106 ---QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN-PNTCTYNTLMDG 156
G++PD T ++ + K G + + LL+ M QRD + P+ TYN LM+G
Sbjct: 361 MLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM-QRDGHVPSVVTYNVLMNG 414
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVYTTYID 228
SY +I+ C + + +A SL + ++S + A+ + + D +V++ I
Sbjct: 4 SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 63
Query: 229 GLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLT 288
++GF+ +A++ + HK + +TC +++ + K+ K+ W + +++ G
Sbjct: 64 AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILE-CGYP 122
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +NI++H FCKEG + A + + + GL P+
Sbjct: 123 ASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPS 159
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 150/326 (46%), Gaps = 63/326 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L++ C EG + A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTL-----------ING 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + ++ +G M G +PDV T +++ + L K+GK++EAN L M
Sbjct: 181 Y--------IKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + PN T+ TL I+G+CK+ V+ A+ + ++MLS+G
Sbjct: 233 LDNGLVPNGVTFTTL---------------------IHGHCKNEKVDLAMEIYKQMLSQG 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M +N + PD YTT IDG K G + A+
Sbjct: 272 LSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIAL 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
++ + + L LI LC+ GR A D ML M + GL PD TY ++I
Sbjct: 332 ELRNKMIQESIRLDDVAYTALISCLCREGR---ASDAEKMLREMLSVGLKPDNGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
+ FCK+ + A+ LL +M+ G P
Sbjct: 389 NEFCKKRDSKTASKLLREMQRDGPLP 414
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G + N++ K+G+M A + + + + + P+ ++NTL++G+
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEG 190
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
A + G + DVY+Y+ILING CK+ +++A L EML G+
Sbjct: 191 FRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGL------------- 237
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P+ +TT I G KN V AM+++ + + + T N LI GLCK G LK
Sbjct: 238 ----VPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELK 293
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
D+ ++ N GL PD ++Y +I G CKEG
Sbjct: 294 QVHDLIDEMIMN-GLKPDKISYTTLIDGSCKEG 325
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 36/231 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L + S P++ T++ LI GLC EG++ EA LF ++ PN +T
Sbjct: 184 LGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVT 243
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
F TL +A+ ++++M+++ G+ PD++T +I GLCK G
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQ-GL--SPDLITYNTLIYGLCKKGELKQVHDLID 300
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DG 156
M+ G++PD ++ + D K+G +E A L MIQ + + Y L+ +G
Sbjct: 301 EMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREG 360
Query: 157 FA---------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
A S G + D +Y ++IN +CK R+ + A L REM +G
Sbjct: 361 RASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 93/175 (53%), Gaps = 20/175 (11%)
Query: 151 NTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
++ D W G R V S+N LINGY K + L EG R +
Sbjct: 156 QSVFDAITKW--GLRPSVVSFNTLINGYIKLGD-----------LDEGFRLKSA------ 196
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD + Y+ I+GL K G + EA ++F+ + ++ V T LI G CK +
Sbjct: 197 MHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEK 256
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A +I+ ++ + GL+PD++TYN +I+G CK+G+ ++ + L+ +M GL+P+
Sbjct: 257 VDLAMEIYKQML-SQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + + +A SL + ++S +G + + + + D +V+
Sbjct: 10 RHTLHSYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQRSDFYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + ++GFV +A++ F HK + +TC +++ L + K+ WD + +++
Sbjct: 70 SGLMIAYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++ FCKEG+ + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
Query: 130 EANCLLEVMIQRDVNPNTC-TYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVEDA 187
EA L++V++ R + + +++ +KG R D Y ++ L+ Y + V DA
Sbjct: 31 EAKSLIQVVVSRKGKDSASDVFEAILE-----TKGTQRSDFYVFSGLMIAYLESGFVRDA 85
Query: 188 VSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYIDG 229
V R IR T + + P + + +
Sbjct: 86 VQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQR 145
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K G + A VF AI ++ + N LI+G K+G L + + M G P
Sbjct: 146 FCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRL-KSAMHASGAQP 204
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DV TY+I+I+G CKEG+ +AN L +M + GL PN
Sbjct: 205 DVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPN 240
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 148/336 (44%), Gaps = 53/336 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P T+N I+ LC GRI +A L + P+V+++NTL + + F E
Sbjct: 377 PTTSTYNIYIRALCEFGRIDDARELLSSMAA----PDVVSYNTLMHGYIKMRKFVEASLL 432
Query: 79 FGVI----CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSK 124
F + P +VT +IDGLC+ G M Q + PDV+T + K
Sbjct: 433 FDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVK 492
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSKGCRHDVYS---- 170
+G + A + + M+++ + P+ Y T G F + D ++
Sbjct: 493 NGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLT 552
Query: 171 -YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
YN+ I+G CK N+E A+ R++ G+ PD YTT I G
Sbjct: 553 IYNVRIDGLCKVGNLEKAIEFQRKIFRVGL-----------------VPDHVTYTTVIRG 595
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ G A ++ + + + ++ T LI G K GRL+ A+ + M+ G+ P
Sbjct: 596 YLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQ-YSTEMKKRGVRP 654
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V+T+N ++HG CK G +A L MEE G+ PN
Sbjct: 655 NVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPN 690
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 140/307 (45%), Gaps = 44/307 (14%)
Query: 58 VITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------- 106
V T ++A L FE+M+ + G + P V C NI+ + +D MM++
Sbjct: 213 VYTKKSMAEKCLLSFEKMIRK-GFL--PSVRNC-NIVLRVLRDSRMMNKAQEVYETMVMH 268
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---- 162
G+ P V+T N M D+ K G +E + + M +R++ + TYN L++GF+ K
Sbjct: 269 GIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEA 328
Query: 163 ----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G YS+N LI GYCK ++A + EML+ GI +TYN A
Sbjct: 329 RRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRA 388
Query: 213 I--------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + PD Y T + G K +EA +F + +I T
Sbjct: 389 LCEFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTY 448
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDGLC+ G L+ A + M + + PDV+TY ++ GF K G A + +M
Sbjct: 449 NTLIDGLCESGNLEGAQRLKEE-MTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEML 507
Query: 319 ETGLEPN 325
G++P+
Sbjct: 508 RKGIKPD 514
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 162/399 (40%), Gaps = 93/399 (23%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT--------- 63
+++ F P++ N +++ L + +A +++ + + P VITFNT
Sbjct: 229 KMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAG 288
Query: 64 ---------LALVALNL-FEE-----MVNEFGVICKPDVV-----------------TCT 91
L + N+ F E ++N F K + +
Sbjct: 289 DLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFN 348
Query: 92 NIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+I+G CK G M++ G+ P T N+ L + G++++A LL M
Sbjct: 349 PLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM--- 405
Query: 142 DVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDA 187
P+ +YNTLM G+ K + +YN LI+G C+ N+E A
Sbjct: 406 -AAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGA 464
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
L EM S+ I D TY TL M + PD + YTT G
Sbjct: 465 QRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVG 524
Query: 230 LYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+ G +A ++ A +H LTI N IDGLCK+G L+ A + F + G
Sbjct: 525 ELRLGDSEKAFRLHEEMVAEDHHAPDLTI--YNVRIDGLCKVGNLEKAIE-FQRKIFRVG 581
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD VTY +I G+ ++G+ + A L +M L P+
Sbjct: 582 LVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPS 620
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 103/275 (37%), Gaps = 66/275 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G L + P+++T+ +L+KG G + A ++ ++ P+ +
Sbjct: 459 GNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAY 518
Query: 62 NTLAL---------VALNLFEEMVNE---------------------------------F 79
T + A L EEMV E F
Sbjct: 519 TTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIF 578
Query: 80 GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKME 129
V PD VT T +I G + G M+ + + P V+T V+ +K G++E
Sbjct: 579 RVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLE 638
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILI 175
+A M +R V PN T+N L+ G +G + YSY ILI
Sbjct: 639 QAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILI 698
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+ +C E+ V L +EML + I D T+ LF
Sbjct: 699 SKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALF 733
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 147/331 (44%), Gaps = 64/331 (19%)
Query: 15 LMSCFTP-NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
++ C P ++ FN L+ C EG I A +F + P+V++FNTL
Sbjct: 127 ILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ G M G+ PDV T V+ + L K+ KM+EAN
Sbjct: 178 --INGY--------IRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANE 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L M+ + + PN T+ TL+D G+CK V+ A+ + ++
Sbjct: 228 LFNEMLDKGLVPNGVTFTTLID---------------------GHCKSGRVDLALEIYKQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
ML +G D TYNTL M++ + PD YTT IDG K G
Sbjct: 267 MLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A ++ + L LI GLC+ GR A D ML M + GL P+ T
Sbjct: 327 LETAFELRKRMIEESIRLDDVAYTALISGLCQEGR---AVDAEKMLREMLSVGLKPENGT 383
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
Y ++I+GFCK+G + A+ LL +M+ G P
Sbjct: 384 YTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 150/333 (45%), Gaps = 53/333 (15%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
S F + ++ ++I L T RILEA L + ++ A +F ++
Sbjct: 7 STFRHTLHSYCTMIHFLSTHQRILEAKSLIQ----------IVVSRKGKDSASAVFAAIL 56
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM----EEAN 132
G + D+ + +I + GF+ D + L++ K +
Sbjct: 57 ETKGA-QRSDIYVFSGLITAYLESGFLRDA----------IECFRLTRKHKFWVPFDTCR 105
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--DVYSYNILINGYCKDRNVEDAVSL 190
+LE +++ Y L+ GF C + +Y +NIL++ +CK+ + A S+
Sbjct: 106 KVLEHLMK-------LKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSV 158
Query: 191 CREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYK 232
+ G+R ++NTL M + V PD + T I+GL K
Sbjct: 159 FDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCK 218
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVV 292
+ EA ++F+ + + V T LIDG CK GR+ +A +I+ +++ G +PD++
Sbjct: 219 ESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQ-GYSPDLI 277
Query: 293 TYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN +I+G C++G ++A L+++M GL+P+
Sbjct: 278 TYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPD 310
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 43/208 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L PN VTF +LI G C GR+ A ++K++ P++IT+NTL
Sbjct: 228 LFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLC 287
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A +L EM + G+ KPD +T T +IDG CK+G M+++ +R
Sbjct: 288 RKGDLKQARDLIVEMSMK-GL--KPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRL 344
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D V + L ++G+ +A +L M+ + P T
Sbjct: 345 DDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGT--------------------- 383
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEG 198
Y ++ING+CK +V+ A L +EM +G
Sbjct: 384 YTMIINGFCKQGDVKTASKLLKEMQRDG 411
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 63/327 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L+ G EG I A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTL-----------MNG 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + ++ +G M G++PDV T +V+ + L K+ KM++AN L + M
Sbjct: 181 Y--------IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + + PN T+ TL+D G+CK+ V+ A+ + ++MLS+
Sbjct: 233 LDKGLVPNGVTFTTLID---------------------GHCKNGRVDLAMEIYKQMLSQS 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M + + PD YTT IDG K G + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAF 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
+ + L LI GLC+ GR + D ML M + GL P++ TY ++I
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPEIGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK+G + LL +M+ G +P+
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYKPS 415
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 44/247 (17%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + ++ G + N++ K+G++ A + + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML +G+ P+ +TT IDG KNG V AM+++
Sbjct: 223 DDANVLFDEMLDKGL-----------------VPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + + T N LI GLCK G LK A D+ M+M+ GL PD +TY +I G CK
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMK--GLKPDKITYTTLIDGNCK 323
Query: 304 EGQHQKA 310
EG + A
Sbjct: 324 EGDLETA 330
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA 68
VL +L PN VTF +LI G C GR+ A ++K++ P++IT+NTL
Sbjct: 227 VLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLI--- 283
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
+G+ K D+ ++ID M+ +G++PD +T + D K+G +
Sbjct: 284 ----------YGLCKKGDLKQAQDLIDE------MIMKGLKPDKITYTTLIDGNCKEGDL 327
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
E A + MI+ ++ + Y L+ G S G + ++ +Y ++
Sbjct: 328 ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATT 205
IN +CK +V L +EM +G + T
Sbjct: 388 INEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVY 223
RH + SY +I+ C + + +A +L + ++S + A+ + + D +V+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + ++
Sbjct: 70 SGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++HGF KEG+ + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPS 170
>gi|414876958|tpg|DAA54089.1| TPA: hypothetical protein ZEAMMB73_851506 [Zea mays]
gi|414876959|tpg|DAA54090.1| TPA: hypothetical protein ZEAMMB73_851506 [Zea mays]
Length = 1090
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 150/338 (44%), Gaps = 49/338 (14%)
Query: 2 GRASGGFVLLGRI--LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI 59
G+A G ++ S F P +VT S++ L EGR E A L +++ + + +
Sbjct: 182 GKAGAGLHFYDKVKRQFSGFDPGLVTLTSVVHALGLEGRTGEMAELMREMECKGMNADAV 241
Query: 60 TFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMT 119
+ + MV+ + ++ +++GL + M+ +G+ DV+ +
Sbjct: 242 FYGS-----------MVHGY--------MSRGFLMEGLREHRSMLGKGITADVINYTTVI 282
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----AW----------WSKGCR 165
D L ++G +E+ L+ M++ D PN TY +L+ GF W G
Sbjct: 283 DGLCREGSVEKVTGFLDEMVRVDAKPNLITYTSLVGGFCKRDRWEDAFSIVRKLEQTGMV 342
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D Y Y+ILI+ CK +++ A SL EM ++GI+A TYN + +
Sbjct: 343 VDEYVYSILIDSLCKMDDLDRAFSLLTEMENKGIKASIITYNAIINGLCKAGHCEKAVEI 402
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
V D+ Y+T + G G + M + + + + TCN LI L I ++
Sbjct: 403 SEGVAADNFTYSTLLHGYINRGDITGVMAMKDRLEGSGISMDVVTCNVLIKALFMINKVN 462
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
AW +FH M GL P+ +TY+ +I CK Q KA
Sbjct: 463 DAWSLFHK-MPEIGLRPNTITYHTIIDKLCKAEQVDKA 499
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
MD+G P V L L K G++ +A L+V Q GF+
Sbjct: 680 MDKGSVP-VSVLRGAVFALKKQGEVLDACNFLKVAEQ--------------SGFSV---- 720
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
D+ Y+I+++G CK +E A+ LC M EG + P+ ++
Sbjct: 721 ---DLTMYSIVVDGLCKGGYLEKALDLCEGMKKEGFQ-----------------PNIVIH 760
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ + GL G + EA ++F + N K + TI T LI LC+ G L A +F M
Sbjct: 761 NSVLSGLCHQGCLTEAFRLFDYLENSKMLPTIITYTILIGALCREGLLDDADQLFQK-MS 819
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P YN++I G C G KA L+ MEE + P+
Sbjct: 820 TKGIKPTTRVYNLLISGHCNFGLTGKALELMSHMEELFILPD 861
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMDQ------GMRPDVVTL 115
AL +F+ M N C+ D C++I+ G + G D+ G P +VTL
Sbjct: 152 ALRVFDIMTNRG---CQVDDRICSSIVSGFSRTGKAGAGLHFYDKVKRQFSGFDPGLVTL 208
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILI 175
+ L +G+ E L+ M + +N + Y +++ G+ S L+
Sbjct: 209 TSVVHALGLEGRTGEMAELMREMECKGMNADAVFYGSMVHGY-----------MSRGFLM 257
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
G + R+ ML +GI AD IN YTT IDGL + G
Sbjct: 258 EGLREHRS----------MLGKGITADV---------IN--------YTTVIDGLCREGS 290
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
V + + + T L+ G CK R + A+ I L Q G+ D Y+
Sbjct: 291 VEKVTGFLDEMVRVDAKPNLITYTSLVGGFCKRDRWEDAFSIVRKLEQT-GMVVDEYVYS 349
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
I+I CK +A LL +ME G++ +
Sbjct: 350 ILIDSLCKMDDLDRAFSLLTEMENKGIKAS 379
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 49/242 (20%)
Query: 86 DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
D+ + ++DGLCK G+ M +G +P++V N + L G + EA L
Sbjct: 721 DLTMYSIVVDGLCKGGYLEKALDLCEGMKKEGFQPNIVIHNSVLSGLCHQGCLTEAFRLF 780
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREML 195
+ + + P + +Y ILI C++ ++DA L ++M
Sbjct: 781 DYLENSKMLPT---------------------IITYTILIGALCREGLLDDADQLFQKMS 819
Query: 196 SEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
++GI+ P + VY I G G +A+++ S + +
Sbjct: 820 TKGIK-----------------PTTRVYNLLISGHCNFGLTGKALELMSHMEELFILPDC 862
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T +I+GLC G + A F+ ++ + PD V + +I G +G+ +++ G+L
Sbjct: 863 FTLGAIINGLCLKGETEAALRFFNE-YRHRNIDPDFVGFMSLIKGLYAKGRMEESRGILR 921
Query: 316 DM 317
+M
Sbjct: 922 EM 923
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 126/329 (38%), Gaps = 49/329 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F L + S P ++T+ LI LC EG + +A +LF+K++ P +N L
Sbjct: 776 AFRLFDYLENSKMLPTIITYTILIGALCREGLLDDADQLFQKMSTKGIKPTTRVYNLLIS 835
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR- 109
AL L M F + PD T II+GLC G F + R
Sbjct: 836 GHCNFGLTGKALELMSHMEELFIL---PDCFTLGAIINGLCLKGETEAALRFFNEYRHRN 892
Query: 110 --PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD 167
PD V + L G+MEE+ +L M Q C T + S G +
Sbjct: 893 IDPDFVGFMSLIKGLYAKGRMEESRGILREMFQ-------CKEVTEL----INSVGDKIQ 941
Query: 168 VYSYNILINGYCKDRNVEDAVSLCRE----MLSEGIRADATTYNTLFMAINNVPPDSHVY 223
S L++ C +++ V++ E +LS +++ +YN L I V Y
Sbjct: 942 AESLVDLLSSACDQGRIDEIVTILNEVGLMLLSS---SNSISYNAL-AHIKKVQKTEDAY 997
Query: 224 TTYIDGLYKNGFVLEAMKV-FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
+ + +G +A V + N C + +IDG + + DI + +
Sbjct: 998 GS----MSNSG---QASPVAYDISSNSLCRSSDGKVQSMIDGDDSLSKSSGDTDIDYRNL 1050
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
D +Y I C +G+ KAN
Sbjct: 1051 LGKSFNDDFESYYAGIASLCSKGELLKAN 1079
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 119/321 (37%), Gaps = 88/321 (27%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMV 76
S F+ ++ ++ ++ GLC G + + AL+L E M
Sbjct: 716 SGFSVDLTMYSIVVDGLCKGGYLEK--------------------------ALDLCEGMK 749
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDG 126
E +P++V +++ GLC G ++ + M P ++T ++ L ++G
Sbjct: 750 KEG---FQPNIVIHNSVLSGLCHQGCLTEAFRLFDYLENSKMLPTIITYTILIGALCREG 806
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDG---FAWWSKGCR-----------HDVYSYN 172
+++A+ L + M + + P T YN L+ G F K D ++
Sbjct: 807 LLDDADQLFQKMSTKGIKPTTRVYNLLISGHCNFGLTGKALELMSHMEELFILPDCFTLG 866
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
+ING C E A+ E N+ PD + + I GLY
Sbjct: 867 AIINGLCLKGETEAALRFFNEYRHR-----------------NIDPDFVGFMSLIKGLYA 909
Query: 233 NGFVLEAMKVFSAIGNHKCV----------LTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
G + E+ + + K V + E+ L+ C GR+ D ++
Sbjct: 910 KGRMEESRGILREMFQCKEVTELINSVGDKIQAESLVDLLSSACDQGRI----DEIVTIL 965
Query: 283 QNPGL----TPDVVTYNIMIH 299
GL + + ++YN + H
Sbjct: 966 NEVGLMLLSSSNSISYNALAH 986
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 152/338 (44%), Gaps = 73/338 (21%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
IL + ++ FN L+ C EG I A +F + + P+V++FNTL +N +
Sbjct: 126 EILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTL----MNGY 181
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLNVMTDNLSKDGK 127
+M G+ +GF M G +PDV T +V+ + L K+ K
Sbjct: 182 IKM--------------------GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESK 221
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDA 187
M+EA+ L + M+++ + PN T+ TL+DG +CK+ ++ A
Sbjct: 222 MDEAHELFDEMLEKGLVPNGVTFTTLIDG---------------------HCKNGKLDLA 260
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ + +++LS+G+ D TYNTL M++ + PD YTT IDG
Sbjct: 261 MEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDG 320
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGL 287
K G + A + + L LI GLCK GR + D ML M + GL
Sbjct: 321 SCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGR---SVDAEKMLREMLSVGL 377
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TY I+++ FCK G + LL +M+ G P+
Sbjct: 378 KPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPS 415
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 37/205 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L PN VTF +LI G C G++ A ++K++ P++IT+NTL
Sbjct: 228 LFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFC 287
Query: 67 --VALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L ++++E + KPD +T T +IDG CK+G M+++ +R D V
Sbjct: 288 KKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDV 347
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ L K+G+ +A +L M+ + P++ T Y I
Sbjct: 348 VYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGT---------------------YTI 386
Query: 174 LINGYCKDRNVEDAVSLCREMLSEG 198
++N +CK+ +V L +EM +G
Sbjct: 387 VMNEFCKNGDVNTGSKLLKEMQRDG 411
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH ++SY +I+ C + + +A SL + ++S +G + + + + D +V+
Sbjct: 10 RHTLHSYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ F HK + +TC ++D L K+ K+ W + +++
Sbjct: 70 SGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCKEG+ + A + + + GL+P+
Sbjct: 130 C-GYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPS 170
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 152/364 (41%), Gaps = 71/364 (19%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F+L + ++ T+ ++ C G I +A + F ++ C PNV+T+ L
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561
Query: 67 VALN---------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------------- 104
L LFE M++E C P++VT + +IDG CK G M
Sbjct: 562 AYLKAKKVSYANELFETMLSEG---CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSK 618
Query: 105 --------------DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
D RP+VV + D K ++EEA LL+ M PN Y
Sbjct: 619 DVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVY 678
Query: 151 NTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
+ L+DG K G +Y+Y+ LI+ Y K + + A + +ML
Sbjct: 679 DALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 738
Query: 197 EGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
N+ P+ +YT IDGL K G EA K+ + C +
Sbjct: 739 -----------------NSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 781
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T +IDG +IG+++ ++ M + G+ P+ VTY ++I CK G A+ LL +
Sbjct: 782 TYTAMIDGFGRIGKIETCLELLER-MGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 840
Query: 317 MEET 320
M++T
Sbjct: 841 MKQT 844
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 160/398 (40%), Gaps = 78/398 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEG-----RILE-AARLFKKL---NVF 52
G S + LL +++ TP V +N LI +C + +LE A + + ++ V
Sbjct: 386 GDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVV 445
Query: 53 CCDPNVITFNTLALVA------LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD-----G 101
NV +F A ++ EM+ + G I PD T + ++ LC
Sbjct: 446 LNKINVSSFTRCLCSAGKYEKAFSVIREMIGQ-GFI--PDTSTYSKVLGYLCNASKMELA 502
Query: 102 FMMDQGMR-----PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
F++ + M+ DV T +M D+ K G +E+A M + PN TY L+
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHA 562
Query: 157 F--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
+ S+GC ++ +Y+ LI+G+CK +E A + M D
Sbjct: 563 YLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPD 622
Query: 203 ATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
Y + N+ P+ +Y +DG K V EA K+ A+ C + LI
Sbjct: 623 VDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALI 682
Query: 263 DGLCKIGRL-----------------------------------KIAWDIFHMLMQNPGL 287
DGLCK+G+L +A + +++N
Sbjct: 683 DGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN-SC 741
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VV Y MI G CK G+ +A L+ MEE G +PN
Sbjct: 742 APNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 779
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 50/344 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-----ALVALNLFEEM 75
PN+V + +L+ G C R+ EA +L +++ C+PN I ++ L + L+ +E+
Sbjct: 638 PNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 697
Query: 76 VNEFGVICKPDVV-TCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSK 124
E P + T +++ID K M++ P+VV M D L K
Sbjct: 698 KAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 757
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
GK +EA L+++M ++ PN TY ++DGF SKG + +
Sbjct: 758 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVT 817
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAIN---------------- 214
Y +LI+ CK+ ++ A +L EM A Y + N
Sbjct: 818 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQD 877
Query: 215 NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT--IETCNCLIDGLCKIGRLK 272
+ P +Y +D L K + A+++ + L T N LI+ LC ++
Sbjct: 878 DTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVD 937
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
A+ +F M G+ P++ T+ +I G + + +A LLLD
Sbjct: 938 KAFRLFSE-MSKKGVIPEMQTFCSLIKGLFRNSKISEAL-LLLD 979
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 58/330 (17%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F P+ V + LI GLC EA ++ C PNV+T++TL LN
Sbjct: 298 FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN-------- 349
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
K + C +++ MM +G P N + G A LL+ M
Sbjct: 350 -----KKQLGRCKRVLN------MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM 398
Query: 139 IQRDVNPNTCTYNTLMDG-----------FAWWSKGCRHDVYSYNILING---------Y 178
++ P YN L+ ++ ++ + +++N
Sbjct: 399 VKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCL 458
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C E A S+ REM+ +G D +TY+ + M + D
Sbjct: 459 CSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADV 518
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ YT +D K G + +A K F+ + C + T LI K ++ A ++F
Sbjct: 519 YTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFET 578
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ + G P++VTY+ +I G CK GQ +KA
Sbjct: 579 ML-SEGCLPNIVTYSALIDGHCKAGQMEKA 607
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 148/368 (40%), Gaps = 69/368 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L R+ + PN+VT+++L+ G + ++ R+ + + C P+ FN+L
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 68 -------ALNLFEEMVN------------EFGVIC-KPDVVTCTNIIDGLCKDGFMMDQG 107
A L ++MV G IC D ++C + M+ G
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATG 443
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----- 162
+ + + ++ T L GK E+A ++ MI + P+T TY+ ++ SK
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAF 503
Query: 163 ---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G DVY+Y I+++ +CK +E A EM G + TY L
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI--- 560
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
H Y Y N ++F + + C+ I T + LIDG CK G+++
Sbjct: 561 -------HAYLKAKKVSYAN-------ELFETMLSEGCLPNIVTYSALIDGHCKAGQMEK 606
Query: 274 AWDIFHMLMQNPGL----------------TPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
A IF + + + P+VV Y ++ GFCK + ++A LL M
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAM 666
Query: 318 EETGLEPN 325
G EPN
Sbjct: 667 SMEGCEPN 674
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 51/276 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+L ++L + PN+V + +I GLC G+ EA +L + + C PNV+T+
Sbjct: 732 VLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA------ 785
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ FG I K + TC +++ M +G+ P+ VT V+ D+ K+G ++
Sbjct: 786 -----MIDGFGRIGK--IETCLELLER------MGSKGVAPNYVTYRVLIDHCCKNGALD 832
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCRHDVYS---------YNILING 177
A+ LLE M Q + Y +++GF S G ++ Y +L++
Sbjct: 833 VAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDN 892
Query: 178 YCKDRNVEDAVSLCREM--LSEGIRADATTYNTLF------------------MAINNVP 217
K + +E A+ L E+ S + ++TYN+L M+ V
Sbjct: 893 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVI 952
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
P+ + + I GL++N + EA+ + I + C L
Sbjct: 953 PEMQTFCSLIKGLFRNSKISEALLLLDFISHMVCPL 988
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 133/373 (35%), Gaps = 85/373 (22%)
Query: 5 SGGFVL----LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
SG F + LGR+ F P+ T+N LI+ L C D +
Sbjct: 213 SGSFSIALEELGRLKDFRFRPSRSTYNCLIQAF---------------LKADCLDSASLV 257
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMRPDVV 113
++L L + D T LCK G M + PD V
Sbjct: 258 HREMSLANLRM--------------DGFTLRCYAYSLCKVGKWREALTLMETENFVPDTV 303
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
+ L + EEA L M PN TY+TL+ G
Sbjct: 304 FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
+GC +N L++ YC + A L ++M+ G YN L I ++ D
Sbjct: 364 MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNIL---IGSICGD 420
Query: 220 SHVYTTYI--------DGLYKNGFVLEAMKVFS------AIGNHKCVLTI---------- 255
+ ++ + G VL + V S + G ++ ++
Sbjct: 421 KDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFI 480
Query: 256 ---ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
T + ++ LC ++++A+ +F M+ GL DV TY IM+ FCK G ++A
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEE-MKRGGLVADVYTYTIMVDSFCKAGLIEQARK 539
Query: 313 LLLDMEETGLEPN 325
+M E G PN
Sbjct: 540 WFNEMREVGCTPN 552
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 145/330 (43%), Gaps = 72/330 (21%)
Query: 21 PNMVTFNSLIKGLCTEG--RILEAARLFKKLNVFCCDPNVITFNTLALV---------AL 69
PN+VT+N++I C +G + A+ F ++ P+ ITFN+L V A
Sbjct: 301 PNLVTYNAVIDA-CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAAR 359
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
NLF+EM N + + DV + N + D + K G+M+
Sbjct: 360 NLFDEMTN----------------------------RRIEQDVFSYNTLLDAICKGGQMD 391
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILI 175
A +L M + + PN +Y+T++DGFA + G D SYN L+
Sbjct: 392 LAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLL 451
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
+ Y K E+A+ + REM S GI+ D TYN L + G K G
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNAL-----------------LGGYGKQGK 494
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYN 295
E KVF+ + + + T + LIDG K G K A +IF ++ GL DVV Y+
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF-KSAGLRADVVLYS 553
Query: 296 IMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I CK G A L+ +M + G+ PN
Sbjct: 554 ALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 56/316 (17%)
Query: 27 NSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI-- 82
+++I L G++ A R+F+ V F+ L A L EE ++ F +
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 83 --CKPDVVTCTNIIDGLCKDGFMMDQ-----------GMRPDVVTLNVMTDNLSKDGKME 129
+P++VT +ID K G Q G++PD +T N + S+ G E
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVS 189
A L + M R + DV+SYN L++ CK ++
Sbjct: 357 AARNLFDEMTNRRIE---------------------QDVFSYNTLLDAICKGGQMD---- 391
Query: 190 LCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L E+L++ M + + P+ Y+T IDG K G EA+ +F +
Sbjct: 392 LAFEILAQ-------------MPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
L + N L+ K+GR + A DI M + G+ DVVTYN ++ G+ K+G++ +
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILRE-MASVGIKKDVVTYNALLGGYGKQGKYDE 497
Query: 310 ANGLLLDMEETGLEPN 325
+ +M+ + PN
Sbjct: 498 VKKVFTEMKREHVLPN 513
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 150/337 (44%), Gaps = 52/337 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
F +L ++ + PN+V+++++I G GR EA LF ++ + +++NTL
Sbjct: 393 AFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTL-- 450
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
L+++ + V +D L + M G++ DVVT N + K G
Sbjct: 451 --LSIYTK------------VGRSEEALDILRE---MASVGIKKDVVTYNALLGGYGKQG 493
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYN 172
K +E + M + V PN TY+TL+DG++ + S G R DV Y+
Sbjct: 494 KYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYS 553
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
LI+ CK+ V AVSL EM EGI + TYN++ A T Y
Sbjct: 554 ALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSA------TMDRSADYS 607
Query: 233 NG----FVLEAMKVFSAIGNHKCV-----LTIETCNCLIDGLCKIGRLKIA--WDIFHML 281
NG F A+ + ++ + LT E+ N C+ G +++ ++F +
Sbjct: 608 NGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKD-CEEGMQELSCILEVFRKM 666
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
Q + P+VVT++ +++ + + A+ LL ++
Sbjct: 667 HQLE-IKPNVVTFSAILNACSRCNSFEDASMLLEELR 702
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 39/180 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR+ +L + ++VT+N+L+ G +G+ E ++F ++ PN++T
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLT 516
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRP 110
++TL IDG K G + G+R
Sbjct: 517 YSTL-----------------------------IDGYSKGGLYKEAMEIFREFKSAGLRA 547
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
DVV + + D L K+G + A L++ M + ++PN TYN+++D F + R YS
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYS 607
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 115/429 (26%), Positives = 173/429 (40%), Gaps = 124/429 (28%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + R+L S P++VT+NSLI GLC R+ +A + ++L PN IT++
Sbjct: 60 RPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYS 119
Query: 63 TLAL---------VALNLFEEMVNEFGVICK----------------------------- 84
TL + A L EM+ G +C
Sbjct: 120 TLVIWNCRRRRLDQARGLIREMILR-GSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEM 178
Query: 85 ------PDVVTCTNIIDGLCKDGFM---------MDQG-MRPDVVTLNVMTDNLSKDGKM 128
PDVVT I GLCK G + MD+G + PDVVT + L K ++
Sbjct: 179 IESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRI 238
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------GCRHDVY--- 169
++A + + M++R P++ TY+ ++D + ++ GC +VY
Sbjct: 239 DDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHN 298
Query: 170 --------------------------------SYNILINGYCKDRNVEDAVSLCREMLSE 197
SYN +I+G CK NV+DA L R+ML
Sbjct: 299 AFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDS 358
Query: 198 GIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI-GNHKCVLTIE 256
G PD + T I G K G + +A ++ + + CV +
Sbjct: 359 GC----------------CKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVV 402
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N LIDG K G LK A + MQ G P+VVTY +I+G+ K G +++A L +
Sbjct: 403 TYNTLIDGQSKFGSLKQA-KLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDE 461
Query: 317 MEETGLEPN 325
M G P+
Sbjct: 462 MSAKGCFPD 470
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 144/356 (40%), Gaps = 82/356 (23%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++VT+ +LI GLC G + A L +K+ C PNV+T+
Sbjct: 6 YDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTY----------------- 48
Query: 79 FGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMTDNLSKDGKM 128
T +IDGLCK D M+ G PD+VT N + L +M
Sbjct: 49 ------------TALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRM 96
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD-----------------VYSY 171
++A +L+ +++ PN TY+TL+ W + R D + Y
Sbjct: 97 DDAGLVLQELVRNGFAPNHITYSTLV---IWNCRRRRLDQARGLIREMILRGSVCNLVVY 153
Query: 172 NILINGYCKDRNVEDAVSLCR---EMLSEGIRADATTYNTLF------------------ 210
I G+C+ R + + CR EM+ G D TYNT
Sbjct: 154 IDCIFGFCEAR-CQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEE 212
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M +PPD + + I GL K + +A +VF + CV T + ++D L + R
Sbjct: 213 MDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANR 272
Query: 271 LKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L ++ HM G +V T+N I C+ G+ A +LL M E+G PN
Sbjct: 273 LDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPN 328
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 163/409 (39%), Gaps = 89/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +L + P++VTF S+I GLC RI +A ++FK + C P+ +T+
Sbjct: 201 GKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTY 260
Query: 62 -----NTLALVALNLFEEMV-----------------NEF-GVICK-------------- 84
N L+ +E++ N F G +C+
Sbjct: 261 SIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGM 320
Query: 85 ------PDVVTCTNIIDGLCKDG----------FMMDQG-MRPDVVTLNVMTDNLSKDGK 127
P++++ +IDGLCK G M+D G +PDV+ N + K G+
Sbjct: 321 IESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGR 380
Query: 128 MEEANCLLEVMIQRDV-NPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYN 172
+ +A+ LL M +++ P+ TYNTL+DG + + GC+ +V +Y
Sbjct: 381 LSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYA 440
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV---------------- 216
LINGY K E+A SL EM ++G D TYNT+ A +
Sbjct: 441 ALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNK 500
Query: 217 ----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD+ Y IDG + + + + + T N LI L + +
Sbjct: 501 TSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVP 560
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+ M + P +N ++ F + G A ++ +M E G
Sbjct: 561 SKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKG 609
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 30/237 (12%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G VVT + D L K G ++ A LL+ M PN TY L+DG +
Sbjct: 1 MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
GC D+ +YN LI+G C ++DA + +E++ G + TY+T
Sbjct: 61 PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
L ++ L + ++ M + ++ N V+ I+ + C+
Sbjct: 121 LV-----------IWNCRRRRLDQARGLIREMILRGSVCN--LVVYIDCIFGFCEARCQS 167
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R + D M+ G PDVVTYN I G CK G+ K +L +M+ G+ P+
Sbjct: 168 SRYE-CRDGDEMI--ESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPD 221
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 161/394 (40%), Gaps = 92/394 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G AS ++ TP +VT+ SLI G C EG +A +++ ++ PN T
Sbjct: 275 LGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYT 334
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
F + L N+ E + FG M ++ + P VT NVM
Sbjct: 335 FTAIISGLCRANMMAEAIRLFGE---------------------MKERKIMPSEVTYNVM 373
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-----AWWSKGCRHDVYS--- 170
+ + G + EA LL+ M+ + P+T TY L+ G +K D++
Sbjct: 374 IEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHH 433
Query: 171 ------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
Y+ L++GYCK+ +DAVS CR M+ G+ D Y L
Sbjct: 434 KLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFG 493
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M + + PD+ +YT ID K G + EA ++ + + C+ + T LI+GLC
Sbjct: 494 LLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLC 553
Query: 267 KI-----------------------------------GRLKIAWDIFHMLMQNPGLTPDV 291
K G ++ A + H +++ G
Sbjct: 554 KAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK--GFLATT 611
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V+YNI+I GFC+ G+ ++A LL M + + P+
Sbjct: 612 VSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 56/340 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S F LL ++ F P+ T+ LI GLC+ GR+ EA L+ N + +
Sbjct: 381 GNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCY 440
Query: 62 NTL--ALVALNLFEEMVNEFGVICKP----DVVTCTNIIDGLCKD----------GFMMD 105
+ L F++ V+ V+ + D+V +IDG ++ M +
Sbjct: 441 SALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHN 500
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
G+RPD V M D SK G ++EA L ++M+ +GC
Sbjct: 501 HGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVD---------------------EGCL 539
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
+V +Y LING CK ++ A L +E L +++V P+ Y
Sbjct: 540 PNVVTYTALINGLCKAGLMDKAELLSKETL-----------------VSDVTPNHITYGC 582
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
++D L + G + +A+++ A+ T+ + N LI G C++G+++ A + H + N
Sbjct: 583 FLDHLTRGGNMEKAVQLHHAMLKGFLATTV-SYNILIRGFCRLGKIEEATKLLHGMTDND 641
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD +TY+ +I+ CK Q+A L M + GL+P+
Sbjct: 642 IL-PDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPD 680
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 138/346 (39%), Gaps = 60/346 (17%)
Query: 12 GRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA----- 65
R++ C P + T ++L+ GL R + LF + P++ ++ +
Sbjct: 84 SRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCE 143
Query: 66 LVALNLFEEMVN--EFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
L N +EM++ EF CK +V +I GLCK +M +G+ +VV
Sbjct: 144 LKDFNKAKEMIHWMEFNQ-CKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVV 202
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AW 159
T GK EA L + M ++ + N TY+ L+D F
Sbjct: 203 TYY---------GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKM 253
Query: 160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPD 219
VY YN LINGYCK N A EM+ +G+ TY +L
Sbjct: 254 TKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSL---------- 303
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
I G G +A KV++ + T +I GLC+ + A +F
Sbjct: 304 -------ISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFG 356
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ + P VTYN+MI G C+ G +A LL +M G P+
Sbjct: 357 E-MKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPD 401
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 24/265 (9%)
Query: 84 KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
KP V ++ L M D + P+V TL+ + + L + + + L + ++ +V
Sbjct: 68 KPSHVDKVLMMLSLNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANV 127
Query: 144 NPNTCTYNTLMDGF-------------AWWS-KGCRHDVYSYNILINGYCKDRNVEDAVS 189
P+ Y+ ++ W C+ + YN+LI+G CK R + +A+
Sbjct: 128 QPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALE 187
Query: 190 LCREMLSEGIRADATTYNTLF---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ ++ +G+ A+ TY F M + + Y+ ID + G + A+
Sbjct: 188 IKNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAI 247
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ T+ N LI+G CK+G A F ++ + GLTP VVTY +I G
Sbjct: 248 GFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMI-DKGLTPTVVTYTSLISG 306
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+C EG+ KA + +M G+ PN
Sbjct: 307 YCNEGEWHKAFKVYNEMTAKGISPN 331
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 34/199 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
PN+VT+ +LI GLC G + +A L K+ V PN IT+
Sbjct: 540 PNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYG------------------ 581
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
C D +T ++ + M +G V+ N++ + GK+EEA LL M
Sbjct: 582 --CFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTD 639
Query: 141 RDVNPNTCTYNT----------LMDGFAWWS----KGCRHDVYSYNILINGYCKDRNVED 186
D+ P+ TY+T L + W KG + D +Y+ L++G C +E
Sbjct: 640 NDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEK 699
Query: 187 AVSLCREMLSEGIRADATT 205
A L EM+ G+R++ T
Sbjct: 700 AFELRDEMIRRGMRSNHVT 718
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 170/392 (43%), Gaps = 90/392 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
TP++VTF ++I C +G ++EA LF + PNV+ +NTL A
Sbjct: 216 TPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANM 275
Query: 71 LFEEMVNEFGVICKPDVVTCT----------------------------------NI-ID 95
L+EEM ++ PD T NI +
Sbjct: 276 LYEEMKSK---AVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVS 332
Query: 96 GLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
GLC G+ M+++G+ P VV N + S+ G E+A +M++ + P
Sbjct: 333 GLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFP 392
Query: 146 NTCTYNTLMDGFA--WWSKGCRHDVY------------SYNILINGYCKDRNVEDAVSLC 191
++ T ++L+ G + W + R +Y ++ +L++GY + +V A SL
Sbjct: 393 SSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLW 452
Query: 192 REMLSEGIRADATTYNT------------------LFMAINNVPPDSHVYTTYIDGLYKN 233
EM GI DA ++ L M+ P++ VY + I G +
Sbjct: 453 NEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNS 512
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + EA+ + + + I T N +I+GLCK GR+K A D+F M + GL PD+VT
Sbjct: 513 GRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRN-MHHTGLIPDIVT 571
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I G+CK + ++ M TG +P+
Sbjct: 572 YNTLIDGYCKAFDTVSTDEVVNKMYATGWDPD 603
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 147/386 (38%), Gaps = 90/386 (23%)
Query: 26 FNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEEMV 76
FN++I G C +G + L + F C P+V +N L AL M+
Sbjct: 152 FNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMI 211
Query: 77 NEFGVICKPDVVTCTNIIDGLCKDGFMMD-----QGMR-----PDVVTLNVMTDNLSKDG 126
+ C P +VT +I+ C G MM+ GM+ P+VV N + + K
Sbjct: 212 DNG---CTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKAR 268
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHD--------------VYSYN 172
+ +AN L E M + V P+ T+N L+ G + + D YN
Sbjct: 269 DIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYN 328
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------------- 210
I ++G C +++A+ +ML +GI +N++
Sbjct: 329 ICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKF 388
Query: 211 -------------------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
M + +P + +T +DG ++ G V A
Sbjct: 389 GLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGA 448
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+++ + + I+GL +G + A+D+F + M G P+ YN +I
Sbjct: 449 YSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVF-LQMSKKGFMPNNFVYNSLIR 507
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GFC G+ Q+A L +M GL P+
Sbjct: 508 GFCNSGRLQEALMLEREMARKGLLPD 533
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 147/351 (41%), Gaps = 56/351 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
L +L TP +V FNS+I G +A + ++ + F P+ +T ++L +
Sbjct: 346 FLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLS 405
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A +L EM+ E I K T ++DG + G M +G+ P
Sbjct: 406 KLWRLQEARDLLYEMIVEGLPINK---AAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHP 462
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D V + + LS G ++EA + M ++ PN YN+L+ GF
Sbjct: 463 DAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLE 522
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KG D+++ NI+ING CK+ ++ A + R M G+ D TYNTL
Sbjct: 523 REMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKA 582
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M PD Y + GL + A+ + + + V T
Sbjct: 583 FDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTY 642
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
N +++G+C L+ A + L++ P+VVT N+++ FCK+G +K
Sbjct: 643 NTVMNGVC-TDVLERAMIVTAKLLK-MAFVPNVVTANLLLSHFCKQGMPEK 691
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 53/284 (18%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG +G + L + P+ V F++ I GL G + EA +F +++ PN
Sbjct: 442 MGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFV 501
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+N+L N + + L + M +G+ PD+ T N++ +
Sbjct: 502 YNSLIRGFCN-------------------SGRLQEALMLEREMARKGLLPDIFTTNIIIN 542
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRH 166
L K+G+M+ A+ + M + P+ TYNTL+DG+ ++ G
Sbjct: 543 GLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDP 602
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D+ +YNI ++G C R + AV + E++S G+ D TYNT+ +N V D
Sbjct: 603 DITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTV---MNGVCTD------- 652
Query: 227 IDGLYKNGFVLE-AMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
VLE AM V + + V + T N L+ CK G
Sbjct: 653 ---------VLERAMIVTAKLLKMAFVPNVVTANLLLSHFCKQG 687
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 36/232 (15%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G M + G+RP + ++ L + G LL MI + P +N ++ GF
Sbjct: 103 GRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFC-- 160
Query: 161 SKG----------------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADAT 204
KG C+ DVY+YNILIN YC DA+ R
Sbjct: 161 RKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMR------------ 208
Query: 205 TYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
FM N P + T I+ G ++EA +F + + + N L++G
Sbjct: 209 -----FMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNG 263
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
K + A ++ + M++ + PD T+NI++ G + G+ + + LL D
Sbjct: 264 YVKARDIGQA-NMLYEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRD 314
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 128 MEEANCLLEVMIQR--DVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD---R 182
++ + ++E M +R + + +TLM GF GC + I G ++ R
Sbjct: 58 VDRSREVVEFMWKRHAEFESDFSVLDTLMRGFLKVEMGCEA------LEIVGRMREVGLR 111
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP-PDSHVYTTYIDGLYKNGFVLEAMK 241
A+++ ++L I + + L I+ P P + + I G + G V
Sbjct: 112 PSSSAITILFKLLLR-IGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGES 170
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + KC + N LI+ C G+ A ++ N G TP +VT+ +I+ F
Sbjct: 171 LLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDN-GCTPSLVTFGTVINAF 229
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C +G +A L M+E G PN
Sbjct: 230 CNQGNMMEARNLFDGMKEAGHIPN 253
>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
Length = 363
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 151/347 (43%), Gaps = 74/347 (21%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALN-L 71
PNMVT+NSLI G C + L +++ C P++ T+NTL + +N L
Sbjct: 8 PNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRL 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNVMTDN 121
F EM +F C PDV+T + +I G CK D M+ Q PDVVT + +
Sbjct: 68 FGEMKAKF---CNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKG-CRHD 167
G +++A LLE ++ D +P+ TY +L+DGF +KG C+ +
Sbjct: 125 YCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPN 184
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V Y LI+ +C A L EM+ G++ +A TY +L I
Sbjct: 185 VVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSL-----------------I 227
Query: 228 DGLYKNGFVLEAMKVFSAI-GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN-- 284
G G + EA K+ + N C + ++DGLC+ GR+ A ++ + Q+
Sbjct: 228 GGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGT 287
Query: 285 PGL------------------TPDVVTYNIMIHGFCKEGQHQKANGL 313
P P+ Y +I +EG+H+KAN L
Sbjct: 288 PPRHDIYVALIRGEMTLSRKGRPNAKVYEAVIQELAREGRHEKANAL 334
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 33/245 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ P++VT N + ++ L+E M P+ TYNTL+DG
Sbjct: 5 GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
+K C DV +Y+ LI G+CK + A +L +ML + D T+ TL
Sbjct: 65 NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEG 124
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
+ ++ PD + YT+ +DG K ++EA +V + +C
Sbjct: 125 YCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPN 184
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ LID C G+ +A+ + ++ N G+ P+ +TY +I GFC G ++A+ +L
Sbjct: 185 VVIYTALIDAFCSAGKPTVAYKLLEEMVGN-GVQPNAITYRSLIGGFCGTGDLEEAHKML 243
Query: 315 LDMEE 319
+E
Sbjct: 244 ERLER 248
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 113/271 (41%), Gaps = 41/271 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR L G + P+++T++ LI G C RI A LF + P+V+TF
Sbjct: 59 GRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTF 118
Query: 62 NTL-------ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM---- 108
TL LV A L EE+V C PDV T T+++DG CK M++
Sbjct: 119 PTLVEGYCNAGLVDDAERLLEEIV---ASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKR 175
Query: 109 ------RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--- 159
+P+VV + D GK A LLE M+ V PN TY +L+ GF
Sbjct: 176 MAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGD 235
Query: 160 ------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
++ C+ D+++Y ++++G C+ + A+ L + G Y
Sbjct: 236 LEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYV 295
Query: 208 TLFMAINNVP----PDSHVYTTYIDGLYKNG 234
L + P++ VY I L + G
Sbjct: 296 ALIRGEMTLSRKGRPNAKVYEAVIQELAREG 326
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 25/217 (11%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LL I+ S +P++ T+ SL+ G C R++EA R+ K++ C PNV+ + L
Sbjct: 137 LLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFC 196
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----------FMMDQGMR 109
VA L EEMV G +P+ +T ++I G C G ++ +
Sbjct: 197 SAGKPTVAYKLLEEMV---GNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCK 253
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
D+ VM D L + G+M A LLE + Q P Y L+ G S+ R +
Sbjct: 254 ADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSRKGRPNAK 313
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
Y +I ++ E A +L E+L G +A T +
Sbjct: 314 VYEAVIQELAREGRHEKANALSDELL--GNKASKTRF 348
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G ++ +YN LI+G+C V+ + L EM + G D TYNTL
Sbjct: 5 GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTL------------- 51
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
IDGL K G V E ++F + C + T +CLI G CK+ R+ +A +F ++
Sbjct: 52 ----IDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDML 107
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ L PDVVT+ ++ G+C G A LL ++ + P+
Sbjct: 108 KQAAL-PDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPD 149
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M I + P+ Y + I G V + + + C+ I T N LIDGLCK GR
Sbjct: 1 MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGR 60
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F M+ PDV+TY+ +I GFCK + A L DM + P+
Sbjct: 61 VPEVNRLFGE-MKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPD 114
>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
Length = 584
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 59/338 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVF-CCDPNVITFNTLAL---------VALN 70
P++V +NS++ GLC R LEA + + V C P V+T+ +L +A+
Sbjct: 200 PDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVR 259
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
++ M+ +P +V+ + IIDGL K G + D G +VV + D
Sbjct: 260 IWNAMLER---KIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVIYTTLID 316
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG-------------CRHD 167
L K G +++A L +M + PN TY TL+D F + C D
Sbjct: 317 GLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIRDYCPLD 376
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V Y +++G C++R ++DA +L REM G+ A D+H Y +
Sbjct: 377 VAMYTAVVSGLCRERRLDDARALFREMRLAGVSA-----------------DTHAYNVLL 419
Query: 228 DGLYKNGFVLEAMKVFSAIGNHK-CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
G +++ EA ++ +G+ CV + T N +I G C L+ +F+ + Q G
Sbjct: 420 HGAFRSERPEEAFRILEELGDDPGCVANLLTYNTVIAGCC----LESGMVLFYEMRQR-G 474
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ PD TY+ +I G+ +A L +M +GL P
Sbjct: 475 IAPDFATYSALIDRLLGSGEIGRAFDLCEEMLASGLSP 512
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 162/378 (42%), Gaps = 61/378 (16%)
Query: 2 GRASGGFVLLGRILMS-CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
G G ++L +L S PN F SLI L R+ +AAR + + P+V+T
Sbjct: 73 GDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVT 132
Query: 61 F---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM-------- 103
F N + A +F+EM+ C+PD +IDG CK+ M
Sbjct: 133 FTVMIRGFCKNRMMERAWEIFQEMIKSNR--CQPDCFLYGVLIDGYCKELRMDRALELLR 190
Query: 104 ---MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL-EVMIQRDVNPNTCTYNTLMDGF-- 157
+++ ++PDVV N + D L + + EA L E M+ + +P TY +L+ G
Sbjct: 191 EMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSLIRGACK 250
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
A + + + SY+++I+G K V DA + REM + G +
Sbjct: 251 AKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVREMETLGCELNVVI 310
Query: 206 YNTL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y TL M + P+ Y T ID +N A+ +F I
Sbjct: 311 YTTLIDGLCKSGFLDDAYALYRIMKRSGAFPNQRTYATLIDTFCRNDRTETALGLFDHIR 370
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
++ C L + ++ GLC+ RL A +F M+ G++ D YN+++HG + +
Sbjct: 371 DY-CPLDVAMYTAVVSGLCRERRLDDARALFRE-MRLAGVSADTHAYNVLLHGAFRSERP 428
Query: 308 QKANGLLLDMEETGLEPN 325
++A +L EE G +P
Sbjct: 429 EEAFRIL---EELGDDPG 443
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 123/279 (44%), Gaps = 47/279 (16%)
Query: 93 IIDGLCKDG----------FMMDQGMRP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ID CK G M+ G P + + D LSK ++ +A LE+M
Sbjct: 65 VIDRACKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDA 124
Query: 142 DVNPNTCTYNTLMDGF--------AWW-------SKGCRHDVYSYNILINGYCKDRNVED 186
++P+ T+ ++ GF AW S C+ D + Y +LI+GYCK+ ++
Sbjct: 125 GIHPDVVTFTVMIRGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDR 184
Query: 187 AVSLCREMLSEG-IRADATTYNTLF-------------------MAINNVPPDSHVYTTY 226
A+ L REM E I+ D YN++ M + P YT+
Sbjct: 185 ALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLDETMVLQGCSPTVVTYTSL 244
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I G K + A+++++A+ K TI + + +IDGL K GR+ A+ + M+ G
Sbjct: 245 IRGACKAKKMKLAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVRE-METLG 303
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VV Y +I G CK G A L M+ +G PN
Sbjct: 304 CELNVVIYTTLIDGLCKSGFLDDAYALYRIMKRSGAFPN 342
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 32/226 (14%)
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNP-NTCTYNTLMDGFAWWSK------------ 162
+V+ D K G + A +L M+ P N + +L+D + ++
Sbjct: 63 SVVIDRACKSGDLRGALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMR 122
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G DV ++ ++I G+CK+R +E A + +EM+ N PD
Sbjct: 123 DAGIHPDVVTFTVMIRGFCKNRMMERAWEIFQEMIKS----------------NRCQPDC 166
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-IETCNCLIDGLCKIGRLKIAWDIFH 279
+Y IDG K + A+++ + + + + N ++DGLC+ R AW
Sbjct: 167 FLYGVLIDGYCKELRMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLD 226
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G +P VVTY +I G CK + + A + M E ++P
Sbjct: 227 ETMVLQGCSPTVVTYTSLIRGACKAKKMKLAVRIWNAMLERKIQPT 272
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 165/397 (41%), Gaps = 97/397 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + +L S +P+ T+ SL+ C +G ++E ++F + P+++ F
Sbjct: 319 GKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCF 378
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+++ + AL F V E G+I PD V T +I G C+ G
Sbjct: 379 SSMMSLFTRSGNLDKALMYFNS-VKEAGLI--PDNVIYTILIQGYCRKGMISVAMNLRNE 435
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ QG DVVT N + L K + EA+ L M +R + P
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP----------------- 478
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------ 210
D Y+ ILI+G+CK N+++A+ L ++M + IR D TYNTL
Sbjct: 479 ----DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 211 ------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
M + P Y+ ++ L G + EA +V+ + + T+ CN +I G
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKG 594
Query: 265 LCKIGRLK------------------IAWD------------------IFHMLMQNPGLT 288
C+ G I+++ + M + GL
Sbjct: 595 YCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLV 654
Query: 289 PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV TYN ++HGFC++ Q ++A +L M E G+ P+
Sbjct: 655 PDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 161/397 (40%), Gaps = 97/397 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F L+ + F+P + T+N++I GLC G+ A +F ++ P+ T+
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 62 NTLALVA---------LNLFEEM----------------------------------VNE 78
+L + A +F +M V E
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
G+I PD V T +I G C+ G M+ QG DVVT N + L K +
Sbjct: 404 AGLI--PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML 461
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
EA+ L M +R + P D Y+ ILI+G+CK N+++A+
Sbjct: 462 GEADKLFNEMTERALFP---------------------DSYTLTILIDGHCKLGNLQNAM 500
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
L ++M + IR D TYNTL M + P Y+ ++ L
Sbjct: 501 ELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNAL 560
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
G + EA +V+ + + T+ CN +I G C+ G + F M + G PD
Sbjct: 561 CSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDG-ESFLEKMISEGFVPD 619
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEET--GLEPN 325
++YN +I+GF +E KA GL+ MEE GL P+
Sbjct: 620 CISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 49/351 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFE---EMV 76
N+ T N ++ LC +G++ + ++ P+++T+NTL A + L E E++
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293
Query: 77 NEF-GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKD 125
N G P V T +I+GLCK G M+ G+ PD T + K
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSY 171
G + E + M RDV P+ ++++M F + G D Y
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
ILI GYC+ + A++L EML +G D TYNT+ M
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ PDS+ T IDG K G + AM++F + + L + T N L+DG K+G +
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDT 533
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
A +I+ ++ L P ++Y+I+++ C +G +A + +M ++P
Sbjct: 534 AKEIWADMVSKEIL-PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 120/252 (47%), Gaps = 33/252 (13%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
G+ +V TLN+M + L KDGKME+ L + ++ V P+ TYNTL+ +
Sbjct: 229 SGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEE 288
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A KG VY+YN +ING CK E A + EML G+ D+TTY +L M
Sbjct: 289 AFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348
Query: 212 AI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
+V PD +++ + ++G + +A+ F+++ +
Sbjct: 349 EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 408
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
LI G C+ G + +A ++ + ++Q G DVVTYN ++HG CK +A+ L
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQ-GCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 314 LLDMEETGLEPN 325
+M E L P+
Sbjct: 468 FNEMTERALFPD 479
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 147/345 (42%), Gaps = 66/345 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P+ V + LI+G C +G I A L ++ C +V+T+NT+ A L
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 467
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F EM PD T T +IDG CK G M ++ +R DVVT N + D
Sbjct: 468 FNEMTER---ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWW----SKGCRHD 167
K G ++ A + M+ +++ P +Y+ L+ + F W SK +
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V N +I GYC+ N D S +M+SEG D +YNTL +Y
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL------------IY---- 628
Query: 228 DGLYKNGFVLEA--MKVFSAIGNHK-----CVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
GFV E K F + + V + T N ++ G C+ ++K A +
Sbjct: 629 ------GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRK 682
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ G+ PD TY MI+GF + +A + +M + G P+
Sbjct: 683 MIER-GVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 1/173 (0%)
Query: 153 LMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+D + +H S + +I+ + + DA S M+ + N+L
Sbjct: 98 FVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDST 157
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N + V+ I + + EA + F+ + + ++I+ CN LI L +IG ++
Sbjct: 158 FSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVE 217
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+AW ++ + ++ G+ +V T NIM++ CK+G+ +K L ++E G+ P+
Sbjct: 218 LAWGVYQEISRS-GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPD 269
>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 938
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 164/377 (43%), Gaps = 84/377 (22%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
++MS F P++VTF+S+I LC G++LE L +++ PN +T+ TL
Sbjct: 250 MVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANI 309
Query: 66 -LVALNLFEEMV----------------------------NEFGVICK----PDVVTCTN 92
AL L+ +MV F ++ + P+VVT T
Sbjct: 310 YRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTA 369
Query: 93 IIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
++DGLCK G M+++ + P+VVT + M + K G +EEA LL M ++
Sbjct: 370 LVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQN 429
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
V PN TY T++DG K G + Y + L+N + +++
Sbjct: 430 VVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 489
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L ++M+S+G+ D Y +L ID +K G A+ +
Sbjct: 490 GLVKDMVSKGVTLDQINYTSL-----------------IDVFFKGGDEEAALAWAEEMQE 532
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ + N LI G+ K G++ W + M+ G+ PD+ T+NIM++ K+G +
Sbjct: 533 RGMPWDVVSYNVLISGMLKFGKVGADWA--YKGMREKGIEPDIATFNIMMNSQRKQGDSE 590
Query: 309 KANGLLLDMEETGLEPN 325
L M+ G++P+
Sbjct: 591 GILKLWDKMKSCGIKPS 607
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 152/339 (44%), Gaps = 64/339 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALN 70
+P++ N LI C GR+ A L + V D +T+NT LA A
Sbjct: 126 SPDVFALNVLIHSFCKVGRLSFAISLLRN-RVISID--TVTYNTVISGLCEHGLADEAYQ 182
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-FMMDQGMRPDVVTLNVMTDNLSKDG--- 126
EMV + G++ PD V+ +IDG CK G F+ + + ++ LN++T +
Sbjct: 183 FLSEMV-KMGIL--PDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSYYN 239
Query: 127 --KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
+EEA RD+ +M GF DV +++ +IN CK V
Sbjct: 240 LHAIEEA--------YRDM---------VMSGF-------DPDVVTFSSIINRLCKGGKV 275
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+ L REM + + TY TL M + +P D VYT
Sbjct: 276 LEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVL 335
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL+K G + EA K F + V + T L+DGLCK G L A I +++
Sbjct: 336 MDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEK-S 394
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTY+ MI+G+ K+G ++A LL ME+ + PN
Sbjct: 395 VIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPN 433
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 165/411 (40%), Gaps = 100/411 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A + L ++ P+ V++N+LI G C G + A L +++ + N+IT
Sbjct: 175 GLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEIS----ELNLITH 230
Query: 62 NTLALVALNL--FEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGFMMDQGM---------- 108
L NL EE + + PDVVT ++II+ LCK G +++ G+
Sbjct: 231 TILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSV 290
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-- 166
P+ VT + D+L K A L M+ R + + Y LMDG + + R
Sbjct: 291 YPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGL-FKAGDLREAE 349
Query: 167 -------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+V +Y L++G CK ++ A + +ML + + + TY+++
Sbjct: 350 KTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGY 409
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCV 252
M NV P+ Y T IDGL+K G +E K IG
Sbjct: 410 VKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIG----- 464
Query: 253 LTIETCNCLIDGLC----KIGRLKIA----------------------WDIFH------- 279
+E N ++D L +IGR+K D+F
Sbjct: 465 --VEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEA 522
Query: 280 -----MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ DVV+YN++I G K G+ A+ M E G+EP+
Sbjct: 523 ALAWAEEMQERGMPWDVVSYNVLISGMLKFGK-VGADWAYKGMREKGIEPD 572
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 144/336 (42%), Gaps = 53/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++V++N LI G+ G++ A +K + +P++ TFN + +N + + G+
Sbjct: 538 DVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFN----IMMNSQRKQGDSEGI 592
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ D M G++P +++ N++ L ++GKMEEA +L M+
Sbjct: 593 LKLWDK---------------MKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLM 637
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+++PN TY +D + S G + YN LI CK + A
Sbjct: 638 EIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKA 697
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +M + G D T+N+L M + P+ Y T I G
Sbjct: 698 AMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRG 757
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G + E K S + + T N LI G KIG +K + I+ ++ + GL P
Sbjct: 758 LSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIAD-GLVP 816
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN++I F G+ +A LL +M + G+ PN
Sbjct: 817 KTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPN 852
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 154/373 (41%), Gaps = 52/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S ++ ++L PN+VT++S+I G +G + EA L +K+ PN T+
Sbjct: 378 GDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTY 437
Query: 62 NTL---------ALVALNLFEEM----VNEFGVICKPDVVTCTNI-----IDGLCKDGFM 103
T+ +A+ L +EM V E I V I + GL KD M
Sbjct: 438 GTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKD--M 495
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+ +G+ D + + D K G E A E M +R + + +YN L+ G
Sbjct: 496 VSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKV 555
Query: 159 ---WWSKGCRH-----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
W KG R D+ ++NI++N K + E + L +M S GI+ + N +
Sbjct: 556 GADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVV 615
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + + P+ Y ++D K+ K + ++
Sbjct: 616 GMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIK 675
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
L+ + N LI LCK+G K A + M+ G PD VT+N ++HG+ +KA
Sbjct: 676 LSRQVYNTLIATLCKLGMTKKAAMVMGD-MEARGFIPDTVTFNSLMHGYFVGSHVRKALS 734
Query: 313 LLLDMEETGLEPN 325
M E G+ PN
Sbjct: 735 TYSVMMEAGISPN 747
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 137/323 (42%), Gaps = 54/323 (16%)
Query: 5 SGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
S G + L + SC P++++ N ++ LC G++ EA + ++ + PN+ T+
Sbjct: 589 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRI 648
Query: 64 L--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
A+ E + +G+ V +I LCK G M
Sbjct: 649 FLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYN--TLIATLCKLGMTKKAAMVMGDMEA 706
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
+G PD VT N + + +A VM++ ++PN TYNT++ G +
Sbjct: 707 RGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKE 766
Query: 159 ---WWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
W S +G R D ++YN LI+G K N++ ++++ EM+++G+ +TYN L
Sbjct: 767 VDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLIS 826
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GR 270
NV G +L+A ++ +G T +I GLCK+
Sbjct: 827 EFANV-----------------GKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTH 869
Query: 271 LKIAWDIFHM-LMQNPGLTPDVV 292
+ W+ M L + GL ++V
Sbjct: 870 PDVEWNKKAMYLAEAKGLLKEMV 892
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++G + F P+ VTFNSL+ G + +A + + PNV T
Sbjct: 691 LGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVAT 750
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+NT+ L L +E+ + +PD T +I G K G M+
Sbjct: 751 YNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMI 810
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ P T NV+ + GKM +A LL+ M +R V+PNT TY T++ G K C
Sbjct: 811 ADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLC---KLC 867
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
H +N K + +A L +EM+ E
Sbjct: 868 THPDVEWN------KKAMYLAEAKGLLKEMVEE 894
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 149/331 (45%), Gaps = 63/331 (19%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C EG + A +F + + P+V++FNTL
Sbjct: 127 ILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTL--------- 177
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M G++PDV T +V+ + L K+ +M+EAN
Sbjct: 178 --MNGY--------IKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANG 227
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L M+ + PN T+ TL+DG +CK+ ++ A+ + R+
Sbjct: 228 LFGEMLDNGLVPNGVTFTTLIDG---------------------HCKNGRLDLAMDIYRQ 266
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
ML++G D TYNTL M+ + PD YTT IDG K G
Sbjct: 267 MLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGD 326
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A ++ + L LI GLC+ GR A D ML M GL PD T
Sbjct: 327 LETAFELRERMIKESIRLDDVVYTALIFGLCQEGR---AVDAEKMLREMLRVGLKPDDET 383
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
Y ++++ FCK+G +KA+ LL +M+ G P
Sbjct: 384 YTMIMNEFCKKGDVKKASELLREMQRNGRVP 414
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 43/279 (15%)
Query: 89 TCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC N+++ L K + +++ G + N++ K+G+M A + + +
Sbjct: 103 TCRNVLEHLMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
++A L EML G+ + T+ TL M PD Y T
Sbjct: 223 DEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTL 282
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I GL K G + +A + + T LIDG CK G L+ A+++ +++
Sbjct: 283 IYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESI 342
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVV Y +I G C+EG+ A +L +M GL+P+
Sbjct: 343 RLDDVV-YTALIFGLCQEGRAVDAEKMLREMLRVGLKPD 380
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M A+G L G +L + PN VTF +LI G C GR+ A +++++ P+V+T
Sbjct: 222 MDEANG---LFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVT 278
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL +G+ K D+ ++D + + +G++PD +T + D
Sbjct: 279 YNTLI-------------YGLCKKGDLKQARYLLDEMSR------KGLKPDKITYTTLID 319
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K+G +E A L E MI+ + + Y L+ G + G +
Sbjct: 320 GSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKP 379
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
D +Y +++N +CK +V+ A L REM G
Sbjct: 380 DDETYTMIMNEFCKKGDVKKASELLREMQRNG 411
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLS-EGIRADATTYNTLFMAINNVPPDSHVY 223
RH + SY +I+ C + +A SL + ++S +G + + + + D +V+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ F H + +TC +++ L K K+ W + +++
Sbjct: 70 SGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H FCKEG+ + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170
>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
Length = 671
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 154/346 (44%), Gaps = 58/346 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
T N+VT+ +LI G C GR+ +A RL + V P+ T+NT+ A
Sbjct: 181 TANVVTYTALIDGYCRSGRLADALRLIASMPVA---PDTYTYNTVLKGLCCAKQWEQAEE 237
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L EM+ C P+ VT I C++G M G PDV+ + + +
Sbjct: 238 LMREMIRNS---CHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTLVN 294
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS-----------KGCRH 166
S+ G+++EA LL M+ R PNT YN + G W K C
Sbjct: 295 GFSEHGRVDEALKLLNTMLCR---PNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPP 351
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP--------- 217
+ +++ LIN C++R VE AV + +M G D +YNT+ ++
Sbjct: 352 NDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLL 411
Query: 218 ------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD+ + + L K +A+++ + + C + T N LID LC+ G++
Sbjct: 412 KSMLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQV 471
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
K A ++F LM PD+VTY+ +I+GF ++G + A L M
Sbjct: 472 KDAIEVFE-LMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSM 516
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 163/383 (42%), Gaps = 83/383 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR LL +L PN V +N+ +KGLC GR E L ++ C PN TF
Sbjct: 300 GRVDEALKLLNTMLCR---PNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPNDATF 356
Query: 62 NTL--ALVALNLFE------EMVNEFG------------------------------VIC 83
+TL +L L E E + ++G ++C
Sbjct: 357 STLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKSMLC 416
Query: 84 KPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
KPD ++ ++ LCK M+ + R + +T N++ D+L ++G++++A
Sbjct: 417 KPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIE 476
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFA-----------WWSKGCRHDVYSYNILINGYCKDR 182
+ E+M + P+ TY++L++GF+ + S CR D++SYN + G C
Sbjct: 477 VFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSMPCRADIFSYNATLKGLCMAA 536
Query: 183 NVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+DA L +M++E + T+N L I L + G V A+ V
Sbjct: 537 RWDDAGELIADMVTEDCLPNEVTFNIL-----------------ISSLCQKGLVNRAIDV 579
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + + I T N LI+G + GRL D L P PD ++YN ++ G C
Sbjct: 580 YEQMPKYGITPDIFTYNALINGYSEQGRLD---DALKFLSTMP-CEPDTISYNSILKGLC 635
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
+ + + A L+ +M PN
Sbjct: 636 RAERWKDAEKLVTEMLRKNCTPN 658
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 159/344 (46%), Gaps = 53/344 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L+ ++ + PN VTF + I+ C G + A L +++ + C P+VI ++TL +
Sbjct: 238 LMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTL----V 293
Query: 70 NLFEE--MVNEF-----GVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDV 112
N F E V+E ++C+P+ V + GLC G M+ + P+
Sbjct: 294 NGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWEEVGELIAEMVRKDCPPND 353
Query: 113 VTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG--------- 163
T + + ++L ++ +E A +LE M + P+ +YNT++ F+ ++
Sbjct: 354 ATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCFSDQARADDALKLLKS 413
Query: 164 --CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
C+ D S+N ++ CK + DAV L +ML + R + T+N L
Sbjct: 414 MLCKPDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRINEMTFNIL------------ 461
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
ID L +NG V +A++VF + ++C+ I T + LI+G + G ++A+D+F +
Sbjct: 462 -----IDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQGLDEMAFDLFRSM 516
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+ +YN + G C + A L+ DM PN
Sbjct: 517 ----PCRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLPN 556
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 133/323 (41%), Gaps = 48/323 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-----VALNLFEEM 75
P +++ N LIK LC R+ +A R+ + L + ++ NTL +L E +
Sbjct: 114 PAVISCNILIKKLCARRRLADAERVLEALKASGA-ADAVSHNTLVAGYCRDGSLGDAERV 172
Query: 76 VNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-------GMRPDVVTLNVMTDNLSKDGKM 128
V +VVT T +IDG C+ G + D + PD T N + L +
Sbjct: 173 VEAARASGTANVVTYTALIDGYCRSGRLADALRLIASMPVAPDTYTYNTVLKGLCCAKQW 232
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNIL 174
E+A L+ MI+ +PN T+ T + F GC DV Y+ L
Sbjct: 233 EQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYSTL 292
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
+NG+ + V++A+ L ML P++ Y + GL G
Sbjct: 293 VNGFSEHGRVDEALKLLNTMLCR--------------------PNTVCYNAALKGLCIAG 332
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
E ++ + + C T + LI+ LC+ ++ A ++ MQ G PDVV+Y
Sbjct: 333 RWEEVGELIAEMVRKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQ-MQKYGYMPDVVSY 391
Query: 295 NIMIHGFCKEGQHQKANGLLLDM 317
N +I F + + A LL M
Sbjct: 392 NTIISCFSDQARADDALKLLKSM 414
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 39/235 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L+ ++L N +TFN LI LC G++ +A +F+ + + C P+++T+++L
Sbjct: 442 LVAKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFS 501
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----------RP 110
+A +LF M C+ D+ + + GLC D G P
Sbjct: 502 EQGLDEMAFDLFRSMP------CRADIFSYNATLKGLCMAARWDDAGELIADMVTEDCLP 555
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ VT N++ +L + G + A + E M + + P+ TYN L++G++ +
Sbjct: 556 NEVTFNILISSLCQKGLVNRAIDVYEQMPKYGITPDIFTYNALINGYSEQGRLDDALKFL 615
Query: 163 ---GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY---NTLFM 211
C D SYN ++ G C+ +DA L EML + + T+ N LF+
Sbjct: 616 STMPCEPDTISYNSILKGLCRAERWKDAEKLVTEMLRKNCTPNEVTFKYANQLFI 670
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V S NILI C R + DA + + + G ADA ++NTL +
Sbjct: 116 VISCNILIKKLCARRRLADAERVLEALKASGA-ADAVSHNTL-----------------V 157
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
G ++G + +A +V A + T LIDG C+ GRL D ++ P +
Sbjct: 158 AGYCRDGSLGDAERVVEA-ARASGTANVVTYTALIDGYCRSGRLA---DALRLIASMP-V 212
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD TYN ++ G C Q ++A L+ +M PN
Sbjct: 213 APDTYTYNTVLKGLCCAKQWEQAEELMREMIRNSCHPN 250
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 156/354 (44%), Gaps = 55/354 (15%)
Query: 23 MVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNLFE 73
MVT+N+LI C EG + EA + + P++ T+N + A +
Sbjct: 1 MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLS 123
EM+N + PD T ++ C+ G M+ QG+ PD+V+ + + S
Sbjct: 61 EMLN---IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFS 117
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
++ +++A M + + P+ Y LM G+ +GC DV
Sbjct: 118 RNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVI 177
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
+YN ++NG CK++ + DA L EM+ G D T+ TL M
Sbjct: 178 AYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 237
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N+ PD Y T IDG K G + +A +++ + + K T LI+ C +G +
Sbjct: 238 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 297
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ ++ ++++ G+ P +VT N +I G+C+ G KA+ L M G+ P+
Sbjct: 298 SEAFRLWDVMIEK-GIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD 350
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVAL 69
P+ V + L+ G C G +LEA ++ ++ C +VI +NT + A
Sbjct: 137 LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDAD 196
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
LF+EMV E G + PD T T +I G C+DG M + ++PD+V N +
Sbjct: 197 KLFDEMV-ERGAL--PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 253
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWW----SKGCR 165
D K G+ME+A+ L + MI R + PN TY L+ + F W KG +
Sbjct: 254 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 313
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + N +I GYC+ + A M+++G+ D +YNTL
Sbjct: 314 PTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 357
>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14770, mitochondrial; Flags: Precursor
Length = 940
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 164/377 (43%), Gaps = 84/377 (22%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------- 65
++MS F P++VTF+S+I LC G++LE L +++ PN +T+ TL
Sbjct: 252 MVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANI 311
Query: 66 -LVALNLFEEMV----------------------------NEFGVICK----PDVVTCTN 92
AL L+ +MV F ++ + P+VVT T
Sbjct: 312 YRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTA 371
Query: 93 IIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
++DGLCK G M+++ + P+VVT + M + K G +EEA LL M ++
Sbjct: 372 LVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQN 431
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
V PN TY T++DG K G + Y + L+N + +++
Sbjct: 432 VVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVK 491
Query: 189 SLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
L ++M+S+G+ D Y +L ID +K G A+ +
Sbjct: 492 GLVKDMVSKGVTLDQINYTSL-----------------IDVFFKGGDEEAALAWAEEMQE 534
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ + N LI G+ K G++ W + M+ G+ PD+ T+NIM++ K+G +
Sbjct: 535 RGMPWDVVSYNVLISGMLKFGKVGADWA--YKGMREKGIEPDIATFNIMMNSQRKQGDSE 592
Query: 309 KANGLLLDMEETGLEPN 325
L M+ G++P+
Sbjct: 593 GILKLWDKMKSCGIKPS 609
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 152/339 (44%), Gaps = 64/339 (18%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT---------LALVALN 70
+P++ N LI C GR+ A L + V D +T+NT LA A
Sbjct: 128 SPDVFALNVLIHSFCKVGRLSFAISLLRN-RVISID--TVTYNTVISGLCEHGLADEAYQ 184
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-FMMDQGMRPDVVTLNVMTDNLSKDG--- 126
EMV + G++ PD V+ +IDG CK G F+ + + ++ LN++T +
Sbjct: 185 FLSEMV-KMGIL--PDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSYYN 241
Query: 127 --KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNV 184
+EEA RD+ +M GF DV +++ +IN CK V
Sbjct: 242 LHAIEEA--------YRDM---------VMSGF-------DPDVVTFSSIINRLCKGGKV 277
Query: 185 EDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTY 226
+ L REM + + TY TL M + +P D VYT
Sbjct: 278 LEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVL 337
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+DGL+K G + EA K F + V + T L+DGLCK G L A I +++
Sbjct: 338 MDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEK-S 396
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ P+VVTY+ MI+G+ K+G ++A LL ME+ + PN
Sbjct: 397 VIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPN 435
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 165/411 (40%), Gaps = 100/411 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G A + L ++ P+ V++N+LI G C G + A L +++ + N+IT
Sbjct: 177 GLADEAYQFLSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEIS----ELNLITH 232
Query: 62 NTLALVALNL--FEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGFMMDQGM---------- 108
L NL EE + + PDVVT ++II+ LCK G +++ G+
Sbjct: 233 TILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSV 292
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-- 166
P+ VT + D+L K A L M+ R + + Y LMDG + + R
Sbjct: 293 YPNHVTYTTLVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGL-FKAGDLREAE 351
Query: 167 -------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+V +Y L++G CK ++ A + +ML + + + TY+++
Sbjct: 352 KTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGY 411
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNG---FVLEAMKVFSAIGNHKCV 252
M NV P+ Y T IDGL+K G +E K IG
Sbjct: 412 VKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIG----- 466
Query: 253 LTIETCNCLIDGLC----KIGRLKIA----------------------WDIFH------- 279
+E N ++D L +IGR+K D+F
Sbjct: 467 --VEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQINYTSLIDVFFKGGDEEA 524
Query: 280 -----MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MQ G+ DVV+YN++I G K G+ A+ M E G+EP+
Sbjct: 525 ALAWAEEMQERGMPWDVVSYNVLISGMLKFGK-VGADWAYKGMREKGIEPD 574
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 144/336 (42%), Gaps = 53/336 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
++V++N LI G+ G++ A +K + +P++ TFN + +N + + G+
Sbjct: 540 DVVSYNVLISGMLKFGKV-GADWAYKGMREKGIEPDIATFN----IMMNSQRKQGDSEGI 594
Query: 82 ICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
+ D M G++P +++ N++ L ++GKMEEA +L M+
Sbjct: 595 LKLWDK---------------MKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLM 639
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+++PN TY +D + S G + YN LI CK + A
Sbjct: 640 EIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKA 699
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ +M + G D T+N+L M + P+ Y T I G
Sbjct: 700 AMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRG 759
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L G + E K S + + T N LI G KIG +K + I+ ++ + GL P
Sbjct: 760 LSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIAD-GLVP 818
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TYN++I F G+ +A LL +M + G+ PN
Sbjct: 819 KTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPN 854
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 154/373 (41%), Gaps = 52/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S ++ ++L PN+VT++S+I G +G + EA L +K+ PN T+
Sbjct: 380 GDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTY 439
Query: 62 NTL---------ALVALNLFEEM----VNEFGVICKPDVVTCTNI-----IDGLCKDGFM 103
T+ +A+ L +EM V E I V I + GL KD M
Sbjct: 440 GTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKD--M 497
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----- 158
+ +G+ D + + D K G E A E M +R + + +YN L+ G
Sbjct: 498 VSKGVTLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKV 557
Query: 159 ---WWSKGCRH-----DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
W KG R D+ ++NI++N K + E + L +M S GI+ + N +
Sbjct: 558 GADWAYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVV 617
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + + P+ Y ++D K+ K + ++
Sbjct: 618 GMLCENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLLSYGIK 677
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
L+ + N LI LCK+G K A + M+ G PD VT+N ++HG+ +KA
Sbjct: 678 LSRQVYNTLIATLCKLGMTKKAAMVMGD-MEARGFIPDTVTFNSLMHGYFVGSHVRKALS 736
Query: 313 LLLDMEETGLEPN 325
M E G+ PN
Sbjct: 737 TYSVMMEAGISPN 749
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 137/323 (42%), Gaps = 54/323 (16%)
Query: 5 SGGFVLLGRILMSC-FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
S G + L + SC P++++ N ++ LC G++ EA + ++ + PN+ T+
Sbjct: 591 SEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLTTYRI 650
Query: 64 L--------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMD 105
A+ E + +G+ V +I LCK G M
Sbjct: 651 FLDTSSKHKRADAIFKTHETLLSYGIKLSRQVYN--TLIATLCKLGMTKKAAMVMGDMEA 708
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------- 158
+G PD VT N + + +A VM++ ++PN TYNT++ G +
Sbjct: 709 RGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKE 768
Query: 159 ---WWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
W S +G R D ++YN LI+G K N++ ++++ EM+++G+ +TYN L
Sbjct: 769 VDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLIS 828
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI-GR 270
NV G +L+A ++ +G T +I GLCK+
Sbjct: 829 EFANV-----------------GKMLQARELLKEMGKRGVSPNTSTYCTMISGLCKLCTH 871
Query: 271 LKIAWDIFHM-LMQNPGLTPDVV 292
+ W+ M L + GL ++V
Sbjct: 872 PDVEWNKKAMYLAEAKGLLKEMV 894
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G +++G + F P+ VTFNSL+ G + +A + + PNV T
Sbjct: 693 LGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVAT 752
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDG----------FMM 104
+NT+ L L +E+ + +PD T +I G K G M+
Sbjct: 753 YNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMI 812
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
G+ P T NV+ + GKM +A LL+ M +R V+PNT TY T++ G K C
Sbjct: 813 ADGLVPKTSTYNVLISEFANVGKMLQARELLKEMGKRGVSPNTSTYCTMISGLC---KLC 869
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
H +N K + +A L +EM+ E
Sbjct: 870 THPDVEWN------KKAMYLAEAKGLLKEMVEE 896
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 112/415 (26%), Positives = 166/415 (40%), Gaps = 93/415 (22%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVI 59
MG A GR+ P++ T+N +++ + E A + C C PN+
Sbjct: 140 MGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLY 199
Query: 60 TFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF-------- 102
TF L A +F++M G P+ VT T +I GLC+ G
Sbjct: 200 TFGILMDGLYKKGRTSDAQKMFDDMT---GRGISPNRVTYTILISGLCQRGSADDARKLF 256
Query: 103 --MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG---- 156
M G PD V N + D K G+M EA LL + + Y++L+DG
Sbjct: 257 YEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRA 316
Query: 157 ------FAWWS----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
F ++ K + D+ Y ILI G K +EDA+ L M S+GI D Y
Sbjct: 317 RRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCY 376
Query: 207 NTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N + A+ PD+ +T I + +NG V EA ++F+ I
Sbjct: 377 NAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEK 436
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--------------------------- 281
C ++ T N LIDGLCK G LK A + H +
Sbjct: 437 SGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESG 496
Query: 282 -----------MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G +PD+V+YN++I+GFC+ G A LL ++ GL P+
Sbjct: 497 SILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPD 551
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 151/394 (38%), Gaps = 89/394 (22%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R + F L +L P+++ + LI+GL G+I +A +L + P+ +N
Sbjct: 318 RYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYN 377
Query: 63 TL--ALVALNLFEE----MVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------Q 106
+ AL L EE + PD T T +I +C++G + +
Sbjct: 378 AVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKS 437
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM--------IQRDVNPNTCTYNTLMDGFA 158
G P V T N + D L K G+++EA LL M R + +++T+++ +
Sbjct: 438 GCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGS 497
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ G D+ SYN+LING+C+ +++ A+ L + +G+ D+ TYNT
Sbjct: 498 ILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNT 557
Query: 209 LFMAINNVPPDSHVYTTY------------------------------------------ 226
L ++ V + + +
Sbjct: 558 LINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISC 617
Query: 227 --------IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
I+ +K G A++ + K LT+ + GLC+ GR A +F
Sbjct: 618 LDDETANEIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVF 677
Query: 279 HMLMQNPGLT--PDVVTYNIMIHGFCKEGQHQKA 310
+L + L P V +IHG CK Q A
Sbjct: 678 SVLREKKILVTPPSCVK---LIHGLCKREQLDAA 708
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 133/306 (43%), Gaps = 47/306 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ TFN+LI GLC G + EA L K+ V P + F L+ F+ MV E
Sbjct: 440 SPSVATFNALIDGLCKSGELKEARLLLHKMEV--GRPASL-FLRLSHSGNRSFDTMV-ES 495
Query: 80 GVICKPDVVTCTNIIDGLCKD-GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
G I K +D D G PD+V+ NV+ + + G ++ A LL V+
Sbjct: 496 GSILKA------------YRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVL 543
Query: 139 IQRDVNPNTCTYNTLMDGFA------------WWSKGCRHDVYSYNILINGYCKDRNVED 186
+ ++P++ TYNTL++G + RH Y L+ C+ R V
Sbjct: 544 QLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLV 603
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV-----------------YTTYIDG 229
A +L + L + D T N + + + YT ++ G
Sbjct: 604 AFNLWMKYLKKISCLDDETANEIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIG 663
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF-HMLMQNPGLT 288
L ++G EA+ VFS + K ++T +C LI GLCK +L A ++F + L N L
Sbjct: 664 LCQSGRFHEALMVFSVLREKKILVTPPSCVKLIHGLCKREQLDAAIEVFLYTLDNNFKLM 723
Query: 289 PDVVTY 294
P V Y
Sbjct: 724 PRVCNY 729
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------- 209
S G D Y + +LI+ Y K E AV M R D TYN +
Sbjct: 120 SGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFF 179
Query: 210 ---FMAIN-----NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
F N N P+ + + +DGLYK G +A K+F + T L
Sbjct: 180 MLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTIL 239
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I GLC+ G A +F+ MQ G PD V +N ++ GFCK G+ +A LL E+ G
Sbjct: 240 ISGLCQRGSADDARKLFYE-MQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDG 298
Query: 322 L 322
Sbjct: 299 F 299
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 63/169 (37%), Gaps = 37/169 (21%)
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
+MLSE D + V DS+ + I K G +A++ F + C
Sbjct: 100 DMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCR 159
Query: 253 LTIET---------------------------CNC---------LIDGLCKIGRLKIAWD 276
+ T CNC L+DGL K GR A
Sbjct: 160 PDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQK 219
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+F M G++P+ VTY I+I G C+ G A L +M+ +G P+
Sbjct: 220 MFDD-MTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPD 267
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 50/270 (18%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G LL + + +P+ VT+N+LI GL GR EA +LF + F P V +
Sbjct: 531 GDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAV--Y 588
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMD 105
+L LVA NL+ + + + + C D N I+ K+G +++
Sbjct: 589 RSLMTWSCRKRKVLVAFNLWMKYLKK--ISCLDD--ETANEIEQCFKEGETERALRRLIE 644
Query: 106 QGMRPDVVTLNVMT---DNLSKDGKMEEANCLLEVMIQRD--VNPNTCTYNTLMDGFAWW 160
R D +TL T L + G+ EA + V+ ++ V P +C
Sbjct: 645 LDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKKILVTPPSCVK---------- 694
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
LI+G CK ++ A+ + L + N L ++
Sbjct: 695 -------------LIHGLCKREQLDAAIEVFLYTLDNNFKLMPRVCNYLLSSLLESTEKM 741
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
+ + + + + G+ +++M F + H+
Sbjct: 742 EIVSQLTNRMERAGYNVDSMLRFEILKYHR 771
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 154/380 (40%), Gaps = 101/380 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MGR G +LLG + F P +VT+ SLI L +G + + LF ++ PNV
Sbjct: 1198 MGR---GLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQI 1254
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+N++ A A+ + ++M F C PD++T +I GLC +G
Sbjct: 1255 YNSVIDALCKCRSATQAMVILKQM---FASGCDPDIITFNTLITGLCHEGHVRKAEHFLR 1311
Query: 103 ------------------------------------MMDQGMRPDVVTLNVMTDNLSKDG 126
MM +G PDVVT + L G
Sbjct: 1312 EAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAG 1371
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVED 186
K+ EA + E M +R V P DV YN+LI+G CK R +
Sbjct: 1372 KVSEALIVREKMTERQVFP---------------------DVNIYNVLISGLCKKRMLPA 1410
Query: 187 AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
A ++ EML + NV PD VY T IDG ++ + +A K+F +
Sbjct: 1411 AKNILEEMLEK-----------------NVQPDEFVYATLIDGFIRSENLGDARKIFEFM 1453
Query: 247 GNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML-MQNPGLTPDVVTYNIMIHGFCKEG 305
+ I +CN +I G C+ G + A I M M+ G PD TY +I G+ K+G
Sbjct: 1454 EHKGICPDIVSCNAMIKGYCQFGMMSEA--ILCMSNMRKVGCIPDEFTYTTVISGYAKQG 1511
Query: 306 QHQKANGLLLDMEETGLEPN 325
A L DM + +PN
Sbjct: 1512 NLNGALRWLCDMIKRKCKPN 1531
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 145/360 (40%), Gaps = 94/360 (26%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+PN+ +NS+I LC +A + K++ CDP++ITFNTL A
Sbjct: 1248 FSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAE 1307
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+ E + P+ ++ T +I G C G MM +G PDVVT +
Sbjct: 1308 HFLREAIRR---ELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALI 1364
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
L GK+ EA + E M +R V P DV YN+LI+G C
Sbjct: 1365 HGLVVAGKVSEALIVREKMTERQVFP---------------------DVNIYNVLISGLC 1403
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
K R + A ++ EML + NV PD VY T IDG ++ + +A
Sbjct: 1404 KKRMLPAAKNILEEMLEK-----------------NVQPDEFVYATLIDGFIRSENLGDA 1446
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW-------------DIFHMLMQNPG 286
K+F + + I +CN +I G C+ G + A D F G
Sbjct: 1447 RKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 1506
Query: 287 LT---------------------PDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
P+VVTY+ +I+G+CK G A GL +M+ L PN
Sbjct: 1507 YAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPN 1566
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 151/340 (44%), Gaps = 54/340 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNT 63
A+ V+L ++ S P+++TFN+LI GLC EG + +A ++ +PN +++
Sbjct: 1268 ATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTP 1327
Query: 64 LA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
L +VA +L EM+ G PDVVT +I GL G M
Sbjct: 1328 LIHGFCMRGELMVASDLLVEMM---GRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMT 1384
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--- 161
++ + PDV NV+ L K + A +LE M++++V P+ Y TL+DGF
Sbjct: 1385 ERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLG 1444
Query: 162 -----------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
KG D+ S N +I GYC+ + +A+ M G
Sbjct: 1445 DARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG------------ 1492
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
PD YTT I G K G + A++ + KC + T + LI+G CK G
Sbjct: 1493 -----CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGD 1547
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
A +F MQ L+P+VVTY I+I K+ + +A
Sbjct: 1548 TDFAEGLFAN-MQAEALSPNVVTYTILIGSLFKKDKVLRA 1586
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 78/367 (21%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL--- 66
LL ++ TP++VTF +LI GL G++ EA + +K+ P+V +N L
Sbjct: 1344 LLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLC 1403
Query: 67 ------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A N+ EEM+ + +PD +IDG + FM +G+ P
Sbjct: 1404 KKRMLPAAKNILEEMLEKN---VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICP 1460
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WW 160
D+V+ N M + G M EA + M + P+ TY T++ G+A W
Sbjct: 1461 DIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWL 1520
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ C+ +V +Y+ LINGYCK + + A L M +E + + TY L
Sbjct: 1521 CDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKK 1580
Query: 211 ------------MAINNVPPDSHVYTTYIDGLY-------------------KNGFVLEA 239
M +N+ P+ ++GL K+ ++
Sbjct: 1581 DKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVF 1640
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
K+ IG+ + N +I LC+ L+ A D F M G P+ +T+ +++
Sbjct: 1641 KKLVFDIGDPRN----SAYNAIIFSLCRHNMLREALD-FKNRMAKKGYVPNPITFLSLLY 1695
Query: 300 GFCKEGQ 306
GFC G+
Sbjct: 1696 GFCSVGK 1702
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G P+V N + L + + ++A L + M+ +D + + L+ G
Sbjct: 1107 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEG 1166
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-- 210
A W GC V YN+LI+GYC+ ++ + L EM ++G TY +L
Sbjct: 1167 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINW 1226
Query: 211 ----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M P+ +Y + ID L K +AM + + C
Sbjct: 1227 LGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPD 1286
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I T N LI GLC G ++ A ++ L P+ ++Y +IHGFC G+ A+ LL
Sbjct: 1287 IITFNTLITGLCHEGHVRKAEHFLREAIRRE-LNPNQLSYTPLIHGFCMRGELMVASDLL 1345
Query: 315 LDMEETGLEPN 325
++M G P+
Sbjct: 1346 VEMMGRGHTPD 1356
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 173/378 (45%), Gaps = 62/378 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF----CCDPN 57
G + + ++ S +P++ T+N+++ GL G++ + F+ NV CC N
Sbjct: 304 GNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKL---NKCFELWNVMSKNNCC--N 358
Query: 58 VITFNTLALVALN--------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM------ 103
++++N L L+ + ++++E G+ K D T +I+GLCK+G++
Sbjct: 359 IVSYNMLIQGLLDNKKVEQAICYWQLLHERGL--KADSTTYGLLINGLCKNGYLNKALRI 416
Query: 104 ----MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA- 158
++G D + M L K G +E+A L+ M + N+ +N+L++G+
Sbjct: 417 LEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVR 476
Query: 159 -------------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
SK C V SYN +ING CK DA +EML EG++ D T
Sbjct: 477 AFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMIT 536
Query: 206 YNTLF----------MAIN--------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIG 247
Y+ L MA+N + PD ++ I GL V A+++F+ +
Sbjct: 537 YSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMR 596
Query: 248 NHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH 307
CV + T N +++GL K G A I+ +++ GL PD+++YNI G C +
Sbjct: 597 QVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILE-AGLQPDIISYNITFKGLCSCARV 655
Query: 308 QKANGLLLDMEETGLEPN 325
A L D + G+ PN
Sbjct: 656 SDAIEFLYDALDRGILPN 673
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 170/392 (43%), Gaps = 90/392 (22%)
Query: 20 TPNMVTFNSLIK-----------------------------------GLCTEGRILEAAR 44
+PN+ T+N LIK L G +L+A
Sbjct: 146 SPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVE 205
Query: 45 LFKKLNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIID 95
LF +++V +P+V+ +N L + A +++ ++ E V P V T +I+
Sbjct: 206 LFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVY--PSVETYNIMIN 263
Query: 96 GLCKDGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
GLCK G +D+ M PD+ T + M LSK G A + + MI+ ++
Sbjct: 264 GLCKLG-KLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLS 322
Query: 145 PNTCTYNTLMDG----------FAWWSKGCRH---DVYSYNILINGYCKDRNVEDAVSLC 191
P+ TYN ++ G F W+ ++ ++ SYN+LI G ++ VE A+
Sbjct: 323 PDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYW 382
Query: 192 REMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKN 233
+ + G++AD+TTY L + D+ Y++ + GL K
Sbjct: 383 QLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKK 442
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + +A+++ + ++ L N LI+G + +L+ A + M++ P VV+
Sbjct: 443 GMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLRE-MKSKDCAPTVVS 501
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I+G CK + A L +M E GL+P+
Sbjct: 502 YNTIINGLCKAERFSDAYLSLKEMLEEGLKPD 533
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 154/319 (48%), Gaps = 53/319 (16%)
Query: 17 SCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------V 67
S P++ T+N +I GLC G++ E+ ++ ++ P++ TF+++
Sbjct: 249 SSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNA 308
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQGMRPDVVTLNVM 118
A +F+EM+ E G+ PDV T ++ GL + G + M + ++V+ N++
Sbjct: 309 AEKVFQEMI-ESGL--SPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNML 365
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKGCR---------- 165
L + K+E+A C +++ +R + ++ TY L++G + +K R
Sbjct: 366 IQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGA 425
Query: 166 -HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D ++Y+ +++G CK +E AV L +M N +SHV+
Sbjct: 426 DLDTFAYSSMVHGLCKKGMLEQAVELIHQMKK-----------------NRRKLNSHVFN 468
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ I+G + + EA+ V + + C T+ + N +I+GLCK R A+ +++
Sbjct: 469 SLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEE 528
Query: 285 PGLTPDVVTYNIMIHGFCK 303
GL PD++TY+++I G C+
Sbjct: 529 -GLKPDMITYSLLIDGLCR 546
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 145/342 (42%), Gaps = 73/342 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGL-------CTEGRILEAARLFKKLNVFCC 54
G A FV IL P +V I L C+E L A + + K C
Sbjct: 38 GYAHPPFVF-HHILRRLMDPKLVVHVGRIVDLMRAQRCTCSEDVALSAIKAYAK----CS 92
Query: 55 DPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMM 104
P+ ALNLF+ MV+ FG C P + + ++++ + +
Sbjct: 93 MPDQ---------ALNLFQNMVDIFG--CNPGIRSFNSMLNAFIESNQWREAELFFTYFQ 141
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC 164
GM P++ T N++ K + E+ LL M + +NP
Sbjct: 142 TAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNP------------------- 182
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D+ SY LIN K N+ DAV L EM G+ D YN L
Sbjct: 183 --DILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNIL--------------- 225
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVL-TIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG + G ++A +++ + V ++ET N +I+GLCK+G+L + ++++ + +
Sbjct: 226 --IDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKK 283
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
N +PD+ T++ MIHG K G A + +M E+GL P+
Sbjct: 284 NEK-SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPD 324
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 58/334 (17%)
Query: 41 EAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNI 93
+A LF+ + ++F C+P + +FN++ A + N + E F P++ T +
Sbjct: 96 QALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNIL 155
Query: 94 IDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I CK +M + G+ PD+++ + + L+K G + +A L + M R V
Sbjct: 156 IKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGV 215
Query: 144 NPNTCTYNTLMDGF-----------AWWSKGCRHDVY----SYNILINGYCKDRNVEDAV 188
NP+ YN L+DGF W VY +YNI+ING CK +++++
Sbjct: 216 NPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESM 275
Query: 189 SLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGL 230
+ M D T++++ ++ + PD Y + GL
Sbjct: 276 EMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGL 335
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA---WDIFHMLMQNPGL 287
++ G + + ++++ + + C I + N LI GL +++ A W + H GL
Sbjct: 336 FRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQAICYWQLLH----ERGL 390
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
D TY ++I+G CK G KA +L + E G
Sbjct: 391 KADSTTYGLLINGLCKNGYLNKALRILEEAENEG 424
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 42/233 (18%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLF------- 72
N FNSLI G ++ EA + +++ C P V+++NT+ L F
Sbjct: 463 NSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSL 522
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNL 122
+EM+ E G+ KPD++T + +IDGLC+ + +++ ++PD+ N++ L
Sbjct: 523 KEMLEE-GL--KPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGL 579
Query: 123 SKDGKMEEANCLLEVMIQ-RDVN--PNTCTYNTLMDGF----------AWWSK----GCR 165
K++ A LE+ Q R VN P+ T+NT+M+G W + G +
Sbjct: 580 CTAQKVDVA---LEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQ 636
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
D+ SYNI G C V DA+ + L GI +A T+N L A+ + P
Sbjct: 637 PDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDDKP 689
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 127/284 (44%), Gaps = 45/284 (15%)
Query: 86 DVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
DV++ + I+GLCK G M ++G PD T N++ + L KD ++E L+
Sbjct: 90 DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149
Query: 136 EVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKD 181
+ M R +P TY TL+ GF +G + +Y LI G C
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209
Query: 182 RNVEDAVSLCREMLSEGIR--ADATTYNTLF------------------MAINNVPPDSH 221
VE A+ + +EM G + TY L M I+ P++
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNA 269
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YT I GL + G LEA + + + C L + N LIDGLCK+G L A ++ +L
Sbjct: 270 TYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREM-QIL 328
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ PDV TY +I G C G +A GL+ +M G+ PN
Sbjct: 329 MVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPN 372
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 108/252 (42%), Gaps = 40/252 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
G L+ + F+P +VT+ +LI G CT GR+ A + ++ PN +T+ L
Sbjct: 145 GVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQ 204
Query: 65 ----------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MM 104
A++ L + NE C P+VVT T +I GLC+ G M+
Sbjct: 205 GLCDCGEVERAILVLKEMKLRGNE----CCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMI 260
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
G P+ T + L + G EA LL M+ + YN+L+DG
Sbjct: 261 ISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELD 320
Query: 157 FA------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
FA KG DV++Y LI G C +++A+ L +EM ++GI ++ TY TL
Sbjct: 321 FAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLI 380
Query: 211 MAINNVPPDSHV 222
H
Sbjct: 381 NGFTQADRTDHA 392
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 34/245 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVF---CCDPNV 58
GR +L + TPN VT+ +LI+GLC G + A + K++ + CC PNV
Sbjct: 175 GRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECC-PNV 233
Query: 59 ITFNTL--ALVALNLFE---EMVNEFGVI-CKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+T+ L L LFE E ++E + C P+ T T +I GLC+ G ++
Sbjct: 234 VTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNE 293
Query: 107 ----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
G DVV N + D L K G+++ A + +M+++ V P+ TY +L+ G
Sbjct: 294 MVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGL 353
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + +Y LING+ + + A+ L EM S G+ Y
Sbjct: 354 LDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKI 413
Query: 209 LFMAI 213
LF ++
Sbjct: 414 LFKSL 418
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N+ D Y+ I+GL K G + EAM++F + T N LI+GLCK +L+
Sbjct: 84 LNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLE 143
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + MQ G +P VVTY +IHGFC G+ A +L +ME G+ PN
Sbjct: 144 MGVSLMDE-MQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPN 195
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 162/348 (46%), Gaps = 46/348 (13%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEF 79
N+ T+N L+K LC R+ A +L +++ C P+ +++ T+ ++ L EE E
Sbjct: 177 NVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEE-AREL 235
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKME 129
+ K V +I+G C++ M + +G+ PDV+T + + + LS+ G +E
Sbjct: 236 SMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVE 295
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHDVYSYNILI 175
A +L M R +PN T+ +LM G+ W++ G + +YN LI
Sbjct: 296 MALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLI 355
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G C + +AVS+ ++M G+ + TTY+TL M N
Sbjct: 356 HGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCL 415
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
P+ VYT +D L +N A+ + + N C T N I GLC G+ + A +
Sbjct: 416 PNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKV 475
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + Q G P+V TYN ++ G + ++A ++ ++EE ++ N
Sbjct: 476 LNQMRQY-GCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSN 522
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 155/358 (43%), Gaps = 60/358 (16%)
Query: 16 MSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEM 75
+ F P +N+LI G C E ++ E LF ++ V DP+VIT++T+ +N EM
Sbjct: 239 IKSFVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTV----INTLSEM 291
Query: 76 VN---EFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTL 115
N V+ C P+V T T+++ G G M+ +G P+ V
Sbjct: 292 GNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAY 351
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK--- 162
N + L GKM EA + + M + V PN TY+TL+DGFA W+K
Sbjct: 352 NTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMIT 411
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
GC +V Y +++ C++ A+ L M + + T+NT
Sbjct: 412 NGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEW 471
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M P+ Y +DGL+ EA+++ I + + T N ++
Sbjct: 472 AMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILS 531
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G C G K A I L+ G PD +TYN +I+ +CK+G+ + A L+ + + G
Sbjct: 532 GFCHAGMFKGALQIAGKLLVG-GTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKG 588
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 49/335 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPN--VITFNT-----LALVAL 69
F +T+ ++IK L E I L + KL C+ + VI N LA AL
Sbjct: 69 FKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQAL 128
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGL-CKDGFMMDQG----MRPDVVTLNVMTDN--- 121
F + EFG CKP V +++D L ++ F M G M+ D + LNV T N
Sbjct: 129 KTFYR-IGEFG--CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLL 185
Query: 122 --LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK---------GCRHDVYS 170
L K+ +++ A LL M + P+ +Y T++ K + V
Sbjct: 186 KALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPV 245
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN LING+C++ +E+ L EM EGI D TY+T+ I+ L
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTV-----------------INTL 288
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G V A+ V + + C + T L+ G GRL A D+++ ++Q G P+
Sbjct: 289 SEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQE-GSEPN 347
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V YN +IHG C G+ +A + ME G+ PN
Sbjct: 348 TVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPN 382
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 153/358 (42%), Gaps = 55/358 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG +L ++ + +PN+ TF SL+KG GR+ EA L+ ++ +PN +
Sbjct: 291 MGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVA 350
Query: 61 FNTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FM 103
+NTL + L + +MV V K P+ T + +IDG K G M
Sbjct: 351 YNTL-IHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKM 409
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ G P+VV M D L ++ A L+E M + PNT T+NT + G
Sbjct: 410 ITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKT 469
Query: 158 AWWSK--------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
W K GC +V +YN +++G + +A+ + E+ I+++ TYNT+
Sbjct: 470 EWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTI 529
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH-K 250
+ + PDS Y T I K G V A+++ + +
Sbjct: 530 LSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGE 589
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHM-LMQNPGLTPDVVTYNIMIHG-FCKEGQ 306
+ T L+ G+C + + + H+ M N G+ P+ T+N ++ G F K G
Sbjct: 590 GYPDVFTYTSLLWGVCN--WIGVDEAVVHLDKMINEGICPNRATWNALVRGLFSKLGH 645
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 150/326 (46%), Gaps = 65/326 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ TFN L+ LC G+ A L +K+ P +T+NTL LN +
Sbjct: 173 PDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTL----LNWY-------- 220
Query: 81 VICKP-DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
CK + +ID C M +G+ DV T NV DNL +D + + LL+ M
Sbjct: 221 --CKKGRYKAASQLID--C----MASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMR 272
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVE 185
+ V PN TYNTL+ GF K + +YN LI G+C N+
Sbjct: 273 RNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIG 332
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG------FVLEA 239
+A+ L M+S G+R + TY L ++GLYKN +LE
Sbjct: 333 EALRLMDVMVSHGLRPNEVTYGAL-----------------LNGLYKNAEFGMVSSILER 375
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
M++ +H + +IDGLCK G L+ A + +++ + PDVVT++++I+
Sbjct: 376 MRMGGVRVSHI------SYTAMIDGLCKNGMLEEAVQLLDDMLK-VSVNPDVVTFSVLIN 428
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
GF + G+ A ++ M +TGL PN
Sbjct: 429 GFFRVGKINNAKEIMCKMYKTGLVPN 454
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 61/343 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R++ G++LL R+ + PN +T+N+LI G EG+I A ++F ++++F PN IT+
Sbjct: 259 SRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITY 318
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
NTL AL L + MV+ G+ +P+ VT +++GL K+
Sbjct: 319 NTLIAGHCTTGNIGEALRLMDVMVSH-GL--RPNEVTYGALLNGLYKNAEFGMVSSILER 375
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M G+R ++ M D L K+G +EEA LL+ M++ VNP
Sbjct: 376 MRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNP----------------- 418
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
DV ++++LING+ + + +A + +M G+ P+ +
Sbjct: 419 ----DVVTFSVLINGFFRVGKINNAKEIMCKMYKTGL-----------------VPNGIL 457
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y+T I K G++ EA+ ++ + + V TCN L+ C+ G+L+ A + F M
Sbjct: 458 YSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEA-EYFMNHM 516
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GL P+ VT++ +I+G+ G KA + M G P+
Sbjct: 517 SRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPS 559
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 159/399 (39%), Gaps = 107/399 (26%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVI---TFNTLALV---------A 68
P++ T+ L+KGLC G I EA + F +L C PN + FNT A
Sbjct: 558 PSLFTYGGLLKGLCIGGHINEALKFFHRLR---CIPNAVDNVIFNTKLTSTCRSGNLSDA 614
Query: 69 LNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKDGF------------------------- 102
+ L EMV N+F PD T TN+I GLCK G
Sbjct: 615 IALINEMVTNDF----LPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYT 670
Query: 103 ---------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
M+++ + PD V NV+ D S+ GK + N +L M +
Sbjct: 671 SLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSK 730
Query: 142 DVNPNTCTYNTLMDGFA----------WWSKGCRH----DVYSYNILINGYCKDRNVEDA 187
++ N TYN L+ G+A + RH D +S++ LI GYC+ ++ + A
Sbjct: 731 NLCFNLATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVA 790
Query: 188 VSLCREMLSEGIRADATTYNTL----------------------FMAINNVPPDSHVYTT 225
+ + R + EG D T+N L FM I P+ Y
Sbjct: 791 IKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVI----PNVDTYNA 846
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
+GL + +A +V + V T + LI+G+C++G +K A + M+
Sbjct: 847 LFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKL-QDEMKTL 905
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G++ V + ++ G + + A +L M E + P
Sbjct: 906 GISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIP 944
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 47/256 (18%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVI 82
TFN LI C + +A L K++N F PNV T+N L L+ + F + V+
Sbjct: 808 TFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVL 867
Query: 83 CKPDVVTCTN----IIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKM 128
+ V +I+G+C+ G M G+ V ++ + L+ K+
Sbjct: 868 LESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKI 927
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWSKG-----------CRHDVYSYNIL 174
E A +L++M++ + P T+ TLM + A +K + DV +YN+L
Sbjct: 928 ENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVL 987
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I+G C + ++E A L EM ++ P++ +Y ID
Sbjct: 988 ISGLCANGDIEAAFKLYEEMKQR-----------------DLWPNTSIYIVLIDSFCAGN 1030
Query: 235 FVLEAMKVFSAIGNHK 250
+ +E+ K+ I + +
Sbjct: 1031 YQIESEKLLRDIQDRE 1046
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 207 NTLFMAINNVPP----DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
N++F A+ P + V+ I +N V +A++ F +G ++ TCN ++
Sbjct: 88 NSVFGALMETYPICNSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVL 147
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
L K ++ + W F ++ G+ PDV T+NI+++ C+ G+ + A LL MEE+G+
Sbjct: 148 GSLVKEQKVDMFWSFFKGMLAK-GICPDVATFNILLNALCERGKFKNAGFLLRKMEESGV 206
Query: 323 EP 324
P
Sbjct: 207 YP 208
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 20/165 (12%)
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
+G VY+ N+++ K++ V+ S + ML++GI D T+N L A+
Sbjct: 134 RGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCE------ 187
Query: 222 VYTTYIDGLYKN-GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
G +KN GF+L M+ T T N L++ CK GR K A +
Sbjct: 188 ------RGKFKNAGFLLRKME------ESGVYPTAVTYNTLLNWYCKKGRYKAASQLID- 234
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M + G+ DV TYN+ I C++ + K LL M + PN
Sbjct: 235 CMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPN 279
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
+L +L S P + +LI G+C G I A +L ++ + + + +
Sbjct: 863 VLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLA 922
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQG 107
A+ L+L EM +I P V T T ++ CK+ M
Sbjct: 923 NSKKIENAIWVLDLMLEM----QII--PTVATFTTLMHVYCKEANVAKALELRSIMEHCH 976
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF 157
++ DVV NV+ L +G +E A L E M QRD+ PNT Y L+D F
Sbjct: 977 VKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSF 1026
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 27/194 (13%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A L+ ++Q + N+ + LM+ + C + +++LI ++R V DAV
Sbjct: 73 AKTTLKHLLQLPIGLNS-VFGALMETYPI----CNSNPAVFDLLIRVCLRNRMVGDAVQT 127
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHV--YTTYIDGLYKNGFVLEAMKVFSAIGN 248
M G+ T N M + ++ + V + ++ G+ G +
Sbjct: 128 FYLMGFRGLNPSVYTCN---MVLGSLVKEQKVDMFWSFFKGMLAKGICPD---------- 174
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
+ T N L++ LC+ G+ K A + M+ G+ P VTYN +++ +CK+G+++
Sbjct: 175 ------VATFNILLNALCERGKFKNAGFLLRK-MEESGVYPTAVTYNTLLNWYCKKGRYK 227
Query: 309 KANGLLLDMEETGL 322
A+ L+ M G+
Sbjct: 228 AASQLIDCMASKGI 241
>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61400-like [Glycine max]
Length = 498
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 45/331 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
F+P ++T+ L+ C +G A ++F ++ +PNV+ + + A +F M E
Sbjct: 35 FSPTVITYGILMNCCCAQGDFSNAQKVFDEMLERGIEPNVVIYGQMG-EAEGVFGRM-RE 92
Query: 79 FGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
GV+ P++ T ++DG G M+ G+ PDVVT + D L K G +
Sbjct: 93 SGVV-TPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDL 151
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AWWSK------GCRHDVYSYNIL 174
+ A M + DV PN YN+L+ G+ A W + G DV +YNIL
Sbjct: 152 KAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNIL 211
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I G C +E+A+ L +M + A++ +N + IDG K G
Sbjct: 212 IKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVV-----------------IDGCCKIG 254
Query: 235 FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTY 294
+ +A++V S + + T + LIDG C G ++ A ++ ++ G+ PDVVTY
Sbjct: 255 DMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIK-GIVPDVVTY 313
Query: 295 NIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+I G CK G ++A L +M + GL PN
Sbjct: 314 TALIDGHCKVGNTKEAFRLHKEMLDAGLSPN 344
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 115/274 (41%), Gaps = 34/274 (12%)
Query: 85 PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
P + C ++ GL K MM + P V+T ++ + G A +
Sbjct: 2 PTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGDFSNAQKV 61
Query: 135 LEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDV-----YSYNILINGYCKDRNVEDAVS 189
+ M++R + PN Y + + + + V Y+Y L++GY +V+
Sbjct: 62 FDEMLERGIEPNVVIYGQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFY 121
Query: 190 LCREMLSEGIRADATTYNTL------------------FMAINNVPPDSHVYTTYIDGLY 231
L +ML G+ D T+ TL +MA +V P+ H Y + I G
Sbjct: 122 LYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYC 181
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G +LEAM + + + T N LI GLC I RL+ A + M + +
Sbjct: 182 KAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEK-MDEVEVFANS 240
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
V +N++I G CK G +KA + M E +EPN
Sbjct: 241 VXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPN 274
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/367 (27%), Positives = 148/367 (40%), Gaps = 62/367 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG F L +L P++VTF +LI L G + A F + F PN
Sbjct: 113 MGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHA 172
Query: 61 FNTLA---LVALNLFEEM-----VNEFGVICKPDVVTCTNIIDGLC-------KDGFM-- 103
+N+L A +L E M + G+ DVVT +I GLC G M
Sbjct: 173 YNSLIHGYCKAGDLLEAMWLRLEMERCGIF--SDVVTYNILIKGLCDICRLEEAMGLMEK 230
Query: 104 MDQ-GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MD+ + + V NV+ D K G ME+A + M + + PN T++ L+DGF
Sbjct: 231 MDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGN 290
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG DV +Y LI+G+CK N ++A L +EML G+
Sbjct: 291 VRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGL--------- 341
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF----------SAIGNHKCVLTIETC 258
P+ + IDGL K+G +A+K+F + + C
Sbjct: 342 --------SPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSRFCSPNSMMY 393
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
LI GLC+ G + A F + N G PD++ Y M+ + L DM
Sbjct: 394 AILIQGLCEDGXIFKATKFFAEMKWN-GFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMV 452
Query: 319 ETGLEPN 325
+ G+ N
Sbjct: 453 KMGVIQN 459
>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 511
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 149/341 (43%), Gaps = 65/341 (19%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--AL 66
VL ++ + P T N LI+GLC G I EA +L K L F C P+VIT+NTL L
Sbjct: 163 VLFRELIRLRYKPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGL 222
Query: 67 VALNLFEEMVNEFGVIC-----KPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
+N + + +C PDVV+ T II G CK +R
Sbjct: 223 CLINEVDRARSLLREVCLNGEFAPDVVSYTMIISGYCK--------LR------------ 262
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----------AWWSK----GCRHD 167
KMEE + L + MI PNT T+N L+DGF A +SK GC D
Sbjct: 263 -----KMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPD 317
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-------------- 213
V ++ LING+ + R V A+ + +M + I A TY+ L +
Sbjct: 318 VATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILR 377
Query: 214 ----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
+++ P +Y IDG K+G V EA K+ + + ++C T LI G C G
Sbjct: 378 LLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKG 437
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
R+ A F ++ G PD +T N + K G +A
Sbjct: 438 RMPEAIGFFDKMLA-VGCAPDEITVNNLRSCLLKAGMPGEA 477
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 34/250 (13%)
Query: 109 RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH-- 166
+P T+N++ L + G+++EA LL+ + P+ TYNTL+ G ++ R
Sbjct: 174 KPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARS 233
Query: 167 -------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
DV SY ++I+GYCK R +E+ L EM++ G + T+N L
Sbjct: 234 LLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGF 293
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M + PD +T+ I+G ++ V +AM ++ + ++
Sbjct: 294 GKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASL 353
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
T + L+ GLC RL A DI +L ++ + P YN +I G+CK G +AN ++
Sbjct: 354 YTYSVLVSGLCNNNRLHKARDILRLLNES-DIVPQPFIYNPVIDGYCKSGNVDEANKIVA 412
Query: 316 DMEETGLEPN 325
+ME +P+
Sbjct: 413 EMEVNRCKPD 422
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN L N + V DAV L RE++ + T N L I GL
Sbjct: 145 YNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNIL-----------------IRGL 187
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+ G + EA K+ + + C+ + T N LI GLC I + A + + N PD
Sbjct: 188 CRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPD 247
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV+Y ++I G+CK + ++ + L +M +G PN
Sbjct: 248 VVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPN 282
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G +L ++ S PN TFN+LI G G + A L+ K+ V C P+V TF +L
Sbjct: 267 GSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSL-- 324
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDG 126
+ F V +D K M ++ + + T +V+ L +
Sbjct: 325 --------INGHF------RVRQVHQAMDMWHK---MNEKNIGASLYTYSVLVSGLCNNN 367
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYN 172
++ +A +L ++ + D+ P YN ++DG+ C+ D ++
Sbjct: 368 RLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFT 427
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
ILI G+C + +A+ +ML+ G D T N L
Sbjct: 428 ILIIGHCMKGRMPEAIGFFDKMLAVGCAPDEITVNNL 464
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 154/334 (46%), Gaps = 57/334 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALN 70
+P+ V +N+++ G GRI L++ + NV +FN + ++
Sbjct: 22 SPDAVVYNAMLNGYFRVGRIKNCFELWELMGR-KGSRNVASFNIMMRGLFDNGEVDQVIS 80
Query: 71 LFEEMV-NEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMT 119
++E M+ N FG D +T ++DGLCK+G+ +G D + + M
Sbjct: 81 IWELMIENGFG----EDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLDAFSYSAMI 136
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------------GCRH 166
+ L K+ K++EA +L M++ PNT YN L++GF SK C
Sbjct: 137 NGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREMGTHCSP 196
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAIN-- 214
++ +YN LING CK +A L +EML +G + +TY+ L MAIN
Sbjct: 197 NIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAINLW 256
Query: 215 ------NVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
PD ++ I GL G A+ ++ + C + T N L++G K
Sbjct: 257 NQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYNTLMEGFYKD 316
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
G L+ A I+ +++N GL PD+++YNI + G C
Sbjct: 317 GDLRNALAIWAHILRN-GLQPDIISYNITLKGLC 349
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 77/299 (25%)
Query: 85 PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PD V +++G + G M +G R +V + N+M L +G++++ +
Sbjct: 23 PDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSR-NVASFNIMMRGLFDNGEVDQVISI 81
Query: 135 LEVMIQRDVNPNTCTYNTLMDG-----FAWWS---------KGCRHDVYSYNILINGYCK 180
E+MI+ ++ TY L+DG +A S KG D +SY+ +ING CK
Sbjct: 82 WELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGVLDAFSYSAMINGLCK 141
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ +++AVS+ M+ G + P++HVY I+G +A
Sbjct: 142 EAKLDEAVSVLSGMVKNGCK-----------------PNTHVYNALINGFVGASKFEDAT 184
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI---------------FHMLMQN- 284
+VF +G H C I T N LI+GLCK R A+D+ + +LM+
Sbjct: 185 RVFREMGTH-CSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGL 243
Query: 285 ------------------PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G PDV +NI+IHG C G+ Q A L +M PN
Sbjct: 244 CLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPN 302
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWS----KGCRHDVY 169
+ G + A + M + V+P+ YN +++G F W KG R +V
Sbjct: 2 ESGDXDGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSR-NVA 60
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
S+NI++ G + V+ +S+ M+ G D+ TY L +
Sbjct: 61 SFNIMMRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIA 120
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
D+ Y+ I+GL K + EA+ V S + + C N LI+G +
Sbjct: 121 EGKGGVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKF 180
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ A +F + + +P++VTYN +I+G CK + +A L+ +M E G +P
Sbjct: 181 EDATRVFREMGTH--CSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKP 231
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +++ F P++ N LI GLC+ G+ A L+ +N + C PN++T+NTL
Sbjct: 255 LWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYNTL----- 309
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
++G KDG ++ G++PD+++ N+
Sbjct: 310 ------------------------MEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITL 345
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
L ++ A L + + + P T
Sbjct: 346 KGLCSCNRISGAILFLHDAVTKKLVPTIIT 375
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 147/327 (44%), Gaps = 63/327 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L+ EG I A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTL-----------MNG 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + N+ +G M G++PDV T +V+ + L K+ KM++AN L + M
Sbjct: 181 Y--------IKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + PN T+ TL+D G+CK+ V+ A+ + ++MLS+
Sbjct: 233 LDNGLVPNGVTFTTLID---------------------GHCKNGRVDLAMEIYKQMLSQS 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M++ + PD YTT IDG K G + A
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAF 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
+ + L LI GLC+ GR + D ML M + GL P++ TY ++I
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPEIGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK+G + LL +M+ G P+
Sbjct: 389 NEFCKKGDVWTGSKLLKEMQRDGYAPS 415
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + ++ G + N++ + K+G++ A + + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKM 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML G+ P+ +TT IDG KNG V AM+++
Sbjct: 223 DDANELFDEMLDNGL-----------------VPNGVTFTTLIDGHCKNGRVDLAMEIYK 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + + T N LI GLCK G LK A D+ M GL PD +TY +I G CKE
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDE-MSMKGLKPDKITYTTLIDGSCKE 324
Query: 305 GQHQKA 310
G + A
Sbjct: 325 GHLETA 330
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA- 68
L +L + PN VTF +LI G C GR+ A ++K++ P++IT+NTL
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287
Query: 69 ----LNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
L +++ +E + KPD +T T +IDG CK+G M+ + +R D V
Sbjct: 288 KKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDV 347
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ L ++G+ +A +L M+ S G + ++ +Y +
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREML---------------------SVGLKPEIGTYTM 386
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+IN +CK +V L +EM +G T
Sbjct: 387 IINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVY 223
RH + SY +I+ C + + +A +L + ++S + A+ + + D +V+
Sbjct: 10 RHTLQSYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQISDIYVF 69
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
+ I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + ++
Sbjct: 70 SGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLE 129
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + +NI++H F KEG+ + A + + + GL P+
Sbjct: 130 -CGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 63/332 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V+++NTL
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTL--------- 183
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M+ G++PDV T +V+ + L K+ KM++AN
Sbjct: 184 --MNGY--------IRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 233
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+D G+CK+ V+ A+ + ++
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLID---------------------GHCKNGRVDLAMEIYKQ 272
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 273 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGD 332
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A + + L LI GLC+ GR + D ML M + GL PD T
Sbjct: 333 LDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPDART 389
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++I+ FCK+G K LL +M+ G P+
Sbjct: 390 YTMIINEFCKKGDVWKGXKLLKEMQRDGHVPS 421
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 60/283 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L +L S P++ T++ LI GLC E ++ +A LF ++ V PN +T
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 249
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG------FMMD 105
F TL +A+ ++++M+++ PD++T +I GLCK G ++D
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQ---SLSPDLITYNTLIYGLCKKGDLKQAHHLID 306
Query: 106 Q----GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ G++PD +T + D K+G ++ A + MIQ ++
Sbjct: 307 EMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI------------------ 348
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
R D +Y LI+G C++ DA + REMLS G++ PD+
Sbjct: 349 ---RLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK-----------------PDAR 388
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDG 264
YT I+ K G V + K+ + V ++ T N L++G
Sbjct: 389 TYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 157 FAWWSKGC----RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
F W S RH ++ Y +I+ C + + +A SL + ++S + A+ +F A
Sbjct: 4 FTWLSSPANSTFRHTLHXYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASA---VFAA 60
Query: 213 INNV----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
I D +V++ I ++GF+ +A++ + HK + +TC +++ L K+
Sbjct: 61 IXETXGTQRSDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL 120
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+ W + +++ G + +NI++H FCK+G + A + + + GL P+
Sbjct: 121 KYFKLVWGFYEEILE-CGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 63/332 (18%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + ++ FN L+ C +G I A +F + + P+V+++NTL
Sbjct: 115 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTL--------- 165
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
+N + + ++ +G M+ G++PDV T +V+ + L K+ KM++AN
Sbjct: 166 --MNGY--------IRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANE 215
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
L + M+ + + PN T+ TL+D G+CK+ V+ A+ + +
Sbjct: 216 LFDEMLVKGLIPNGVTFTTLID---------------------GHCKNGRVDLAMEIYKR 254
Query: 194 MLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGF 235
MLS+ + D TYNTL M++ + PD YTT IDG K G
Sbjct: 255 MLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 314
Query: 236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVT 293
+ A K + L LI GLC+ G+ + D ML M + GL PD+ T
Sbjct: 315 LDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQ---SVDAEKMLREMLSVGLKPDIGT 371
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y ++I+ FCK+G K + LL +M+ G P+
Sbjct: 372 YTMIINEFCKKGDVWKGSKLLKEMQRNGHAPS 403
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 133/312 (42%), Gaps = 82/312 (26%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G GF L +L + P++ T++ LI GLC E ++ +A LF ++ V PN +T
Sbjct: 172 LGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 231
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
F TL IDG CK+G M+ Q + P
Sbjct: 232 FTTL-----------------------------IDGHCKNGRVDLAMEIYKRMLSQSLLP 262
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS 170
D++T N + L K+G +++A+ L++ M + + P+ TY TL+D GC
Sbjct: 263 DLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLID-------GC------ 309
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
CK+ +++ A + M+ E IR D Y L I GL
Sbjct: 310 --------CKEGDLDTAFKHRKRMIQENIRLDDVAYTAL-----------------ISGL 344
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLT 288
+ G ++A K+ + + I T +I+ CK G + W +L MQ G
Sbjct: 345 CQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV---WKGSKLLKEMQRNGHA 401
Query: 289 PDVVTYNIMIHG 300
P VVTYN++++G
Sbjct: 402 PSVVTYNVLMNG 413
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-YNTLFMAINNVPPDSHVYTTY 226
++SY +I+ C + + +A SL + ++S + A+ + T+ D +V++
Sbjct: 1 LHSYCTMIHFLCTHQMLSEAKSLIQLVVSRKGKGSASVVFATILETKGTQRSDIYVFSGL 60
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I ++GF+ +A++ + HK + +TC +++ L K+ K+ W + +++ G
Sbjct: 61 ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILE-CG 119
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +NI++H FCK+G + A + + + GL P+
Sbjct: 120 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 158
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 32/221 (14%)
Query: 128 MEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVE 185
+ EA L+++++ R + + T+++ +KG R D+Y ++ LI Y + +
Sbjct: 17 LSEAKSLIQLVVSRKGKGSASVVFATILE-----TKGTQRSDIYVFSGLITAYLESGFLR 71
Query: 186 DAVS---------------LCREMLSEGIRADATTYNTLFMAINN------VPPDSHVYT 224
DA+ CR+ML ++ Y L P + +
Sbjct: 72 DAIECYRLTREHKLWVPFDTCRKMLEHLMK---LRYFKLVWGFYEEILECGYPASLYFFN 128
Query: 225 TYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN 284
+ K+G + A VF AI ++ + N L++G ++G L + + ++ N
Sbjct: 129 ILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLAN 188
Query: 285 PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ PDV TY+++I+G CKE + AN L +M GL PN
Sbjct: 189 -GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPN 228
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 153/352 (43%), Gaps = 66/352 (18%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLF 72
R++ P+M T+++L+ L G + L +++ PN+ T+ T+ + AL
Sbjct: 225 RMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTY-TICIRALGRA 283
Query: 73 EEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
+ + +G+ C PDV+T T +ID LC
Sbjct: 284 RRIDDAWGIFKEMDDEGCGPDVITYTVLIDALC-------------------------AA 318
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------WWSK----GCRHDVYSY 171
GK+++A L M +P+ TY TLMD F +W++ G DV +Y
Sbjct: 319 GKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTY 378
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
ILI CK +V+ A + M ++GI + TYNT+ M
Sbjct: 379 TILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMES 438
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
V P + Y +ID K+G +A+ F + + +I CN + L + GR+
Sbjct: 439 LGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISE 498
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A DIF+ L GL+PD VTYN+++ + K GQ KA LL +M G EP+
Sbjct: 499 AEDIFNDL-HKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD 549
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 152/354 (42%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
PN+ T+ I+ L RI +A +FK+++ C P+VIT+ L AL A ++ E
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDK-AKE 326
Query: 79 FGVICK-----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
V + PD VT ++D K G M G PDVVT ++ + L
Sbjct: 327 LYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALC 386
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
K G ++ A +L+VM + + PN TYNT++ G + G + +
Sbjct: 387 KSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAF 446
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN-------------- 215
SY + I+ Y K + A+ M GI N +
Sbjct: 447 SYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDL 506
Query: 216 ----VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ PDS Y + K G + +A ++ S + + C + N LI+ L K GR+
Sbjct: 507 HKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRV 566
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
AW +F L +N L P VVTYNI++ G KEG+ KA L M E+G PN
Sbjct: 567 DAAWKMFGRL-KNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPN 619
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/411 (26%), Positives = 171/411 (41%), Gaps = 91/411 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + + GR+ P +VT+N L+ GL EG+IL+A LF + C PN ITF
Sbjct: 564 GRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITF 623
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------FM 103
N+L +AL +F M + C PDV+T II GL ++G
Sbjct: 624 NSLLDCLSKNDAVDLALKMFCRMTM---MNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQ 680
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLMD------- 155
M + + PD VTL + + + G++E+A ++E + Q + N+ + LM+
Sbjct: 681 MKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAE 740
Query: 156 -----------------------------------------GFAWWSK--GCRHDVYSYN 172
F ++K G + SYN
Sbjct: 741 IEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYN 800
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------INNV---------- 216
L++G E A+ L +M S G + TYN L A IN +
Sbjct: 801 CLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSR 860
Query: 217 --PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA 274
P++ + I L K+ + +A+ ++ + + T T LIDGL K GR + A
Sbjct: 861 GCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQA 920
Query: 275 WDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
IF ++ + G P+ V YNI+I+GF K G+ A L M + G+ P+
Sbjct: 921 MKIFEEML-DYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPD 970
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 145/349 (41%), Gaps = 56/349 (16%)
Query: 29 LIKGLCTEGRILEAARLFKKLNV-FCCDPNVITFNTL---------ALVALNLFEEMVNE 78
LIK LC + L+A +F K P + ++N L AL LFE+M +
Sbjct: 766 LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKS- 824
Query: 79 FGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNLSKDGKM 128
P+ T ++D K M +G P+ +T N++ L K +
Sbjct: 825 --AGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNL 882
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNIL 174
+A L ++ D +P CTY L+DG + GC + YNIL
Sbjct: 883 NKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNIL 942
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNV 216
ING+ K ++ A L ++M+ EGIR D +Y L + + +
Sbjct: 943 INGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL 1002
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
PD+ Y I+GL K+ + EA+ +FS + N + T N LI L G++ +A
Sbjct: 1003 DPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVK 1062
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ L Q GL P V TYN +I G G +A + M G PN
Sbjct: 1063 MYEEL-QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPN 1110
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 157/360 (43%), Gaps = 58/360 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
+P+ VT+N L+K G+I +A +L ++ C+P+V+ N+L L +
Sbjct: 511 LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAW 570
Query: 77 NEFGVI----CKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
FG + P VVT ++ GL K+ G M + G P+ +T N + D L
Sbjct: 571 KMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCL 630
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------FAWW-----SKGCRHDVY 169
SK+ ++ A + M + NP+ TYNT++ G +A+W K D
Sbjct: 631 SKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYV 690
Query: 170 SYNILINGYCKDRNVEDAVSLCRE--------------------MLSEGIRADATTYNTL 209
+ LI G + VEDA+ + E +L+E +A ++ +
Sbjct: 691 TLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEI 750
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA----IGNHKCVLTIETCNCLIDGL 265
+ N+V D HV I L K L+A VF +G H T+E+ NCL+DGL
Sbjct: 751 -LVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHP---TLESYNCLMDGL 806
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F M++ G P+ TYN+++ K + K L +M G EPN
Sbjct: 807 LGSNFTEKALELFED-MKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPN 865
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 56/349 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------AL 69
+ P++VT+ LI+ LC G + A + + PN+ T+NT+ L+ AL
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEAL 430
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMT 119
L E M GV KP + ID K G M +G+ P + N
Sbjct: 431 ELLENM-ESLGV--KPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCR 165
L++ G++ EA + + + ++P++ TYN LM ++ SKGC
Sbjct: 488 YTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE 547
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV N LIN K V+ A + + + + TYN L
Sbjct: 548 PDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALEL 607
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M + PP++ + + +D L KN V A+K+F + C + T N +I GL +
Sbjct: 608 FGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
GR+ A+ FH + + L+PD VT +I G + G+ + A ++++
Sbjct: 668 EGRIDYAFWFFHQMKK--FLSPDYVTLCTLIPGVVRHGRVEDAIKVVME 714
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 162/396 (40%), Gaps = 88/396 (22%)
Query: 15 LMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV----- 67
+M+C P+++T+N++I GL EGRI A F ++ F P+ +T TL +V
Sbjct: 648 MMNC-NPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFL-SPDYVTLCTLIPGVVRHGRV 705
Query: 68 --ALNLFEEMVNE---------FG--------------VICKPDVVTCTNI--------- 93
A+ + E V++ +G I +++ C ++
Sbjct: 706 EDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLP 765
Query: 94 -IDGLCK-----------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQR 141
I LCK D F + G+ P + + N + D L E+A L E M
Sbjct: 766 LIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSA 825
Query: 142 DVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVEDA 187
+PN TYN L+D S+GC + ++NI+I+ K N+ A
Sbjct: 826 GTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKA 885
Query: 188 VSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDG 229
+ L E++S TY L M P+S +Y I+G
Sbjct: 886 LDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILING 945
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
K+G + A ++F + +++ L++ LC GR+ A F L + GL P
Sbjct: 946 FGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEEL-KLTGLDP 1004
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I+G K + +A L +M+ G+ P+
Sbjct: 1005 DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPD 1040
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 148/374 (39%), Gaps = 90/374 (24%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ N+ + L GRI EA +F L+ P+ +T+N L A L
Sbjct: 478 PSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQL 537
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDN 121
EM+++ C+PDV+ ++I+ L K G + + + P VVT N++
Sbjct: 538 LSEMISKG---CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTG 594
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHD 167
L K+GK+ +A L M + PNT T+N+L+D + C D
Sbjct: 595 LGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPD 654
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
V +YN +I G ++ ++ A +M F++ PD T I
Sbjct: 655 VLTYNTIIYGLIREGRIDYAFWFFHQMKK-------------FLS-----PDYVTLCTLI 696
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLT--------------------------IETCNC- 260
G+ ++G V +A+KV + C+ T I CN
Sbjct: 697 PGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSV 756
Query: 261 ---------LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
LI LCK + A ++F +N G+ P + +YN ++ G +KA
Sbjct: 757 CQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL 816
Query: 312 GLLLDMEETGLEPN 325
L DM+ G PN
Sbjct: 817 ELFEDMKSAGTHPN 830
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 56/319 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV-------ALNL 71
PN T+N L+ RI + L+ ++ C+PN IT N + ALV AL+L
Sbjct: 829 PNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDL 888
Query: 72 FEE-MVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
+ E M +F P T +IDGL K G M+D G P+ V N++ +
Sbjct: 889 YYELMSGDFS----PTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILIN 944
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD----------GFAWWSK----GCRH 166
K G+++ A L + M++ + P+ +Y L++ ++ + G
Sbjct: 945 GFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDP 1004
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
D SYN +ING K R +++A+SL EM + GI D TYN L + +
Sbjct: 1005 DTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIA---------- 1054
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
G V A+K++ + ++ T N LI G G A+ +F +M G
Sbjct: 1055 -------GKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMV-VG 1106
Query: 287 LTPDVVTYNIMIHGFCKEG 305
+P+ T+ + + + + G
Sbjct: 1107 CSPNTETFAQLPNKYPRAG 1125
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
F+P T+ LI GL GR +A ++F+++ + C PN + +N L A
Sbjct: 897 FSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFAC 956
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMT 119
LF++MV E G+ +PD+ + T +++ LC G + + G+ PD V+ N +
Sbjct: 957 ELFKKMVKE-GI--RPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFII 1013
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
+ L K +++EA L M R ++P+ TYN L+ K G
Sbjct: 1014 NGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLE 1073
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
V++YN LI G+ N + A S+ ++M+ G + T+ L
Sbjct: 1074 PSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQL 1117
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 127/326 (38%), Gaps = 70/326 (21%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+ T+ ++ K L +G I A +K+ N ++N L +
Sbjct: 165 NLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHL-------------- 210
Query: 82 ICKPDVVTCTNIIDGLCKDGF-----MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLE 136
++ G C + M+ +GM+P + T + + L + G + LLE
Sbjct: 211 -----------LLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLE 259
Query: 137 VMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
M S G R ++Y+Y I I + R ++DA + +EM
Sbjct: 260 EM---------------------KSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDD 298
Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
EG D TY L M ++ PD Y T +D K G +
Sbjct: 299 EGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLET 358
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+ ++ + + T LI+ LCK G + A+D+ +M G+ P++ TYN MI
Sbjct: 359 VKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLD-VMTTKGIFPNLHTYNTMI 417
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
G K + +A LL +ME G++P
Sbjct: 418 CGLLKARRLDEALELLENMESLGVKP 443
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 37/251 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L +++ P++ ++ L++ LC GRI EA + F++L + DP+ +++N +
Sbjct: 958 LFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI----- 1012
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
+N G + D + L M ++G+ PD+ T N + +L GK++
Sbjct: 1013 ------INGLGKSRRLD--------EALSLFSEMKNRGISPDLYTYNALILHLGIAGKVD 1058
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GCRHDVYSYNILI 175
A + E + + P+ TYN L+ G F+ + K GC + ++ L
Sbjct: 1059 VAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLP 1118
Query: 176 NGYCKDRNVED---AVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
N Y + V + AV + + IR + Y F+ + + P H+ G Y
Sbjct: 1119 NKYPRAGLVHNPFGAVFIGLFFIFTSIRLNQFYYIFRFLFLVFINPCHHLLADVPKG-YL 1177
Query: 233 NGFVLEAMKVF 243
+V E MK F
Sbjct: 1178 ALYVGEEMKRF 1188
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA------INNVP-- 217
H + N ++ + R +ED V + M + I + TTY T+F A I P
Sbjct: 129 HTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFA 188
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+++ Y I L GF EA+KV+ + + +++T + L+ L +
Sbjct: 189 LRKMTEVGFILNAYSYNGLIHLLLP-GFCNEALKVYKRMISEGMKPSMKTYSALMVALGR 247
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + ++ M++ GL P++ TY I I + + A G+ +M++ G P+
Sbjct: 248 RGDTRKIMNLLEE-MKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPD 304
>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
Length = 938
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 50/363 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + +L + P++VT+N L G C G ++E L ++ +PN +T+
Sbjct: 566 GEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTY 625
Query: 62 N------------TLALVALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGFMM---- 104
+ A V N+ EE ++ V+ V C ++ G +M+
Sbjct: 626 GIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMV--CGYLLSGWTDHAYMLFVRV 683
Query: 105 -DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTL---------M 154
QG D + + + ++L + G ++ A+ + ++M++ DV P+ +Y+ L M
Sbjct: 684 ARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISYSKLISIYCQNGDM 743
Query: 155 DGFAWW-----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
D W +G DV Y IL+NGYCK +++A L +M + GI+ D Y L
Sbjct: 744 DKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVL 803
Query: 210 FMAINNVPPDSHVYTTYIDGLY-----KNGFVLEAM--KVFSAIGNHKCVLTIETCNCLI 262
D H+ T G + F+L A K+ S++ + + + LI
Sbjct: 804 L--------DGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLI 855
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
DG CK L A ++F ++Q GLTPD Y +I+G+C +G+ KA LL +M + G+
Sbjct: 856 DGKCKAEYLVEARELFDEMLQK-GLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGI 914
Query: 323 EPN 325
EP+
Sbjct: 915 EPD 917
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 55/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +V+L I + +N ++ GLC E R+ EA +L + +P+V +
Sbjct: 391 GKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGY 450
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVT----CTNIIDGLCKDGF-----M 103
+ L + A++ +E MV+ G+ +V+ C + G+ +
Sbjct: 451 SYLIRSYCKMGNLINAVDHYEAMVSH-GIETNCHIVSYLLQCFRKL-GMTSEAIAYFLKF 508
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
D G+ D V N+ D K+G M EA LL M + P+ Y L+ G+
Sbjct: 509 KDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGEM 568
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY--- 206
D+ +YNIL +G+CK V + L M +G+ ++ TY
Sbjct: 569 QNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIA 628
Query: 207 -------------NTLFMAINNVPPDSHV---YTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
LF + D H+ Y++ + G +G+ A +F +
Sbjct: 629 IVGFCRGGNLSEAEVLFNVVEEKGID-HIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQG 687
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
++ +C+ LI+ LC++G ++ A ++ +++++ + PDV++Y+ +I +C+ G KA
Sbjct: 688 NLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEH-DVVPDVISYSKLISIYCQNGDMDKA 746
Query: 311 NGLLLDMEETGL 322
+ DM + GL
Sbjct: 747 HLWFHDMVQRGL 758
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 61/324 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALNL 71
P++ T+N L+K + G + ++ F P+V TF + AL +
Sbjct: 305 PSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQV 364
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMRPDVVTLNVMTDNLSKDG 126
+ EM E GV KPD ++ + GLC G +++ Q + + V + M N+ DG
Sbjct: 365 WAEM-TEMGV--KPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDG 421
Query: 127 -----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
+++EA LLE ++ NP DVY Y+ LI YCK
Sbjct: 422 LCKEMRLDEAEKLLENKARQGSNP---------------------DVYGYSYLIRSYCKM 460
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N+ +AV M+S GI + H+ + + K G EA+
Sbjct: 461 GNLINAVDHYEAMVSHGIETNC-----------------HIVSYLLQCFRKLGMTSEAIA 503
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
F + L N +D CK G + A + + M+ GLTPD + Y +I G+
Sbjct: 504 YFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNE-MKYGGLTPDKIHYTCLISGY 562
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C +G+ Q A + +M + +EP+
Sbjct: 563 CLKGEMQNAQQVFEEMLKANIEPD 586
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++L R+ + + + LI LC G + A+ + K + P+VI++
Sbjct: 671 GWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHDVVPDVISY 730
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
+ L + A F +MV + DV+ T +++G CK G + +
Sbjct: 731 SKLISIYCQNGDMDKAHLWFHDMVQRGLSV---DVIVYTILMNGYCKAGRLQEACQLFVQ 787
Query: 107 ----GMRPDVVTLNVMTDNLSKD-------GKMEEA---------NCLLEVMIQRDVNPN 146
G++PDV+ V+ D K+ G +E N LL M + P+
Sbjct: 788 MTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPD 847
Query: 147 TCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
Y L+DG KG D Y+Y LINGYC + A L +
Sbjct: 848 VPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQ 907
Query: 193 EMLSEGIRADATTYNTL 209
EM+ +GI D T++ L
Sbjct: 908 EMIDKGIEPDELTFSVL 924
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 53/343 (15%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV----- 67
R+ F+P++VT+N LI LC G++ A ++ +L C+P VIT+ L
Sbjct: 171 RMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHG 230
Query: 68 ----ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMRPDVVTLN 116
A+ L +EM++ +PD+ T I+ G+CK G F+ + P + N
Sbjct: 231 SIDDAMRLLDEMMSRG---LQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYN 287
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWS---------K 162
++ L +G+ E L+ MI + PN TY+ L+ DG A + K
Sbjct: 288 LLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEK 347
Query: 163 GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
G D Y Y+ LI+ +CK+ V+ A+ +M+S G D YNT+
Sbjct: 348 GLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTI------------- 394
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG-RLKIAWDIFHML 281
+ L K G EA+ +F + C + N + L G +++ I ML
Sbjct: 395 ----MGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEML 450
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
G+ PD +TYN +I C++G +A GLL+DME T +P
Sbjct: 451 SN--GVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQP 491
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 150/354 (42%), Gaps = 52/354 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + L +++ + P+++ LIKGL T R +A R+ + L + DP+ +
Sbjct: 91 GKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG-DPDSFAY 149
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N + C+ D N + + + M +G PDVVT N++ +
Sbjct: 150 NAV--------------ISGFCRSDRFDAANRV--ILR---MKYRGFSPDVVTYNILIGS 190
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L GK++ A +++ +++ + NP TY L++ S+G + D
Sbjct: 191 LCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPD 250
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREM----------------LSEGIRADATTYNTLFM 211
+Y+YN+++ G CK V+ A + L+EG R +A M
Sbjct: 251 MYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEG-RWEAGERLMSDM 309
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P+ Y+ I L ++G EA+ V + + LI CK G++
Sbjct: 310 IVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKV 369
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A F M + G PD+V YN ++ CK+G+ +A + +EE G PN
Sbjct: 370 DLAIG-FVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPN 422
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 28/176 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
GFV ++ + + P++V +N+++ LC +GR EA +FKKL C PN ++NT+
Sbjct: 374 GFV--DDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFG 431
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------- 108
+ AL + EM++ GV PD +T ++I LC+DG M+D+ +
Sbjct: 432 ALWSSGDKIRALTMILEMLSN-GV--DPDRITYNSLISSLCRDG-MVDEAIGLLVDMERT 487
Query: 109 --RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--GFAWW 160
+P V++ N++ L K ++ +A +L VM+ PN TY L++ G+A W
Sbjct: 488 EWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGW 543
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 45/340 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
L+ ++ +PN TF+ LI LC + A + +++ + C+P+ + +N + +L
Sbjct: 314 LMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLS 373
Query: 68 ALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMD------QGMRPDV----VTLN 116
++ + ++CKPD + ++ G C+ D Q R D +T N
Sbjct: 374 ERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFN 433
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-----------WWSKGCR 165
++ D L ++G + A + E M + P+ TY++L++GF+ + S C+
Sbjct: 434 ILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK 493
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
D++SYN ++ G C+ EDA L EM+ + + PP+ +
Sbjct: 494 PDIFSYNAVLKGLCRAARWEDAGELIAEMVGK-----------------DCPPNEVTFNI 536
Query: 226 YIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
I+ L + G V A++V + N+ I T N LI+G + GRL A + +
Sbjct: 537 LINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---- 592
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PD ++YN + G C+ + Q A L+ +M PN
Sbjct: 593 SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPN 632
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 54/342 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGV 81
N+VT+ +LI G C GR+ +A RL + V P+ T+NT+ L L + ++ +
Sbjct: 157 NVVTYTALIDGYCRSGRLDDALRLIASMPVA---PDTYTYNTV-LKGLCIAKKWEEAEEL 212
Query: 82 I-------CKPDVVTCTNIIDGLCKDGF------MMDQ----GMRPDVVTLNVMTDNLSK 124
+ C P+ VT I C++G ++DQ G PDVV + + + S+
Sbjct: 213 MAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSE 272
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---AWWS-----------KGCRHDVYS 170
G +++A LL M+ PNT YN + G W KGC + +
Sbjct: 273 QGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEAT 329
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN--------------- 215
+++LI+ C++ V+ AV + +M G D YN + +++
Sbjct: 330 FSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV 389
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
PD+ + + G + +A ++ + + C L T N LID LC+ G + A
Sbjct: 390 CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYAT 449
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+F M TPD+VTY+ +++GF ++G + A L M
Sbjct: 450 QVFEQ-MPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSM 490
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 60/355 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF---------NTLALVALN 70
P+ T+N+++KGLC + EA L ++ C PN +TF N L A+
Sbjct: 187 APDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQ 246
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------RPDVVTLNVMTDNL 122
L ++M +G C PDVV + +I+G + G +DQ + +P+ V N L
Sbjct: 247 LLDQM-PRYG--CTPDVVIYSTLINGFSEQGH-VDQALDLLNTMLCKPNTVCYNAALKGL 302
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
+ E+ L+ M+++ +PN T++ L+ GC D
Sbjct: 303 CIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDT 362
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YNI+IN + V+DA+ L M+ + DA +N +
Sbjct: 363 VNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQ 419
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++ P + ID L +NG V A +VF + ++C I T + L++G + G
Sbjct: 420 MFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGL 479
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++A +F + PD+ +YN ++ G C+ + + A L+ +M PN
Sbjct: 480 VEVAIQLFRSM----PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPN 530
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLFEE 74
+TFN LI LC G + A ++F+++ + C P+++T+++L VA+ LF
Sbjct: 430 MTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRS 489
Query: 75 MVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM----------RPDVVTLNVMTDNLSK 124
M CKPD+ + ++ GLC+ D G P+ VT N++ ++L +
Sbjct: 490 MP------CKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQ 543
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-----------GCRHDVYSYNI 173
G ++ A +LE M P+ TYN L++GF+ + C+ D SYN
Sbjct: 544 KGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTMSCKPDAISYNS 603
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ G C+ +DA L EML + T+
Sbjct: 604 TLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 54/339 (15%)
Query: 24 VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL-----VALNLFEEMVNE 78
++ N LIK LC R+ +A R+ L + ++ NTL L E ++
Sbjct: 91 ISCNILIKKLCATRRLADAERVLDALKAAAAA-DAVSHNTLVAGYCRDGRLADAERVLGA 149
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMR--------PDVVTLNVMTDNLSKDGKMEE 130
+VVT T +IDG C+ G +D +R PD T N + L K EE
Sbjct: 150 ARATGAANVVTYTALIDGYCRSG-RLDDALRLIASMPVAPDTYTYNTVLKGLCIAKKWEE 208
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILIN 176
A L+ MI+ PN T+ T + F GC DV Y+ LIN
Sbjct: 209 AEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLIN 268
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+ + +V+ A+ L ML + + YN M P
Sbjct: 269 GFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ ++ I L +N V A++V + + C N +I+ L + GR+ A +
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
+ ++ PD + +N ++ GFC+ + A+ L+ M
Sbjct: 386 NSMV----CKPDALGFNAVLKGFCRAERWHDASELIAQM 420
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 63/327 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNE 78
+ ++ FN L+ C EG I A +F + + P+V++FNTL +N
Sbjct: 132 YPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTL-----------MNG 180
Query: 79 FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
+ + ++ +G M G++PDV T +V+ + L K+ K+++AN L + M
Sbjct: 181 Y--------IKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEM 232
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+ + PN+ ++ TL+DG +CKD V+ A+ + ++MLS+
Sbjct: 233 LDNGLVPNSVSFTTLIDG---------------------HCKDGRVDLAMEIYKQMLSQS 271
Query: 199 IRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAM 240
+ D TYNTL M++ + PD YTT IDG K G + A
Sbjct: 272 LSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAF 331
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML--MQNPGLTPDVVTYNIMI 298
+ + L LI GLC+ GR + D ML M + GL P++ TY ++I
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGR---SVDAEKMLREMLSVGLKPEIGTYTMII 388
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK+G + L+ +M+ G P+
Sbjct: 389 NEFCKKGDVWTGSKLMKEMQRDGYVPS 415
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 119/246 (48%), Gaps = 42/246 (17%)
Query: 89 TCTNIIDGLCKDGFM----------MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVM 138
TC +++ L K + ++ G + N++ + K+G++ A + + +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAI 162
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
+ + P+ ++NTLM+G+ A + G + DVY+Y++LING CK+ +
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKL 222
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS 244
+DA L EML G+ P+S +TT IDG K+G V AM+++
Sbjct: 223 DDANELFDEMLDNGL-----------------VPNSVSFTTLIDGHCKDGRVDLAMEIYK 265
Query: 245 AIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE 304
+ + + T N LI GLCK G LK A D+ + M GL PD +TY +I G CKE
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINE-MSMKGLKPDKITYTTLIDGSCKE 324
Query: 305 GQHQKA 310
G + A
Sbjct: 325 GDLETA 330
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 150 YNTLMDGFAWWSKGCRH--DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
Y L+ GF S C + +Y +NIL++ +CK+ + A S+ + G+R ++N
Sbjct: 116 YFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFN 175
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M + V PD + Y+ I+GL K + +A ++F + ++
Sbjct: 176 TLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDN 235
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
V + LIDG CK GR+ +A +I+ ++ L+PD++TYN +I+G CK G ++
Sbjct: 236 GLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKNGDLKQ 294
Query: 310 ANGLLLDMEETGLEPN 325
A L+ +M GL+P+
Sbjct: 295 AQDLINEMSMKGLKPD 310
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVA- 68
L +L + PN V+F +LI G C +GR+ A ++K++ P++IT+NTL
Sbjct: 228 LFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287
Query: 69 ----LNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVV 113
L ++++NE + KPD +T T +IDG CK+G M+ + +R D V
Sbjct: 288 KNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDV 347
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNI 173
+ L ++G+ +A +L M+ S G + ++ +Y +
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREML---------------------SVGLKPEIGTYTM 386
Query: 174 LINGYCKDRNVEDAVSLCREMLSEG 198
+IN +CK +V L +EM +G
Sbjct: 387 IINEFCKKGDVWTGSKLMKEMQRDG 411
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 128 MEEANCLLEVMIQRD-VNPNTCTYNTLMDGFAWWSKGC-RHDVYSYNILINGYCKDRNVE 185
+ EA L+++++ R + + +++ +KG R D+Y ++ LI Y + +
Sbjct: 29 LPEAKTLIQIVVSRKGKGSASAVFAAILE-----TKGTQRSDIYVFSGLITAYLESGFLR 83
Query: 186 DAVSLCREMLSEGIRADATTYNTLFMAINNV------------------PPDSHVYTTYI 227
DA+ R R T + + + P + + +
Sbjct: 84 DAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 143
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
K G + A VF AI ++ + N L++G K+G L + + + MQ G+
Sbjct: 144 HSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNA-MQASGV 202
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
PDV TY+++I+G CKE + AN L +M + GL PN
Sbjct: 203 QPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPN 240
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,046,166,074
Number of Sequences: 23463169
Number of extensions: 197333563
Number of successful extensions: 719208
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4112
Number of HSP's successfully gapped in prelim test: 5306
Number of HSP's that attempted gapping in prelim test: 510748
Number of HSP's gapped (non-prelim): 65374
length of query: 325
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 183
effective length of database: 9,027,425,369
effective search space: 1652018842527
effective search space used: 1652018842527
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)