BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048780
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ ++ GLC G A L K+ +P V+ +N
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + PDV T + + D K+GK+ EA L + M++R ++P+ TY++L++GF
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VE+ + + REM G+ + TYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPP+ Y T +DGL KNG + +AM VF + K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDVV YN MI GFC++G ++A+
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 557 ALFKEMKEDGTLPN 570
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 89/354 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ P++ TF++LI EG+++EA +L+ ++ DP+++T+
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A +FE MV++ C PDVVT +I G CK +G
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ + VT N++ L + G + A + + M+ V PN TYNTL+DG
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + + +Y+YNI+I G CK VED L + +G++ D YNT
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+I G C+
Sbjct: 542 ----------------------------------------------------MISGFCRK 549
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G + A +F M+ G P+ YN +I ++G + + L+ +M G
Sbjct: 550 GSKEEADALFKE-MKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGF 602
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF P++VT+N+LIKG C R+ E +F++++ N +T+N L +A
Sbjct: 392 CF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F+EMV++ GV P+++T ++DGLCK+G ++ M P + T N+M
Sbjct: 451 QEIFKEMVSD-GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V P+ YNT++ GF KG + + +
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC--RKGSKEEADALFKEMKED 565
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + E + L +EM S G DA+T + N+ D +
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLHDGRL 621
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 622 DKSFLDML 629
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 108/242 (44%), Gaps = 37/242 (15%)
Query: 120 DNLSKDG----KMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
+ LS++G K+++A L M++ P+ ++ L+ A +K
Sbjct: 50 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------- 210
G H+ Y+Y+ILIN +C+ + A+++ +M+ G + T ++L
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169
Query: 211 -------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLID 263
M + P++ + T I GL+ + EAM + + C + T +++
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229
Query: 264 GLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
GLCK G +A+++ + + Q L P V+ YN +I G CK A L +ME G+
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 288
Query: 324 PN 325
PN
Sbjct: 289 PN 290
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF----VLEAMKVFSAIGNHKCVLT 254
+R +A T + F Y + L +NG + +A+ +F + + +
Sbjct: 21 VRGNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPS 80
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
I + L+ + K+ + + + MQN G+ + TY+I+I+ FC+ Q A +L
Sbjct: 81 IIEFSKLLSAIAKMNKFDVVISLGEQ-MQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 139
Query: 315 LDMEETGLEPN 325
M + G EPN
Sbjct: 140 GKMMKLGYEPN 150
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 197 bits (502), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 194/374 (51%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R+++ P++VT+ ++I GLC G A L K+ + +V+ ++
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ G+ +PDV T +++I LC G M
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNK-GI--RPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D +K+GK+ EA L + MIQR ++PN TYN+L++GF
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LING+CK + V D + L R+M G+ + TY TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V P+ Y T +DGL KNG + +AM VF + K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N + +G+CK G+++ WD+F L G+ PDV+ YN MI GFCK+G ++A
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIAYNTMISGFCKKGLKEEAY 540
Query: 312 GLLLDMEETGLEPN 325
L + M+E G P+
Sbjct: 541 TLFIKMKEDGPLPD 554
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 126/276 (45%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L PN+VTFNSLI EG+++EA +LF ++ DPN++T+
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-------- 102
N+L + +E F ++ C PDVVT +I+G CK DG
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ P+++T N + D L K+GK+E+
Sbjct: 409 RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 468
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNILIN 176
A + E + + + P+ TYN + +G W KG + DV +YN +I+
Sbjct: 469 AMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMIS 528
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G+CK E+A +L +M +G D+ TYNTL A
Sbjct: 529 GFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRA 564
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 117/267 (43%), Gaps = 75/267 (28%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ PN+VT+NSLI G C R+ EA ++F + C P+V+T+NTL
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391
Query: 65 ------------------ALV---------------------ALNLFEEMVNEFGVICKP 85
LV A +F++MV++ GV P
Sbjct: 392 KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD-GV--HP 448
Query: 86 DVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLL 135
+++T ++DGLCK+G ++ M PD+ T N+M++ + K GK+E+ L
Sbjct: 449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508
Query: 136 EVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS----------------YNILINGYC 179
+ + V P+ YNT++ GF KG + + Y+ YN LI +
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFC--KKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTY 206
+D + + L +EM S DA+TY
Sbjct: 567 RDGDKAASAELIKEMRSCRFAGDASTY 593
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 146/377 (38%), Gaps = 118/377 (31%)
Query: 65 ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKD---------GFMMD-QGMRP 110
AL+ L L +E V+ FG + K P +V + ++ + K G M+ G+
Sbjct: 40 ALLHLKL-DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSH 98
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
++ T N+M + L + ++ A +L M++ P+ T N+L++GF +
Sbjct: 99 NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158
Query: 162 ----------------------------------------KGCRHDVYSYNILINGYCKD 181
KGC+ D+ +Y +ING CK
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218
Query: 182 -----------------------------------RNVEDAVSLCREMLSEGIRADATTY 206
R+V+DA++L EM ++GIR D TY
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
++L M + P+ + + ID K G ++EA K+F +
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
I T N LI+G C RL A IF +++ L PDVVTYN +I+GFCK +
Sbjct: 339 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVV 397
Query: 309 KANGLLLDMEETGLEPN 325
L DM GL N
Sbjct: 398 DGMELFRDMSRRGLVGN 414
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G I A L K+ + NV+ ++
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYS 264
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----M 103
T+ ALNLF EM N+ GV +P+V+T +++I LC D M
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEMENK-GV--RPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LING+CK + +++ V L REM G+ + TY TL
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V P+ Y T +DGL KNG + +AM VF + K
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
TI T N +I+G+CK G+++ WD+F L G+ PDV+ YN MI GFC++G ++A+
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPDVIIYNTMISGFCRKGLKEEAD 560
Query: 312 GLLLDMEETGLEPN 325
L M E G P+
Sbjct: 561 ALFRKMREDGPLPD 574
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 161/367 (43%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L G ++ S P++ FN L+ + + L +K+ N+ T+N L
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
+AL L +M+ + G +P +VT +++++G C M++ G RP
Sbjct: 132 RRSQISLALALLGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T + L K EA L++ M+QR PN TY +++G
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ +V Y+ +I+ CK R+ +DA++L EM ++G+R + TY++L
Sbjct: 249 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 308
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ + ID K G ++EA K++ + I T
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
+ LI+G C RL A +F LM + P+VVTYN +I+GFCK + + L +M
Sbjct: 369 SSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427
Query: 319 ETGLEPN 325
+ GL N
Sbjct: 428 QRGLVGN 434
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 122/271 (45%), Gaps = 71/271 (26%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S LL ++ PN+VTFN+LI EG+++EA +L+ ++ DP++ T++
Sbjct: 310 RWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 369
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-------------- 99
+L A ++FE M+++ C P+VVT +I+G CK
Sbjct: 370 SLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426
Query: 100 ----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
GF M+ G+ P+++T N + D L K+GK+
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 486
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNIL 174
E+A + E + + + P TYN +++G W KG + DV YN +
Sbjct: 487 EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTM 546
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATT 205
I+G+C+ E+A +L R+M +G D+ T
Sbjct: 547 ISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/205 (18%), Positives = 75/205 (36%), Gaps = 19/205 (9%)
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+Q NP + + G +W + Y ++ ++DA+ L M+
Sbjct: 21 LQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSR 80
Query: 199 IRADATTYNTLFMAINN------------------VPPDSHVYTTYIDGLYKNGFVLEAM 240
+N L AI + + + Y I+ + + A+
Sbjct: 81 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLAL 140
Query: 241 KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHG 300
+ + +I T + L++G C R+ A + +++ G PD +T+ +IHG
Sbjct: 141 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPDTITFTTLIHG 199
Query: 301 FCKEGQHQKANGLLLDMEETGLEPN 325
+ +A L+ M + G +PN
Sbjct: 200 LFLHNKASEAVALVDRMVQRGCQPN 224
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ V+ + S P + T+N +I+G+C G++ + LF L++ P+VI +
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543
Query: 62 NTL 64
NT+
Sbjct: 544 NTM 546
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL 49
G+ G+ L + + P+++ +N++I G C +G EA LF+K+
Sbjct: 519 GKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKM 566
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S VL+ R++ F P+ VT+ ++ LC G A LF+K+ +V+ +
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248
Query: 62 NTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ + AL+LF EM + G+ K DVVT +++I GLC DG
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMK-GI--KADVVTYSSLIGGLCNDGKWDDGAKMLRE 305
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + + PDVVT + + D K+GK+ EA L MI R + P+T TYN+L+DGF
Sbjct: 306 MIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENC 365
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC D+ +Y+ILIN YCK + V+D + L RE+ S+G+ + TYNT
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M VPP Y +DGL NG + +A+++F + +
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I N +I G+C ++ AW +F L + G+ PDVVTYN+MI G CK+G +A
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSL-SDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Query: 311 NGLLLDMEETGLEPN 325
+ L M+E G P+
Sbjct: 545 DMLFRKMKEDGCTPD 559
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 89/347 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G +L ++ P++VTF++LI EG++LEA L+ ++ P+ IT+
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFMM-----D 105
N+L N E F ++ C+PD+VT + +I+ CK DG +
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 413
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ P+ +T N + + GK+ A L + M+ R V P+ TY L+DG
Sbjct: 414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473
Query: 157 ----FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
F K + YNI+I+G C V+DA SL + +G++ D TYN +
Sbjct: 474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM-- 531
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
I GL K G + EA
Sbjct: 532 ---------------IGGLCKKGSLSEA-------------------------------- 544
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
D+ M+ G TPD TYNI+I H +GL+ +E
Sbjct: 545 ----DMLFRKMKEDGCTPDDFTYNILIRA------HLGGSGLISSVE 581
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 54/304 (17%)
Query: 68 ALNLFEEMVN--------EFGVICKPDVVTCT-NIIDGLCKDGFMMDQGMRPDVVTLNVM 118
A++LFE M+ +F +C T +++ G CK M G+ D+ T+ +M
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKG--MELNGIEHDMYTMTIM 111
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
+ + K+ A +L + P+T T++TL++GF +
Sbjct: 112 INCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 171
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------------- 210
R D+ + + LING C V +A+ L M+ G + D TY +
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 211 ----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M N+ Y+ ID L K+G +A+ +F+ + + T + LI GLC
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 267 KIGRLKIAWD-----IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
G+ WD + M+ +N + PDVVT++ +I F KEG+ +A L +M G
Sbjct: 292 NDGK----WDDGAKMLREMIGRN--IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 322 LEPN 325
+ P+
Sbjct: 346 IAPD 349
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 98/239 (41%), Gaps = 78/239 (32%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++VT++ LI C R+ + RLF++++ PN IT+NTL L A L
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG------------------------------ 101
F+EMV+ GV P VVT ++DGLC +G
Sbjct: 443 FQEMVSR-GV--PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 102 ---------------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+ D+G++PDVVT NVM L K G + EA+ L M +
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE------ 553
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
GC D ++YNILI + + +V L EM G AD++T
Sbjct: 554 ---------------DGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSST 597
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 33/233 (14%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYS 170
D K+ +A L E MIQ P +N L A + G HD+Y+
Sbjct: 48 DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
I+IN YC+ + + A S+ G D T++TL M
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
PD +T I+GL G V EA+ + + + T +++ LCK G
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+A D+F M+ + VV Y+I+I CK+G A L +ME G++ +
Sbjct: 228 LALDLFRK-MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 194 bits (493), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 188/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G A L K+ + +V+ FN
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C DV +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK-GVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 312 GLLLDMEETGLEPN 325
LL M+E G PN
Sbjct: 561 ALLKKMKEDGPLPN 574
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 159/364 (43%), Gaps = 55/364 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L G ++ S P++V FN L+ + + L +K+ + T+N L
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFC 131
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRP 110
+AL L +M+ + G +P +VT +++++G C D M++ G RP
Sbjct: 132 RRSQISLALALLGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D +T + L K EA L++ M+QR PN TY +++G
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 248
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
+ DV +N +I+ CK R+V+DA++L +EM ++GIR + TY++L
Sbjct: 249 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 308
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M + P+ + ID K G +EA K++ + I T
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L++G C RL A +F ++ PDVVTYN +I GFCK + + L +M
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMS 427
Query: 319 ETGL 322
GL
Sbjct: 428 HRGL 431
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L+ + DP++ T+
Sbjct: 309 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PDVVT +I G CK DG
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSK---DCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 209 LFMAI 213
+ +
Sbjct: 546 MISGL 550
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++VT+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 396 CF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 455 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+++ L + + V PN TYNT++ G SK + Y+
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC--SKRLLQEAYALLKKMKED 569
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 570 GPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRL 625
Query: 223 YTTYIDGL 230
+++D L
Sbjct: 626 DKSFLDML 633
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ G+ L + + PN+VT+N++I GLC++ + EA L KK+ PN T+
Sbjct: 519 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTY 578
Query: 62 NTL 64
NTL
Sbjct: 579 NTL 581
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 18/187 (9%)
Query: 139 IQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
+Q NP + + G +W + Y ++ D ++DA+ L M+
Sbjct: 21 LQGKGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSR 80
Query: 199 IRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+N L AI + D + G ++ +++ V + T
Sbjct: 81 PLPSIVEFNKLLSAIAKMKK--------FDVVISLGEKMQRLEI---------VHGLYTY 123
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+ C+ ++ +A + +M+ G P +VT + +++G+C + A L+ M
Sbjct: 124 NILINCFCRRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 319 ETGLEPN 325
E G P+
Sbjct: 183 EMGYRPD 189
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 189/374 (50%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ PN+VT+ ++ GLC G I A L K+ + +V+ FN
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF+EM + G+ +P+VVT +++I LC G M
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEMETK-GI--RPNVVTYSSLISCLCSYGRWSDASQLLSDM 246
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT N + D K+GK EA L + MI+R ++P+ TYN+L++GF
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C D+ +YN LI G+CK + VED L REM G+ D TY TL
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL NG + +A++VF + +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I +I+G+CK G++ WD+F L G+ P+VVTYN MI G C + Q+A
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSL-SLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 312 GLLLDMEETGLEPN 325
LL M+E G P+
Sbjct: 486 ALLKKMKEDGPLPD 499
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 55/353 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P++ FN L+ + + L +K+ N+ T+N L +AL L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC-----KDGF-----MMDQGMRPDVVTLNVMTDN 121
+M+ + G +P +VT +++++G C D M++ G RPD +T +
Sbjct: 68 LGKMM-KLGY--EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG 124
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L K EA L++ M+QR PN TY +++G + D
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 184
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +N +I+ CK R+V+DA++L +EM ++GIR + TY++L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M + P+ + ID K G +EA K+ + I T N LI+G C
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
RL A +F ++ PD+ TYN +I GFCK + + L +M GL
Sbjct: 305 RLDKAKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 121/284 (42%), Gaps = 54/284 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTFN+LI EG+ +EA +L + DP++ T+
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +FE MV++ C PD+ T +I G CK DG
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSK---DCFPDLDTYNTLIKGFCKSKRVEDGTELFRE 350
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M +G+ D VT + L DG + A + + M+ V P+ TY+ L+DG
Sbjct: 351 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 410
Query: 157 -------FAWWSKG-CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F + K + D+Y Y +I G CK V+D L + +G++ + TYNT
Sbjct: 411 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 470
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNG 234
+ M + PDS Y T I ++G
Sbjct: 471 MISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 41/246 (16%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------A 68
CF P++ T+N+LIKG C R+ + LF++++ + +T+ TL A
Sbjct: 321 CF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 379
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLC +G +M ++ D+ M
Sbjct: 380 QKVFKQMVSD-GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 436
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----------FAWWSK----GC 164
+ + K GK+++ L + + V PN TYNT++ G +A K G
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT 224
D +YN LI + +D + + L REM S DA+T + N+ D +
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGL----VANMLHDGRLDK 552
Query: 225 TYIDGL 230
+++D L
Sbjct: 553 SFLDML 558
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N L+ + K+ + + + MQ G++ ++ TYNI+I+ FC+ Q A LL M
Sbjct: 14 NKLLSAIAKMKKFDLVISLGEK-MQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 319 ETGLEPN 325
+ G EP+
Sbjct: 73 KLGYEPS 79
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLD 316
T N LI+ C+ ++ +A + +M+ G P +VT + +++G+C + A L+
Sbjct: 47 TYNILINCFCRRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 105
Query: 317 MEETGLEPN 325
M E G P+
Sbjct: 106 MVEMGYRPD 114
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 196/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++ T+ +++ GLC G I A L KK+ + +V+ +
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYT 259
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL ALNLF EM N+ G+ +P+VVT ++I LC G M
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNK-GI--RPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LI G+CK + VE+ + L REM G+ + TYNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + VPPD Y+ +DGL K G + +A+ VF + K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ WD+F L G+ P+V+ Y MI GFC++G ++A+
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEAD 555
Query: 312 GLLLDMEETGLEPN 325
L +M+E G PN
Sbjct: 556 ALFREMKEDGTLPN 569
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 57/343 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
++L A ++FE M+++ C P+VVT +I G CK +G
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M +G+ + VT N + L + G + A + + M+ V P+ TY+ L+DG + K
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSL-CREMLSEGIRADATTYN 207
D+Y+YNI+I G CK VED L C
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS--------------- 525
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
+++ V P+ +YTT I G + G EA +F + + T N LI +
Sbjct: 526 ---LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
G + ++ M++ G D T +++I+ +G+ +K+
Sbjct: 583 DGDKAASAELIKE-MRSCGFVGDASTISMVIN-MLHDGRLEKS 623
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 45/248 (18%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VA 68
CF PN+VT+N+LIKG C R+ E LF++++ N +T+NTL +A
Sbjct: 391 CF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVM 118
+F++MV++ GV PD++T + ++DGLCK G ++ M PD+ T N+M
Sbjct: 450 QKIFKKMVSD-GV--PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS-------- 170
+ + K GK+E+ L + + V PN Y T++ GF KG + + +
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC--RKGLKEEADALFREMKED 564
Query: 171 --------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
YN LI +D + + L +EM S G DA+T + + N+ D +
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI----NMLHDGRL 620
Query: 223 YTTYIDGL 230
+Y++ L
Sbjct: 621 EKSYLEML 628
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 109/275 (39%), Gaps = 68/275 (24%)
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------GCR----- 165
++ N+ D K+++A L M+Q P+ +N L+ A +K G R
Sbjct: 51 LSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLR 110
Query: 166 --HDVYSYNILI-----------------------------------NGYCKDRNVEDAV 188
+D+YSYNILI NGYC + + +AV
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
+L +M + + T+NTL M PD Y T ++GL
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K G + A+ + + K + +ID LC + A ++F M N G+ P+
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTE-MDNKGIRPN 289
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VVTYN +I C G+ A+ LL DM E + PN
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 324
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 191 bits (485), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 196/374 (52%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
RAS L+ R+++ P++VT+ ++ GLC G I A L KK+ +P V+ +N
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYN 260
Query: 63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ AL ALNLF EM N+ G+ +P+VVT ++I LC G M
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNK-GI--RPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +YN LI G+CK + V++ + L REM G+ + TY TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + V PD Y+ +DGL NG V A+ VF + K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ WD+F L G+ P+VVTY M+ GFC++G ++A+
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPNVVTYTTMMSGFCRKGLKEEAD 556
Query: 312 GLLLDMEETGLEPN 325
L +M+E G P+
Sbjct: 557 ALFREMKEEGPLPD 570
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 71/279 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------- 99
++L A ++FE M+++ C P+VVT +I G CK
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421
Query: 100 -----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
GF M+ G+ PD++T +++ D L +GK
Sbjct: 422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK 481
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNI 173
+E A + E + + + P+ TYN +++G W KG + +V +Y
Sbjct: 482 VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 541
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+++G+C+ E+A +L REM EG D+ TYNTL A
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
I CF PN+VT+N+LIKG C R+ E LF++++ N +T+ TL
Sbjct: 388 ISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
A +F++MV++ GV+ PD++T + ++DGLC +G ++ M PD+ T
Sbjct: 447 CDNAQIVFKQMVSD-GVL--PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
N+M + + K GK+E+ L + + V PN TY T+M GF
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK 563
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
+G D +YN LI + +D + + L REM S DA+T
Sbjct: 564 EEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAST 608
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 33/257 (12%)
Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
G M+ P +V + + ++K K + L E M ++ N TY+ L++ F
Sbjct: 70 GDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRR 129
Query: 161 SK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
S+ G D+ + N L+NG+C + DAVSL +M+ G + D+ T+
Sbjct: 130 SQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTF 189
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
NTL M + PD Y ++GL K G + A+ + +
Sbjct: 190 NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ 249
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
K + N +ID LC + A ++F M N G+ P+VVTYN +I C G+
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTE-MDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 309 KANGLLLDMEETGLEPN 325
A+ LL DM E + PN
Sbjct: 309 DASRLLSDMIERKINPN 325
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 191 bits (484), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 58/374 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ +++ P++VT+ +++ GLC G I A L K+ NV+ FN
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFN 262
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ VA++LF EM + G+ +P+VVT ++I+ LC G M
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETK-GI--RPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT N + D K+GK+ EA L E MIQR ++P+T TYN L++GF
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C ++ +YN LING+CK + VED V L REM G+ + TY T+
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M N VP D Y+ + GL G + A+ +F + +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I N +I+G+CK G++ AWD+F L + PDVVTYN MI G C + Q+A+
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVGEAWDLFCSL----SIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 312 GLLLDMEETGLEPN 325
L M+E G PN
Sbjct: 556 DLFRKMKEDGTLPN 569
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 121/272 (44%), Gaps = 36/272 (13%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
D++ + +D G M+ P +V N + ++K K E L E M ++
Sbjct: 60 DIIKVDDAVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH 116
Query: 146 NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY+ ++ F S+ G D+ + + L+NGYC + + DAV+L
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
+M+ G + D T+ TL M PD Y T ++GL K
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A+ + + + + + N +ID LCK +++A D+F M+ G+ P+VVT
Sbjct: 237 GDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE-METKGIRPNVVT 295
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
YN +I+ C G+ A+ LL +M E + PN
Sbjct: 296 YNSLINCLCNYGRWSDASRLLSNMLEKKINPN 327
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 63/303 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL +L PN+VTFN+LI EG+++EA +L +++ DP+ IT+
Sbjct: 307 GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITY 366
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK---------------- 99
N L N +E F + C P++ T +I+G CK
Sbjct: 367 NLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ 426
Query: 100 --------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
GF M+ + D++T +++ L GK++
Sbjct: 427 RGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDT 486
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW---WSKGCRHDVYSYNILINGYC 179
A + + + + ++ N YNT+++G AW S + DV +YN +I+G C
Sbjct: 487 ALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLC 546
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA 239
R +++A L R+M +G ++ TYNTL A N D I + +GFV +A
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA-NLRDCDRAASAELIKEMRSSGFVGDA 605
Query: 240 MKV 242
+
Sbjct: 606 STI 608
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 53/291 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+VT+NSLI LC GR +A+RL + +PNV+TFN L + A L
Sbjct: 291 PNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKL 350
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
EEM+ PD +T +I+G C FM+ + P++ T N + +
Sbjct: 351 HEEMIQR---SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
K ++E+ L M QR + NT TY T++ GF S D
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT----------------LFM 211
+ +Y+IL++G C ++ A+ + + + + + YNT LF
Sbjct: 468 IMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFC 527
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
+++ + PD Y T I GL + EA +F + + T N LI
Sbjct: 528 SLS-IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLI 577
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 183/376 (48%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S +L+ R++ + F PN VT+ ++K +C G+ A L +K+ + + +
Sbjct: 191 GKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
Query: 62 NTLALV---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ + A NLF EM + F K D++ T +I G C G
Sbjct: 251 SIIIDGLCKDGSLDNAFNLFNEMEIKGF----KADIIIYTTLIRGFCYAGRWDDGAKLLR 306
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ + + PDVV + + D K+GK+ EA L + MIQR ++P+T TY +L+DGF
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKGC ++ ++NILINGYCK ++D + L R+M G+ AD TYN
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M V PD Y +DGL NG +A+++F I
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKS 486
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K L I N +I G+C ++ AWD+F L G+ PDV TYNIMI G CK+G +
Sbjct: 487 KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-GVKPDVKTYNIMIGGLCKKGSLSE 545
Query: 310 ANGLLLDMEETGLEPN 325
A+ L MEE G PN
Sbjct: 546 ADLLFRKMEEDGHSPN 561
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 122/257 (47%), Gaps = 37/257 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-------LV--AL 69
+P+ VT+ SLI G C E ++ +A + + C PN+ TFN L L+ L
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
LF +M + GV+ D VT +I G C+ G M+ + +RPD+V+ ++
Sbjct: 408 ELFRKM-SLRGVVA--DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILL 464
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCR 165
D L +G+ E+A + E + + + + YN ++ G AW KG +
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTT 225
DV +YNI+I G CK ++ +A L R+M +G + TYN L A + D+
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA-HLGEGDATKSAK 583
Query: 226 YIDGLYKNGFVLEAMKV 242
I+ + + GF ++A V
Sbjct: 584 LIEEIKRCGFSVDASTV 600
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 60/232 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ TFN LI G C I + LF+K+++ + +T+NTL VA L
Sbjct: 385 PNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKEL 444
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------------FMMD---------- 105
F+EMV+ +PD+V+ ++DGLC +G +D
Sbjct: 445 FQEMVSRR---VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501
Query: 106 -------------------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPN 146
+G++PDV T N+M L K G + EA+ L M + +PN
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Query: 147 TCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEG 198
CTYN L+ + I G+ D + V + +MLS+G
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAS---TVKMVVDMLSDG 610
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY----TT 225
SY + D +DAV L +EM R ++ LF + V
Sbjct: 39 SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQM 98
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGNHKCVLTIE----TCNCLIDGLCKIGR 270
+ G+ N + L M FSA+G L E T + LI+GLC GR
Sbjct: 99 ELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKI-IKLGYEPDTVTFSTLINGLCLEGR 157
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++ +++ G P ++T N +++G C G+ A L+ M ETG +PN
Sbjct: 158 VSEALELVDRMVE-MGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPN 211
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 187/410 (45%), Gaps = 90/410 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S L+ R++ P+++T N+L+ GLC G+ EA L K+ + C PN +T+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+ +A+ L +M E + K D V + IIDGLCK G
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKM-EERNI--KLDAVKYSIIIDGLCKHGSLDNAFNLFNE 288
Query: 103 -----------------------------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
M+ + + P+VVT +V+ D+ K+GK
Sbjct: 289 MEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK 348
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNI 173
+ EA L + MI R + P+T TY +L+DGF SKGC ++ ++NI
Sbjct: 349 LREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNI 408
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINN 215
LINGYCK ++D + L R+M G+ AD TYNTL M
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 216 VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAW 275
VPP+ Y +DGL NG +A+++F I K L I N +I G+C ++ AW
Sbjct: 469 VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 528
Query: 276 DIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D+F L G+ P V TYNIMI G CK+G +A L MEE G P+
Sbjct: 529 DLFCSLPLK-GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 155/355 (43%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N+ T + +I C ++ A K+ +PN ITF+TL AL L
Sbjct: 122 NLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
+ MV E G KPD++T +++GLC G M++ G +P+ VT + + +
Sbjct: 182 DRMV-EMG--HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 238
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDV 168
K G+ A LL M +R++ + Y+ ++DG KG ++
Sbjct: 239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YNILI G+C +D L R+M+ I + T++ L
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + PD+ YT+ IDG K + +A ++ + + C I T N LI+G CK R
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ ++F M G+ D VTYN +I GFC+ G+ A L +M + PN
Sbjct: 419 IDDGLELFRK-MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 472
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 122/305 (40%), Gaps = 70/305 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL ++ PN+VTF+ LI EG++ EA L K++ P+ IT+
Sbjct: 312 GRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITY 371
Query: 62 NTLA--------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+L L N +++ G C P++ T +I+G CK DG M
Sbjct: 372 TSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+G+ D VT N + + GK+ A L + M+ R V PN TY L+DG
Sbjct: 430 SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 158 -------------------------------------AW------WSKGCRHDVYSYNIL 174
AW KG + V +YNI+
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNG 234
I G CK + +A L R+M +G D TYN L A + D+ I+ L + G
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA-HLGDGDATKSVKLIEELKRCG 608
Query: 235 FVLEA 239
F ++A
Sbjct: 609 FSVDA 613
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 103/268 (38%), Gaps = 68/268 (25%)
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYS 170
D K ++A L MI P ++ L A KG H++Y+
Sbjct: 66 DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYT 125
Query: 171 YNILINGYCKDRN-----------------------------------VEDAVSLCREML 195
+I+IN +C+ R V +A+ L M+
Sbjct: 126 LSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 196 SEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVL 237
G + D T NTL M P++ Y ++ + K+G
Sbjct: 186 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTA 245
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
AM++ + L + +IDGLCK G L A+++F+ M+ G+T +++TYNI+
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNE-MEMKGITTNIITYNIL 304
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I GFC G+ LL DM + + PN
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 25/177 (14%)
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYT----T 225
SY + D +DA+ L R+M+ ++ LF AI V
Sbjct: 55 SYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM 114
Query: 226 YIDGLYKNGFVLEAM-----------KVFSAIGN------HKCVLTIETCNCLIDGLCKI 268
+ G+ N + L M FSA+G +T T LI+GLC
Sbjct: 115 ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFST---LINGLCLE 171
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
GR+ A ++ +++ G PD++T N +++G C G+ +A L+ M E G +PN
Sbjct: 172 GRVSEALELVDRMVE-MGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPN 227
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + P++VT+NS++ G+C G A L +K+ +V T+
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTY 231
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
+T+ A++LF+EM + G+ K VVT +++ GLCK G
Sbjct: 232 STIIDSLCRDGCIDAAISLFKEMETK-GI--KSSVVTYNSLVRGLCKAGKWNDGALLLKD 288
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M+ + + P+V+T NV+ D K+GK++EAN L + MI R ++PN TYNTLMDG+ ++
Sbjct: 289 MVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348
Query: 163 --------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
C D+ ++ LI GYC + V+D + + R + G+ A+A TY+
Sbjct: 349 LSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSI 408
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG + +A+++F + K
Sbjct: 409 LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 468
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I +I+G+CK G+++ AW++F L G+ P+V+TY +MI G CK+G +A
Sbjct: 469 MDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL-PCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 311 NGLLLDMEETGLEPN 325
N LL MEE G PN
Sbjct: 528 NILLRKMEEDGNAPN 542
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 134/287 (46%), Gaps = 55/287 (19%)
Query: 68 ALNLFEEMVNE------------FGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTL 115
A+ LF+EM+ F I + N++ CK + G+ ++ TL
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQF---NLVLDFCKQ--LELNGIAHNIYTL 126
Query: 116 NVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------- 162
N+M + + K A +L +++ P+T T+NTL+ G K
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186
Query: 163 -GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
GC+ DV +YN ++NG C+ + A+ L R+M ++AD TY+T+
Sbjct: 187 NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI------------ 234
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
ID L ++G + A+ +F + ++ T N L+ GLCK G+ W+ +L
Sbjct: 235 -----IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK----WNDGALL 285
Query: 282 MQN---PGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+++ + P+V+T+N+++ F KEG+ Q+AN L +M G+ PN
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 65/276 (23%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ + G +LL ++ PN++TFN L+ EG++ EA L+K++ PN+IT+
Sbjct: 277 GKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITY 336
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLC-----KDGF-------- 102
NTL N E N ++ C PD+VT T++I G C DG
Sbjct: 337 NTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK 396
Query: 103 --------------------------------MMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
M+ G+ PDV+T ++ D L +GK+E+
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW------WSKGCRHDVYSYNILIN 176
A + E + + ++ Y T+++G AW KG + +V +Y ++I+
Sbjct: 457 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
G CK ++ +A L R+M +G + TYNTL A
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 47/224 (20%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G + I N VT++ L++G C G+I A LF+++ P+V+T+
Sbjct: 383 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYG 442
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPD--VVTCTNIIDGLCKDGFMMD------ 105
L AL +FE++ K D +V T II+G+CK G + D
Sbjct: 443 ILLDGLCDNGKLEKALEIFEDLQKS-----KMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497
Query: 106 ----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+G++P+V+T VM L K G + EAN LL M + PN CTYNT
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNT--------- 548
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + +D ++ + L EM S G ADA++
Sbjct: 549 ------------LIRAHLRDGDLTASAKLIEEMKSCGFSADASS 580
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 194/374 (51%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ +++ P++VT+ +++ GLC G I A L KK+ + +V+ +N
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 262
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ G+ +PDV T +++I LC G M
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNK-GI--RPDVFTYSSLISCLCNYGRWSDASRLLSDM 319
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P+VVT + + D K+GK+ EA L + MI+R ++P+ TY++L++GF
Sbjct: 320 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 379
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SK C +V +Y+ LI G+CK + VE+ + L REM G+ + TY TL
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M V P+ Y +DGL KNG + +AM VF +
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
I T N +I+G+CK G+++ W++F L G++P+V+ YN MI GFC++G ++A+
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK-GVSPNVIAYNTMISGFCRKGSKEEAD 558
Query: 312 GLLLDMEETGLEPN 325
LL M+E G PN
Sbjct: 559 SLLKKMKEDGPLPN 572
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 71/279 (25%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI EG+++EA +L+ ++ DP++ T+
Sbjct: 307 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------- 99
++L A ++FE M+++ C P+VVT + +I G CK
Sbjct: 367 SSLINGFCMHDRLDEAKHMFELMISK---DCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423
Query: 100 -----------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGK 127
GF M+ G+ P+++T N++ D L K+GK
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483
Query: 128 MEEANCLLEVMIQRDVNPNTCTYNTLMDGFA-------WWS-------KGCRHDVYSYNI 173
+ +A + E + + + P+ TYN +++G W KG +V +YN
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNT 543
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
+I+G+C+ + E+A SL ++M +G ++ TYNTL A
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 120/252 (47%), Gaps = 45/252 (17%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV------ 67
I CF PN+VT+++LIKG C R+ E LF++++ N +T+ TL
Sbjct: 390 ISKDCF-PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448
Query: 68 ---ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVT 114
A +F++MV+ V P+++T ++DGLCK+G ++ M PD+ T
Sbjct: 449 CDNAQMVFKQMVS---VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYS---- 170
N+M + + K GK+E+ L + + V+PN YNT++ GF KG + + S
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC--RKGSKEEADSLLKK 563
Query: 171 ------------YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPP 218
YN LI +D + E + L +EM S G DA+T + N+
Sbjct: 564 MKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGL----VTNMLH 619
Query: 219 DSHVYTTYIDGL 230
D + +++D L
Sbjct: 620 DGRLDKSFLDML 631
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 36/272 (13%)
Query: 86 DVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
D++ + +D G M+ P +V N + ++K K E L E M ++
Sbjct: 60 DIIKVDDAVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISH 116
Query: 146 NTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAVSLC 191
+ TY+ ++ F S+ G D+ + + L+NGYC + + DAV+L
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 192 REMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKN 233
+M+ G + D T+ TL M PD Y T ++GL K
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKR 236
Query: 234 GFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
G + A+ + + K + N +IDGLCK + A ++F M N G+ PDV T
Sbjct: 237 GDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE-MDNKGIRPDVFT 295
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y+ +I C G+ A+ LL DM E + PN
Sbjct: 296 YSSLISCLCNYGRWSDASRLLSDMIERKINPN 327
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 183/363 (50%), Gaps = 52/363 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
++G+++ + P++VT +SLI G C R+ +A L K+ P+V+ +NT+
Sbjct: 126 VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 185
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-------FMMDQGMR---P 110
LV A+ LF+ M + GV + D VT +++ GLC G M D MR P
Sbjct: 186 KIGLVNDAVELFDRMERD-GV--RADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---------- 160
+V+T + D K+GK EA L E M +R V+P+ TYN+L++G
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 161 ----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +YN LING+CK + V++ L REM G+ D TYNT+
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 362
Query: 217 ---------------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
P+ Y+ + GL N V +A+ +F + + L I T N +
Sbjct: 363 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 422
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CKIG ++ AWD+F L GL PDVV+Y MI GFC++ Q K++ L M+E G
Sbjct: 423 IHGMCKIGNVEDAWDLFRSL-SCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDG 481
Query: 322 LEP 324
L P
Sbjct: 482 LLP 484
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 116/252 (46%), Gaps = 42/252 (16%)
Query: 90 CTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCT 149
C+ + L G MM G PDVVT++ + + + ++ +A L+ M + P+
Sbjct: 117 CSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI 176
Query: 150 YNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
YNT++D G CK V DAV L M +G+RADA TYN+L
Sbjct: 177 YNTIID---------------------GSCKIGLVNDAVELFDRMERDGVRADAVTYNSL 215
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + ++ P+ +T ID K G EAMK++ + +C
Sbjct: 216 VAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM-TRRC 274
Query: 252 V-LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V + T N LI+GLC GR+ A + LM G PDVVTYN +I+GFCK + +
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLD-LMVTKGCLPDVVTYNTLINGFCKSKRVDEG 333
Query: 311 NGLLLDMEETGL 322
L +M + GL
Sbjct: 334 TKLFREMAQRGL 345
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + C P++ T+NSLI GLC GR+ EA ++ + C P+V+T+
Sbjct: 258 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 317
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
NTL +N F CK V +G M +G+ D +T N +
Sbjct: 318 NTL-----------INGF---CKSKRVD-----EGTKLFREMAQRGLVGDTITYNTIIQG 358
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--WWSKGC------------RHD 167
+ G+ + A E+ + D PN TY+ L+ G W + D
Sbjct: 359 YFQAGRPDAAQ---EIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YNI+I+G CK NVEDA L R + +G++ D +Y T+
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 457
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 19/176 (10%)
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------MAINNV- 216
+ ++ +++ K +N + +SL M GI D +YN + +A++ V
Sbjct: 69 IVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVG 128
Query: 217 -------PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD ++ I+G + V +A+ + S + + N +IDG CKIG
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A ++F M+ G+ D VTYN ++ G C G+ A L+ DM + PN
Sbjct: 189 LVNDAVELFDR-MERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPN 243
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 178/364 (48%), Gaps = 49/364 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LG+++ F P++VTF SL+ G C RI +A LF ++ PNV+T+ TL
Sbjct: 140 FLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLC 199
Query: 68 ---ALNLFEEMVNEFGVI-CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
LN E+ N+ G +P+VVT ++ GLC+ G MM + + P+V+
Sbjct: 200 KNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 259
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW------------- 160
T + D K GK+ EA L VMIQ V P+ TY +L++G +
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Query: 161 -SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------- 210
GC + Y LI+G+CK + VED + + EM +G+ A+ TY L
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRP 379
Query: 211 ---------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
M+ PPD Y +DGL NG V +A+ +F + + + I T +
Sbjct: 380 DVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTII 439
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
I G+CK+G+++ A+D+F L G+ P+V+TY MI GFC+ G +A+ L M+E G
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSK-GMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDG 498
Query: 322 LEPN 325
PN
Sbjct: 499 FLPN 502
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLN 116
V ++LFE+M G+ P + TC ++ +C G MM G PD+VT
Sbjct: 101 VVISLFEQM-QILGI--PPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFT 157
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
+ + ++E+A L + ++ PN TY T LI
Sbjct: 158 SLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTT---------------------LIR 196
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
CK+R++ AV L +M + G R + TYN L M + P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
+ +T ID K G ++EA ++++ + + T LI+GLC G L A +F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 279 HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ LM+ G P+ V Y +IHGFCK + + + +M + G+ N
Sbjct: 317 Y-LMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 37/227 (16%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------- 64
I MS + P++ T+ SLI GLC G + EA ++F + C PN + + TL
Sbjct: 285 IQMSVY-PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKR 343
Query: 65 ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
+ +F EM + GV+ + +T T +I G C G M + PD+ T
Sbjct: 344 VEDGMKIFYEMSQK-GVVA--NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRT 400
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWW 160
NV+ D L +GK+E+A + E M +R+++ N TY ++ G + +
Sbjct: 401 YNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLF 460
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKG + +V +Y +I+G+C+ + +A SL ++M +G + + Y
Sbjct: 461 SKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 47/276 (17%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL ++ PN++TF +LI G+++EA L+ + P+V T
Sbjct: 236 IGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFT 295
Query: 61 FNTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MM 104
+ +L L L +E F ++ C P+ V T +I G CK DG M
Sbjct: 296 YGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------- 156
+G+ + +T V+ G+ + A + M R P+ TYN L+DG
Sbjct: 356 QKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVE 415
Query: 157 -----FAWWSKGCRH-DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
F + K ++ +Y I+I G CK VEDA L + S+G++ + T
Sbjct: 416 KALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT----- 470
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I G + G + EA +F +
Sbjct: 471 ------------YTTMISGFCRRGLIHEADSLFKKM 494
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 33/248 (13%)
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--- 166
P ++ + ++K + + L E M + P CT N +M S+ CR
Sbjct: 81 PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140
Query: 167 -----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----- 210
D+ ++ L+NGYC +EDA++L ++L G + + TY TL
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200
Query: 211 -------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIET 257
M N P+ Y + GL + G +A + + + + T
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260
Query: 258 CNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
LID K+G+L A +++++++Q + PDV TY +I+G C G +A + M
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQM-SVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Query: 318 EETGLEPN 325
E G PN
Sbjct: 320 ERNGCYPN 327
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 181/376 (48%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S VL+ R++ + F PN VT+ ++ +C G+ A L +K+ + + +
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 62 NTLALV---------ALNLFEEM-VNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ + A NLF EM + F K D++T +I G C G
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGF----KADIITYNTLIGGFCNAGRWDDGAKLLR 322
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+ + + P+VVT +V+ D+ K+GK+ EA+ LL+ M+QR + PNT TYN+L+DGF
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
SKGC D+ ++NILINGYCK ++D + L REM G+ A+ TYN
Sbjct: 383 RLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442
Query: 208 TLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M V PD Y +DGL NG + +A+++F I
Sbjct: 443 TLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKS 502
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
K L I +I G+C ++ AWD+F L G+ D YNIMI C++ K
Sbjct: 503 KMELDIGIYMIIIHGMCNASKVDDAWDLFCSL-PLKGVKLDARAYNIMISELCRKDSLSK 561
Query: 310 ANGLLLDMEETGLEPN 325
A+ L M E G P+
Sbjct: 562 ADILFRKMTEEGHAPD 577
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 124/299 (41%), Gaps = 66/299 (22%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR G LL ++ +PN+VTF+ LI EG++ EA +L K++ PN IT+
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGF-----MMD 105
N+L N EE + ++ C PD++T +I+G CK DG M
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL 431
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G+ + VT N + + GK+E A L + M+ R V P+ +Y L+DG
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491
Query: 158 -----------------------------------AW------WSKGCRHDVYSYNILIN 176
AW KG + D +YNI+I+
Sbjct: 492 ALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS 551
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGF 235
C+ ++ A L R+M EG D TYN L A + D+ I+ + +GF
Sbjct: 552 ELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA-HLGDDDATTAAELIEEMKSSGF 609
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 72/338 (21%)
Query: 51 VFCCDPNVITFNTLALV----------------ALNLFEEMVNE------------FGVI 82
+FCC+ TF+ L A++LF +M+ F I
Sbjct: 39 LFCCERGFSTFSDRNLSYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAI 98
Query: 83 CKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD 142
K ++ LCK M +G+ + TL++M + + K+ A + +++
Sbjct: 99 AKTKQY---ELVLALCKQ--MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLG 153
Query: 143 VNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVEDAV 188
P+T +NTL++G + G + + + N L+NG C + V DAV
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 213
Query: 189 SLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGL 230
L M+ G + + TY + M N+ D+ Y+ IDGL
Sbjct: 214 VLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQN---PGL 287
K+G + A +F+ + I T N LI G C GR WD L+++ +
Sbjct: 274 CKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR----WDDGAKLLRDMIKRKI 329
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+P+VVT++++I F KEG+ ++A+ LL +M + G+ PN
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 109/272 (40%), Gaps = 71/272 (26%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN +T+NSLI G C E R+ EA ++ + CDP+++TF
Sbjct: 347 GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N L L LF EM + GVI + VT ++ G C+ G
Sbjct: 407 NILINGYCKANRIDDGLELFREM-SLRGVIA--NTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
M+ + +RPD+V+ ++ D L +G++E+A + + + + + Y ++ G
Sbjct: 464 MVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
Query: 158 ---AW---------------------WSKGCRHDVYS--------------------YNI 173
AW S+ CR D S YNI
Sbjct: 524 VDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNI 583
Query: 174 LINGYCKDRNVEDAVSLCREMLSEGIRADATT 205
LI + D + A L EM S G AD +T
Sbjct: 584 LIRAHLGDDDATTAAELIEEMKSSGFPADVST 615
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/375 (32%), Positives = 186/375 (49%), Gaps = 56/375 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L+ +++ + P+ VTF +L+ GL + EA L +++ V C P+++T+
Sbjct: 160 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 219
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+ +ALNL +M E G I + DVV IIDGLCK D F M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKM--EKGKI-EADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+G++PDV T N + L G+ +A+ LL M+++++NP+ +N L+D F
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL 336
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SK C DV +YN LI G+CK + VE+ + + REM G+ + TY T
Sbjct: 337 VEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M + V PD Y +DGL NG V A+ VF +
Sbjct: 397 LIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L I T +I+ LCK G+++ WD+F L G+ P+VVTY M+ GFC++G ++A
Sbjct: 457 MKLDIVTYTTMIEALCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEEA 515
Query: 311 NGLLLDMEETGLEPN 325
+ L ++M+E G PN
Sbjct: 516 DALFVEMKEDGPLPN 530
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 37/245 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVIT 60
GR S LL +L P++V FN+LI EG+++EA +L+ ++ C P+V+
Sbjct: 299 GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGL-----CKDG----- 101
+NTL + +F EM ++ G++ + VT T +I G C +
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREM-SQRGLV--GNTVTYTTLIHGFFQARDCDNAQMVFK 415
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ G+ PD++T N++ D L +G +E A + E M +RD+ + TY T+++
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAG 475
Query: 159 ----WWS-------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
W KG + +V +Y +++G+C+ E+A +L EM +G ++ TYN
Sbjct: 476 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYN 535
Query: 208 TLFMA 212
TL A
Sbjct: 536 TLIRA 540
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 53/286 (18%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGF---------MMDQGMRPDVVTLNV 117
A+ LF +MV P +V + ++ + K + F M + G+ ++ T ++
Sbjct: 59 AIGLFGDMVKSRPF---PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + ++ A +L M++ P+ T N+L+ NG
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLL---------------------NG 154
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPD 219
+C + +AV+L +M+ G + D T+ TL M + PD
Sbjct: 155 FCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPD 214
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
Y I+GL K G A+ + + + K + N +IDGLCK + A+D+F+
Sbjct: 215 LVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFN 274
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G+ PDV TYN +I C G+ A+ LL DM E + P+
Sbjct: 275 K-METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPD 319
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 107/267 (40%), Gaps = 83/267 (31%)
Query: 18 CFTPNMVTFNSLIKGLCTEGRILEAARLFKKLN--------------------VFCCD-- 55
CF P++V +N+LIKG C R+ E +F++++ CD
Sbjct: 352 CF-PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 410
Query: 56 -------------PNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNI 93
P+++T+N L AL +FE M K D+VT T +
Sbjct: 411 QMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR---DMKLDIVTYTTM 467
Query: 94 IDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDV 143
I+ LCK G + D +G++P+VVT M + G EEA+ L M +
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGP 527
Query: 144 NPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
PN+ TYNT LI +D + + L +EM S G DA
Sbjct: 528 LPNSGTYNT---------------------LIRARLRDGDEAASAELIKEMRSCGFAGDA 566
Query: 204 TTYNTLFMAINNVPPDSHVYTTYIDGL 230
+T F + N+ D + +++D L
Sbjct: 567 ST----FGLVTNMLHDGRLDKSFLDML 589
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 181/374 (48%), Gaps = 55/374 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+ S +LG++L + P+ VT SL+ G C R+ +A L K+ P+++ +N
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
+ A + F+E + G+ +P+VVT T +++GLC M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKE-IERKGI--RPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+ + + P+V+T + + D K+GK+ EA L E M++ ++P+ TY++L++G
Sbjct: 252 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC DV SYN LING+CK + VED + L REM G+ ++ TYNTL
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
M + PD Y + GL NG + +A+ +F + +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK G+++ AW +F L GL PD+VTY M+ G C +G +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490
Query: 312 GLLLDMEETGLEPN 325
L M++ GL N
Sbjct: 491 ALYTKMKQEGLMKN 504
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 46/300 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVVTLNV 117
A++LF +MV P +V ++ + K M G+R D+ T N+
Sbjct: 69 AIDLFSDMVKSRPF---PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------G 163
+ + ++ A +L M++ P+ T +L++GF ++ G
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------- 210
+ D+ +YN +I+ CK + V DA +E+ +GIR + TY L
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245
Query: 211 -----MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
M + P+ Y+ +D KNG VLEA ++F + I T + LI+GL
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
C R+ A +F LM + G DVV+YN +I+GFCK + + L +M + GL N
Sbjct: 306 CLHDRIDEANQMFD-LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 65/263 (24%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LL ++ TPN++T+++L+ G++LEA LF+++ DP+++T+
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCK-----DGFM----MDQ 106
++L L + +E F ++ C DVV+ +I+G CK DG M Q
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358
Query: 107 ------------------------------------GMRPDVVTLNVMTDNLSKDGKMEE 130
G+ PD+ T N++ L +G++E+
Sbjct: 359 RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEK 418
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGF-------AWWS-------KGCRHDVYSYNILIN 176
A + E M +R+++ + TY T++ G WS KG + D+ +Y +++
Sbjct: 419 ALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMS 478
Query: 177 GYCKDRNVEDAVSLCREMLSEGI 199
G C + + +L +M EG+
Sbjct: 479 GLCTKGLLHEVEALYTKMKQEGL 501
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+D K+ +A L M++ P+ +N L+ K G R+D+Y
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLY 121
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++NI+IN +C V A+S+ +ML G D T +L ++G
Sbjct: 122 TFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSL-----------------VNG 164
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+ V +A+ + + I N +ID LCK R+ A+D F + + G+ P
Sbjct: 165 FCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI-ERKGIRP 223
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+VVTY +++G C + A LL DM + + PN
Sbjct: 224 NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPN 259
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R G L + N VT+N+LI+G G + +A F +++ F P++ T+N
Sbjct: 345 RVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 63 TLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD-------- 105
L AL +FE+M + D+VT T +I G+CK G + +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDL---DIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 106 --QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
+G++PD+VT M L G + E L M Q + N C TL DG
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDC---TLSDG 511
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 180/372 (48%), Gaps = 55/372 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S +LG+++ + P++VTF SL+ G C RI +A L + +PNV+ +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NTL +AL L EM + G+ DVVT ++ GLC G
Sbjct: 180 NTLIDGLCKNGELNIALELLNEMEKK-GL--GADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
MM + + PDVVT + D K G ++EA L + MIQ V+PN TYN++++G
Sbjct: 237 MMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR 296
Query: 161 ------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKGC +V +YN LI+G+CK R V++ + L + M EG AD TYNT
Sbjct: 297 LYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356
Query: 209 L------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L +M V PD + + GL NG + A+ F + +
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESE 416
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ I N +I GLCK +++ AW++F L G+ PD TY IMI G CK G ++A
Sbjct: 417 KYIGIVAYNIMIHGLCKADKVEKAWELFCRL-PVEGVKPDARTYTIMILGLCKNGPRREA 475
Query: 311 NGLLLDMEETGL 322
+ L+ M+E G+
Sbjct: 476 DELIRRMKEEGI 487
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 138/355 (38%), Gaps = 52/355 (14%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R F L ++ S P++V F L+ R +K+ ++ ++ +F
Sbjct: 51 RFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFT 110
Query: 63 TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNL 122
L C+ C+ + L G MM G P +VT +
Sbjct: 111 IL--------------IHCFCR-----CSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
++ +A L+ +M++ PN YNTL+DG KG DV
Sbjct: 152 CLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADV 211
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN L+ G C DA + R+M+ I D T+ L
Sbjct: 212 VTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKE 271
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M ++V P++ Y + I+GL +G + +A K F + + C + T N LI G CK
Sbjct: 272 MIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRM 331
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F M G D+ TYN +IHG+C+ G+ + A + M + P+
Sbjct: 332 VDEGMKLFQR-MSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 175/367 (47%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LG+++ P++VTF SL+ G C R+ +A +F ++ PNV+ +NT+
Sbjct: 138 FLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLC 197
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL+L M + G+ PDVVT ++I GLC G M + + P
Sbjct: 198 KSKQVDNALDLLNRMEKD-GI--GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYP 254
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------- 161
DV T N + D K+G++ EA E MI+R ++P+ TY+ L+ G +S
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314
Query: 162 -----KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KGC DV +Y+ILINGYCK + VE + L EM G+ + TY L
Sbjct: 315 GFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRA 374
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M V P+ Y + GL NG + +A+ + + + + I T
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTY 434
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +I G+CK G + AWDI+ L GL PD+ TY M+ G K+G ++A+ L M+
Sbjct: 435 NIIIRGMCKAGEVADAWDIYCSL-NCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMK 493
Query: 319 ETGLEPN 325
E G+ PN
Sbjct: 494 EDGILPN 500
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 146/372 (39%), Gaps = 87/372 (23%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFG 80
P++ F+ L+ + + L++++ + N+ T N L LN F
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNIL----LNCF-------- 126
Query: 81 VICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ 140
C+ C+ + L G M+ G P +VT + + + ++ +A + + M+
Sbjct: 127 --CR-----CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 141 RDVNPNTCTYNTLMDGF--------------------------------------AWWSK 162
PN YNT++DG WS
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 163 GCRH-----------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-- 209
R DV+++N LI+ K+ V +A EM+ + D TY+ L
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 210 ----------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
FM PD Y+ I+G K+ V MK+F + V
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T LI G C+ G+L +A +IF M G+ P+++TYN+++HG C G+ +KA +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRR-MVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 314 LLDMEETGLEPN 325
L DM++ G++ +
Sbjct: 419 LADMQKNGMDAD 430
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFC-CDPNVITFNTL--ALVALNLFEEMVNE 78
N VT+ LI+G C G++ A +F+++ VFC PN+IT+N L L E+ +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRM-VFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDNLSK 124
+ K D+VT II G+CK G + D QG+ PD+ T M L K
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYK 478
Query: 125 DGKMEEANCLLEVMIQRDVNPNTC 148
G EA+ L M + + PN C
Sbjct: 479 KGLRREADALFRKMKEDGILPNEC 502
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 49/194 (25%)
Query: 175 INGYCKDRNVEDAVSLCREMLSEGIRADA--TTYNTLFMAINNVP-PDSHVYTTYIDGLY 231
I G+C R S REML GIR + + F + P P ++ + +
Sbjct: 33 ICGFCFSRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAIS 92
Query: 232 KNG------FVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA----------- 274
K ++ E M++ I ++ C TCN L++ C+ +L +A
Sbjct: 93 KMKKYDVVIYLWEQMQML-GIPHNLC-----TCNILLNCFCRCSQLSLALSFLGKMIKLG 146
Query: 275 ---------------------WDIFHMLMQNPGL--TPDVVTYNIMIHGFCKEGQHQKAN 311
+D +M Q G+ P+VV YN +I G CK Q A
Sbjct: 147 HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206
Query: 312 GLLLDMEETGLEPN 325
LL ME+ G+ P+
Sbjct: 207 DLLNRMEKDGIGPD 220
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 56/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
R S LG+++ F P++VTF SL+ G C R EA L ++ +PNV+ +
Sbjct: 128 ARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIY 187
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
NT+ AL++ + M + G+ +PDVVT ++I L G
Sbjct: 188 NTIIDSLCEKGQVNTALDVLKHM-KKMGI--RPDVVTYNSLITRLFHSGTWGVSARILSD 244
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF----- 157
MM G+ PDV+T + + D K+G++ EA MIQR VNPN TYN+L++G
Sbjct: 245 MMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGL 304
Query: 158 ---------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
SKG + +YN LINGYCK + V+D + + M +G+ D TYNT
Sbjct: 305 LDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNT 364
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L+ M V PD + + +DGL +G + +A+ + K
Sbjct: 365 LYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSK 424
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
V+ I T N +I GLCK +++ AW +F L G++PDV+TY M+ G ++ ++A
Sbjct: 425 TVVGIITYNIIIKGLCKADKVEDAWYLFCSLALK-GVSPDVITYITMMIGLRRKRLWREA 483
Query: 311 NGLLLDME-ETGLEP 324
+ L M+ E GL P
Sbjct: 484 HELYRKMQKEDGLMP 498
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 179/389 (46%), Gaps = 86/389 (22%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVAL 69
TP ++TFN+LI GLC EGR+LEAA L K+ +V+T+ T+ AL
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
NL +M KPDVV + IID LCKDG M+++G+ P+V T N M
Sbjct: 282 NLLSKMEETH---IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMI 338
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK----------------- 162
D G+ +A LL MI+R++NP+ T+N L+ K
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398
Query: 163 ------------GCRH----------------DVYSYNILINGYCKDRNVEDAVSLCREM 194
C+H DV ++N +I+ YC+ + V++ + L RE+
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 195 LSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFV 236
G+ A+ TTYNTL M + V PD+ + G +N +
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 237 LEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNI 296
EA+++F I K L N +I G+CK ++ AWD+F L + G+ PDV TYN+
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIH-GVEPDVQTYNV 577
Query: 297 MIHGFCKEGQHQKANGLLLDMEETGLEPN 325
MI GFC + AN L M++ G EP+
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 113/362 (31%), Positives = 164/362 (45%), Gaps = 66/362 (18%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRI---------------LEAARLFKKLNVFCCD 55
G++ F P++VTFN+L+ GLC E RI LEA LF ++
Sbjct: 164 FGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLT 223
Query: 56 PNVITFNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----- 101
P VITFNTL L A L +MV G DVVT I++G+CK G
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMV---GKGLHIDVVTYGTIVNGMCKMGDTKSA 280
Query: 102 -----FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG 156
M + ++PDVV + + D L KDG +A L M+++ + PN TYN ++DG
Sbjct: 281 LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDG 340
Query: 157 ---FAWWSKGCR-----------HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRAD 202
F WS R DV ++N LI+ K+ + +A LC EML I D
Sbjct: 341 FCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400
Query: 203 ATTYNTLFMAINN--------------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
TYN++ PD + T ID + V E M++ I
Sbjct: 401 TVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
V T N LI G C++ L A D+F ++ + G+ PD +T NI+++GFC+ + +
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISH-GVCPDTITCNILLYGFCENEKLE 519
Query: 309 KA 310
+A
Sbjct: 520 EA 521
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 43/284 (15%)
Query: 42 AARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG 101
A L++K+ + N+ +FN L + C D C + L G
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNIL----------------IKCFCD---CHKLSFSLSTFG 165
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
+ G +PDVVT N + L + ++ EA L M++ ++ +++
Sbjct: 166 KLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE------ 219
Query: 162 KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSH 221
G V ++N LING C + V +A +L +M+ +G+ D TY T+
Sbjct: 220 IGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTI------------ 267
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
++G+ K G A+ + S + + + +ID LCK G A +F +
Sbjct: 268 -----VNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEM 322
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ G+ P+V TYN MI GFC G+ A LL DM E + P+
Sbjct: 323 LEK-GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD 365
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L I MS + V +N +I G+C ++ EA LF L + +P+V T+N
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNV------ 577
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
M++ F C ++ N++ M D G PD T N + K G+++
Sbjct: 578 -----MISGF---CGKSAISDANVLFHK-----MKDNGHEPDNSTYNTLIRGCLKAGEID 624
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMD 155
++ L+ M + + T + D
Sbjct: 625 KSIELISEMRSNGFSGDAFTIKMVAD 650
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/363 (31%), Positives = 172/363 (47%), Gaps = 51/363 (14%)
Query: 12 GRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNL 71
G+++ F P++VT SL+ G C R EA L ++ F PNV+ +NT+ + L
Sbjct: 138 GKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTV-INGLCK 196
Query: 72 FEEMVNEFGVI-------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVT 114
++ N V + D VT +I GL G M+ + + P+V+
Sbjct: 197 NRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIF 256
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-------------- 160
+ D K+G + EA L + MI+R V PN TYN+L++GF
Sbjct: 257 FTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMV 316
Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------- 210
SKGC DV +YN LI G+CK + VED + L EM +G+ DA TYNTL
Sbjct: 317 SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN 376
Query: 211 --------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLI 262
M V PD Y +D L NG + +A+ + + + + I T N +I
Sbjct: 377 VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIII 436
Query: 263 DGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
GLC+ +LK AW +F L + G+ PD + Y MI G C++G ++A+ L M+E G
Sbjct: 437 QGLCRTDKLKEAWCLFRSLTRK-GVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGF 495
Query: 323 EPN 325
P+
Sbjct: 496 MPS 498
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 36/231 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
L ++ PN+ T+NSLI G C G + +A +F + C P+V+T+NTL
Sbjct: 276 LYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFC 335
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
+ LF EM + G++ D T +I G C+ G M+D G+ P
Sbjct: 336 KSKRVEDGMKLFCEMTYQ-GLV--GDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSP 392
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------AW--- 159
D+VT N++ D L +GK+E+A ++E + + +++ + TYN ++ G AW
Sbjct: 393 DIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLF 452
Query: 160 ---WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
KG + D +Y +I+G C+ +A LCR M +G Y+
Sbjct: 453 RSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 503
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 119/274 (43%), Gaps = 53/274 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR + LL ++ PN++ F +LI EG +LEA L+K++ PNV T+
Sbjct: 233 GRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTY 292
Query: 62 NTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF----- 102
N+L A +F+ MV++ C PDVVT +I G CK DG
Sbjct: 293 NSLINGFCIHGCLGDAKYMFDLMVSKG---CFPDVVTYNTLITGFCKSKRVEDGMKLFCE 349
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK 162
M QG+ D T N + + GK+ A + M+ V+P+ TYN L+D K
Sbjct: 350 MTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 163 GCRH--------------DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ D+ +YNI+I G C+ +++A L R + +G++
Sbjct: 410 IEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVK-------- 461
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
PD+ Y T I GL + G EA K+
Sbjct: 462 ---------PDAIAYITMISGLCRKGLQREADKL 486
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
+A +F + + + +I ++ + K+ + I ++H M+N G++ D+ ++ I+
Sbjct: 62 DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHK-MENLGISHDLYSFTIL 120
Query: 298 IHGFCK 303
IH FC+
Sbjct: 121 IHCFCR 126
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 174/349 (49%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
LG+++ F P++VTF SLI G C R+ EA + ++ P+V+ + T+
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLC 188
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
AL+LF++M N +G+ +PDVV T++++GLC G M + ++P
Sbjct: 189 KNGHVNYALSLFDQMEN-YGI--RPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKP 245
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
DV+T N + D K+GK +A L MI+ + PN TY +L++GF
Sbjct: 246 DVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
+KGC DV +Y LING+CK + V+DA+ + EM +G+ + TY TL
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL------- 358
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I G + G A +VFS + + I T N L+ LC G++K A
Sbjct: 359 ----------IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALM 408
Query: 277 IFHMLMQNP--GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
IF + + G+ P++ TYN+++HG C G+ +KA + DM + ++
Sbjct: 409 IFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 138 MIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
M + DV N C + +M G HD+Y+ N+L+N +C+ A S +M+
Sbjct: 85 MKKFDVVINLCDHLQIM--------GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKL 136
Query: 198 GIRADATTYNTLF------------MAINN------VPPDSHVYTTYIDGLYKNGFVLEA 239
G D T+ +L M++ N + PD +YTT ID L KNG V A
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ +F + N+ + L++GLC GR + A D M + PDV+T+N +I
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDA-DSLLRGMTKRKIKPDVITFNALID 255
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
F KEG+ A L +M + PN
Sbjct: 256 AFVKEGKFLDAEELYNEMIRMSIAPN 281
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 123/273 (45%), Gaps = 56/273 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L ++ PN+ T+ SLI G C EG + EA ++F + C P+V+ + +L
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFC 328
Query: 65 ----ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
A+ +F EM + G+ + +T T +I G + G M+ +G+ P
Sbjct: 329 KCKKVDDAMKIFYEMSQK-GLT--GNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP 385
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRD---VNPNTCTYNTLMDGFAWWSKGCR-- 165
++ T NV+ L +GK+++A + E M +R+ V PN TYN L+ G + K +
Sbjct: 386 NIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKAL 445
Query: 166 ---HDVYSYNI---------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
D+ + +I G CK V++AV+L + S+G++ + T
Sbjct: 446 MVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVT-------- 497
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
YTT I GL++ G EA +F +
Sbjct: 498 ---------YTTMISGLFREGLKHEAHVLFRKM 521
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF---------------- 210
+ + L+N K + + ++LC + G+ D T N L
Sbjct: 71 SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130
Query: 211 --MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
M PD +T+ I+G + EAM + + + + +ID LCK
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A +F M+N G+ PDVV Y +++G C G+ + A+ LL M + ++P+
Sbjct: 191 GHVNYALSLFDQ-MENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPD 246
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/367 (29%), Positives = 179/367 (48%), Gaps = 58/367 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
++ R+L+ F P+ +T+ L+ GLC GR+ A LF ++ P ++ FNTL V
Sbjct: 309 MVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFV 364
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A + +MV +G++ PDV T ++I G K+G M ++G +P
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIV--PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKP 422
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+V + ++ D K GK++EA +L M + PNT +N L+ F
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIF 482
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
KGC+ DVY++N LI+G C+ ++ A+ L R+M+SEG+ A+ TYNTL
Sbjct: 483 REMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRR 542
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M P D Y + I GL + G V +A +F + + +C
Sbjct: 543 GEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISC 602
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LI+GLC+ G ++ A + F M G TPD+VT+N +I+G C+ G+ + + ++
Sbjct: 603 NILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ 661
Query: 319 ETGLEPN 325
G+ P+
Sbjct: 662 AEGIPPD 668
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 162/326 (49%), Gaps = 49/326 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-----ALNLFEEM 75
PN V + +LI L R+ EA +L +++ + C P+ TFN + L +N +M
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 76 VNEFGVI-CKPDVVTCTNIIDGLCKDGF------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
VN + PD +T +++GLCK G + + +P++V N + G++
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRL 369
Query: 129 EEANCLLEVMI-QRDVNPNTCTYNTLMDGFAW---------------WSKGCRHDVYSYN 172
++A +L M+ + P+ CTYN+L+ G+ W +KGC+ +VYSY
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGY-WKEGLVGLALEVLHDMRNKGCKPNVYSYT 428
Query: 173 ILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYK 232
IL++G+CK +++A ++ EM ++G++ + +N L I K
Sbjct: 429 ILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL-----------------ISAFCK 471
Query: 233 NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIA-WDIFHMLMQNPGLTPDV 291
+ EA+++F + C + T N LI GLC++ +K A W + M+ + G+ +
Sbjct: 472 EHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE--GVVANT 529
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
VTYN +I+ F + G+ ++A L+ +M
Sbjct: 530 VTYNTLINAFLRRGEIKEARKLVNEM 555
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 36/242 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ + +L + PN V FN LI C E RI EA +F+++ C P+V T
Sbjct: 437 LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
FN+L AL L +M++E GV+ + VT +I+ + G
Sbjct: 497 FNSLISGLCEVDEIKHALWLLRDMISE-GVVA--NTVTYNTLINAFLRRGEIKEARKLVN 553
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS 161
M+ QG D +T N + L + G++++A L E M++ P+ + N L++G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613
Query: 162 --------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+G D+ ++N LING C+ +ED +++ R++ +EGI D T+N
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673
Query: 208 TL 209
TL
Sbjct: 674 TL 675
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 54/356 (15%)
Query: 4 ASGGFVLLGRILMSCFTPNMV----TFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNV 58
A+G F + R+L+ +V F S+++ G + RL ++ NV+ C+P
Sbjct: 123 ANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTF 182
Query: 59 ITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
++N + E +V+ C + + D M+ + + P + T V+
Sbjct: 183 KSYNVV-------LEILVSG----------NCHKVAANVFYD--MLSRKIPPTLFTFGVV 223
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GC 164
+++ A LL M + PN+ Y TL+ + ++ GC
Sbjct: 224 MKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV-------- 216
D ++N +I G CK + +A + ML G D TY L + +
Sbjct: 284 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKD 343
Query: 217 ------PPDSHVYTTYIDGLYKNGFVLEAMKVFS-AIGNHKCVLTIETCNCLIDGLCKIG 269
P+ ++ T I G +G + +A V S + ++ V + T N LI G K G
Sbjct: 344 LFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEG 403
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +A ++ H M+N G P+V +Y I++ GFCK G+ +A +L +M GL+PN
Sbjct: 404 LVGLALEVLHD-MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPN 458
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 45/224 (20%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDP-NVITFNTLAL-- 66
LL ++ N VT+N+LI G I EA +L ++ VF P + IT+N+L
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEM-VFQGSPLDEITYNSLIKGL 574
Query: 67 -------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR 109
A +LFE+M+ + P ++C +I+GLC+ G M+ +G
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHA---PSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVY 169
PD+VT N + + L + G++E+ + + + P+T T+NTLM +W KG
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM---SWLCKG------ 682
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
G+ V DA L E + +G + T++ L +I
Sbjct: 683 -------GF-----VYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 151 NTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+T M+ F+W G RH Y +LI + + L +M EGI +
Sbjct: 92 STSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGI----VFKES 147
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCK 267
LF++I + K GF + ++ + N + C T ++ N +++ L
Sbjct: 148 LFISI-------------MRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVS 194
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K+A ++F+ ++ + P + T+ +++ FC + A LL DM + G PN
Sbjct: 195 GNCHKVAANVFYDMLSRK-IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPN 251
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 60/340 (17%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
+AS L+ R++ P++VT+ +++ GLC G A L K+ + NV+ ++
Sbjct: 198 KASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYS 257
Query: 63 TLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
T+ ALNLF EM N+ GV +P+V+T +++I LC G M
Sbjct: 258 TVIDSLCKYRHEDDALNLFTEMENK-GV--RPNVITYSSLISCLCNYGRWSDASRLLSDM 314
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
+++ + P++VT + + D K GK+ +A L E MI+R ++PN TY++L++GF
Sbjct: 315 IERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRL 374
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
K C +V +YN LING+CK + V+ + L REM G+ + TY TL
Sbjct: 375 GEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFS---AIGNHKCVLTIETCNCLIDGLC 266
I G ++ A VF ++G H +LT N L+DGLC
Sbjct: 435 -----------------IHGFFQARDCDNAQMVFKQMVSVGVHPNILTY---NILLDGLC 474
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
K G+L A +F L Q + PD+ TYNIMI G CK G+
Sbjct: 475 KNGKLAKAMVVFEYL-QRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 166/356 (46%), Gaps = 54/356 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
R S L+ +++ + P+ VTF +LI GL + EA L ++ C P+++T+
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222
Query: 63 TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----M 103
+ +ALNL +M E I + +VV + +ID LCK D M
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKM--EAAKI-EANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++G+RP+V+T + + L G+ +A+ LL MI+R +NPN T++ L+D F K
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKL 339
Query: 164 CRHD--------------VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ + +++Y+ LING+C + D + ++ML IR D
Sbjct: 340 VKAEKLYEEMIKRSIDPNIFTYSSLINGFC----MLDRLGEAKQMLELMIRKDCL----- 390
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
P+ Y T I+G K V + M++F + V T LI G +
Sbjct: 391 --------PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +F M + G+ P+++TYNI++ G CK G+ KA + ++ + +EP+
Sbjct: 443 DCDNAQMVFKQ-MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPD 497
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 160/383 (41%), Gaps = 87/383 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
L G + S P+++ F+ L+ + + +K+ + N+ T+N L +
Sbjct: 65 LFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNIL----I 120
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKME 129
N F C+ C+ + L G MM G PD+VTLN + + ++
Sbjct: 121 NCF----------CR-----CSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRIS 165
Query: 130 EANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILI 175
+A L++ M++ P+T T+ TL+ G +K GC+ D+ +Y ++
Sbjct: 166 DAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVV 225
Query: 176 NGYCKD-----------------------------------RNVEDAVSLCREMLSEGIR 200
NG CK R+ +DA++L EM ++G+R
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 285
Query: 201 ADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV 242
+ TY++L M + P+ ++ ID K G +++A K+
Sbjct: 286 PNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKL 345
Query: 243 FSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFC 302
+ + I T + LI+G C + RL A + ++++ L P+VVTYN +I+GFC
Sbjct: 346 YEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCL-PNVVTYNTLINGFC 404
Query: 303 KEGQHQKANGLLLDMEETGLEPN 325
K + K L +M + GL N
Sbjct: 405 KAKRVDKGMELFREMSQRGLVGN 427
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
GR S LL ++ PN+VTF++LI +G++++A +L++++ DPN+ T+
Sbjct: 302 GRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY 361
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGF----------MMD 105
++L L+ E ++ C P+VVT +I+G CK M
Sbjct: 362 SSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQ 421
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG--------- 156
+G+ + VT + + + A + + M+ V+PN TYN L+DG
Sbjct: 422 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAK 481
Query: 157 ----FAWWSKGCRH-DVYSYNILINGYCK 180
F + + D+Y+YNI+I G CK
Sbjct: 482 AMVVFEYLQRSTMEPDIYTYNIMIEGMCK 510
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 176/373 (47%), Gaps = 53/373 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARL-FKKLNVFCCDPNVIT 60
GR GF LG ++ F + + F L+KGLC + R +A + +++ C PNV +
Sbjct: 101 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFS 160
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+N L + AL L M ++ G PDVV+ T +I+G K+G
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M+D+G+ PDVVT N + L K M++A +L M++ V P+ TYN+++ G+
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S G DV +Y++L++ CK+ +A + M G++ + TTY
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
TL M N + PD +V++ I K G V +AM VFS +
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
T +I LCK GR++ A F ++ + GL+P + YN +IHG C + ++
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI-DEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 310 ANGLLLDMEETGL 322
A L+L+M + G+
Sbjct: 460 AEELILEMLDRGI 472
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 165/363 (45%), Gaps = 55/363 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV-- 67
LL ++ + P+ F+ LI +G++ +A +F K+ +PN +T+ + +
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417
Query: 68 -------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRP 110
A+ FE+M++E P + ++I GLC M+D+G+
Sbjct: 418 KSGRVEDAMLYFEQMIDEG---LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL 474
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK-------- 162
+ + N + D+ K+G++ E+ L E+M++ V PN TYNTL++G+ K
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 163 ------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI--- 213
G + + +Y+ LINGYCK +EDA+ L +EM S G+ D TYN + +
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 214 ---------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
+ + Y + GL KN +A+++F + L T
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTF 654
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N +ID L K+GR A D+F N GL P+ TY +M +G ++ + L L ME
Sbjct: 655 NIMIDALLKVGRNDEAKDLFVAFSSN-GLVPNYWTYRLMAENIIGQGLLEELDQLFLSME 713
Query: 319 ETG 321
+ G
Sbjct: 714 DNG 716
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 51/354 (14%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNE 78
P++V++ ++I G EG +A + ++ P+V+T+N++ AL ++ +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 79 FGVICK----PDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSK 124
+ K PD +T +I+ G C G M G+ PDVVT +++ D L K
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 125 DGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYS 170
+G+ EA + + M +R + P TY TL+ G+A G D Y
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MA 212
++ILI Y K V+ A+ + +M +G+ +A TY + M
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 213 INNVPPDSHVYTTYIDGLYK-NGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
+ P + VY + I GL N + + + C+ TI N +ID CK GR+
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI-FFNSIIDSHCKEGRV 492
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +F LM G+ P+V+TYN +I+G+C G+ +A LL M GL+PN
Sbjct: 493 IESEKLFE-LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPN 545
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 55/354 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ +T+NS++ G C+ G+ EA KK+ +P+V+T++ L + A +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
F+ M KP++ T ++ G G M+ G+ PD +++
Sbjct: 324 FDSMTKRG---LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK----GCRHD 167
+K GK+++A + M Q+ +NPN TY ++ D ++ + G
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL------------------ 209
YN LI+G C E A L EML GI + +N++
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
M V P+ Y T I+G G + EAMK+ S + + T + LI+G CKI
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
R++ A +F M++ G++PD++TYNI++ G + + A L + + E+G +
Sbjct: 561 RMEDALVLFKE-MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQ 613
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 112/266 (42%), Gaps = 37/266 (13%)
Query: 96 GLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA-NCLLEVMIQRDVNPNTCTYNTLM 154
G G ++ +G R D + + L D + +A + +L M + PN +YN L+
Sbjct: 106 GFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILL 165
Query: 155 DGFAWWSK-----------------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSE 197
G ++ G DV SY +ING+ K+ + + A S EML
Sbjct: 166 KGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR 225
Query: 198 GIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEA 239
GI D TYN++ A+ N V PD Y + + G +G EA
Sbjct: 226 GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 285
Query: 240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIH 299
+ + + + T + L+D LCK GR A IF M GL P++ TY ++
Sbjct: 286 IGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS-MTKRGLKPEITTYGTLLQ 344
Query: 300 GFCKEGQHQKANGLLLDMEETGLEPN 325
G+ +G + +GLL M G+ P+
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPD 370
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 167 DVYSYNILI-----------------------------------NGYCKDRNVEDAVSLC 191
D+ +Y ILI G C D+ DA+ +
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 192 -REMLSEGIRADATTYNTLFMAI---------------------NNVPPDSHVYTTYIDG 229
R M G + +YN L + PPD YTT I+G
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
+K G +A + + + + + T N +I LCK + A ++ + +++N G+ P
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMP 264
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D +TYN ++HG+C GQ ++A G L M G+EP+
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPD 300
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 22/223 (9%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ LL ++ PN VT+++LI G C R+ +A LFK++ P++IT+
Sbjct: 525 GKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITY 584
Query: 62 N--------TLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQG- 107
N T A + E G + ++ T I+ GLCK D M Q
Sbjct: 585 NIILQGLFQTRRTAAAKELYVRITESGT--QIELSTYNIILHGLCKNKLTDDALQMFQNL 642
Query: 108 ----MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKG 163
++ + T N+M D L K G+ +EA L + PN TY + +
Sbjct: 643 CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLL 702
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
D ++ NG D + + + RE+L G A TY
Sbjct: 703 EELDQLFLSMEDNGCTVDSGMLNFI--VRELLQRGEITRAGTY 743
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 168/373 (45%), Gaps = 49/373 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G ++ +L + P++ T+NS+I GLC G + EA + ++ C PN +T+
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLC--------KDGF--MMD 105
NTL L N EE V+ PDV T ++I GLC + F M
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--- 162
+G PD T N++ D+L GK++EA +L+ M + TYNTL+DGF +K
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 163 -----------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
G + +YN LI+G CK R VEDA L +M+ EG + D TYN+L
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M N PD Y T I GL K G V A K+ +I L
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH-QKANG 312
T N +I GL + + A ++F +++ PD V+Y I+ G C G ++A
Sbjct: 609 TPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVD 668
Query: 313 LLLDMEETGLEPN 325
L+++ E G P
Sbjct: 669 FLVELLEKGFVPE 681
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 163/359 (45%), Gaps = 56/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VAL 69
P+ TF ++++G EG + A R+ +++ F C + ++ N + AL
Sbjct: 220 LVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDAL 279
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
N +EM N+ G PD T +++GLCK G M+ +G PDV T N +
Sbjct: 280 NFIQEMSNQDGFF--PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCR 165
L K G+++EA +L+ MI RD +PNT TYNTL+ SKG
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV ++N LI G C RN A+ L EM S+G D TYN L
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
M ++ Y T IDG K EA ++F + H T N LIDGLCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517
Query: 268 IGRLKIAWDIF-HMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
R++ A + M+M+ G PD TYN ++ FC+ G +KA ++ M G EP+
Sbjct: 518 SRRVEDAAQLMDQMIME--GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 154/359 (42%), Gaps = 55/359 (15%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEE-- 74
F+P + ++ L G + ++ + + C+ TF L + L +E
Sbjct: 79 FSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 75 -----MVNEFGVICKPDVVTCTNIIDGLC----------KDGFMMDQGMRPDVVTLNVMT 119
M++EFG+ KPD +++ L M G++PDV T NV+
Sbjct: 139 SVVDWMIDEFGL--KPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLI 196
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCR 165
L + ++ A +LE M + P+ T+ T+M G+ GC
Sbjct: 197 KALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCS 256
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSE-GIRADATTYNTL--------------- 209
S N++++G+CK+ VEDA++ +EM ++ G D T+NTL
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 210 ---FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
M PD + Y + I GL K G V EA++V + C T N LI LC
Sbjct: 317 IMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K +++ A ++ +L + G+ PDV T+N +I G C H+ A L +M G EP+
Sbjct: 377 KENQVEEATELARVLT-SKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 160/344 (46%), Gaps = 79/344 (22%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
+ +L S +PN+ T+N LI+G C G I A LF K+ C PNV+T+NTL
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTL----- 246
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCK-----DGF-----MMDQGMRPDVVTLNVMT 119
IDG CK DGF M +G+ P++++ NV+
Sbjct: 247 ------------------------IDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYC 179
+ L ++G+M+E + +L M +R + + TYNT LI GYC
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT---------------------LIKGYC 321
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
K+ N A+ + EML G+ TY +L M + + P+
Sbjct: 322 KEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNER 381
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
YTT +DG + G++ EA +V + ++ ++ T N LI+G C G+++ A +
Sbjct: 382 TYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED- 440
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ GL+PDVV+Y+ ++ GFC+ +A + +M E G++P+
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 175/418 (41%), Gaps = 107/418 (25%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
GF LL + + PN++++N +I GLC EGR+ E + + ++N + +T+NTL
Sbjct: 259 GFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 67 ---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------------ 99
AL + EM+ G+ P V+T T++I +CK
Sbjct: 319 GYCKEGNFHQALVMHAEMLRH-GLT--PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375
Query: 100 ------------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
DGF M D G P VVT N + + GKME+A
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGY 178
+LE M ++ ++P+ +Y+T++ GF KG + D +Y+ LI G+
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDS 220
C+ R ++A L EML G+ D TY L M V PD
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT-------IETCN--------CLIDGL 265
Y+ I+GL K EA ++ + + V + IE C+ LI G
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGF 615
Query: 266 CKIGRLKIAWDIFH-MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
C G + A +F ML +N PD YNIMIHG C+ G +KA L +M ++G
Sbjct: 616 CMKGMMTEADQVFESMLGKNH--KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 106/235 (45%), Gaps = 33/235 (14%)
Query: 106 QGMRPDVVTLNVMTDNLSKDGK-MEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G P V++ N + D + + + A + + M++ V+PN TYN L+ GF +
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+KGC +V +YN LI+GYCK R ++D L R M +G+ + +YN +
Sbjct: 223 VALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVV- 281
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I+GL + G + E V + + L T N LI G CK G
Sbjct: 282 ----------------INGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A + H M GLTP V+TY +IH CK G +A L M GL PN
Sbjct: 326 FHQAL-VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPN 379
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 51/262 (19%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L + +P++V++++++ G C + EA R+ +++ P+ IT+
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------F 102
++L A +L+EEM+ V PD T T +I+ C +G
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEMLR---VGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD------- 155
M+++G+ PDVVT +V+ + L+K + EA LL + + P+ TY+TL++
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEF 605
Query: 156 --------GF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCRE 193
GF + K + D +YNI+I+G+C+ ++ A +L +E
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Query: 194 MLSEGIRADATTYNTLFMAINN 215
M+ G T L A++
Sbjct: 666 MVKSGFLLHTVTVIALVKALHK 687
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 167/369 (45%), Gaps = 49/369 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ +L R+L P+++T+ LI+ C + + A +L ++ C P+V+T+
Sbjct: 218 GKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
N L + +E + + C+P+V+T I+ +C G MD
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G P VVT N++ + L + G + A +LE M Q PN+ +YN L+ GF
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDR 397
Query: 158 ------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF- 210
S+GC D+ +YN ++ CKD VEDAV + ++ S+G TYNT+
Sbjct: 398 AIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 211 -----------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL 253
M ++ PD+ Y++ + GL + G V EA+K F
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517
Query: 254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGL 313
T N ++ GLCK + A D F + M N G P+ +Y I+I G EG ++A L
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAID-FLVFMINRGCKPNETSYTILIEGLAYEGMAKEALEL 576
Query: 314 LLDMEETGL 322
L ++ GL
Sbjct: 577 LNELCNKGL 585
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 170/357 (47%), Gaps = 55/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
+P++VT+N++++ LC G++ +A + ++ C P+VIT+ L A+
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
L +EM + C PDVVT +++G+CK+G M G +P+V+T N++
Sbjct: 261 LLDEMRDRG---CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD--------GFA------WWSKGCRH 166
++ G+ +A LL M+++ +P+ T+N L++ G A GC+
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------- 213
+ SYN L++G+CK++ ++ A+ M+S G D TYNT+ A+
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 214 -----NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P Y T IDGL K G +A+K+ + T + L+ GL +
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G++ A FH + G+ P+ VT+N ++ G CK Q +A L+ M G +PN
Sbjct: 498 GKVDEAIKFFHEF-ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPN 553
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 169/404 (41%), Gaps = 81/404 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G GF L ++ P+++ +LI+G C G+ +AA++ + L P+VIT+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 62 NTLALV---------ALNLFEEMVNEFGVI-----------------------------C 83
N + AL++ + M V+ C
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDC 235
Query: 84 KPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
PDV+T T +I+ C+D M D+G PDVVT NV+ + + K+G+++EA
Sbjct: 236 YPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF---AWW-----------SKGCRHDVYSYNILINGYC 179
L M PN T+N ++ W KG V ++NILIN C
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSH 221
+ + A+ + +M G + ++ +YN L M PD
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
Y T + L K+G V +A+++ + + + C + T N +IDGL K G+ A +
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDE- 474
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ L PD +TY+ ++ G +EG+ +A + E G+ PN
Sbjct: 475 MRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVY 169
+ G++EE LE M+ P+ TL+ GF K G DV
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
+YN++I+GYCK + +A+S+ M +V PD Y T +
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM--------------------SVSPDVVTYNTILRS 213
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
L +G + +AM+V + C + T LI+ C+ + A + M++ G TP
Sbjct: 214 LCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDE-MRDRGCTP 272
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
DVVTYN++++G CKEG+ +A L DM +G +PN
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPN 308
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 165/358 (46%), Gaps = 56/358 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------------ALVA 68
PN+ TFN +I LC G++ +A + + + V+ C PNV+++NTL A
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVM 118
+ +EMV P++ T +IDG KD M+DQ ++P+V++ N +
Sbjct: 281 DAVLKEMVEN---DVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ L GK+ EA + + M+ V PN TYN L++GF + +G
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---NNVP---- 217
YN+LI+ YCK ++D +L EM EGI D TYN L + N+
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457
Query: 218 ----------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
PD + ++G + G +A + + T N ++ G CK
Sbjct: 458 LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCK 517
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G LK A ++ + + L +V +YN+++ G+ ++G+ + AN LL +M E GL PN
Sbjct: 518 EGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 158/326 (48%), Gaps = 56/326 (17%)
Query: 48 KLNVFCCDPNVITF---NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM 104
KL+ C P +I N A V +++EM+ +P+V T +I+ LCK G M
Sbjct: 185 KLSALSCKPLMIALLKENRSADVEY-VYKEMIRR---KIQPNVFTFNVVINALCKTGKMN 240
Query: 105 DQ----------GMRPDVVTLNVMTD---NLSKDGKMEEANCLLEVMIQRDVNPNTCTYN 151
G P+VV+ N + D L +GKM +A+ +L+ M++ DV+PN T+N
Sbjct: 241 KARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFN 300
Query: 152 TLMDGFAW---------------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
L+DGF W + + +V SYN LING C + +A+S+ +M+S
Sbjct: 301 ILIDGF-WKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVS 359
Query: 197 EGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLE 238
G++ + TYN L P + +Y ID K G + +
Sbjct: 360 AGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDD 419
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
+ + V + T NCLI GLC+ G ++ A +F L + GL PD+VT++I++
Sbjct: 420 GFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL-TSKGL-PDLVTFHILM 477
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEP 324
G+C++G+ +KA LL +M + GL+P
Sbjct: 478 EGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 116/267 (43%), Gaps = 67/267 (25%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL- 64
G + +L PN++++NSLI GLC G+I EA + K+ PN+IT+N L
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 65 -ALVALNLFEEMVNEFGVI-------------------CK-------------------- 84
++ +E ++ FG + CK
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433
Query: 85 PDVVTCTNIIDGLCKDG------FMMDQ----GMRPDVVTLNVMTDNLSKDGKMEEANCL 134
PDV T +I GLC++G + DQ G+ PD+VT +++ + + G+ +A L
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAML 492
Query: 135 LEVMIQRDVNPNTCTYNTLMDGF---------------AWWSKGCRHDVYSYNILINGYC 179
L+ M + + P TYN +M G+ + R +V SYN+L+ GY
Sbjct: 493 LKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552
Query: 180 KDRNVEDAVSLCREMLSEGIRADATTY 206
+ +EDA L EML +G+ + TY
Sbjct: 553 QKGKLEDANMLLNEMLEKGLVPNRITY 579
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 24/175 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ GF L + P++ T+N LI GLC G I A +LF +L P+++T
Sbjct: 414 LGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVT 472
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------- 104
F+ L + A L +EM ++ G+ KP +T ++ G CK+G +
Sbjct: 473 FHILMEGYCRKGESRKAAMLLKEM-SKMGL--KPRHLTYNIVMKGYCKEGNLKAATNMRT 529
Query: 105 ----DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
++ +R +V + NV+ S+ GK+E+AN LL M+++ + PN TY + +
Sbjct: 530 QMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKE 584
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 231 YKNGFVLE-AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTP 289
Y N E + F G + L+ +C L+ L K R ++ +++ + P
Sbjct: 163 YANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK-IQP 221
Query: 290 DVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+V T+N++I+ CK G+ KA ++ DM+ G PN
Sbjct: 222 NVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPN 257
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 160/354 (45%), Gaps = 54/354 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
N V + LI GLC RI EA LF K+ C P V T+ L ALNL
Sbjct: 287 NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLV 346
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRPDVVTLNVMTDNL 122
+EM E G+ KP++ T T +ID LC G M+++G+ P+V+T N + +
Sbjct: 347 KEM-EETGI--KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVY 169
K G +E+A ++E+M R ++PNT TYN L+ G+ + DV
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVV 463
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI---------------- 213
+YN LI+G C+ N + A L M G+ D TY ++ ++
Sbjct: 464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 214 --NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
V P+ +YT IDG K G V EA + + + C+ T N LI GLC G+L
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K A + M GL P V T I+IH K+G A M +G +P+
Sbjct: 584 KEA-TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPD 636
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 159/349 (45%), Gaps = 55/349 (15%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALV 67
LLG++L PN++T+N+LI G C G I +A + + + PN T+N L
Sbjct: 380 LLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439
Query: 68 ALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMMDQGMRP 110
N+ + M GV+ K PDVVT ++IDG C+ G M D+G+ P
Sbjct: 440 KSNVHKAM----GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
D T M D+L K ++EEA L + + Q+ VNPN Y L+DG+
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNV 216
SK C + ++N LI+G C D +++A L +M+ G++ +T L
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTIL------- 608
Query: 217 PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWD 276
I L K+G A F + + T I C+ GRL A D
Sbjct: 609 ----------IHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAED 658
Query: 277 IFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + +N G++PD+ TY+ +I G+ GQ A +L M +TG EP+
Sbjct: 659 MMAKMREN-GVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPS 706
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/375 (26%), Positives = 167/375 (44%), Gaps = 56/375 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G + +I+ + P+ T+ SLI G C + A ++F ++ + C N +
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+ L A++LF +M ++ C P V T T +I LC
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDE---CFPTVRTYTVLIKSLCGSERKSEALNLVK 347
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M + G++P++ T V+ D+L K E+A LL M+++ + PN TYN L++G+
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 159 -----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
S+ + +YN LI GYCK NV A+ + +ML + D TYN
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYN 466
Query: 208 TL------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
+L M + PD YT+ ID L K+ V EA +F ++
Sbjct: 467 SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK 526
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG CK G++ A + ++ L P+ +T+N +IHG C +G+ ++
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCL-PNSLTFNALIHGLCADGKLKE 585
Query: 310 ANGLLLDMEETGLEP 324
A L M + GL+P
Sbjct: 586 ATLLEEKMVKIGLQP 600
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 155/355 (43%), Gaps = 54/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
PN+ T+N ++ G C G + EA + K+ DP+ T+ +L + A +
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLC--------KDGF--MMDQGMRPDVVTLNVMTDN 121
F EM + C+ + V T++I GLC D F M D P V T V+ +
Sbjct: 276 FNEMPLKG---CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKS 332
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHD 167
L + EA L++ M + + PN TY L+D KG +
Sbjct: 333 LCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V +YN LINGYCK +EDAV + M S + + TYN L
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNK 452
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M V PD Y + IDG ++G A ++ S + + V T +ID LCK R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
++ A D+F L Q G+ P+VV Y +I G+CK G+ +A+ +L M PN
Sbjct: 513 VEEACDLFDSLEQK-GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M++ + P++ T N M + K G +EEAN + +++ ++P+ TY +L+ G+
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKD 268
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KGCR + +Y LI+G C R +++A+ L +M + TY
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328
Query: 209 LFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L ++ + P+ H YT ID L +A ++ +
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + T N LI+G CK G ++ A D+ LM++ L+P+ TYN +I G+CK H KA
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVE-LMESRKLSPNTRTYNELIKGYCKSNVH-KA 446
Query: 311 NGLLLDMEETGLEPN 325
G+L M E + P+
Sbjct: 447 MGVLNKMLERKVLPD 461
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 151/371 (40%), Gaps = 74/371 (19%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNLF 72
PN+V + +LI G C G++ EA + +K+ C PN +TFN L L L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
EE + + G+ +P V T T +I L KDG M+ G +PD T
Sbjct: 590 EEKMVKIGL--QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDV 168
++G++ +A ++ M + V+P+ TY++L+ G+ + GC
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 169 YSYNILIN-----GYCKDRNVED-------------AVSLCREMLSEGIRADATTYNTLF 210
+++ LI Y K + E V L +M+ + +A +Y L
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL----------------- 253
+ I V + V D + +N + + VF+A+ + C L
Sbjct: 768 LGICEVG-NLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVG 826
Query: 254 ---TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+E+C LI GL K G + +F L+Q G D + + I+I G K+G +
Sbjct: 827 HLPQLESCKVLICGLYKKGEKERGTSVFQNLLQC-GYYEDELAWKIIIDGVGKQGLVEAF 885
Query: 311 NGLLLDMEETG 321
L ME+ G
Sbjct: 886 YELFNVMEKNG 896
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/365 (21%), Positives = 130/365 (35%), Gaps = 102/365 (27%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ ++L ++L PN +TFN+LI GLC +G++ EA L +K+ P V T
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 62 NTL--ALVALNLFEEMVNEFGVI----CKPDVVTCTNIIDGLCKDGFMMD---------- 105
L L+ F+ + F + KPD T T I C++G ++D
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRE 665
Query: 106 QGMRPDVVTLNVMTDNLSKDG----------KMEEANC-------------LLEVMI--Q 140
G+ PD+ T + + G +M + C LLE+ Q
Sbjct: 666 NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQ 725
Query: 141 RDVNPNTCTYNTLMDG---FAWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSLCRE 193
+ P C + +M+ K H V SY LI G C+ N+ A +
Sbjct: 726 KGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDH 785
Query: 194 M-LSEGIRADATTYNTLF-------------------MAINNVPP--------------- 218
M +EGI +N L + + ++P
Sbjct: 786 MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKG 845
Query: 219 -------------------DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCN 259
D + IDG+ K G V ++F+ + + C + +T +
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905
Query: 260 CLIDG 264
LI+G
Sbjct: 906 LLIEG 910
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 223 YTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLM 282
Y T ++ L + G V E +V+ + K I T N +++G CK+G ++ A ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 283 QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL PD TY +I G+C+ A + +M G N
Sbjct: 246 E-AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 171/375 (45%), Gaps = 55/375 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F LL + F+PN+V + +LI G C +G I +A LF ++ N T+
Sbjct: 177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236
Query: 62 ---------NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF---------- 102
N + ++E+M E GV P++ T +++ LCKDG
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKM-QEDGVF--PNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA---- 158
M ++G+ ++VT N + L ++ K+ EAN +++ M +NPN TYNTL+DGF
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 159 ----------WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
S+G + +YNIL++G+C+ + A + +EM GI+ TY
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 209 L---FMAINNVP---------------PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L F +N+ PD H Y+ I G G + EA ++F ++
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
C N +I G CK G A + M+ L P+V +Y MI CKE + ++A
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKE-MEEKELAPNVASYRYMIEVLCKERKSKEA 532
Query: 311 NGLLLDMEETGLEPN 325
L+ M ++G++P+
Sbjct: 533 ERLVEKMIDSGIDPS 547
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 165/355 (46%), Gaps = 55/355 (15%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++ +F LIKG C G I ++ L +L F PNV+ + TL A +LF
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNL 122
EM + G++ T T +I+GL K+G M + G+ P++ T N + + L
Sbjct: 222 FEM-GKLGLVANER--TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQL 278
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDV 168
KDG+ ++A + + M +R V+ N TYNTL+ G S G ++
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 169 YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
+YN LI+G+C + A+SLCR++ S G+ TYN L
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M + P YT ID ++ + +A+++ ++ V + T + LI G C G+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A +F +++ P+ V YN MI G+CKEG +A LL +MEE L PN
Sbjct: 459 MNEASRLFKSMVEK-NCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 44/253 (17%)
Query: 100 DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANC---LLEVMIQRDVNPNTCTYNTLMDG 156
+ ++ Q + + N M DN G + +NC LL ++ + ++N
Sbjct: 102 NSYVQSQSLNLSISYFNEMVDN----GFVPGSNCFNYLLTFVV------GSSSFN----- 146
Query: 157 FAWWS------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
WWS DVYS+ ILI G C+ +E + L E+ G + Y TL
Sbjct: 147 -QWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLI 205
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M + + YT I+GL+KNG + +++ +
Sbjct: 206 DGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVF 265
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ T NC+++ LCK GR K A+ +F M+ G++ ++VTYN +I G C+E + +AN
Sbjct: 266 PNLYTYNCVMNQLCKDGRTKDAFQVFDE-MRERGVSCNIVTYNTLIGGLCREMKLNEANK 324
Query: 313 LLLDMEETGLEPN 325
++ M+ G+ PN
Sbjct: 325 VVDQMKSDGINPN 337
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
PN++T+N+LI G C G++ +A L + L P+++T+N L A +
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+EM E G+ KP VT T +ID + M + G+ PDV T +V+
Sbjct: 396 VKEM-EERGI--KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH--------------D 167
G+M EA+ L + M++++ PN YNT++ G+ R +
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHV 222
V SY +I CK+R ++A L +M+ GI D +T ++ I+ DSHV
Sbjct: 513 VASYRYMIEVLCKERKSKEAERLVEKMIDSGI--DPST--SILSLISRAKNDSHV 563
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSL 190
A LL +I ++ T ++L+ + S+ + Y ++IN Y + +++ ++S
Sbjct: 58 AQSLLLQVISGKIHSQFFTSSSLLH-YLTESETSKTKFRLYEVIINSYVQSQSLNLSISY 116
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
EM+ G + +N L + + ++ + + K
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE------------------NKSK 158
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
VL + + LI G C+ G ++ ++D+ L + G +P+VV Y +I G CK+G+ +KA
Sbjct: 159 VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTE-FGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 311 NGLLLDMEETGLEPN 325
L +M + GL N
Sbjct: 218 KDLFFEMGKLGLVAN 232
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 55/362 (15%)
Query: 3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT-- 60
+ S LG+++ P++VT +SL+ G C I +A + ++ +V+
Sbjct: 138 QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDT 197
Query: 61 -------FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMR---- 109
N L + AL + + M + G+ P+VVT +++I GLCK G + D R
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDR-GI--SPNVVTYSSLITGLCKSGRLADAERRLHEM 254
Query: 110 ------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
P+V+T + + D +K GK+ + + + ++MIQ ++PN TY++L+ G
Sbjct: 255 DSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRV 314
Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKGC +V +Y+ L NG+ K V+D + L +M G+ A+ + NTL
Sbjct: 315 DEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTL 374
Query: 210 ------------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+M N + P+ Y + GL+ NG V +A+ F + +
Sbjct: 375 IKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRN 434
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
L I T +I G+CK +K A+D+F+ L + + PD Y IMI + G +A+
Sbjct: 435 DLDIITYTIMIHGMCKACMVKEAYDLFYKL-KFKRVEPDFKAYTIMIAELNRAGMRTEAD 493
Query: 312 GL 313
L
Sbjct: 494 AL 495
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 159/394 (40%), Gaps = 87/394 (22%)
Query: 13 RILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------ 66
R + F+ + + +++ + +A LF + P+++ FN +
Sbjct: 40 RFWVRAFSGTTIDYREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQ 99
Query: 67 ---VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----------DGFMMDQGMRPDVV 113
V +NL++ + N G+ PD+ TC +++ C+ G MM G+ PD+V
Sbjct: 100 MYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIV 159
Query: 114 TL----------NVMTDNLSKDGKMEE-------------------------ANCLLEVM 138
T N + D + G+ME+ A +L+ M
Sbjct: 160 TASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRM 219
Query: 139 IQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNV 184
R ++PN TY++L+ G SK +V +++ LI+ Y K +
Sbjct: 220 KDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKL 279
Query: 185 EDAVSLCREMLSEGIRADATTYNTLFMAI---NNV---------------PPDSHVYTTY 226
S+ + M+ I + TY++L + N V P+ Y+T
Sbjct: 280 SKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTL 339
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
+G +K+ V + +K+ + +CN LI G + G++ +A +F + N G
Sbjct: 340 ANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSN-G 398
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
L P++ +YNI++ G G+ +KA M++T
Sbjct: 399 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKT 432
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 24/162 (14%)
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL---FMAINNVPPDSHVY 223
D+Y+ NIL+N +C+ A+S +M+ GI D T ++L F N++
Sbjct: 122 DLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIK------ 175
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
D +Y G +E M + K + ++T LID LCK + A ++ M+
Sbjct: 176 ----DAVYVAG-QMEKMGI-------KRDVVVDTI--LIDTLCKNRLVVPALEVLKR-MK 220
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G++P+VVTY+ +I G CK G+ A L +M+ + PN
Sbjct: 221 DRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPN 262
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 162/359 (45%), Gaps = 56/359 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M R +L R+ F+P+ VT+N +I LC+ G++ A ++ +L C P VIT
Sbjct: 171 MNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVIT 230
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD------ 105
+ L AL L +EM++ G+ KPD+ T II G+CK+G M+D
Sbjct: 231 YTILIEATMLEGGVDEALKLMDEMLSR-GL--KPDMFTYNTIIRGMCKEG-MVDRAFEMV 286
Query: 106 -----QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----D 155
+G PDV++ N++ L GK EE L+ M +PN TY+ L+ D
Sbjct: 287 RNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRD 346
Query: 156 GFAWWS---------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
G + KG D YSY+ LI +C++ ++ A+ M+S+G D Y
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NT+ L KNG +A+++F +G C + N + L
Sbjct: 407 NTVLAT-----------------LCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G A + +M N G+ PD +TYN MI C+EG +A LL+DM P+
Sbjct: 450 SSGDKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPS 507
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 56/350 (16%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G L+ +L P+M T+N++I+G+C EG + A + + L + C+P+VI++
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISY 301
Query: 62 NTLALVALNL--FEE----MVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMD 105
N L LN +EE M F C P+VVT + +I LC+DG M +
Sbjct: 302 NILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR 165
+G+ PD + + + ++G+++ A LE MI S GC
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI---------------------SDGCL 400
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI------------ 213
D+ +YN ++ CK+ + A+ + ++ G ++++YNT+F A+
Sbjct: 401 PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHM 460
Query: 214 ------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
N + PD Y + I L + G V EA ++ + + + ++ T N ++ G CK
Sbjct: 461 ILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCK 520
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDM 317
R++ A ++ ++ N G P+ TY ++I G G +A L D+
Sbjct: 521 AHRIEDAINVLESMVGN-GCRPNETTYTVLIEGIGFAGYRAEAMELANDL 569
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 137/299 (45%), Gaps = 45/299 (15%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGL---------CKDGFMMDQGMRPDVVTLNVM 118
+L+L E MV + PDV+ CT +I G + ++++ +PDV N +
Sbjct: 108 SLHLLETMVRKG---YNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNAL 164
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGC 164
+ K ++++A +L+ M +D +P+T TYN ++ S C
Sbjct: 165 INGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNC 224
Query: 165 RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL-------------FM 211
+ V +Y ILI + V++A+ L EMLS G++ D TYNT+ F
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284
Query: 212 AINNV-----PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
+ N+ PD Y + L G E K+ + + + KC + T + LI LC
Sbjct: 285 MVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLC 344
Query: 267 KIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ G+++ A ++ LM+ GLTPD +Y+ +I FC+EG+ A L M G P+
Sbjct: 345 RDGKIEEAMNLLK-LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPD 402
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------------AWWSKGCRHDVYS 170
+ G E+ LLE M+++ NP+ L+ GF K + DV++
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFA 160
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI----------------- 213
YN LING+CK ++DA + M S+ D TYN + ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 214 -NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
+N P YT I+ G V EA+K+ + + + T N +I G+CK G +
Sbjct: 221 SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 280
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+++ L + G PDV++YNI++ +G+ ++ L+ M +PN
Sbjct: 281 RAFEMVRNL-ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 160/339 (47%), Gaps = 52/339 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L L PN++ +N+LIKGL +G ILEAA+L +++ P V TF
Sbjct: 370 GETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTF 429
Query: 62 NTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDN 121
N L VN +CK + C + DGL K M+ +G PD+ T N++
Sbjct: 430 NIL-----------VNG---LCK---MGCVSDADGLVK--VMISKGYFPDIFTFNILIHG 470
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHD 167
S KME A +L+VM+ V+P+ TYN+L++G S KGC +
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYI 227
++++NIL+ C+ R +++A+ L EM ++ + DA T+ TL I
Sbjct: 531 LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTL-----------------I 573
Query: 228 DGLYKNGFVLEAMKVFSAIGN-HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
DG KNG + A +F + +K + T N +I + + +A +F M +
Sbjct: 574 DGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE-MVDRC 632
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L PD TY +M+ GFCK G LL+M E G P+
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 159/351 (45%), Gaps = 52/351 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G ++G ++ P+++T+N+LI GLC + EA K+ +P+ T+
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTY 324
Query: 62 NTLAL-----VALNLFEEMVNEF---GVICKPDVVTCTNIIDGLCKDG----------FM 103
NTL + L E +V + G + PD T ++IDGLC +G
Sbjct: 325 NTLIAGYCKGGMVQLAERIVGDAVFNGFV--PDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------ 157
+ +G++P+V+ N + LS G + EA L M ++ + P T+N L++G
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442
Query: 158 --------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
SKG D++++NILI+GY +E+A+ + ML G+ D TYN+L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
++GL K + M+ + + C + T N L++ LC+
Sbjct: 503 -----------------LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545
Query: 270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
+L A + M+N + PD VT+ +I GFCK G A L MEE
Sbjct: 546 KLDEALGLLEE-MKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEA 595
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 162/334 (48%), Gaps = 53/334 (15%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G+ L G++L S + + TFN L++ LC +G + E +L K+ PN+ T+N
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYN---- 255
Query: 67 VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKD 125
LF + + + G + DG + G +++QG +PDV+T N + L K+
Sbjct: 256 ----LFIQGLCQRGEL------------DGAVRMVGCLIEQGPKPDVITYNNLIYGLCKN 299
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS--------------KGCRHDVYSY 171
K +EA L M+ + P++ TYNTL+ G+ G D ++Y
Sbjct: 300 SKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTY 359
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
LI+G C + A++L E L +GI+ + YNTL I GL
Sbjct: 360 RSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTL-----------------IKGLS 402
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
G +LEA ++ + + + ++T N L++GLCK+G + A D +M + G PD+
Sbjct: 403 NQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA-DGLVKVMISKGYFPDI 461
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
T+NI+IHG+ + + + A +L M + G++P+
Sbjct: 462 FTFNILIHGYSTQLKMENALEILDVMLDNGVDPD 495
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 153/382 (40%), Gaps = 90/382 (23%)
Query: 30 IKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------------------- 67
+K +G++ EA +F++++ + C+P V ++N + V
Sbjct: 83 MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142
Query: 68 ----------------------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--- 102
AL L M ++ C+ +VV ++ G ++ F
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG---CEMNVVAYCTVVGGFYEENFKAE 199
Query: 103 -------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
M+ G+ + T N + L K G ++E LL+ +I+R V PN TYN +
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259
Query: 156 GFAWW--------------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
G +G + DV +YN LI G CK+ ++A +M++EG+
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEP 319
Query: 202 DATTYNTLFMA------------------INNVPPDSHVYTTYIDGLYKNGFVLEAMKVF 243
D+ TYNTL N PD Y + IDGL G A+ +F
Sbjct: 320 DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALF 379
Query: 244 SAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
+ + N LI GL G + A + + M GL P+V T+NI+++G CK
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE-MSEKGLIPEVQTFNILVNGLCK 438
Query: 304 EGQHQKANGLLLDMEETGLEPN 325
G A+GL+ M G P+
Sbjct: 439 MGCVSDADGLVKVMISKGYFPD 460
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 63/327 (19%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
MG S L+ ++ + P++ TFN LI G T+ ++ A + + DP+V T
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYT 498
Query: 61 FNTL--ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVM 118
+N+L L + FE+++ + M+++G P++ T N++
Sbjct: 499 YNSLLNGLCKTSKFEDVMETYKT---------------------MVEKGCAPNLFTFNIL 537
Query: 119 TDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGY 178
++L + K++EA LLE M + VNP+ T+ TL+DGF
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF--------------------- 576
Query: 179 CKDRNVEDAVSLCREM-LSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
CK+ +++ A +L R+M + + + TYN + H +T ++ V
Sbjct: 577 CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIII----------HAFTEKLN-------VT 619
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A K+F + + T ++DG CK G + + + +M+N G P + T +
Sbjct: 620 MAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN-GFIPSLTTLGRV 678
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEP 324
I+ C E + +A G++ M + GL P
Sbjct: 679 INCLCVEDRVYEAAGIIHRMVQKGLVP 705
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 222 VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHML 281
VY + + G V EA+ VF + + C T+ + N ++ L G A ++ M
Sbjct: 78 VYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVY-MR 136
Query: 282 MQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M++ G+TPDV ++ I + FCK + A LL +M G E N
Sbjct: 137 MRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMN 180
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 159/357 (44%), Gaps = 54/357 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALN 70
P+ VT+NS+I G GR+ + F+++ CC+P+VIT+N L + L
Sbjct: 294 VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLE 353
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTD 120
+ EM G KP+VV+ + ++D CK+G M G+ P+ T + D
Sbjct: 354 FYREMK---GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
K G + +A L M+Q V N TY L+DG + G
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN----------- 215
++ SYN LI+G+ K +N++ A+ L E+ GI+ D Y T + +
Sbjct: 471 NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM 530
Query: 216 -------VPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+ +S +YTT +D +K+G E + + + +T+ T LIDGLCK
Sbjct: 531 NEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKN 590
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ A D F+ + + GL + + MI G CK+ Q + A L M + GL P+
Sbjct: 591 KLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPD 647
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 60/342 (17%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
P F++L L G + EA + F K+ F P + N L ++ F
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGL-----------LHRF 237
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
+ K D V KD M+ G RP V T N+M D + K+G +E A L E M
Sbjct: 238 AKLGKTDDVK------RFFKD--MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
Query: 140 QRDVNPNTCTYNTLMDGFAWWSK--------------GCRHDVYSYNILINGYCKDRNVE 185
R + P+T TYN+++DGF + C DV +YN LIN +CK +
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+ REM G++ + +Y+TL M + P+ + YT+ I
Sbjct: 350 IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 409
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIE----TCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
D K G + +A + +GN + +E T LIDGLC R+K A ++F M
Sbjct: 410 DANCKIGNLSDAFR----LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGK-MD 464
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G+ P++ +YN +IHGF K +A LL +++ G++P+
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 139/323 (43%), Gaps = 49/323 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G S F L +L N+VT+ +LI GLC R+ EA LF K++ PN+ +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Query: 61 FNTLA---LVALNLFE--EMVNEF-GVICKPDVVTCTNIIDGLCK----------DGFMM 104
+N L + A N+ E++NE G KPD++ I GLC M
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA------ 158
+ G++ + + + D K G E LL+ M + D+ T+ L+DG
Sbjct: 535 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 594
Query: 159 ----WWSK-----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
++++ G + + + +I+G CKD VE A +L +M+ +G+
Sbjct: 595 KAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL---------- 644
Query: 210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
PD YT+ +DG +K G VLEA+ + + L + L+ GL
Sbjct: 645 -------VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCN 697
Query: 270 RLKIAWDIFHMLMQNPGLTPDVV 292
+L+ A ++ G+ PD V
Sbjct: 698 QLQKARSFLEEMI-GEGIHPDEV 719
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 157 FAWWS---KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
F WS G +H V SY I+ + R DA S+ +EM+ +AD ++ L+
Sbjct: 128 FFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLS--KADCDVFDVLWSTR 185
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
N P V+ L G + EA++ FS + + +CN L+ K+G+
Sbjct: 186 NVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDD 245
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F ++ G P V TYNIMI CKEG + A GL +M+ GL P+
Sbjct: 246 VKRFFKDMI-GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 296
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 62/342 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+ T++++I G C G + +A L+K++ V PNV+ F TL + A +L
Sbjct: 267 PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSL 326
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F MV +FGV P++ +I G CK G M++ + PDV T ++ +
Sbjct: 327 FVHMV-KFGV--DPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILING 383
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L + ++ EAN L + M + P++ TYN+L I+GYCK+
Sbjct: 384 LCIEDQVAEANRLFQKMKNERIFPSSATYNSL---------------------IHGYCKE 422
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVY 223
N+E A+ LC EM + G+ + T++TL M I + PD Y
Sbjct: 423 YNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTY 482
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
T ID +K + EA++++S + T CL+DG K GRL +A D + Q
Sbjct: 483 TALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQ 542
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ V + +I G C+ G +A+ DM G+ P+
Sbjct: 543 QRSCW-NHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPD 583
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 156/357 (43%), Gaps = 54/357 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G + L IL++ PN+V F +L+ G C ++ A LF + F DPN+ +
Sbjct: 283 GNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVY 342
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GF 102
N L L A+ L EM + + PDV T T +I+GLC +
Sbjct: 343 NCLIHGHCKSGNMLEAVGLLSEMES---LNLSPDVFTYTILINGLCIEDQVAEANRLFQK 399
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG------ 156
M ++ + P T N + K+ ME+A L M V PN T++TL+DG
Sbjct: 400 MKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRD 459
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
F KG DV +Y LI+ + K+ N+++A+ L +ML GI
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIH-------- 511
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
P+ H + +DG +K G + A+ + + CLI+GLC+
Sbjct: 512 ---------PNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQN 562
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + A F M++ G+TPD+ +Y M+ G +E + L DM +TG+ PN
Sbjct: 563 GYILRASRFFSD-MRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPN 618
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 136/311 (43%), Gaps = 44/311 (14%)
Query: 58 VITFNTLALVALNLFEEMV-NEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQ 106
V + + + + LFEE + + C PD C +I++GL + M+ +
Sbjct: 134 VFSLLIMEFLEMGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISR 193
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY----------NTLMDG 156
G+ PDV V+ K G + LL+ M + PN Y N + +
Sbjct: 194 GLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEA 253
Query: 157 FAWWSKGCRHDV----YSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--- 209
+ +H V Y+Y+ +I+GYCK NV A L +E+L + + + TL
Sbjct: 254 EKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDG 313
Query: 210 ---------------FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLT 254
M V P+ +VY I G K+G +LEA+ + S + +
Sbjct: 314 FCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373
Query: 255 IETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
+ T LI+GLC ++ A +F M+N + P TYN +IHG+CKE ++A L
Sbjct: 374 VFTYTILINGLCIEDQVAEANRLFQK-MKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432
Query: 315 LDMEETGLEPN 325
+M +G+EPN
Sbjct: 433 SEMTASGVEPN 443
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 51/315 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICK 84
T+ +++KG+C+ G + A + K++ C PNV+ + TL L + FG
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ-----NSRFG---- 469
Query: 85 PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVN 144
D + M +QG+ PD+ N + LSK +M+EA L M++ +
Sbjct: 470 ----------DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519
Query: 145 PNTCTYNTLMDGFAWWSKGCRHDVYSYNI--------------LINGYCKDRNVEDAVSL 190
PN TY + G+ S+ D Y + LIN YCK V +A S
Sbjct: 520 PNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSA 579
Query: 191 CREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
R M+ +GI DA TY L ++GL+KN V +A ++F +
Sbjct: 580 YRSMVDQGILGDAKTYTVL-----------------MNGLFKNDKVDDAEEIFREMRGKG 622
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
+ + LI+G K+G ++ A IF +++ GLTP+V+ YN+++ GFC+ G+ +KA
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 311 NGLLLDMEETGLEPN 325
LL +M GL PN
Sbjct: 682 KELLDEMSVKGLHPN 696
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/409 (25%), Positives = 171/409 (41%), Gaps = 87/409 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G G + ++ ++ S PN+V + +LIK R +A R+ K++ P++ +
Sbjct: 431 GDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCY 490
Query: 62 NTLAL---------VALNLFEEMV---------------------NEFGVICK------- 84
N+L + A + EMV +EF K
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 85 ----PDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLSKDGKMEE 130
P+ V CT +I+ CK G M+DQG+ D T V+ + L K+ K+++
Sbjct: 551 CGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 131 ANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILIN 176
A + M + + P+ +Y L++GF+ +G +V YN+L+
Sbjct: 611 AEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
G+C+ +E A L EM +G+ +A TY T+ M + + P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
DS VYTT +DG + V A+ +F C + N LI+ + K G+ ++ ++
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFKFGKTELKTEVL 789
Query: 279 HMLMQ---NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
+ LM + P+ VTYNIMI CKEG + A L M+ L P
Sbjct: 790 NRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 163/414 (39%), Gaps = 126/414 (30%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--------ALVALNL 71
P++ +NSLI GL R+ EA ++ PN T+ + +
Sbjct: 484 APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK 543
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
+ + + E GV+ P+ V CT +I+ CK G M+DQG+ D T V+ +
Sbjct: 544 YVKEMRECGVL--PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNG 601
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHD 167
L K+ K+++A + M + + P+ +Y L++GF+ +G +
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPN 661
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF----------------- 210
V YN+L+ G+C+ +E A L EM +G+ +A TY T+
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721
Query: 211 -MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVF--------------SAIGN-----HK 250
M + + PDS VYTT +DG + V A+ +F +A+ N K
Sbjct: 722 EMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGK 781
Query: 251 CVLTIETCNCLIDG-------------------LCKIGRLKIAWDIFHMLMQNPGLTPDV 291
L E N L+DG LCK G L+ A ++FH MQN L P V
Sbjct: 782 TELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQ-MQNANLMPTV 840
Query: 292 VTY-----------------------------------NIMIHGFCKEGQHQKA 310
+TY +++I+ F KEG KA
Sbjct: 841 ITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 62/325 (19%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVAL 69
TPN++ +N L+ G C G I +A L +++V PN +T+ T+ A
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAF 717
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM---------DQGMRPDVVTLNVMTD 120
LF+EM + G++ PD T ++DG C+ + +G N + +
Sbjct: 718 RLFDEMKLK-GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALIN 774
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCK 180
+ K GK E T N LMDG ++ G +DV +YNI+I+ CK
Sbjct: 775 WVFKFGKTE---------------LKTEVLNRLMDG-SFDRFGKPNDV-TYNIMIDYLCK 817
Query: 181 DRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDSHV 222
+ N+E A L +M + + TY +L + + PD +
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIM 877
Query: 223 YTTYIDGLYKNGFVLEAM----KVFSAIG-NHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
Y+ I+ K G +A+ ++F+ + C L+I TC L+ G K+G +++A +
Sbjct: 878 YSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFC 302
+++ + PD T +I+ C
Sbjct: 938 MENMVRLQYI-PDSATVIELINESC 961
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 117/305 (38%), Gaps = 69/305 (22%)
Query: 89 TCTNIIDGLCK-DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT 147
T T +DG K M+ +G+ P T +V+ D L K ++E+A LL M V+ +
Sbjct: 253 TATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDN 312
Query: 148 CTYNTLMDGF-----AWWSKGCRHDVYSYNI----------------------------- 173
TY+ L+DG A +KG H++ S+ I
Sbjct: 313 HTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDG 372
Query: 174 ---------------LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
LI GYC+++NV L EM I TY T+
Sbjct: 373 MIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD 432
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + P+ +YTT I +N +AM+V + I N
Sbjct: 433 LDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNS 492
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET 320
LI GL K R+ A +++N GL P+ TY I G+ + + A+ + +M E
Sbjct: 493 LIIGLSKAKRMDEARSFLVEMVEN-GLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551
Query: 321 GLEPN 325
G+ PN
Sbjct: 552 GVLPN 556
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 151 NTLMDGFAW--WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+ L+ F W K + S++ L C + E A+S+ M+ A +++
Sbjct: 78 SKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFEKALSVVERMIERNWPV-AEVWSS 136
Query: 209 LFMAINNV---PPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGL 265
+ D ++ DG G++ EA+ VFS+ + V + C L+D L
Sbjct: 137 IVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDAL 196
Query: 266 CKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEE 319
+ RL + WD++ +++ + DV TY+++I C+ G Q +L E+
Sbjct: 197 LRWNRLDLFWDVYKGMVER-NVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEK 249
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 114/310 (36%), Gaps = 67/310 (21%)
Query: 68 ALNLFEEMVNEFGVICK--PDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKD 125
AL++ E M+ + + +V C+ G DG V ++ D
Sbjct: 116 ALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDG-----------VLFGILFDGYIAK 164
Query: 126 GKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSY 171
G +EEA + + ++ P L+D W + DV +Y
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224
Query: 172 NILINGYCKDRNVE---------------------DAVSLCREMLSEGIRADATTYNTLF 210
++LI +C+ NV+ A+ L M+ +G+ TY+ L
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284
Query: 211 ------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
M V D+H Y+ IDGL K A + + +H
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
+ +C I + K G ++ A +F ++ + GL P Y +I G+C+E ++
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIAS-GLIPQAQAYASLIEGYCREKNVRQGYE 403
Query: 313 LLLDMEETGL 322
LL++M++ +
Sbjct: 404 LLVEMKKRNI 413
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 161/358 (44%), Gaps = 57/358 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
++V + SLI+G C G + LF ++ P IT+NTL A +
Sbjct: 245 ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEI 304
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDN 121
FE M+ E GV +P+V T T +IDGLC G M+++ P+ VT N++ +
Sbjct: 305 FEFMI-ERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINK 361
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------------SKGCR 165
L KDG + +A ++E+M +R P+ TYN L+ G S
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421
Query: 166 HDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--------------- 210
DV SYN LI+G CK+ + A+ + ++ + D T N L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 211 ---MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCK 267
++ + + +S YT IDG K G + A + + + ++ NCL+ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 268 IGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L AW +F MQ PDVV++NIMI G K G + A LL+ M GL P+
Sbjct: 542 EGSLDQAWRLFEE-MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPD 598
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 48/341 (14%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
M + F +L +L F N+ N L+KGLC +A L +++ P+V +
Sbjct: 120 MRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFS 179
Query: 61 FNTLAL-----VALNLFEEMVNEF-GVICKPDVVTCTNIIDGLCKDGFMMDQ-------- 106
+NT+ L E+ NE G C +VT +ID CK G M +
Sbjct: 180 YNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMK 239
Query: 107 --GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW---- 160
G+ D+V + G+++ L + +++R +P TYNTL+ GF
Sbjct: 240 FMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLK 299
Query: 161 ----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF 210
+G R +VY+Y LI+G C ++A+ L M+ + +A TYN +
Sbjct: 300 EASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNII- 358
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
I+ L K+G V +A+++ + + T N L+ GLC G
Sbjct: 359 ----------------INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGD 402
Query: 271 LKIAWDIFHMLMQNPGLT-PDVVTYNIMIHGFCKEGQHQKA 310
L A + ++++++ T PDV++YN +IHG CKE + +A
Sbjct: 403 LDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQA 443
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 144/357 (40%), Gaps = 85/357 (23%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL ++ PN VT+N +I LC +G + +A + + + P+ IT
Sbjct: 330 VGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNIT 389
Query: 61 FNTL--ALVALNLFEEMVNEFGVICK------PDVVTCTNIIDGLCKDG----------F 102
+N L L A +E ++ K PDV++ +I GLCK+
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449
Query: 103 MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW-- 160
++++ D VT N++ ++ K G + +A L + + + N+ TY ++DGF
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGM 509
Query: 161 ---SKG---------CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
+KG + V+ YN L++ CK+ +++ A L EM
Sbjct: 510 LNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQR------------ 557
Query: 209 LFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
+N PD + IDG K G I++ L+ G+ +
Sbjct: 558 -----DNNFPDVVSFNIMIDGSLKAG-------------------DIKSAESLLVGMSRA 593
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G L+PD+ TY+ +I+ F K G +A M ++G EP+
Sbjct: 594 G-----------------LSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 156 GFAW------WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
GFA+ +G +VY++NIL+ G C++ AVSL REM + D +YNT+
Sbjct: 124 GFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTV 183
Query: 210 F------------MAINNVPPDSH------VYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
+ + N S + ID K G + EAM +
Sbjct: 184 IRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGL 243
Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
+ LI G C G L +F +++ G +P +TYN +I GFCK GQ ++A+
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLER-GDSPCAITYNTLIRGFCKLGQLKEAS 302
Query: 312 GLLLDMEETGLEPN 325
+ M E G+ PN
Sbjct: 303 EIFEFMIERGVRPN 316
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 74/235 (31%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL----------- 69
P+++++N+LI GLC E R+ +A ++ L + +T N L L
Sbjct: 422 PDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMEL 481
Query: 70 -------------NLFEEMVNEF----------GVICK-------PDVVTCTNIIDGLCK 99
+ + M++ F G++CK P V ++ LCK
Sbjct: 482 WKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCK 541
Query: 100 DGFMMDQGMR-----------PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTC 148
+G +DQ R PDVV+ N+M D K G ++ A LL M + ++P
Sbjct: 542 EG-SLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSP--- 597
Query: 149 TYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADA 203
D+++Y+ LIN + K +++A+S +M+ G DA
Sbjct: 598 ------------------DLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDA 634
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVAL 69
LL ++ +S P++ +N L+ LC EG + +A RLF+++ P+V++FN + +L
Sbjct: 516 LLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSL 575
Query: 70 NLFEEMVNEFGVI------CKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVV 113
+ E ++ PD+ T + +I+ K G+ M+D G PD
Sbjct: 576 KAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAH 635
Query: 114 TLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMD 155
+ + G+ ++ L++ ++ +D+ + T+MD
Sbjct: 636 ICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMD 677
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 90/392 (22%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV---------ALN 70
PN V+++ LI GLC GR+ EA L ++ C P+ T+ L A N
Sbjct: 263 APNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFN 322
Query: 71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTD 120
LF+EM+ CKP+V T T +IDGLC+DG M+ + P V+T N + +
Sbjct: 323 LFDEMIPRG---CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK--------------GCRH 166
KDG++ A LL VM +R PN T+N LM+G K G
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL----------------- 209
D+ SYN+LI+G C++ ++ A L M I D T+ +
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFL 499
Query: 210 -FMAINNVPPDSHVYTTYIDGLYKNG------FVLEAM---------------------- 240
M + D TT IDG+ K G F+LE +
Sbjct: 500 GLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559
Query: 241 -------KVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVT 293
+ I V ++ T L+DGL + G + ++ I LM+ G P+V
Sbjct: 560 CKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILE-LMKLSGCLPNVYP 618
Query: 294 YNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
Y I+I+G C+ G+ ++A LL M+++G+ PN
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPN 650
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 62/339 (18%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLF--KKLNV-FCCDPNVITFNT 63
+V R+ F M+ + +++ LC G EAA +F K L + F D ++ T
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYT-EAAEMFMSKILKIGFVLDSHIGTSLL 237
Query: 64 LALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQ 106
L AL +F+ M E V C P+ V+ + +I GLC+ G M ++
Sbjct: 238 LGFCRGLNLRDALKVFDVMSKE--VTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK 295
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRH 166
G +P T V+ L G +++A L + MI R GC+
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPR---------------------GCKP 334
Query: 167 DVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTY 226
+V++Y +LI+G C+D +E+A +CR+M+ + I TYN L
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNAL----------------- 377
Query: 227 IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
I+G K+G V+ A ++ + + C + T N L++GLC++G+ A + ++ N G
Sbjct: 378 INGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDN-G 436
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L+PD+V+YN++I G C+EG A LL M +EP+
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPD 475
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 176/399 (44%), Gaps = 84/399 (21%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G+ LL R+L + +P++V++N LI GLC EG + A +L +N F +P+ +T
Sbjct: 419 VGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLT 478
Query: 61 FNTLALVALNLF-----EEMVNEF-GVICKP----DVVTCTNIIDGLCKDG------FMM 104
F + +N F ++ + F G++ + D VT T +IDG+CK G F++
Sbjct: 479 FTAI----INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFIL 534
Query: 105 DQGMRPDVVT----LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
+ ++ ++T LNV+ D LSK K++E +L + + + P+ TY TL+DG
Sbjct: 535 ETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRS 594
Query: 161 S--------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
GC +VY Y I+ING C+ VE+A L M G+ + TY
Sbjct: 595 GDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654
Query: 207 NTLFMA-INNVPPDSHVYTTYI---------DGLYKN---GFVL---------------- 237
+ +NN D + T D +Y + GFVL
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDI 714
Query: 238 -----------EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPG 286
E + V +G C+ + C L+ LCK GR + D+ +++
Sbjct: 715 ALRETDPECINELISVVEQLGG--CISGL--CIFLVTRLCKEGRTDESNDLVQNVLERGV 770
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ +I++ +C + +H K L+ + ++G P+
Sbjct: 771 FLEKAM--DIIMESYCSKKKHTKCMELITLVLKSGFVPS 807
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/377 (28%), Positives = 172/377 (45%), Gaps = 57/377 (15%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F ++ + + P++ T+N LI GLC G + E L + P+V+T
Sbjct: 288 LGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVT 347
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------G 101
+NTL +L A L E+M N+ GV K + VT + LCK+
Sbjct: 348 YNTLIDGCFELGLSLEARKLMEQMEND-GV--KANQVTHNISLKWLCKEEKREAVTRKVK 404
Query: 102 FMMD-QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--- 157
++D G PD+VT + + K G + A ++ M Q+ + NT T NT++D
Sbjct: 405 ELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKE 464
Query: 158 -----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
+ +G D +Y LI G+ ++ VE A+ + EM I +T+
Sbjct: 465 RKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTF 524
Query: 207 NTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGN 248
N+L +A + + PD + + I G K G V +A + ++
Sbjct: 525 NSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIK 584
Query: 249 HKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQ 308
H TCN L++GLCK G + A + F+ L++ + D VTYN MI FCK+ + +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLK 642
Query: 309 KANGLLLDMEETGLEPN 325
+A LL +MEE GLEP+
Sbjct: 643 EAYDLLSEMEEKGLEPD 659
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 167/379 (44%), Gaps = 60/379 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLC---TEGRILEAARLFKKLNVFCCDPNV 58
G+ + +++ PN++T N+L+ GL + I A +F + NV
Sbjct: 145 GKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNV 204
Query: 59 ITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD---- 105
TFN L AL + E MV+EF V PD VT I+ + K G + D
Sbjct: 205 QTFNVLVNGYCLEGKLEDALGMLERMVSEFKV--NPDNVTYNTILKAMSKKGRLSDLKEL 262
Query: 106 ------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-- 157
G+ P+ VT N + K G ++EA ++E+M Q +V P+ CTYN L++G
Sbjct: 263 LLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCN 322
Query: 158 ------------AWWSKGCRHDVYSYNILINGYCKDRNVE-DAVSLCREMLSEGIRADAT 204
A S + DV +YN LI+G C + + +A L +M ++G++A+
Sbjct: 323 AGSMREGLELMDAMKSLKLQPDVVTYNTLIDG-CFELGLSLEARKLMEQMENDGVKANQV 381
Query: 205 TYN-------------------TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSA 245
T+N + ++ PD Y T I K G + A+++
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 246 IGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+G + T N ++D LCK +L A ++ + + G D VTY +I GF +E
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKR-GFIVDEVTYGTLIMGFFREE 500
Query: 306 QHQKANGLLLDMEETGLEP 324
+ +KA + +M++ + P
Sbjct: 501 KVEKALEMWDEMKKVKITP 519
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 57/342 (16%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------------VA 68
P+ F+ + EG+ A ++F+K+ PN++T NTL + A
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSA 188
Query: 69 LNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-GM----------RPDVVTLNV 117
+F++MV + GV +V T +++G C +G + D GM PD VT N
Sbjct: 189 REVFDDMV-KIGVSL--NVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNT 245
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKG 163
+ +SK G++ + LL M + + PN TYN L+ G+
Sbjct: 246 ILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTN 305
Query: 164 CRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVY 223
D+ +YNILING C ++ + + L M S ++ D TYNTL
Sbjct: 306 VLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTL-------------- 351
Query: 224 TTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQ 283
IDG ++ G LEA K+ + N T N + LCK + + L+
Sbjct: 352 ---IDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVD 408
Query: 284 NPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G +PD+VTY+ +I + K G A ++ +M + G++ N
Sbjct: 409 MHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMN 450
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 128/311 (41%), Gaps = 43/311 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G SG ++ + N +T N+++ LC E ++ EA L + + +T
Sbjct: 429 VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVT 488
Query: 61 FNTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+ TL + AL +++EM V P V T ++I GLC G
Sbjct: 489 YGTLIMGFFREEKVEKALEMWDEMKK---VKITPTVSTFNSLIGGLCHHGKTELAMEKFD 545
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG----- 156
+ + G+ PD T N + K+G++E+A I+ P+ T N L++G
Sbjct: 546 ELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG 605
Query: 157 --------FAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN- 207
F + D +YN +I+ +CKD+ +++A L EM +G+ D TYN
Sbjct: 606 MTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNS 665
Query: 208 --TLFMAINNVPPDSHVYTTYID--GLYKNGFVLEAMKVFSAIGNHKCVLTIETC--NCL 261
+L M + + + G K +E K A K L E + +
Sbjct: 666 FISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVETEKN-PATSESKEELNTEAIAYSDV 724
Query: 262 IDGLCKIGRLK 272
ID LC GRLK
Sbjct: 725 IDELCSRGRLK 735
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 164/370 (44%), Gaps = 54/370 (14%)
Query: 6 GGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA 65
G ++ GR C PN+V +N++I G C G I A +FK+L + P + TF T+
Sbjct: 224 GRKLIEGRWGKGCI-PNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMI 282
Query: 66 --------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGM--------- 108
VA + V E G+ + V NIID + G+ +D
Sbjct: 283 NGFCKEGDFVASDRLLSEVKERGL--RVSVWFLNNIIDAKYRHGYKVDPAESIGWIIAND 340
Query: 109 -RPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
+PDV T N++ + L K+GK E A L+ ++ + PN +Y L+ +
Sbjct: 341 CKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIAS 400
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF--- 210
+GC+ D+ +Y ILI+G +++DAV++ +++ G+ DA YN L
Sbjct: 401 KLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGL 460
Query: 211 ---------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTI 255
M N+ PD++VY T IDG ++G EA KVFS + +
Sbjct: 461 CKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDV 520
Query: 256 ETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL 315
N +I G C+ G L A + M L PD TY+ +I G+ K+ A +
Sbjct: 521 VHHNAMIKGFCRSGMLDEALACMNR-MNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFR 579
Query: 316 DMEETGLEPN 325
ME+ +PN
Sbjct: 580 YMEKNKCKPN 589
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 145/329 (44%), Gaps = 54/329 (16%)
Query: 11 LGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---- 66
+G I+ + P++ T+N LI LC EG+ A + + PN +++ L
Sbjct: 333 IGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCK 392
Query: 67 -----VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM----------MDQGMRPD 111
+A L +M E G CKPD+VT +I GL G M +D+G+ PD
Sbjct: 393 SKEYDIASKLLLQMA-ERG--CKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPD 449
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----------- 160
N++ L K G+ A L M+ R++ P+ Y TL+DGF
Sbjct: 450 AAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFS 509
Query: 161 ---SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVP 217
KG + DV +N +I G+C+ +++A++ M E ++
Sbjct: 510 LSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE-----------------HLV 552
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD Y+T IDG K + A+K+F + +KC + T LI+G C G K+A +
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQ 306
F MQ L P+VVTY +I KE
Sbjct: 613 FKE-MQLRDLVPNVVTYTTLIRSLAKESS 640
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 124/286 (43%), Gaps = 52/286 (18%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNV 117
A+ +++ +V + + PDV+ C +++ L K M D+G D + +
Sbjct: 153 AVEIYDYVVELYDSV--PDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCI 210
Query: 118 MTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILING 177
+ + +GK+E L+E W KGC ++ YN +I G
Sbjct: 211 LVKGMCNEGKVEVGRKLIE---------------------GRWGKGCIPNIVFYNTIIGG 249
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTL---------FMAINNVPPDSH------- 221
YCK ++E+A + +E+ +G T+ T+ F+A + + +
Sbjct: 250 YCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVS 309
Query: 222 --VYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
ID Y++G+ ++ + I + C + T N LI+ LCK G+ ++A
Sbjct: 310 VWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLD 369
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ GL P+ ++Y +I +CK ++ A+ LLL M E G +P+
Sbjct: 370 EASKK-GLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPD 414
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 62/312 (19%)
Query: 22 NMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNLF 72
++V N++IKG C G + EA ++N P+ T++T+ A+ +F
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIF 578
Query: 73 EEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
M CKP+VVT T++I+G C G D KM E
Sbjct: 579 RYMEKN---KCKPNVVTYTSLINGFCCQG-----------------------DFKMAEET 612
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCR 192
+ M RD+ PN TY TL+ A S VY + +++ C V + V+
Sbjct: 613 --FKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKC----VPNEVTF-- 664
Query: 193 EMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCV 252
L +G T+ L + S +++ + + +G+ A SA+
Sbjct: 665 NCLLQGF-VKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSAL------ 717
Query: 253 LTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
C LC G +K A +F M G +PD V++ ++HGFC G ++
Sbjct: 718 ----VC------LCVHGMVKTAC-MFQDKMVKKGFSPDPVSFAAILHGFCVVGNSKQWRN 766
Query: 313 L-LLDMEETGLE 323
+ ++ E GLE
Sbjct: 767 MDFCNLGEKGLE 778
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 158/352 (44%), Gaps = 58/352 (16%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---- 65
L ++ +TP+ +FNS++ +C G++ A + + F C+P+VI++N+L
Sbjct: 43 FLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHC 102
Query: 66 -----LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK----DGFMMDQGM-----RPD 111
A + E + G ICKPD+V+ ++ +G K D + G+ P+
Sbjct: 103 RNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPN 162
Query: 112 VVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSY 171
VVT + D K G+++ A M + ++PN T+ L+DG
Sbjct: 163 VVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDG--------------- 207
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
YCK ++E AVSL +EM + + TY L M
Sbjct: 208 ------YCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVE 261
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ V P+S VYTT IDG ++ G AMK + + N L I +I GLC G+LK
Sbjct: 262 DRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKE 321
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A +I M+ L PD+V + M++ + K G+ + A + + E G EP+
Sbjct: 322 ATEIVED-MEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPD 372
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 176/403 (43%), Gaps = 100/403 (24%)
Query: 8 FVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA-- 65
FV +G +++ C +PN+VT+++ I C G + A + F + PNV+TF L
Sbjct: 149 FVYMG-VMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDG 207
Query: 66 -------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCK------------------- 99
VA++L++EM V +VVT T +IDG CK
Sbjct: 208 YCKAGDLEVAVSLYKEMRR---VRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRV 264
Query: 100 -----------DGF---------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANC 133
DGF M++QGMR D+ V+ L +GK++EA
Sbjct: 265 EPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATE 324
Query: 134 LLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILINGYC 179
++E M + D+ P+ + T+M+ + +G DV + + +I+G
Sbjct: 325 IVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384
Query: 180 KDRNVEDAV------------------SLCREMLSEGIRADATTYNTLFMAINN--VPPD 219
K+ + +A+ +LC+E D LF I+ + PD
Sbjct: 385 KNGQLHEAIVYFCIEKANDVMYTVLIDALCKE-------GDFIEVERLFSKISEAGLVPD 437
Query: 220 SHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFH 279
+YT++I GL K G +++A K+ + + +L + LI GL G + A +F
Sbjct: 438 KFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFD 497
Query: 280 MLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
++ N G++PD ++++I + KEG A+ LLLDM+ GL
Sbjct: 498 EML-NSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 56/355 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNV---FCCDPNVITFNTL--ALVALNLFEEM 75
P+++++NSLI G C G I A+ + + L F C P++++FN+L + + +E+
Sbjct: 89 PDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEV 148
Query: 76 VNEFGVI---CKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNL 122
GV+ C P+VVT + ID CK G M + P+VVT + D
Sbjct: 149 FVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGY 208
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCR-HDVYS----------- 170
K G +E A L + M + ++ N TY L+DGF + R ++YS
Sbjct: 209 CKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNS 268
Query: 171 --YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------ 210
Y +I+G+ + + ++A+ +ML++G+R D T Y +
Sbjct: 269 LVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVED 328
Query: 211 MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGR 270
M +++ PD ++TT ++ +K+G + A+ ++ + + + +IDG+ K G+
Sbjct: 329 MEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQ 388
Query: 271 LKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
L A F + N V Y ++I CKEG + L + E GL P+
Sbjct: 389 LHEAIVYFCIEKAND------VMYTVLIDALCKEGDFIEVERLFSKISEAGLVPD 437
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 153/341 (44%), Gaps = 53/341 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G S + I P +V+FN+LI G C G + E RL ++ P+V T+
Sbjct: 254 GNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTY 313
Query: 62 NTL--ALVALNLFEEMVNEFGVICK----PDVVTCTNIIDGLCKDG----------FMMD 105
+ L AL N + F +CK P+ V T +I G ++G M+
Sbjct: 314 SALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLS 373
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW----- 160
+G++PD+V N + + K+G + A +++ MI+R + P+ TY TL+DGF
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVET 433
Query: 161 ---------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
G D ++ L+ G CK+ V DA REML GI+
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK----------- 482
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
PD YT +D K G K+ + + V ++ T N L++GLCK+G++
Sbjct: 483 ------PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANG 312
K A D+ M N G+ PD +TYN ++ EG H+ AN
Sbjct: 537 KNA-DMLLDAMLNIGVVPDDITYNTLL-----EGHHRHANS 571
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 156/354 (44%), Gaps = 72/354 (20%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFE 73
IL + F N+ FN L+ C EG I +A ++F ++ P V++FNTL
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTL--------- 281
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCK-----DGFMMDQGM-----RPDVVTLNVMTDNLS 123
I+G CK +GF + M RPDV T + + + L
Sbjct: 282 --------------------INGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALC 321
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVY 169
K+ KM+ A+ L + M +R + PN + TL+ G + SKG + D+
Sbjct: 322 KENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIV 381
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------M 211
YN L+NG+CK+ ++ A ++ M+ G+R D TY TL M
Sbjct: 382 LYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEM 441
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRL 271
N + D ++ + G+ K G V++A + + T ++D CK G
Sbjct: 442 DQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDA 501
Query: 272 KIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
+ + + MQ+ G P VVTYN++++G CK GQ + A+ LL M G+ P+
Sbjct: 502 QTGFKLLKE-MQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPD 554
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 3/183 (1%)
Query: 144 NPNTCTYNTLMDGFAWWSK--GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRA 201
NP + ++ F + S G R V +Y +L +A SL ++S +
Sbjct: 92 NPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKN 151
Query: 202 DATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCL 261
A++ + + P + + GF+ +A++ F H+ + I C L
Sbjct: 152 SASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNL 211
Query: 262 IDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG 321
+D + K+ W F+M + + G +V +NI+++ FCKEG A + ++ +
Sbjct: 212 LDRMMKLNPTGTIWG-FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRS 270
Query: 322 LEP 324
L+P
Sbjct: 271 LQP 273
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 56/340 (16%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL------ALVALNLFE 73
TP+++T+ ++I G C G ++EA +LF ++ +P+ +TF L A + F
Sbjct: 383 TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFR 442
Query: 74 EMVNEFGVICKPDVVTCTNIIDGLCKDG----------FMMDQGMRPDVVTLNVMTDNLS 123
+ C P+VVT T +IDGLCK+G M G++P++ T N + + L
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 124 KDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVY 169
K G +EEA L+ +N +T TY TLMD + KG + +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 170 SYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDG 229
++N+L+NG+C +ED L ML++GI +ATT+N+L
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV------------------- 603
Query: 230 LYKNGFVLEAMKVFSAIGNHKCVLTI----ETCNCLIDGLCKIGRLKIAWDIFHMLMQNP 285
K + +K +AI C + +T L+ G CK +K AW +F M+
Sbjct: 604 --KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE-MKGK 660
Query: 286 GLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
G + V TY+++I GF K + +A + M GL +
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 60/361 (16%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+GR LL + + +TP+++++++++ G C G + + +L + + PN
Sbjct: 259 LGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 318
Query: 61 FNTLALV---------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG---------- 101
+ ++ + A F EM+ + G++ PD V T +IDG CK G
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQ-GIL--PDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 102 FMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---- 157
M + + PDV+T + + G M EA L M + + P++ T+ L++G+
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 158 ----------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
GC +V +Y LI+G CK+ +++ A L EM G++ + TYN
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 208 TLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKV---FSAIGNHKCVLTIETCNCLIDG 264
++ ++GL K+G + EA+K+ F A G + +T T L+D
Sbjct: 496 SI-----------------VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT---LMDA 535
Query: 265 LCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEP 324
CK G + A +I ++ GL P +VT+N++++GFC G + LL M G+ P
Sbjct: 536 YCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594
Query: 325 N 325
N
Sbjct: 595 N 595
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 61/324 (18%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL---------ALVALNL 71
P+ V + +LI G C G I A++ F +++ P+V+T+ + + A L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ----------GMRPDVVTLNVMTDN 121
F EM F +PD VT T +I+G CK G M D G P+VVT + D
Sbjct: 409 FHEM---FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
L K+G ++ AN LL M W G + ++++YN ++NG CK
Sbjct: 466 LCKEGDLDSANELLHEM---------------------WKIGLQPNIFTYNSIVNGLCKS 504
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
N+E+AV L E + G+ AD TY TL +D K+G + +A +
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTL-----------------MDAYCKSGEMDKAQE 547
Query: 242 VFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGF 301
+ + TI T N L++G C G L+ + + ++ G+ P+ T+N ++ +
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQY 606
Query: 302 CKEGQHQKANGLLLDMEETGLEPN 325
C + A + DM G+ P+
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPD 630
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 47/275 (17%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + ++ + +PN+VT+ +LI GLC EG + A L ++ PN+ T+
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494
Query: 62 NTL--ALVALNLFEE---MVNEFGVI-CKPDVVTCTNIIDGLCKDG----------FMMD 105
N++ L EE +V EF D VT T ++D CK G M+
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 106 QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF-------- 157
+G++P +VT NV+ + G +E+ LL M+ + + PN T+N+L+ +
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 614
Query: 158 --AWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM 211
A + S+G D +Y L+ G+CK RN+++A L +EM +G +TY+ L
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL-- 672
Query: 212 AINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAI 246
I G K LEA +VF +
Sbjct: 673 ---------------IKGFLKRKKFLEAREVFDQM 692
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 132/321 (41%), Gaps = 87/321 (27%)
Query: 68 ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM-----------DQGMRPDVVTLN 116
A +FE+M+N +G++ D +C + L KD + + G+ +V + N
Sbjct: 194 ARRVFEKMLN-YGLVLSVD--SCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYN 250
Query: 117 VMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILIN 176
++ + + G+++EA+ LL +M + P DV SY+ ++N
Sbjct: 251 IVIHFVCQLGRIKEAHHLLLLMELKGYTP---------------------DVISYSTVVN 289
Query: 177 GYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPP 218
GYC+ ++ L M +G++ ++ Y ++ M + P
Sbjct: 290 GYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILP 349
Query: 219 DSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIF 278
D+ VYTT IDG K G + A K F + + + T +I G C+IG + A +F
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 279 HML----------------------------------MQNPGLTPDVVTYNIMIHGFCKE 304
H + M G +P+VVTY +I G CKE
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Query: 305 GQHQKANGLLLDMEETGLEPN 325
G AN LL +M + GL+PN
Sbjct: 470 GDLDSANELLHEMWKIGLQPN 490
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 43/219 (19%)
Query: 148 CTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATT-- 205
C Y ++D F W ++ S I+I+ ++++ A SL E + + T
Sbjct: 99 CDYRLVLDFFDWARSRRDSNLESLCIVIHLAVASKDLKVAQSLISSFW-ERPKLNVTDSF 157
Query: 206 ---YNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC-- 260
++ L + D V+ + L G + EA +VF + N+ VL++++CN
Sbjct: 158 VQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYL 217
Query: 261 ----------------------------------LIDGLCKIGRLKIAWDIFHMLMQNPG 286
+I +C++GR+K A + +LM+ G
Sbjct: 218 TRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLL-LLMELKG 276
Query: 287 LTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TPDV++Y+ +++G+C+ G+ K L+ M+ GL+PN
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPN 315
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 161/374 (43%), Gaps = 55/374 (14%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G F + R+ P+++TFN+L+KGL G + +A + K++ P+ TF
Sbjct: 263 GNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTF 322
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM--------- 103
+ L A AL ++E V+ GV K + TC+ +++ LCK+G +
Sbjct: 323 SILFDGYSSNEKAEAALGVYETAVDS-GV--KMNAYTCSILLNALCKEGKIEKAEEILGR 379
Query: 104 -MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWS- 161
M +G+ P+ V N M D + G + A +E M ++ + P+ YN L+ F
Sbjct: 380 EMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGE 439
Query: 162 -------------KGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNT 208
KG V +YNILI GY + + + +EM G + +Y T
Sbjct: 440 MENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGT 499
Query: 209 LF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHK 250
L M V P +Y IDG G + +A + +
Sbjct: 500 LINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKG 559
Query: 251 CVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKA 310
L + T N LIDGL G+L A D+ + + GL PDV TYN +I G+ G Q+
Sbjct: 560 IELNLVTYNTLIDGLSMTGKLSEAEDLL-LEISRKGLKPDVFTYNSLISGYGFAGNVQRC 618
Query: 311 NGLLLDMEETGLEP 324
L +M+ +G++P
Sbjct: 619 IALYEEMKRSGIKP 632
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 55/367 (14%)
Query: 10 LLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL----- 64
L +L P+++T+N+LI G C G ++ ++ +++ +P++ITFNTL
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Query: 65 --ALV--ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKD----------GFMMDQGMRP 110
+V A N+ +EM + G + PD T + + DG + +D G++
Sbjct: 296 KAGMVEDAENVLKEM-KDLGFV--PDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352
Query: 111 DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF------------- 157
+ T +++ + L K+GK+E+A +L + + + PN YNT++DG+
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412
Query: 158 -AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------ 210
A +G + D +YN LI +C+ +E+A +M +G+ TYN L
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472
Query: 211 ------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETC 258
M N P+ Y T I+ L K +LEA V + + +
Sbjct: 473 YEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIY 532
Query: 259 NCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
N LIDG C G+++ A+ F M G+ ++VTYN +I G G+ +A LLL++
Sbjct: 533 NMLIDGCCSKGKIEDAFR-FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
Query: 319 ETGLEPN 325
GL+P+
Sbjct: 592 RKGLKPD 598
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 61/354 (17%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
P+ + +N LI+ C G + A + K+ + P+V T+N L ++
Sbjct: 422 PDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDI 481
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM----------DQGMRPDVVTLNVMTDN 121
+EM + G + P+VV+ +I+ LCK ++ D+G+ P V N++ D
Sbjct: 482 LKEMEDN-GTM--PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDG 538
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW--------------WSKGCRHD 167
GK+E+A + M+++ + N TYNTL+DG + KG + D
Sbjct: 539 CCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPD 598
Query: 168 VYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL--------------FMAI 213
V++YN LI+GY NV+ ++L EM GI+ TY+ L
Sbjct: 599 VFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGE 658
Query: 214 NNVPPDSHVYTTY-----IDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKI 268
++ PD VY + G + F L+ + +IG K T N LI G K+
Sbjct: 659 MSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKT-----TYNSLILGQLKV 713
Query: 269 GRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGL 322
G+L + M + P+ TYNI++ G C+ + A +M+E G
Sbjct: 714 GKLCEVRSLIDE-MNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGF 766
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 150/345 (43%), Gaps = 54/345 (15%)
Query: 14 ILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL------- 66
IL S F P+ + I+ + + LF ++ P+V +N L
Sbjct: 170 ILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKR 229
Query: 67 --VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDG-----FMMDQGMR-----PDVVT 114
A LF+EM+ + P ++T +IDG CK G F + + M+ P ++T
Sbjct: 230 MNDAEQLFDEMLARRLL---PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLIT 286
Query: 115 LNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSK------------ 162
N + L K G +E+A +L+ M P+ T++ L DG++ K
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAV 346
Query: 163 --GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
G + + Y+ +IL+N CK+ +E A + +++G+ P+
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGL-----------------VPNE 389
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+Y T IDG + G ++ A A+ NCLI C++G ++ A +
Sbjct: 390 VIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNK 449
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M+ G++P V TYNI+I G+ ++ + K +L +ME+ G PN
Sbjct: 450 -MKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPN 493
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 140/328 (42%), Gaps = 49/328 (14%)
Query: 29 LIKGLCTEGRIL-EAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVNEFGVICKP 85
L+ L E +++ EAA LF L P+ + L LV F +N F I +
Sbjct: 114 LLSVLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILES 173
Query: 86 D--------------VVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEA 131
D V +++ GL M + P V NV+ D L K +M +A
Sbjct: 174 DFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDA 233
Query: 132 NCLLEVMIQRDVNPNTCTYNTLMDGF--------------AWWSKGCRHDVYSYNILING 177
L + M+ R + P+ TYNTL+DG+ + + ++N L+ G
Sbjct: 234 EQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKG 293
Query: 178 YCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVL 237
K VEDA ++ +EM G DA T++ LF DG N
Sbjct: 294 LFKAGMVEDAENVLKEMKDLGFVPDAFTFSILF-----------------DGYSSNEKAE 336
Query: 238 EAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIM 297
A+ V+ + + TC+ L++ LCK G+++ A +I M GL P+ V YN M
Sbjct: 337 AALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVIYNTM 395
Query: 298 IHGFCKEGQHQKANGLLLDMEETGLEPN 325
I G+C++G A + ME+ G++P+
Sbjct: 396 IDGYCRKGDLVGARMKIEAMEKQGMKPD 423
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 142/326 (43%), Gaps = 50/326 (15%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA---------LVALNL 71
PN+V++ +LI LC ++LEA + + + P V +N L A
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QGMRPDVVTLNVMTDN 121
+EM+ + G+ + ++VT +IDGL G + + +G++PDV T N +
Sbjct: 552 SKEMLKK-GI--ELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISG 608
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM-----DGFAWWSK-----GCRHDVYSY 171
G ++ L E M + + P TY+ L+ +G + + D+ Y
Sbjct: 609 YGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVY 668
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLY 231
N +++ Y ++E A +L ++M+ + I D TTYN+L + G
Sbjct: 669 NGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLIL-----------------GQL 711
Query: 232 KNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDV 291
K G + E + + + +T N ++ G C++ A+ +++ MQ G DV
Sbjct: 712 KVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAY-VWYREMQEKGFLLDV 770
Query: 292 VTYNIMIHGFCKEGQHQKANGLLLDM 317
N ++ G +E + ++A ++ +M
Sbjct: 771 CIGNELVSGLKEEWRSKEAEIVISEM 796
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ F +L N+VT+N+LI GL G++ EA L +++ P+V T+
Sbjct: 543 GKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTY 602
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMM------DQ 106
N+L + L+EEM G+ KP + T +I K+G + +
Sbjct: 603 NSLISGYGFAGNVQRCIALYEEM-KRSGI--KPTLKTYHLLISLCTKEGIELTERLFGEM 659
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGC-- 164
++PD++ N + + G ME+A L + MI++ + + TYN+L+ G K C
Sbjct: 660 SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEV 719
Query: 165 ------------RHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
+ +YNI++ G+C+ ++ A REM +G D N L
Sbjct: 720 RSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNEL 776
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 46/350 (13%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMV 76
F PN+ T+N L+K LC ++ A +L +++ C P+ +++ T+ ++ + L +E
Sbjct: 177 FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG- 235
Query: 77 NEFGVICKPDVVTCTNIIDGLCKD-----GF-----MMDQGMRPDVVTLNVMTDNLSKDG 126
E +P V +I+GLCK+ F M+++G+ P+V++ + + + L G
Sbjct: 236 RELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSG 295
Query: 127 KMEEANCLLEVMIQRDVNPNTCTYNTLM----------DGFAWWSK-----GCRHDVYSY 171
++E A L M++R +PN T ++L+ D W++ G + +V +Y
Sbjct: 296 QIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAY 355
Query: 172 NILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAI 213
N L+ G+C N+ AVS+ M G + TY +L M
Sbjct: 356 NTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT 415
Query: 214 NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKI 273
+ P+ VYT ++ L ++ EA + + C ++ T N I GLC GRL
Sbjct: 416 SGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDW 475
Query: 274 AWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLE 323
A +F + Q P++VTYN ++ G K + ++A GL ++ G+E
Sbjct: 476 AEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 148/358 (41%), Gaps = 51/358 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL 66
G V GR L F P + +N+LI GLC E A L +++ PNVI+++TL
Sbjct: 230 GLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLIN 289
Query: 67 VALN------LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ-----------GMR 109
V N F + C P++ T ++++ G G D G++
Sbjct: 290 VLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQ 349
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------W 159
P+VV N + G + +A + M + +PN TY +L++GFA
Sbjct: 350 PNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYI 409
Query: 160 WSK----GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI-- 213
W+K GC +V Y ++ C+ ++A SL M E T+N +
Sbjct: 410 WNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCD 469
Query: 214 -----------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIE 256
+ PP+ Y +DGL K + EA + I +
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSS 529
Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLL 314
T N L+ G C G IA + +M + G +PD +T N++I +CK+G+ ++A +L
Sbjct: 530 TYNTLLHGSCNAGLPGIALQLVGKMMVD-GKSPDEITMNMIILAYCKQGKAERAAQML 586
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 155/360 (43%), Gaps = 56/360 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVIT 60
G+ F L ++L PN+ T +SL+KG G +A L+ ++ F PNV+
Sbjct: 295 GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVA 354
Query: 61 FNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF--------- 102
+NTL + A+++F M E G C P++ T ++I+G K G
Sbjct: 355 YNTLVQGFCSHGNIVKAVSVFSHM-EEIG--CSPNIRTYGSLINGFAKRGSLDGAVYIWN 411
Query: 103 -MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA--- 158
M+ G P+VV M + L + K +EA L+E+M + + P+ T+N + G
Sbjct: 412 KMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAG 471
Query: 159 ---WWSK---------GCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTY 206
W K C ++ +YN L++G K +E+A L RE+ G+ ++TY
Sbjct: 472 RLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTY 531
Query: 207 NTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLC 266
NTL N GL G L+ + G +T+ N +I C
Sbjct: 532 NTLLHGSCNA------------GL--PGIALQLVGKMMVDGKSPDEITM---NMIILAYC 574
Query: 267 KIGRLKIAWDIFHMLM-QNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
K G+ + A + ++ PDV++Y +I G C+ + LL M G+ P+
Sbjct: 575 KQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPS 634
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 145/335 (43%), Gaps = 48/335 (14%)
Query: 19 FTPNMVTFNSLIKGLCTEGRILEAARLFK--KLNVFCCDPN----VITFNT---LALVAL 69
F +TF +I+ L +G++ L + KL F C + VI+ LA A+
Sbjct: 72 FKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAV 131
Query: 70 NLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMT 119
+F + EFG C P V +++D L + M G P+V T NV+
Sbjct: 132 EMFYR-IKEFG--CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLL 188
Query: 120 DNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------AWWSKGCRHDVYS 170
L K+ K++ A LL M + P+ +Y T++ ++ V
Sbjct: 189 KALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSV 248
Query: 171 YNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGL 230
YN LING CK+ + + A L REM+ +GI + +Y+TL I+ L
Sbjct: 249 YNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTL-----------------INVL 291
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
+G + A + + C I T + L+ G G A D+++ +++ GL P+
Sbjct: 292 CNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPN 351
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
VV YN ++ GFC G KA + MEE G PN
Sbjct: 352 VVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN 386
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 103/258 (39%), Gaps = 68/258 (26%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL--ALVALNLFEEMVN 77
+PN+ T+ SLI G G + A ++ K+ C PNV+ + + AL + F+E +
Sbjct: 384 SPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443
Query: 78 EFGVI----CKPDVVTCTNIIDGLCKDGFM---------MDQGMR--PDVVTLNVMTDNL 122
++ C P V T I GLC G + M+Q R P++VT N + D L
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGL 503
Query: 123 SKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDG-------------------------- 156
+K ++EEA L + R V ++ TYNTL+ G
Sbjct: 504 AKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDE 563
Query: 157 -------FAWWSKG------------------CRHDVYSYNILINGYCKDRNVEDAVSLC 191
A+ +G R DV SY +I G C+ ED V L
Sbjct: 564 ITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILL 623
Query: 192 REMLSEGIRADATTYNTL 209
M+S GI T++ L
Sbjct: 624 ERMISAGIVPSIATWSVL 641
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 54/192 (28%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKL-NVFCCDPNVITFNTL--ALVALNLFEE-- 74
P++ TFN+ IKGLC GR+ A ++F+++ C PN++T+N L L N EE
Sbjct: 454 APSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAY 513
Query: 75 ------------------------------------MVNEFGVICK-PDVVTCTNIIDGL 97
+V + V K PD +T II
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Query: 98 CKDG------FMMD------QGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNP 145
CK G M+D + RPDV++ + L + E+ LLE MI + P
Sbjct: 574 CKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVP 633
Query: 146 NTCTYNTLMDGF 157
+ T++ L++ F
Sbjct: 634 SIATWSVLINCF 645
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 20 TPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF 79
+P++ F + I C G++ EA +LF K+ PNV+TFNT+ ++
Sbjct: 270 SPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTV-----------IDGL 318
Query: 80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMI 139
G+ C + M+++GM P ++T +++ L++ ++ +A +L+ M
Sbjct: 319 GM--------CGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT 370
Query: 140 QRDVNPNTCTYNTLMDGFA--------------WWSKGCRHDVYSYNILINGYCKDRNVE 185
++ PN YN L+D F SKG +YN LI GYCK+ +
Sbjct: 371 KKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQAD 430
Query: 186 DAVSLCREMLSEGIRADATTYNTLF------------------MAINNVPPDSHVYTTYI 227
+A L +EMLS G + ++ ++ M + N+ P + TT I
Sbjct: 431 NAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLI 490
Query: 228 DGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGL 287
GL K+G +A++++ N V+ T N L+ GLC+ G+L A+ I ++ G
Sbjct: 491 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGC 549
Query: 288 TPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
D V+YN +I G C + + +A L +M + GL+P+
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPD 587
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 86/408 (21%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ L ++ + PN+VTFN++I GL GR EA +K+ +P +IT+
Sbjct: 287 GKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITY 346
Query: 62 NTLALVALNLFEEMVNEFGVICK-------PDVVTCTNIIDGLCKDG----------FMM 104
+ L + L + + + + V+ + P+V+ N+ID + G M+
Sbjct: 347 SIL-VKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405
Query: 105 DQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ------------------------ 140
+G+ T N + K+G+ + A LL+ M+
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465
Query: 141 -----------RDVNPNTCTYNTLMDG--------------FAWWSKGCRHDVYSYNILI 175
R+++P TL+ G F + +KG D + N L+
Sbjct: 466 SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALL 525
Query: 176 NGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF------------------MAINNVP 217
+G C+ +++A + +E+L G D +YNTL M +
Sbjct: 526 HGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLK 585
Query: 218 PDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDI 277
PD++ Y+ I GL+ V EA++ + + + + T + +IDG CK R + +
Sbjct: 586 PDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEF 645
Query: 278 FHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
F +M + + P+ V YN +I +C+ G+ A L DM+ G+ PN
Sbjct: 646 FDEMM-SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 159/376 (42%), Gaps = 57/376 (15%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+A LL +L F N +F S+I LC+ A R ++ + P
Sbjct: 427 GQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLL 486
Query: 62 NTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRP-- 110
TL AL L+ + +N+ V+ D T ++ GLC+ G +D+ R
Sbjct: 487 TTLISGLCKHGKHSKALELWFQFLNKGFVV---DTRTSNALLHGLCEAG-KLDEAFRIQK 542
Query: 111 ---------DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLM------- 154
D V+ N + K++EA L+ M++R + P+ TY+ L+
Sbjct: 543 EILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMN 602
Query: 155 ---DGFAWW----SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYN 207
+ +W G DVY+Y+++I+G CK E+ EM+S+ ++ + YN
Sbjct: 603 KVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 662
Query: 208 TLFMAI------------------NNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNH 249
L A + P+S YT+ I G+ V EA +F +
Sbjct: 663 HLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME 722
Query: 250 KCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQK 309
+ LIDG K+G++ + + M + + P+ +TY +MI G+ ++G +
Sbjct: 723 GLEPNVFHYTALIDGYGKLGQM-VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTE 781
Query: 310 ANGLLLDMEETGLEPN 325
A+ LL +M E G+ P+
Sbjct: 782 ASRLLNEMREKGIVPD 797
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 143/335 (42%), Gaps = 56/335 (16%)
Query: 25 TFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLA--LVALNLFEEMVNEFGVI 82
T+N+LIKG C G+ A RL K++ + N +F ++ L + +F+ + G +
Sbjct: 415 TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEM 474
Query: 83 C----KPDVVTCTNIIDGLCKDGF----------MMDQGMRPDVVTLNVMTDNLSKDGKM 128
P T +I GLCK G +++G D T N + L + GK+
Sbjct: 475 LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKL 534
Query: 129 EEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAV 188
+EA IQ+++ +GC D SYN LI+G C + +++A
Sbjct: 535 DEA-----FRIQKEI----------------LGRGCVMDRVSYNTLISGCCGKKKLDEAF 573
Query: 189 SLCREMLSEGIRADATTYNTLFMAI------------------NNVPPDSHVYTTYIDGL 230
EM+ G++ D TY+ L + N + PD + Y+ IDG
Sbjct: 574 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 633
Query: 231 YKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPD 290
K E + F + + N LI C+ GRL +A ++ M++ G++P+
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL-REDMKHKGISPN 692
Query: 291 VVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
TY +I G + ++A L +M GLEPN
Sbjct: 693 SATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPN 727
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 70/345 (20%)
Query: 2 GRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITF 61
G+ S L + L F + T N+L+ GLC G++ EA R+ K++ C + +++
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 556
Query: 62 NTLAL---------VALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQ------ 106
NTL A +EMV G+ KPD T + +I GL F M++
Sbjct: 557 NTLISGCCGKKKLDEAFMFLDEMVKR-GL--KPDNYTYSILICGL----FNMNKVEEAIQ 609
Query: 107 --------GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
GM PDV T +VM D K + EE + M+ ++V PNT YN L
Sbjct: 610 FWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL----- 664
Query: 159 WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLF-------- 210
I YC+ + A+ L +M +GI ++ TY +L
Sbjct: 665 ----------------IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 708
Query: 211 ----------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNC 260
M + + P+ YT IDG K G +++ + + + T
Sbjct: 709 VEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 768
Query: 261 LIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEG 305
+I G + G + A + + M+ G+ PD +TY I+G+ K+G
Sbjct: 769 MIGGYARDGNVTEASRLLNE-MREKGIVPDSITYKEFIYGYLKQG 812
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 60/240 (25%)
Query: 21 PNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLAL---------VALNL 71
P++ T++ +I G C R E F ++ PN + +N L +AL L
Sbjct: 621 PDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALEL 680
Query: 72 FEEMVNEFGVICKPDVVTCTNIIDGL--------CKDGF--MMDQGMRPDVVTLNVMTDN 121
E+M ++ G+ P+ T T++I G+ K F M +G+ P+V + D
Sbjct: 681 REDMKHK-GI--SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737
Query: 122 LSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKD 181
K G+M + CLL M ++V+PN T Y ++I GY +D
Sbjct: 738 YGKLGQMVKVECLLREMHSKNVHPNKIT---------------------YTVMIGGYARD 776
Query: 182 RNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMK 241
NV +A L EM +GI PDS Y +I G K G VLEA K
Sbjct: 777 GNVTEASRLLNEMREKGI-----------------VPDSITYKEFIYGYLKQGGVLEAFK 819
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
A+ VF + N + TCN L+ L + + + F ++ + G++PDV + I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAI 280
Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
+ FCK G+ ++A L MEE G+ PN
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPN 307
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +L + M PN+ + +LI G G++++ L ++++ PN IT
Sbjct: 706 ISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT 765
Query: 61 FNTL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD 105
+ + A L EM E G++ PD +T I G K G +++
Sbjct: 766 YTVMIGGYARDGNVTEASRLLNEM-REKGIV--PDSITYKEFIYGYLKQGGVLE 816
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 160/353 (45%), Gaps = 47/353 (13%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+ R +V + N+ TFN +I LC EG++ +A + VF P ++T
Sbjct: 203 LNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVT 262
Query: 61 FNTLALVALNLFEEMVNEFGVIC-------KPDVVTCTNIIDGLCKDGF-------MMDQ 106
+NTL + +L + +I +PD+ T I+ +C +G M +
Sbjct: 263 YNTL-VQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEI 321
Query: 107 GMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF--------- 157
G+ PD V+ N++ S +G +E A + M+++ + P TYNTL+ G
Sbjct: 322 GLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAA 381
Query: 158 -----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMA 212
KG D +YNILINGYC+ + + A +L EM+++GI+
Sbjct: 382 EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQ------------ 429
Query: 213 INNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLK 272
P YT+ I L + EA ++F + + N L+DG C IG +
Sbjct: 430 -----PTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMD 484
Query: 273 IAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
A+ + M + PD VTYN ++ G C EG+ ++A L+ +M+ G++P+
Sbjct: 485 RAFSLLKE-MDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 50/285 (17%)
Query: 85 PDVVTCTNIIDGLCK------------DGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEAN 132
P TC +I+ L + D + M+ ++ +V T N+M + L K+GK+++A
Sbjct: 188 PKTETCNHILTLLSRLNRIENAWVFYADMYRME--IKSNVYTFNIMINVLCKEGKLKKAK 245
Query: 133 CLLEVMIQRDVNPNTCTYNTLMDGFAWW--------------SKGCRHDVYSYNILINGY 178
L +M + P TYNTL+ GF+ SKG + D+ +YN +++
Sbjct: 246 GFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWM 305
Query: 179 CKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN------------------VPPDS 220
C N A + REM G+ D+ +YN L +N + P
Sbjct: 306 C---NEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTF 362
Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
+ Y T I GL+ + A + I VL T N LI+G C+ G K A+ + H
Sbjct: 363 YTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFAL-HD 421
Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
M G+ P TY +I+ C++ + ++A+ L + G++P+
Sbjct: 422 EMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPD 466
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 36/241 (14%)
Query: 9 VLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALV- 67
+L+ I + VT+N LI G C G +A L ++ P T+ +L V
Sbjct: 383 ILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL 442
Query: 68 --------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFM---------MDQ-GMR 109
A LFE++V G KPD+V ++DG C G M MD +
Sbjct: 443 CRKNKTREADELFEKVV---GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSIN 499
Query: 110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA----------- 158
PD VT N + L +GK EEA L+ M +R + P+ +YNTL+ G++
Sbjct: 500 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMV 559
Query: 159 ---WWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINN 215
S G + +YN L+ G K++ E A L REM SEGI + +++ ++ A++N
Sbjct: 560 RDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSN 619
Query: 216 V 216
+
Sbjct: 620 L 620
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 36/242 (14%)
Query: 7 GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTL-- 64
F ++ P T+N+LI GL E +I A L +++ + +T+N L
Sbjct: 346 AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILIN 405
Query: 65 -------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMD----------QG 107
A A L +EM+ + G+ +P T T++I LC+ + +G
Sbjct: 406 GYCQHGDAKKAFALHDEMMTD-GI--QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKG 462
Query: 108 MRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGF---------- 157
M+PD+V +N + D G M+ A LL+ M +NP+ TYN LM G
Sbjct: 463 MKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEAR 522
Query: 158 ----AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAI 213
+G + D SYN LI+GY K + + A + EMLS G TYN L +
Sbjct: 523 ELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGL 582
Query: 214 NN 215
+
Sbjct: 583 SK 584
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVIT 60
+G F LL + M P+ VT+N L++GLC EG+ EA L ++ P+ I+
Sbjct: 480 IGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHIS 539
Query: 61 FNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTD 120
+NTL G K D + D M+ G P ++T N +
Sbjct: 540 YNTLI-------------SGYSKKGDTKHAFMVRDE------MLSLGFNPTLLTYNALLK 580
Query: 121 NLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFA 158
LSK+ + E A LL M + PN ++ ++++ +
Sbjct: 581 GLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,562,449
Number of Sequences: 539616
Number of extensions: 4820954
Number of successful extensions: 23467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 12795
Number of HSP's gapped (non-prelim): 3008
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)